Genbank ID Gene Organism Gene_category Subcategory1 Subcategory2 Lineage WN1_1 WN1_2 WN1_3 WN2_1 WN2_2 WN2_3 W1 W2 W3 N1_1 N1_2 N1_3 N2_1 N2_2 N2_3 CK1 CK2 CK3 238756331 hyaluronidase Yersinia ruckeri ATCC 29473 Carbon Cycling Carbon degradation hyaluronic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia ruckeri; 1.011370403 0.974430093 0.922005916 0.947238511 0.911462617 0.959667845 0.935280397 0.913941613 1.002071495 0.928004285 0.952389797 0.948565918 0.923580618 0.929868559 0.920156313 0.934608504 0.999200182 0.977244615 358753816 ara Granulicella mallensis MP5ACTX8 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Granulicella;species:Granulicella mallensis; 0.792151534 0.808304301 0.817399601 0.840803951 0.805183358 0.818546302 0.872282538 0.823559694 0.814553524 0.805036368 365911653 ccmL Klebsiella oxytoca KCTC 1686 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella oxytoca; 1.007433149 1.03110792 0.998499112 1.038524782 1.001993705 1.037326622 1.001308205 0.95128068 0.968236836 1.010931813 1.011316046 1.013674204 1.009481753 1.014383503 0.978161216 0.992513883 1.021136954 1.009650101 116074691 Sir Synechococcus sp. RS9916 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 0.957834975 0.959832307 0.93299205 0.995894557 0.921888459 0.885916002 0.957929258 0.966999503 0.969883677 0.941832297 0.962858423 0.967989747 0.91291295 0.925063458 0.929016244 0.933377433 0.935409019 0.914007642 259454984 phospholipase_C_fungi Aspergillus fumigatus Carbon Cycling Carbon degradation Phospholipids superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya; 0.912657866 0.823487318 0.765918543 0.839583232 0.869470405 0.81139265 0.831817882 0.848596161 0.836300488 0.830607662 299067540 cysI Ralstonia solanacearum CMR15 Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 0.892657828 0.910259429 0.928358587 0.940218316 0.910383335 0.92697407 0.942769231 0.917375145 0.875540154 0.915417848 0.920915835 0.897505358 0.811225297 0.859855708 0.859060886 0.82057709 0.895787461 0.939846415 5453455 mnp Ceriporiopsis subvermispora Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Meruliaceae;genus:Ceriporiopsis; 1.109849297 1.113438089 1.020891432 1.099350925 1.061189381 1.070867414 1.0439472 1.032334312 1.075582535 1.054475704 1.050244963 1.046541941 0.977803653 1.033419201 0.983595414 1.038227952 1.090146123 1.114243693 349796086 fccab Thiorhodospira sibirica ATCC 700588 Sulfur Sulfide Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thiorhodospira;species:Thiorhodospira sibirica; 0.925456341 0.952178836 0.931296005 0.981085391 1.011818964 0.993529496 0.969351976 0.888922806 0.958913671 0.898471912 0.862112624 0.975020854 0.937382744 0.887404523 0.959005084 0.955059007 0.9837537 0.983662781 170720068 alginase Pseudomonas putida W619 Carbon Cycling Carbon degradation Alginate superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 1.00232588 0.973399043 0.977437544 1.000404221 0.987426875 0.992478805 0.9642505 0.990570827 0.965424739 0.971785905 0.951627417 0.95996747 0.962960709 0.896460047 0.904606895 0.935038167 1.001073584 0.990883513 331694506 mmox Pseudonocardia dioxanivorans CB1190 Carbon Cycling Methane Methane oxidation superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Pseudonocardia;species:Pseudonocardia dioxanivorans; 0.788689507 0.81165629 0.83251996 0.812816441 0.816972226 0.837261129 225682022 endochitinase Paracoccidioides brasiliensis Pb03 Carbon Cycling Carbon degradation Chitin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;genus:Paracoccidioides;species:Paracoccidioides brasiliensis; 0.840811536 0.802840458 0.83483234 0.821429921 0.806425137 0.8447437 0.8359348 269791353 acetylglucosaminidase Thermobaculum terrenum ATCC BAA-798 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;genus:Thermobaculum;species:Thermobaculum terrenum; 1.070110704 1.067719139 1.056250953 1.056745277 1.044557482 1.085089504 1.02616169 1.049326174 1.067896838 1.062196337 1.039624433 1.045092346 1.022775355 1.031031756 1.010202644 1.008561417 1.0446007 1.042088569 413931729 one_ring_23diox Burkholderia sp. SJ98 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 0.835095493 0.884224648 0.838186291 0.85996855 0.832664529 0.785593423 0.842052177 0.872149829 157085507 cysJ Citrobacter koseri ATCC BAA-895 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter koseri; 1.097765109 1.150085555 1.078781916 1.062864044 1.071007906 1.103183311 1.091819892 1.033441311 1.04781314 1.09913203 1.058115624 1.063365519 1.086882417 1.105111858 1.069467739 1.091346182 1.057278909 1.068994963 197730187 poba Streptomyces clavuligerus ATCC 27064 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces clavuligerus; 1.078687132 1.095794194 1.069135275 1.094561416 1.061931586 1.077734261 1.058443617 1.079463642 1.072857194 1.068338667 1.063420912 1.092960612 1.054523845 1.052637311 1.059121892 1.059425384 1.115486764 1.066238206 78102047 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.978748169 0.974989134 1.001535588 0.994054964 1.042366639 1.013966218 1.013481044 1.052381147 1.022174106 0.99003618 0.987083193 1.063966314 1.019454448 1.007111618 1.070252678 1.066180979 1.044931075 1.03924327 403205243 tfda Gordonia rhizosphera NBRC 16068 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia rhizosphera; 0.906662908 0.923621928 0.831431521 0.902679574 0.835423436 0.894132716 0.830908638 0.837880904 0.852405223 0.917997917 0.839875785 0.866170756 0.82130427 0.858001759 0.823039727 0.919323338 0.932431172 154156163 mult_ring_12DiOx Parvibaculum lavamentivorans DS-1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Parvibaculum;species:Parvibaculum lavamentivorans; 1.025525037 0.993313456 0.999925836 1.055061234 0.988920921 1.03320376 1.024554132 1.054500254 1.001985547 1.001107814 0.947923344 1.032789349 0.940000755 0.959334702 0.929168699 0.934011746 0.992855521 1.021276184 396928387 one_ring_23diox Rhodococcus sp. JVH1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 0.837043903 0.828779864 0.847545219 0.801899062 0.828201165 0.815548582 0.803956452 0.835774419 0.855156355 0.826280919 88703413 mer gamma proteobacterium KT 71 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Congregibacter;species:Congregibacter litoralis; 0.790981341 0.794914593 0.786816655 0.810562974 218291273 arsc Alicyclobacillus acidocaldarius LAA1 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Alicyclobacillus;species:Alicyclobacillus acidocaldarius; 1.192754258 1.210423954 1.18850106 1.151093596 1.148360914 1.177472131 1.133476552 1.149686863 1.149486684 1.172241653 1.181974557 1.156968953 1.122546648 1.151836195 1.127305315 1.218332269 1.167451618 1.192092119 179347374 chnb Methylobacterium populi BJ001 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium populi; 1.396130362 1.370318816 1.342887436 1.361365069 1.379013876 1.411297591 1.34956443 1.348130554 1.341910105 1.353948077 1.366980135 1.365036164 1.359250173 1.335767912 1.331685766 1.363862311 1.382116575 1.348082003 382946942 merb Mycobacterium abscessus M94 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium abscessus; 0.971183466 0.958892606 0.920922178 0.943301315 0.910703543 0.959840648 0.921974492 0.944768413 0.935879331 0.976399054 0.850084365 0.94349166 0.824511327 0.900299369 0.791274728 0.869474366 0.924916207 0.939250992 84381355 alkb Janibacter sp. HTCC2649 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Janibacter; 0.809898722 0.791178813 0.828680934 0.826339114 0.879957323 0.8608757 0.83586297 227497029 ppk Actinomyces urogenitalis DSM 15434 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces urogenitalis; 1.070172002 1.091582285 1.047189056 1.051395252 1.065666666 1.079656928 1.011837226 1.025542585 0.999353903 1.050313639 1.10429875 1.020344375 1.069494936 1.030156335 0.997158476 1.041040071 1.069005107 1.0567284 359295624 B_lactamase_A Halomonas sp. GFAJ-1 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas; 0.954172441 0.931916971 0.955288644 0.954624302 0.927810972 0.964384841 0.934895214 0.904216643 0.960139397 0.944100534 0.94315173 0.979915495 0.939786151 0.941390929 0.926469659 0.931450535 0.954772663 0.960189547 169616370 glucoamylase Phaeosphaeria nodorum SN15 Carbon Cycling Carbon degradation Starch superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Phaeosphaeriaceae;genus:Phaeosphaeria;species:Phaeosphaeria nodorum; 0.907786432 0.875834195 0.81926865 0.817937389 0.830020725 0.792100569 0.793711284 0.869978613 0.92109369 0.879326657 154334612 gdh Leishmania braziliensis MHOM/BR/75/M2904 Nitrogen Ammonification NA superkingdom:Eukaryota;order:Kinetoplastida;family:Trypanosomatidae;genus:Leishmania;species:Leishmania braziliensis; 0.794469035 0.85155163 0.846404981 0.876991436 0.826254325 0.803836221 0.800588882 0.866799399 0.827550831 0.806812623 0.862910272 0.834281501 291486519 RgaE Bacillus subtilis subsp. natto BEST195 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus subtilis; 1.007298526 0.9694194 0.9729208 1.017740961 1.008901556 0.978768711 0.971992586 0.984429596 0.978692934 0.981573444 1.013941638 1.015644119 0.963689305 0.957431861 0.982983934 0.974627301 0.991722184 1.006346465 345015320 acetylglucosaminidase Streptomyces violaceusniger Tu 4113 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces violaceusniger; 1.303765637 1.274747136 1.255299411 1.278917204 1.233443358 1.268655884 1.239338044 1.242450569 1.249550431 1.235162958 1.228670888 1.26149483 1.23434948 1.208078174 1.193048713 1.251757997 1.278111335 1.24743433 325674082 ppx Rhodococcus equi ATCC 33707 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus equi; 0.955888302 0.975302986 0.938560844 0.959245593 0.930690329 1.022268828 0.929272494 0.925188306 0.940728472 0.996898766 0.964151414 0.931760486 0.908807638 0.932728667 0.884117839 0.901259236 0.968208411 1.000887799 115364871 chitinase Stigmatella aurantiaca DW4/3-1 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 0.919459938 0.927939655 0.893598281 0.931557115 0.890756643 0.891635826 0.86877038 0.872849786 0.91898766 0.930546091 0.893378818 0.950268582 0.883093329 0.904635529 0.926202804 0.882990183 0.921583592 353192324 cutinase Mycobacterium rhodesiae JS60 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 0.824290378 0.827443186 0.842948128 0.818382232 0.863537629 0.863070715 0.830580733 0.789747704 0.862369383 0.782238038 0.874495066 0.81203819 297585533 amyA Bacillus selenitireducens MLS10 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus selenitireducens; 0.836704474 0.82248657 0.819210871 0.838179345 0.829647827 307583834 dehh109 Burkholderia sp. CCGE1003 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 0.829031773 0.807243807 0.83183302 148954201 cutinase Fusarium oxysporum Carbon Cycling Carbon degradation Cutin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;genus:Fusarium; 0.967969307 0.99020669 1.012247652 1.044689103 1.015386023 0.981088149 1.026164177 1.021746394 0.998456775 0.954048661 0.977418608 1.000318634 0.881965911 0.910449549 0.931185083 0.915141049 1.046307011 1.03074588 358752898 chitinase Granulicella mallensis MP5ACTX8 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Granulicella;species:Granulicella mallensis; 0.853672313 0.907472078 0.900801895 0.851719157 0.851291393 0.853456496 0.81544091 0.890366953 0.885689369 0.884272877 0.850857763 0.775683356 0.822113851 0.87894969 0.904063941 116192823 pec_Cdeg Chaetomium globosum CBS 148.51 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 1.144243212 1.122272997 1.041068598 1.094845472 1.040604139 1.092393874 1.078287898 1.063899771 1.064199514 1.070181725 1.047327962 1.060319333 1.040493843 1.060973727 1.05272854 1.07138216 1.103658704 1.084940351 383933729 FBPase Rheinheimera nanhaiensis E407-8 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Rheinheimera;species:Rheinheimera nanhaiensis; 0.795332704 0.791884983 0.802451337 0.783060869 0.781188763 383083208 amyA Leptospirillum ferrooxidans C2-3 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Nitrospirae;class:Nitrospira;order:Nitrospirales;family:Nitrospiraceae;genus:Leptospirillum;species:Leptospirillum ferrooxidans; 1.086677544 1.076221479 1.059826717 1.141789539 1.109530931 1.092370688 1.114116759 1.135013145 1.12460436 1.064504957 1.083383917 1.116890135 1.037215855 1.033224907 1.010212857 1.050661235 1.120894284 1.110884902 189196512 glx Pyrenophora tritici-repentis Pt-1C-BFP Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 1.313628355 1.29547715 1.290317612 1.2873299 1.248428663 1.288808646 1.215608478 1.280079851 1.256829513 1.30044481 1.276151909 1.294990078 1.264556644 1.219834057 1.235154619 1.2275481 1.318360128 1.292997519 171680536 tannase_Cdeg Podospora anserina Carbon Cycling Carbon degradation Tannins superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Lasiosphaeriaceae;genus:Podospora;species:Podospora anserina; 0.86677492 0.899653944 0.821008951 0.871665633 0.821412172 0.846509214 0.819072382 0.861233123 0.850198688 0.818157176 0.821430094 0.85660413 0.817382545 0.94517411 121495610 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.893452587 0.811148406 0.767506836 0.815787767 0.83419958 0.804404743 0.821390264 0.80194034 0.83272038 0.799314566 320332969 mannanase Deinococcus maricopensis DSM 21211 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus maricopensis; 1.387377009 1.341262217 1.340308623 1.357472705 1.332412469 1.346378079 1.311926214 1.337771326 1.342755954 1.323270834 1.32414605 1.341696043 1.313101745 1.290427381 1.22872129 1.299007569 1.364223112 1.31398743 114330729 amyA Nitrosomonas eutropha C91 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas;species:Nitrosomonas eutropha; 0.86403627 0.79300187 0.829963893 0.857086204 0.83504005 0.785943184 0.800953414 0.798166973 0.8031548 0.85321518 0.795988367 0.812758978 0.843900865 0.849254366 229611240 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.959013401 0.87888855 0.95930554 1.010318109 0.942327274 0.935888803 0.967388656 1.028638677 0.95035598 0.924894336 0.914803872 0.957287578 0.901082065 0.864896479 0.888777176 0.914696134 1.003384948 0.912235885 296846742 amyA Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Nocardiopsis;species:Nocardiopsis dassonvillei; 0.846409966 0.838104855 0.851156423 0.860359711 0.879722223 0.859868243 0.852157818 0.904620796 0.799437706 0.773348663 0.894597142 145576103 phn Pseudomonas mendocina ymp Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas mendocina; 0.906985432 0.853740276 0.915159468 0.880662427 0.891894999 0.895875945 0.931348996 0.917475357 0.861428206 0.904438724 0.903539606 0.903841407 0.835462718 0.827802488 0.821052621 0.845110494 0.925242135 0.951823808 357406770 exaa(moxf) Methylomicrobium alcaliphilum 20Z Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylomicrobium;species:Methylomicrobium alcaliphilum; 0.971032639 0.948056986 0.913526514 0.925245786 0.894708129 0.914131835 0.896508028 0.896346386 0.930981499 0.944753221 0.926043372 0.931940292 0.896921922 0.937919467 0.838278069 0.875708097 0.924235633 0.946441625 407787065 nosz Celeribacter baekdonensis B30 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Celeribacter;species:Celeribacter baekdonensis; 1.158865511 1.157606289 1.19376405 1.19515024 1.167510233 1.171925556 1.189424275 1.216248326 1.187278915 1.172567869 1.146101885 1.190586008 1.132373174 1.123519927 1.124768193 1.157317896 1.177787667 1.144057997 254510744 arsm Rhodobacteraceae bacterium KLH11 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 0.899142612 0.843489914 0.849199526 0.882598844 0.827163919 0.820927986 0.848075603 0.851585178 0.856876173 0.79653606 0.818542086 0.773774725 0.801519399 0.812880294 0.85552656 0.915632287 17385460 narg Pseudomonas sp. Lgg10.5 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.876114431 0.864367266 0.884882503 0.907429173 0.912901937 0.89092891 0.891780044 0.866977825 0.863448694 0.873583675 0.876773548 0.897709897 0.843095171 0.892512871 0.920353457 424046193 nfsb_2 Vibrio cholerae HENC-03 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 1.013237547 1.053306894 1.020395023 1.068942394 1.074490188 1.05522768 1.0209407 1.011424741 1.022079802 1.071699156 1.031331658 1.065622903 1.052643383 1.001158511 1.009114932 1.049901094 1.026891662 1.034631782 192764476 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.104453515 1.084736474 1.035243308 1.101917413 1.044398976 1.081387047 1.031229203 1.073725423 1.057316246 1.063597092 1.036088593 1.048409538 1.047475281 1.0667556 1.008069152 1.055142252 1.08952817 1.078411999 345881645 acetylglucosaminidase Prevotella oulorum F0390 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella oulorum; 0.804214795 0.811595588 0.787696321 0.815871691 319652870 CsoS1_CcmK Bacillus sp. 2_A_57_CT2 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 0.82038273 0.790736201 0.838675105 0.80735525 0.784436479 0.806752702 0.790566104 0.847626098 0.846585819 0.830395421 0.798271575 0.843233094 357006282 ccmL Paenibacillus larvae subsp. larvae B-3650 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus larvae; 0.903225331 0.918759379 0.927727652 0.898917914 0.880652166 0.923251572 0.893019435 0.918871539 0.965146708 0.943592979 0.833797155 0.915607519 0.800416105 0.902208567 0.828858012 0.859809235 0.904936074 0.909563649 239820777 pcpe Variovorax paradoxus S110 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 1.225519187 1.173379604 1.19742035 1.201225597 1.176483266 1.201856367 1.201618883 1.194259575 1.187032155 1.169472034 1.181821716 1.195551813 1.179619592 1.158779374 1.182079141 1.21349982 1.202216804 1.160636243 229473031 dsrB uncultured bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.784714945 0.805297118 0.832923784 0.830281937 0.820495787 0.765912832 260839753 FBPase Vibrio sp. RC341 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 0.863285537 0.819942552 0.805795604 0.869917891 0.835632236 0.909993853 0.858550481 0.796397686 0.830774098 0.80095651 0.838805679 312195127 xylg Frankia sp. EuI1c Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 0.937228749 0.991563673 0.94158029 0.974687921 1.001650885 0.982036075 0.951103267 0.940894514 0.950169392 0.979417014 0.979602479 1.00600431 0.992036599 0.969038153 0.95681796 0.97182276 0.984329831 0.976806601 110825410 cdh Rhodococcus sp. RHA1 Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 1.561140082 1.526557708 1.534366014 1.548922609 1.519863996 1.552258067 1.511019532 1.560968688 1.543105721 1.503146353 1.513434347 1.542092193 1.508742308 1.490228381 1.519252952 1.525960024 1.517369101 1.481899059 260651759 ara Streptomyces scabiei 87.22 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces scabiei; 1.152215233 1.084637414 1.110638502 1.098620409 1.150710219 1.176664735 1.135138535 1.158673053 1.12001643 1.147190382 1.117184415 1.113744589 1.119372608 1.089595259 1.101443484 1.085565581 1.147620567 1.111769476 325965169 RgaE Arthrobacter phenanthrenivorans Sphe3 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter phenanthrenivorans; 0.850615733 0.874988716 0.837768952 0.878318093 0.844120959 0.869104783 0.824842259 0.852497631 0.861180124 0.846393794 0.814693714 0.833205478 0.851086562 0.905970143 0.808138428 0.805441762 0.89059439 0.868320528 220904627 CsoS1_CcmK Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio desulfuricans; 1.049331525 1.010776267 0.998436904 1.027322256 1.018504704 0.991122964 1.007949378 1.027614615 1.012965516 0.959969022 0.966767546 0.990008824 0.995332613 0.929661999 0.947137076 0.972658718 1.00723571 0.977471243 194310701 dsra Prosthecochloris aestuarii DSM 271 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Prosthecochloris;species:Prosthecochloris aestuarii; 1.113442188 1.03088601 1.073699833 1.153725829 1.067293694 1.070139856 1.093975012 1.095425436 1.096063755 1.067602517 1.090079923 1.099096046 1.03674145 0.990174887 1.012265048 1.035854324 1.136049156 1.067396791 39649069 tfth Rhodopseudomonas palustris CGA009 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 1.215055821 1.167026645 1.147549047 1.208210788 1.126978813 1.209751882 1.152524942 1.18397159 1.169965619 1.169664378 1.123822363 1.160093751 1.099651131 1.124987878 1.084016607 1.127384135 1.198100941 1.178669199 297155974 chitinase Streptomyces bingchenggensis BCW-1 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces bingchenggensis; 0.941593708 0.915345907 0.896057129 0.944091224 0.915497853 0.951581467 0.994332799 0.914566708 0.931936887 0.873218598 0.928448149 0.937095354 0.908083106 0.923454376 0.908195324 0.88216733 0.925074507 0.923293945 321165281 cellobiase Granulicella tundricola MP5ACTX9 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Granulicella;species:Granulicella tundricola; 1.350289333 1.317579256 1.261086848 1.236890188 1.26430991 1.251934116 1.169316214 1.228749452 1.247171582 1.180375544 1.187892414 1.254032511 1.262011001 1.177709584 1.165272532 1.228405778 1.275916118 1.270990838 116067966 PRK Synechococcus sp. RS9916 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 0.967333283 0.989926882 0.971853363 0.947982339 0.951575881 0.989485782 0.930732852 0.99767767 0.968570235 0.986930926 0.937591662 0.950963163 0.927947912 0.984249104 0.903849219 0.943297163 0.941868882 0.949486263 50982466 pmoa uncultured bacterium Carbon Cycling Methane Methane oxidation superkingdom:Bacteria; 0.9395131 0.8864727 0.88186728 0.910419267 0.88558101 0.916419028 0.853759417 0.85725303 0.898923079 0.865302684 0.888944948 0.856270427 0.88248587 0.833637854 0.844912027 0.840560979 0.943605894 0.914139219 148628249 one_ring_23diox uncultured bacterium Organic Remediation Aromatics Other aromatics superkingdom:Bacteria; 0.915022883 0.865062983 0.888435681 0.931526607 0.892958516 0.917085168 0.879611388 0.891013932 0.872962093 0.886524029 0.793259231 0.83693967 0.804436539 0.882162899 0.910116435 15825442 chrr Bacillus subtilis Metal Homeostasis Chromium Detoxification superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 0.899619231 0.831261796 0.798310333 0.821777993 0.922371649 0.917143831 0.916586103 0.850242141 0.853915847 0.802252784 0.893795336 0.874910462 0.909503832 0.83879097 0.92577484 209401742 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.32119272 1.294215423 1.270868614 1.278211033 1.255737727 1.313218543 1.261786928 1.289618621 1.260505343 1.246774765 1.27014476 1.276393452 1.252778528 1.258267419 1.246058949 1.276392925 1.285872078 1.264642671 357402281 amyA Streptomyces cattleya NRRL 8057 = DSM 46488 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces cattleya; 1.55765466 1.494943252 1.489571949 1.487670106 1.478221463 1.551044558 1.489139105 1.49312664 1.496324279 1.472242799 1.499891977 1.482152926 1.494835918 1.453931828 1.47896203 1.473963214 1.539753867 1.470328721 5441780 cumc Streptomyces coelicolor A3(2) Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 1.147299645 1.199503203 1.119462078 1.115312286 1.121164714 1.148779459 1.090406986 1.121450419 1.141911524 1.116596206 1.115841826 1.117234022 1.101509049 1.088428224 1.05272816 1.108763629 1.127568437 1.162225553 26278878 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.213615881 1.215231462 1.214885491 1.217074746 1.219726708 1.22935833 1.183531334 1.20642932 1.210382819 1.20545443 1.192768104 1.198518564 1.197061426 1.171658966 1.166828305 1.220164321 1.222952084 1.206929588 113730621 poba Caulobacter sp. K31 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 0.988196479 1.028735652 1.016060469 1.014605879 1.00825132 1.040451037 0.938150445 0.946195079 0.975895991 1.006444941 0.999914362 0.9705715 0.997965835 0.994209154 0.98456084 0.97662959 1.036345795 1.057513121 375141914 amyA Mycobacterium rhodesiae NBB3 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 0.967195699 0.909119419 0.941454063 0.90314046 0.951653316 0.923039184 0.923248891 0.906169221 0.927577008 0.959051645 0.905827568 0.915729978 0.881610849 0.843521872 0.921439978 0.897629063 0.926413309 0.922277926 9716120 urec Streptomyces coelicolor A3(2) Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 1.184968773 1.128665698 1.13833763 1.157785459 1.131697532 1.164329559 1.10934692 1.149493045 1.154720516 1.119369824 1.124804594 1.127707472 1.101429739 1.108438854 1.065012677 1.095828409 1.186141198 1.156762555 70930914 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.125860026 1.090624554 1.102960708 1.108810182 1.050877914 1.064605747 1.07242995 1.089620675 1.099519742 1.100412965 1.076408515 1.112398895 1.062931658 1.049167873 1.042822849 1.0586406 1.125704776 1.091851395 56709218 dehh109 Silicibacter pomeroyi DSS-3 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 0.900281 0.897778085 0.899735347 0.936298845 0.896707523 0.915317197 0.906846737 0.878375572 0.842473303 0.889185607 0.879532991 0.865271404 0.825472573 0.849333003 0.881826786 0.984112715 27351775 soxY Bradyrhizobium japonicum USDA 110 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 0.911478497 0.805715697 0.802969974 0.808366258 0.859340216 0.832489673 0.865169586 0.86066513 0.822116627 0.80494598 0.846690276 0.831420164 1255504 nifh unidentified bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 1.287598605 1.265005473 1.248518992 1.284423544 1.265138737 1.240253787 1.230533665 1.240109534 1.247178272 1.26149913 1.247226745 1.286594768 1.241472145 1.225167002 1.207940046 1.188089126 1.258426383 1.20238717 357022852 alkb Mycobacterium thermoresistibile ATCC 19527 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium thermoresistibile; 1.073673915 1.078493324 1.024071774 1.073241382 1.003066579 1.055555847 1.027583663 1.050244356 1.118233281 1.041936994 0.998677006 1.052511474 0.985960883 1.017565185 1.00120047 1.006162931 1.074289161 1.059037794 84383810 amyA Janibacter sp. HTCC2649 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Janibacter; 1.180032901 1.144751516 1.107333798 1.137767217 1.131746239 1.180634503 1.097744968 1.139509828 1.08201594 1.128493194 1.064542269 1.077579136 1.103326524 1.147319809 1.102796419 1.127313543 1.219884481 1.176756946 115401686 cutinase Aspergillus terreus NIH2624 Carbon Cycling Carbon degradation Cutin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 1.025254002 0.963166319 1.022530392 1.025162219 0.995982219 1.01520857 1.041022932 1.04041626 1.030822256 1.006933666 0.956872988 0.98484012 0.980385093 0.967785756 0.940932799 0.922344436 1.000550251 1.028101221 177840389 RgaE Opitutus terrae PB90-1 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 1.052472035 1.067402112 1.043578787 1.009131396 0.97279624 0.977732209 0.961910682 0.979305283 0.984534197 1.014146817 1.021008049 1.033326447 0.969107382 0.922650534 0.928583039 0.976128473 0.990891306 0.9845184 77465140 arsc Rhodobacter sphaeroides 2.4.1 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 1.105044127 1.209716083 1.08925409 1.061762577 1.048367363 1.120938666 1.039311438 1.028005694 1.050195082 1.043156034 1.029939495 1.029625433 1.044039899 1.053788023 1.014867515 1.020331296 1.049399732 1.077660199 284042004 linb Conexibacter woesei DSM 14684 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Solirubrobacterales;family:Conexibacteraceae;genus:Conexibacter;species:Conexibacter woesei; 1.145201621 1.116297023 1.050648806 1.116719717 1.070210806 1.11095078 1.036091177 1.070433469 1.090848894 1.058848492 1.064319414 1.075596006 1.047161569 1.045025805 1.016332705 1.065122286 1.128794361 1.098229294 323454151 terc Aureococcus anophagefferens Metal Homeostasis Tellurium Detoxification superkingdom:Eukaryota;class:Pelagophyceae;genus:Aureococcus; 0.812194914 0.859409155 0.867350147 0.877144772 0.857924701 0.892539058 0.874162938 0.795566391 0.879244987 0.82517597 0.846292132 0.844612967 0.825668916 0.843703808 0.833307065 0.860963355 0.871762468 296028071 arsc Tsukamurella paurometabola DSM 20162 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Tsukamurellaceae;genus:Tsukamurella;species:Tsukamurella paurometabola; 1.194913368 1.207864766 1.072741559 1.163810049 1.185641904 1.162093093 1.166914834 1.228388424 1.19229199 1.094075672 1.076292124 1.101971628 1.167653387 1.233604362 1.040669164 1.032316989 1.206427178 1.254437536 325128259 cysI Neisseria meningitidis N1568 Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria meningitidis; 0.774240411 0.790210406 0.85442342 259023519 alkb Rhodobacter sp. SW2 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter; 1.012340213 0.941362841 0.989470623 1.018715677 0.999464901 0.965155019 0.982609324 1.005291669 0.993293458 0.95730522 1.001717398 1.008987672 0.925260335 0.905032903 0.936309229 0.927919375 0.976093746 0.952883443 226366506 mhpa Rhodococcus opacus B4 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus opacus; 0.855333191 0.848603639 0.886426942 0.862640833 0.868754279 0.837345697 0.844693131 0.892933135 0.896473781 0.888367953 0.861366069 0.891833391 0.842791199 0.848653689 0.834067703 0.851475319 0.861729567 198260950 ara Verrucomicrobiae bacterium DG1235 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales; 0.809681215 0.847115183 0.837745262 0.827960989 0.904541134 0.84288291 0.876162869 0.821802302 0.845760271 0.853578804 0.803570051 0.81122643 0.802638127 0.85112093 0.836105089 156062912 lactase_fungi Sclerotinia sclerotiorum 1980 Carbon Cycling Carbon degradation Lactose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Sclerotinia;species:Sclerotinia sclerotiorum; 0.907351726 0.812804403 0.861713291 0.856338791 0.812187239 0.838068185 0.860664622 0.820292948 0.859674514 0.925624412 0.913939579 0.848928691 0.821753177 0.856740115 0.795499168 0.875756634 0.842594797 0.88552099 113724267 nhh Sinorhizobium medicae WSM419 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 0.886220446 0.858342168 0.880788781 0.858311754 0.858851707 0.892443622 0.893259502 0.873346459 0.863118795 0.86675406 0.844009191 0.866965274 0.839789219 0.855190602 0.942397997 0.887248448 190574362 arsc Stenotrophomonas maltophilia K279a Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 1.449196443 1.423174149 1.342440159 1.429172394 1.303956036 1.483662562 1.328452315 1.344114488 1.35742176 1.415720552 1.364053294 1.414188951 1.334952582 1.374269071 1.317555673 1.390264043 1.450545363 1.407806801 154704313 protease_serine_fungi Sclerotinia sclerotiorum 1980 Carbon Cycling Carbon degradation protein superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Sclerotinia;species:Sclerotinia sclerotiorum; 0.998043575 0.955252096 1.00431546 1.012723582 1.0260436 1.004027238 1.030042554 1.021619394 0.982781134 1.011615136 1.02852679 0.989998684 0.99246098 0.951623219 0.890800581 0.937166767 1.025258308 0.990732812 398027245 trze Novosphingobium sp. AP12 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 0.903826116 0.863469032 0.875412747 0.875005154 0.847894855 0.878371303 0.836550318 0.838905024 0.845610132 0.817889691 0.835836102 0.927042887 0.862079971 344039093 catechol_b Streptomyces violaceusniger Tu 4113 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces violaceusniger; 0.835511099 0.829634503 0.886606963 0.829464924 0.808782481 0.81072634 0.83783573 0.828745192 33320448 dsrB Desulfacinum infernum Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophobacteraceae;genus:Desulfacinum; 0.914303231 0.873031179 0.835108152 0.944609589 0.876830747 0.92424268 0.860026652 0.832324652 0.860124984 0.88579911 0.855775735 0.859444431 0.812849832 0.913040999 0.838068286 0.841547478 0.910419574 0.86067845 33386644 glx Ustilago maydis Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Ustilaginomycetes;order:Ustilaginales;family:Ustilaginaceae;genus:Ustilago; 1.040508107 0.817679953 0.945861334 0.813491301 0.856993425 0.790479249 0.848189134 0.822447096 0.823196575 0.880098942 0.990090797 0.779159383 94966431 amyA Brachybacterium sp. LB25 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dermabacteraceae;genus:Brachybacterium; 1.243551633 1.211674763 1.218505345 1.223592651 1.171418115 1.206383828 1.21078339 1.22105554 1.214714755 1.227808004 1.202760719 1.222450484 1.175844918 1.204531776 1.179005785 1.210209062 1.240396761 1.222376987 330971429 nhh Pseudomonas syringae pv. aceris str. M302273 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae; 0.871754015 0.834333296 0.840321756 0.842634486 0.850537017 0.807077881 1.029589782 0.869067446 0.842550784 0.819524005 0.85438587 0.831056957 0.863914063 356881553 chitinase Azospirillum brasilense Sp245 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum brasilense; 1.146829988 1.125494713 1.08270973 1.110930217 1.093567026 1.101928732 1.077053332 1.083844183 1.112887866 1.099424898 1.107991871 1.111552385 1.090742073 1.042156828 1.057483503 1.048665676 1.132781953 1.095720823 194343579 cellobiase Streptomyces sp. Mg1 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 1.123477684 1.158429118 1.125758285 1.095126984 1.045462818 1.138441671 1.037013284 1.095650352 1.087095679 1.098256686 1.0925768 1.085632053 1.033150507 1.085267665 1.015363327 1.071189988 1.110811182 1.108355995 72161237 amyA Thermobifida fusca YX Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Thermobifida;species:Thermobifida fusca; 1.322135442 1.327224194 1.295924511 1.30140605 1.285878486 1.339940162 1.302869165 1.311185776 1.276291404 1.313887839 1.30490072 1.293994152 1.237247863 1.266005892 1.234468426 1.292123038 1.277596652 1.289631556 165880013 exoglucanase uncultured fungus Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi; 0.910594096 1.069574332 0.95247982 0.981361685 0.929649709 0.982064906 0.920149241 0.950822406 0.899293276 0.995268305 0.940939418 0.937016875 0.945164576 0.933754076 0.894336295 0.943665387 0.948132346 0.974500517 259703991 FBPase Methylibium petroleiphilum PM1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 0.938449593 0.921938517 0.928690616 0.916487119 0.955089943 0.987977854 0.981032895 0.957110879 0.942498799 1.019018414 0.960938488 0.94177409 0.939785152 0.946994671 0.86367482 0.956708146 0.94060081 1.002143323 164455684 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 0.97293574 0.938023151 0.955813804 0.988887934 0.894893045 0.919167401 0.878122604 0.909318481 0.966653825 0.935072386 0.880934063 0.947478471 0.912653908 0.895845466 0.891717618 0.875478613 0.978243515 0.936001873 308919937 cysI Ralstonia sp. 5_7_47FAA Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 1.130522655 1.089054935 1.117636003 1.107087139 1.035699697 1.09136715 1.056615059 1.072190869 1.103387278 1.099148288 1.087994917 1.080063282 1.068904473 1.034747566 1.044938709 1.038392883 1.116118522 1.100066317 222543110 phytase uncultured bacterium Phosphorus Phytic acid hydrolysis NA superkingdom:Bacteria; 1.239555117 1.206916083 1.2183781 1.215354801 1.220569768 1.274610667 1.221304298 1.193946749 1.198348786 1.216854713 1.238389679 1.199603727 1.265551581 1.196686516 1.191220962 1.203538987 1.227812592 1.204330055 307742774 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.84750666 0.839824601 0.850961182 0.886435119 0.871534882 0.863007893 0.884447388 0.854674154 0.874130206 0.881623841 0.809300381 0.876334939 0.815641823 0.864542487 0.830679194 0.889870741 0.85803047 332297127 chitinase Treponema brennaborense DSM 12168 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema brennaborense; 1.116580725 1.094618102 1.132000265 1.147569687 1.110663162 1.132383313 1.127941815 1.131666737 1.139337118 1.094119718 1.105976218 1.120911853 1.093854104 1.078446699 1.089550992 1.085022672 1.119303858 1.091159633 2588986 phdk Nocardioides sp. Organic Remediation Polycyclic aromatics NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 0.767982507 0.814423113 0.818255146 0.801396706 0.785168325 261284230 ara Geobacillus sp. Y412MC10 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 0.846226911 0.792752547 0.802341774 0.821573474 126708216 GAPDH_Calvin Sagittula stellata E-37 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 1.092186668 1.102838079 1.178503202 1.112169299 1.145250145 1.063544987 1.082582757 1.017854929 1.03934514 1.180472542 1.171263014 1.149832942 1.163852404 1.100213416 1.171122899 1.141290039 1.066920626 1.090241503 120603179 aps_apra Desulfovibrio vulgaris DP4 Sulfur adenylylsulfate reductase NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio vulgaris; 0.922428434 0.844326327 0.890233924 0.946953814 0.878886981 0.884099234 0.810314339 0.871224846 0.907320007 0.885104033 0.850223092 0.88703295 0.866122033 0.873606199 0.862566178 0.854440593 0.952098263 0.872463959 315590110 amyA Intrasporangium calvum DSM 43043 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Intrasporangium;species:Intrasporangium calvum; 0.854379177 0.811856681 0.889490571 0.890958168 0.930327357 0.855531301 0.922818892 0.948102294 0.869453242 0.887544173 0.88734702 0.918720611 0.914283164 0.864438478 0.970159325 0.844581745 0.889008042 149357989 linb Marinobacter algicola DG893 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter algicola; 1.148422292 1.139370836 1.216967521 1.162308909 1.170779754 1.142915368 1.138838672 1.123929536 1.130265536 1.208223959 1.127236116 1.142831975 1.117915073 1.0739761 1.100997814 1.134720321 1.163250318 1.093911282 23429039 exoglucanase Cochliobolus heterostrophus Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Cochliobolus; 0.921824863 0.927777056 0.873109105 0.933515216 0.892491361 0.885138012 0.906079543 0.811126232 0.933041768 0.906693486 0.871337668 0.917904536 0.908325117 0.885279682 0.84772607 0.9181215 0.904913837 353210191 fccab Hyphomicrobium denitrificans 1NES1 Sulfur Sulfide Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium;species:Hyphomicrobium denitrificans; 0.936734816 0.963277278 0.99552465 0.959322856 0.988988729 0.94442287 0.916471978 0.881383524 0.920813644 0.923476056 0.914183618 0.905877861 0.916825697 0.86821058 0.982945928 0.904202329 0.936080269 0.898037675 34014589 exoglucanase Athelia rolfsii Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Atheliales;family:Atheliaceae;genus:Athelia; 0.897266579 0.834637595 0.830193901 0.892804106 0.832248203 0.833083871 0.856618409 0.843413155 0.880208535 0.822881457 0.848444565 0.81065565 0.867228434 0.904854806 351592049 pcpe Pelagibacterium halotolerans B2 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Pelagibacterium;species:Pelagibacterium halotolerans; 0.76617036 0.82543534 0.809034501 0.819751618 377559541 amyA Gordonia otitidis NBRC 100426 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia otitidis; 0.912623122 0.992903412 0.9780762 0.907633308 0.876063959 0.932867913 0.847870522 0.883912806 0.956656332 0.944155168 0.917968983 0.866300236 0.838004281 0.922023148 0.860872561 0.881794149 0.919781676 0.922702075 90420163 terc Aurantimonas sp. SI85-9A1 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Aurantimonas;species:Aurantimonas manganoxydans; 0.906567814 0.917191776 0.891920191 0.927853998 0.887631034 0.897174372 0.939703708 0.855914663 0.880883342 0.92859607 0.947399223 0.935074179 0.936650833 0.877169157 0.861790554 0.916392213 0.910875395 0.877364625 384192350 amyA Bifidobacterium animalis subsp. lactis CNCM I-2494 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium animalis; 0.861858771 0.891887306 0.849237045 0.866428429 0.837410497 0.884824848 0.824663118 0.834844855 0.825045723 0.882820883 0.923437171 295091675 ccmL Clostridium cf. saccharolyticum K10 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium saccharolyticum; 0.782647993 0.797641602 0.791928828 0.853442005 0.894820048 0.856207552 0.852990559 0.837697596 0.85613696 0.844389606 0.82026952 0.780878184 0.838987749 0.864681933 254423965 amyA Synechococcus sp. PCC 7335 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 0.855916331 0.876039906 0.85752235 0.858620681 0.882485901 0.902611709 0.827816283 0.855185215 0.895843989 0.905872627 0.845434464 0.860878136 0.87874986 0.840886031 0.862173091 0.922851843 0.911362449 386691635 terc Micromonospora lupini str. Lupac 08 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Micromonospora;species:Micromonospora lupini; 0.934623715 0.8918175 0.846171149 0.892168663 0.87614191 0.896653615 0.858017162 0.879888322 0.895220476 0.875827505 0.871272102 0.873109682 0.889629483 0.900887771 0.913457692 37522894 GAPDH_Calvin Gloeobacter violaceus PCC 7421 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Cyanobacteria;class:Gloeobacteria;order:Gloeobacterales;genus:Gloeobacter;species:Gloeobacter violaceus; 1.184675232 1.1827686 1.126439873 1.178808614 1.156951496 1.167369662 1.133466541 1.159309535 1.17879265 1.139268048 1.16552869 1.180741426 1.133521809 1.135557882 1.103668547 1.096910099 1.139059225 1.143830889 256360247 ara Catenulispora acidiphila DSM 44928 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 1.112189402 0.985606844 1.112274091 1.078244995 1.118439116 1.092632871 1.07944733 1.093174181 1.086959379 1.113354698 1.151605185 1.112779011 1.043798405 1.070486574 1.072672165 1.065599918 1.114058031 1.130307251 226358398 rubisco uncultured bacterium Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria; 0.836238736 0.843351007 0.934321602 0.947226554 0.949546774 0.93065168 0.923283609 0.971595858 0.920565789 0.893692471 0.912835899 0.945889023 0.91607938 0.917765205 0.938118795 0.945747548 0.905186963 301109681 pectin_lyase_Oomycetes Phytophthora infestans T30-4 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;order:Peronosporales;genus:Phytophthora;species:Phytophthora infestans; 0.992080125 1.003106885 0.930657997 1.026879924 0.93136269 0.961913485 0.911079222 0.94634719 0.9493945 0.940023368 0.898147798 0.931920063 0.906235355 0.906264162 0.889724561 0.935758977 1.009409592 0.974967031 189207875 phospholipase_D_fungi Pyrenophora tritici-repentis Pt-1C-BFP Carbon Cycling Carbon degradation Phospholipids superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 0.881111094 0.888221335 0.855189082 0.891238798 0.861773658 0.912292643 0.895450819 0.875321425 0.89811136 0.903002454 0.87639436 0.902990351 0.80968037 0.866301691 0.83659561 0.833730247 0.910103051 0.952622268 38427030 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.970145107 0.925105379 0.94994489 0.920216457 0.957470889 0.950365191 0.931168639 0.919152563 0.949672992 0.93369883 0.916820011 0.902288666 0.943149796 0.951766355 1.01691982 0.934535213 0.941920923 0.935851773 398206251 bphF1 Pseudomonas sp. GM74 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.806517267 0.831721265 0.841034894 0.785817404 0.817930836 0.836372086 0.846673315 374702215 one_ring_12diox Pseudomonas sp. S9 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.891387891 0.879758319 0.879526041 0.852342317 0.932667846 0.908998083 0.891564306 0.900893973 0.873579719 0.880957925 0.873255014 0.882246044 0.837279878 0.844417534 0.844905486 0.919562447 0.823872936 308737199 narg uncultured prokaryote Nitrogen Denitrification NA 0.785244138 0.791852533 385669582 urec Streptomyces tsukubaensis NRRL18488 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces tsukubaensis; 1.013241127 0.929976503 0.956871746 0.973737776 0.989971727 0.958986092 0.944369681 0.955565963 0.976011785 0.963183837 0.938168886 0.936441128 0.946730139 0.9160784 0.873807293 0.891731678 0.962577063 0.968501352 260222561 dehh Curvibacter putative symbiont of Hydra magnipapillata Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Curvibacter; 0.881308309 0.857505164 0.876122689 0.957186754 0.919271511 0.911119926 0.964790956 0.934100343 0.926272703 0.951165753 0.923668105 0.943538192 0.889924353 0.919085831 0.849414013 0.894877608 0.923306378 0.918663095 54027836 arsc Nocardia farcinica IFM 10152 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 1.060491903 1.009548262 1.036406632 1.008345647 1.030104106 1.02870536 1.008267401 0.993954331 1.023920544 1.035156101 1.012507259 0.996987294 1.000901095 1.045299577 1.024362247 0.956667037 1.033314477 1.034444932 163738626 FBPase Phaeobacter gallaeciensis BS107 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 0.875979547 0.993119081 0.866618382 0.966759814 0.818163491 0.815684959 0.815942519 0.840251984 0.826630177 0.875032491 0.863874982 0.86081 0.83594861 0.797371371 349700190 TIM Gluconacetobacter europaeus LMG 18494 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter europaeus; 1.365122223 1.310376206 1.329398352 1.329036823 1.291150118 1.316786824 1.285418444 1.338338331 1.314067109 1.300351623 1.314441552 1.32743507 1.288290519 1.27829921 1.291887392 1.310448941 1.326946119 1.308539232 51870942 endochitinase Rhodothermus marinus Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Rhodothermaceae;genus:Rhodothermus; 1.603311944 1.577679117 1.554182825 1.57719088 1.555101714 1.593796768 1.545351916 1.579583964 1.556681691 1.549112927 1.552149174 1.580676738 1.524029629 1.527870515 1.542698348 1.549126564 1.564971363 1.512984784 359400716 vdh Novosphingobium pentaromativorans US6-1 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium pentaromativorans; 0.823295692 0.782605279 0.839606335 0.826123556 0.835785698 0.846628597 0.823395948 0.853934723 0.84141846 0.808676603 0.8284603 77378693 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.789315173 0.814560906 0.828850309 0.839889093 0.926090771 0.828126255 334696529 merb Corynebacterium ulcerans 809 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium ulcerans; 1.277642407 1.263084032 1.276802055 1.288342169 1.278038707 1.314273594 1.285234126 1.272530092 1.225304925 1.255090329 1.264319934 1.255855652 1.22283966 1.231209791 1.205094673 1.247294399 1.280722773 1.266820608 261407519 cysJ Paenibacillus sp. Y412MC10 Sulfur Reduction NA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 0.799264537 0.831548892 0.824737962 0.833800866 0.962702613 0.801901746 0.83742991 0.905761355 0.83223228 0.800323475 0.891157204 0.819006682 365423675 ara Bradyrhizobium sp. STM 3843 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.872650279 0.896396741 0.927983968 0.911957838 0.894730129 0.913018233 0.890078941 0.915953777 0.912925112 0.928244074 0.851280632 0.912509058 0.868533241 0.945043883 0.840313324 0.910775815 0.965700053 0.947822164 51246881 ccmL Desulfotalea psychrophila LSv54 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobulbaceae;genus:Desulfotalea;species:Desulfotalea psychrophila; 1.003555518 0.990767047 0.99432234 1.018223425 0.991360184 0.997812213 0.965718596 1.005724071 0.995166026 0.985745687 0.95271781 0.993347181 0.983817255 0.954602161 0.977770287 1.001732395 1.016936047 0.959370208 299767098 mnp uncultured fungus Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi; 1.053595138 1.031859987 1.052394855 1.097674701 1.073015355 1.076818223 1.008025316 1.020321001 1.050539093 1.002520564 1.016582439 1.041548015 1.018985581 0.975064088 0.998867614 1.01214865 1.104139769 1.037420076 187476816 cysI Bordetella avium 197N Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella avium; 0.883296509 0.963426634 0.869767785 0.881416974 0.875342687 0.910228675 0.852074092 0.801854994 0.79898753 0.922088979 0.84358967 0.862307543 0.890252317 0.86118039 0.85094975 0.849531668 0.874483089 0.903629985 357386552 urec Pelagibacterium halotolerans B2 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Pelagibacterium;species:Pelagibacterium halotolerans; 0.841433801 0.927420812 0.884423449 0.878626325 0.88509648 0.893130932 0.856661483 0.871332169 0.813381343 0.929689908 0.833410721 0.881496704 0.909340243 0.866695814 0.849678209 0.878450161 0.859454032 0.9058181 170144434 xyla Burkholderia graminis C4D1M Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia graminis; 1.030317244 1.046107377 0.95495506 1.049940106 0.947943819 1.012117373 0.941116134 0.929838596 1.00360841 1.003135985 0.967768812 0.977769412 0.955858367 0.971176909 0.935124401 0.995439432 1.056037335 1.035318682 299140842 amyA Prevotella oris C735 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella oris; 0.834353702 0.811721465 0.864890483 0.920533517 0.841929642 0.81058713 0.849387105 0.88864853 0.881371775 0.81882804 0.947798185 0.866857433 0.834939609 0.842689215 0.798375383 144425 exoglucanase Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas; 0.93501075 0.950718378 0.912630476 0.960711788 0.923248234 0.920403651 0.897281889 0.869789219 0.944249546 0.93632122 0.933949111 0.895367415 0.882686329 0.90744917 0.891170962 0.842259571 0.96933211 0.962764758 90195860 limeh Mycobacterium vanbaalenii PYR-1 Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 1.31223856 1.288514178 1.280654073 1.262396679 1.252259742 1.291228593 1.237762852 1.237095947 1.269497129 1.286261031 1.269605043 1.277685369 1.238971668 1.259458604 1.231047454 1.243800932 1.28729418 1.28793427 325066972 amyA Actinomyces oris K20 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces oris; 0.968814501 0.999579408 0.93522311 1.01186182 0.932104948 0.99630443 0.902852308 0.938954542 0.949692012 0.947428577 0.947067819 0.941508887 0.903802033 0.942964171 0.852671242 0.90438085 0.978327002 1.018385223 190891477 narb Rhizobium etli CIAT 652 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 1.222584195 1.212613278 1.182808914 1.216820778 1.202134965 1.213024767 1.171912785 1.199159503 1.175583303 1.181177072 1.165751302 1.200680443 1.169112662 1.163096393 1.073740544 1.181662577 1.218943683 1.192013742 73534357 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.991642601 0.946933519 0.887177219 1.022917169 0.914774628 0.976629479 0.914863303 0.987222072 0.990225652 0.973720905 0.929432827 0.982578117 0.911093946 0.92502471 0.938667257 0.953895557 0.976298222 0.97246801 308750400 amyA Enterobacter cloacae SCF1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter lignolyticus; 0.907911005 0.938244441 0.910391775 0.903544515 0.946787307 0.921763213 0.921400427 0.904866959 0.948862081 0.911417758 0.942409058 0.917950232 0.913743492 0.840532058 0.818560872 0.854995748 0.895217091 0.906385648 83317100 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.256612403 1.24063992 1.214243011 1.250426813 1.227277205 1.253901726 1.22720765 1.206487016 1.225928618 1.232311126 1.228871361 1.245563141 1.210326109 1.212413935 1.257314698 1.217898091 1.267738015 1.207200513 114705586 arylest Fulvimarina pelagi HTCC2506 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Fulvimarina;species:Fulvimarina pelagi; 0.949334459 0.926544826 0.957313029 0.983242724 0.857721566 0.893355104 0.89757612 0.957688435 0.936144543 0.902117476 0.890887221 0.932781593 0.901298708 0.908882247 0.858591654 0.898370505 0.937165338 0.912343343 123988417 fthfs Microscilla marina ATCC 23134 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Microscilla;species:Microscilla marina; 0.910529344 0.851695152 0.838435736 0.898777905 0.919299073 0.828662005 0.901873448 0.856649175 0.905880179 0.896485554 0.937230071 0.904516545 0.836195499 0.851051205 0.821111456 0.862221223 0.903103841 94983265 silicon_transporter NA Metal Homeostasis Silicon Transport 0.827027725 0.841896897 0.852918914 0.811855803 0.911329067 0.851990589 0.823093611 0.805687117 0.867006073 0.867308855 118194172 urec Cenarchaeum symbiosum A Nitrogen Ammonification NA superkingdom:Archaea;phylum:Thaumarchaeota;order:Cenarchaeales;family:Cenarchaeaceae;genus:Cenarchaeum;species:Cenarchaeum symbiosum; 0.800687408 0.87622824 0.867609081 0.838558663 0.862820711 0.827188055 0.810277327 0.901470512 0.818687166 0.889343377 0.77620469 0.809802517 0.795909457 0.843617227 359819737 cutinase Mycobacterium rhodesiae NBB3 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 0.940977415 0.885260694 0.933906077 0.981215763 0.886976124 0.92384026 0.903809459 0.94433313 0.97027138 0.906660355 0.879989513 0.932252338 0.890931659 0.87844169 0.832188658 0.89479758 0.937654886 0.919457267 258571131 ppx Uncinocarpus reesii 1704 Phosphorus Polyphosphate degradation NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Onygenaceae;genus:Uncinocarpus;species:Uncinocarpus reesii; 0.975307134 0.958188893 0.931459974 1.02960016 0.950530422 0.948472164 0.931490154 0.927673835 0.97358267 0.940146463 0.945773158 0.953005083 0.940559515 0.921597888 0.944385839 0.94558532 0.977397953 0.948032513 151939786 chitinase Vibrio sp. Ex25 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 0.955559137 0.888609647 0.893530161 0.879207244 0.813443328 0.84949004 0.89779521 0.86367779 0.872375676 0.864454405 0.885911145 0.840895591 0.813708081 0.840626091 0.865109934 0.867916504 375007837 chrr Geobacillus thermoleovorans CCB_US3_UF5 Metal Homeostasis Chromium Detoxification superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus;species:Geobacillus thermoleovorans; 1.031572849 0.99147038 1.055195837 1.057168459 1.075030189 1.057687368 1.029075722 1.133452832 1.055783453 1.046243191 1.060236925 1.063002283 1.02192185 1.007098271 1.076410149 1.015923519 1.064365085 1.020003173 3402328 catechol_b uncultured bacterium Organic Remediation Aromatics Other aromatics superkingdom:Bacteria; 1.51060812 1.484830704 1.467346665 1.467285943 1.458497542 1.500596647 1.463105819 1.470205 1.456692971 1.452015747 1.462830113 1.458062461 1.427712908 1.429414693 1.445898454 1.434586298 1.478556273 1.45384607 262198322 pula Haliangium ochraceum DSM 14365 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Kofleriaceae;genus:Haliangium;species:Haliangium ochraceum; 1.09187876 1.136825331 1.081651852 1.078458794 1.103521067 1.124429084 1.109473254 1.11984279 1.092921237 1.096334415 1.151419217 1.081169398 1.106985003 1.052709327 1.102421171 1.070021225 1.084990406 1.095248336 313104774 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.069911688 1.088005506 0.969348823 1.052656237 1.003913617 1.064581937 0.93504104 0.869662516 1.064711238 1.070563185 1.02337191 1.075765799 0.985322268 1.050371978 0.974366003 0.967869785 1.054054179 1.064296264 260862024 ppx Selenomonas sputigena ATCC 35185 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas sputigena; 0.778359188 0.827007295 60475984 rubisco uncultured bacterium Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria; 0.960487866 0.980335499 0.97178353 0.951396492 0.975479079 0.952140668 0.957680871 0.977705098 0.963045877 0.934831322 0.979515111 0.930729633 0.886598909 0.863103529 0.879933175 0.883161205 0.957001375 1.001901218 150034100 nifh Methanococcus maripaludis C7 Nitrogen Nitrogen fixation NA superkingdom:Archaea;phylum:Euryarchaeota;class:Methanococci;order:Methanococcales;family:Methanococcaceae;genus:Methanococcus;species:Methanococcus maripaludis; 0.818439069 0.83883987 0.869115592 0.873274019 0.866607608 0.791280762 0.865220797 0.87310023 0.877832604 0.889295049 0.85181984 0.840202471 0.848718653 0.828327385 120593974 nitrilase Polaromonas naphthalenivorans CJ2 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 1.111272983 1.177406296 1.130125387 1.144960734 1.122368565 1.141141508 1.053464758 1.090227426 1.102671959 1.108995024 1.12570819 1.116599397 1.09056102 1.091778522 1.068856682 1.101204209 1.16456988 1.13742991 124257911 tutfdg Geobacter sp. TMJ1 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 0.787209757 0.832981455 0.824065581 0.789429073 0.827425764 0.851110415 0.844639634 0.821234878 0.833408854 86611381 vana Rhodococcus sp. DK17 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 1.44829713 1.4197265 1.41411053 1.405402387 1.390405456 1.463213296 1.382023043 1.394305657 1.388080462 1.386685886 1.403244913 1.378449094 1.380306482 1.363426042 1.36028932 1.370355647 1.430041563 1.40093514 298541547 pgk Bartonella quintana Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bartonellaceae;genus:Bartonella; 1.043387432 0.937233871 0.921828112 0.932225737 0.890523 0.885769704 0.883617757 0.897933277 0.923398866 0.928125613 0.940236705 0.947282724 0.897348951 0.889423037 0.881358987 0.910140543 0.952861339 0.91019609 113526287 arylest Ralstonia eutropha H16 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 0.79181052 0.847813896 0.821397629 0.836785742 0.843375727 0.8107016 0.843085955 0.888344792 0.885826615 0.844794498 0.831249571 0.903929495 0.856541259 0.901733711 0.839578044 325301860 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.929607546 0.980850727 0.927863562 0.930817767 0.9384969 0.934560175 0.898399055 0.851760636 0.930686038 0.919739881 0.903234155 0.901762602 0.816344033 0.855008703 0.874851808 0.871503012 0.944353593 0.974935207 290570387 amyA Stackebrandtia nassauensis DSM 44728 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Glycomycetaceae;genus:Stackebrandtia;species:Stackebrandtia nassauensis; 0.995448451 0.961707023 0.97079887 1.002848401 0.900094197 0.968094094 0.918706115 0.951220523 0.965752519 0.963289547 0.93593592 0.95777041 0.918927419 0.930301084 0.910868086 0.907635579 1.009388298 0.985704501 257323051 pec_Cdeg Colletotrichum gloeosporioides Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Glomerellaceae;genus:Glomerella;species:Glomerella cingulata; 0.8089969 0.845826522 0.831852062 0.80240266 0.820484785 0.810393469 0.818586216 0.841411924 21388681 one_ring_23diox Rhodococcus sp. YK2 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 0.984814364 1.002203591 0.970963137 0.967805051 0.899635478 0.965906779 0.908669489 0.966405446 0.961560866 0.964215758 0.944350385 0.948721489 0.910734119 1.002608365 0.869293036 0.93296059 0.964426112 0.98799716 54017000 catechol Nocardia farcinica IFM 10152 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 0.887149745 0.931197588 0.913189545 0.91565495 0.908203542 0.905697713 0.925673813 0.940379375 0.86969021 0.860734271 0.84733211 0.908434863 0.919996784 0.836370879 0.850830642 0.82536622 0.915769982 1.316833177 356879587 nirb Azospirillum brasilense Sp245 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum brasilense; 1.053315362 1.032780356 0.98137518 1.021039605 0.979142191 1.00297245 0.954625356 0.996867451 1.027329891 1.00148643 0.921906957 1.033135018 0.921959424 0.948812802 0.961376945 0.973965656 1.03419742 1.052861494 117618319 nrfa Aeromonas hydrophila subsp. hydrophila ATCC 7966 Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas hydrophila; 0.826316029 0.911863375 0.874203 0.888470682 0.8789183 0.854911463 0.841022051 0.766464954 0.853138713 0.851558999 0.861246132 0.833308728 0.844632891 0.871602532 0.880320334 197322318 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.169630421 1.150416629 1.135200754 1.142598997 1.139009024 1.150598738 1.118028339 1.086847496 1.140826617 1.134017888 1.117558263 1.126916453 1.14954141 1.114629389 1.093396209 1.104692405 1.166670849 1.138322172 229335584 Sir Vibrio cholerae 12129(1) Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio cholerae; 1.383094247 1.331369689 1.346254276 1.374543538 1.357008351 1.367745038 1.339018185 1.388128827 1.35880086 1.344183777 1.336257164 1.408853863 1.307250615 1.326294023 1.326264785 1.362065492 1.351155906 1.319410048 383650756 catechol Streptomyces chartreusis NRRL 12338 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces chartreusis; 0.869735116 0.86533373 0.853413313 0.879949923 0.829056788 0.873843892 0.809533538 0.875011948 0.826686697 0.836998598 0.822255874 0.880732623 0.898178785 320135938 amyA Actinomyces sp. oral taxon 171 str. F0337 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 171; 0.881093587 0.860216077 0.860350414 0.946021008 0.828018328 0.843824588 0.928198333 0.906676686 0.858990169 0.9004597 0.891173044 0.938669975 0.87300594 0.880651601 0.903881257 0.910290573 0.885958373 15021242 tfda Streptomyces coelicolor A3(2) Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 0.802476983 0.788304138 0.821807708 0.834750356 239839367 amyA Micrococcus luteus NCTC 2665 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Micrococcus;species:Micrococcus luteus; 1.288190436 1.306541759 1.269344965 1.260881711 1.252297526 1.258453803 1.256637822 1.250686469 1.275483773 1.267989058 1.225308888 1.290764803 1.245165871 1.239597076 1.196549357 1.211953029 1.259975373 1.318648648 145303444 cellobiase Salinispora tropica CNB-440 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora tropica; 0.887699954 0.871619205 0.892159565 0.942564608 0.923538176 0.846536879 0.871895366 0.889821776 0.904515632 0.869993199 0.841152355 0.876353337 0.885290504 0.820025521 0.859297124 0.8591641 0.91669024 0.896175114 380512214 amyA Xanthomonas sacchari NCPPB 4393 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas sacchari; 0.96927677 1.004697909 0.976255145 0.96477182 0.921033897 1.010993592 0.972727763 0.950403655 0.962644563 0.960471086 0.939793215 0.940695969 0.928940138 1.003710316 0.898532802 0.924158776 0.921665833 1.002585748 223714290 arra uncultured bacterium Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 1.015272802 1.027965051 1.028913238 0.986683059 1.004166569 1.038892491 1.008523898 0.970038299 0.993249579 1.055040881 1.085289261 1.002051438 1.011501025 1.017702363 0.969044466 0.976623277 0.977157773 1.024516985 357935650 catechol Burkholderia sp. YI23 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 0.836953252 0.78920635 0.812834837 0.808317972 0.825256144 0.786671611 0.841562319 0.84362981 222099746 pula Thermotoga neapolitana DSM 4359 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Thermotoga;species:Thermotoga neapolitana; 0.793285531 0.882392409 0.878579925 0.874225172 0.854064286 0.784970123 0.868276778 0.865197879 0.847333657 0.833433012 0.843179848 118424413 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.892843576 0.848770353 0.830645671 0.910361397 0.824329933 0.878841511 0.81046416 0.839938438 0.872905193 0.882198504 0.854677758 0.850055926 0.891792061 0.8588908 356882675 nagg Azospirillum brasilense Sp245 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum brasilense; 1.157157145 1.151898485 1.103541523 1.134039988 1.117702072 1.145166773 1.101071667 1.117900867 1.137010334 1.124216282 1.114158235 1.136244382 1.11016128 1.109523374 1.116832154 1.124536172 1.155910035 1.118597315 167945384 ppx Endoriftia persephone 'Hot96_1+Hot96_2' Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Endoriftia;species:Endoriftia persephone; 1.011773836 1.02949135 0.988085709 1.058661869 0.969284376 0.96033383 0.982472311 1.008857314 1.027584181 1.021304793 1.004234279 1.062715085 0.975587492 0.953736256 0.96963821 0.955175002 1.00463626 1.037808754 298251924 endoglucanase Ktedonobacter racemifer DSM 44963 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Chloroflexi;class:Ktedonobacteria;order:Ktedonobacterales;family:Ktedonobacteraceae;genus:Ktedonobacter;species:Ktedonobacter racemifer; 1.101908794 1.127655429 1.030062821 1.10211027 1.05501305 1.105667475 1.043614283 1.066602777 1.049301038 1.052289372 1.033008498 1.029620167 1.042897178 1.036098784 1.019118787 1.03375503 1.065452172 1.088771142 77459481 terc Pseudomonas fluorescens PfO-1 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 0.804705152 0.804341501 0.842066737 0.881691063 0.850590686 0.82685055 0.848359175 0.826389255 0.900582327 0.824686142 0.807201051 0.837277853 0.796431277 0.857476652 54013570 cutinase Nocardia farcinica IFM 10152 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 0.959452481 0.959698822 0.944001598 0.979671709 0.905778828 0.946919125 1.033685235 0.891087202 0.955301378 0.966930451 0.93257374 0.918761942 0.903650846 0.947722287 0.866304221 0.926728493 0.977603618 0.981758139 307352853 dsra Methanoplanus petrolearius DSM 11571 Sulfur sulfite reduction NA superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;family:Methanomicrobiaceae;genus:Methanoplanus;species:Methanoplanus petrolearius; 0.898123217 0.905989266 0.90456894 0.948635863 0.824485965 0.879122896 0.86495273 0.930059543 0.909123014 0.882336755 0.849775143 0.903276112 0.778884663 0.835472431 0.842119774 0.856545196 0.881959727 0.909534607 380766219 mcra uncultured archaeon Carbon Cycling Methane Methanogenesis superkingdom:Archaea; 1.654466049 1.614354691 1.609911873 1.611882993 1.595317997 1.624046551 1.588306541 1.580678177 1.610347541 1.590362757 1.60150948 1.611521757 1.572442026 1.554557052 1.569887874 1.581956321 1.623426261 1.566020143 379057283 Sir Serinicoccus profundi MCCC 1A05965 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Serinicoccus;species:Serinicoccus profundi; 0.820328769 0.81351884 0.830546822 0.809624103 0.86832062 0.853541043 294980602 b_lactamase Zunongwangia profunda SM-A87 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Zunongwangia;species:Zunongwangia profunda; 0.811432176 0.814798471 325918857 ppx Xanthomonas vesicatoria ATCC 35937 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas vesicatoria; 1.135488287 1.126386789 1.152699793 1.147519885 1.143107133 1.138148284 1.164938564 1.163782676 1.136848864 1.098508619 1.130956119 1.115477264 1.083021295 1.020272291 1.057302101 1.086472946 1.139581648 1.108698314 304310494 tehb gamma proteobacterium HdN1 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 0.87107667 0.828199345 0.85366663 0.868061626 0.816123202 0.843866285 0.840705429 0.856822728 0.887264969 1.027886088 0.838473339 0.852008898 0.85938477 0.851695351 225194133 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.974058192 0.886511418 0.934955405 0.960863065 0.965922316 0.91788473 0.966076356 0.986953591 0.961210015 0.93523449 0.928147315 0.928489126 0.868807645 0.868409328 0.885401087 0.846511771 0.936114509 0.961712357 296394858 badh Segniliparus rotundus DSM 44985 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Segniliparaceae;genus:Segniliparus;species:Segniliparus rotundus; 0.912168561 0.957148177 0.996291466 0.957551045 1.059450606 1.048506482 1.081678144 0.940330762 0.96675141 1.062233116 1.063173698 1.004740433 1.066449147 1.011090492 0.971794763 1.033620215 0.950138199 0.969288717 127511439 nrfa Shewanella loihica PV-4 Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella loihica; 1.423617077 1.356306182 1.385866896 1.400806383 1.355178152 1.413548591 1.350400531 1.376487816 1.363723539 1.362838366 1.373917604 1.375700065 1.349259284 1.350386194 1.348930228 1.375654658 1.400658625 1.364231159 325555524 amyA Rhodococcus equi ATCC 33707 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus equi; 1.268317296 1.25949078 1.266917974 1.291093197 1.256147282 1.272280188 1.264545463 1.284957514 1.254803028 1.245120543 1.264098224 1.281538853 1.269346699 1.211817592 1.250196963 1.233306671 1.267974248 1.209704045 422314227 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.9371959 0.92968933 0.942536869 0.888625866 0.881366685 0.947510664 0.886906366 0.875699763 0.86596331 0.992795774 0.845032382 0.867568411 0.952221337 0.966815567 0.856600462 0.903271534 0.905420554 0.9050258 308805693 terc Ostreococcus tauri Metal Homeostasis Tellurium Detoxification superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Mamiellophyceae;order:Mamiellales;genus:Ostreococcus; 0.828471698 0.814994643 0.80522679 0.829846731 0.784422693 0.798765286 0.835069276 0.862685472 0.825407252 0.827567531 118018608 terc Serratia proteamaculans 568 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia proteamaculans; 0.978560695 0.878342528 0.915512987 0.966984663 0.947558571 0.960683002 0.940188301 0.963774669 0.924858731 0.89517615 0.863048266 0.942802199 0.855666371 0.87616719 0.879191386 0.904295476 0.939650656 0.982144501 4249601 urec Actinomyces naeslundii Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces; 0.975225925 0.949692222 0.881833943 0.927392965 0.847833275 0.863146532 0.866351893 0.938463826 0.955720535 0.912984082 0.810689768 0.910938639 0.888780884 0.912797165 0.967251578 71089868 vdh Pseudomonas fluorescens Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.976617679 1.019645536 1.024133245 1.004067486 1.006046827 1.022235581 1.003123456 1.012712346 1.00073355 1.000062896 0.99604358 1.00429184 1.00324088 0.998518149 0.99658353 1.011647453 1.000817291 1.003929885 154159546 fccab Xanthobacter autotrophicus Py2 Sulfur Sulfide Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 1.07148971 1.06847757 1.074871768 1.097653616 1.042139618 1.029121754 1.058444919 1.089247547 1.076790075 1.072037463 1.053656428 1.114438572 1.026137884 1.057100831 1.027696918 1.039828947 1.04013933 1.038371128 52347036 mannanase Bacillus licheniformis DSM 13 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus licheniformis; 0.843832817 0.844033546 0.836308279 268638373 alkb Gordonia soli Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia; 1.202460591 1.183430278 1.17905305 1.200682523 1.19744156 1.206303737 1.165137832 1.160864894 1.179575457 1.128364371 1.181020455 1.173329026 1.146023 1.11662581 1.130466742 1.137472959 1.195924255 1.158487907 347820862 catechol Verminephrobacter aporrectodeae subsp. tuberculatae At4 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter aporrectodeae; 0.952454932 0.94572977 0.877917549 0.930392043 0.888514117 0.923453598 0.922316838 0.909558279 0.955276009 0.964104836 0.913941564 0.915743474 0.887954939 0.922531797 0.891957925 0.872217756 0.938843521 0.94967183 302675657 bph Schizophyllum commune H4-8 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 1.054645836 1.022155432 1.033541267 1.010786463 1.029464448 1.007906128 0.908580434 0.963940408 1.01326858 0.972654779 1.010763577 0.958165697 0.95042499 0.932107453 0.901316806 0.922177187 1.031038532 1.004686312 3724170 bco Thauera aromatica Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Thauera; 0.798358317 0.77507351 149810230 dmdA Roseobacter sp. AzwK-3b Sulfur DMSP degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 1.029339137 1.040995214 1.050571796 1.026515795 1.019200269 1.009145297 1.002209448 1.014960562 1.023675188 1.004746329 1.009294759 1.029266488 0.998847175 0.998022064 1.003165709 1.035586299 1.045138523 1.049373938 150027803 TIM Sinorhizobium medicae WSM419 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 0.936671479 0.917875184 0.951567535 0.945572373 0.94848579 0.951167902 0.938754537 0.957337546 0.97696248 0.93416056 0.951514662 0.949552077 0.935760488 0.914057899 0.903910187 0.918903733 0.931860033 0.956471343 161160558 ppx Sorangium cellulosum 'So ce 56' Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 1.341051208 1.299870928 1.284883066 1.310064998 1.299767839 1.340935305 1.299395364 1.305883999 1.269778687 1.278475838 1.280618086 1.306885553 1.282985905 1.287713648 1.284023828 1.309698474 1.313102963 1.279897437 154695336 Glucose_oxidase_fungi Sclerotinia sclerotiorum 1980 Carbon Cycling Carbon degradation glucose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Sclerotinia;species:Sclerotinia sclerotiorum; 1.088357387 0.982253362 0.9271705 0.853432732 0.977671181 1.128196896 0.923350131 0.898992018 0.903165765 1.000021058 0.975421759 0.93632147 1.007116557 1.09262425 0.914809897 0.974089099 1.142524929 1.059029327 603078 endopolygalacturonase_fungi Sclerotinia sclerotiorum Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Sclerotinia; 0.86178515 0.839338786 0.86593251 0.903073764 0.829048453 0.809266127 0.822182386 0.852581617 0.825492114 0.837638495 0.821241315 0.880148974 0.833810943 164455506 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 1.236949496 1.219706473 1.220354684 1.246625356 1.210974714 1.203745488 1.159761254 1.18375074 1.232123706 1.225849774 1.208756905 1.246126317 1.198595834 1.188175319 1.150421891 1.194963733 1.22144798 1.192107172 302538125 mdlc Streptomyces sp. C Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 0.98142942 0.958234408 0.939900923 0.966704212 0.933750894 0.934408587 0.870816402 0.882119278 0.966145071 0.949738398 0.924364065 0.860149573 0.916438987 0.982733946 0.890900464 0.879970219 0.941807093 0.931301666 164455638 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 0.796332873 0.766101087 196482334 tfda uncultured bacterium Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria; 0.876097002 0.898444325 0.808361043 0.856938352 0.86334059 0.86417416 0.847066458 0.815825822 0.850035494 0.859563474 0.817566302 0.884779304 0.925225722 372274734 amyA Pantoea sp. SL1_M5 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 1.189708716 1.191301032 1.14724751 1.196496643 1.152249152 1.184174483 1.129018299 1.167714228 1.129299868 1.14835833 1.131678789 1.145954055 1.115580781 1.12269102 1.151719076 1.144277983 1.179153208 1.145817283 383782417 amyA Actinoplanes missouriensis 431 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes;species:Actinoplanes missouriensis; 1.105231682 1.124110322 1.091778729 1.133348933 1.102062191 1.091289289 1.085948588 1.103546797 1.098823758 1.125164186 1.069343923 1.118267331 1.054809603 1.101484401 1.06865389 1.063049077 1.091645344 1.116399771 164455670 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 0.953654846 0.843029277 0.862683845 0.859800563 0.856775486 0.844533867 0.859371693 0.849320544 0.860217991 0.829053229 0.783356985 0.81620807 0.873302633 270210916 alkb uncultured bacterium Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria; 0.960958106 0.956286829 0.972398445 1.026222953 0.986542452 0.956259832 0.984120028 1.010562169 1.018636475 0.938516867 0.945625068 0.953167987 0.916534073 0.939357021 0.913059473 0.92119191 0.974691119 0.971337916 374348990 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.873335967 0.896728935 0.867541898 0.896374662 0.823271109 0.879472451 0.827961792 0.880881362 0.874876199 0.86756902 0.84543276 0.908302909 0.899506759 149783143 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.052115638 1.036014566 1.06912401 1.0303165 1.042808634 1.062169508 1.031161337 1.009652135 1.044300092 1.042416769 0.994910229 1.032089849 1.018992841 0.992821063 0.965141638 0.983725996 1.031715066 1.047699783 210634926 acetylglucosaminidase Collinsella stercoris DSM 13279 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Collinsella;species:Collinsella stercoris; 0.834258927 0.823780059 0.796524853 0.814794415 0.817815207 0.848752881 373233016 RgaE Niabella soli DSM 19437 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;genus:Niabella;species:Niabella soli; 0.808829659 0.895060772 0.809009127 0.873239736 0.858062442 0.798117525 0.813649316 0.862413727 56710238 catechol uncultured bacterium Organic Remediation Aromatics Other aromatics superkingdom:Bacteria; 0.807838565 0.770841102 0.800567468 0.807606468 0.795694599 0.846177296 346058532 merb Pseudomonas aeruginosa NCMG1179 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 0.850222549 0.865927713 0.874629443 0.883841829 0.941210292 0.934529207 0.888184388 0.907138066 0.858355882 0.915239648 0.85758933 0.884371526 0.91219903 0.86335636 0.891149983 0.893594779 0.878149585 0.878894384 163758498 vdh Hoeflea phototrophica DFL-43 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Hoeflea;species:Hoeflea phototrophica; 0.83861089 0.833204226 0.869128608 0.847177372 0.786830718 0.825317908 0.808129673 0.863795407 0.876908329 342316494 aoxb uncultured bacterium Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 1.513327612 1.448952811 1.456024684 1.472462167 1.423581888 1.50262155 1.425344971 1.45581562 1.448213701 1.425576313 1.441541821 1.443271725 1.41625593 1.424864921 1.425690623 1.450958376 1.486085104 1.425541112 160917536 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.982039278 1.008584174 0.93604888 0.987905453 0.999070526 1.022596966 0.980890001 0.985124662 0.983169704 0.959724322 0.986695644 0.974262602 0.971763688 0.956842419 0.986790255 0.981432471 0.987160424 0.99344668 373101360 xylg Cupriavidus basilensis OR16 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus basilensis; 1.14256742 1.149560009 1.151004571 1.152423598 1.185629451 1.172754362 1.150033124 1.144387823 1.141059925 1.176669517 1.16185781 1.218513418 1.184522208 1.159024118 1.252292805 1.199839563 1.162721419 1.164687375 84494737 amyA Janibacter sp. HTCC2649 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Janibacter; 0.800752575 0.824965433 0.868310272 0.817198465 0.852062237 0.816744023 0.797892576 0.900366406 0.840725377 0.918756864 357200839 cda Paenibacillus terrae HPL-003 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus terrae; 0.88745163 0.818959358 0.854248075 0.798117701 0.846515149 0.85235903 0.823377037 0.826428226 0.836292555 0.853163639 0.906316816 0.832771609 0.805449081 0.816852372 0.807264085 0.8140977 0.855901645 148657308 pcs Roseiflexus sp. RS-1 Carbon Cycling Carbon fixation 3-hydroxypropionate bicycle superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus; 0.969140718 0.931128468 0.958409075 0.93458526 0.967350831 0.944043795 0.953604655 0.956333287 0.971135079 0.972873817 0.941656684 0.930443009 0.922173795 0.885588203 0.887295628 0.918851338 0.963813011 0.991122932 310791430 cutinase Glomerella graminicola M1.001 Carbon Cycling Carbon degradation Cutin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Glomerellaceae;genus:Glomerella;species:Glomerella graminicola; 1.047021128 0.992420397 1.089453266 1.115051921 1.064590067 1.123005512 1.171632802 1.094719307 1.054441511 1.095757201 1.128908349 1.10098556 1.053824462 1.042491858 1.036923076 1.049920668 1.079093804 1.065497377 363423130 amyA Rhodococcus pyridinivorans AK37 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus pyridinivorans; 0.812166842 0.810523649 0.854152866 0.842352846 0.801162915 0.832283452 0.816615838 168199246 nhh Methylobacterium sp. 4-46 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 1.33701032 1.358670677 1.287236987 1.290552084 1.289269188 1.331792412 1.284777971 1.291110743 1.289433334 1.285869127 1.278654889 1.272024344 1.270601172 1.27564616 1.246030236 1.273171541 1.311260081 1.306256919 256387104 adpb Arthrobacter sp. scl-2 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 0.973092086 0.941596912 0.995322405 1.006449822 0.926356495 0.963081461 0.918785153 0.982128245 0.984484578 0.960031325 0.940408287 0.994248671 0.943033645 0.923542792 0.89942363 0.957911453 1.002220182 0.96769625 147886218 phenol_oxidase uncultured bacterium Carbon Cycling Carbon degradation Lignin superkingdom:Bacteria; 0.809324553 0.793007209 117928665 exochitinase Acidothermus cellulolyticus 11B Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Acidothermaceae;genus:Acidothermus;species:Acidothermus cellulolyticus; 1.238288984 1.224315764 1.201833086 1.191327068 1.160890668 1.189296888 1.158508689 1.19704048 1.205463547 1.189450813 1.19841988 1.213677072 1.137148932 1.152822874 1.123250532 1.163825839 1.205880348 1.200746468 119395258 mcra uncultured methanogenic archaeon Carbon Cycling Methane Methanogenesis superkingdom:Archaea;phylum:Euryarchaeota; 0.933339463 0.902657295 1.058269077 0.984624613 0.919986357 0.927439549 0.952554043 0.915578692 0.973581614 0.971738223 0.989861163 0.988218765 0.927010896 0.931863284 0.91094259 0.919917392 0.990801759 0.956934346 161380507 tktA Oceanibulbus indolifex HEL-45 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanibulbus;species:Oceanibulbus indolifex; 0.868918284 0.940731755 0.905282824 0.966254317 0.911109467 0.972228482 0.889215815 0.949541277 0.884944873 0.917372793 0.925576712 0.939517419 0.890410751 0.898142238 0.878800915 0.877123256 0.938468853 0.937210511 344039014 acetylglucosaminidase Streptomyces violaceusniger Tu 4113 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces violaceusniger; 1.595113723 1.540003212 1.536072849 1.565340847 1.513493935 1.59152672 1.517412277 1.530367097 1.53578276 1.504489998 1.513830574 1.524306103 1.505507258 1.495082719 1.495545578 1.515339044 1.577237946 1.514348722 239506387 amyA Kosmotoga olearia TBF 19.5.1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Kosmotoga;species:Kosmotoga olearia; 0.770000572 0.834443517 21673682 dsra Chlorobium tepidum TLS Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobaculum;species:Chlorobaculum tepidum; 0.80198541 0.826605058 0.777097257 0.807257378 0.829395806 408780487 linb Mycobacterium kansasii ATCC 12478 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium kansasii; 0.87952544 0.857489227 0.823553239 0.889782723 0.821159959 0.832965949 0.855758822 0.801534898 0.83934692 0.816719359 0.835496468 0.906820217 0.854311477 77814270 arsc Shewanella putrefaciens CN-32 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella putrefaciens; 1.067880826 1.064709994 0.973538381 0.989686037 0.931532552 1.012203019 0.960906308 1.0339986 1.014400811 0.990148673 0.9993214 0.975606925 0.976048611 1.020501444 0.934752349 0.95700419 1.020321408 1.032383137 220906104 arsc Cyanothece sp. PCC 7425 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 0.852354067 0.846068109 62906756 dsra uncultured prokaryote Sulfur sulfite reduction NA 0.848388142 0.842505681 0.84326532 0.916246626 0.865976233 0.829622336 0.868969186 0.849460541 0.888119948 0.862425631 0.8195697 0.911131795 0.883790265 0.85078171 390411676 amyA Terriglobus roseus DSM 18391 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Terriglobus;species:Terriglobus roseus; 0.804586679 0.792841792 0.801230639 0.798630979 288942021 terc Allochromatium vinosum DSM 180 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Allochromatium;species:Allochromatium vinosum; 0.910977543 0.902558217 0.853106259 0.912905316 0.802846432 0.882229093 0.866363883 0.936440302 0.979146765 0.852342695 0.841401638 0.834210932 0.809984357 0.826128745 0.85462991 359782323 tktA Pseudomonas psychrotolerans L19 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas psychrotolerans; 1.083981931 1.087442495 1.042657619 1.078906115 1.059613268 1.077325627 0.982626713 1.019248029 1.052543215 1.050194525 1.043564996 1.045960401 1.009281363 1.051743384 1.021258579 1.015979377 1.089812026 1.035030621 254442885 mannanase Verrucomicrobiae bacterium DG1235 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales; 0.848348077 0.923631761 0.892519741 0.922319615 0.882421736 0.874977895 0.84182441 0.853825557 0.902766346 0.886346482 0.858250211 0.877741856 0.891035381 0.849732832 0.812627997 0.827399415 0.894418939 0.917552664 154362234 fthfs uncultured microorganism Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway 0.874351558 0.858579552 0.917489953 0.95173373 0.906933278 0.900044552 0.882815696 0.879382859 0.933856381 0.929246132 0.919831235 0.898136966 0.859625109 0.868622362 0.827447648 0.838020071 0.945034629 0.914569881 221726276 terc Agrobacterium radiobacter K84 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 1.093556068 1.130009686 1.089396958 1.107714048 1.124849933 1.174482743 1.108960128 1.098708514 1.078435019 1.150006725 1.137328733 1.113540541 1.12745347 1.144890395 1.069712297 1.117190513 1.125789998 1.125188994 377562406 cysJ Gordonia otitidis NBRC 100426 Sulfur Reduction NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia otitidis; 1.072873712 1.080501305 1.065092293 1.074759606 1.061264191 1.109749087 1.053993184 1.066221188 1.098349767 1.098018025 1.085825626 1.111260398 1.052158726 1.041527472 1.018089082 1.074605457 1.083183005 1.055329865 46115128 pme_Cdeg Gibberella zeae PH-1 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Gibberella;species:Gibberella zeae; 0.808898568 0.849078103 0.809249184 0.855703456 0.828600769 0.782607571 407198260 aln Celeribacter baekdonensis B30 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Celeribacter;species:Celeribacter baekdonensis; 0.900627732 0.897144966 0.914666764 0.973674713 0.953111824 0.93749531 0.893059882 0.967633997 0.945032552 0.930807609 0.92352876 0.92796088 0.883475731 0.925935408 0.914945664 0.949483851 357393893 endoglucanase Kitasatospora setae KM-6054 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Kitasatospora;species:Kitasatospora setae; 0.958019677 0.983318918 0.98108481 0.992180917 1.003046223 0.980193038 0.99594619 0.983133452 0.955634262 0.959322355 0.981931664 0.913660151 0.874253552 0.887522964 0.870118952 0.834375583 0.954339085 1.022532046 52549158 mcra uncultured archaeon GZfos26B2 Carbon Cycling Methane Methanogenesis superkingdom:Archaea; 0.833031388 0.852603309 0.81097434 0.86853095 0.796967764 0.812293286 0.837424642 0.821450362 0.844136062 0.823343523 0.846835828 0.855788653 37521000 amyA Gloeobacter violaceus PCC 7421 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Cyanobacteria;class:Gloeobacteria;order:Gloeobacterales;genus:Gloeobacter;species:Gloeobacter violaceus; 0.958486973 1.009848172 0.92601866 0.951714043 0.994652555 0.998029313 0.952988174 0.903896204 0.959939196 1.003885991 0.955420325 0.991030188 0.992041578 0.99857701 0.95557021 1.014005951 0.927447165 1.012519492 163744445 GAPDH_Calvin Oceanibulbus indolifex HEL-45 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanibulbus;species:Oceanibulbus indolifex; 1.02304535 0.990690977 1.004670476 0.994737897 1.017964819 1.000785909 1.072193448 1.020249165 1.041041307 1.035597762 0.980285808 1.039776327 0.978046387 1.031746752 0.929993291 1.004230639 0.961137815 0.982562133 78102419 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 1.115859184 1.148939075 1.101665093 1.084448929 1.106873823 1.112101675 1.093245728 1.081272414 1.077881646 1.099471352 1.126938017 1.106935813 1.105216346 1.079099654 1.052958716 1.080549438 1.13993548 1.078815034 326949267 tfdb Pseudonocardia dioxanivorans CB1190 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Pseudonocardia;species:Pseudonocardia dioxanivorans; 0.954229405 0.987181843 0.965109003 0.9685664 1.000294734 0.969289939 0.967689386 0.949113341 0.951169409 0.995478714 0.978220633 0.968604503 0.989408515 0.978920115 0.964180321 0.974816931 0.961864842 269928479 linb Sphaerobacter thermophilus DSM 20745 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Chloroflexi;class:Thermomicrobia;order:Sphaerobacterales;family:Sphaerobacteraceae;genus:Sphaerobacter;species:Sphaerobacter thermophilus; 1.214379251 1.233035673 1.197236064 1.156455308 1.194072873 1.254074637 1.178620851 1.17396204 1.191384536 1.226496529 1.186520059 1.194033301 1.155753409 1.183060386 1.12833198 1.209083721 1.20474331 1.224509998 77463896 norb Rhodobacter sphaeroides 2.4.1 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 1.424585889 1.377996007 1.391914057 1.396004299 1.385453944 1.432936747 1.384516776 1.393877904 1.371830325 1.367669964 1.392822754 1.388254364 1.379586266 1.342945904 1.360180226 1.366640884 1.419401824 1.36190074 288912935 pcpe Azospirillum sp. B510 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum lipoferum; 1.358194582 1.325561981 1.325792193 1.336453437 1.340230733 1.356987 1.312516117 1.317593106 1.317347234 1.312258552 1.324938567 1.33290681 1.321017392 1.275499653 1.315142556 1.314256309 1.363524715 1.304470637 123967446 xylj Sphingobium yanoikuyae Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium; 0.923011522 0.880970343 0.90680716 0.921481192 0.922413095 0.911272725 0.935481783 0.920735328 0.916773534 0.933632247 0.927087561 0.922081812 0.902731588 0.886395907 0.888704253 0.907582574 0.904885226 0.949657108 325672899 urec Rhodococcus equi ATCC 33707 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus equi; 1.418507484 1.377459412 1.385961443 1.40014983 1.391873673 1.424223266 1.368111531 1.376282069 1.383877422 1.348329777 1.368198473 1.38981846 1.368206331 1.33427329 1.362657916 1.359241538 1.411688729 1.364794558 345002754 RgaE Streptomyces sp. SirexAA-E Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 0.771862171 0.799965985 115371850 ppx Stigmatella aurantiaca DW4/3-1 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 0.979705812 0.958530376 0.968487815 1.005441129 0.909593455 1.027682426 0.965928268 0.980820007 0.99308965 0.966182937 0.921197675 0.983628227 0.903085948 0.901188067 0.862551704 0.856654276 0.995013421 0.997979212 94555060 amyA Deinococcus geothermalis DSM 11300 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus geothermalis; 0.885954376 0.88759006 0.860086645 0.918309571 0.90476437 0.897327092 0.882819687 0.889426988 0.883919827 0.900868212 0.889324363 0.872687552 0.861412889 0.79142431 0.806368128 0.917946738 324316626 arsc Deinococcus proteolyticus MRP Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus proteolyticus; 0.78654487 0.800276873 0.769696736 0.803723002 0.807060565 0.793552784 375140302 mult_ring_12DiOx Mycobacterium rhodesiae NBB3 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 1.103616223 1.028555774 0.835035914 0.935686822 0.956114567 0.922725162 0.911817788 1.039934065 0.985240888 0.997009387 0.901283498 0.98065126 0.984153399 0.896767477 0.99298081 0.979743721 334365082 amyA Alistipes sp. HGB5 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Rikenellaceae;genus:Alistipes; 1.164445311 1.065391944 1.187826394 1.132594682 1.159908556 1.115065143 1.130518617 1.103569921 1.13088047 1.087896055 1.090576549 1.157563391 1.108517367 1.073589968 1.118052572 1.097385866 1.080657991 119376796 poba Paracoccus denitrificans PD1222 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 0.947951707 0.920489828 0.946700877 0.963068491 0.921432535 0.927887912 0.910603641 0.914324376 0.930050843 0.952117597 0.940676924 0.92732299 0.900032277 0.911784875 0.886182301 0.890915049 0.94602558 0.952942443 87281077 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.980083589 0.995314956 0.903053736 0.939269395 0.96471201 0.962816694 1.001500912 0.866111232 0.964045733 1.032078809 1.037961412 1.009332487 0.983729349 0.989605922 0.921907898 0.953762538 0.927943415 1.011251158 408781630 alkk Mycobacterium kansasii ATCC 12478 Organic Remediation Others NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium kansasii; 1.252190545 1.283720011 1.227329205 1.219403473 1.221697448 1.244458226 1.208997838 1.200262645 1.22308562 1.220240457 1.205796187 1.209230825 1.200020198 1.155079189 1.137728021 1.177730802 1.249370523 1.218855211 343460141 por_DiC4HB Pyrolobus fumarii 1A Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Desulfurococcales;family:Pyrodictiaceae;genus:Pyrolobus;species:Pyrolobus fumarii; 0.896411813 0.985967626 0.917789384 0.861445697 0.904870328 0.898784964 0.889542186 0.855846949 0.914109284 0.912074001 0.947646636 0.849028912 0.842916963 0.907536204 0.856918466 0.832179492 0.891496323 0.96291288 206677616 vana Rhodobacterales bacterium HTCC2083 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 0.821185612 0.826571708 0.896752221 0.954900748 0.851481062 0.916292249 0.864747905 0.907278714 0.899905705 0.821256464 0.882626188 0.887564217 0.893949399 0.918269597 0.847625041 0.872873152 0.843319999 311230829 vdh Frankia sp. EuI1c Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 1.130508735 1.096378067 1.114424449 1.202422647 1.136032044 1.153441082 1.152423273 1.161183403 1.139700944 1.155984519 1.116150765 1.148526881 1.110218558 1.114396241 1.093337023 1.115357127 1.149946015 1.104220749 7801167 dextranase_fungi Penicillium funiculosum Carbon Cycling Carbon degradation sucrose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium; 0.904500789 0.867429837 0.885383227 0.845355655 0.829761913 0.800475893 0.800563728 0.897787959 0.803309852 0.90414786 0.85083854 257077346 mer Ferroplasma acidarmanus fer1 Metal Homeostasis Mercury Detoxification superkingdom:Archaea;phylum:Euryarchaeota;class:Thermoplasmata;order:Thermoplasmatales;family:Ferroplasmaceae;genus:Ferroplasma;species:Ferroplasma acidarmanus; 0.957373676 0.906733655 0.880977683 0.916764956 0.919683672 0.89839196 0.928894743 0.968890453 0.93815404 0.886243404 0.863493898 0.948294135 0.872996962 0.843522141 0.920024721 0.915118152 0.888131804 0.903145723 353212035 GAPDH_Calvin Hyphomicrobium denitrificans 1NES1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium;species:Hyphomicrobium denitrificans; 0.795384186 0.838829974 0.785804622 0.831353861 114324585 cellobiase Chaetomium thermophilum Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium; 1.08845231 1.107369484 1.079924643 1.103411211 1.038951953 1.132238483 1.046576427 1.076653135 1.068927823 1.129271022 1.082484879 1.045873506 1.027639531 1.046169987 1.009452912 1.059651935 1.105442464 1.106518328 105893048 catechol Burkholderia cenocepacia AU 1054 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cenocepacia; 1.085077066 1.180208326 1.086556045 1.096163207 1.11155914 1.131086481 1.091696803 1.085790406 1.107442641 1.10251294 1.109899529 1.125432581 1.117379415 1.093618572 1.071708475 1.095740644 1.084338789 1.137399788 163783644 nosz Hydrogenivirga sp. 128-5-R1-1 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Aquificaceae;genus:Hydrogenivirga; 0.935225432 0.898561055 1.021014572 0.962915858 0.943930192 0.950084524 0.919434498 0.972164781 0.911356031 1.000264185 0.941662556 0.990119353 0.95643048 0.933823781 1.030331984 0.929644057 0.965502584 0.930769135 355378609 terc Selenomonas noxia F0398 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas noxia; 1.106304007 1.072867177 1.060083344 1.047908809 1.06684891 1.062471246 1.04629277 1.048678534 1.047774224 1.042040618 1.060827558 1.066659734 1.03649525 1.014926339 0.9819994 0.995056504 1.089157839 1.071495241 255010727 acetylglucosaminidase Bacteroides fragilis 3_1_12 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides fragilis; 0.887575276 0.875431996 0.846994503 0.878611569 0.877237094 0.876313844 0.861890041 0.830641697 0.898738508 0.891616905 0.896730366 0.874735237 0.870550293 0.923462272 0.860656722 0.842501931 0.848733706 0.882444232 225024827 terc Eikenella corrodens ATCC 23834 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Eikenella;species:Eikenella corrodens; 1.109391318 1.098519708 1.117678205 1.128377521 1.087267159 1.136944003 1.08521375 1.116485147 1.106408573 1.09986816 1.09850069 1.1363531 1.086761902 1.103666544 1.06102138 1.113596048 1.094639659 1.106074279 306985625 glucoamylase Cyanothece sp. PCC 7822 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 0.800503976 0.873012541 0.829057268 0.933731034 0.793368696 0.800160925 0.864854954 0.798631604 0.825674513 0.809174251 0.868350098 316943133 phn Desulfovibrio aespoeensis Aspo-2 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio aespoeensis; 0.953054292 0.990482407 0.930701736 0.950569483 0.937899114 0.966410254 0.941846667 0.970446294 0.918069437 0.986781523 0.921483059 0.974859458 0.87036854 0.8700485 0.830436114 0.959509789 0.963599171 1.022153504 91201988 amyA Candidatus Kuenenia stuttgartiensis Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Candidatus Brocadiales;family:Candidatus Brocadiaceae;genus:Candidatus Kuenenia; 0.858989738 0.847125222 0.83638383 0.898623157 0.81616564 0.792429478 0.870453877 0.862454065 0.866826188 0.788807802 0.814836585 0.812700681 0.795791796 0.868112897 0.832783778 118172380 cutinase Mycobacterium smegmatis str. MC2 155 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 1.182539682 1.179450018 1.180939353 1.203285531 1.205236835 1.220256452 1.191477172 1.188803941 1.212880319 1.215803032 1.196850749 1.205550258 1.168093516 1.16282166 1.13305632 1.162833007 1.191239992 1.168056955 302541001 RgaE Streptomyces hygroscopicus ATCC 53653 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces himastatinicus; 1.136171749 1.06808718 1.076876223 1.097710622 1.082704299 1.092393485 1.065857411 1.026160893 1.091217834 1.045482188 1.043377762 1.072770182 1.036429952 1.008511228 0.956936886 1.088674252 1.117067223 1.067275712 282948453 chitinase Citrobacter rodentium ICC168 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter rodentium; 0.817319044 0.841641246 0.819551191 0.813189166 0.869349524 0.859285911 0.864668611 0.806103995 0.816921304 0.843700342 0.826278565 0.843694388 111224696 narb Frankia alni ACN14a Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia;species:Frankia alni; 0.944738087 0.999047561 0.969102501 0.995373394 0.986524171 0.982907245 0.970846575 0.97522808 0.992122112 1.003205047 0.984321149 1.027556532 1.005566432 1.002659868 0.94977742 0.960904897 1.015183937 0.933199164 149376271 pcag Marinobacter algicola DG893 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter algicola; 0.913795916 0.88808955 0.923878374 0.90914041 0.898162445 0.929713085 0.901085733 0.897985123 0.912718785 0.900025708 0.860336441 0.905196801 0.848616512 0.881388953 0.803627569 0.936667989 0.94271274 162568581 aoxb uncultured bacterium Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 0.782406899 0.812171139 3982838 endopolygalacturonase_fungi Penicillium griseoroseum Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium; 1.245657491 1.220810617 1.221103664 1.248029873 1.180009195 1.276206338 1.18740793 1.231056435 1.222629636 1.211469306 1.201685729 1.207964622 1.16660696 1.226100899 1.210072738 1.218165605 1.248141031 1.232421597 91682484 rubisco Rhodopseudomonas palustris BisB5 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 1.062990048 1.095368429 1.125704188 1.121398075 1.111371815 1.102537933 1.057682304 1.112324583 1.126299214 1.124626981 1.064732713 1.115474515 1.111238325 1.117051717 1.116794625 1.100051582 1.072447007 1.077619714 421953106 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.039972888 1.007387132 1.007681917 1.018141486 1.018637321 0.996430742 1.035641312 1.013353569 1.035036773 1.031960728 0.955686927 1.005213355 0.980013852 0.958490485 0.93131138 0.943380574 1.028542558 1.04186632 375310878 mannanase Paenibacillus sp. Aloe-11 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 0.925128802 0.918564579 0.900330888 0.964515914 0.888816712 0.930597543 0.908515177 0.898052568 0.947236299 0.922248951 0.902023627 0.921620851 0.87718849 0.900125408 0.864759629 0.876253821 0.960638715 0.934689778 377578676 cueo Escherichia hermannii NBRC 105704 Metal Homeostasis Copper Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia hermannii; 0.78954359 0.802869207 0.973238312 0.839596959 403120727 xylj Alicyclobacillus hesperidum URH17-3-68 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Alicyclobacillus;species:Alicyclobacillus hesperidum; 0.911430206 0.913178519 0.844105153 0.926319658 0.881101288 0.918375635 0.864161819 0.836467905 0.917700016 0.898573383 0.882082165 0.847597945 0.840075384 0.852444254 0.886503788 0.928293625 0.892829765 238023374 mer Burkholderia glumae BGR1 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia glumae; 1.278236596 1.270564364 1.261918626 1.293977468 1.279482137 1.308585578 1.270223987 1.274269508 1.264757845 1.259079386 1.258064253 1.28962608 1.282616323 1.242714531 1.255356875 1.28068939 1.296083792 1.250024817 283949552 nitrilase Conexibacter woesei DSM 14684 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Solirubrobacterales;family:Conexibacteraceae;genus:Conexibacter;species:Conexibacter woesei; 0.79791573 0.866871542 0.858240563 0.794297686 0.818984961 0.882582213 163777270 mer Monosiga brevicollis MX1 Metal Homeostasis Mercury Detoxification superkingdom:Eukaryota;order:Choanoflagellida;family:Codonosigidae;genus:Monosiga;species:Monosiga brevicollis; 1.071723926 1.051141498 1.055610302 1.093512141 1.024588089 1.087243482 1.033499997 1.051942051 1.073386948 1.060438422 1.032785109 1.020998576 0.991263363 1.04053848 0.963062344 1.042546736 1.068613377 1.061641908 14023848 ara Mesorhizobium loti MAFF303099 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 1.090849921 1.064587836 1.116008195 1.055062404 1.066351604 1.0474851 1.064002505 1.030754733 1.051587158 1.103768892 1.082302194 1.06340061 1.037512492 1.033462283 1.010474842 1.028847826 1.048857543 1.075279233 76058152 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.305476163 1.306301533 1.285746105 1.292952308 1.243994633 1.319796994 1.300032508 1.289627616 1.277371787 1.268595148 1.265180812 1.302122322 1.220244388 1.234964501 1.211423119 1.23963827 1.274401742 1.284317474 365901003 exaa(moxf) Bradyrhizobium sp. STM 3843 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.837304377 0.797123969 0.883614824 0.822672116 0.878365014 0.840063193 0.823180219 0.844562512 0.861130117 0.826238578 154245482 tktA Xanthobacter autotrophicus Py2 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 1.126589431 1.11031664 1.05769682 1.128580532 1.031062258 1.134989656 1.071317988 1.088833436 1.081819082 1.103566432 1.077537583 1.093864015 1.025586122 1.045340029 1.001170548 1.070361524 1.124004887 1.136260097 402499707 ben_bcla Rhodovulum sp. PH10 virulence NA NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodovulum; 0.852434072 0.872031842 0.8951642 0.892962331 0.867546484 0.921416024 0.802890742 0.844409578 0.812392272 0.855425306 0.900783339 0.827243025 325681126 bphF1 Ruminococcus albus 8 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus;species:Ruminococcus albus; 0.852477046 0.881189894 0.830977369 0.900034189 0.788586905 0.839930575 0.82225035 0.854988591 0.808458338 0.828004026 0.859050146 0.845929344 0.853917902 62512311 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.86470495 0.843708924 0.884135957 0.901247528 0.895876092 0.88384377 0.879044228 0.92136479 0.901385039 0.841744464 0.889084793 0.838612796 0.839671623 0.81096166 0.833522145 0.850892134 0.895339242 295414358 PRI Roseovarius nubinhibens ISM Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius;species:Roseovarius nubinhibens; 1.05195943 1.089786957 0.999272769 1.01825193 1.011378611 1.018746753 0.976377321 1.008927277 0.996156165 1.030751077 0.9982427 1.049919371 0.988467136 1.016467191 0.991011756 1.000754903 1.030102699 1.062170824 317465865 arsc Pseudoxanthomonas suwonensis 11-1 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Pseudoxanthomonas;species:Pseudoxanthomonas suwonensis; 0.770544253 0.794714327 323365070 nifh uncultured microorganism Nitrogen Nitrogen fixation NA 0.998236671 0.925612851 0.950042986 0.994284877 0.976196126 0.94661258 0.962470105 0.93832331 0.958979706 0.949715572 0.950769019 0.989211915 0.95174955 0.889410023 0.894441767 0.934019982 1.022402664 0.942821774 374846730 cutinase Nocardia cyriacigeorgica GUH-2 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia cyriacigeorgica; 0.992639218 0.963883478 1.011267147 1.032278088 1.021757335 0.975064155 1.016910821 1.008765781 1.038260721 0.977878154 0.994363002 1.070382508 0.935203614 0.933710042 0.912829009 0.931545118 1.023631898 0.984390244 145322396 pchcf Novosphingobium aromaticivorans DSM 12444 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium aromaticivorans; 0.980633982 1.009964356 1.019529444 0.979626008 0.982091483 1.014275337 0.97757604 0.955860185 0.978737561 0.979345521 0.9740769 0.984807795 0.981508143 0.948899568 0.915532885 0.957207147 0.991104274 1.004574513 118474039 pcpe Mycobacterium smegmatis str. MC2 155 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 0.843653902 0.810833085 0.8127433 0.809039735 0.752106107 0.822507593 61220985 tfth Arthrobacter sp. PNP1 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 1.313973091 1.257200115 1.233385731 1.287544893 1.262857023 1.315214329 1.252140873 1.31273358 1.30289914 1.264790908 1.200812919 1.262006674 1.296866533 1.220842317 1.304107071 1.280590423 1.329997806 1.278042157 333930686 trze Serratia plymuthica AS9 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia plymuthica; 1.127350388 1.097655587 1.130768784 1.154466732 1.112805779 1.113810847 1.087929589 1.135217748 1.116270076 1.115721101 1.107539814 1.110655231 1.10068634 1.087818773 1.055344514 1.090412313 1.142034311 1.100358535 162568569 aoxb uncultured bacterium Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 1.136284036 1.106449098 1.089403226 1.101934031 1.101869656 1.191481914 1.129238772 1.088505713 1.081573308 1.161712778 1.12231072 1.143634287 1.108424892 1.116192858 1.063581708 1.109523902 1.068710433 1.10002665 355532531 ara Paraprevotella clara YIT 11840 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Paraprevotella;species:Paraprevotella clara; 1.264466717 1.259881985 1.208546467 1.266023758 1.216511929 1.26241587 1.19895389 1.242379332 1.229508475 1.226953247 1.218534791 1.233307264 1.191763829 1.182084572 1.205755096 1.20182652 1.254092999 1.227412338 32447867 ppx Rhodopirellula baltica SH 1 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Rhodopirellula;species:Rhodopirellula baltica; 0.80027838 0.770494104 169832337 dsrB Candidatus Desulforudis audaxviator MP104C Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Candidatus Desulforudis;species:Candidatus Desulforudis audaxviator; 1.073666297 1.052105424 1.056601269 1.046185182 1.030487963 379988835 dsrB uncultured bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.236491862 1.226386743 1.209041403 1.171764966 1.178639092 1.247287987 1.163205226 1.213817102 1.173759062 1.223663328 1.204688596 1.204813296 1.132242562 1.186010754 1.137935594 1.159823212 1.200800427 1.242192502 307742767 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.033801125 1.029867274 0.99151086 1.049609978 0.993758316 1.016799702 0.984435254 0.989058035 1.018157202 1.004571064 0.987449032 1.004433205 0.970940832 1.011714946 0.961053534 0.970200237 1.033356437 1.020226789 221738036 nasa Agrobacterium vitis S4 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium vitis; 0.901782774 0.849993206 0.875550333 0.862536722 0.839501985 0.887525672 0.872689243 0.838456957 0.887186716 0.875815689 0.890586805 0.872776509 0.8465841 0.818025882 0.851636507 0.86112537 0.868415863 0.875614035 198253525 dehh109 Octadecabacter antarcticus 307 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 0.846718001 0.868017868 0.881963281 0.838770193 0.822679902 0.845735576 0.807152772 0.882498134 0.855603098 299766338 rubisco uncultured bacterium Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria; 0.932656423 0.925997784 0.870098346 0.882784309 0.886438274 0.892453538 0.920592594 0.932047015 0.870531925 0.954453264 0.840959751 302442235 mdlc Streptomyces sp. C Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 1.101979405 1.141208909 1.092659396 1.08690148 1.084138602 1.105735458 1.080281523 1.072318029 1.098657569 1.068954933 1.085202016 1.088575442 1.073669508 1.055230433 1.059246382 1.05131937 1.14088826 1.074437481 304398374 ppx Pantoea sp. aB Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 0.856871921 0.808994629 0.834057222 154150648 rubisco Candidatus Methanoregula boonei 6A8 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;genus:Methanoregula;species:Methanoregula boonei; 1.087881264 1.102804541 1.089384177 1.095543656 1.111621972 1.104956678 1.125175318 1.081613984 1.095288247 1.116511442 1.094342878 1.094177118 1.074501603 1.114095343 1.091347959 1.077290421 1.086985812 1.107003682 313884657 amyA Eremococcus coleocola ACS-139-V-Col8 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Aerococcaceae;genus:Eremococcus;species:Eremococcus coleocola; 0.954654487 0.906867405 0.940925827 0.910519466 0.926710626 0.941375531 0.899550333 0.927776734 0.955228485 0.908636587 0.912894945 0.897067456 0.828174416 0.879177366 0.830407307 0.852310923 0.927074758 0.932807835 284447539 nitrate_reductase uncultured eukaryote Nitrogen N Assimilation NA superkingdom:Eukaryota; 0.87764616 0.87114338 0.874718618 0.883315447 0.892152636 0.827543762 0.882874996 0.854702032 0.880020168 0.838972957 0.874289035 0.838481028 0.796925454 0.825371715 0.941683855 0.815747432 0.842392423 0.856569157 46915642 chitinase Photobacterium profundum SS9 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium profundum; 0.921961335 0.874915803 0.911781028 0.946084889 0.94208695 0.886939492 0.954556332 0.964267438 0.904322612 0.900619208 0.921036863 0.930879287 0.913125848 0.862758893 0.961049 0.907312185 0.852215767 0.876326617 157401497 nifh Methanococcus maripaludis C6 Nitrogen Nitrogen fixation NA superkingdom:Archaea;phylum:Euryarchaeota;class:Methanococci;order:Methanococcales;family:Methanococcaceae;genus:Methanococcus;species:Methanococcus maripaludis; 0.891111237 0.825183994 0.827831998 0.818304566 0.843104112 0.869498159 0.821400461 0.842716901 0.860107993 327177912 fthfs uncultured bacterium Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria; 1.157775338 1.171448236 1.104757114 1.135118841 1.091625224 1.121556876 1.080405466 1.137334528 1.109929866 1.117640327 1.090955194 1.106555692 1.049313959 1.093740456 1.031323489 1.044605591 1.139481562 1.126437765 225791589 chitinase Acidobacterium capsulatum ATCC 51196 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Acidobacterium;species:Acidobacterium capsulatum; 1.024871754 0.962485212 0.998253825 1.028794275 1.011024888 1.001234412 1.021216907 1.03045748 1.006496362 0.957874955 1.009290391 0.992611356 0.962323989 0.955214767 0.926445424 0.920117616 0.997408362 1.005912394 193087034 frdA_rTCA Chlorobaculum parvum NCIB 8327 Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobaculum;species:Chlorobaculum parvum; 0.90514161 0.940738842 0.888252172 0.896715883 0.881452008 0.915401603 0.857503267 0.906378674 0.890904875 0.912835223 0.891921046 0.878034876 0.851810597 0.878468235 0.824543149 0.842706969 0.904402466 0.939006717 146283804 amyA Pseudomonas stutzeri A1501 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 1.374730989 1.352172682 1.377564706 1.374810092 1.33465838 1.350612827 1.323204148 1.353144526 1.341434947 1.337715456 1.346534521 1.361657609 1.308804492 1.314642332 1.32503755 1.368643931 1.347057282 1.334261947 153962706 sqr uncultured bacterium Sulfur Sulfide Oxidation NA superkingdom:Bacteria; 0.900596874 0.906188316 0.831439501 0.889736974 0.85755122 0.942791352 0.868569157 0.861621965 0.873665516 0.940021235 0.871052345 0.886274559 0.905230077 0.926337464 0.905280752 0.875657701 0.943736123 0.949516536 322511794 dsra delta proteobacterium SCGC AAA240-C23 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 1.119460106 1.136998599 1.186580245 1.097891483 1.119455246 1.170350342 1.05379769 1.076148829 1.099717429 1.107372944 1.122283831 1.100829426 1.092132514 1.120214969 1.089935411 1.085159707 1.107074563 1.141772055 171910108 glucoamylase Verrucomicrobium spinosum DSM 4136 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobiaceae;genus:Verrucomicrobium;species:Verrucomicrobium spinosum; 1.088448621 1.108859809 1.109295271 1.121847892 1.088224809 1.11457786 1.123082788 1.064315592 1.070923086 1.140586431 1.128974186 1.11810702 1.076269059 1.07332839 1.056401795 1.072422729 1.166282945 1.134533795 167668110 ccmL Anaerotruncus colihominis DSM 17241 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Anaerotruncus;species:Anaerotruncus colihominis; 0.946895055 1.000199436 0.979290028 0.981435479 1.004282797 1.018425208 1.007442519 1.005754153 0.955274092 0.98812466 0.958484338 1.027071259 0.955992435 0.962114659 0.896374664 0.935182925 0.971761665 1.015497373 21467261 badh Rhizobium etli Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 0.906826672 0.893701761 0.911903972 0.914249199 0.91323786 0.900701575 0.908090568 0.936157701 0.91219685 0.90762408 0.882181421 0.896219551 0.818201611 0.846987135 0.826731319 0.898470356 0.864909788 91799927 PRI Nitrobacter hamburgensis X14 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter hamburgensis; 0.810861608 0.87824545 0.806933957 0.806438913 0.815911687 0.815426508 317117894 catb Alicycliphilus denitrificans BC Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Alicycliphilus;species:Alicycliphilus denitrificans; 1.07885152 1.079658291 1.057296554 1.07719594 1.065954161 1.081870034 1.063616898 1.046262243 1.070493713 1.072491805 1.054188656 1.06858278 1.027202299 1.025868623 0.966730968 1.026770843 1.090046342 1.098026804 402833331 bphF1 Selenomonas sp. CM52 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Selenomonas; 0.808712005 0.783796297 151302179 APS_AprB Desulfocaldus sp. Hobo Sulfur adenylylsulfate reductase NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;genus:Desulfocaldus; 1.016521061 1.027401956 0.992884106 1.026189519 0.982064965 1.01784941 0.933172274 0.965189778 0.978915433 1.040661171 0.991758404 0.994923817 0.971115872 0.954511422 0.9052319 0.960737393 1.030233314 1.038429611 255010023 acetylglucosaminidase Bacteroides fragilis 3_1_12 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides fragilis; 1.148569942 1.066794915 1.124446033 1.122007565 1.101904071 1.11267587 1.128686684 1.150820277 1.099336511 1.098105438 1.12314128 1.121845519 1.057335029 1.030620912 1.071790098 1.088748869 1.143232526 1.102007649 295900224 amyA Mycobacterium parascrofulaceum ATCC BAA-614 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium parascrofulaceum; 1.276366835 1.273413176 1.278550028 1.241832936 1.21956238 1.279883432 1.228685304 1.244621361 1.243784449 1.261621846 1.24776184 1.239393294 1.199101172 1.214676474 1.194059122 1.228386736 1.251733167 1.257030843 357053283 amyA Clostridium clostridioforme 2_1_49FAA Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium clostridioforme; 0.912257208 0.899615793 0.840531157 0.797630124 0.836617353 0.841676978 0.841813697 0.84109025 15075594 tktA Sinorhizobium meliloti 1021 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium meliloti; 0.795625346 0.802011535 0.768971381 0.872189986 390412458 acetylglucosaminidase Terriglobus roseus DSM 18391 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Terriglobus;species:Terriglobus roseus; 0.958810018 0.965347471 0.96689876 0.970662638 0.918120655 0.962565982 0.929305399 0.978755691 0.954747506 0.949979282 0.901650985 0.975167159 0.901558109 0.918493011 0.888673897 0.941149759 0.986338361 0.976738254 371718776 amyA Caldithrix abyssi DSM 13497 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;genus:Caldithrix;species:Caldithrix abyssi; 0.984032668 1.005938927 0.925600678 0.962247574 0.972194117 0.95574023 0.971043088 1.018409923 1.015807725 0.940594932 0.878324597 0.993243216 0.942199874 0.972865508 0.864768075 0.938487722 0.936452439 1.006888086 6693827 inulinase Pseudomonas mucidolens Carbon Cycling Carbon degradation Inulin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 1.28943201 1.263694447 1.282718124 1.29246061 1.275565521 1.269197371 1.270912031 1.312631545 1.277117731 1.262469547 1.277005409 1.292203978 1.27282229 1.218615621 1.249733629 1.258527065 1.281265901 1.226519505 209401960 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.23376046 1.186506422 1.212822847 1.187248102 1.212847761 1.235132768 1.223394579 1.216175639 1.199231588 1.183424669 1.208929374 1.195271917 1.203041645 1.152860918 1.186055797 1.157629235 1.232252377 1.184843136 302444915 pcpb Streptomyces sp. C Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 1.101495637 1.116341797 1.060764857 1.075488094 1.074938281 1.129633949 1.080102708 1.052689952 1.070658496 1.117167243 1.088840312 1.07121936 1.033854501 1.137093095 1.022074209 1.083498616 1.091503471 1.132611955 256585811 bend Saccharomonospora viridis DSM 43017 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora viridis; 1.103503597 1.066393376 1.058324879 1.119857041 1.062121893 1.088997625 1.090890407 1.06840882 1.091840673 1.072403798 1.059851473 1.078146664 1.021142484 1.048402466 1.030864288 1.048176123 1.101775938 1.079194913 197286551 CsoS1_CcmK Proteus mirabilis HI4320 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Proteus;species:Proteus mirabilis; 0.798725681 0.870239436 0.826397482 0.848147179 0.980322352 0.854657332 0.841977651 0.829149475 0.849950681 0.822378049 0.824746951 333028767 acetylglucosaminidase Streptomyces sp. Tu6071 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 1.063598998 1.035984208 1.068702236 1.032921938 1.021567752 1.124082158 1.000444706 1.025706305 1.047304329 1.028224098 1.050554007 1.040793236 1.007370616 1.032747731 1.068108412 1.031783372 1.047015895 1.079230001 302688121 Glucose_oxidase_fungi Schizophyllum commune H4-8 Carbon Cycling Carbon degradation glucose superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 0.891631936 0.929128265 0.911772997 0.932095288 0.937504172 0.934178638 0.879317025 0.900752424 0.912740728 0.920622932 0.905025716 0.937208105 0.901243653 0.918652226 0.891399294 0.932592243 0.920505163 0.945334723 302470916 amyA Streptomyces viridochromogenes DSM 40736 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces viridochromogenes; 1.081723273 1.064191371 1.065456399 1.064306286 1.077744184 1.109611979 1.069434397 1.069789443 1.038043162 1.068837711 1.073673919 1.046691431 1.060034102 1.058416879 1.035932044 1.045241008 1.067173231 1.071492037 126730580 badh Sagittula stellata E-37 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 0.856140114 0.857038863 0.894693452 0.8217717 0.841249448 0.927226403 0.87154846 0.834860576 0.846990367 0.899522453 0.842694073 0.870393221 0.843917434 0.859660664 0.823888276 0.8662114 0.893194958 342861344 cutinase Mycobacterium colombiense CECT 3035 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium colombiense; 1.295352537 1.25050082 1.210626304 1.284954701 1.27562527 1.295952973 1.265593772 1.23231319 1.232479373 1.237268034 1.219113937 1.227581048 1.258805428 1.217949747 1.194359645 1.243015472 1.268032242 1.268204508 206679991 dehh109 Rhodobacteraceae bacterium HTCC2083 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 1.006502315 1.018875506 0.94032318 1.046136497 1.010969077 1.002015581 0.974993891 0.991929129 0.997657322 1.00950238 0.951760867 1.017024689 0.998064194 0.964284854 0.965312365 0.956809847 1.016245895 1.001572597 189210501 lactase_fungi Pyrenophora tritici-repentis Pt-1C-BFP Carbon Cycling Carbon degradation Lactose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 0.878466601 0.829832744 0.862802517 0.91424917 0.90571475 0.884017752 0.879652368 0.815855118 0.868581004 0.824049294 0.881719615 0.915303074 333988879 nirb Mycobacterium sp. JDM601 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 0.819711593 0.79480482 0.827153511 0.794372775 0.807519867 0.833353709 0.855406034 0.795949679 0.810744492 0.836914482 0.837467231 3378434 nahf Novosphingobium aromaticivorans Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 1.030877954 1.037453072 1.052254571 1.079699339 1.088389146 1.102659227 1.079151139 1.069016053 1.08396474 1.076282689 1.047890101 1.09045293 1.068404482 1.080173673 1.086238264 1.034691785 1.063530051 1.041242522 365177736 mer Sinorhizobium fredii HH103 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium fredii; 0.770066245 0.816236386 0.830590013 0.811744365 0.823448496 0.822552443 0.824418283 170748962 mer Methylobacterium radiotolerans JCM 2831 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium radiotolerans; 1.173923693 1.12497911 1.15630796 1.159285479 1.110581144 1.134971932 1.096387043 1.13164137 1.152675337 1.112643591 1.140057441 1.147830014 1.132970508 1.146634403 1.112399602 1.125908246 1.168286208 1.13150758 379051104 chitinase Salmonella enterica subsp. houtenae str. ATCC BAA-1581 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 0.948366121 0.897796285 0.905202879 0.896601325 0.924444693 0.932593298 0.922059792 0.947876168 0.925925344 0.926710229 0.866950579 0.903608034 0.907836994 0.85345233 0.836270755 0.89973869 0.941448765 0.933031093 156446889 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.916315449 0.927795802 0.963975845 0.909449909 0.886566438 0.911482982 0.869078907 0.814173029 0.926762138 0.924546342 0.910050488 0.862765129 0.830599802 0.887364668 0.838186279 0.93239736 0.965836431 422314041 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.807667598 0.921900341 0.817336121 0.822107052 0.810518101 0.782121075 0.85842902 0.789255404 0.830887336 0.800277214 0.879289206 289185423 amyA Clostridiales genomosp. BVAB3 str. UPII9-5 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;species:Clostridiales genomosp. BVAB3; 0.922523404 0.95968914 0.988948112 1.05751865 1.005658295 0.927665738 1.015172427 0.93468663 1.017790426 1.017412171 1.024594806 1.05293836 0.937483222 0.943284878 0.964971963 0.932399585 0.892871006 0.915364521 385677876 catechol_b Amycolatopsis sp. ATCC 39116 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis; 0.992908925 0.953817912 0.985118098 0.986472385 0.958564442 0.98426691 0.981722359 0.99440823 0.919898047 0.957304117 0.92374008 0.993148989 0.91784633 0.984451708 0.946037359 0.913510272 0.972880593 0.977285762 260088754 acetylglucosaminidase Streptomyces flavogriseus ATCC 33331 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces flavogriseus; 0.931410143 0.904183656 0.890213823 0.886802375 0.891793523 0.923584816 0.905803216 0.941264989 0.870431407 0.864620679 0.878958167 0.887082568 0.898550246 0.853547331 0.849644599 0.823186288 0.924334996 0.905850667 145591430 dsra Pyrobaculum arsenaticum DSM 13514 Sulfur sulfite reduction NA superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum arsenaticum; 0.803928421 0.838341179 0.80078217 0.847756971 29137736 narg Salmonella enterica subsp. enterica serovar Typhi Ty2 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 1.007016871 0.925410593 1.036688336 0.958731536 0.961385539 0.928117259 0.893304188 0.93402618 0.991619183 0.913481687 0.990278842 0.987256904 0.946767487 0.937066727 0.926649918 0.944023001 0.960385566 0.964015004 334731350 cueo Ramlibacter tataouinensis TTB310 Metal Homeostasis Copper Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Ramlibacter;species:Ramlibacter tataouinensis; 1.216823697 1.201355976 1.194600443 1.180759718 1.194083174 1.208192969 1.198948309 1.192396341 1.182213826 1.204120614 1.202308633 1.20330752 1.164298818 1.154476297 1.135121478 1.183268706 1.206565606 1.224169276 333901936 tktA Pseudomonas fulva 12-X Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fulva; 1.142886629 1.106584482 1.097095333 1.122783965 1.077051664 1.109307754 1.072702758 1.111924341 1.127853468 1.080066872 1.121344664 1.106655387 1.06841516 1.016063667 1.06853316 1.064549214 1.151447235 1.073395317 113934988 xylanase Caulobacter sp. K31 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 1.060663373 0.995475958 1.018592985 1.04041813 1.002800285 1.00626489 1.010999323 1.034045811 1.00462992 0.982041774 0.986434671 0.975651942 0.952548244 0.940308713 0.902003987 0.945397929 1.018146152 0.999368009 269790966 ara Thermobaculum terrenum ATCC BAA-798 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;genus:Thermobaculum;species:Thermobaculum terrenum; 0.953266315 0.980508691 0.903709763 0.889873743 0.945149139 0.952374279 0.921576406 0.982756597 0.909808877 0.989461218 0.912606574 0.944215865 0.942636101 0.94327229 0.892109659 1.005519563 0.956342734 0.961962968 395775137 badh Streptomyces acidiscabies 84-104 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces acidiscabies; 0.908066023 0.947194433 0.926188176 0.929414577 0.930643327 0.918393048 0.896215181 0.888259178 0.895384652 0.960173307 0.90907771 0.934546606 0.911077119 0.943229818 0.889096082 0.93531024 0.927631318 0.942789544 226364828 xylj Rhodococcus opacus B4 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus opacus; 1.042275844 1.119014341 1.023488642 1.034513472 0.987812392 1.062181348 0.959350629 0.99012729 0.999546613 0.996825838 0.992745396 1.015821263 0.982250588 1.014382865 0.975227852 0.980470953 1.052156616 1.044686925 323144703 amyA Succinatimonas hippei YIT 12066 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Succinivibrionaceae;genus:Succinatimonas;species:Succinatimonas hippei; 0.837037616 0.848025708 0.844938207 0.801879021 0.81925199 0.857994136 0.862781665 0.824952675 0.819610841 0.85971884 0.850202926 0.852834336 0.846624442 0.846738696 0.837004662 0.869670958 383774919 xyla Bradyrhizobium sp. S23321 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.887605267 0.90338482 0.856935715 0.846191453 0.83247796 0.901016514 0.831412821 0.825957748 0.839263877 0.809338599 0.814183326 0.875630134 0.915024936 113902067 terc Salinispora tropica CNB-440 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora tropica; 0.899162325 0.860827338 0.901490206 0.911548604 0.872555557 0.883726206 0.913092866 0.877401283 0.901145059 0.843118006 0.851626746 0.859466943 0.853494317 0.87018911 224823770 terc Pseudogulbenkiania ferrooxidans 2002 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Pseudogulbenkiania;species:Pseudogulbenkiania ferrooxidans; 0.995117105 0.987437668 0.937900533 0.987234804 0.912531478 0.954921956 0.960542847 0.964757891 0.965453198 0.92516358 0.913717806 0.963022948 0.887289636 0.911898763 0.857636271 0.878349497 0.978483204 0.961040343 307129496 xylanase Dickeya dadantii 3937 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya dadantii; 0.9401173 0.927412937 0.894593536 0.939265476 0.889599218 0.86504867 0.890301279 0.889388324 0.936291657 0.892116215 0.9072875 0.882603785 0.844142841 0.836300762 0.885007649 0.91881907 0.9084449 73538232 one_ring_12diox Ralstonia eutropha JMP134 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 1.116606228 1.106225335 1.084407174 1.091948997 1.04371476 1.092168677 1.022029876 1.061227625 1.049706563 1.058413818 1.061108526 1.080864778 1.057413225 1.050643369 1.029194103 1.078879245 1.108416364 1.09515063 299471541 actin_Stramenopiles Ectocarpus siliculosus Other Phylogenetic NA superkingdom:Eukaryota;phylum:Phaeophyceae;order:Ectocarpales;family:Ectocarpaceae;genus:Ectocarpus; 0.901944756 0.920238114 0.868448681 0.828145839 0.837787319 0.83336391 0.842841573 0.870465506 0.890110607 0.795798373 0.819040721 0.852026253 0.802265878 0.840405807 0.846494036 0.84972286 119876197 linb Stenotrophomonas maltophilia R551-3 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 0.835935749 1.041176235 1.029914835 0.835695191 162707916 catechol uncultured bacterium Organic Remediation Aromatics Other aromatics superkingdom:Bacteria; 1.033706748 1.014370096 1.005243699 1.029791589 0.990951431 1.019824598 1.011365681 1.025725853 1.018331017 1.023885659 0.999222773 1.01892267 0.956962126 0.973279778 0.914041858 0.974782746 0.993601654 0.96117219 164562254 xylanase Pleurotus ostreatus Carbon Cycling Carbon degradation Hemicellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Pleurotaceae;genus:Pleurotus; 0.878191743 0.830007939 0.829828982 0.924056554 0.846142408 0.812038362 0.892225363 0.85074891 0.790521222 0.798202463 0.828827522 0.874309159 0.875043801 256392772 ara Catenulispora acidiphila DSM 44928 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 1.171117822 1.15904191 1.142743202 1.155539156 1.150857257 1.185580371 1.145174857 1.127578983 1.128543549 1.130215599 1.150778294 1.132138146 1.145664044 1.118022023 1.117018687 1.123732243 1.152159896 1.11838809 197713143 catechol_b Streptomyces sviceus ATCC 29083 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 0.790312587 0.804694347 0.81443907 0.835786162 145702471 3HP_CoAs Metallosphaera sedula DSM 5348 Carbon Cycling Carbon fixation 3-hydroxypropionate/4-hydroxybutyrate cycle superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Sulfolobales;family:Sulfolobaceae;genus:Metallosphaera;species:Metallosphaera sedula; 0.83823226 0.965705286 0.927133564 0.878510805 0.864977232 0.911004164 0.867062684 0.859121504 0.877984372 0.890767562 0.85687356 0.847591075 0.861136148 0.903573489 0.895055947 0.892133144 0.990459933 0.938753893 2246754 one_ring_23diox Pseudomonas putida Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.839430129 0.835875012 0.870033278 0.784855123 0.823124904 0.833749603 0.82055305 0.843281856 0.826343128 0.819138608 0.830939114 0.827674648 74056076 SoxB Thiobacillus denitrificans ATCC 25259 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus;species:Thiobacillus denitrificans; 0.833614269 0.852196773 0.883785816 0.918036532 0.905759178 0.861434489 0.912660339 0.884415764 0.895598491 0.898547808 0.899993499 0.882606745 0.825335836 0.789915824 0.814342392 0.838098184 0.903889732 0.891738513 372278577 alkb Oceanicola sp. S124 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola; 0.817701103 0.811185599 0.802774474 0.804612987 0.829969488 0.857479259 116687097 mhpa Burkholderia cenocepacia HI2424 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cenocepacia; 1.131961986 1.136607026 1.105602188 1.092522718 1.036707675 1.104118574 1.059849865 1.207082268 1.107767423 1.088808932 1.087269229 1.069248316 1.042809817 1.058438311 1.037140406 1.081047442 1.124043113 1.127329934 41407367 amyA Mycobacterium avium subsp. paratuberculosis K-10 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 0.787171314 0.803388348 0.80892909 0.867339166 83771612 nitrilase Aspergillus oryzae Organic Remediation Aromatics Other aromatics superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 1.01703089 1.00448204 0.994519112 1.06208072 1.009740163 1.047268588 1.076992638 1.047988859 1.076320401 0.991893346 0.997103816 1.023723303 1.001671118 0.969171956 1.039585751 1.011983609 1.049516204 1.016912892 125497235 pula Streptococcus sanguinis SK36 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus sanguinis; 0.811931671 0.854083459 0.820875702 0.860001545 0.906446447 0.858924192 0.894186008 0.863172933 0.847929786 0.859556405 0.842265337 0.878184128 0.827836031 0.843965828 0.849673717 0.838443202 0.840295533 325979728 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.886759133 0.885411843 0.867364154 0.862234463 0.836199717 0.855011249 0.857226318 0.894832789 0.865290322 0.844200957 0.840938424 0.81069588 0.861848477 0.841586782 0.834801008 0.883018591 0.897061762 186466867 ccmL Nostoc punctiforme PCC 73102 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc;species:Nostoc punctiforme; 0.809468557 0.833289576 0.785727181 0.833202439 0.822475466 0.809419901 0.802320266 0.883977194 0.75327639 0.829292373 312960146 vana Pseudomonas fluorescens WH6 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 1.073252493 1.1327998 1.074278968 1.088907405 1.075263843 1.067257234 1.049564837 1.090860196 1.088730518 1.062520998 1.066186976 1.075505607 1.057024801 1.01128977 1.015360341 1.047878459 1.078061271 1.075405709 302915477 glucoamylase Nectria haematococca mpVI 77-13-4 Carbon Cycling Carbon degradation Starch superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Fusarium;species:Nectria haematococca; 0.920863995 0.882712922 0.834026316 0.879024753 0.961545315 0.889227067 0.896415553 0.96224484 0.933878704 0.872176233 0.907149022 0.955676724 0.942268458 0.898806572 0.842883123 0.917678824 0.950438566 0.823757507 87080642 amyA Arthrobacter globiformis Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 0.970843069 1.014538967 0.953123423 0.998837885 0.939436255 0.972734849 0.94883733 0.98055205 1.00194773 0.983188494 0.900829637 0.935240974 0.869298297 0.967522166 0.810698225 0.90588106 1.014998033 1.039601694 164455700 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 0.870805409 0.90127333 0.892134986 0.866844242 0.899259026 0.861353696 0.905743748 0.858276849 0.882363122 0.861493607 0.826948512 0.905856699 0.90019269 0.888963899 0.915190036 0.913311551 0.948792807 326446511 endoglucanase Streptomyces clavuligerus ATCC 27064 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces clavuligerus; 1.069882104 1.023368813 1.034077093 1.034144401 1.045841966 1.068705451 1.061187134 1.086207712 1.03583395 0.996594339 1.064951783 1.044469562 1.063677813 1.006633831 1.024352678 1.03732748 1.053377919 1.041980675 226953418 b_lactamase Acinetobacter sp. ATCC 27244 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 0.996059108 1.02165089 0.990697152 1.104724226 0.959791818 1.022461802 1.085807904 1.069879365 1.053565749 1.01127903 1.013477941 1.049807204 1.003580812 0.956075625 0.91387229 1.000471102 1.023565489 1.021752634 111149272 amyA Frankia alni ACN14a Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia;species:Frankia alni; 0.855749212 0.951826653 0.866438276 0.912121586 0.845623261 0.893285959 0.813355107 0.818792044 0.89528585 0.909197897 0.875975002 0.908925524 0.873567783 0.845634509 0.867183003 0.905314508 0.910089107 146192102 catechol Bradyrhizobium sp. ORS278 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 1.116006506 1.117566971 1.100442671 1.112564358 1.101170752 1.123428866 1.070415963 1.100292566 1.088821713 1.08139709 1.092441735 1.08816312 1.109031739 1.083589828 1.068231663 1.069792859 1.106451243 1.080103854 119387816 ben_bcla Paracoccus denitrificans PD1222 virulence NA NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 0.955121878 1.010473761 0.973665664 0.982811348 0.926826036 0.973185902 0.953311147 0.966440686 0.971091675 0.978586289 0.957507643 0.936411943 0.928628104 0.937143446 0.879818311 0.878887134 1.031327277 1.020521797 152056 amie Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 0.842104891 0.877394202 0.872133654 0.868292163 0.84556238 0.84526749 0.878194206 0.789324838 0.850865279 118667595 arsc Delftia acidovorans SPH-1 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 0.834479704 0.853476639 0.851628228 0.828825038 0.865349914 0.824285245 0.847860513 0.851914117 0.817749668 0.864176083 0.888187737 340518748 dehh109 Trichoderma reesei QM6a Organic Remediation Chlorinated solvents NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Hypocreaceae;genus:Trichoderma;species:Trichoderma reesei; 0.808727615 0.850133512 0.841816501 0.829665421 0.820981608 0.860369954 0.810742767 0.812486894 0.801257133 0.863073019 0.893646765 0.893179108 0.892922188 0.902763251 0.820872617 0.915747519 167348367 mult_ring_12DiOx Caulobacter sp. K31 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 0.845717672 0.917770503 0.820538692 0.880610953 0.826823969 0.863105277 0.818705265 0.8815928 0.918842708 0.830698402 0.820607808 0.801981381 0.882297197 0.879280439 0.900733757 209521285 rubisco Burkholderia sp. H160 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 0.860206463 0.781035586 0.837193603 0.808968725 0.824080003 0.828704726 0.831426499 0.815642513 0.842742347 0.855884109 0.843472528 0.814731887 0.797436607 0.796201941 0.826909749 0.862852022 117675715 ppk Cryobacterium psychrophilum Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Cryobacterium; 1.23989684 1.197416227 1.185289851 1.204638715 1.173333387 1.208950877 1.185582809 1.199099726 1.186535045 1.169087872 1.154672285 1.192308003 1.136717287 1.144265779 1.123000558 1.176571418 1.217720713 1.201741447 296115738 acetylglucosaminidase Gluconacetobacter hansenii ATCC 23769 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter hansenii; 1.162064214 1.118939125 1.069514482 1.143517707 1.083136032 1.096411381 1.071265555 1.116400763 1.11352505 1.086105086 1.067910688 1.115754589 1.035621773 1.042356023 1.00003371 1.043970388 1.140258309 1.170611649 398355246 exaa(moxf) Sinorhizobium fredii USDA 257 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium fredii; 1.104098582 1.10780894 1.121468348 1.093950613 1.09542145 1.143707988 1.088503325 1.113527501 1.11350691 1.062855194 1.156285347 1.100498401 1.016463687 1.084968712 1.045551378 1.057076174 1.061995315 1.109162833 158523836 dsra uncultured bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.802275385 0.794033694 0.827413863 0.822747396 0.802539515 0.784635323 0.824797243 0.806188173 0.832062651 209520435 linb Burkholderia sp. H160 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 0.949379502 0.962097182 0.897820757 0.904765914 0.902044324 0.917531795 0.913837754 0.878353619 0.92920159 0.920669671 0.911714928 0.903968942 0.895094456 0.867492204 0.853163803 0.914002208 0.926833879 0.926544366 119898644 arsc Azoarcus sp. BH72 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 1.363404426 1.328684305 1.308580144 1.346360448 1.309571406 1.339841358 1.31217673 1.32293634 1.324601955 1.310009601 1.306501117 1.340086326 1.297210747 1.292164339 1.31477203 1.350982105 1.354821112 1.287754861 300390295 fthfs uncultured bacterium Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria; 0.809370334 0.805670511 0.828225884 0.801176436 0.795637322 0.904302864 0.797018855 0.797253821 0.830241596 0.815542284 0.782079713 0.847652179 365896455 TIM Bradyrhizobium sp. STM 3843 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.949072162 0.844617991 0.875947748 0.842968702 1.03652627 1.088244368 1.08839227 0.888706628 0.815862387 1.068726624 1.070238184 0.883326615 1.00093465 1.100667948 0.974623347 1.060380626 0.897326963 0.973134523 365893995 SoxA Bradyrhizobium sp. STM 3843 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.914675583 0.968760231 0.898641372 0.939120417 0.944320588 0.937211538 0.83652783 0.888955066 0.863554378 0.926072762 0.918307815 0.922117317 0.907790707 0.950465145 0.919341676 0.917919354 0.979231081 260850322 mnp Lactarius fulvissimus Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Russulales;family:Russulaceae;genus:Lactarius; 0.843697518 0.918281679 0.883885475 0.887163901 0.896641477 0.903994625 0.893197828 0.912572461 0.904052609 0.872664751 0.840811321 0.892583758 0.821692122 0.831993761 0.825472703 0.834548875 0.850899133 0.876969116 296284472 phytase Citromicrobium bathyomarinum JL354 Phosphorus Phytic acid hydrolysis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Citromicrobium;species:Citromicrobium bathyomarinum; 0.998841554 0.975031597 0.911100858 0.987889048 0.984934228 0.927995954 0.936917793 0.970358789 0.958000402 0.929272229 0.932648028 0.942149342 0.961524081 0.912725571 0.875256717 1.000122465 1.080619441 0.949292999 359273595 ccmN Synechocystis sp. PCC 6803 substr. PCC-N Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechocystis;species:Synechocystis sp. PCC 6803; 0.810549462 0.825478664 0.825767441 0.793781459 0.849029206 0.834547333 0.790117349 0.801141774 0.801233185 0.814975842 0.871898747 315412059 amyA Micromonospora sp. L5 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Micromonospora; 1.398224392 1.388539987 1.363150045 1.389116462 1.359272429 1.41536439 1.36153672 1.365117359 1.358868676 1.365526325 1.373873997 1.35518743 1.323389226 1.326231583 1.301279679 1.354705044 1.392474293 1.359023908 151368477 phenol_oxidase Tricholoma terreum Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Tricholomataceae;genus:Tricholoma; 0.782148713 0.792264762 0.790388551 0.824712462 0.82223735 0.807228217 0.970863662 0.820957915 367048837 badh Thielavia terrestris NRRL 8126 Organic Remediation Aromatics Other aromatics superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Thielavia;species:Thielavia terrestris; 1.101380971 1.064724269 1.053608679 1.096524309 1.084618625 1.06778403 1.050837838 1.068978968 1.060724389 1.060560632 1.037604592 1.086371248 1.064248573 1.04443923 1.057128881 1.049500389 1.085424329 1.073030716 115377085 ppk Stigmatella aurantiaca DW4/3-1 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 0.793254448 0.842818934 0.817075921 0.790447323 0.822957405 0.852835864 164455806 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 1.096961003 1.09557615 1.059870001 1.076920809 1.053859553 1.06748175 1.021374584 1.045077449 1.050742611 1.065290626 1.039814387 1.061658908 0.994918099 1.03833175 0.9388001 1.0116706 1.070130195 1.109609301 210160317 acetylglucosaminidase Collinsella stercoris DSM 13279 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Collinsella;species:Collinsella stercoris; 1.156430407 1.089284103 1.08229835 1.157521531 1.094003023 1.133998237 1.100538849 1.110483714 1.077270635 1.070688016 1.081062408 1.097497661 1.076847287 1.017580581 1.026933223 1.081569785 1.131134102 1.089212473 26278886 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.917101928 0.966604563 0.865781444 0.946386326 0.905125516 0.96697686 0.854160737 0.86141393 0.940756373 0.913326552 0.860739555 0.883716571 0.875258411 0.919385866 0.915035392 0.890351366 0.944659876 0.968363098 91787939 pcpe Polaromonas sp. JS666 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 0.759704862 0.832906286 349792380 nifh Thiorhodospira sibirica ATCC 700588 Nitrogen Nitrogen fixation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thiorhodospira;species:Thiorhodospira sibirica; 0.787805761 0.841466686 0.854206846 0.862512106 0.799450279 0.83555224 0.802804571 0.797129483 0.816889532 1.024978537 17232055 FBP_aldolase Nostoc sp. PCC 7120 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc; 0.888316026 0.825179804 0.823965899 0.909137679 0.841831388 0.866307793 0.85599263 0.885465221 0.894167863 0.833532428 0.87911584 0.8517462 0.855765424 0.843038592 0.876298548 0.874124333 302550937 amyA Streptomyces viridochromogenes DSM 40736 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces viridochromogenes; 1.07242375 1.045911243 1.04801685 1.064661834 1.024590547 1.049003767 1.036393369 1.043294612 1.039708357 1.054537092 1.032973548 1.042294866 1.063337153 1.028277969 1.046688106 1.013254009 1.061176705 1.049532337 260062448 amyA Robiginitalea biformata HTCC2501 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Robiginitalea;species:Robiginitalea biformata; 0.915062202 1.005467606 0.919689872 0.920679405 0.863629965 0.906965301 0.844256047 0.922773402 0.920283083 0.931337004 0.902224664 0.906614027 0.895906579 0.936614175 0.897112133 0.901572084 0.940647785 0.914637862 89899022 FBP_aldolase Rhodoferax ferrireducens T118 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Albidiferax;species:Albidiferax ferrireducens; 1.252290689 1.203984499 1.236585132 1.262734836 1.26530409 1.207684919 1.235606466 1.27799295 1.254714056 1.196038551 1.248398435 1.309538167 1.242869568 1.181386177 1.255266876 1.294288071 1.242535201 1.181071664 70930952 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.027882514 0.941243987 1.009892223 0.961969185 0.942730221 0.866394012 0.954979391 0.85794995 1.05477606 0.950122424 0.979120515 0.94270263 0.953160709 0.861303523 0.91265037 0.888263532 1.004742642 0.966155462 118740910 dmsa Enterobacter sp. 638 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 0.90595633 0.923641226 0.908617907 1.031060523 0.920417172 0.945152103 0.996008473 0.967830026 0.991081195 0.893931238 0.889337544 0.993477271 0.876651721 0.85790779 0.833990451 0.876152548 0.949471654 0.9441849 312961482 tktA Pseudomonas fluorescens WH6 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 1.007604957 0.888874605 1.111026431 0.948405362 0.914267751 0.892082194 0.921912727 0.859606999 0.937210738 0.956616651 0.802829153 0.918338625 0.91307973 0.822383951 0.939668347 1.039241964 0.918613525 256397567 amyA Catenulispora acidiphila DSM 44928 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 1.405265102 1.397560703 1.35216942 1.388244524 1.354741233 1.396060434 1.345402597 1.334651052 1.34762848 1.343222544 1.378816488 1.388427154 1.362110452 1.342800153 1.347016336 1.353445287 1.375749024 1.328795098 149202329 amie Roseovarius sp. TM1035 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 0.883120565 0.906696409 0.840260624 0.911570349 0.855352389 0.905943602 0.900751083 0.888194431 0.901524566 0.916428397 0.845834957 0.914972311 0.830221409 0.816118333 0.816608618 0.853617785 0.91061982 0.926217443 148834499 dmsa Vibrio shilonii AK1 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio shilonii; 0.947701676 0.897700397 0.974106034 1.00364784 0.971967767 0.952393908 0.946283194 1.010806674 1.064201452 0.946192754 0.913223098 0.907782986 0.963132339 1.013255263 1.022019801 0.922764872 1.016823413 1.002137746 126236567 mult_ring_12DiOx Mycobacterium sp. JLS Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 0.974417421 0.926022887 0.973082188 0.942576407 0.901059287 0.927923047 0.958115542 0.862862667 0.920177325 0.927292302 0.925548084 0.922573416 0.916626284 0.904973107 0.839469276 0.8942775 0.942604357 0.943260706 311218778 terc Rhodomicrobium vannielii ATCC 17100 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Rhodomicrobium;species:Rhodomicrobium vannielii; 0.837869701 0.862731843 0.89882816 0.824945571 0.846426404 0.939785975 0.840177943 0.847860271 218645705 phytase Buttiauxella agrestis Phosphorus Phytic acid hydrolysis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Buttiauxella; 0.803308086 0.883687077 0.831817042 0.844158095 0.861510018 0.839352302 0.87626567 0.81414738 0.89759255 0.880817297 0.80602731 0.877040397 0.897607279 0.819635865 0.843027415 0.873208871 0.86884284 254506647 endochitinase Vibrio parahaemolyticus 16 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 0.909444792 0.859667737 0.914526962 0.89194394 0.963099848 0.876166747 0.913519919 0.841302205 0.887918622 0.916909464 0.868589735 0.924871243 0.853822695 0.871989402 0.927305247 0.888871907 0.8649006 333938303 ppx Novosphingobium sp. PP1Y Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 1.154325742 1.167856688 1.142792923 1.147596562 1.126933363 1.149560383 1.126480026 1.120906239 1.158032603 1.158340777 1.130168919 1.118636413 1.120321844 1.108730042 1.056915867 1.110365579 1.169255397 1.133233493 355537128 acetylglucosaminidase Agrobacterium tumefaciens CCNWGS0286 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 0.873956273 0.895621934 0.860335835 0.902116697 0.858280217 0.865528571 0.827463911 0.858755673 0.904657887 0.859534894 0.879012701 0.850920228 0.844406664 0.89003704 0.852593474 0.835955085 0.876879483 0.900017723 149120191 soxY Methylobacterium sp. 4-46 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 1.15261972 1.165847295 1.155383562 1.158556864 1.148542666 1.160166334 1.105781611 1.163159301 1.140188561 1.179596185 1.143335914 1.144826981 1.115238436 1.143019708 1.116898117 1.117892343 1.169509685 1.185797614 383458899 ppx Corallococcus coralloides DSM 2259 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Corallococcus;species:Corallococcus coralloides; 1.160621526 1.122814918 1.149991481 1.268511012 1.171244944 1.091859944 1.117188988 1.211560055 1.217514018 1.105531767 1.15181384 1.248234878 1.135434265 1.052117904 1.155230958 1.142237313 1.165986736 1.081300952 66840867 pmoa uncultured bacterium Carbon Cycling Methane Methane oxidation superkingdom:Bacteria; 0.776595628 0.804176823 0.836319633 0.817402318 0.804158977 0.782584059 307944736 nasa Roseibium sp. TrichSKD4 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseibium; 0.860895894 0.849499252 109290262 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.793612127 0.819510751 0.796257334 0.884428662 0.84204747 0.778784171 0.817876192 0.782930131 0.821966191 0.796036635 0.810636457 0.848981304 0.778839099 0.819660013 0.840205058 0.806991827 134080742 mer Aspergillus niger Metal Homeostasis Mercury Detoxification superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 1.070602136 1.034712663 1.04967696 1.081269943 1.006454651 1.031369635 1.005342085 1.033481147 1.051262837 1.035037681 0.998963599 1.033331715 1.018879342 0.999674556 0.990557978 1.008932619 1.088570083 1.0292315 169846830 protease_serine_fungi Coprinopsis cinerea okayama7#130 Carbon Cycling Carbon degradation protein superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 1.046663287 0.954240544 1.003697935 1.057925743 1.020267021 1.016472268 1.041517149 1.048447839 1.047716184 0.985617786 1.031298756 1.043954961 1.021345466 0.972422785 0.989563374 0.991477897 1.046438476 0.951197753 50553192 phospholipase_B_fungi Yarrowia lipolytica virulence degradation NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Dipodascaceae;genus:Yarrowia;species:Yarrowia lipolytica; 0.883541785 0.790442662 0.891402594 0.918018684 0.85271534 0.878714663 0.931097463 0.967511843 0.938567712 0.894652735 0.826396692 0.879544059 0.842490848 0.823251843 0.806721052 0.867468398 0.858225525 56696593 urec Silicibacter pomeroyi DSS-3 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 0.860904708 0.845579066 0.857242561 0.84567724 0.851741816 0.849076353 0.895123549 0.879108978 0.835585868 0.837848971 0.801302082 0.848369888 0.76657537 0.806107204 0.838272128 0.852318098 0.892392782 209401902 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.165874373 1.132996466 1.16054494 1.134916287 1.152322141 1.183284366 1.097808266 1.136013305 1.147817269 1.146071315 1.105124193 1.161923658 1.122025314 1.151261425 1.173495151 1.147456814 1.163324782 1.163234163 154285146 phospholipase_A2_fungi Ajellomyces capsulatus NAm1 Carbon Cycling Carbon degradation Phospholipids superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces capsulatus; 1.37721203 1.345626767 1.333969919 1.343762004 1.333770339 1.317706587 1.312167088 1.340527914 1.313823917 1.294678002 1.323688756 1.362170118 1.282404161 1.253402345 1.286666468 1.318207198 1.326010918 1.299556276 255068644 cysJ Neisseria sicca ATCC 29256 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria sicca; 1.326600425 1.285160094 1.293821809 1.290805366 1.237034671 1.300144779 1.206168991 1.255829796 1.268801548 1.265402903 1.265278933 1.275302536 1.258845879 1.257301174 1.209037971 1.245354554 1.292119118 1.261661091 33597275 napa Bordetella parapertussis 12822 Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella parapertussis; 0.949814777 1.019913841 1.024408575 1.026710103 1.079391035 1.095659747 1.093782817 1.052979553 1.006811946 1.034646196 1.013251429 1.08307236 1.066861008 1.00536293 1.004095008 1.067549843 1.053126428 1.016749227 154246440 nira Xanthobacter autotrophicus Py2 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 0.875186839 0.885392345 0.920915045 0.875973495 0.877038156 0.865268521 0.858028333 0.836779256 0.92217694 0.914539016 0.889126173 0.895341233 0.862678605 0.890574556 0.850879649 0.825149008 0.915554993 0.929982142 363414836 xylc Acidovorax sp. NO-1 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 0.963205002 0.964902239 0.940134399 0.96768954 0.887821942 0.924364741 0.912469711 0.95700818 0.94987682 0.965800414 0.887617063 0.964663283 0.91446902 0.910507961 0.895029116 0.940735219 0.97280298 0.965368986 302416491 cellobiase Verticillium albo-atrum VaMs.102 Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticilium;species:Verticillium albo-atrum; 1.325230823 1.281438277 1.264043278 1.306566167 1.281945716 1.302173044 1.24260081 1.307132244 1.288739876 1.256632139 1.264311866 1.30410636 1.267486705 1.209960811 1.242070511 1.259795282 1.326147699 1.255748669 33284997 chnd Acinetobacter sp. NCIMB9871 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 0.806182277 0.823542779 0.803378766 0.814391738 0.815600914 0.810497232 0.857792352 0.836914199 0.825373396 0.775368733 76056947 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.914523629 0.96110031 0.881171017 0.908474471 0.887143064 0.908697633 0.896826135 0.908313283 0.882000713 0.885074278 0.886821244 0.921210833 0.92177973 0.85111564 0.911580496 0.888902304 0.937416998 0.992229469 320529875 amyA Selenomonas artemidis F0399 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas artemidis; 1.37906918 1.326632873 1.326201256 1.335568073 1.310213755 1.329415759 1.310420055 1.319900002 1.352039093 1.2972952 1.319240474 1.31724775 1.304144636 1.247030249 1.268573227 1.275871331 1.373530711 1.299805188 83941267 dehh109 Sulfitobacter sp. EE-36 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 0.812627764 0.851948219 0.819600641 0.877309478 0.858492695 0.854650928 0.84679215 0.831869968 0.848764654 0.818235031 0.868884554 0.808219141 0.815849796 0.864984197 0.889646927 403415333 badh Fibroporia radiculosa Organic Remediation Aromatics Other aromatics superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Polyporaceae;genus:Fibroporia; 1.286138582 1.283544405 1.287829139 1.26124854 1.274638143 1.296124235 1.285887235 1.270728338 1.258599272 1.284181659 1.272870473 1.286030892 1.241547538 1.232131641 1.233401391 1.266933192 1.290048224 1.281372679 4572432 metc Sphingomonas paucimobilis Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 1.128461815 1.126022864 1.068874816 1.135489297 1.085933025 1.124355725 1.086657129 1.070488731 1.089934127 1.101408522 1.114465603 1.119765324 1.107732882 1.096547184 1.064301355 1.08753556 1.109129957 1.091417002 150026827 mer Sinorhizobium medicae WSM419 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 0.903422136 0.96803753 0.937945529 0.859081344 0.963445803 0.90658809 0.926621681 0.932125032 0.884914631 0.983706094 0.965098421 0.937142005 0.867682364 0.820924637 1.027309011 0.976344895 0.980252416 339502986 tktA Roseobacter litoralis Och 149 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter litoralis; 0.867297419 0.904142909 0.873366763 0.830973095 0.842682463 0.843228249 0.828073577 0.837651597 0.858088483 0.870847136 0.841889813 0.831593577 0.799448428 0.800790365 0.846975369 0.862551711 0.913753012 284390204 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.974101564 0.992028509 0.976639279 0.987304474 0.938692199 0.970770537 0.938757471 0.953968136 0.929911024 0.958443741 0.903812773 0.968969973 0.938771235 0.927993535 0.935220376 0.93101043 0.984101935 0.992102363 320103169 CsoS1_CcmK Isosphaera pallida ATCC 43644 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Isosphaera;species:Isosphaera pallida; 1.057550691 1.067739849 1.037854615 1.090490057 1.074936564 1.06966309 1.042003409 1.036886007 1.057592054 1.013341463 1.014551888 1.055185286 1.048167029 1.02636591 0.984143829 1.012854239 1.07765041 1.051901576 158523516 dsra uncultured bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.187875546 1.137775909 1.169343613 1.195110047 1.154885636 1.140060848 1.150222327 1.192819586 1.183013506 1.162097662 1.116713672 1.177142463 1.134212559 1.091271464 1.083013922 1.148042394 1.162125419 1.149465443 377540759 dsra Escherichia hermannii NBRC 105704 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia hermannii; 0.835532448 0.828800656 0.806950567 0.839368791 0.843012468 0.803712733 0.829881962 0.859653544 0.835567959 0.777566814 0.807623854 0.813956217 0.758612594 0.835402567 229494341 cdh Rhodococcus erythropolis SK121 Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 0.912292592 0.907134391 0.826005924 0.964013854 0.849131185 0.961461724 0.952850465 0.888813365 0.893363065 0.894197529 0.90411085 0.887413237 0.902770349 0.866474126 0.943886814 0.846004035 0.921700039 0.931194145 159899978 pectinase (pectate_lyase) Herpetosiphon aurantiacus DSM 785 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Herpetosiphonales;family:Herpetosiphonaceae;genus:Herpetosiphon;species:Herpetosiphon aurantiacus; 1.326346432 1.334000171 1.290032015 1.306830504 1.288346644 1.33087834 1.278427639 1.303921139 1.288691658 1.293417557 1.288885256 1.286737907 1.279499643 1.261987789 1.283337586 1.284763517 1.343709313 1.309327204 325962201 amyA Arthrobacter phenanthrenivorans Sphe3 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter phenanthrenivorans; 0.939198743 0.900447253 0.942305831 0.98245335 0.880614464 0.928487403 0.876057783 0.957313334 0.944133424 0.917300279 0.927335027 0.931439799 0.93046713 0.885045664 0.901154273 0.892073543 0.949889101 0.935836377 328843317 ara Asticcacaulis biprosthecum C19 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis biprosthecium; 1.100478403 1.098192236 1.106439589 1.129726296 1.107409638 1.114045327 1.106311284 1.133694438 1.109584241 1.079602982 1.10898139 1.098214719 1.081276313 1.045841467 1.051276189 1.043847223 1.110931734 1.107082869 377574404 nrfa Mobilicoccus pelagius NBRC 104925 Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dermatophilaceae;genus:Mobilicoccus;species:Mobilicoccus pelagius; 1.258593945 1.21793842 1.235936015 1.232482937 1.22615643 1.238494641 1.218822412 1.205480507 1.212656214 1.230245328 1.21855032 1.204913783 1.19212908 1.183623904 1.185706184 1.184086379 1.288548394 1.200305967 255342208 pme Flavobacteriaceae bacterium 3519-10 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae; 0.889348164 0.880981541 0.922757092 0.903560407 0.889352503 0.870668015 0.869642915 0.905760562 0.890905608 0.87848418 0.819357826 0.857183187 0.829580646 0.823191345 0.814774582 0.823364719 0.905325023 0.899606092 257336920 FBPase Sinorhizobium meliloti Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium; 0.987640823 0.961567232 0.983224061 1.031210966 0.952664757 0.9989808 0.920465326 0.9171309 0.958602916 0.915750292 0.945856745 0.958789684 0.919786173 0.908185309 0.931335101 0.897894006 0.939627727 0.977140816 116222345 heparinase Candidatus Solibacter usitatus Ellin6076 Carbon Cycling Carbon degradation Heparin superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 1.209823108 1.214461805 1.198313389 1.173347157 1.168584291 1.207340355 1.150418907 1.167021751 1.164418415 1.169722815 1.159217586 1.219162068 1.136546855 1.166905401 1.131894182 1.160184933 1.195009475 1.188168325 357265842 ccmM Crocosphaera watsonii WH 0003 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Crocosphaera;species:Crocosphaera watsonii; 1.222485565 1.224967915 1.180401797 1.233837736 1.245617053 1.237110438 1.179350945 1.205902939 1.225217999 1.21337176 1.176033446 1.199502979 1.193658416 1.172271859 1.176903597 1.196108878 1.253355031 1.230933846 39940908 tannase_Cdeg Magnaporthe grisea 70-15 Carbon Cycling Carbon degradation Tannins superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 0.821245595 0.818642092 0.82524148 0.867780312 0.831824799 0.823662425 0.83152248 0.847844521 0.858959608 0.836687912 0.82552858 0.846033826 0.849572282 0.782997282 0.827101471 121611520 pcpe Verminephrobacter eiseniae EF01-2 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 0.835334011 0.822729637 0.864601886 0.85866131 0.838483169 0.829611099 0.784346435 0.84060824 0.85268633 0.84259069 0.843994064 154175407 codh Campylobacter curvus 525.92 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter curvus; 0.890019018 0.915361862 0.92360682 0.814792516 0.816796268 0.870319036 0.879853539 0.867181361 0.890477243 0.863206352 0.940446838 0.771035154 0.877626044 0.82849967 0.823024715 0.837973591 0.891257563 379763494 amyA Mycobacterium intracellulare MOTT-64 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium intracellulare; 1.330497589 1.353020377 1.328784015 1.314787904 1.342962254 1.363294598 1.299595795 1.330604522 1.265817129 1.317899439 1.325139395 1.300029726 1.300099174 1.326735367 1.31390777 1.315026046 1.354697723 1.330073496 219545192 rubisco Methanosphaerula palustris E1-9c Carbon Cycling Carbon fixation Calvin cycle superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;family:Methanoregulaceae;genus:Methanosphaerula;species:Methanosphaerula palustris; 0.979782038 0.947018692 0.891658152 0.952981123 0.901273166 0.935814426 0.897220987 0.899297789 0.965193417 0.936864163 0.907264603 0.923338917 0.912231084 0.949539348 0.877745877 0.919546533 0.968551173 0.968855268 68349021 nirs Pseudomonas sp. C10-2 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 1.193490007 1.223168026 1.143763428 1.153510969 1.163539809 1.199041227 1.178253887 1.136561689 1.168599932 1.17409812 1.183592819 1.151285572 1.19473736 1.165986076 1.148982968 1.180489679 1.16637623 1.182147642 254383540 amyA Streptomyces sp. Mg1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 1.070270579 1.04036034 0.996046078 1.0305777 0.976206423 1.039395462 0.96373445 1.003218033 1.025964904 1.024413739 0.976255594 0.999486889 0.965354133 0.992282134 0.898203765 0.987325818 1.022756402 1.041948153 345852777 one_ring_23diox Streptomyces zinciresistens K42 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces zinciresistens; 1.107150476 1.082006739 1.017828329 1.099057346 1.017490673 1.070828486 1.040311775 1.04990405 1.091147557 1.057124353 1.03939666 1.053449601 1.031528136 1.029362243 0.989303124 1.024767375 1.088969658 1.091169001 333915906 vana Delftia sp. Cs1-4 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia; 1.073653802 1.060438568 1.058761025 1.054497923 1.012880367 1.045642529 1.010051978 1.026918226 1.011375214 1.053803446 1.044400838 1.034872595 1.028736764 1.040133658 1.006074144 1.043670442 1.053500988 1.060600009 40745321 protease_serine_fungi Aspergillus nidulans FGSC A4 Carbon Cycling Carbon degradation protein superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 0.902932118 0.875116153 0.854739436 0.906317583 0.866265393 0.879507572 0.868062329 0.875627824 0.856709039 0.815493248 0.877341262 0.884849141 0.86199182 0.853268007 0.943371814 0.88589011 0.906533195 0.88287153 118469689 amyA Mycobacterium smegmatis str. MC2 155 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 0.948441766 0.830753974 0.860444537 0.87717352 0.800236261 0.805929111 0.865089745 0.863658852 0.812099666 0.858582874 0.846517672 0.80854439 0.816564707 0.815249298 0.870956371 0.83617153 224579309 rubisco gamma proteobacterium HRh1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 1.175079408 1.165702323 1.151165263 1.215325488 1.195169256 1.207172301 1.197797033 1.170006361 1.181673215 1.166000575 1.145689027 1.181113493 1.165178207 1.155229721 1.208810448 1.157163022 1.163124462 1.168581179 403649308 chnb Mycobacterium vaccae ATCC 25954 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vaccae; 1.416531388 1.391612676 1.385577277 1.431698521 1.379733218 1.404686458 1.371607945 1.407412425 1.369751989 1.357106558 1.368074615 1.398062408 1.365084386 1.365249916 1.369591256 1.395493963 1.371225604 1.359832564 74056686 amyA Thiobacillus denitrificans ATCC 25259 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus;species:Thiobacillus denitrificans; 1.051254372 1.081896151 1.005362188 1.036004147 1.060050926 1.075262854 1.012843612 1.019379855 1.012004342 1.014699552 1.023234358 1.036628561 1.032019724 0.990224848 0.981526106 1.016444981 1.050258011 1.076979337 34017032 mcra uncultured methanogenic archaeon Carbon Cycling Methane Methanogenesis superkingdom:Archaea;phylum:Euryarchaeota; 1.191543316 1.18446955 1.18043329 1.15918451 1.164066819 1.214857073 1.169139875 1.168121165 1.171720556 1.168967903 1.167459414 1.174756467 1.178200751 1.144364847 1.133731328 1.148457169 1.204819602 1.170490519 358241371 cdh Gordonia amarae NBRC 15530 Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia amarae; 0.867228881 0.797869547 0.829852116 0.855517688 0.805333181 0.81145164 0.833894182 0.814709891 118618410 sqr Mycobacterium ulcerans Agy99 Sulfur Sulfide Oxidation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium ulcerans; 0.809553324 0.798009153 83644004 chitinase Hahella chejuensis KCTC 2396 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Hahellaceae;genus:Hahella;species:Hahella chejuensis; 0.771821059 0.804034807 0.760607462 0.843404926 383453559 terc Corallococcus coralloides DSM 2259 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Corallococcus;species:Corallococcus coralloides; 0.909554419 0.957978354 0.846073267 0.937184306 0.857650297 0.894559883 0.835249814 0.875778023 0.902348776 0.813939625 0.877588944 0.853449884 0.899633891 0.833857403 0.890782953 0.975833401 302458936 chitinase Streptomyces himastatinicus ATCC 53653 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces himastatinicus; 1.112434719 1.200278837 1.07662489 1.092234525 1.071011859 1.084255784 1.09130099 1.084115882 1.080017325 1.087581295 1.068541228 1.089800222 1.069892734 1.059048207 1.046841838 1.072927059 1.079611984 1.057326114 108464563 ppx Myxococcus xanthus DK 1622 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus xanthus; 0.835825032 0.804651573 0.880977641 0.831834731 0.854389186 0.825387761 0.868316992 0.823768104 0.824579893 0.83793445 0.821041323 0.8809272 0.81358326 0.796108506 0.801309002 0.801168468 0.848791053 0.862676643 145214436 catechol Mycobacterium gilvum PYR-GCK Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 1.210310608 1.211249051 1.167808027 1.215076059 1.183257508 1.190950919 1.186729903 1.149620494 1.196582049 1.194678836 1.201403671 1.250889143 1.193443302 1.169223655 1.16802717 1.205863603 1.164577991 1.187602224 91204035 mer Candidatus Kuenenia stuttgartiensis Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Candidatus Brocadiales;family:Candidatus Brocadiaceae;genus:Candidatus Kuenenia; 1.162382465 1.153493052 1.13099301 1.149571056 1.109747039 1.164757836 1.123068924 1.150529526 1.163957045 1.134287407 1.103412489 1.125073065 1.099755321 1.098901528 1.100371902 1.087904796 1.155499822 1.148812566 86749031 vana Rhodopseudomonas palustris HaA2 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 0.927979911 0.892429995 0.93420157 0.963776044 0.933006476 0.915496827 0.980275044 0.94351382 0.961260738 0.923340054 0.876500734 0.960463879 0.873359281 0.830231533 0.885371595 0.962979765 0.969324426 0.921406683 150385878 ara Victivallis vadensis ATCC BAA-548 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Lentisphaerae;family:Victivallaceae;genus:Victivallis;species:Victivallis vadensis; 0.97777122 0.897225508 0.940840987 1.003256484 0.965640641 0.962989981 0.976880757 0.985685448 0.960630136 0.934045063 0.916949121 0.950080166 0.928374499 0.877463757 0.89309289 0.926370573 0.964656109 0.937940977 335436959 amyA Halorhabdus tiamatea SARL4B Carbon Cycling Carbon degradation Starch superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halorhabdus;species:Halorhabdus tiamatea; 0.991328956 1.033512638 0.980034376 1.002560712 1.002952218 1.04108793 0.993874879 0.959494564 0.950473361 0.984257165 0.983166245 0.989639662 1.005601062 1.015257653 0.986381993 0.973243374 1.008829601 1.051096809 188020044 ppx Providencia stuartii ATCC 25827 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia stuartii; 0.904339257 0.856633439 0.867834702 0.904529986 0.876823899 0.882537495 0.857540299 0.858520299 0.879462319 0.908279416 0.896126191 0.877770007 0.804637324 0.848460664 0.88435116 0.882516984 0.888997294 37900195 rubisco Synechococcus sp. OH20 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 0.877048061 0.91615779 0.854270367 0.869233033 0.871716867 0.906078771 0.901612922 0.867492231 0.881814979 0.829120527 0.833330959 0.878032283 0.870497611 0.886966909 0.862049844 0.892839793 0.911711128 373549418 mhpb Mycobacterium tusciae JS617 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tusciae; 1.150312596 1.174725319 1.152683804 1.146204674 1.138441382 1.181614022 1.136601989 1.1171125 1.137974628 1.156073827 1.172290736 1.138696276 1.149172243 1.112842034 1.087976679 1.110408331 1.21361842 1.139027692 119404389 ppx Aspergillus clavatus NRRL 1 Phosphorus Polyphosphate degradation NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 1.122225727 1.115890049 1.093275429 1.131578414 1.079839605 1.079080459 1.049409921 1.071576693 1.073727582 1.075974862 1.069374516 1.094075266 1.034542971 1.052703288 1.023130713 1.058060191 1.118802836 1.127358046 296029648 bphc Tsukamurella paurometabola DSM 20162 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Tsukamurellaceae;genus:Tsukamurella;species:Tsukamurella paurometabola; 1.12775005 1.129249989 1.136039862 1.121154283 1.117624452 1.126867365 1.107218806 1.219553956 1.127715936 1.104114195 1.129283074 1.12251977 1.092593041 1.07873727 1.073836477 1.162838385 1.112665908 1.12317345 89068265 ppx Oceanicola granulosus HTCC2516 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola granulosus; 1.173218281 1.115726778 1.090508651 1.140388419 1.107843703 1.146311639 1.08137615 1.088784244 1.127067214 1.104280802 1.081738682 1.115134612 1.087639669 1.085686546 1.078694425 1.098924431 1.15325574 1.105495012 74038350 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.763346492 0.804399313 0.82958848 0.850599385 0.828690735 0.811951886 0.802784058 0.867886578 0.79653231 0.806431717 0.781005561 311229243 mult_ring_12DiOx Frankia sp. EuI1c Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 1.167731935 1.179985393 1.163697571 1.137280196 1.130661118 1.187194633 1.121655691 1.138732427 1.136653997 1.170997616 1.146411789 1.140993112 1.130642079 1.123844355 1.103193437 1.126060774 1.183282855 1.18237274 223896443 acetylglucosaminidase bacterium Ellin514 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobia subdivision 3;genus:Pedosphaera;species:Pedosphaera parvula; 1.049772266 1.005437509 1.055384504 1.042736895 1.049308558 1.048461777 1.055627847 1.022423915 1.028514913 1.02906123 1.003859741 1.025964394 0.987111515 0.971259509 0.973453305 0.99654603 1.060897712 1.00456896 325181983 actin_Stramenopiles Albugo laibachii Nc14 Other Phylogenetic NA superkingdom:Eukaryota;order:Albuginales;family:Albuginaceae;genus:Albugo;species:Albugo laibachii; 0.792296176 0.83345782 0.867336697 0.824908925 0.840219274 0.787631703 0.797106625 0.818624547 0.811648486 0.807638258 0.822769324 364505647 hzsa Candidatus Brocadia fulgida Nitrogen Anammox NA superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Candidatus Brocadiales;family:Candidatus Brocadiaceae;genus:Candidatus Brocadia; 1.046030104 1.032279047 0.954639547 1.009777164 0.963764212 0.970065304 1.001159009 1.026845028 1.017604434 0.983175174 0.958374122 1.021939798 0.911827321 0.947255809 0.903700079 0.91453994 1.015079855 1.071068804 319945489 ara Lautropia mirabilis ATCC 51599 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Lautropia;species:Lautropia mirabilis; 0.842138023 0.818812231 0.872657204 0.859736716 0.860364714 0.856452858 0.87552399 0.851534954 0.865283117 0.816097036 0.85173745 0.840471393 0.847586897 0.864784999 119497855 invertase_fungi Neosartorya fischeri NRRL 181 Carbon Cycling Carbon degradation sucrose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 0.84836564 0.891180594 0.901729091 0.871627886 0.806513603 0.862885313 0.84093818 0.828586703 0.853805802 0.846119301 0.81572159 0.792513059 91774903 mauab Methylobacillus flagellatus KT Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Methylophilales;family:Methylophilaceae;genus:Methylobacillus;species:Methylobacillus flagellatus; 0.924977018 0.895696982 56694506 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.296726211 1.315580779 1.26705081 1.291441755 1.237529434 1.283155198 1.215996221 1.246085086 1.260521441 1.24420075 1.249557695 1.238873686 1.221328795 1.253173624 1.189742852 1.241080161 1.27509007 1.245670606 372269463 ppx Marinobacterium stanieri S30 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacterium;species:Marinobacterium stanieri; 1.112111084 1.077333941 1.093300707 1.145906672 1.098668944 1.11764271 1.106403513 1.126679073 1.124961158 1.089998634 1.103089549 1.115097302 1.074007913 1.043394938 1.022367744 1.081095097 1.1322681 1.080891573 398055627 bphF1 Brevibacillus sp. CF112 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Brevibacillus; 1.104525533 1.12134086 1.220309209 1.169099468 1.163498169 1.1511696 1.190662722 1.168077721 1.139552866 1.161557276 1.222103895 1.203084321 1.15364496 1.117435479 1.136021638 1.159967291 1.101618103 1.100362441 161384634 poba Phaeobacter gallaeciensis 2.10 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 1.342970474 1.324169382 1.308127353 1.297285295 1.289604218 1.321105808 1.295337674 1.281497972 1.298954912 1.288602627 1.29897137 1.283604225 1.25498879 1.277105298 1.253535549 1.264805605 1.314642817 1.325421822 403704926 B_lactamase_A Rhizobium sp. Pop5 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 1.281724655 1.211957913 1.232361945 1.268852144 1.197138463 1.225931045 1.208004929 1.240633697 1.232286619 1.254136088 1.204248022 1.250237268 1.201370753 1.190824452 1.186442536 1.211947444 1.295628368 1.251893039 255950840 exopolygalacturonase_fungi Penicillium chrysogenum Wisconsin 54-1255 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 0.913586757 0.99286997 0.912564372 0.881959655 0.938752368 0.941928153 0.903883288 0.847554253 0.8701753 0.918515576 0.879845076 0.880395663 0.886763556 0.823702442 0.858520351 0.866988624 0.909400234 0.941405107 221738110 rgh Agrobacterium vitis S4 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium vitis; 0.936382063 0.911461141 0.957810966 0.940346659 0.97467361 0.924921253 0.982600129 0.975791301 0.942121233 0.975205523 0.947402419 0.945125252 0.890983939 0.961706451 0.824384766 0.924100968 0.925912799 383777473 badh Actinoplanes missouriensis 431 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes;species:Actinoplanes missouriensis; 1.044493064 1.045512891 1.010946222 1.053234401 0.99434067 1.030537549 1.030003232 1.053157725 1.025307453 1.029109527 0.998028318 1.030029425 0.969730724 0.990728388 0.949084459 1.005187636 1.039140274 1.030510243 126952478 dsrB uncultured bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.863005409 0.818809103 0.873694572 0.879957091 0.804615224 0.825620289 0.840159516 0.846042804 0.874115583 0.854235345 262263151 pcpe Rhodococcus sp. PN1 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 0.833393037 0.864471623 0.826925691 0.882656555 0.808973858 0.823153812 0.80975012 0.852470504 0.87406325 302406735 rgh Verticillium albo-atrum VaMs.102 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticillium;species:Verticillium alfalfae; 0.838642011 0.821971615 0.833190644 0.872548281 0.86471863 0.8179947 0.841754977 0.856916913 0.823237187 0.881216369 0.837473191 0.816745096 0.832302918 0.872950907 383333215 vgb Mycobacterium phlei RIVM601174 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium phlei; 0.86682833 0.844272301 0.844516027 0.86422372 0.843757807 0.870317484 0.853652087 0.840076583 0.870957595 0.901138277 0.848354874 0.853501702 0.797795544 0.870838386 0.837589563 0.881202618 365422841 ppk Bradyrhizobium sp. STM 3843 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.829342655 0.869954523 0.837079497 0.892866397 0.830911004 0.817043101 0.825437433 0.831948987 0.818622507 0.804493471 0.838980695 0.802290369 0.827224559 0.840054081 0.87033574 0.85105532 359289625 mdlc Thermus sp. CCB_US3_UF1 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus; 0.927175649 0.90677675 0.910537713 0.923216424 0.922103968 0.909277272 0.872519378 0.895928126 0.897373972 0.893479917 0.905240661 0.926222025 0.902776059 0.892695078 0.882205714 0.879038143 0.943426367 0.922061779 149792878 pula Thermosipho melanesiensis BI429 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Thermosipho;species:Thermosipho melanesiensis; 0.942343647 0.951070756 0.946349587 0.961625093 0.9646316 0.928032394 0.968971014 0.950382258 0.953230264 0.946487036 0.922559233 0.943570882 0.914332453 0.920044398 0.896853331 0.881657018 0.937147001 0.951690034 38427012 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.319126516 1.259229131 1.277721618 1.292437227 1.308988053 1.348975405 1.303893156 1.248096496 1.243144296 1.285578905 1.31276299 1.256206532 1.272754423 1.283699943 1.20936395 1.268884929 1.30429109 1.281787965 357408793 narg Streptomyces cattleya NRRL 8057 = DSM 46488 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces cattleya; 1.07794394 1.004039643 0.989957843 1.034606164 1.006018241 1.048361377 0.998845251 1.039798353 1.044946743 1.007816335 1.000724232 1.000881431 1.001593495 0.991045367 0.974016358 0.988650324 1.027340226 0.987412916 302882339 phospholipase_A2_fungi Nectria haematococca mpVI 77-13-4 Carbon Cycling Carbon degradation Phospholipids superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Nectria;species:Nectria haematococca; 1.087412687 1.077879065 1.06466295 1.103441836 1.080261388 1.101183067 1.052351798 1.011824547 1.062359355 1.046422126 1.050185509 1.043122033 1.073898553 1.013819012 0.983118564 1.032092457 1.119448093 1.068536685 290959605 vgb Streptomyces scabiei 87.22 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces scabiei; 0.981525007 1.044923065 0.957718379 1.015286827 0.957401065 0.964182757 0.9679544 1.016102839 1.007563354 0.995979894 0.913688791 0.981415711 0.899946496 0.949903536 0.923791884 0.941210028 1.013394741 1.035782769 114800416 mer Hyphomonas neptunium ATCC 15444 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Hyphomonas;species:Hyphomonas neptunium; 0.946951461 0.941080362 0.940950771 0.976320272 0.940633138 0.948005547 0.942526291 0.937431084 0.957674424 0.908389663 0.910577286 0.944647013 0.89688879 0.881786249 0.888625192 0.883836602 0.96724888 0.93364583 88790371 PRK Nitrococcus mobilis Nb-231 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Nitrococcus;species:Nitrococcus mobilis; 0.969023862 0.97834083 0.959079809 1.012161906 0.991404747 0.965534009 0.986204083 0.978565166 0.963445034 0.957252674 0.94186546 1.019277654 0.979755898 0.952520965 0.954698891 0.979984952 0.983377948 0.944996563 387888191 cysJ Escherichia blattae DSM 4481 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Shimwellia;species:Shimwellia blattae; 0.990103122 0.962138754 0.984112302 0.919688322 0.913624219 1.032557088 0.895882311 0.893382297 0.943070176 1.01911562 0.902909048 0.924434119 0.968423936 0.99641326 0.947829872 0.914779814 0.93661241 1.000942752 218680146 endoglucanase Rhizobium etli CIAT 894 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 0.926407856 0.89736569 0.907958941 0.816201822 0.875973337 0.87936171 0.901777966 0.884260608 0.821449303 0.849549889 0.854876186 0.918288686 0.87047961 334343526 tfth Sphingobium chlorophenolicum L-1 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium;species:Sphingobium chlorophenolicum; 1.039135985 1.046456994 1.032878247 1.050697203 1.026815107 1.050533012 1.017809995 1.040138552 1.030324412 1.027813111 1.00784395 1.031246353 1.022966826 1.004746075 0.979752019 0.983555226 1.041663392 1.063724498 377539344 tehb Escherichia hermannii NBRC 105704 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia hermannii; 1.095896036 1.040942643 1.048056733 1.116456982 1.069321293 1.057676024 1.090285146 1.095631161 1.104581719 1.070385705 1.042540468 1.081973398 1.04903125 1.072400586 1.057756695 1.053038723 1.081035031 1.057903132 209401972 tutfdg Sulfate-reducing bacterium PRTOL1 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria; 1.106515386 1.112236384 1.095968827 1.092800442 1.091474876 1.132752278 1.077451049 1.113277134 1.103073045 1.110680642 1.095493903 1.097887478 1.068826432 1.091725887 1.068670845 1.089355001 1.087803581 1.133466291 295675251 mult_ring_12DiOx Burkholderia sp. CCGE1002 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 1.073950459 0.978424931 0.960493137 0.989926038 0.999572182 0.995610322 1.042088699 1.034506241 1.011687776 0.967452044 0.968575695 0.9948065 0.980346051 0.939034783 0.968756932 0.918942072 1.020929223 0.943578979 320137219 bphF1 Selenomonas artemidis F0399 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas artemidis; 0.903190667 0.868245148 0.892324098 0.937195577 0.906797852 0.875679475 0.912345153 0.887319469 0.898395845 0.859997827 0.857653873 0.902103674 0.859988576 0.859310758 0.852932553 0.913123896 0.827271706 326415449 one_ring_23diox Polymorphum gilvum SL003B-26A1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;species:Polymorphum gilvum; 0.909403022 0.917163649 0.845162044 0.926458824 0.826778678 0.875446935 0.827953812 0.865641485 0.862230744 0.869609059 0.883197003 0.880027284 0.926530926 0.926406347 8515799 one_ring_23diox uncultured bacterium Organic Remediation Aromatics Other aromatics superkingdom:Bacteria; 0.920667515 0.938395666 0.850699511 0.965198166 0.904925916 0.857727292 0.874828638 0.818576933 0.870079126 0.892968523 0.842694177 0.925164951 0.837147764 0.872353322 0.902079374 0.937590227 0.945366899 187928869 metc Ralstonia pickettii 12J Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 0.922785757 0.907949111 0.944239442 0.938721898 0.932307668 0.936127879 0.887332069 0.902144753 0.912102477 0.884622424 0.835228067 0.880987467 0.836960667 0.867000776 0.832923038 0.844455963 0.931585368 0.985201245 269218198 fthfs Actinomyces sp. oral taxon 848 str. F0332 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 848; 0.973231619 0.993816099 0.981572632 0.970383067 0.964312237 0.983197634 0.951528247 0.95523895 0.968225001 0.992041328 0.941750527 0.971142903 0.932280405 0.954131393 0.861392549 0.959021091 0.979231711 0.979470408 296263880 GAPDH_Calvin Roseomonas cervicalis ATCC 49957 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Roseomonas;species:Roseomonas cervicalis; 1.09137835 1.100567277 1.036998262 1.075325908 1.069602912 1.094990455 1.042266009 1.000121428 1.047632999 1.085679252 1.069359997 1.063561863 1.041383816 1.07108552 1.034316582 1.051108057 1.057699371 1.109315507 229589033 poba Pseudomonas fluorescens SBW25 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 1.087116627 1.040137314 1.013339295 1.069759711 1.074040354 1.090368514 1.02788472 1.03143607 1.041826381 1.078307272 1.108456539 1.019698353 1.022961141 1.032848891 0.992247658 1.057573414 1.097405941 1.066773743 119191930 glx Coccidioides immitis RS Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;genus:Coccidioides;species:Coccidioides immitis; 0.85665292 0.819420113 0.895113188 0.792194673 0.83043085 0.862847452 0.826010216 0.797699841 0.863940891 0.862756489 261193797 endochitinase Ajellomyces dermatitidis SLH14081 Carbon Cycling Carbon degradation Chitin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces dermatitidis; 0.793083436 0.889000794 0.817300423 0.879759816 0.832215732 0.823372584 0.841841749 0.814154075 0.79756105 0.8633988 0.849993907 0.863055851 0.810887365 0.830409772 229611208 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.833628535 0.792549821 0.839515113 0.878576156 0.865030633 0.790337799 0.896992375 0.891060162 0.83892342 0.807386864 0.819247811 0.868223335 0.837526431 380732338 chitinase Corallococcus coralloides DSM 2259 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Corallococcus;species:Corallococcus coralloides; 1.126723166 1.149882547 1.120814677 1.131172108 1.138288067 1.180229368 1.124945877 1.126386478 1.12391745 1.109838278 1.133942859 1.126155989 1.058975048 1.078412631 1.035108507 1.081960666 1.082035096 1.131853823 296170382 tfda Mycobacterium parascrofulaceum ATCC BAA-614 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium parascrofulaceum; 0.853285897 0.859901407 0.912543295 0.879418142 0.890050991 0.912452741 0.957701907 0.909977366 0.88064471 0.909849233 0.896838526 0.878395674 0.82246376 0.815486109 0.86302246 0.85413022 0.898319603 0.921952672 88861520 tehb Pseudoalteromonas tunicata D2 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas tunicata; 0.89783334 0.82955394 0.830765008 0.845348751 0.814083959 0.866364144 0.822643442 0.838987223 0.79341737 0.837892858 0.828851166 0.818025027 0.866642757 0.881540743 228558172 amyA Citrobacter youngae ATCC 29220 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter youngae; 0.857245458 0.80739497 78184154 amyA Synechococcus sp. CC9902 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 0.984813591 1.021439501 1.02227561 1.025718529 0.993560068 1.01301107 0.99397922 1.015089704 1.003544582 0.995163377 0.992860219 1.001341929 1.000930174 0.972285748 0.989740348 0.998684171 1.015523021 0.973095043 219921387 mer Laminaria digitata Metal Homeostasis Mercury Detoxification superkingdom:Eukaryota;phylum:Phaeophyceae;order:Laminariales;family:Laminariaceae;genus:Laminaria; 1.063053448 1.04195282 1.065453862 1.053886337 0.969314369 1.053209078 1.011321817 1.048165462 1.037678752 1.049982509 1.010228895 1.022831241 0.971093738 1.045059115 1.125551611 0.982034757 1.061887742 1.008775753 319945328 ppx Lautropia mirabilis ATCC 51599 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Lautropia;species:Lautropia mirabilis; 1.272609809 1.24310848 1.24634851 1.279899162 1.217540887 1.252799526 1.222871905 1.247662043 1.252317388 1.230491965 1.219842086 1.269680388 1.211101541 1.199512225 1.205609462 1.226315255 1.25915964 1.246538308 260426115 nirb Citreicella sp. SE45 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Citreicella; 0.844620888 0.799907792 238784693 amyA Yersinia bercovieri ATCC 43970 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia bercovieri; 0.892436613 0.872290703 0.896222363 0.894618689 0.856807659 0.888489963 0.877331422 0.915624285 0.92717105 0.909965277 0.877981917 0.88044193 0.779837131 0.857069338 0.79651507 0.811821641 0.840259644 0.856204712 87310833 Sir Blastopirellula marina DSM 3645 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Blastopirellula;species:Blastopirellula marina; 1.200306637 1.210452881 1.196063207 1.201016702 1.174759604 1.200069479 1.16210915 1.168778053 1.169665937 1.178208129 1.164295891 1.167868735 1.159274102 1.145935166 1.147049263 1.180830927 1.207201849 1.191920291 338167207 cysI Cupriavidus necator N-1 Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 1.128930981 1.046687165 0.988153978 1.081755913 1.021232719 1.010786159 1.029401448 1.052042572 1.050910944 0.979860288 0.954399268 1.043253376 0.962187631 0.957124377 0.87982544 0.955079604 1.080091214 1.070102898 225792037 ara Acidobacterium capsulatum ATCC 51196 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteria;order:Acidobacteriales;family:Acidobacteriaceae;genus:Acidobacterium;species:Acidobacterium capsulatum; 1.126126339 1.068764461 1.052284613 1.029646471 1.003829585 1.057625617 0.990511962 1.029834845 1.04884515 1.044818927 1.030303394 1.067645394 0.986509819 1.039608465 0.990383867 1.01640628 1.048840885 1.07649686 168196171 tktA Methylobacterium sp. 4-46 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 1.097843891 1.074308372 1.102807413 1.107880989 1.123102042 1.102265694 1.144583561 1.117576979 1.118831529 1.108768429 1.112347293 1.129779489 1.102465324 1.060022249 1.091699026 1.084528699 1.136969691 1.082586929 298263912 pmoa uncultured bacterium Carbon Cycling Methane Methane oxidation superkingdom:Bacteria; 0.82141565 0.816364368 150407360 nitrate_reductase Ajellomyces capsulatus NAm1 Nitrogen N Assimilation NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces capsulatus; 1.018074575 0.991170881 1.017782591 1.033798277 0.982875976 1.008760412 0.985854496 1.048687748 1.032195205 0.981633506 0.990914276 0.987916228 0.9923499 0.957711639 1.064869315 1.006658932 1.014921158 1.008463252 403199218 bphc Gordonia rubripertincta NBRC 101908 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia rubripertincta; 1.12551591 1.121023534 1.143162979 1.116978418 1.077537913 1.130315782 1.100526584 1.102618578 1.109554345 1.145540689 1.13970675 1.142531667 1.099799149 1.088270751 1.084078338 1.085783888 1.128543544 1.126854284 295977755 FBP_aldolase Gluconacetobacter hansenii ATCC 23769 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter hansenii; 0.886659941 0.795546611 0.938318119 0.940330195 0.865918299 0.967496859 0.851426422 0.895068877 0.9122366 0.944192857 0.852848858 0.910307586 0.941344022 0.87780451 0.875771214 0.950788135 0.95790015 0.871352899 292655857 amyA Haloferax volcanii DS2 Carbon Cycling Carbon degradation Starch superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloferax;species:Haloferax volcanii; 1.394160385 1.370823617 1.361530742 1.369718927 1.350725793 1.399546021 1.352951819 1.364161316 1.35668489 1.350451821 1.349442216 1.376073842 1.346879504 1.327094326 1.35069444 1.370343373 1.384748162 1.356899444 88779000 xyla Reinekea sp. MED297 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Reinekea;species:Reinekea blandensis; 0.816851718 0.859452236 0.846603669 0.899540173 0.893742426 0.814368036 0.925072549 0.869611127 0.903224112 0.881242329 0.824132551 0.910719591 0.826142609 0.863192287 0.850101577 0.864305984 170027473 napa uncultured bacterium Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria; 0.881501205 0.851718838 0.813849461 0.827972885 0.802931543 0.782639301 0.833525327 0.920368668 0.850744204 0.824499516 0.780439321 0.863136175 270290267 fthfs Pediococcus acidilactici 7_4 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Pediococcus;species:Pediococcus acidilactici; 0.940016454 0.859425395 0.933549884 0.915806088 0.973841773 0.822587441 0.819165276 1.024086212 0.969123798 0.84394068 0.854140932 1.003799281 0.923150411 0.846058706 0.911786553 0.914329486 0.91855091 0.919982127 227467104 tktA Roseovarius nubinhibens ISM Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius;species:Roseovarius nubinhibens; 1.115794611 1.123201215 1.09187164 1.12371388 1.067623071 1.082971002 1.073668007 1.090345778 1.091450727 1.070336479 1.036827752 1.092773398 1.002467746 1.029023872 0.965018523 1.037511934 1.11797978 1.130567991 126470052 bphd Rhodococcus rhodochrous Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 0.826684913 1.080898623 0.962845372 0.821369876 0.813882916 0.815219262 0.852563216 0.823321456 0.872555455 359733662 tfth Rhodococcus pyridinivorans AK37 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus pyridinivorans; 0.823049968 0.807497459 0.776577578 0.845383477 312197008 cysJ Frankia sp. EuI1c Sulfur Reduction NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 0.947039382 0.953833544 0.918597828 0.91155695 0.871292354 0.938113281 0.90227174 0.908259183 0.934810836 0.93655996 0.870053297 0.881191583 0.886033168 0.879245997 0.818632103 0.889397689 0.914171898 0.947695172 257076073 fthfs Ferroplasma acidarmanus fer1 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Archaea;phylum:Euryarchaeota;class:Thermoplasmata;order:Thermoplasmatales;family:Ferroplasmaceae;genus:Ferroplasma;species:Ferroplasma acidarmanus; 1.053986898 1.052760148 1.060593821 1.100870314 1.067803552 1.075887424 1.115762868 1.085586659 1.055518332 1.117892341 1.130596822 1.085920841 1.105383572 1.0470658 1.025525552 1.069925497 1.057245452 1.085281452 159466070 mg_chelatase Chlamydomonas reinhardtii Secondary metabolism Pigments Chlorophyll superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Chlorophyceae;order:Chlamydomonadales;family:Chlamydomonadaceae;genus:Chlamydomonas; 1.469733593 1.412135077 1.406747461 1.4272466 1.405992005 1.428137155 1.40001171 1.395213348 1.43036362 1.371428842 1.396482509 1.391258039 1.41256359 1.363943139 1.377914249 1.409885363 1.452189257 1.362797404 71383864 nasa uncultured bacterium Nitrogen Assimilatory N reduction NA superkingdom:Bacteria; 1.060978155 1.050555297 1.051784679 1.027815333 1.127317133 1.032458775 1.036207418 1.044831339 1.024030835 1.032903602 1.021201846 1.013078857 1.029763575 0.990790087 0.973073641 0.988145226 1.04800311 1.055141398 119898828 proO Azoarcus sp. BH72 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 0.81676139 0.830101443 0.872997904 0.845147775 0.821854793 0.874860301 0.854264705 0.81182591 0.917571854 0.916042409 0.993191868 0.890548811 0.925586192 0.863613242 0.856868065 0.954699266 0.8527449 0.903200096 288912732 endoglucanase Azospirillum sp. B510 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum lipoferum; 1.295193374 1.290161344 1.299619366 1.273933808 1.268969059 1.338819823 1.234250574 1.231570948 1.245706321 1.235916459 1.238685546 1.237278001 1.225986455 1.21347634 1.193866235 1.231627733 1.31450029 1.277954434 345014849 ara Streptomyces violaceusniger Tu 4113 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces violaceusniger; 0.981257368 0.984311691 0.994604121 0.985515929 0.933572008 0.953672817 0.935542546 0.972048429 1.008008118 0.952812727 0.934564885 1.012115601 0.90591767 0.911441667 0.92427484 0.928284962 0.967092334 0.971639392 383791512 amyA Spirochaeta africana DSM 8902 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Spirochaeta;species:Spirochaeta africana; 1.178716819 1.165405259 1.141421059 1.191382574 1.169351391 1.176181682 1.165424818 1.197148668 1.174117596 1.16008759 1.154210492 1.179335509 1.140964696 1.100127759 1.105308943 1.1460257 1.193980457 1.12740266 359738799 poba Saccharomonospora azurea SZMC 14600 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora azurea; 1.29122407 1.23488157 1.269272426 1.237904569 1.21041409 1.15260578 1.116836611 1.184244643 1.250732807 1.226190632 1.236603837 1.254788048 1.208889644 1.193845347 1.178513209 1.159612524 1.270464734 1.225837307 76164999 amyA Chloroflexus aurantiacus J-10-fl Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aurantiacus; 1.033048574 1.031008622 1.029404044 1.044361424 1.008418928 1.029718338 0.999333554 1.047930848 1.028767634 1.008892851 0.994551966 1.033419049 0.983279028 0.970252013 0.997791457 1.017047915 1.039049667 1.046806293 217400191 amyA Bifidobacterium gallicum DSM 20093 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium gallicum; 1.056665748 1.07276168 1.026554641 1.03071371 1.031760321 1.024855592 1.022031021 1.048495923 1.038583915 1.071004236 1.024648408 1.069790396 1.024835802 1.054138381 1.037463705 1.024096305 1.046395912 1.061031773 239905290 nrfa Desulfovibrio magneticus RS-1 Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio magneticus; 1.143810198 1.088125838 1.094184066 1.126263771 1.110997906 1.111538042 1.093461503 1.116033088 1.095721903 1.088480569 1.092963392 1.148072358 1.065374929 1.055193631 1.041834083 1.080648385 1.123390329 1.085690116 1395175 bphc Pseudomonas sp. DJ-12 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria; 0.953447107 0.962177234 0.964523703 0.922625946 0.929270148 0.944155425 0.892495578 0.910229467 0.930344934 0.928519951 0.930961073 0.950128999 0.922304644 0.939111775 0.968295697 0.853561124 0.939500084 0.964015463 74038378 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.878725976 0.884325562 0.85735049 0.890695515 0.840257648 0.875326128 0.800536416 0.809218484 0.841732132 0.828713103 0.817927114 0.834228063 0.801445227 0.885015335 0.890486164 157912458 pgk Dinoroseobacter shibae DFL 12 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 0.931448582 0.905718253 0.876149156 0.885610383 0.874615318 0.923185662 0.895455 0.909104922 0.92977496 0.914845905 0.860751133 0.890154033 0.844607412 0.90357981 0.830665938 0.866982908 0.89460893 0.909560173 47572214 arsc Rubrivivax gelatinosus PM1 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 1.095188433 1.062391692 1.032006381 1.092365927 1.038754004 1.117009092 1.040002305 1.050038025 1.077034642 1.03581622 1.046787958 1.075688613 1.048135043 0.98205043 1.028275035 1.049983575 1.101551346 1.056863852 388243314 amyA Haloferax mediterranei ATCC 33500 Carbon Cycling Carbon degradation Starch superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloferax;species:Haloferax mediterranei; 0.965839862 0.961002162 0.945482159 0.964859625 0.917404594 0.97964766 0.872541017 0.924539377 0.958485814 1.002351397 0.897509795 0.921555916 0.939844515 0.949815356 1.026360356 0.936130519 0.98597136 0.980015019 365893891 arsc Bradyrhizobium sp. STM 3843 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.875132314 0.867132585 0.90254827 0.938717053 0.912562606 0.880694792 0.916696548 0.912486894 0.898497789 0.902465313 0.884122019 0.906526658 0.844324223 0.807811639 0.815363088 0.888535184 0.844074521 94471099 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.182087914 1.147742138 1.171471302 1.198804044 1.168043032 1.230497748 1.179602189 1.18709653 1.178830398 1.181747116 1.183017057 1.187865316 1.15258105 1.136300762 1.134610666 1.139842203 1.191136435 1.170354239 170700678 linb Burkholderia ambifaria IOP40-10 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ambifaria; 0.831518777 0.873827278 0.805349214 0.826153343 0.804571604 0.810158324 0.798507348 0.816012393 0.914792392 0.874874238 0.820767225 0.775425293 0.860594658 3760223 pcpA Sphingobium chlorophenolicum Organic Remediation superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium; 1.31850147 1.293692441 1.283301288 1.278729877 1.260239451 1.320904249 1.262230161 1.281767717 1.275488535 1.276229422 1.27008487 1.284226448 1.263435157 1.268367782 1.232898165 1.305823715 1.302290551 1.2777808 163736117 soxY Phaeobacter gallaeciensis BS107 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 0.814287364 0.786498971 0.826767167 0.798876157 0.812080874 323281987 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.837051087 0.825693348 0.842056088 0.835664293 0.807625145 0.807539765 0.853163177 0.844668975 0.845641003 0.826413467 295894785 nira Mycobacterium parascrofulaceum ATCC BAA-614 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium parascrofulaceum; 1.291999885 1.262348613 1.233409011 1.270139149 1.24456191 1.275705798 1.249062384 1.23809894 1.244107516 1.222815435 1.259787573 1.272922546 1.246998533 1.222068236 1.231883011 1.256027398 1.270842558 1.238209303 409439029 catb Rhizobium mesoamericanum STM3625 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium mesoamericanum; 0.913084124 0.871976017 0.919800276 0.932436641 0.897000704 0.877965321 0.887599518 0.908081485 0.934165339 0.89569942 0.933507839 0.860172258 0.86072929 0.862959798 0.83243759 0.850079969 0.898011663 0.897214626 356659324 one_ring_23diox Rhodococcus opacus PD630 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus opacus; 0.901828009 0.956238864 0.871396197 0.9060132 0.846595993 0.866810347 0.85496472 0.901954604 0.908549771 0.91563237 0.828189653 0.897950628 0.811224784 0.930403 0.980660039 381361628 fccab Bradyrhizobium sp. S23321 Sulfur Sulfide Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.85627782 0.907223079 0.886293067 0.930666467 0.886889999 0.962544423 0.852731708 0.877075952 0.878749782 0.887731817 0.911197562 0.894094015 0.840553639 0.825556522 0.872537753 0.844589515 0.897359924 0.904628511 258650523 atzb Nakamurella multipartita DSM 44233 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nakamurellaceae;genus:Nakamurella;species:Nakamurella multipartita; 1.404072845 1.377513243 1.392764022 1.388671323 1.376984269 1.400036211 1.381272407 1.400789805 1.352283767 1.34433979 1.402340477 1.41130387 1.346019293 1.333600644 1.32824106 1.364570657 1.385511922 1.345754098 372267730 chitinase Alteromonas sp. S89 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Microbulbifer;species:Microbulbifer agarilyticus; 0.837786822 0.857345837 319413995 phenol_oxidase uncultured bacterium Carbon Cycling Carbon degradation Lignin superkingdom:Bacteria; 0.956933485 0.828256408 0.945756795 0.966892248 0.905071696 0.989042932 0.91655918 0.899336127 0.899789745 0.891330364 0.904844765 0.895835409 0.890612482 0.917487802 0.854798152 0.884970449 0.912248598 0.85325526 88814640 arsc marine actinobacterium PHSC20C1 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria; 0.802535231 0.800897683 0.808907712 0.809512784 0.77763455 110632060 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.861347956 0.875105323 0.919167815 0.877348957 0.933001506 0.925686778 0.900446535 0.884659092 0.893516772 0.913347841 0.873441628 0.862880326 0.842429924 0.867370919 0.847347405 0.853969623 0.920221824 0.852216545 260651277 ara Streptomyces scabiei 87.22 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces scabiei; 0.943516714 1.201601648 0.993738935 1.099891732 0.996644361 1.027195369 0.947189902 0.970684765 1.014143681 1.02690927 0.993142473 1.042445443 1.00282843 0.993037106 0.944309561 1.022427061 1.006360495 1.016096824 260433862 GAPDH_Calvin Silicibacter lacuscaerulensis ITI-1157 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria lacuscaerulensis; 0.856976087 0.880474662 0.870846154 0.809959726 0.847447056 0.862344344 0.842494271 0.821107911 0.845529693 373548083 nitrilase Mycobacterium tusciae JS617 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tusciae; 0.801961257 0.784740271 0.816524437 0.909934403 0.780864368 0.765569966 0.82394516 311278630 ccmL Enterobacter cloacae SCF1 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter lignolyticus; 0.923435176 0.915024276 0.86973765 0.910731449 0.872155458 0.888019885 0.84626696 0.851198721 0.882357204 0.878683841 0.833552977 0.853362239 0.860293846 0.868381982 0.816697542 0.880285315 0.923476383 0.943512028 23429032 b_lactamase Aeromonas schubertii Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas; 0.886531574 0.876863233 0.851796282 0.893402284 0.875053924 0.821397065 0.808864568 0.855485875 0.852161713 0.861989501 0.823509935 0.854429806 288349213 limeh Frankia sp. EUN1f Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 0.850633347 0.906795344 0.844914271 0.886381658 0.852304391 0.856143588 0.891774932 0.895701907 0.869348676 0.876469553 0.837984269 0.906682022 0.826916625 0.827011107 0.813794392 0.900743042 0.889756391 375144118 chitinase Niastella koreensis GR20-10 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;genus:Niastella;species:Niastella koreensis; 0.962081682 0.966240903 0.930778593 0.954329785 0.94525934 1.005588526 0.925669442 1.045273105 0.964091029 0.984963888 0.949029788 0.950737708 1.002245344 1.001567876 0.909854354 0.97510385 0.959590832 0.952768534 402842215 pcag Klebsiella sp. OBRC7 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella; 1.097342141 1.087413022 1.083960598 1.099914993 1.10516268 1.120774843 1.079546644 1.066717134 1.061995972 1.078533866 1.082893912 1.075345285 1.071009173 1.040000345 1.12769082 1.05115054 1.09955359 1.072886522 1359486 xylanase Ascochyta pisi Carbon Cycling Carbon degradation Hemicellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Didymellaceae;genus:Didymella; 0.857536948 0.862750071 0.876915458 0.88097078 0.842842045 0.828890954 0.850563568 0.869170998 0.828591174 0.806793602 0.793912048 0.853328753 0.86980429 0.854217771 0.854971975 299060366 poba Erwinia billingiae Eb661 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia billingiae; 0.824042695 0.782928905 0.785208552 0.832546133 334133472 phytase Paenibacillus sp. HGF7 Phosphorus Phytic acid hydrolysis NA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 0.852429626 0.87283759 0.886536537 0.826054116 0.947593944 0.852035746 0.82003894 0.850742758 0.857027721 0.960390736 0.870812739 0.860491638 0.860633371 116070689 Sir Synechococcus sp. BL107 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 0.85180763 0.805767763 0.852806523 0.831461687 0.824918373 0.904395552 0.865331965 0.847521671 0.80580563 0.853235353 0.832196023 0.817095073 0.789860542 0.929497283 0.890751328 116696225 cmci Ralstonia eutropha H16 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 0.898270594 0.944810906 0.891389073 0.916926784 0.90200584 0.881916224 0.855507802 0.862686427 0.904757467 0.878995197 0.893622807 0.864908628 0.914502384 0.837274346 0.83964142 0.886162971 0.918425585 0.907230853 344319237 badh Streptomyces sp. SirexAA-E Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 0.892670368 0.917231298 0.870339715 0.905300389 0.883100507 0.906550714 0.858059204 0.913368714 0.869952472 0.928724277 0.85066901 0.914551501 0.869014645 0.856501437 0.829734377 0.89530528 0.897271944 0.901007873 50952845 mnp Trametes versicolor Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Trametes; 1.039455217 1.00807568 0.96987346 1.015739813 0.988873358 1.029854573 0.993825609 0.989218319 1.006263047 0.995064244 0.99646664 0.986669913 0.96881261 1.009000321 0.934074306 0.968550246 1.010016639 1.022973461 329847207 alkk Asticcacaulis biprosthecum C19 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis biprosthecium; 0.867606324 0.82555569 0.879649533 0.841006796 0.907163501 0.910587529 1.014490681 0.856314898 0.816197747 0.959857934 0.817712561 0.899266788 0.85879352 344340989 soxY Thiocapsa marina 5811 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiocapsa;species:Thiocapsa marina; 0.894258253 0.877848048 0.875147887 0.900542423 0.891407461 0.883057138 0.93182109 0.88464554 0.949598502 0.926184739 0.914889965 0.910738925 0.871493861 0.877609912 0.833885724 0.869541549 0.914233959 0.986033114 156058340 protease_aspartate_fungi Sclerotinia sclerotiorum 1980 Carbon Cycling Carbon degradation protein superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Sclerotinia;species:Sclerotinia sclerotiorum; 0.98293779 0.973419026 0.971122469 1.012331636 0.942437742 1.002500099 0.985692555 1.021901514 1.012442961 0.980227109 0.984130232 1.027780912 0.939675271 0.955452164 0.969419773 0.996310662 0.999440341 0.976959128 77383793 endochitinase Pseudomonas fluorescens PfO-1 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 0.886587105 0.898111286 0.804014179 0.878883701 0.860674786 0.853319897 0.857964969 0.877053126 0.832594358 0.851046915 0.813748475 0.892123078 0.909042469 116248770 tfdb Rhizobium leguminosarum bv. viciae 3841 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 1.320445724 1.290116966 1.271900805 1.275033072 1.279959383 1.332413487 1.279177047 1.268509471 1.2539465 1.321066188 1.304520835 1.281530366 1.275314688 1.300357764 1.267951516 1.274598163 1.288716545 1.296648417 312444782 amyA Paludibacter propionicigenes WB4 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Paludibacter;species:Paludibacter propionicigenes; 0.963202309 0.9625559 0.95014343 0.950117001 0.887377904 0.941726647 0.855244481 0.934034293 0.949491353 0.916783289 0.896702298 0.876551693 0.872324336 0.922811569 0.876272542 0.913537165 0.924944267 0.94224203 310643441 endoglucanase Paenibacillus polymyxa SC2 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus polymyxa; 0.964238096 0.949220016 0.948572256 0.908458485 1.00235977 1.031951079 0.950815613 0.927436538 0.977303322 1.005418209 0.980474452 0.960235137 0.994876269 1.02906959 1.001872676 0.946443913 0.985883286 1.015711819 337744638 beta_agarase Paenibacillus mucilaginosus KNP414 Carbon Cycling Carbon degradation Agar superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 0.821050139 0.809407735 0.781024355 0.801977795 0.816522896 0.833161998 0.816613554 0.837113847 0.828298116 0.808726709 0.832674675 335040375 CsoS1_CcmK Caldalkalibacillus thermarum TA2.A1 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Caldalkalibacillus;species:Caldalkalibacillus thermarum; 0.806422745 0.802219013 0.839266843 0.811276395 0.785980269 0.839334668 294884123 aoxb bacterium enrichment culture clone aoxheteroA50_4W Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 0.943831399 0.867217149 0.878569441 0.893356083 0.921725921 0.896289259 0.904238333 0.933147157 0.925053459 0.905684955 0.912045821 0.891755782 0.861549428 0.889203899 0.806585431 0.904322892 0.890335395 260891365 amyA Leptotrichia hofstadii F0254 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Fusobacteria;class:Fusobacteriia;order:Fusobacteriales;family:Leptotrichiaceae;genus:Leptotrichia;species:Leptotrichia hofstadii; 0.803315961 0.826646112 0.816318774 0.807816445 0.804367886 0.819790567 0.879442136 0.843953162 0.808074115 0.841417296 0.809761281 0.866877262 239833415 tktA Ochrobactrum intermedium LMG 3301 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum intermedium; 0.791465588 0.794553339 302893669 phospholipase_C_fungi Nectria haematococca mpVI 77-13-4 Carbon Cycling Carbon degradation Phospholipids superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Fusarium;species:Nectria haematococca; 0.83800033 0.841613037 0.809946764 0.83342074 0.80907623 0.820591954 0.827854144 0.82892792 0.825737727 0.849868801 0.855613168 0.83804612 356882580 endoglucanase Azospirillum brasilense Sp245 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum brasilense; 0.77394994 0.798745571 2649214 arsc Archaeoglobus fulgidus DSM 4304 Metal Homeostasis Arsenic Detoxification superkingdom:Archaea;phylum:Euryarchaeota;class:Archaeoglobi;order:Archaeoglobales;family:Archaeoglobaceae;genus:Archaeoglobus;species:Archaeoglobus fulgidus; 0.886676905 0.863468814 0.869949615 0.928898865 0.849366252 0.857378407 0.896615983 0.916861278 0.909921636 0.894589394 0.872948854 0.870155193 0.837244705 0.892080793 0.875188393 0.852205153 0.852258271 0.875245295 99083137 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.978419466 0.995721486 1.02087384 0.984440985 0.971449887 0.943421681 0.946642706 0.976423679 0.98078527 1.080019323 0.981945852 1.001687618 0.931361561 0.89822331 0.901789827 0.925277291 0.995450752 0.970170031 365748659 chitinase Enterobacter cloacae EcWSU1 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter cloacae; 1.084857291 1.072696282 1.072292177 1.080013484 1.082044797 1.080609877 1.060564161 1.084872474 1.054611156 1.056808727 1.055364771 1.073424591 1.042855776 1.055455658 1.141381593 1.069834302 1.050774972 1.040434637 320010372 ppx Streptomyces flavogriseus ATCC 33331 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces flavogriseus; 0.943573706 0.935515475 0.88066094 0.974007625 0.947977332 0.963662255 0.906496803 0.890351923 0.930866515 0.927657343 0.93754761 0.919825428 0.901423982 0.876822601 0.81907964 0.904383349 0.95476006 0.973947858 27382608 dehh Bradyrhizobium japonicum USDA 110 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 1.076146389 1.035024966 1.006726816 0.961638876 0.970381027 1.132485423 1.002420604 1.04157285 1.05726092 1.065057767 1.070726144 1.075388126 1.041115275 1.050103872 1.082729969 1.08825452 1.100720698 1.041483469 214036450 mer marine gamma proteobacterium HTCC2148 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 1.311013859 1.274874841 1.238521756 1.293606237 1.275730015 1.277929809 1.273846231 1.295012729 1.297220197 1.235238234 1.282119752 1.282113825 1.221292238 1.189775854 1.223070126 1.290658712 1.276335083 1.254318465 66801911 narg unidentified bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.129056982 1.077410555 1.067284648 1.038012118 1.053469938 1.088337405 1.028679482 1.048447129 1.044908302 1.056247168 1.052575219 1.052583059 1.050099117 1.060061363 0.994346341 1.045006705 1.066547314 1.063515535 163261663 pgk Bordetella petrii Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella; 0.962564607 0.872407794 0.911500368 0.891506009 0.926383068 0.849602408 0.903780507 0.86636207 0.876738128 0.924134485 0.945424871 0.862802395 0.867128016 0.904689869 0.841259046 0.92722295 0.911905635 0.925050842 319977609 amyA Actinomyces sp. oral taxon 178 str. F0338 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 178; 1.168235831 1.157185906 1.194013211 1.175475993 1.133507322 1.233799819 1.066786014 1.117841721 1.162809179 1.15029414 1.158415221 1.137748596 1.131196245 1.089206191 1.090781627 1.108077701 1.210234664 1.140884528 148258671 ben_bcla Bradyrhizobium sp. BTAi1 virulence NA NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.807891705 0.856685959 0.849191725 0.900096278 0.827852931 0.896699316 0.816546718 0.852154131 0.8885108 0.85257307 0.809113881 0.800679557 0.836614007 294084157 bphc Candidatus Puniceispirillum marinum IMCC1322 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;genus:Candidatus Puniceispirillum;species:Candidatus Puniceispirillum marinum; 0.846793957 0.863666743 0.869032275 0.817422623 0.841576575 0.845781339 0.828595335 0.830586637 0.874471073 0.850122988 0.906231583 0.820808927 0.842313267 0.891522277 359764917 cellobiase Gordonia polyisoprenivorans NBRC 16320 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia polyisoprenivorans; 0.948545131 0.959083849 0.878262891 0.950768329 0.882128527 0.940729496 0.881966752 0.848068993 0.932747629 0.901369861 0.868244834 0.897633986 0.866579733 0.877925914 0.866737438 0.903949319 0.973921463 0.96011653 60475992 rubisco uncultured bacterium Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria; 0.807981986 0.82649788 0.786669233 0.791491592 0.813872765 398126307 cmci Pseudomonas sp. GM21 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.870669109 0.909896261 0.913173151 0.89853821 0.945296558 0.945962156 0.965737247 0.955405818 0.859519328 0.935911508 0.910741984 0.879436058 0.86145375 0.852018603 0.898472426 0.8733853 304393545 dehh109 Ahrensia sp. R2A130 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ahrensia; 0.984583915 0.99173297 1.015532311 0.986287632 0.995383322 1.020522368 0.955914318 1.009326663 0.988580461 0.993884603 1.009724996 0.993875436 0.992635439 1.001052778 0.983251035 1.010024657 1.005466708 1.01121847 154310781 cutinase Botryotinia fuckeliana B05.10 Carbon Cycling Carbon degradation Cutin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Botryotinia;species:Botryotinia fuckeliana; 1.117044987 1.087871253 1.101041886 1.118706748 1.100436352 1.130692159 1.106120999 1.114432646 1.115199368 1.128547161 1.138894425 1.092930989 1.088672533 1.069937992 1.038644611 1.042559316 1.131337696 1.071310913 336010884 amyA Lachnospiraceae bacterium 3_1_57FAA_CT1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae; 0.987709098 0.937416477 0.995268834 1.042089302 0.955145673 0.914248099 0.912770825 0.992285921 1.00811565 0.942127569 0.937331342 1.085452557 0.965149664 0.931528416 0.944780743 0.934902315 0.983740466 0.937915205 367471631 sqr Bradyrhizobium sp. ORS 285 Sulfur Sulfide Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.985267036 0.974731718 0.947264736 0.994126029 0.935068371 0.991678597 0.97958989 0.985707944 0.977047716 0.98885661 0.931858415 0.992899827 0.906056042 0.939026778 0.862829307 0.87838125 0.963971026 1.003336826 392419847 amyA Pseudomonas stutzeri CCUG 29243 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 1.072203008 1.043095434 1.015286074 1.055414562 1.008174631 1.076334877 1.047861551 1.04920188 1.0703716 1.06204273 1.00165355 1.062108924 0.99901785 0.993277499 0.95495626 1.033593847 1.028033559 1.027541808 398337567 alkb Leptospira kmetyi serovar Malaysia str. Bejo-Iso9 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Leptospiraceae;genus:Leptospira;species:Leptospira kmetyi; 0.871801054 0.809127081 0.873997404 0.912002614 0.865555647 0.875170318 0.896052345 0.888681254 0.888386736 0.821796808 0.858425421 0.891699933 0.846188097 0.818358769 0.845850977 0.913365503 0.851052129 82618399 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.305237626 1.261937019 1.278684634 1.308542396 1.288837752 1.299243917 1.262605439 1.284092064 1.279319801 1.250479802 1.285698195 1.293781447 1.269598854 1.240264778 1.288951828 1.265270404 1.298036145 1.257110722 85669083 dehh109 Roseovarius sp. 217 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 1.307043903 1.315240621 1.295173411 1.305426965 1.285928216 1.314555193 1.265065601 1.265164454 1.287210927 1.299004435 1.284762295 1.311164122 1.283231514 1.281456753 1.272320517 1.292012927 1.316384102 1.276449615 404387763 mdlb Turicella otitidis ATCC 51513 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;genus:Turicella;species:Turicella otitidis; 1.162898034 1.1989078 1.118480799 1.167788493 1.165148563 1.207351876 1.143495382 1.153432817 1.153690086 1.142309143 1.14851206 1.164066989 1.136554482 1.104029758 1.127603842 1.147133272 1.172992115 1.17946711 148260275 PRI Acidiphilium cryptum JF-5 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acidiphilium;species:Acidiphilium cryptum; 0.785536646 0.90411728 0.869001439 0.907900742 0.838006332 0.855850788 0.829293554 0.796091671 0.839812396 0.828259922 0.839318354 0.824910494 0.827203368 0.851673564 0.909587756 209486872 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.829706549 0.791167569 0.8217812 0.844299634 0.802343351 0.780988017 0.802777334 0.838069093 0.824220664 0.840670041 0.838375351 0.866472866 67919377 nifh Chlorobium limicola DSM 245 Nitrogen Nitrogen fixation NA superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium limicola; 0.759602921 0.816739395 290960156 cellobiase Streptomyces scabiei 87.22 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces scabiei; 1.080878713 1.100186756 1.111769719 1.126459039 1.086525218 1.09226562 1.077873183 1.051276733 1.089351861 1.057015735 1.135541019 1.102734592 1.075020609 1.072679808 1.069736392 1.075630563 1.090335006 1.071879072 304407894 cysJ Paenibacillus curdlanolyticus YK9 Sulfur Reduction NA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus curdlanolyticus; 0.837536185 0.873434635 0.820957025 0.799902432 0.808496114 0.814059394 0.874848985 262014340 protease_serine_fungi Arthrobotrys oligospora Carbon Cycling Carbon degradation protein superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Orbiliomycetes;order:Orbiliales;family:Orbiliaceae;genus:Orbilia; 1.371344358 1.315818003 1.301853774 1.34812869 1.279109176 1.357031866 1.300753644 1.316392467 1.313315203 1.265173178 1.314200431 1.292138985 1.286728797 1.26234774 1.24973425 1.294576754 1.362190665 1.262602034 151302256 APS_AprB Desulfofrigus sp. HRS-La3x Sulfur adenylylsulfate reductase NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfofrigus; 0.841415533 0.786888209 0.78886551 0.802681065 336301555 rgl Paenibacillus mucilaginosus KNP414 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 0.982759211 1.04403223 1.008759566 0.974390114 1.031156268 1.037185596 0.98837504 1.005104775 0.987411878 1.020909938 1.010959169 1.019864921 0.992626891 1.032154109 0.971030525 0.97945674 0.992572439 1.024668973 198265763 dehh109 Octadecabacter arcticus 238 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter arcticus; 0.888435339 0.790690217 0.904110095 0.896046482 0.812604275 0.838331305 0.878330895 0.888080909 0.826844287 422314263 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.102983076 1.11469059 1.089251479 1.100379266 1.098220561 1.1127482 1.081886618 1.06031472 1.1087957 1.066761183 1.076418184 1.072963914 1.00200989 1.058133143 1.019507696 1.022288804 1.099953217 1.118015524 9105753 acetylglucosaminidase Xylella fastidiosa 9a5c Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xylella;species:Xylella fastidiosa; 0.908411761 0.856474564 0.858584039 0.935337559 0.797965482 0.868716323 0.831514315 0.843519039 0.989865864 0.845067546 0.836739975 0.865219755 0.862789692 0.834020611 0.851935442 0.877588784 0.881510075 150964443 pcpe Pseudomonas aeruginosa PA7 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 0.96229376 0.965206913 0.910646821 0.940102146 0.921575659 0.983018662 0.942354607 0.934834921 0.919874363 0.92572044 0.931877116 0.939208355 0.926162841 0.961936561 0.92048468 0.943380351 0.949862694 0.952199443 134142983 alkb uncultured bacterium Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria; 0.802292965 0.884122623 0.830747669 0.897895246 0.862379509 0.826228936 0.804296989 0.837860826 0.903475277 0.827602818 0.872299903 0.808560514 0.818806481 0.780829752 0.875627191 387968498 narg Pseudomonas stutzeri TS44 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 0.880047864 0.804521341 0.806603365 0.86494934 0.801759439 0.834559758 0.843710363 0.866946758 0.821135052 0.85409186 110825038 chne Rhodococcus sp. RHA1 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 0.845511754 0.822225075 0.884830967 0.821116728 0.813204713 0.860906313 0.834282946 0.797069075 0.836879091 0.871075554 0.850209322 302408527 cutinase Verticillium albo-atrum VaMs.102 Carbon Cycling Carbon degradation Cutin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticillium;species:Verticillium alfalfae; 0.885863145 0.809239048 0.889279719 0.810516983 0.846708114 0.828662005 0.861021559 0.851138637 0.869492602 0.846296621 0.869758479 0.834105541 0.849005763 295835788 atza Streptomyces sp. SPB74 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 1.283521903 1.115109898 1.205760574 1.219350049 1.084914808 1.176539047 1.193397413 1.242658993 1.263333408 1.182439671 1.143211045 1.138751419 1.159426734 1.181653043 1.175090502 1.179692314 1.257823625 1.228106766 115397631 phenol_oxidase Aspergillus terreus NIH2624 Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 0.913218207 0.946249503 1.013203652 0.978400598 0.953501826 1.008133185 0.972664057 0.954648235 0.969487497 0.973241524 1.067593439 0.939475881 0.905876374 0.902274178 0.937602134 1.019961654 1.014316424 0.925745018 388538481 arsc Advenella kashmirensis WT001 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Advenella;species:Advenella kashmirensis; 0.76850579 0.807369774 0.799112691 0.802442147 197362907 dmsa Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 0.817547024 0.823949299 0.787552453 0.811132454 0.82801607 0.831005208 0.845579343 353344424 amyA Rothia mucilaginosa M508 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Rothia;species:Rothia mucilaginosa; 1.249283834 1.241939855 1.205953123 1.246897982 1.210619642 1.247717365 1.203639955 1.209770667 1.215763664 1.188517924 1.190256783 1.212597034 1.194765966 1.189598245 1.186314531 1.210098489 1.240280973 1.191065929 326635602 phytase Pseudomonas sp. 206 Phosphorus Phytic acid hydrolysis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.842592558 0.863112289 0.862510874 0.883157015 0.872443329 0.809182029 0.851925332 0.836924697 0.841379592 0.79685377 0.826005714 0.768723264 0.814252804 0.810974614 0.840122486 0.859460951 23491547 catechol Burkholderia sp. TH2 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 0.914457402 0.879216427 0.845222778 0.873652175 0.827494208 0.793880011 0.831101656 0.860941824 0.841850302 0.836391584 0.870792135 0.821039823 0.879290097 301318948 ccmL Olsenella uli DSM 7084 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Olsenella;species:Olsenella uli; 1.068692793 0.948937379 1.02108015 1.041580726 1.02300491 0.997012299 1.031619157 1.046809996 1.036968854 1.015280153 1.159411409 1.041075177 1.002193968 0.992487689 0.93008862 0.977179048 0.984774831 0.957351098 162072856 dsrB Thiocapsa marina Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiocapsa; 0.918122023 0.846123624 0.805385174 0.886915533 0.846369832 0.864632922 0.852370681 0.840431685 0.805599432 0.845017387 0.900762555 0.863086172 124267321 PRI Methylibium petroleiphilum PM1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 1.228063518 1.183524551 1.196111132 1.216507204 1.197479484 1.222795756 1.208241967 1.216784119 1.197266625 1.183597439 1.182448004 1.217150064 1.173766166 1.162619984 1.137534782 1.184274813 1.217721322 1.187336752 170122677 cueo Escherichia albertii TW07627 Metal Homeostasis Copper Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia albertii; 1.036713106 1.081048668 1.071447868 1.009199331 1.078363979 1.053453274 1.025236801 1.032922177 1.04958767 1.059278809 1.122832441 1.055296293 1.051123187 1.11188677 1.060011746 1.014585601 1.038323647 1.047691312 348661162 ppk Propionibacterium avidum ATCC 25577 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium;species:Propionibacterium avidum; 0.988069466 1.002528219 0.971724765 0.982175849 0.951723772 0.972697657 0.931759077 0.973820646 0.969731421 0.961057664 1.006509615 0.966206151 0.884214088 0.938468136 0.832709408 0.917456925 0.961095272 1.024473354 49612434 nitro Erwinia carotovora subsp. atroseptica SCRI1043 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium atrosepticum; 0.831828208 0.798753085 0.807254577 0.834066993 0.832155577 0.836613777 0.84512056 295411260 B_lactamase_A Kyrpidia tusciae DSM 2912 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Kyrpidia;species:Kyrpidia tusciae; 1.288938629 1.273104337 1.264239357 1.269136968 1.258484884 1.2960843 1.265036464 1.275240278 1.247659682 1.253063333 1.250065373 1.251778616 1.238386453 1.20337714 1.197683307 1.218049888 1.271491948 1.250405453 356661103 cutinase Rhodococcus opacus PD630 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus opacus; 0.971288226 0.95044019 0.951759354 0.991923161 0.979669432 0.958694992 0.981235575 1.005087849 0.968522461 0.993067886 0.972802691 0.98880065 0.940766579 0.952861137 0.878153796 0.897166659 0.99470856 0.97167592 18076027 metc Pseudomonas sp. Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria; 1.04824683 1.003629124 1.017573169 1.067495381 1.014601465 1.026544716 1.021293095 1.078965387 1.051029787 0.996831992 1.006044647 1.025444808 0.970785648 0.93325773 0.966891429 0.981434162 1.042269953 1.00006125 158312294 xylanase Frankia sp. EAN1pec Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 0.955277925 0.959987231 0.924261644 0.94239563 0.941372438 0.945737309 0.886552175 0.906222679 0.898881025 0.936528418 0.947769907 0.899344991 0.918634075 0.90147406 0.918452134 0.921962006 0.989507874 0.966032277 188990400 cysJ Xanthomonas campestris pv. campestris str. B100 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas campestris; 1.175302326 1.175443517 1.17896476 1.167545492 1.165008438 1.203399546 1.113040659 1.115083111 1.169332285 1.17693202 1.254777064 1.193683371 1.147538658 1.114767724 1.132402915 1.166325886 1.176695316 1.176412488 217504649 exaa(moxf) Methylocella silvestris BL2 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Methylocella;species:Methylocella silvestris; 0.84633837 0.846280716 0.871114703 0.845047096 0.862865217 0.873973398 0.835728664 0.842226521 0.842996786 0.838618908 0.8665495 0.825041995 374584729 arsm Leptonema illini DSM 21528 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Leptospiraceae;genus:Leptonema;species:Leptonema illini; 1.10894874 1.09561756 1.087273071 1.076577981 1.079533112 1.103839941 1.068077379 1.070285314 1.096484559 1.089894649 1.089447896 1.113728087 1.048663668 1.070501269 1.073410989 1.085139505 1.107815067 1.10915025 21435824 urec Streptococcus alactolyticus Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus; 0.817666029 0.900715937 0.915305908 0.840876452 0.782295285 0.799947145 0.802233331 46850218 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.609973938 1.554826805 1.53964171 1.550351341 1.5195259 1.551116985 1.508343282 1.540252965 1.544448472 1.523027599 1.529073377 1.553632416 1.493337129 1.502965351 1.502145882 1.51206316 1.54768636 1.507943767 111022620 arsc Rhodococcus sp. RHA1 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 1.035189177 1.022370359 0.993025391 1.052305308 1.016232987 1.021739442 1.016378627 1.026880386 1.097918989 1.000600935 0.989363194 1.016562197 0.986569191 0.969386413 0.927250449 0.962118771 1.015431488 1.013827817 237858235 GAPDH_Parabasalia Joenina pulchella Other Phylogenetic NA superkingdom:Eukaryota;order:Cristamonadida;family:Lophomonadidae;genus:Joenina; 0.878372475 0.933871071 0.81933561 0.920724222 0.900250407 0.917411942 0.829623539 0.852932468 0.865388117 0.868232876 0.841476774 0.885206381 0.811131431 0.849478308 0.869060638 0.881417548 0.950749382 0.942406971 260866065 dsra Ammonifex degensii KC4 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Ammonifex;species:Ammonifex degensii; 0.906577089 0.921411252 0.899883058 0.931260203 0.916718786 0.93538663 0.903846135 0.935116497 0.933520009 0.932972692 0.868261544 0.905470978 0.881476924 0.941160871 0.942615404 0.906537367 0.928654838 0.977645484 355525508 dsra uncultured bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.978650627 1.024083431 0.990465872 0.970062615 1.040147577 0.974970553 1.030651072 0.878152825 0.965481166 1.037802324 1.04947373 0.970674206 0.987294155 1.035325947 0.920485699 0.948272938 1.001540296 1.018168372 388432429 xyla Rhodanobacter fulvus Jip2 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Rhodanobacter;species:Rhodanobacter fulvus; 1.174238506 1.164543379 1.183543742 1.158024265 1.151166848 1.207654768 1.135531889 1.134090415 1.147653212 1.123705891 1.126434071 1.136418674 1.147347061 1.126272796 1.09471205 1.11778572 1.160451949 1.1887601 261868897 mannanase Flammeovirga yaeyamensis Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Flammeovirgaceae;genus:Flammeovirga; 0.861694056 0.911821026 0.88116814 0.890160766 0.837095764 0.867835929 0.906411057 0.806464215 0.884133901 0.907040235 0.859938224 0.80511335 0.929353439 0.832064128 0.86006093 70988747 ara Aspergillus fumigatus Af293 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Aspergillus fumigatus; 0.846875786 0.872833909 0.936943605 0.907847762 0.880145321 0.834736398 0.821200697 0.834824484 0.866312607 0.844938279 0.828747416 0.873745296 0.902881629 0.841834876 355376607 amyA Selenomonas noxia F0398 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas noxia; 0.818443209 0.857951961 0.805422082 0.829774116 316944975 aps_apra Desulfovibrio aespoeensis Aspo-2 Sulfur adenylylsulfate reductase NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio aespoeensis; 0.986204759 1.011089262 0.979792884 0.970325326 1.020832381 1.021813847 0.984979367 0.956622649 0.971508985 0.986968523 1.02536767 0.996815612 1.014696732 1.00232717 1.122766196 0.957567313 1.029146137 1.030212809 117999993 ophc Comamonas testosteroni KF-1 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 0.960989646 0.937226217 0.886299056 0.929647383 0.898410745 0.950070576 0.855977295 0.859109862 0.918738544 0.8245019 0.854296386 0.936922387 0.887289876 0.893056581 0.915980975 0.903324406 0.944470174 0.932771187 373875342 amyA Leptonema illini DSM 21528 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Leptospiraceae;genus:Leptonema;species:Leptonema illini; 0.981339238 0.955969795 0.936218186 0.994927715 0.8981523 0.985810823 0.886214112 0.903007979 0.941010623 1.006640124 0.948269854 0.917359892 0.863671634 0.939141724 0.860597016 0.883226412 0.959332258 0.970657511 73762890 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.975957528 1.034477941 0.996934651 1.008348256 1.008146533 1.003533972 0.986190219 1.006850453 1.021068157 1.0148232 0.993138995 1.02393464 0.976192288 1.033216614 0.965530282 1.002161024 0.998674653 1.01182579 363984515 CsoS1_CcmK Thermanaerovibrio velox DSM 12556 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Synergistetes;class:Synergistia;order:Synergistales;family:Synergistaceae;genus:Thermanaerovibrio;species:Thermanaerovibrio velox; 0.800850715 0.758779722 162568577 aoxb uncultured bacterium Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 0.944836933 0.941414623 0.962383132 1.029139233 0.892309922 0.936883332 0.901579316 0.964315398 0.967041134 0.94799788 0.890873056 0.905085061 0.816274836 0.872206031 0.878056043 0.869681349 0.938638331 0.93498466 357405128 urec Methylomicrobium alcaliphilum Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylomicrobium; 1.094142452 1.049472739 1.053731942 1.075350864 1.062934102 1.041999593 1.065244268 1.059454285 1.053719165 1.030055672 0.969822419 1.02548015 0.988401343 0.975331128 0.971422335 0.96981185 1.054559516 1.052258856 284448105 nitrate_reductase uncultured eukaryote Nitrogen N Assimilation NA superkingdom:Eukaryota; 0.741819821 0.804526294 0.837158726 0.827176899 0.83687535 0.813665534 0.7907285 387502969 amyA Propionibacterium acnes 6609 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium;species:Propionibacterium acnes; 0.851499629 0.837096823 0.877633827 0.849776615 0.896135022 0.814235557 0.855733136 0.849421427 0.809278638 0.818622265 0.818744082 0.907640911 223886535 phenol_oxidase uncultured fungus Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi; 0.996596588 1.011566151 1.100519009 1.024329596 1.020010183 1.010027579 1.009467476 1.006708986 1.009894821 0.999460934 0.996586785 0.974226469 0.955874432 0.986489588 0.965686049 0.943443221 0.991253566 0.984332462 110350788 nirk Nisaea denitrificans Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Nisaea; 0.785176699 0.796555507 0.811505748 0.769439606 0.817938369 0.781010534 118029371 catechol Burkholderia phymatum STM815 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 1.009370494 0.988825492 0.952837273 1.009795762 0.986568931 0.991330491 0.966178674 0.983694577 0.999534271 0.978003299 0.984934952 0.998635455 0.9326348 0.928612871 0.931819723 0.936748682 1.007558473 0.997909844 365972455 nirb Enterobacter cloacae EcWSU1 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter cloacae; 1.158636998 1.130466701 1.151212652 1.143953123 1.107887667 1.139098978 1.101160045 1.106679878 1.13225384 1.084740014 1.072837172 1.105050657 1.078600332 1.047532663 1.092186183 1.08770899 1.158853367 1.108538136 90954563 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.897811401 0.885399033 0.877178711 0.931157941 0.99792735 0.876723004 0.888087525 0.857915142 0.908393402 0.841458056 0.875662552 1.031932099 0.885001852 0.847978612 0.844432901 0.916013453 0.881733661 291582265 TIM Nitrosococcus halophilus Nc4 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Nitrosococcus;species:Nitrosococcus halophilus; 0.927163661 0.90802445 0.944572048 0.961837749 0.86720929 0.924766252 0.90732709 0.941400537 0.922797955 0.940741741 0.99209083 0.952935627 0.861539597 0.889472532 0.869782461 0.893295843 0.918499875 0.931813095 288352045 tfda Frankia sp. EUN1f Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 0.858801336 0.799820501 0.868476259 0.863415498 0.868386251 0.867128243 0.836888988 0.877946908 0.851802747 0.849113717 0.84168431 0.871499863 0.824122498 153889031 dehh109 Ralstonia pickettii 12D Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 0.987600047 0.985087219 0.999126409 1.007673678 0.979906727 0.995881327 0.972578687 0.976004209 0.994020174 1.052000535 0.996939564 0.998032733 0.994544936 0.952157588 0.928940755 0.960390851 1.018239067 1.025577163 403722799 badh Gordonia rhizosphera NBRC 16068 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia rhizosphera; 1.116353365 1.073504304 1.107907479 1.117457742 1.110282165 1.100354589 1.09467482 1.072582328 1.120316665 1.096548133 1.106434544 1.128065478 1.037160464 1.0627544 1.061595376 1.037438961 1.0827638 1.033307556 385763664 dsra uncultured bacterium ws156A7 Sulfur sulfite reduction NA superkingdom:Bacteria; 0.780720903 0.803896699 0.820360625 0.801368366 0.793191525 0.836694597 346918938 PRK Azospirillum amazonense Y2 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum amazonense; 0.982579877 1.019016326 1.011188158 0.983004386 1.005481388 1.000531188 1.005446381 0.9914417 0.996412102 1.053327105 1.068237761 1.031660772 0.987483853 0.966514107 0.929472644 0.993461932 1.004307697 1.028769133 260402705 atza Dialister invisus DSM 15470 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Dialister;species:Dialister invisus; 0.885111864 0.845998968 0.913401536 0.935840533 0.829210147 0.864230166 0.848406444 0.897333259 0.872033253 0.843086383 0.897644215 0.932910212 0.826105337 0.831404837 0.868283894 0.865450523 0.872124837 0.863648901 196482314 tfda uncultured bacterium Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria; 0.770336 0.838553608 0.787982224 0.862613988 0.806316775 0.820303509 0.791651176 0.836253348 0.861415419 0.811118678 0.845606496 0.852003932 126627815 phn Marinobacter sp. ELB17 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter; 0.784150269 0.858064725 0.776465558 0.769583345 0.79859213 193244833 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 1.235090258 1.22318767 1.226957729 1.243831296 1.223107738 1.212600391 1.198099924 1.232004406 1.249228638 1.211266722 1.211450925 1.229582046 1.190338884 1.166497158 1.161347772 1.164622978 1.228792233 1.228702917 254440258 tktA Octadecabacter antarcticus 307 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 1.135423888 1.102491283 1.132872914 1.178949708 1.14168889 1.130537671 1.12345345 1.156883782 1.137900369 1.103111767 1.132391639 1.129637153 1.127559323 1.088396711 1.120310666 1.121867622 1.150232075 1.096637046 116626300 ara Solibacter usitatus Ellin6076 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 0.881500835 0.82132392 0.830989672 0.842789995 0.79410998 0.879620848 0.822109112 0.827839442 0.8635238 0.868654845 344690092 rubisco uncultured bacterium Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria; 0.916035376 0.909918734 0.903018768 0.944608068 0.881110195 0.889515053 0.884282984 0.967186263 0.956750516 0.916973816 0.877091016 0.939334094 0.865751538 0.892946319 0.858133312 0.891104308 0.928476687 0.938343533 329119753 tehb Neisseria bacilliformis ATCC BAA-1200 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria bacilliformis; 1.456210263 1.436970463 1.411521694 1.436434662 1.405245958 1.449521273 1.399023735 1.403536797 1.390488849 1.396452885 1.402553962 1.408225394 1.39866124 1.376789199 1.38740411 1.414656471 1.447552764 1.392024261 225574173 amyA Blautia hydrogenotrophica DSM 10507 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Blautia;species:Blautia hydrogenotrophica; 0.893704111 0.935674777 0.91167773 0.900675746 0.922435305 0.869042559 0.941369466 0.937693167 0.900151349 0.916699092 0.899504846 0.904414215 0.941109326 0.866178683 0.889847773 0.852262123 0.934695886 0.927081406 3660499 xylanase Claviceps purpurea Carbon Cycling Carbon degradation Hemicellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Clavicipitaceae;genus:Claviceps; 0.816980907 0.809068934 0.810437604 334137642 nirb Paenibacillus sp. HGF7 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 0.864106308 0.866696876 0.815844922 0.879500706 0.826339332 0.84223119 0.81122937 1.139099517 0.833206541 0.877517728 0.900052266 320091793 rubisco gamma proteobacterium BW-2 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 1.166482281 1.119046608 1.115034936 1.132079922 1.122913028 1.121623986 1.144963333 1.123142116 1.10947954 1.115825925 1.121388137 1.128898928 1.089219947 1.059820437 1.058850953 1.08076467 1.103905713 1.11831114 145357127 actin_Viridiplantae Ostreococcus lucimarinus CCE9901 Other Phylogenetic NA NA 1.156232852 1.135955452 1.110596844 1.172979068 1.11820202 1.173348552 1.126096763 1.15894938 1.15210391 1.139413449 1.138035145 1.168813948 1.121696185 1.13340036 1.138458255 1.145326683 1.160916137 1.108497095 170027493 napa uncultured bacterium Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria; 1.376283227 1.373192434 1.346548863 1.35758863 1.36558781 1.415123942 1.360980934 1.343654243 1.343618359 1.387331703 1.372900431 1.363948375 1.332215073 1.325810413 1.289350628 1.342077949 1.371234511 1.351202 152988445 nosz Pseudomonas aeruginosa PA7 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 0.838095738 0.859176576 0.882243986 0.87134183 0.801101223 0.790713756 0.808855847 0.83776405 0.814301069 0.890265887 0.918740477 387889647 gdh Escherichia blattae DSM 4481 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Shimwellia;species:Shimwellia blattae; 0.901204504 0.909210834 0.823874917 0.915200795 0.86160304 0.84550539 0.840504777 0.822149461 0.869014489 0.871956828 0.835285479 0.873945876 0.824758721 0.909709782 0.887164429 315001900 aoxb uncultured alpha proteobacterium Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 1.30177505 1.26804241 1.250208435 1.267726995 1.238175911 1.283316953 1.254717304 1.250565694 1.261850756 1.238455676 1.259365265 1.258663251 1.259392932 1.199346001 1.231457903 1.235053842 1.292455463 1.251596093 358639813 tktA Azoarcus sp. KH32C Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 1.227920985 1.205180012 1.187148722 1.215020923 1.155437047 1.214179283 1.169367725 1.208928916 1.198134024 1.190667331 1.182902109 1.214090357 1.175109878 1.180660301 1.166953491 1.182953511 1.219870409 1.204597806 374606499 fosb Paenibacillus dendritiformis C454 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus dendritiformis; 1.025899379 1.00517451 1.057015786 1.010689808 0.985408517 1.032560886 0.993532801 0.947083564 0.964560208 0.98610047 1.079155654 0.970632409 0.945749583 0.961348336 0.958721245 0.980068282 1.004937096 0.99629724 54016003 urec Nocardia farcinica IFM 10152 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 1.311071171 1.330350515 1.306958031 1.299640261 1.315901447 1.31177997 1.278294958 1.272670804 1.273935394 1.306907154 1.293748275 1.302093595 1.284336252 1.29854578 1.284012436 1.27437557 1.325520401 1.308493897 116061987 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.908113 0.924424371 0.924091883 0.925889138 0.957184146 0.933690135 0.969580623 0.922726682 0.946790114 0.936847995 0.977918852 0.982703884 0.924052702 0.888461911 0.937771959 0.907341774 0.933204446 0.912889163 294472473 ara Prevotella ruminicola 23 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella ruminicola; 0.978381147 0.9722269 0.979720968 0.964896457 1.016238716 0.987918174 0.992557258 0.975968166 0.908425823 1.00867243 1.011333481 0.984260508 1.020923328 0.993815405 0.931566162 0.926301691 0.981567151 0.997396627 358385925 dehh109 Trichoderma virens Gv29-8 Organic Remediation Chlorinated solvents NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Hypocreaceae;genus:Trichoderma;species:Trichoderma virens; 0.969637614 0.980914157 0.963061284 0.972480793 0.950387298 0.984024962 0.95045894 0.943827551 0.980539494 0.950495795 0.973468336 0.954122192 0.929912385 0.969571271 0.961336353 0.941455953 0.970196601 0.983162163 261345041 ccmL Providencia rustigianii DSM 4541 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia rustigianii; 0.765687813 0.811402034 0.804897688 0.85085763 0.782034399 0.86852106 0.830582063 0.844812745 0.805710816 0.810238189 0.826140773 0.805838807 1.003230696 0.872019041 0.848719894 206566527 arsc Klebsiella pneumoniae 342 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 0.895240549 0.922490403 0.92293216 0.898831216 0.888490311 0.967593962 0.86616813 0.871917494 0.89097118 0.979119347 0.919976726 0.90125775 0.88253133 1.016985258 0.946184167 0.892179165 0.943042169 0.932047738 218458458 pula Rhizobium etli Kim 5 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 0.994259706 1.017380255 0.96076605 0.994099168 1.00766152 0.983653834 0.958315592 0.955375522 1.013913388 0.983798494 1.011193941 1.014515721 0.945816974 0.949064321 0.991368081 0.953397973 0.979458065 0.987938557 308226450 linb Oscillochloris trichoides DG6 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Oscillochloridaceae;genus:Oscillochloris;species:Oscillochloris trichoides; 1.035080043 0.977746211 1.066313473 1.093661726 0.994824882 0.972820491 1.053313489 1.179970488 1.016813261 1.017184478 1.096087197 1.113269407 1.012590589 0.983494805 0.969772925 1.023521023 1.02750648 0.993583667 163258286 pcag Bordetella petrii Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella; 1.367657765 1.356364769 1.334524392 1.32891379 1.30658394 1.375367435 1.314661904 1.329162958 1.313411384 1.31123436 1.329206913 1.331735332 1.29230981 1.310081551 1.301316749 1.32872518 1.348294984 1.3252472 383781672 amyA Actinoplanes missouriensis 431 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes;species:Actinoplanes missouriensis; 1.128749837 1.130993945 1.092453727 1.097245986 1.087670187 1.146192988 1.057952606 1.107899803 1.076099461 1.121331537 1.059190879 1.088338591 1.046895475 1.086870732 1.031437229 1.077504364 1.105923724 1.139462142 83727244 phn Ralstonia solanacearum UW551 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 0.907085004 0.91816663 0.896080229 0.954232473 0.893974371 0.906469741 0.93919949 0.919775105 0.901231225 0.892276925 0.91425541 0.934768959 0.808910406 0.825703288 0.886272834 0.868754127 384220656 chnb Bradyrhizobium japonicum USDA 6 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 0.97889706 0.996511997 0.9679293 0.961153092 0.948601304 0.966367883 0.96126596 0.96435101 0.964757659 0.93472103 0.966187774 0.966841804 0.919011782 0.89418857 0.890305614 0.924569194 0.987427857 0.998538059 323273830 amyA Microbacterium testaceum StLB037 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Microbacterium;species:Microbacterium testaceum; 1.061958338 1.056703895 1.041680334 1.048036582 1.016581371 1.075777468 0.995496936 1.019937145 1.031915845 1.049184956 1.041234938 1.014301992 1.022028591 1.002047244 0.98700801 1.03343594 1.066842565 1.050681459 226363705 mhpa Rhodococcus opacus B4 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus opacus; 0.824249499 0.790827517 0.826416849 0.808299465 121705728 endochitinase Aspergillus clavatus NRRL 1 Carbon Cycling Carbon degradation Chitin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 0.931487552 0.899704054 0.908028248 0.960619022 0.942824732 0.894855597 1.037190256 1.004748222 0.966007627 0.937836549 0.932353765 0.947845956 0.90636809 0.886587167 0.894970632 0.934367908 0.921503481 0.933261121 149783065 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.94684145 0.91744228 0.893279025 0.896994758 0.889168654 0.887136267 0.851592171 0.859655125 0.861371449 0.888532101 0.877856405 0.87705742 0.901968598 0.811271007 0.83374556 0.935478813 0.917425288 146191528 FBPase Bradyrhizobium sp. ORS 278 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.840661414 0.816933091 0.806681807 0.809932087 0.842665199 0.864538363 0.828342105 0.809148099 0.810765308 0.863506204 0.842131848 0.846037629 0.825119301 0.903585121 0.887416987 0.816836958 0.896503229 0.900463264 115400958 lactase_fungi Aspergillus terreus NIH2624 Carbon Cycling Carbon degradation Lactose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 0.91953674 0.909372885 0.919709017 0.967539841 0.932330376 0.913710786 0.918983034 0.926740049 0.956956075 0.855028716 0.899695716 0.945682985 0.915883025 0.863291482 0.90824251 0.887247527 0.955084766 0.902299086 182412827 acetylglucosaminidase Opitutus terrae PB90-1 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 0.82659469 0.805304653 0.804676659 0.838785198 0.827819021 0.801621643 0.829856326 0.821277209 0.876782966 0.830178475 0.84610259 0.804024826 0.786034555 0.837557664 0.824286184 71906990 cara Dechloromonas aromatica RCB Organic Remediation Aromatics Heterocyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Dechloromonas;species:Dechloromonas aromatica; 0.829784254 0.800228116 0.888987335 0.830786734 0.824566754 0.852695612 0.878970325 0.839144918 146338092 arylest Bradyrhizobium sp. ORS278 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 1.17984353 1.183916488 1.161317063 1.213306455 1.148310216 1.176527293 1.165704617 1.189875501 1.183191944 1.167825205 1.131982762 1.175558255 1.140322478 1.132360308 1.151857516 1.159936802 1.176039581 1.17145777 32895106 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.109832988 1.122587526 1.118749674 1.186029367 1.12547118 1.125660677 1.106808773 1.163379233 1.161558249 1.166968746 1.102550986 1.159840522 1.107541293 1.089068449 1.106451729 1.121652352 1.159089495 1.160531574 321161571 amyA Granulicella tundricola MP5ACTX9 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Granulicella;species:Granulicella tundricola; 1.535278318 1.512288692 1.527635309 1.494973018 1.512370633 1.533094264 1.486653599 1.528835773 1.489541706 1.499597516 1.505074764 1.521246712 1.485776806 1.48656033 1.53179502 1.509855022 1.494645902 1.48359259 237878758 xylc Burkholderia glumae BGR1 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia glumae; 1.122054854 1.068668061 1.093197478 1.159605804 1.064399524 1.052991102 1.065751968 1.089582854 1.108966791 1.059464494 1.091844679 1.108031475 1.065027034 1.024007605 1.050271493 1.093583238 1.110476543 1.06484664 116620221 RgaE Candidatus Solibacter usitatus Ellin6076 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 1.002777281 1.027741619 1.000608858 1.019387322 0.97463773 1.020666721 0.992683 0.975889352 1.01534248 1.038369731 0.993011028 0.996193567 0.999779169 1.031388316 1.007401826 0.997533416 1.022536924 1.024596498 38488532 bphc Pseudomonas graminis Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.830819751 0.784273056 0.816730724 0.827223048 0.899376548 0.821435735 0.882923943 0.846046044 0.829217748 0.812563938 0.817437936 0.780950155 6491822 mer Streptomyces coelicolor A3(2) Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 1.469699723 1.432199831 1.43899232 1.429095813 1.405751647 1.484651185 1.398966952 1.418106313 1.415299585 1.406617664 1.420244938 1.406821552 1.396351892 1.396758404 1.370096004 1.407516599 1.44493283 1.430450973 385866914 alkb uncultured bacterium Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria; 0.927888471 0.947793936 0.907317237 0.953413872 0.877713332 0.874931348 0.881963982 0.925040207 0.932813227 0.922025508 0.880682467 0.895254451 0.841614781 0.846292676 0.856535429 0.946426215 0.958254848 375081626 phytase Paenibacillus sp. Aloe-11 Phosphorus Phytic acid hydrolysis NA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 0.997764918 0.999817064 0.9327471 0.953694928 0.980858492 0.955364007 0.949165296 0.933977136 0.96163618 0.96032736 0.997798158 0.947541617 0.953635438 0.912111467 0.837827651 0.961763842 0.972825781 0.951622781 334132837 catechol_b Methyloversatilis universalis FAM5 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Methyloversatilis;species:Methyloversatilis universalis; 1.284551121 1.276508305 1.295662325 1.307964358 1.285825787 1.263340221 1.275220008 1.267065565 1.268689447 1.296677492 1.296036805 1.320939966 1.248480043 1.247384316 1.266111047 1.259047435 1.231582489 1.249224399 338823703 b_lactamase Agrobacterium tumefaciens F2 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 0.859501591 0.788421143 0.870511649 0.798869643 0.806781123 0.841644418 0.832945516 0.863859982 0.845419314 296138350 pcag Tsukamurella paurometabola DSM 20162 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Tsukamurellaceae;genus:Tsukamurella;species:Tsukamurella paurometabola; 1.207295845 1.182539807 1.19286961 1.210645171 1.195376458 1.21361638 1.20281191 1.226302412 1.192848936 1.170569288 1.195224088 1.214732386 1.212771064 1.16100412 1.157055335 1.187252956 1.217961059 1.168507848 367472666 catechol Bradyrhizobium sp. ORS 285 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.909963545 0.92335819 0.873595278 0.888623333 0.911255179 0.863963302 0.875702022 0.873442006 0.848434469 0.886293577 0.819237441 0.859958681 0.848863166 0.858628208 0.830061153 0.905867812 0.947975226 46308010 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.837063006 0.810812003 0.814618819 0.861236199 0.808194754 0.831569256 0.826726161 0.834902962 147848730 ppx Synechococcus sp. WH 7803 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 1.07659501 1.098718453 1.056490099 1.053520373 1.069309048 1.097341524 1.066699512 1.073866157 1.037852223 1.07190953 1.046211262 1.06263335 1.033047429 1.057043237 0.988549875 1.044236573 1.059844523 1.077719176 359145569 xylc Streptomyces sp. S4 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 1.016789529 1.113097771 1.037236517 1.023642872 1.037361373 1.101609097 0.985608725 1.026903654 0.951333189 1.022624835 0.979454323 1.008591314 1.004629285 1.027641337 1.005547657 0.993045851 1.025861296 1.100371575 83726398 nahf Ralstonia solanacearum UW551 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 1.219170897 1.221935426 1.19502594 1.196301727 1.171475189 1.222401246 1.193541856 1.179700152 1.20138096 1.204737869 1.339276957 1.192711476 1.140008284 1.156159231 1.102778409 1.174149484 1.190507962 1.195925127 89952115 alginase Saccharophagus degradans 2-40 Carbon Cycling Carbon degradation Alginate superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Saccharophagus;species:Saccharophagus degradans; 0.924996105 0.969496312 0.918997801 0.966032642 0.907654513 0.923954496 0.95304821 0.955496822 0.970162543 0.945773234 0.906932054 0.960664826 0.917685456 0.90706755 0.96250032 0.945544325 1.036348068 0.95170629 145595773 endochitinase Salinispora tropica CNB-440 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora tropica; 0.832050619 0.933743781 1.032197271 0.936614189 0.85038026 0.88047453 0.801088241 0.878495581 304396310 cysJ Pantoea sp. aB Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 0.900228796 0.849703825 108763120 cysI Myxococcus xanthus DK 1622 Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus xanthus; 1.497799819 1.442996776 1.436033466 1.438285117 1.430211331 1.455296783 1.411761922 1.44649132 1.424560478 1.424374329 1.406413096 1.449664165 1.405598603 1.407110673 1.405127372 1.433341674 1.425377022 1.421257017 149783343 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.829346168 0.896275234 0.878426233 0.811508778 0.825172939 0.828896353 0.793780293 0.881810523 0.844466193 47933806 mannanase Bacillus circulans Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 0.922990043 0.966514706 0.904773901 0.919117445 0.989735913 0.921136822 0.928718195 0.91072979 0.912442819 0.935353231 0.890107167 0.927895715 0.908004673 0.873631671 0.843261778 0.891306253 0.927422885 0.946127928 332040510 b_lactamase Hylemonella gracilis ATCC 19624 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Hylemonella;species:Hylemonella gracilis; 0.993273238 0.999465327 0.973799711 1.001337794 0.985402345 1.081268337 0.950290423 0.954030491 0.939922092 0.967872618 0.945697205 1.087968127 0.994492753 0.901897722 0.929556622 0.936911459 1.002389315 0.99321297 296130681 ara Cellulomonas flavigena DSM 20109 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas;species:Cellulomonas flavigena; 1.100860103 1.099493943 1.044594297 1.05703243 1.024609629 1.068248514 1.018173064 1.049937076 1.052756335 1.068717653 1.033203189 1.047138806 1.034998806 1.039048731 1.002153762 1.039926534 1.088367301 1.083707515 48290 amyA Thermoactinomyces vulgaris Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Thermoactinomycetaceae;genus:Thermoactinomyces; 0.831359012 0.946270675 0.816894209 0.848203508 0.836568568 0.909134913 0.885537126 0.879864351 0.867957621 0.845941971 0.850432101 0.831189476 0.850453901 0.822400887 0.855272698 0.898068653 220725571 badh Postia placenta Mad-698-R Organic Remediation Aromatics Other aromatics superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Postia;species:Postia placenta; 1.302687409 1.252973854 1.272410726 1.287761868 1.248272926 1.276708451 1.267067812 1.274917531 1.27461697 1.240430121 1.231044215 1.241316616 1.216936077 1.199016872 1.232680918 1.224586132 1.29375934 1.240271601 328812484 amyA Verrucosispora maris AB-18-032 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Verrucosispora;species:Verrucosispora maris; 1.254224241 1.22814077 1.21622318 1.227092556 1.204359956 1.26519404 1.123498861 1.171605092 1.213079875 1.211628655 1.197476425 1.24117099 1.203682646 1.190848361 1.147878646 1.170527511 1.267443441 1.227943107 357427789 cellobiase Azospirillum lipoferum 4B Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum lipoferum; 0.868848733 0.807931188 0.831572358 0.849362384 0.805816105 0.835769718 0.82148748 0.807195142 421953068 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.837172195 0.852586386 0.894854236 0.82499838 0.861391673 0.825213389 0.833300393 0.864572478 0.849113303 0.830948015 0.866352042 0.867137782 0.879425086 337759635 tmoabe Hyphomicrobium sp. MC1 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium; 1.133896135 1.154590769 1.106019787 1.092289094 1.098117607 1.119793812 1.100566737 1.101311934 1.074800695 1.086133622 1.102239652 1.100360777 1.048344598 1.049353945 1.01363987 1.041008227 1.091709158 1.130800564 118703293 nitrilase Sphingomonas wittichii RW1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 1.55258799 1.501739162 1.487178341 1.503221901 1.49224245 1.539880076 1.47251666 1.492074373 1.475679351 1.47191777 1.488428139 1.495461324 1.494457606 1.440775207 1.483092309 1.482374778 1.539309737 1.47019226 118027429 nitrilase Burkholderia phymatum STM815 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 1.015379561 0.963646145 0.942094211 0.957869445 1.004385915 0.996477441 0.975842096 0.955563146 0.986860209 0.996757648 0.962026706 0.974513469 0.972500353 0.9627326 0.917273042 0.9529585 0.977491189 1.021374078 83972398 nosz uncultured alpha proteobacterium Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 0.999364016 0.998629034 0.945828943 0.979447257 0.961226791 1.046922648 0.90355452 0.924976796 0.970847559 0.960761845 0.899165576 0.920015809 0.952710706 0.923432833 0.889507587 0.953106714 1.005564796 0.994757734 91784666 pcpe Burkholderia xenovorans LB400 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 0.799810653 0.817638678 153888844 mdlc Ralstonia pickettii 12D Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 0.928280669 0.884900878 0.871606332 0.924690465 0.882599823 0.908162547 0.852653544 0.853416879 0.89473348 0.911913622 0.931959182 0.857871953 0.858051047 0.917323556 0.856251249 0.875925188 0.918468711 0.911141085 319750450 CsoS1_CcmK Isosphaera pallida ATCC 43644 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Isosphaera;species:Isosphaera pallida; 1.458974332 1.428399893 1.425613377 1.441506237 1.426040734 1.452913712 1.403614271 1.429970845 1.418221414 1.414864018 1.432020053 1.439687661 1.404968513 1.39738837 1.439067366 1.415289663 1.442967581 1.403910684 177840407 ara Opitutus terrae PB90-1 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 0.858315713 0.878554699 0.808346015 0.897163632 0.843099674 0.865471489 0.884575732 0.848066016 0.877418733 0.821559082 0.849592583 0.852592699 0.884673132 0.858770136 295897706 cutinase Mycobacterium parascrofulaceum ATCC BAA-614 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium parascrofulaceum; 1.116457086 1.101165094 1.092958277 1.14655305 1.115331691 1.110409363 1.110819261 1.113322708 1.097162714 1.079987085 1.086201582 1.111927582 1.058379313 1.058906254 1.067556029 1.04644231 1.09610232 1.110466091 46915039 ppx Photobacterium profundum SS9 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium profundum; 1.013115355 1.034783552 1.015725127 0.987184842 1.011337221 1.038875494 0.988202807 0.978426801 0.9617928 0.998444101 0.963430285 0.949879415 0.977353364 0.986479624 0.975114453 0.991047954 1.025640933 1.03575995 255292489 catechol_b uncultured bacterium Organic Remediation Aromatics Other aromatics superkingdom:Bacteria; 0.883920569 0.870568968 0.882681649 0.891795608 0.889452475 0.841102135 0.912117663 0.885207546 0.897666583 0.872536644 0.820954944 0.899879584 0.797315622 0.84798804 0.837271096 0.870411413 0.882328572 367478425 FBPase Bradyrhizobium sp. ORS 285 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 1.13546684 1.134229422 1.089563879 1.121499328 1.057445983 1.115870026 1.089163957 1.101026802 1.112935694 1.112849423 1.0985057 1.093621914 1.073080561 1.076618449 1.052691299 1.073358141 1.12408941 1.120078376 315271263 amyA Deinococcus deserti VCD115 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus deserti; 0.83027765 0.794025526 0.812581802 0.876933965 0.838379596 357037705 aln Desulfotomaculum gibsoniae DSM 7213 Organic Remediation Others NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum gibsoniae; 1.040960944 1.003488671 1.023496324 1.019324178 0.98374402 0.986835031 0.995823302 1.062755424 1.011633877 1.008249225 0.99724203 1.049505789 0.974072023 0.960120251 1.006601735 0.978896657 1.026233594 1.006263099 87302496 CsoS1_CcmK Synechococcus sp. WH 5701 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 1.07019085 1.06478149 1.051316469 1.10889545 1.065044555 1.118302856 1.00689732 1.057630734 1.039830243 1.074851003 1.038410504 1.064198903 1.035912999 1.062874199 1.014544727 1.050072008 1.09559303 1.076516056 227937723 fthfs uncultured Alkaliphilus sp. Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Alkaliphilus; 0.996723147 0.966986709 0.984117284 0.974537347 0.967022698 0.978670353 0.978590239 0.972091398 0.969122238 0.955638909 0.917086706 0.945212693 0.930736342 0.941334141 0.877660066 0.903200462 0.98463533 0.971580376 329901004 TIM Oxalobacteraceae bacterium IMCC9480 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae; 0.812910862 0.805142917 0.854010692 0.810790248 0.823921769 0.80797692 0.855273676 0.819462834 0.853112529 0.825665969 0.829507201 0.82444688 339274371 amyA Synechocystis sp. PCC 6803 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechocystis; 0.80992894 0.836025224 0.802584997 0.872702085 0.825499763 0.821116491 0.828914375 0.87714014 0.833353928 0.790510071 0.921053961 0.80213902 0.854826297 0.80451779 0.829620236 0.831651975 154341937 GAPDH_Euglenozoa Leishmania braziliensis MHOM/BR/75/M2904 Other Phylogenetic NA superkingdom:Eukaryota;order:Kinetoplastida;family:Trypanosomatidae;genus:Leishmania;species:Leishmania braziliensis; 0.955186923 0.904058214 0.929632322 0.944851914 0.915890547 0.925312361 0.822799048 0.931189611 0.924393599 0.908557611 0.850907067 0.873801327 0.8585004 0.873406788 0.867780909 0.929135718 0.926908708 222106906 vdh Agrobacterium vitis S4 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium vitis; 0.779196606 0.824617882 0.795648638 0.760753789 0.819887006 0.82115622 82716671 oxdb Pseudomonas putida F1 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 1.032669171 1.051661653 0.987089032 1.011166495 0.970069134 1.045543354 0.946252633 0.983548637 0.982392887 0.985219895 0.943847414 0.995516679 0.947476974 0.99262392 0.932130294 0.942220546 1.044210106 1.031230095 196479344 xylanase Phenylobacterium zucineum HLK1 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Phenylobacterium;species:Phenylobacterium zucineum; 1.293803218 1.271702111 1.273442349 1.294841133 1.260749078 1.281413515 1.259533369 1.276059525 1.267029265 1.253335115 1.240989504 1.249321193 1.238357285 1.212733423 1.201565955 1.226760176 1.287755474 1.229622259 373102618 SoxC Cupriavidus basilensis OR16 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus basilensis; 1.319300354 1.252745137 1.265308616 1.272814376 1.240582606 1.292214185 1.249818364 1.25156018 1.266831373 1.241266568 1.226788522 1.255482025 1.225537731 1.188723876 1.217236493 1.225562849 1.296998618 1.236799545 302436838 amyA Streptomyces sp. AA4 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 1.025560789 1.085727478 1.049387889 1.06365708 1.04010073 1.055408728 1.030887882 1.027189514 1.005828212 1.021699815 0.988935451 1.040592036 1.013475955 0.966620691 0.994118332 1.025974528 1.055704082 1.02558899 56785448 phenol_oxidase Trametes sp. 420 Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Trametes; 0.800631046 0.812443162 0.78739631 0.861126461 0.804398253 0.797814443 0.819755124 0.797028842 0.872292728 0.815375666 0.829024117 336301569 endoglucanase Paenibacillus mucilaginosus KNP414 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 0.97168112 0.947997516 0.965912234 0.956553727 0.978626779 0.980226718 0.951506346 0.947386548 0.971663028 1.010542795 0.966817589 0.937728918 0.915198092 1.009635478 0.958165912 0.93860494 0.970954838 0.981306676 167836550 bphF1 Burkholderia thailandensis MSMB43 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia thailandensis; 1.377353222 1.329423279 1.331914654 1.345927692 1.316801863 1.352294367 1.310674519 1.32764204 1.340286735 1.322732692 1.31817707 1.343455875 1.311995639 1.302177526 1.30200884 1.329350011 1.3510887 1.305637856 240009291 exaa(moxf) Methylobacterium extorquens AM1 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium extorquens; 0.977548448 0.974562489 0.982838294 0.968227704 0.990406706 0.990676855 0.970697243 0.915662582 0.966697972 0.902270263 0.888429814 0.930224665 0.914768303 0.91669409 0.900267808 0.898400705 0.986876337 0.996325031 189092779 lactase_fungi Penicillium expansum Carbon Cycling Carbon degradation Lactose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium; 0.85608943 0.949325611 0.851087983 0.870939136 0.881886967 0.871326965 0.905170129 0.915634501 0.921039452 0.893599371 0.909879495 0.87280869 0.848552082 0.933782686 0.817259996 0.841630711 0.855251434 0.865198294 94470859 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.872140019 0.816881078 0.868838917 0.951895339 0.958117581 0.870781687 0.954100478 0.901762181 0.92867788 0.862761608 0.905595155 0.90309186 0.847205822 0.786467867 0.833097852 0.882733056 0.856055978 108524633 mer Plasmid QKH54 Metal Homeostasis Mercury Detoxification 0.894303234 0.995462374 0.99687627 0.911309108 0.952831113 0.994647084 0.893339823 0.959470194 0.896523919 0.996306594 0.921201912 0.945638049 0.955435024 0.952733962 0.923078035 0.965305852 0.966432066 1.001510105 120402451 cutinase Mycobacterium vanbaalenii PYR-1 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 0.882674214 0.952028905 0.86050709 0.92155452 0.912016425 0.94600015 0.909774369 0.912378748 0.922487549 0.93107303 0.853422522 0.920180691 0.844329602 0.843768174 0.916887117 0.908107478 0.915204056 0.976484433 367041774 rgl Thielavia terrestris NRRL 8126 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Thielavia;species:Thielavia terrestris; 0.832492576 0.834444892 0.797952811 0.784849433 0.843479572 0.82172543 0.837558705 0.781018591 0.838173909 0.86010018 325543141 pme Xanthomonas perforans 91-118 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas perforans; 0.984163757 0.939313701 0.968905284 0.983377041 0.852284791 0.935518642 0.853960479 0.907742301 0.981092278 0.881846949 0.909332257 0.912711855 0.881631286 0.862151004 0.825352063 0.882627845 0.969386724 0.913715565 84778339 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.046212815 1.048944854 1.061158696 1.09839349 1.082219708 1.057873135 1.049894927 1.057415094 1.045206194 1.042854535 1.03732022 1.073551374 1.062146179 1.009273605 1.027634647 1.022640707 1.056009666 1.036253792 149142298 SoxV Roseovarius sp. TM1035 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 0.952459748 0.942905008 0.905517855 0.948070664 0.901656061 0.874116534 0.879697412 0.940540461 0.927857792 0.96840177 0.904239509 0.922032268 0.85714204 0.862921019 0.852879098 0.903764283 0.942869334 0.920490342 111071978 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.82078599 0.869140224 0.836761749 0.825683495 0.823148885 0.937590884 0.830849608 0.869979655 144578352 mg_chelatase Ostreococcus lucimarinus CCE9901 Secondary metabolism Pigments Chlorophyll NA 0.910445333 0.904772902 0.902511711 0.915045195 0.920831058 0.921986603 0.953655559 0.935818754 0.847433496 0.917919284 0.951168905 0.947759596 0.917944296 0.882987507 0.869130865 0.867664637 0.904123381 0.932645996 318042430 b_lactamase Synechococcus sp. CB0101 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 0.821081558 0.861140499 0.826882139 0.858473476 0.839638271 0.829493676 0.851924485 0.836044602 0.836491141 0.829839028 0.852492602 0.896666636 315607104 RgaE Prevotella buccae ATCC 33574 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella buccae; 0.785606867 0.789001121 384090032 mannanase Paenibacillus mucilaginosus K02 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 0.918132852 0.935158506 0.874604538 0.889209035 0.875372561 0.86999293 0.877815805 0.921443709 0.878224286 0.826063055 0.897800412 0.821274556 0.816344292 0.856884428 0.8971288 0.948287684 139478553 mer uncultured alpha proteobacterium Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 1.231433405 1.231075964 1.195219399 1.219783854 1.182087677 1.235803235 1.186996138 1.203744382 1.204680958 1.211693695 1.183246796 1.207288151 1.16665086 1.176307631 1.149243938 1.190595111 1.226436061 1.226109727 121712495 phytase Aspergillus clavatus NRRL 1 Phosphorus Phytic acid hydrolysis NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 0.980478935 0.899484143 0.923588454 0.923298535 0.931657165 0.910767343 0.896984826 0.93986909 0.932926991 0.932884172 0.881267986 0.912136952 0.877641072 0.896656762 0.924631722 0.857438557 0.942369128 0.921770938 114341341 mer Maricaulis maris MCS10 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Maricaulis;species:Maricaulis maris; 0.874157722 0.898061129 0.832850028 0.813530901 0.82155645 0.807898296 0.842317793 0.826819799 161505242 phn "Salmonella enterica subsp. arizonae serovar 62:z4,z23:--" Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 0.955270286 0.93688254 0.94499099 0.980092049 0.938952409 0.948975674 0.980203832 0.987594284 1.00641369 0.898755499 0.905854845 0.931998853 0.780314418 0.844820649 0.770837552 0.867305261 0.865850954 0.903495859 357226553 bphd Marinobacter manganoxydans MnI7-9 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter manganoxydans; 1.160334316 1.133258387 1.141385444 1.163941851 1.102047566 1.149042018 1.121434805 1.147965333 1.137202026 1.150948756 1.123241131 1.15384753 1.136376057 1.124411767 1.173524926 1.094566338 1.176805066 1.141956334 88807729 CsoS2 Synechococcus sp. WH 7805 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 0.790466357 0.827129617 0.814317944 0.834878217 0.915142189 0.871690413 0.861532648 0.839699917 0.884308345 0.97737046 0.920516801 91977888 arsm Rhodopseudomonas palustris BisB5 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 0.767905052 0.821061913 0.814746193 0.794721399 0.809341245 0.825317273 223586061 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.205357084 1.194670396 1.168638243 1.173155737 1.133878465 1.189460666 1.128831704 1.151180631 1.157530419 1.168377744 1.156593934 1.162571939 1.13738264 1.17383236 1.122988849 1.142111489 1.21175502 1.208418176 171990794 amyA Exiguobacterium sibiricum 255-15 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium;species:Exiguobacterium sibiricum; 0.780723929 0.8427808 0.79183097 0.814616045 0.808323442 0.831571747 356658854 chne Rhodococcus opacus PD630 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus opacus; 0.800745803 0.874757405 0.832244502 0.820033774 0.874166423 0.841696633 0.803636258 0.795713719 0.843378634 0.823903574 0.82462603 0.83160772 0.800003017 0.817441047 0.815251612 0.88640437 118468002 cutinase Mycobacterium smegmatis str. MC2 155 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 1.04378984 1.084383773 1.028179613 1.051016372 1.013814897 1.052691843 1.054791341 1.042235676 1.040223114 1.030175129 1.000067182 1.060281884 1.005240979 1.014343046 0.945082089 0.95839538 1.06291876 1.067621373 291446987 pcpb Streptomyces roseosporus NRRL 15998 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces filamentosus; 0.957893654 0.948942696 0.953997407 0.944749724 0.929017423 0.953649693 0.955494669 0.972162814 0.968276113 0.956155802 0.944386703 0.935461002 0.8662224 0.887662293 0.849278297 0.870228746 0.979421791 0.959336853 212703866 dsra Desulfovibrio piger ATCC 29098 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio piger; 1.120338437 1.126997757 1.085926888 1.104165049 1.104750438 1.120756188 1.073050709 1.094312848 1.078521154 1.09248529 1.092942254 1.103594284 1.090918759 1.084626729 1.087543362 1.112798915 1.123269863 1.129584216 389931185 mdla Burkholderia terrae BS001 Organic Remediation Aromatics Aromatic alpha hydroxy acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia terrae; 1.12286654 1.061442286 1.072094018 1.100462248 1.095016732 1.13917103 1.078396886 1.063513406 1.109723877 1.044944136 1.079321215 1.109890116 1.031583167 1.031182476 1.040708272 1.091968527 1.081744271 1.021136764 307946977 fthfs Roseibium sp. TrichSKD4 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseibium; 0.840777248 0.865571192 0.837554639 0.855862008 0.85043013 0.901061182 0.814892587 0.85124591 0.885060479 0.848086716 0.825029922 0.83364097 0.869375495 0.866769441 333482002 alkb Amycolicicoccus subflavus DQS3-9A1 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Amycolicicoccus;species:Amycolicicoccus subflavus; 0.903441271 0.838734435 0.88191683 0.839771248 0.79533724 0.837343471 0.832439568 115402219 endochitinase Aspergillus terreus NIH2624 Carbon Cycling Carbon degradation Chitin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 0.822778231 0.788280335 0.846909208 0.831539285 0.856191386 0.846602567 0.81704485 0.860892791 0.85760539 0.848802852 0.815869069 0.839202535 83590789 atza Moorella thermoacetica ATCC 39073 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Moorella;species:Moorella thermoacetica; 1.293985469 1.274455536 1.276366335 1.28647231 1.273746194 1.316237605 1.290317991 1.297816675 1.274405137 1.260602063 1.271281034 1.249512401 1.285063219 1.250522426 1.226018329 1.245752326 1.296346506 1.263186799 255084890 actin_Viridiplantae Micromonas sp. RCC299 Other Phylogenetic NA superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Mamiellophyceae;order:Mamiellales;genus:Micromonas; 0.932806955 0.944521282 0.92864805 0.978745737 0.934733402 1.025497727 0.916660993 0.864049187 0.933054775 0.977391979 0.963700548 0.946572598 0.9361181 0.965578026 0.961350548 0.958769274 1.000133878 0.945233113 26986207 soxY Pelodictyon phaeoclathratiforme Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Pelodictyon; 1.476868514 1.436234712 1.435358995 1.383990042 1.42765919 1.447540328 1.392337241 1.415365616 1.410951376 1.421050461 1.403758027 1.409144168 1.410561199 1.391975303 1.409029513 1.404131264 1.414776899 1.414594628 290568551 fthfs Stackebrandtia nassauensis DSM 44728 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Glycomycetaceae;genus:Stackebrandtia;species:Stackebrandtia nassauensis; 1.09364086 0.998076589 1.015519961 1.069530267 0.991479995 1.004139618 1.035413718 1.063350785 1.012696902 0.997096666 0.965681223 1.036971047 0.973568255 0.951994549 0.936339535 0.993895858 1.016377953 0.993644873 77969155 vana Burkholderia sp. 383 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 0.898627666 0.957093316 0.938553256 0.852859195 0.91159444 0.920120118 0.901299554 0.88904569 0.932166711 0.861271566 0.862918564 0.903641328 0.828443775 0.870085055 0.842267736 0.839379524 0.931213909 125716454 phenol_oxidase Ensifer adhaerens Carbon Cycling Carbon degradation Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Ensifer; 0.785670805 0.809936017 0.81019824 0.869483903 0.81783488 0.82120715 0.83487894 0.825559056 0.860200952 0.794731674 0.843951283 10175620 arsc Bacillus halodurans C-125 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus halodurans; 0.842063367 0.867449644 0.787810591 0.816337981 0.828589852 0.831629147 0.796552957 0.816937593 0.89695919 0.899315743 0.816453923 0.866884811 0.823818428 0.854340763 154148872 frdA_rTCA Campylobacter hominis ATCC BAA-381 Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter hominis; 0.903987153 0.922151598 0.925001932 0.953249783 0.90602804 0.953213701 0.926217873 0.875356832 0.943389986 0.911575368 0.865157144 0.895679788 0.861299583 0.841586099 0.875750098 0.861671695 0.956034072 0.937430393 332372314 rubisco uncultured bacterium Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria; 0.809248806 0.800705589 0.829809383 0.818972784 0.810635458 0.826366041 0.804753367 0.826115574 0.825129637 0.827148709 110821793 atzd Rhodococcus sp. RHA1 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 0.891725757 0.909993872 0.853993296 0.837779169 0.873182371 0.885736826 0.821745228 0.856575096 0.861599409 0.871496336 0.884306046 0.827793056 0.825215328 0.869700146 0.869429479 323366500 nifh uncultured microorganism Nitrogen Nitrogen fixation NA 0.906471504 0.918632598 0.886507865 0.888850207 0.858799038 0.904042094 0.89067834 0.892484043 0.885122133 0.903104325 0.910123513 0.87746244 0.861686429 0.840388166 0.888675844 196200199 amyA Cyanothece sp. PCC 7822 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 0.763945933 0.78478935 0.797700696 0.846032157 256363045 acetylglucosaminidase Catenulispora acidiphila DSM 44928 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 0.874859855 0.887801114 0.85966879 0.922363933 0.90292662 0.867926182 0.922525563 0.921720046 0.904162424 0.856410613 0.855958749 0.91410573 0.856341051 0.831558479 0.825681505 1.004331534 0.878068767 319438900 tfda uncultured bacterium Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria; 1.031772003 1.052931058 1.01716568 1.03850569 0.973620046 1.040458341 0.959141225 1.057752837 1.026720809 1.0202809 0.965993781 1.019151185 0.914636608 0.993756157 0.905962821 0.984602923 1.002592426 1.058350017 170516856 alkb uncultured bacterium Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria; 0.82434642 0.794325681 196212317 alkk Geobacillus sp. G11MC16 Organic Remediation Others NA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 0.998892805 0.942210899 0.900149171 0.933391833 0.830115073 0.928914195 0.862270587 0.877448421 0.936368441 0.938498323 0.856529329 0.886134537 0.893778192 0.891223953 0.840064382 0.884453918 0.947687436 0.982028017 218781822 acetylglucosaminidase Desulfatibacillum alkenivorans AK-01 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfatibacillum;species:Desulfatibacillum alkenivorans; 1.243634783 1.224559598 1.230994836 1.214580523 1.24028199 1.247674674 1.233437084 1.206358036 1.241863847 1.230771256 1.230393602 1.223810187 1.217503597 1.186396156 1.176951791 1.194135433 1.244899841 1.218770793 197299320 amyA Ruminococcus lactaris ATCC 29176 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus;species:Ruminococcus lactaris; 0.917928055 1.018276512 0.962936551 0.943118824 0.883035608 0.946613984 0.915722792 0.935388383 0.952540603 0.966882885 0.940090409 0.95071837 0.904001776 0.913504259 0.900681339 0.895221052 0.912458847 0.940024 117188449 nitrate_reductase uncultured eukaryote Nitrogen N Assimilation NA superkingdom:Eukaryota; 0.984594556 0.976627617 0.885300355 0.966562604 0.941570606 0.950679617 0.87479722 0.898357496 0.935990959 0.961066844 0.939753929 0.924379991 0.909807116 0.892086925 0.93324613 0.898448989 0.976731599 1.001894396 373956109 amyA Mucilaginibacter paludis DSM 18603 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Mucilaginibacter;species:Mucilaginibacter paludis; 1.060854547 1.057767653 1.015307408 1.101007709 1.010640799 1.056786094 1.004504107 1.038240816 1.029023463 1.034600531 1.00697478 1.031866385 1.003867949 1.021190987 0.995020988 1.049927989 1.071898335 1.035037981 66574689 ara Xanthomonas campestris pv. campestris str. 8004 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas campestris; 0.807905535 0.830649487 0.825362541 0.84205033 0.812874025 0.809316168 0.794290676 0.841853617 0.830512686 345873282 CsoSCA Thiorhodococcus drewsii AZ1 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiorhodococcus;species:Thiorhodococcus drewsii; 1.034705703 1.016722432 1.028501129 1.026578005 1.017208323 0.984965199 0.99069893 1.012332129 1.04086301 1.009399726 1.014129982 1.053865314 0.987801679 1.007128567 1.038147967 1.007724956 1.019362156 0.997285202 288917135 amyA Frankia sp. EUN1f Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 1.106489093 1.008816612 0.986497404 1.023431753 1.001771517 1.064344482 1.043794126 1.031091108 0.9896412 1.056792829 0.972681106 1.023354533 0.992853143 0.988060261 0.919303746 0.989763975 1.018865655 1.031929094 260936539 chitinase Vibrio orientalis CIP 102891 = ATCC 33934 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio orientalis; 1.017640799 1.060654643 1.020459998 1.058529115 1.032417169 1.040273291 1.000524057 1.045032713 1.023093303 1.035687479 1.023469843 1.078394941 1.028090779 0.978351622 1.030761657 1.014010854 1.042377804 0.970781042 26278786 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.874427258 0.854924963 0.837953361 0.899850172 0.792450807 0.815172525 0.827124158 0.84656504 0.81633458 297623672 endoglucanase Truepera radiovictrix DSM 17093 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Trueperaceae;genus:Truepera;species:Truepera radiovictrix; 0.980900066 0.956347846 0.978456175 1.016712951 0.934931735 0.972901435 0.950417684 1.02164013 0.982633476 0.945058446 0.931375961 0.967321106 0.949903299 0.94608918 0.941701859 0.97279277 0.990341471 0.95565585 227069417 narb uncultured archaeon Nitrogen Assimilatory N reduction NA superkingdom:Archaea; 0.921636614 0.951963672 0.937877027 0.934696325 0.957747888 0.932713616 0.927951123 0.921700263 0.905191549 0.934150726 0.915718442 0.940482567 0.942867729 0.90254021 0.914335177 0.909306769 0.931368186 0.960693817 334893067 cysJ Salinisphaera shabanensis E1L3A Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Salinisphaerales;family:Salinisphaeraceae;genus:Salinisphaera;species:Salinisphaera shabanensis; 1.267204994 1.181131781 1.217310652 1.23577272 1.226449628 1.354429402 1.217109072 1.202095579 1.220301777 1.288977501 1.240045649 1.223363073 1.24435498 1.327153568 1.455499333 1.233477577 1.255337313 1.223240375 116013326 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.148407546 1.040724938 1.019897742 1.037152863 0.995773241 1.036683789 0.971874751 0.995925741 1.043709708 0.990343466 0.985248728 1.009451896 1.060752114 0.97773917 1.070674433 0.992287508 1.045612864 1.016056652 378747746 aps_apra uncultured Firmicutes bacterium Sulfur adenylylsulfate reductase NA superkingdom:Bacteria;phylum:Firmicutes; 0.854682745 0.85914801 0.831863026 0.83719519 0.821921885 0.886303842 0.845890783 0.841461593 0.826636439 0.880384823 0.831868596 0.820075857 0.825925678 0.884108497 0.841304169 0.85289534 0.833247847 0.87730687 223586016 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.961058614 0.974055628 0.981530456 0.99653568 0.957655114 0.970939249 1.004531239 0.975199469 0.964238421 0.959179593 0.985632901 0.97346595 0.946185939 0.934182436 0.936084793 0.925419807 0.956515892 0.946328499 257867825 amyA Enterococcus casseliflavus EC30 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Enterococcaceae;genus:Enterococcus;species:Enterococcus casseliflavus; 0.896045101 0.882167217 0.868828411 0.920040596 0.873518433 0.846193954 0.869940683 0.88948754 0.859961811 0.868285169 0.837639919 0.901806754 0.920003594 63003137 one_ring_12diox uncultured soil bacterium Organic Remediation Aromatics Other aromatics superkingdom:Bacteria; 1.319320437 1.27936815 1.223084386 1.223197294 1.274896384 1.308442678 1.240263004 1.23926529 1.269985923 1.216564281 1.241174105 1.236419493 1.259639468 1.201779623 1.231079409 1.231301659 1.23302255 1.274253976 403203261 cmci Gordonia rhizosphera NBRC 16068 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia rhizosphera; 0.95489506 0.937586374 0.95733933 0.938798299 0.928143192 0.984470888 0.950911972 0.939031042 0.96417192 1.009406337 0.908249466 0.913208825 0.943851114 0.972968582 0.950534969 0.957510015 0.949622095 0.999298325 384072827 xyla Halobacillus halophilus DSM 2266 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Halobacillus;species:Halobacillus halophilus; 0.832378692 0.857133607 0.831898565 0.865427112 0.898706101 0.857864163 0.902811024 0.863640564 0.858420078 0.857071216 0.864156858 0.834206471 0.798845479 0.795881062 0.862496457 0.828521631 109452509 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.971258492 0.957245764 1.007699955 0.987057562 1.019249029 1.006693376 1.03182869 0.995227288 0.977974394 1.025166059 1.026569024 0.976208413 0.994806631 0.973833103 0.930629037 0.930225777 0.981524101 0.991899917 299816789 cellobiase Listeria grayi DSM 20601 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Listeriaceae;genus:Listeria;species:Listeria grayi; 0.933142812 0.81271122 0.856308716 0.826488596 0.799116678 0.832230395 0.865558466 0.858601676 0.756272328 0.8189604 28919715 ara Neurospora crassa OR74A Carbon Cycling Carbon degradation Hemicellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Neurospora;species:Neurospora crassa; 0.916963484 0.889210465 0.87353165 0.932472818 0.817569336 0.899976121 0.846730537 0.884521364 0.908095728 0.878854897 0.844993111 0.875697898 0.783461777 0.813868692 0.799980634 0.896988841 0.880725236 28971823 nagg Sphingomonas sp. P2 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 0.996895445 0.99399532 0.968397762 1.037847772 1.016260202 1.002838897 1.013532929 1.019337126 1.025015879 0.990963858 0.986898181 1.018296552 0.946777343 0.91417226 0.928446003 1.000844705 0.983907003 0.95394872 212539978 axe Penicillium marneffei ATCC 18224 Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces marneffei; 0.855480685 0.824590839 0.863456483 0.841608606 0.881318395 0.906586908 0.832163242 0.800140922 0.804366476 0.906946996 0.878749317 0.86867136 0.816803472 0.843272331 0.820910486 0.849865758 0.823039501 91692879 SoxC Burkholderia xenovorans LB400 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 1.005259081 0.941939456 0.972836433 1.006867033 0.967559609 0.925464434 0.991995213 1.009178109 0.985617436 0.938974593 0.928785955 0.933156983 0.896296798 0.875487343 0.903953586 0.921464135 0.959468863 0.969373437 291416905 atza Oribacterium sp. oral taxon 078 str. F0262 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Oribacterium;species:Oribacterium sp. oral taxon 078; 0.983848741 0.861375239 0.941963348 0.938558123 0.882712357 0.881326272 0.84410077 0.902311451 0.917063438 0.916038672 0.949784628 0.923945643 0.90322914 0.919494689 0.903643167 0.903337977 0.921388739 0.885958187 225405370 CsoS1_CcmK Clostridium asparagiforme DSM 15981 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium asparagiforme; 1.195347812 1.165073704 1.194823591 1.161986229 1.121158785 1.153685466 1.087706204 1.132974316 1.166026862 1.148377874 1.160378617 1.157123733 1.131622144 1.111970198 1.10757918 1.133635321 1.17134429 1.143314581 87307590 RgaE Blastopirellula marina DSM 3645 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Blastopirellula;species:Blastopirellula marina; 0.945872722 1.008112425 0.998039989 0.909845683 0.984091107 0.8690012 0.960690233 1.001085422 0.967232902 0.986824243 0.937453179 0.941286198 0.927702696 0.960777811 0.986907506 163262585 cysI Bordetella petrii Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella; 1.176418289 1.16623874 1.15270403 1.1464029 1.11395077 1.186935169 1.11022831 1.180864781 1.128803469 1.176618661 1.130993866 1.15123398 1.08568923 1.158918318 1.102969254 1.125333365 1.164691013 1.191980062 393760576 nosz Alcaligenes faecalis subsp. faecalis NCIB 8687 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Alcaligenes;species:Alcaligenes faecalis; 1.092677554 1.098043066 1.060480554 1.048471855 1.090204336 1.107540403 1.098631627 1.074723534 1.095704694 1.123105855 1.105623403 1.087759703 1.064073731 1.058850678 1.003000102 1.022861418 1.111620375 1.143217865 363416306 GAPDH_Calvin Acidovorax sp. NO-1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 0.898971886 0.929458207 0.857684436 0.943278926 0.831195078 0.917288052 0.897835275 0.890171794 0.896821474 0.899358547 0.870098044 0.890865805 0.864519314 0.866375354 0.877360681 0.896644517 0.939089494 0.922459298 6573214 nitrate_reductase Chlamydomonas reinhardtii Nitrogen N Assimilation NA superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Chlorophyceae;order:Chlamydomonadales;family:Chlamydomonadaceae;genus:Chlamydomonas; 1.091014717 1.104820828 1.084470118 1.083885971 1.082956704 1.11237307 1.090043482 1.094851903 1.065217567 1.102059814 1.091772271 1.093179051 1.082894567 1.097388913 1.0867845 1.097912231 1.103331626 1.106532113 121714210 dehh109 Aspergillus clavatus NRRL 1 Organic Remediation Chlorinated solvents NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 0.93165877 0.974086688 0.916152122 0.95077436 0.912449301 0.95398414 0.893795371 0.904168069 0.930730719 0.927369194 0.893059824 0.905497464 0.920720934 0.91218077 0.852979239 0.876954825 0.970244406 0.953805398 359834822 pcag Actinoplanes sp. SE50/110 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes; 1.251085012 1.264667752 1.238101044 1.255753853 1.255044032 1.282922789 1.245071016 1.230517631 1.225118005 1.243342886 1.256478985 1.266281541 1.242046915 1.247989761 1.24258537 1.271903638 1.263176451 1.244900747 349797346 cysJ Neisseria wadsworthii 9715 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria wadsworthii; 0.98530649 1.007660389 0.987605883 0.999377135 0.974626367 1.009148623 0.924259052 0.957534952 0.967670761 0.936687303 0.927255053 0.941637139 0.96552246 0.935011531 0.909072123 0.917402063 1.007671559 1.008061841 227342473 xyla Rhizobium sp. NGR234 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium fredii; 0.908169197 0.919272591 0.990790468 0.933080751 0.942876218 0.889010361 0.889548672 0.90031656 0.898927839 0.883561958 0.879202505 0.935123329 0.884059807 0.884593331 0.859444142 0.864488426 0.929284012 0.898527551 108765835 badh Rubrobacter xylanophilus DSM 9941 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Rubrobacterales;family:Rubrobacteraceae;genus:Rubrobacter;species:Rubrobacter xylanophilus; 1.017033913 1.064614993 1.01867738 1.055518284 0.998689779 0.977440212 0.959435086 0.975875426 1.000647846 0.966580851 0.963594543 1.01513255 0.976161563 0.956750818 0.918138762 0.963190987 1.046123747 0.999310159 82946635 PRK Magnetospirillum magneticum AMB-1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum magneticum; 0.81397556 0.813658574 0.786051407 0.857521131 126434012 catechol Mycobacterium sp. JLS Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 0.807958689 0.87630083 0.890578134 0.834058689 0.878897281 0.821163794 0.851064886 0.832667792 0.831709807 0.809799545 0.849169331 0.848418458 0.811955502 0.834765064 0.843760615 0.857451307 3157686 nifh unidentified nitrogen-fixing bacteria Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.828747766 0.822373391 1.100872852 0.801247448 39651084 nitrilase Rhodopseudomonas palustris CGA009 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 0.768428212 0.828662626 116197198 tannase_Cdeg Chaetomium globosum CBS 148.51 Carbon Cycling Carbon degradation Tannins superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 0.921253345 0.864622523 0.836967983 0.923248741 0.814884934 0.882659985 0.86763427 0.909629214 0.90597235 0.873061775 0.815701909 0.854329343 0.88987044 0.858353468 109897169 xylanase Pseudoalteromonas atlantica T6c Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas atlantica; 0.939074423 0.885628319 0.956045551 0.972729393 0.924989615 0.891139819 0.907147787 0.919554083 0.970162666 0.951822443 0.892673395 0.976601104 0.940000589 0.90203591 0.923692631 0.903599594 0.923634885 0.932223788 332039287 GAPDH_Calvin Hylemonella gracilis ATCC 19624 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Hylemonella;species:Hylemonella gracilis; 0.892696019 0.882768943 0.812584325 0.842346827 0.867848556 0.863818654 0.810606392 0.91209813 78102121 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.816065907 0.784307648 365804439 amyA Streptomyces cattleya NRRL 8057 = DSM 46488 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces cattleya; 1.502042933 1.465041156 1.458172097 1.470329287 1.451638358 1.499363494 1.454982395 1.464869432 1.437712061 1.444955256 1.451727475 1.444532665 1.420950332 1.402397002 1.428357382 1.423859581 1.485279102 1.446934468 156043229 glucoamylase Sclerotinia sclerotiorum 1980 Carbon Cycling Carbon degradation Starch superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Sclerotinia;species:Sclerotinia sclerotiorum; 0.817398339 0.894540505 0.790787105 0.934369673 0.859382106 0.852938434 0.940109821 0.966723196 0.860457983 332981939 ppx Mahella australiensis 50-1 BON Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacterales Family IV. Incertae Sedis;genus:Mahella;species:Mahella australiensis; 1.350916688 1.338061915 1.326393865 1.320173761 1.334964902 1.397180738 1.314295885 1.321514236 1.32720226 1.340595256 1.312430388 1.301560337 1.311262429 1.311998543 1.295855705 1.323166479 1.344875402 1.337427794 89054191 tktA Jannaschia sp. CCS1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Jannaschia; 1.111118397 1.033601955 1.061295459 1.09201362 1.050251285 1.048879972 1.033643278 1.046486066 1.052614681 1.000710846 0.998209017 1.050595235 0.998130511 0.966762828 0.992989749 1.015069508 1.057460343 1.026742746 108802218 nhh Mycobacterium sp. MCS Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 0.866779795 0.944556743 0.885519258 0.912460129 0.899865926 0.914561689 0.822449799 0.829634835 0.848928658 0.850669148 0.802090698 0.869759599 0.822140301 0.82552995 0.871361745 0.932777615 188485515 nifh uncultured microorganism Nitrogen Nitrogen fixation NA 0.756371329 0.811460218 260767132 Sir Vibrio furnissii CIP 102972 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio furnissii; 0.947608668 0.941182202 0.978083769 0.994380792 0.95366214 0.924615476 0.998063019 1.019573227 0.993573977 0.945274295 0.91095775 0.968254859 0.918918393 0.88576869 0.87601041 0.926998438 0.966319474 0.947842437 421953064 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.862305078 0.876013218 0.896030835 0.886554317 0.792223921 0.858424542 0.855043088 0.880947664 0.914224393 0.916481484 0.872144344 0.882356509 0.818971137 0.817710044 0.902896848 0.903731157 372272125 mhpb Marinobacterium stanieri S30 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacterium;species:Marinobacterium stanieri; 0.938447351 0.953941694 0.915758173 0.963594685 0.919905226 0.960418911 0.914297036 0.91283742 0.976901131 0.925470423 0.912838715 0.957314915 0.909626557 0.915280189 0.961093762 0.922294516 1.008628336 0.977679342 322436284 RgaE Granulicella tundricola Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Granulicella; 1.00709099 0.994882951 0.970872292 1.010590036 0.95720342 0.987525106 0.946660522 0.990213049 1.008733149 0.973335923 0.964122287 0.987685772 0.920603076 0.955322778 0.921559308 0.951499117 1.000306866 0.981889293 376372758 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.122784699 1.103297015 1.064359177 1.132632123 1.051756101 1.103731787 1.101350538 1.113776306 1.093762862 1.087869976 1.051811374 1.122732157 1.063337911 1.054034623 1.056404916 1.055012924 1.124529782 1.089212332 33640918 CsoS1_CcmK Prochlorococcus marinus str. MIT 9313 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Cyanobacteria;order:Prochlorales;family:Prochlorococcaceae;genus:Prochlorococcus;species:Prochlorococcus marinus; 0.807526277 0.790490559 0.819970899 0.813466467 0.786242747 0.82407058 0.847402694 0.846533309 0.835124572 0.782966125 0.785366067 0.836201264 302443005 amyA Streptomyces sp. C Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 0.804427984 0.911080349 0.874571674 0.860523893 0.871916792 0.832636033 0.777869171 0.842163704 0.819357826 0.829010995 0.844510587 0.818375899 0.858067088 0.934720437 311108592 SoxC Achromobacter xylosoxidans A8 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter;species:Achromobacter xylosoxidans; 1.030721305 1.006308678 0.98658001 0.987203444 1.025857998 1.008147528 1.017774734 0.993684404 1.025998347 1.021187302 1.027957389 1.026544184 0.966337633 0.971303599 0.927749768 0.957565737 1.028284373 1.071502082 146192107 CsoSCA Bradyrhizobium sp. ORS 278 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.936710539 0.919549147 0.844880439 0.941445792 0.863464659 0.907209312 0.869347657 0.910024586 0.917538733 0.91782965 0.838788696 0.891868708 0.808313369 0.87290688 0.821788204 0.862496211 0.892173015 0.928358836 387889307 mhpb Escherichia blattae DSM 4481 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Shimwellia;species:Shimwellia blattae; 0.99841505 0.815901319 0.804646358 0.779848988 0.808023473 0.786115361 225075558 ppk Neisseria flavescens NRL30031/H210 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria flavescens; 1.316360503 1.276066658 1.301979007 1.303244769 1.319522742 1.345756266 1.308928961 1.309572793 1.282715377 1.314703908 1.323449948 1.303951341 1.293089564 1.290703887 1.30354124 1.295129813 1.307299637 1.303389192 94496157 RgaE Sphingomonas sp. SKA58 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 0.817093792 0.868873457 0.843764392 0.848010786 0.885614476 0.822850816 0.821939928 0.824561224 0.859474932 0.935607391 0.834188229 0.894718481 315447245 amyA Ruminococcus albus 7 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus;species:Ruminococcus albus; 0.769526481 0.891615319 0.774701183 0.942401978 0.913623276 0.9331084 0.767783744 0.936024378 0.914837412 0.872712274 0.949617711 0.84196 94471271 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.331766951 1.299081163 1.283091223 1.275014496 1.273214799 1.320270189 1.276277976 1.267258284 1.271054252 1.30297012 1.277662103 1.267975248 1.231315628 1.248119869 1.21632324 1.262266464 1.308306219 1.295297068 212171444 alkb Alcanivorax sp. S15-9 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax; 1.014618888 1.006304061 1.003606035 0.994409421 0.938453824 0.980837422 0.930024498 0.949560374 0.99833539 1.000375566 0.989664316 0.952677493 0.942443426 1.032646893 0.906663747 0.959170908 1.015200823 1.001650221 162707953 catechol uncultured bacterium Organic Remediation Aromatics Other aromatics superkingdom:Bacteria; 1.120037414 1.076909014 1.077902606 1.096358997 1.051873222 1.081994013 1.064813454 1.068555295 1.090013969 1.050837779 1.064286621 1.092496109 1.054686539 1.040574743 1.045433373 1.05517886 1.102213978 1.062285608 325948635 acetylglucosaminidase Nocardioidaceae bacterium Broad-1 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae; 0.903149211 0.93423694 0.913616786 0.886324025 0.920244934 0.921601899 0.870471265 0.853191223 0.919632171 0.93552073 0.870538427 0.856022931 0.871442061 0.842119864 0.871137985 0.948026804 0.927902423 209548034 ppx Rhizobium leguminosarum bv. trifolii WSM2304 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 1.081538876 1.074759285 1.100468614 1.094448377 1.045986148 1.079530554 1.050965483 1.077795729 1.082053992 1.109554188 1.064053274 1.110781755 1.037266892 1.067479732 1.044671546 1.074406136 1.09236773 1.081216337 89051279 endochitinase Photobacterium sp. SKA34 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium; 0.771602858 0.891042628 0.802779772 0.809313913 407780829 nhh Oceanibaculum indicum P24 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Oceanibaculum;species:Oceanibaculum indicum; 1.199255614 1.22997996 1.168003007 1.192614841 1.193669894 1.238661259 1.1739238 1.184093184 1.150235453 1.206743169 1.175283344 1.188650386 1.170181549 1.157148432 1.151756707 1.189679338 1.220776226 1.181568902 340534500 terc Corynebacterium variabile DSM 44702 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium variabile; 0.840675219 0.856152499 0.939905344 0.911056413 0.884632628 0.895396881 0.906046383 0.878736904 0.867339009 0.882589824 0.895130568 0.898886383 0.844560542 0.86023531 0.856871557 0.82354567 0.859763566 0.895294951 374578414 phn Bradyrhizobium sp. WSM471 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.80670377 0.840618705 0.826574165 0.846316729 0.865531915 0.900143242 0.858353176 0.831526292 0.866231188 359424660 alkb Gordonia amarae NBRC 15530 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia amarae; 0.997292176 0.997807267 0.964395545 0.970034458 0.957596856 0.98527677 0.941606011 0.940033532 0.972075485 0.971099803 0.95725357 0.971190801 0.934720892 0.936346471 0.905987995 0.919442042 0.98136905 1.001004735 164511893 b_lactamase Pseudomonas aeruginosa Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.992809664 0.982087443 0.98258006 0.987981314 0.944042557 0.959445193 0.969706413 0.968356821 1.000828576 1.014499732 0.975390139 1.030579282 0.942122018 0.961690537 0.939631842 0.94553678 0.993266608 0.970498824 356698017 fthfs Clostridium hathewayi WAL-18680 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hathewayi; 0.758639032 0.839253751 0.829236128 0.809770223 0.826341599 0.839965603 227378474 ara Kribbella flavida DSM 17836 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Kribbella;species:Kribbella flavida; 0.96597558 1.162479142 0.919252519 0.843375107 0.923438854 0.797718433 0.839843274 0.818884844 0.835736139 0.795451784 0.828948137 0.816023354 395762917 nitro Janthinobacterium sp. PAMC 25724 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Janthinobacterium;species:Janthinobacterium lividum; 0.788812006 0.801976871 0.785188765 0.849312499 302695935 axe Schizophyllum commune H4-8 Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 0.812704391 0.860162659 0.798675994 0.835557671 0.834130607 0.877313864 205375151 dehh109 Bacillus coahuilensis m4-4 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus coahuilensis; 0.841324881 0.823775762 0.840490762 0.804607824 45386201 narg unidentified bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.80806357 0.852595548 0.818246882 0.763888072 0.806979561 0.839648368 224943072 ppx Eikenella corrodens ATCC 23834 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Eikenella;species:Eikenella corrodens; 1.136433047 1.096064091 1.112918976 1.149462843 1.057477038 1.126058797 1.075193268 1.092947539 1.140486627 1.087641959 1.126780629 1.098155567 1.09523314 1.082732368 1.039222937 1.065597493 1.114666714 1.088613765 335424084 rubisco Salinisphaera shabanensis E1L3A Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Salinisphaerales;family:Salinisphaeraceae;genus:Salinisphaera;species:Salinisphaera shabanensis; 0.957439335 1.001640228 0.955768899 0.966639431 0.945223573 0.969229003 0.924125759 0.94424435 0.953053166 0.974401957 0.96454117 0.971036977 0.951035306 0.963145463 0.898415375 0.9492009 0.99555915 0.999647637 146232579 ppx Dichelobacter nodosus VCS1703A Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Cardiobacteriales;family:Cardiobacteriaceae;genus:Dichelobacter;species:Dichelobacter nodosus; 0.918804221 0.906206118 0.920697815 0.90464774 0.907368977 0.904987793 0.890708627 0.894663205 0.867004415 0.920883148 0.927271824 0.8749493 0.906251943 0.885905752 0.885097916 0.929388463 0.923010308 0.926935515 358242541 cysJ Gordonia araii NBRC 100433 Sulfur Reduction NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia araii; 1.222376832 1.206848606 1.197789389 1.196856135 1.180469239 1.226874539 1.189036692 1.197548158 1.184367578 1.202218708 1.248361779 1.200776004 1.17864931 1.158492905 1.161733734 1.19161056 1.186882703 1.218020728 307770579 ben_bcla Roseibium sp. TrichSKD4 virulence NA NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseibium; 1.269852173 1.283301981 1.249428909 1.283777603 1.302514863 1.308611848 1.243951756 1.237237835 1.270032548 1.251305299 1.27349186 1.328746178 1.253841861 1.172310973 1.166507826 1.211119484 1.288623376 1.204553509 221069363 ben_bcla Comamonas testosteroni KF-1 virulence NA NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 0.823386295 0.819075984 0.796958234 0.822916165 0.828151756 0.838462078 0.823876319 0.832730618 111017537 bphF1 Rhodococcus sp. RHA1 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 0.919135266 0.906645872 0.907085793 0.856970601 0.853871319 0.880477232 0.88162061 0.856395566 0.850445369 0.935402891 0.903061583 0.879376907 0.86667535 0.93349298 1.035505115 0.871017544 0.921407165 1.012025739 157101502 mdh Campylobacter concisus 13826 Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter concisus; 0.973937418 0.947034059 0.850748482 0.936413052 0.9116891 0.879252959 0.907168975 0.86112434 0.843055581 0.84440236 0.792710237 0.875033336 0.885567651 0.832564573 0.900706131 0.895911879 0.915879715 0.908822907 302550562 pectinase (pectate_lyase) Streptomyces viridochromogenes DSM 40736 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces viridochromogenes; 0.784308071 0.809323004 302549732 cmci Streptomyces viridochromogenes DSM 40736 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces viridochromogenes; 0.980343178 0.953105222 0.942542059 0.973336953 0.857531071 0.990270759 0.88270078 0.937089041 0.967889867 0.967108861 0.881235768 0.953026415 0.839718903 0.921928337 0.902951624 0.933900465 0.973896333 1.011052769 118462569 cdh Mycobacterium avium 104 Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 1.412279133 1.38474305 1.345003819 1.369119713 1.377862393 1.411852575 1.334902395 1.338573903 1.341824616 1.361583386 1.350008248 1.370931957 1.358813396 1.336243793 1.342150677 1.348143975 1.35678803 1.356901442 170933874 por_DiC4HB Thermoproteus neutrophilus V24Sta Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum neutrophilum; 1.524155769 1.486644971 1.479375308 1.469051102 1.457488938 1.512356693 1.476039949 1.471969964 1.444173051 1.443105469 1.46072908 1.464459076 1.441235423 1.443758571 1.444316258 1.477338994 1.480595736 1.449482259 334130996 msmabcd Methyloversatilis universalis FAM5 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Methyloversatilis;species:Methyloversatilis universalis; 0.956917059 0.989077894 0.951216627 0.997200116 0.965367407 0.909321543 0.964754174 0.971689572 0.974414697 0.957667454 0.934362207 0.981473884 0.947163138 0.881449782 0.880608443 0.938335343 0.97620459 0.962475315 224817502 APS_AprB Thioalkalivibrio sp. K90mix Sulfur adenylylsulfate reductase NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio; 1.136030073 1.151395097 1.125125297 1.142140952 1.123595816 1.16490991 1.124080598 1.129642904 1.121780819 1.125449425 1.096977335 1.140135079 1.073005208 1.101660478 1.059807227 1.087876599 1.121410479 1.117372063 109454943 soxY Roseobacter denitrificans OCh 114 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter denitrificans; 0.763647338 0.825758933 0.805642354 0.839123953 0.844155047 0.832507758 0.783856202 0.785344076 0.823570576 364566877 ppx Yokenella regensburgei ATCC 43003 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yokenella;species:Yokenella regensburgei; 1.030977084 1.006008087 1.055494209 1.066827374 1.061849796 1.08238699 1.064039476 1.074590256 1.015333028 1.065896019 1.05180491 1.054445475 1.036073736 1.016825639 0.961330349 0.969100575 1.02487184 1.052467035 91790992 mdla Polaromonas sp. JS666 Organic Remediation Aromatics Aromatic alpha hydroxy acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 1.032974102 1.094591565 1.034271681 1.173340875 1.007578145 1.030398227 1.033428785 1.054164165 1.020352121 1.028642077 1.030466344 1.214608094 1.019231395 1.031452112 1.004597896 1.023841848 1.038476165 1.04190214 182415898 pme Opitutus terrae PB90-1 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 0.921201737 0.9456114 0.937028393 0.956951429 0.921605135 0.940023607 0.918705362 0.914099434 0.930881632 0.908509259 0.900998739 0.945334932 0.940717587 0.901398601 0.937129276 0.894036404 0.951550384 0.962247261 313105090 dsrB uncultured prokaryote Sulfur sulfite reduction NA 0.969218208 0.959717112 0.844326328 0.869921248 0.902137653 0.893181421 0.851335048 0.867352041 0.919823742 0.900829794 0.845524879 0.912921306 0.88122084 0.882156314 0.841951238 0.843314857 0.917786215 0.983902066 29466008 norb uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.112171541 1.075280291 1.056789668 1.039316318 1.024478891 1.068555238 0.976128166 1.029767264 1.067424336 1.047246648 1.016387142 1.066606966 1.031227549 1.025039105 0.97244564 1.033353121 1.085062574 1.053198422 365921717 amyA Cardiobacterium valvarum F0432 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Cardiobacteriales;family:Cardiobacteriaceae;genus:Cardiobacterium;species:Cardiobacterium valvarum; 1.017317575 1.051065811 0.975784521 1.033419308 1.009594044 1.024677339 0.904843813 0.949182417 0.968080615 0.959523193 0.971560166 0.974844074 0.982458862 0.955066703 0.992958741 0.94025026 1.021075357 1.059132378 144901049 urec Magnetospirillum gryphiswaldense MSR-1 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum gryphiswaldense; 0.88924705 0.827709188 0.822187562 0.883404663 0.84780677 0.840511934 0.85669651 0.874532014 0.85076533 0.826887619 0.870637551 0.886770123 0.821712652 219550472 endochitinase Vibrio parahaemolyticus 16 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 1.526537314 1.453826812 1.489321572 1.490205715 1.511645986 1.461396835 1.450557139 1.479831585 1.492716827 1.46889172 1.498424995 1.567781003 1.453381385 1.404971511 1.509218222 1.45441729 1.520152565 1.424757528 328940965 pula Paenibacillus sp. HGF5 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 0.81379013 0.928180984 0.779536528 0.826459021 0.959265925 0.817514459 0.814736328 0.898360529 0.824356735 0.791544932 0.904610564 0.921255492 1.058649584 0.904867158 0.995368894 0.962456621 111618054 ppx Acidovorax avenae subsp. citrulli AAC00-1 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax citrulli; 0.874788674 0.809129716 0.848175458 0.831415968 1.003439567 0.875164433 0.848267703 0.879184905 313895321 nifh Selenomonas sp. oral taxon 137 str. F0430 Nitrogen Nitrogen fixation NA superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas sp. oral taxon 137; 1.499324018 1.442648426 1.455887485 1.453846067 1.421206543 1.441957562 1.408255563 1.447725408 1.44647774 1.436698404 1.417574894 1.462870408 1.42903689 1.403752551 1.409245359 1.430021434 1.440278391 1.429294227 334564828 urec Corynebacterium bovis DSM 20582 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium bovis; 0.823087056 0.822800843 0.801971859 0.810956222 0.866522747 0.837000948 0.792738301 0.799971321 0.801882216 0.791975213 0.875907632 0.856173889 27353702 tktA Bradyrhizobium japonicum USDA 110 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium diazoefficiens; 0.795575002 0.804519322 0.813485057 0.831276511 114540082 tktA Fulvimarina pelagi HTCC2506 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Fulvimarina;species:Fulvimarina pelagi; 1.001528539 0.997002285 0.991695777 1.044721009 0.977520862 1.009335644 0.968172412 0.977271309 0.980568389 0.983015073 0.954274926 1.011449647 0.989730999 0.954084604 0.955921636 0.98735458 1.011666756 0.998024483 177841462 Sir Opitutus terrae PB90-1 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 1.430641011 1.434438432 1.418968276 1.424961984 1.395464677 1.447376922 1.37832939 1.391345236 1.401314563 1.380154786 1.382373654 1.39377026 1.389578326 1.350881743 1.370025986 1.387137575 1.462449126 1.400411809 78358312 CsoS1_CcmK Desulfovibrio alaskensis G20 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio alaskensis; 0.811809792 0.838028245 0.847536096 0.80060787 0.83307802 0.827596806 0.805381176 281298851 amyA Prevotella buccalis ATCC 35310 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella buccalis; 1.032713997 1.042008889 1.016213174 1.030143186 0.987022881 1.038524374 0.997791714 0.9705685 1.012392996 1.052709566 1.02899613 1.044695528 0.992137666 1.006366561 0.953125727 0.962601801 1.031197094 1.030779317 46520033 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.87675751 0.878319791 0.888357611 0.832061989 0.936098566 0.924196745 0.899124944 0.87429317 0.921692236 0.915754387 0.881706543 0.891445157 0.880141517 0.886221041 0.808507975 0.87531558 0.951106565 0.961149139 209504514 ara Burkholderia sp. H160 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 1.162060079 1.116164687 1.116345911 1.088727868 1.113946459 1.147735602 1.044574775 1.085854358 1.047146803 1.120504457 1.049449447 1.073599681 1.096449218 1.075680518 1.147416407 1.073240592 1.112475354 1.148583078 381372402 chitinase Actinoplanes missouriensis 431 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes;species:Actinoplanes missouriensis; 1.047234807 1.074104802 1.055197875 1.039877256 0.98599747 1.046622041 1.005022938 1.037455527 1.051031766 1.055966339 0.984790105 1.037449753 1.008515217 1.021506796 0.947894128 0.997585945 1.045181333 1.07445446 342859675 cutinase Mycobacterium colombiense CECT 3035 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium colombiense; 1.088090343 1.052534273 1.05547359 1.029787611 1.022957533 1.074960786 1.022169584 1.084036788 1.07148248 1.055264074 1.047917737 1.035321074 1.01311559 0.978637381 0.95280021 1.001364054 1.05742583 1.054891743 347819363 urec Verminephrobacter aporrectodeae subsp. tuberculatae At4 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter aporrectodeae; 0.865416927 0.886024663 0.82093036 0.922479521 0.841962918 0.866040453 0.841769592 0.819678492 0.848173761 0.852577101 0.873918768 0.824854286 0.827501761 0.833435177 0.872425541 0.90121032 119485504 axe Neosartorya fischeri NRRL 181 Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 0.855401501 0.816723899 0.917963991 0.835237113 0.812994479 0.818302004 0.801941177 0.901463837 0.840202843 282878035 fthfs Prevotella buccalis ATCC 35310 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella buccalis; 0.827273194 0.816230107 0.938486834 0.888446265 0.888208219 0.821378876 0.841006212 0.834567729 0.968792726 0.877381184 0.817497936 0.782487839 26278728 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.786493359 0.804329265 164456044 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 0.878547407 0.880454184 0.893784975 0.932262793 0.842469556 0.978411678 0.8500756 0.806355491 0.877847441 0.900880347 0.940343446 0.928920987 0.870013056 0.894273974 0.903451679 0.923461076 63081872 nosz unidentified bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.993018674 1.00603668 0.966111707 1.000005976 0.987678578 0.999160967 0.949345077 0.993143812 0.966901627 0.979558019 0.950110947 0.981411391 0.970905711 0.945421196 0.922852321 0.972713111 1.035661061 1.007726463 340528433 acetylglucosaminidase Amycolatopsis mediterranei S699 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 1.539646765 1.496158508 1.477820856 1.478970576 1.446816696 1.518127793 1.456283303 1.469846277 1.466146583 1.467268021 1.457463299 1.456632056 1.429622973 1.459684959 1.427329852 1.470803261 1.510269297 1.474868645 189198832 rgl Pyrenophora tritici-repentis Pt-1C-BFP Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 0.92348919 0.86647757 0.880121343 0.888075152 0.905629354 0.810841812 0.865663671 0.867297529 0.937391449 0.842937041 0.86115938 0.894894498 0.865388365 0.83210377 0.929323531 0.86669967 154157406 b_lactamase Parvibaculum lavamentivorans DS-1 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhodobiaceae;genus:Parvibaculum;species:Parvibaculum lavamentivorans; 1.046199581 0.970242942 0.966342403 1.022512836 0.912488041 0.957056822 0.920125719 0.978503363 1.007898931 0.945406374 0.918360183 0.986988156 0.881275114 0.914875663 0.853775833 0.925620971 0.98716013 0.985450713 74420896 TIM Nitrobacter winogradskyi Nb-255 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter winogradskyi; 0.780754093 0.825763623 260218053 ppk Cronobacter turicensis z3032 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Cronobacter;species:Cronobacter turicensis; 0.812917135 0.790157859 74053782 one_ring_23diox uncultured bacterium Organic Remediation Aromatics Other aromatics superkingdom:Bacteria; 1.165206173 1.149604096 1.171708256 1.147409919 1.117194819 1.197557207 1.116004481 1.203510808 1.14756565 1.133151809 1.158169195 1.149093763 1.118149697 1.123445574 1.104680434 1.121149399 1.162926681 1.136963543 323502060 bphF1 Clostridium symbiosum WAL-14673 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium symbiosum; 0.861818542 0.862621471 0.876582894 0.781528844 0.837542585 0.801820235 0.889990209 0.82503256 0.808652147 0.812086098 0.93380784 387860834 nahf Pseudomonas sp. C6 (2012) Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.805615334 0.930314643 379719045 urec Paenibacillus mucilaginosus 3016 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 0.768921323 0.86652558 0.833325898 0.833598432 0.864836805 0.831126663 0.844151581 0.834219742 0.822375869 0.855965134 0.802119162 0.882792418 0.85180503 0.831060233 0.835921249 0.855528542 0.879811255 0.896364692 392844327 badh Rhizobium leguminosarum bv. viciae USDA 2370 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 1.152700984 1.169279339 1.156033489 1.164525817 1.163508526 1.169686061 1.122262163 1.212840971 1.13930572 1.137145218 1.17070419 1.178273915 1.184799481 1.141607248 1.160301976 1.16098918 1.188109305 1.141124377 37900180 rubisco Synechococcus sp. OH2 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 0.820945634 0.957599288 0.833126489 0.821988869 0.818922257 0.811124522 0.830295683 0.84517525 0.847207417 139478509 mer uncultured soil bacterium Metal Homeostasis Mercury Detoxification superkingdom:Bacteria; 0.860433305 0.810492049 0.835822601 0.885321814 0.857054529 0.87989372 0.850938791 0.79519401 0.878461035 0.798667236 0.8137283 0.815675616 0.843542154 0.853596445 0.899866009 405555067 cpna Cecembia lonarensis LW9 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cyclobacteriaceae;genus:Cecembia;species:Cecembia lonarensis; 0.959621955 0.906693254 0.96490922 0.923800227 0.975417598 0.925693424 0.953505227 0.928827154 0.940215757 0.920449311 0.904980167 0.891929239 0.91149749 0.902305819 0.845371928 0.893613346 0.90445254 0.925329517 86557794 ccmM Synechococcus sp. JA-2-3B'a(2-13) Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 1.117238047 1.15639877 1.089070351 1.149366682 1.135163373 1.156447943 1.149487083 1.117520614 1.117217673 1.14384211 1.174336949 1.159436373 1.113789494 1.087339991 1.159376412 1.094905046 1.151011293 1.127079178 299132735 dehh109 Afipia sp. 1NLS2 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Afipia; 1.350358568 1.348884487 1.341296756 1.375607612 1.363363663 1.356149599 1.352278279 1.392125259 1.346289171 1.330032973 1.346370746 1.368750262 1.336309917 1.316931856 1.357966338 1.335323534 1.353258177 1.305660112 254447423 FBP_aldolase gamma proteobacterium HTCC5015 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 0.833646051 0.870524078 0.890563661 0.885030876 0.90608386 1.008351327 0.863562338 0.960254919 0.824136721 0.997387492 0.948470501 0.899663673 0.958016621 0.965158739 0.906485267 0.933918021 0.991604462 0.954025967 119466975 p450aro Neosartorya fischeri NRRL 181 Organic Remediation Aromatics polycyclic aromatics superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 0.880752577 0.881090912 0.900116887 0.89643257 0.913420555 0.902949677 0.917927898 0.889174345 0.885395232 0.886105484 0.822738368 0.869349864 0.818281666 0.861352129 0.897064051 0.876291783 0.926367654 336295939 amyA Paenibacillus mucilaginosus KNP414 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 0.848089425 0.816960035 0.811482715 0.942118366 0.785234823 209907898 dmsa Enterobacter cancerogenus ATCC 35316 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter cancerogenus; 1.078913044 1.06565106 1.039139638 1.025707541 1.010995505 1.059395693 1.012335376 1.027732651 1.030065674 1.025884839 1.069945948 1.014080904 1.027028442 0.989903206 1.003589176 0.976452137 1.032199844 1.037570919 160917418 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.918868613 0.904658947 0.954034171 0.935259084 0.933588993 0.975144047 0.909130531 0.889081063 0.887956908 0.937585524 0.868811206 0.917455245 0.868187862 0.928997845 0.87334217 0.993030914 0.934148965 82571043 ara Bifidobacterium longum Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium; 0.816234629 0.80621968 0.785623704 0.805294846 34582632 exoglucanase Trichoderma viride Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Hypocreaceae;genus:Hypocrea; 1.386735948 1.387431021 1.365992886 1.388436751 1.348574013 1.364064169 1.35560347 1.37848248 1.342477874 1.330624074 1.352060847 1.37160361 1.323776921 1.31912274 1.329210134 1.344802599 1.359982415 1.333812716 158316512 mhpa Frankia sp. EAN1pec Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 1.12514216 1.126390818 1.121637718 1.135407845 1.105312859 1.165508411 1.093395243 1.099513646 1.113483595 1.108097613 1.115612668 1.108940129 1.089734045 1.116942313 1.083692802 1.097378507 1.130877507 1.133723644 139003422 nifh uncultured nitrogen-fixing bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 1.142869991 1.20426808 1.18218819 1.157729352 1.215555678 1.312445271 1.101071879 1.042206223 1.111231122 1.178818982 1.311842952 1.211063472 1.078268074 1.056763298 0.998824404 1.186321204 1.279689511 1.113282123 89113925 glx Phanerochaete chrysosporium Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Corticiales;family:Corticiaceae;genus:Phanerochaete; 1.212821551 1.1819697 1.194470324 1.148167807 1.166103863 1.1891554 1.099433594 1.133442085 1.158301319 1.179066541 1.163297288 1.182606152 1.181340532 1.184393503 1.162490182 1.174587635 1.183566901 1.214225899 133910474 atzb Saccharopolyspora erythraea NRRL 2338 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 0.958966122 1.020603827 0.887507098 0.949850258 0.8986638 0.888938751 0.885846771 0.903015974 0.952600256 0.966193091 0.897375111 0.946993349 0.84233896 0.915880981 0.818070666 0.94075549 0.945888038 0.957913532 220723824 pme_Cdeg Postia placenta Mad-698-R Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Postia;species:Postia placenta; 0.884022701 0.92802392 0.900561746 0.911130026 0.90726609 0.919063554 0.854874913 0.880724018 0.900648502 0.889958567 0.878601317 0.871675855 0.889555843 0.875344085 0.87268388 0.879804699 0.91807353 0.93082889 399534463 mhpa Amycolatopsis mediterranei S699 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 0.930036537 0.934560984 0.895162072 0.918272642 0.884150575 0.888257009 0.860424297 0.867326069 0.807155859 0.865999024 0.867343426 0.936470956 0.886092376 339498729 pula Spirochaeta caldaria DSM 7334 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema caldaria; 1.243202145 1.141815826 1.127642241 1.123401429 1.245185439 1.188716779 1.132312763 1.150576707 1.158218707 1.139955547 1.179287606 1.190190179 1.132425251 1.105140084 1.154777629 1.145731678 1.132392181 1.140366251 283481909 mcra uncultured methanogenic archaeon Carbon Cycling Methane Methanogenesis superkingdom:Archaea;phylum:Euryarchaeota; 1.02078342 1.042241785 0.995053998 1.021011706 1.023577678 1.073841088 1.039816838 1.017800684 0.986888855 1.017907161 0.988148419 1.033332794 0.973897936 0.969026959 0.938895362 0.983634269 1.024739385 1.050275643 157284130 napa Sulfurimonas paralvinella Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Sulfurimonas; 0.83937181 0.896889803 0.826458538 0.872840792 0.84332959 0.92030613 0.851455833 0.845972173 0.855536814 0.885616558 0.81373828 0.844264881 0.843995285 0.865750007 0.859617557 0.803101831 0.902623034 0.860632008 312200115 ppx Frankia sp. EuI1c Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 0.881729735 0.890500037 0.929492959 0.956310043 0.909003305 0.897916739 0.933147872 0.950259725 0.906583839 0.869562103 0.933331452 0.886023539 0.836973437 0.823464492 0.809990272 0.892196582 0.918131377 50541861 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.786857729 0.786071527 0.81565164 0.82703287 38427032 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.928319551 0.905999558 0.99566082 0.924897636 0.964975987 0.979583191 0.891555234 0.928700344 0.947655086 0.910962013 0.989017692 0.956789583 0.929285632 0.90616934 1.022666746 0.926939912 0.953575212 1.034756381 254500307 nifh Labrenzia alexandrii DFL-11 Nitrogen Nitrogen fixation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia alexandrii; 1.079761063 1.126224343 1.084858372 1.079193252 1.071674471 1.099471346 1.039869409 1.059140588 1.077598712 1.071408243 1.078493362 1.082736852 1.051496783 1.061556183 1.080156588 1.0603253 1.120578757 1.111732045 114763950 urec Roseovarius sp. HTCC2601 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pelagibaca;species:Pelagibaca bermudensis; 1.09917193 1.140159356 1.090723202 1.087305939 1.084483353 1.109435272 1.046213853 1.041895621 1.084415562 1.053474585 1.070575437 1.06009526 1.052585508 1.041007619 1.019415802 1.022854395 1.107641144 1.078077554 383794999 linc Fervidicoccus fontis Kam940 Organic Remediation Pesticides related compound NA superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Fervidicoccales;family:Fervidicoccaceae;genus:Fervidicoccus;species:Fervidicoccus fontis; 0.970379807 1.016121052 0.997466866 0.981928052 0.968757866 0.941070997 0.958497214 0.96707075 0.986781121 0.906713766 0.936591522 0.971170315 0.913934058 0.962025061 0.967612487 0.925215409 1.078807923 1.004556392 146405349 mdlc Bradyrhizobium sp. BTAi1 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 1.555045277 1.541404321 1.517689654 1.515421835 1.519148007 1.539930269 1.498923511 1.5097345 1.513569491 1.486167389 1.514333259 1.5296034 1.4985558 1.482161694 1.504104541 1.499979172 1.539910009 1.477380342 118424502 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.99846378 0.992076753 0.999996509 1.047348225 0.990695993 0.983429644 0.985890161 0.997072288 1.012591823 0.981415841 0.976753124 0.986884123 0.967148175 0.938603593 0.953139052 0.948167961 1.033172979 0.991234637 171705277 phytase Yersinia frederiksenii Phosphorus Phytic acid hydrolysis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia; 1.183093945 1.183231617 1.162529279 1.155622568 1.134250736 1.196180981 1.136387503 1.169908582 1.161206177 1.166616796 1.135442815 1.178055556 1.114244715 1.135409593 1.091389739 1.143185492 1.165384607 1.155987178 77379125 mer uncultured bacterium Metal Homeostasis Mercury Detoxification superkingdom:Bacteria; 1.218870266 1.19981826 1.195108575 1.149439493 1.169828096 1.198806976 1.150845599 1.126491194 1.175376434 1.153512676 1.205194881 1.165332748 1.192150611 1.13035423 1.125082352 1.118777113 1.187909726 1.182563034 357423825 ppx Azospirillum lipoferum 4B Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum lipoferum; 0.77133429 0.785349052 0.815985201 0.871248164 0.82629351 0.807004058 0.828269806 0.831302519 0.829367546 0.844673054 0.880068258 56678835 pgk Ruegeria pomeroyi DSS-3 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 1.236636097 1.212891549 1.205119474 1.231709078 1.203708807 1.25844916 1.178763043 1.169617091 1.210918007 1.162455404 1.174844293 1.18252515 1.159579371 1.149623105 1.136298081 1.181734278 1.232399248 1.219470561 126703742 FBP_aldolase Rhodobacterales bacterium HTCC2150 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 0.877468081 0.910854744 0.838038578 0.823469359 0.855333235 0.888387042 0.820345379 0.832567629 0.892268252 0.867496401 0.831386609 0.852616245 0.851376814 0.847625308 0.93250738 0.838103142 258592928 gdh Candidatus Methylomirabilis oxyfera Nitrogen Ammonification NA superkingdom:Bacteria;genus:Candidatus Methylomirabilis; 0.887598735 0.868860602 0.910401103 0.910417171 0.924675804 0.90368115 0.895029696 0.914321996 0.88466136 0.921411915 0.864493503 0.876839339 0.913949757 0.887553272 0.89318903 0.874931291 0.90004488 0.91667989 357428395 nirb Azospirillum lipoferum 4B Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum lipoferum; 1.336117358 1.323121265 1.309184557 1.326342868 1.315137546 1.32396116 1.278778904 1.301561014 1.323387045 1.282369339 1.274801567 1.320974526 1.28441906 1.256241131 1.283810215 1.2820059 1.323696228 1.298585895 291513742 amyA Alistipes shahii WAL 8301 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Rikenellaceae;genus:Alistipes;species:Alistipes shahii; 0.928409228 0.897634367 0.908857804 0.913586105 0.86887143 0.927293988 0.877857679 0.863900366 0.888169312 0.895015209 0.904081302 0.848882632 0.856400075 0.839073107 0.887684846 0.913209518 0.90130165 0.94668844 333988912 urec Mycobacterium sp. JDM601 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 1.024660518 1.068434294 1.059246064 1.012368969 1.048689369 1.056890751 1.031732176 1.008592967 1.021444653 1.035857527 1.07693153 1.022322185 1.038281666 1.017288427 1.002931114 1.031064858 1.02716545 1.042325876 152966388 nitro Kineococcus radiotolerans SRS30216 Organic Remediation Others NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Kineosporiaceae;genus:Kineococcus;species:Kineococcus radiotolerans; 0.981714402 0.94776865 0.970083709 0.994529895 0.99341359 0.931825924 0.926702252 0.934616084 0.972101581 0.937810239 0.922576602 0.969140201 0.976062539 0.893048034 0.928134409 0.937990222 0.985043519 0.942168617 95025845 pec_Cdeg Emericella nidulans Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella; 0.965569822 0.869304069 0.897838953 0.905652899 0.855807687 0.870110739 0.836979561 0.956042258 0.894429528 0.82887179 0.823483924 0.827181515 0.804605855 0.804712549 0.876027178 0.849063946 357590695 pcag Corynebacterium nuruki S6-4 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium nuruki; 0.970100323 0.969930569 1.008400183 0.977203756 0.899370704 0.95018105 0.908572307 0.91129756 0.977582794 0.940725153 0.913746912 0.880287031 0.887541702 0.926139259 0.863173198 0.893512935 0.965348377 0.955924362 112463925 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.357746746 1.338091148 1.351489186 1.39263656 1.355177897 1.353880892 1.364231485 1.38742557 1.370672172 1.3437422 1.344956322 1.393535979 1.335030692 1.310265677 1.336946456 1.352940251 1.352500643 1.326169855 55772793 SoxC Thermus thermophilus HB8 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus;species:Thermus thermophilus; 1.003186337 0.978592919 1.051118648 1.039113922 0.995793122 1.006744596 0.993022915 1.028410981 1.020522238 0.980593885 0.978325739 1.021502323 0.940183713 0.961582819 0.988208086 0.994071464 0.991149493 1.003113155 159475477 actin_Viridiplantae Chlamydomonas reinhardtii Other Phylogenetic NA superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Chlorophyceae;order:Chlamydomonadales;family:Chlamydomonadaceae;genus:Chlamydomonas; 0.99567979 0.957932881 0.95031043 1.001829859 0.970525985 0.965033676 0.962881838 0.959905565 1.002285556 0.981523516 0.941403039 0.973479191 0.938359986 0.955078167 0.936574705 0.942622923 0.972926342 0.981171655 344342075 ccmL Thiocapsa marina 5811 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiocapsa;species:Thiocapsa marina; 1.269740941 1.245564597 1.233708416 1.273715031 1.258076406 1.285967662 1.237343705 1.255821724 1.247361357 1.198215084 1.204813742 1.244354086 1.224248868 1.186236473 1.236661779 1.210882354 1.274801181 1.229376067 344212728 amyA Haloarcula hispanica ATCC 33960 Carbon Cycling Carbon degradation Starch superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloarcula;species:Haloarcula hispanica; 1.277006334 1.262586706 1.239997244 1.268421119 1.205975082 1.246823355 1.211433597 1.248339129 1.252405308 1.222713561 1.22603677 1.241519478 1.205789815 1.18769974 1.182441548 1.213861085 1.255678101 1.241837166 383937093 chitinase Rheinheimera nanhaiensis E407-8 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Rheinheimera;species:Rheinheimera nanhaiensis; 0.955987823 0.925855996 0.910946555 0.991150407 0.927690273 0.952607128 0.94903714 0.969701555 0.965931955 0.889373131 0.910799339 0.941278642 0.909072022 0.956034281 0.86983168 0.902096994 0.976843309 0.903843624 296270821 amyA Thermobispora bispora DSM 43833 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Thermobispora;species:Thermobispora bispora; 1.195002399 1.170079226 1.162488394 1.173801175 1.149528921 1.178267104 1.156742353 1.174713792 1.15489485 1.144654511 1.148777057 1.158165568 1.16141074 1.130771407 1.148706766 1.149012107 1.200308152 1.157616021 114192500 lactase_fungi Aspergillus terreus NIH2624 Carbon Cycling Carbon degradation Lactose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 0.826552046 0.873403109 0.854316969 0.81753444 0.888860933 0.862968746 0.817430856 0.810095371 0.822437044 0.865972523 0.83639024 0.813648508 0.804923817 0.878313575 373547273 xylj Mycobacterium tusciae JS617 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tusciae; 0.858919967 0.868426793 0.866781595 0.883175422 0.806379589 0.822299742 0.784918882 0.787594817 0.909750531 0.828332695 0.800462444 0.82672011 0.869541371 0.835088087 56799047 catechol_b uncultured bacterium Organic Remediation Aromatics Other aromatics superkingdom:Bacteria; 1.60548044 1.564943707 1.54564791 1.564445106 1.524633423 1.598241514 1.524599763 1.547826233 1.542310881 1.537840318 1.531816033 1.547544782 1.520352592 1.526550423 1.518592996 1.526937415 1.5839571 1.541400951 124262382 chnb Methylibium petroleiphilum PM1 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 1.002341884 0.989928667 0.999619686 1.053077896 1.043623128 0.998575967 1.018759103 1.031717358 1.023382764 0.988937988 1.014052527 0.988919207 0.956822025 0.918343543 0.941637929 0.953849242 1.006226599 1.020349707 299793943 mhpc Amycolatopsis mediterranei U32 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 1.080424784 1.04578587 1.056414891 1.099955295 1.060667541 1.077767387 1.026008892 1.077462263 1.085412559 1.054442544 1.041379828 1.074014811 1.050068883 1.073841719 1.051640833 1.044783649 1.06466617 1.03450029 345000618 chitinase Streptomyces sp. SirexAA-E Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 0.779276499 0.806779401 0.824573894 0.815225743 259652647 TIM Ruegeria pomeroyi DSS-3 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 1.395778953 1.361301168 1.354698434 1.381052325 1.33454166 1.380956324 1.338814742 1.360307825 1.350602714 1.322169361 1.35073578 1.337793858 1.330192029 1.30695714 1.268381014 1.329672029 1.381129381 1.33799946 289208045 CsoS2 Thioalkalivibrio sp. K90mix Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio; 1.020805522 0.982770539 1.045705942 1.099336212 1.021504053 1.046522975 1.017240875 1.066497912 1.079959672 1.026913091 0.996078033 1.052715343 1.017471624 1.01075612 0.982852406 0.997880224 1.051749891 1.02657832 53828149 dsra uncultured Desulfovibrio sp. Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 1.060409369 1.043689702 1.064803881 1.067153041 1.020605332 1.078250244 1.004043947 0.98886705 0.995567568 1.01067603 0.975338894 0.989435339 1.020187718 0.998024362 1.015791038 0.986911012 1.071263476 1.049173432 302435484 xylg Streptomyces sp. AA4 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 0.835200013 0.829034286 0.810700477 0.878679007 0.794292018 0.814085284 0.830020251 0.838866453 0.8653817 116090307 aoxb Ancylobacter sp. OL1 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Ancylobacter; 1.058357292 1.043892732 0.978095499 1.033365996 0.992086415 1.059917364 0.994088123 1.005905207 1.033710377 1.039488623 1.045288988 1.0262634 1.013386326 1.012802426 0.984541238 0.9991495 1.059796592 1.059357905 90201441 arsc Mycobacterium vanbaalenii PYR-1 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 1.009615154 0.952471997 0.997512228 1.022918721 0.994083666 1.001639818 0.99577774 1.003465132 1.002238847 0.979329949 0.983425323 0.988152466 0.958573612 0.917315428 0.933180892 0.953241807 1.003275982 0.992400964 219861028 rgl Arthrobacter chlorophenolicus A6 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 0.938978284 1.023658622 0.89148841 0.91240932 0.940160989 1.004520091 0.906460534 0.929717273 0.962495203 0.968579959 0.894612753 0.958582762 0.929472943 0.913546193 0.912477352 0.930467559 0.952755916 1.042754245 167564754 phn Burkholderia oklahomensis EO147 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia oklahomensis; 1.111890163 1.133598028 1.123308023 1.129938806 1.119009337 1.120343095 1.130201632 1.122136923 1.121049495 1.134689205 1.122145823 1.138737939 1.091557933 1.073571522 1.053398332 1.075551883 1.150339549 1.138286199 151302317 aps_apra sulfate-reducing bacterium DSM 14454 Sulfur adenylylsulfate reductase NA superkingdom:Bacteria; 0.890145474 0.818472274 0.86940374 0.835499322 0.845373627 0.808840676 0.855567953 0.879188896 0.854857011 0.851414844 0.821499815 0.906651459 0.811101878 0.80038102 0.826456786 0.864673885 0.859514056 308226367 amyA Oscillochloris trichoides DG6 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Oscillochloridaceae;genus:Oscillochloris;species:Oscillochloris trichoides; 1.180709198 1.07735417 1.0575782 1.109838028 1.051177039 1.0756161 1.053257159 1.088192122 1.076039856 1.047440618 1.034921909 1.061137645 1.0331442 1.041627166 1.039310481 1.059215572 1.094453389 1.090121264 334730693 linb Ramlibacter tataouinensis TTB310 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Ramlibacter;species:Ramlibacter tataouinensis; 1.204822717 1.132695872 1.122108234 1.133107835 1.118078202 1.118314688 1.075149188 1.159688742 1.132169477 1.109471773 1.160407265 1.15619986 1.105032577 1.111698465 1.075296016 1.135241864 1.13641813 1.12537007 358637761 ppx Azoarcus sp. KH32C Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 1.041237739 1.064005841 0.995267583 1.035914275 0.980480021 1.033781916 1.010202556 0.995734837 1.025282198 1.021071448 0.967979765 1.011147968 0.946815055 0.994500183 0.90177701 0.934301533 1.023426865 1.055533912 385183957 xylj Burkholderia sp. Ch1-1 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 1.335095649 1.320016576 1.279884154 1.295957678 1.281454592 1.33117262 1.275980832 1.291240789 1.297954456 1.285391183 1.272249007 1.294568845 1.240873157 1.273413811 1.261974697 1.287280974 1.308224491 1.291898266 384059394 ppx Acetobacter pasteurianus IFO 3283-26 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acetobacter;species:Acetobacter pasteurianus; 0.826123307 0.815279795 0.918609175 0.96859959 0.949987395 0.848153753 0.898772232 0.93096326 0.93323104 0.916661046 0.907797768 0.890539226 0.878528403 0.862472653 0.901805649 0.94572639 0.850301569 0.868155113 302678239 p450aro Schizophyllum commune H4-8 Organic Remediation Aromatics polycyclic aromatics superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 0.945578054 0.963737419 0.92539781 1.008928012 0.965491499 0.962943528 0.955481604 0.965893532 0.945595327 0.970692179 0.945360691 0.893671542 0.895754391 0.932746575 0.986480737 0.959043784 298273079 pme Bacteroides sp. D22 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides; 0.992358797 0.998668972 0.950879518 0.969351533 0.954083684 0.995653029 0.970940013 0.956144333 0.997567406 1.015341798 0.975006396 0.99253628 0.966592727 0.939574874 0.923645088 0.976788633 1.001075999 0.981455568 374990358 glucoamylase Streptomyces bingchenggensis BCW-1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces bingchenggensis; 1.125295347 1.111850645 1.152538472 1.142081945 1.102309005 1.096130448 1.110541771 1.120170094 1.102001921 1.10341139 1.092182389 1.11208182 1.063860426 1.037570784 1.023592257 1.082332693 1.129230311 1.09204788 403719106 nhh Kineosphaera limosa NBRC 100340 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dermatophilaceae;genus:Kineosphaera;species:Kineosphaera limosa; 1.127027796 1.12338295 1.092210767 1.124808709 1.077862329 1.134719592 1.100234907 1.092727126 1.098068958 1.109256156 1.060600678 1.094516983 1.043474066 1.063141874 1.001907774 1.026037977 1.104617383 1.105823485 291565753 FBPase Arthrospira platensis NIES-39 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Arthrospira;species:Arthrospira platensis; 0.813258905 0.801815045 21219419 dehh Streptomyces coelicolor A3(2) Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 1.067792937 1.087776613 1.072058154 1.084126798 1.063721353 1.091999789 1.045558977 1.038765044 1.059111697 1.083384223 1.014618621 1.031885727 1.014707636 1.047931031 0.984135788 1.00655252 1.074723503 1.08963456 219945071 exaa(moxf) Methylobacterium nodulans ORS 2060 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 1.062638033 1.051978537 1.045559065 1.092537847 1.062309425 1.036577313 1.052685166 1.056325381 1.058441202 1.04816368 1.018095441 1.065339347 1.033979093 0.992519888 0.97463864 1.019293965 1.051451348 1.019967239 50950653 xyla Leifsonia xyli subsp. xyli str. CTCB07 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Leifsonia;species:Leifsonia xyli; 1.171978854 1.162956912 1.163073391 1.166118343 1.141584266 1.178093315 1.121644821 1.129923191 1.151590055 1.176866729 1.149292943 1.146547718 1.123546094 1.167318237 1.079453743 1.133846455 1.175429671 1.17511349 151424034 sucD Sulfurovum sp. NBC37-1 Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;genus:Sulfurovum; 0.922402345 0.803706618 0.820302026 0.802568558 0.845505634 0.903521502 147829218 xylanase Clavibacter michiganensis subsp. michiganensis NCPPB 382 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Clavibacter;species:Clavibacter michiganensis; 0.872239023 0.876421287 0.887206945 0.870270712 0.866448098 0.876513972 0.877736603 0.857097066 0.880000098 0.943729404 0.904657903 0.877635682 0.827637631 0.888023337 0.809187322 0.879708528 0.903845232 0.931853732 333604378 amyA Paenibacillus sp. HGF7 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 0.915679538 0.912816431 0.934246853 0.970755806 0.935623238 0.933543479 0.92250333 0.957337955 0.983026658 0.976604452 0.896240812 0.969558559 0.911661614 0.896504688 0.857512095 0.846574885 0.949314968 0.975800713 311888478 bphd Rhodococcus equi 103S Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus equi; 1.088306263 1.051170669 1.098023848 1.059737807 1.027280321 1.044488025 0.989859029 1.015264737 1.036986368 1.049402477 1.055016345 1.023513482 1.043200128 1.030122903 1.00608176 1.039940289 1.096344713 1.048337074 40745790 nagg Aspergillus nidulans FGSC A4 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 0.775463779 0.837445813 0.819312926 0.835636239 0.866693453 0.819441008 0.822067935 0.83373442 0.789837225 0.849796871 0.818196538 0.811005203 0.877214842 0.795121011 0.84821749 0.777003472 0.832884471 260623477 RgaE Bacteroides finegoldii DSM 17565 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides finegoldii; 1.173591934 1.150149107 1.137760899 1.222316207 1.131841214 1.130410252 1.152336429 1.16732385 1.197282497 1.161128074 1.142658251 1.164167537 1.116004168 1.135440418 1.120496996 1.107062451 1.115356829 1.155958332 364569300 ccmL Hafnia alvei ATCC 51873 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Hafnia;species:Hafnia alvei; 0.953526291 0.972893494 0.920730759 0.95868929 0.919986559 0.983137615 0.935693563 0.934460081 0.987430862 0.933964939 0.919790154 0.934164045 0.92601736 0.878703752 0.915850145 0.872588632 0.983546227 0.979001958 295429836 pme Caulobacter segnis ATCC 21756 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter segnis; 1.178716638 1.15620226 1.160701015 1.158595172 1.180236683 1.163228036 1.155265785 1.175771257 1.176334181 1.155045186 1.170871329 1.187706086 1.158459491 1.134496773 1.132567795 1.14495076 1.159625195 1.157389483 150029194 tktA Sinorhizobium medicae WSM419 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 1.337479622 1.306115841 1.284510864 1.312143541 1.277311219 1.297251931 1.276563391 1.307029102 1.298239424 1.296314558 1.268992457 1.319795297 1.252091877 1.257797824 1.280057153 1.270813559 1.303867928 1.270222168 164456102 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 1.004710073 0.990013011 0.989514154 0.98078403 0.993781903 0.970642876 0.984806164 0.9590178 0.999520659 0.994950101 0.967899888 0.953722188 0.991031226 0.928605373 0.947585362 0.956361334 1.002670213 1.002272019 330998750 tehb Parasutterella excrementihominis YIT 11859 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Sutterellaceae;genus:Parasutterella;species:Parasutterella excrementihominis; 0.957514833 0.909589102 0.979208835 1.035872671 0.946363435 0.97422106 0.956825588 0.945217332 0.959153254 0.9489758 0.919603749 0.979610327 0.921849866 0.912396164 0.903540899 0.920485637 0.958361976 0.965840341 259344781 GAPDH_Calvin Silicibacter sp. TrichCH4B Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 0.980726878 0.967172967 0.960903731 0.972437153 0.93704195 0.984736784 0.939162956 0.962786319 0.976710123 0.959944436 0.954006171 0.96172829 0.941488582 0.941679632 0.920539129 0.907646001 0.969809539 0.975553953 307595865 mdh_DiC4HB Vulcanisaeta distributa DSM 14429 Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Vulcanisaeta;species:Vulcanisaeta distributa; 0.791584582 0.82941567 0.82660671 0.837807446 229323920 vdh Rhodococcus erythropolis SK121 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 1.078717813 1.07752972 1.051564361 1.070917257 1.066722671 1.083007822 1.035465815 1.056543554 1.073055829 1.019066815 1.038019475 1.081642565 1.034354409 1.005216646 1.024268119 1.013734391 1.091594061 1.046622767 209486804 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.941703063 0.879315403 0.981613404 0.991542979 0.919538641 0.919113482 0.953309506 0.95254983 0.972423991 0.908556229 1.1193404 0.978852941 0.900419657 0.885840387 0.900044731 0.904636859 0.942947405 0.931750446 323137710 ppx Methylocystis sp. ATCC 49242 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylocystaceae;genus:Methylocystis; 1.132164181 1.127406222 1.110836863 1.138155804 1.136762715 1.162508488 1.152278911 1.119888586 1.109100597 1.141519079 1.150330036 1.144419944 1.138361502 1.106718881 1.119315996 1.138137216 1.133011907 1.111583556 407788393 one_ring_12diox Celeribacter baekdonensis B30 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Celeribacter;species:Celeribacter baekdonensis; 0.856201202 0.82706055 0.853679404 0.855921359 0.796758938 0.850710194 0.857390497 0.837470897 0.82927382 0.847427487 0.824513297 0.803077014 0.809951584 0.846705559 0.841943246 0.796013502 0.808019619 359423229 gdh Gordonia amarae NBRC 15530 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia amarae; 1.015589336 0.994980426 0.920553299 0.984081607 1.064179054 1.007530643 0.978846927 0.963413482 0.967920668 1.012007448 1.000138709 0.977617133 0.948482449 0.952132558 0.930715619 1.002432378 0.988120272 1.001598685 257064787 fthfs Slackia heliotrinireducens DSM 20476 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Slackia;species:Slackia heliotrinireducens; 0.921304648 0.944038671 0.909818174 0.928506769 0.896047155 0.910716174 0.84342008 0.932954416 0.875132154 0.885000008 0.879256101 0.886908229 0.859724737 0.909546023 0.86526284 0.871767738 0.906481031 0.935970607 262026233 PRI Vibrio mimicus VM223 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio mimicus; 0.789416365 1.107519741 1.045227508 0.960429842 0.801064492 1.000816266 0.82211056 0.862060747 0.830821965 344223831 tktA endosymbiont of Riftia pachyptila (vent Ph05) Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;species:endosymbiont of Riftia pachyptila; 0.785237916 0.825331146 0.82705854 0.79981933 378747720 aps_apra uncultured Nitrospirae bacterium Sulfur adenylylsulfate reductase NA superkingdom:Bacteria;phylum:Nitrospirae; 0.94515348 0.943634621 0.876729906 0.911962561 0.854905556 0.876959119 0.84998419 0.870648457 0.874105094 0.853811679 0.844408419 0.892515264 0.848304459 0.823910285 0.880775844 0.915350303 0.906137076 118730375 atzb Delftia acidovorans SPH-1 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 1.223058348 1.107498881 1.118461941 1.172308648 1.133141065 1.140203771 1.129606368 1.167405541 1.122901942 1.119637003 1.09018923 1.144584635 1.088133026 1.076225351 1.071262025 1.081611236 1.150556726 1.166156854 289529770 mdlc Natrialba magadii ATCC 43099 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Natrialba;species:Natrialba magadii; 0.763370513 0.796566193 0.825193977 0.852322061 0.824194796 0.908039944 0.848848805 0.788925608 0.827683999 0.806877896 0.796319468 0.906639892 257785190 4hbcd Acidianus infernus Carbon Cycling Carbon fixation 3-hydroxypropionate/4-hydroxybutyrate cycle superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Sulfolobales;family:Sulfolobaceae;genus:Acidianus; 0.887487084 0.82762548 56313029 ben_bcla Aromatoleum aromaticum EbN1 virulence NA NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 1.317114986 1.297954385 1.314899963 1.308916673 1.290238929 1.326440559 1.281073471 1.30504503 1.401081087 1.269437447 1.299888083 1.302404373 1.275986495 1.237928354 1.340365652 1.298200294 1.349456404 1.295229157 16081843 gdh Thermoplasma acidophilum DSM 1728 Nitrogen Ammonification NA superkingdom:Archaea;phylum:Euryarchaeota;class:Thermoplasmata;order:Thermoplasmatales;family:Thermoplasmataceae;genus:Thermoplasma;species:Thermoplasma acidophilum; 1.049104048 0.988556327 0.986714972 0.996473632 0.974733828 0.970690775 0.944966207 1.009061857 1.021634935 0.988644206 0.999134138 0.978278218 0.949936844 0.986216856 0.940946231 0.978195539 1.020123151 0.994194593 167772488 amyA Anaerotruncus colihominis DSM 17241 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Anaerotruncus;species:Anaerotruncus colihominis; 0.966348876 0.967272094 0.952083035 0.999863189 0.968928115 0.966660374 0.957815469 0.952070163 0.95962484 0.957581029 0.945573032 0.960809333 0.969597308 0.928201868 0.944795139 0.964663147 1.008792869 0.952485503 359840651 chitinase Actinoplanes sp. SE50/110 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes; 1.085151392 1.055831044 1.048458326 1.069739496 0.996470537 1.080764002 1.030186597 1.036519481 1.080622327 1.053076723 0.974060766 1.04665849 1.062600157 1.014325388 0.947013275 1.020286439 1.075175929 1.075662573 6468411 pgk Pseudomonas sp. 'TAC II 18' Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 1.003057795 0.974994118 0.957259442 1.020403688 0.983799599 0.962923881 0.984543752 0.965423455 0.996479931 1.019976666 0.96256998 1.001119295 0.96019285 0.877541925 0.897998664 0.891317359 0.987859461 0.962694656 251789055 xylanase Dickeya zeae Ech1591 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya zeae; 0.795883916 0.800167968 0.810755236 0.800019447 0.816149005 0.834862386 0.831215391 0.808260595 0.812617852 0.836360933 319783888 b_lactamase Mesorhizobium ciceri biovar biserrulae WSM1271 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium ciceri; 1.109466376 1.10765158 1.054210724 1.055025642 1.051371395 1.005410304 1.010159078 1.051003505 1.032823258 1.045514849 1.020220875 1.072648633 1.004710362 0.999489484 0.989250737 0.972220069 1.049554468 1.026336762 389932116 ppx Burkholderia terrae BS001 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia terrae; 0.816566588 0.848857589 0.809614411 0.822482799 0.824503298 0.819955975 0.813257602 0.79662603 0.841068864 237885398 alkb Micromonospora sp. ATCC 39149 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Micromonospora; 0.97737143 0.86372834 0.968835107 1.002257447 0.983903805 0.961754195 1.011364266 1.003665632 0.978146431 0.929016097 0.927818377 0.937035746 0.922394708 0.878332676 0.83096888 0.914593286 0.956007797 0.944872745 310763282 fccab Achromobacter xylosoxidans A8 Sulfur Sulfide Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter;species:Achromobacter xylosoxidans; 1.057677833 1.025159632 1.0229447 1.059115954 1.069183175 1.042013915 0.938783631 1.012008269 1.028561594 1.024693976 1.004308731 1.030651444 0.998302758 0.947598162 0.959094204 0.970927258 1.068202895 1.034049181 95109326 nitro Pseudomonas Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae; 0.959926546 0.939620641 0.93070787 0.973235902 0.927366204 0.968209273 0.927506965 0.904984271 0.934125073 0.909372013 0.951846021 0.936781017 0.870140874 0.90434331 0.919827127 0.886521294 0.988040634 0.95483223 330688042 aoxb uncultured bacterium Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 1.036725645 0.982209554 0.978504995 0.998976209 1.040346577 1.02428798 0.987989227 0.958500877 1.156478984 0.990867211 0.986714057 0.993268243 1.023815768 1.044362807 1.005726881 0.990475006 0.99405392 1.002513569 214037081 tktA marine gamma proteobacterium HTCC2148 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 0.942640047 0.892621772 0.855891285 0.907558045 0.924120879 0.925528474 0.838149861 0.851203829 0.932985753 0.955991617 0.951651409 0.883941317 0.946111745 0.91465117 0.897610342 0.860767214 0.864183432 107029134 tfda Burkholderia cenocepacia AU 1054 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cenocepacia; 1.00604345 0.999246512 0.968283373 1.028158919 0.961951494 0.999864925 0.989219508 0.990060212 0.984118064 0.978217838 0.950089131 1.003791795 0.929770049 0.957859047 0.911110869 0.945210469 0.997857046 0.981903923 354960072 poba Bradyrhizobium japonicum USDA 6 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 0.774914918 0.86268715 0.826673534 0.835703849 0.878711315 0.865585283 0.791459795 0.892498342 0.890085375 0.846737405 0.869911696 0.918203102 0.83922996 0.801871627 0.871985751 326199167 arsc Gordonia neofelifaecis NRRL B-59395 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia neofelifaecis; 1.058179925 1.089713481 1.044781912 1.102470942 1.062866942 1.081289662 1.009439795 1.040222371 1.060197511 1.050022657 1.005597655 1.059057127 1.027664714 1.031579349 0.977949626 1.020598317 1.109907111 1.112759091 383826075 merb Mycobacterium xenopi RIVM700367 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium xenopi; 1.080679741 1.10523127 1.120154674 1.065735472 1.10207362 1.130738691 1.102628703 1.072557423 1.045175662 1.111603675 1.110147961 1.079551516 1.042116628 1.076985418 1.023754593 1.070992234 1.137894128 1.137133743 192282915 ben_bcla Rhodopseudomonas palustris TIE-1 virulence NA NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 1.047477128 1.082250302 1.01331789 1.066368745 1.019291999 1.087989982 1.014432893 1.036665476 1.095155829 1.02602063 1.017048072 1.034728409 1.009716568 1.030047244 0.987412882 1.019048099 1.070541611 1.064392372 117619150 amyA Aeromonas hydrophila subsp. hydrophila ATCC 7966 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas hydrophila; 1.088817434 1.091362324 1.08910435 1.077440704 1.069355307 1.102042734 1.059106507 1.043660807 1.057654325 1.044384203 1.039384935 1.053901807 1.045181148 1.029758374 1.020816083 1.041090949 1.0935047 1.073668426 159477197 nitrate_reductase Chlamydomonas reinhardtii Nitrogen N Assimilation NA superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Chlorophyceae;order:Chlamydomonadales;family:Chlamydomonadaceae;genus:Chlamydomonas; 0.787011299 0.850953604 0.870511649 0.893334432 0.825260589 0.801065361 0.794624267 0.865117515 0.83847022 0.866220297 0.813885258 0.822615505 0.804361583 206576010 mhpb Klebsiella pneumoniae 342 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 1.220417313 1.211656402 1.198982455 1.227024473 1.187048523 1.17372539 1.176221889 1.157345581 1.218349174 1.195663556 1.191583943 1.179280565 1.1607585 1.112092583 1.142405276 1.170927738 1.231175566 1.212768744 316997264 amyA Kocuria varians Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Kocuria; 1.069188852 1.048293088 1.066160321 1.098606748 1.030853045 1.099167236 1.031045611 1.090463069 1.066255325 1.053722414 1.049690908 1.025959278 1.075831997 0.987486005 0.975493449 1.029328012 1.106740371 1.068570781 60476012 rubisco uncultured bacterium Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria; 0.847858269 0.869038846 0.869407091 0.891439095 0.854957704 0.868383422 0.88066195 0.904680085 0.975712962 0.886005566 0.87010853 0.840717436 0.816984583 0.82443603 0.80735706 0.797774209 0.886633347 0.87585623 241113659 TIM Rhizobium leguminosarum bv. trifolii WSM1325 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 1.160444346 1.138783347 1.098871327 1.155791107 1.078877226 1.131421368 1.068530189 1.083843589 1.107098258 1.105134598 1.101434795 1.10839008 1.077055064 1.087730608 1.080409241 1.121005086 1.154050989 1.107079826 225683239 nirk Paracoccidioides brasiliensis Pb03 Nitrogen Denitrification NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;genus:Paracoccidioides;species:Paracoccidioides brasiliensis; 1.493985011 1.43365376 1.415268587 1.446157277 1.463148483 1.45232591 1.438831502 1.450907483 1.438781827 1.397693949 1.425876236 1.449471337 1.454275464 1.368341682 1.428133585 1.413621587 1.442454934 1.405236756 346644299 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.9024137 0.877274459 0.846858862 0.883662235 0.826543148 0.875697558 0.885474243 0.856744868 0.822820293 0.87391453 0.84323664 0.844324277 0.836650034 0.900244167 0.851568108 74038398 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.87274427 0.915569634 0.84709397 0.866985986 0.820135953 0.86246066 0.816537638 0.854485242 0.821912128 0.875046105 0.830302966 0.852710205 0.844978039 0.842150435 0.844437222 0.821703375 0.926635669 257797802 arsc Desulfohalobium retbaense DSM 5692 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfohalobiaceae;genus:Desulfohalobium;species:Desulfohalobium retbaense; 1.001266995 1.07308702 0.965660929 1.010560865 1.000360662 1.073758819 0.975300607 1.00258251 0.993534652 1.075757932 1.034902955 1.035181179 1.021479835 1.029617588 0.936375035 1.005001526 1.014778002 1.06082705 407803058 alkb Alcanivorax sp. W11-5 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax;species:Alcanivorax pacificus; 0.989504755 0.989407751 1.000508491 1.051683573 1.014666451 1.050613284 0.997687719 0.976101873 0.951294941 0.943635628 0.967086927 0.934870024 0.996234103 0.978907431 0.975293748 0.980322975 1.033028608 0.999807023 262014342 protease_serine_fungi Arthrobotrys vermicola Carbon Cycling Carbon degradation protein superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Orbiliomycetes;order:Orbiliales;family:Orbiliaceae;genus:Arthrobotrys; 1.038925685 1.044500643 1.035049336 1.048853608 0.978562306 1.068781385 1.029509851 1.047515992 1.060338155 1.028070197 0.991275473 1.00655288 0.960940228 1.023568506 0.893654555 1.021003855 1.048166842 1.016687974 377810815 xylc Burkholderia sp. YI23 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 1.004879884 0.976050522 0.985575076 1.021508527 0.988987354 0.969416768 0.961577811 0.998368183 0.965730652 0.927421405 0.966694606 0.969387375 0.920227625 0.903226495 0.910203721 0.881056631 1.012263263 0.987487066 359423194 badh Gordonia amarae NBRC 15530 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia amarae; 0.859769496 0.873218455 0.913850678 0.866950504 0.841406142 0.795603937 0.84083229 0.853456784 0.852273067 0.877118733 0.8482046 0.835779432 0.818932922 0.884973723 0.853145918 114327520 tktA Granulibacter bethesdensis CGDNIH1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Granulibacter;species:Granulibacter bethesdensis; 0.877216658 0.87966359 0.861679949 0.874188882 0.880856195 0.869255017 0.887073644 0.885404778 0.886937969 0.873052276 0.835890187 0.840972773 0.807832908 0.869683113 0.836799623 0.851054147 88814828 cda marine actinobacterium PHSC20C1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria; 0.772872958 0.840358524 392721330 tfda Novosphingobium sp. Rr 2-17 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 1.021465155 0.975907726 0.99352712 0.961511351 1.006160409 0.993270779 0.999651089 0.981720809 0.962158475 0.958240503 0.955228961 1.001014548 0.91637427 0.905393507 0.915341726 0.876544193 0.947754238 1.004781097 261855030 tktA Halothiobacillus neapolitanus c2 Carbon Cycling Carbon fixation Calvin cycle 1.0397068 1.022611008 1.008697619 1.045642578 1.023108716 1.082698702 1.028591099 1.015496646 1.035736527 1.010338262 1.031696974 1.039312393 0.99997137 1.007721501 1.020113546 0.978703743 1.058338766 0.994442621 357969794 arsc Halomonas boliviensis LC1 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas;species:Halomonas boliviensis; 1.116745928 1.107650146 1.106257446 1.108740968 1.077138116 1.093155832 1.05720384 1.076984937 1.102173605 1.06990898 1.095077178 1.095798462 1.054199538 1.038076275 1.055299897 1.068546713 1.10281724 1.087005893 94471323 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.058913067 1.048325503 1.084792593 1.036909733 1.080540323 1.092937392 1.080920087 1.042067001 1.03205166 1.072863642 1.096197354 1.041549208 1.065177349 1.04732004 1.010585058 1.066212699 1.065888518 1.072204546 161897607 amyA Arthrobacter aurescens TC1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter aurescens; 1.391188802 1.34680147 1.343998159 1.352531811 1.345467624 1.393501147 1.355326521 1.368436618 1.35073981 1.331115289 1.333975704 1.3689239 1.356321582 1.294257023 1.346910286 1.334480042 1.364348628 1.325584637 116249170 badh Rhizobium leguminosarum bv. viciae 3841 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 1.04363309 1.114891701 1.044404888 1.070244166 1.08013416 1.023743784 1.020301159 1.066528753 1.080110535 1.074258653 0.973145433 1.041721935 1.017963334 1.058033147 1.00762109 1.027818203 1.070012023 1.089981127 329962236 acetylglucosaminidase Bacteroides fluxus YIT 12057 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides fluxus; 0.812961037 0.789965851 0.81992406 0.861605724 0.846593524 0.847487752 0.812917073 0.858304723 0.820708886 0.840040085 0.842148934 0.791011419 0.921940719 0.874521025 164455332 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 0.88212036 0.866334197 0.877323356 0.839990005 0.792377684 0.803513875 0.864000781 0.836209973 0.825321403 0.849369059 0.860578202 162282261 tktA Hoeflea phototrophica DFL-43 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Hoeflea;species:Hoeflea phototrophica; 0.916641231 0.90928076 0.894154009 0.891041882 0.910925513 0.938483553 0.891981659 0.836189162 0.886899346 0.916437219 0.827801151 0.860055947 0.870606054 0.850196696 0.847066471 0.880262216 0.946626402 0.937451827 395428584 terc Bartonella tamiae Th307 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bartonellaceae;genus:Bartonella;species:Bartonella tamiae; 1.339097349 1.29895974 1.289535648 1.356013719 1.348618435 1.301816442 1.346610995 1.367287841 1.346327293 1.312031757 1.29106251 1.332565556 1.325584388 1.250997236 1.27863973 1.306529992 1.313424832 1.277953924 357224867 nosz Marinobacter manganoxydans MnI7-9 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter manganoxydans; 1.034310958 0.971098405 0.978027909 1.046009543 0.97543249 0.997312375 1.011391677 1.029855154 1.030266031 0.98788803 0.961460881 1.012103584 0.99521443 0.975020158 0.968965407 1.008448905 1.021355125 0.959922873 257147866 amyA Lactobacillus rhamnosus GG Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus rhamnosus; 0.97221968 0.909178541 0.946973049 0.965928928 0.908295745 0.968374114 0.910571175 0.917056409 0.967191721 0.95327118 0.950904639 0.92587694 0.94169458 0.993567543 0.889524745 0.958967468 0.951087571 0.94462031 329114515 fccab Acetobacter pomorum DM001 Sulfur Sulfide Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acetobacter;species:Acetobacter pomorum; 1.0333658 0.927039985 0.977898054 0.992545998 0.966718383 0.959637645 1.010742351 1.008582003 0.969702612 0.943449884 0.944428358 0.9527744 0.914288658 0.912652873 0.910780025 0.852886916 0.953352337 0.974052614 310796134 phospholipase_C_fungi Glomerella graminicola M1.001 Carbon Cycling Carbon degradation Phospholipids superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Glomerellaceae;genus:Glomerella;species:Glomerella graminicola; 0.986988091 1.015668804 0.964450302 0.993028789 0.995231102 1.028656541 0.967183545 0.97685223 0.984847433 0.988588453 0.987866164 0.972648174 0.979489552 0.97506049 0.970509617 0.934037197 1.024409712 1.04036949 303293115 fthfs Ahrensia sp. R2A130 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ahrensia; 0.867243559 0.833319494 0.83960432 0.863446472 0.832826368 0.840847437 0.830993369 0.796498241 0.880214744 0.86816698 0.845591426 0.861504213 0.823428974 0.773107124 0.846175312 0.85909117 94310455 tktA Cupriavidus metallidurans CH34 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 0.909536938 0.820486463 0.847351042 0.874614203 0.895168054 0.857544844 0.804172846 0.867092606 0.857393606 0.82446895 0.859736581 0.870348185 0.858727203 0.816342231 0.873266949 0.79643903 0.905672221 0.873861627 345298672 trze Enterobacter asburiae LF7a Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter asburiae; 0.929811761 0.928202069 0.921332745 0.981237471 0.915102797 0.971238612 0.923704414 0.912586981 0.947925361 0.911230242 0.930735983 0.933619018 0.8968243 0.942800333 0.896877408 0.910753526 0.972957421 0.947746245 261359809 Sir Verticillium albo-atrum VaMs.102 Sulfur sulfite reduction NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticillium;species:Verticillium albo-atrum; 1.063942926 1.044302855 0.98800051 1.043433228 1.000483123 1.027675336 1.018439436 1.01645357 1.040345461 1.063162118 0.987312302 1.010114168 0.992936565 1.017505214 0.91434258 0.998561738 1.037095856 1.066570337 253689983 xylanase Pectobacterium carotovorum subsp. carotovorum PC1 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium carotovorum; 0.836287061 0.837555936 0.825406483 0.865887943 0.817722929 0.846778764 0.859665237 0.840835302 0.829567432 0.834152753 0.853822867 187982733 axe Pyrenophora tritici-repentis Pt-1C-BFP Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 1.240124697 1.237883684 1.19068903 1.23008091 1.205872129 1.246503794 1.200366608 1.220360422 1.210964466 1.182105066 1.189320756 1.207301088 1.185990347 1.175742915 1.156559483 1.180650428 1.241679998 1.210970187 342316510 aoxb uncultured bacterium Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 0.7846671 0.829769586 0.829823934 373251753 ara Nesterenkonia sp. F Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Nesterenkonia; 0.910640999 0.855112205 0.799485287 0.838316489 0.864332818 0.852904367 0.823973904 0.900405645 0.861257666 56809455 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 1.036769039 1.051835651 1.007589406 0.9925544 1.097079997 1.046793221 1.094482909 0.98106721 1.018386122 1.046739684 1.013391877 1.031936961 1.061791264 1.081817308 0.985770398 0.985566525 1.001534206 1.056114241 255293023 bphc uncultured bacterium Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria; 1.170298388 1.172349681 1.140978076 1.173727069 1.153198288 1.178534975 1.164093595 1.168701223 1.16444413 1.151828142 1.097468476 1.120942054 1.123439495 1.127267831 1.07415773 1.123491632 1.163681627 1.165615574 300102225 rgh Schizophyllum commune H4-8 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 0.956710664 0.91907765 0.906665786 0.934241747 0.903041999 0.935374153 0.925042519 0.915661129 0.9129797 0.921958589 0.880641542 0.901583149 0.862230774 0.883866104 0.89723168 0.858740626 0.890824942 118758093 vana Sphingomonas wittichii RW1 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 1.274520684 1.252195841 1.260581117 1.284584526 1.250688275 1.317414024 1.229061307 1.241498219 1.259284124 1.231180311 1.21792646 1.243410164 1.236493077 1.222310762 1.241013563 1.23710356 1.303103163 1.258646972 342826822 ppx Vibrio nigripulchritudo ATCC 27043 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio nigripulchritudo; 1.048385026 0.933636009 0.997621125 1.022233504 0.989714532 0.989363284 0.900166911 0.95876118 1.014630269 0.994903128 0.99441261 0.990906993 0.967650746 0.95292757 0.939514869 0.944169216 1.025161233 0.945534439 110822175 urec Rhodococcus sp. RHA1 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 1.062940266 1.076701074 1.064028946 1.053630324 1.076775135 1.08351775 1.093507179 1.050363996 1.075086698 1.097827464 1.059404539 1.08862227 1.048820813 1.063364842 1.041774806 1.049345494 1.061772927 1.087496763 337269596 ppx Mesorhizobium opportunistum WSM2075 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium opportunistum; 1.138052412 1.086334735 1.130233478 1.141008557 1.125041799 1.138669239 1.137813747 1.136303173 1.126052821 1.095754549 1.121132064 1.127838329 1.120212096 1.074732734 1.070706712 1.095853503 1.148247099 1.094915423 17738975 ppx Agrobacterium tumefaciens str. C58 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 1.648050355 1.575186264 1.586242693 1.606582914 1.565011897 1.641691445 1.58330743 1.60432462 1.595216388 1.5803174 1.573714991 1.58180398 1.556754689 1.523473218 1.542471087 1.588069622 1.648318717 1.56595964 340030443 arsc Paracoccus sp. TRP Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus; 0.947244043 0.888999598 0.94645572 0.952266158 0.909321832 0.949607818 0.90174122 0.897799235 0.947878987 0.873315796 0.87738964 0.923865182 0.89332689 0.917084846 0.841861026 0.890379644 0.985734388 0.910744923 223983462 cellobiase Holdemania filiformis DSM 12042 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Firmicutes;class:Erysipelotrichia;order:Erysipelotrichales;family:Erysipelotrichaceae;genus:Holdemania;species:Holdemania filiformis; 0.873658645 0.803216598 0.922334725 0.849622642 0.797589762 0.826170759 0.842120282 0.832598702 0.839005895 388440524 SoxC Rhodanobacter thiooxydans LCS2 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Rhodanobacter;species:Rhodanobacter thiooxydans; 0.939276779 0.954248174 0.934358496 0.929433491 0.902553512 0.956604133 0.96576761 0.957157702 0.937068035 1.013682749 0.92386644 0.907619104 0.927320713 0.959314822 0.968662405 0.907811409 0.967377794 0.976131968 154158832 mer Xanthobacter autotrophicus Py2 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 0.912431966 0.86947307 0.847050877 0.853100032 0.868353433 0.896519791 0.829153273 0.846717857 0.848501251 0.857791792 0.829108137 0.840181772 0.881578341 0.87905393 62003515 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.169348587 1.176476313 1.164722642 1.137284977 1.127515897 1.156163452 1.112973379 1.122287883 1.147694175 1.143618174 1.127072395 1.155318706 1.104298099 1.127093809 1.087379087 1.135342138 1.156710129 1.16306292 126715555 dehh109 Roseobacter sp. CCS2 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 0.869050555 0.838799135 0.808738179 0.863081231 0.815102078 0.852113782 0.833979407 0.816781531 322421194 mer Geobacter sp. M18 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 1.266487411 1.251114996 1.209896358 1.266795789 1.216341929 1.220577172 1.209050484 1.225728433 1.229309173 1.230325597 1.216208705 1.23805921 1.188258311 1.186533913 1.183471736 1.198064929 1.241607008 1.215969406 27529597 dehh109 uncultured bacterium Organic Remediation Chlorinated solvents NA superkingdom:Bacteria; 1.16183762 1.208912203 1.169677709 1.162300964 1.18171802 1.195607246 1.139077717 1.165422301 1.130829123 1.162321795 1.15535686 1.19509501 1.140811046 1.167707785 1.152098385 1.150575869 1.192104741 1.177731594 353190525 linb Mycobacterium rhodesiae JS60 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 0.808367727 0.790966613 0.778191516 0.841985488 372273135 bphF1 Marinobacterium stanieri S30 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacterium;species:Marinobacterium stanieri; 0.946000962 0.91107107 0.882211634 0.948433647 0.854039508 0.971770789 0.856403577 0.921298671 0.94758033 0.925424882 0.90191591 0.890504989 0.851302168 0.945966762 0.870022574 0.872763822 0.967776964 0.895038059 335433571 amyA Halorhabdus tiamatea SARL4B Carbon Cycling Carbon degradation Starch superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halorhabdus;species:Halorhabdus tiamatea; 0.990040542 0.974394573 0.983747077 0.998071734 0.893197098 0.954780614 0.923225823 0.960857653 0.981219759 0.957661689 0.92024734 0.929004635 0.888245058 0.935793265 0.892648117 0.891661153 0.992597714 0.976889128 60326776 nifh uncultured nitrogen-fixing bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.859213495 0.834556407 0.836618495 0.843436247 0.896037883 0.850002648 0.819259334 0.842550655 0.819657967 0.81768832 0.822251913 0.872444198 0.855727915 0.808414462 0.831416445 0.895641503 0.86163501 164455296 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 0.845519882 0.837467844 0.797401617 0.827079723 0.815583115 0.819562818 0.820552543 0.857022054 0.863209174 0.804549743 0.814370423 0.828951055 0.812405159 0.861580782 240167790 cutinase Mycobacterium kansasii ATCC 12478 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium kansasii; 1.372089607 1.30800706 1.339748417 1.358246816 1.350212761 1.377929121 1.349366849 1.371942513 1.341485121 1.316281203 1.346605718 1.340885034 1.318183143 1.285961284 1.286527693 1.31580755 1.378442744 1.302874093 302520067 chitinase Streptomyces sp. SPB78 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 0.848314694 0.966450178 0.940865061 0.86048184 0.900382709 0.930732924 0.841949422 0.840545141 0.881954543 0.864723473 0.82554569 0.885873468 0.896766121 0.863252239 0.854344252 0.855986181 0.927970099 225016067 CsoS1_CcmK Clostridium methylpentosum DSM 5476 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium methylpentosum; 1.09675344 1.041590171 1.069722529 1.014387155 1.048197342 1.124086379 1.033542866 1.051440808 1.031357711 1.029612236 1.056114553 1.027897246 1.026088951 1.005044384 1.01208048 0.97477248 1.084678286 1.006655269 197707358 urec Streptomyces clavuligerus ATCC 27064 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces clavuligerus; 1.15948048 1.118012929 1.101262454 1.123201832 1.053967739 1.099172352 1.07495038 1.092559368 1.099120698 1.085724242 1.08427081 1.109701452 1.062695526 1.054750702 1.039114959 1.079115665 1.105390598 1.098156383 193085180 dsra Chlorobaculum parvum NCIB 8327 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobaculum;species:Chlorobaculum parvum; 0.898077414 0.847663353 0.848871725 0.896712847 0.878342781 0.839066944 0.909423201 0.867837312 0.893824458 0.852778485 0.855297749 0.893349987 0.842138507 0.80488568 0.804531558 0.890284567 0.86322109 220922349 catb Methylobacterium nodulans ORS 2060 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 0.994578552 1.048525223 0.982222735 0.991887118 0.983946672 0.999787728 0.983847427 0.982584944 1.016017712 0.973452834 0.963877987 0.999645209 0.984496519 0.936219883 0.953257127 0.976545738 1.000017376 0.977970369 422314405 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.928813383 0.977025854 0.921096633 0.949610219 0.927589084 0.970521574 0.907150533 0.876238709 0.877853505 0.91015362 0.941533186 0.931015597 0.909045804 0.922396455 0.868558513 0.936882232 0.964055004 0.962616332 398066231 phn Rhizobium sp. CF080 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 1.08634209 1.042085703 1.069163785 1.063667918 1.042540843 1.069632749 1.058656218 1.063782907 1.047671941 1.031246566 1.054999288 1.037811007 1.010687304 0.987675614 0.971330324 1.001732054 1.068487043 1.032821618 222440607 FBPase Labrenzia alexandrii DFL-11 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia alexandrii; 0.884173501 0.85251827 0.881014356 0.993992233 0.962099437 0.893497884 0.981534418 0.967657942 1.000612287 0.904425331 0.921841314 0.913815416 0.931744185 0.845001371 0.959408151 0.943737307 0.930801417 0.945721984 333389184 narg Enterobacter hormaechei ATCC 49162 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter hormaechei; 1.208714515 1.113492284 1.124827348 1.114518007 1.057753897 1.030249177 1.031203143 1.067798363 1.126878427 1.186779461 1.15383796 1.133767329 1.044273863 0.993223985 0.980339864 1.041803936 1.157596562 1.112576807 164455812 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 1.471845254 1.423558541 1.427960922 1.427620377 1.419301242 1.476358016 1.419747948 1.434338516 1.422066519 1.409282137 1.430547672 1.417171502 1.419110492 1.380205026 1.387516549 1.411700907 1.465902011 1.416013507 300586215 TIM Cupriavidus metallidurans CH34 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 1.344540152 1.342924162 1.290704332 1.328907339 1.304752721 1.327252439 1.269975788 1.288942787 1.326715317 1.277319556 1.288551854 1.309274183 1.267007606 1.241723324 1.267469476 1.274143506 1.33123547 1.323411506 379065456 ppx Pseudomonas stutzeri ATCC 14405 = CCUG 16156 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 1.209314518 1.200339642 1.202371122 1.195580011 1.186814526 1.21479553 1.169324757 1.206457296 1.181847742 1.183973495 1.178323857 1.201357713 1.173744723 1.179751327 1.168393643 1.19037086 1.198815412 1.208748906 237858247 GAPDH_Parabasalia Macrotrichomonas sp. GsMG9 Other Phylogenetic NA superkingdom:Eukaryota;order:Cristamonadida;family:Lophomonadidae;genus:Macrotrichomonas; 1.085860304 1.051252904 1.063016513 1.095722076 1.078684744 1.073435248 1.076226144 1.062449622 1.037381135 1.072788005 1.088821644 1.074317017 1.01973627 0.996691639 1.009776587 1.000416076 1.051153196 1.031075532 83026028 alkb uncultured bacterium Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria; 1.469403646 1.417281214 1.409416934 1.414590205 1.380397733 1.414711627 1.38240336 1.418602824 1.422474603 1.408879284 1.395336299 1.441970419 1.367312088 1.365575161 1.3714413 1.394519321 1.43373374 1.405253516 154362248 fthfs uncultured microorganism Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway 0.883250435 0.834195628 0.905550244 0.833081482 0.830119675 0.885887814 0.843899751 0.827201819 0.803658 0.869490072 0.843819718 0.8768668 0.810033653 86357913 catechol Rhizobium etli CFN 42 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 1.104036158 1.109529883 1.081029903 1.098324849 1.105181044 1.091751341 1.144869533 688433 exaa(moxf) Methylomicrobium album BG8 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylomicrobium;species:Methylomicrobium album; 1.071369335 1.065917732 1.065247509 1.072260599 1.092715209 1.088273271 1.09493625 1.059369985 1.071447462 1.065495115 1.090396829 1.083865009 1.08118717 1.039355534 1.074557369 1.098407914 1.094335167 1.051561061 164598122 exoglucanase Clitocybe nuda Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Tricholomataceae;genus:Clitocybe; 0.748803832 0.797922961 335881720 cysI Rheinheimera sp. A13L Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Rheinheimera; 0.941488635 1.00190052 0.902618565 0.928516774 0.921277737 0.855628691 0.92482703 0.861562015 0.888042885 0.838078845 0.915053996 0.812822594 0.948271578 0.880695798 0.960443282 0.84764632 111918708 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 1.090863033 1.027472365 1.070535759 1.073379761 1.014964017 1.039199037 1.015654596 1.077262834 1.068931316 1.04605886 1.054704458 1.071754227 1.034214989 1.02551728 1.013856544 1.028175332 1.05445224 1.021201373 299077770 cysI Ralstonia solanacearum PSI07 Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 1.192884436 1.197996562 1.134930344 1.160685256 1.111046753 1.169505032 1.086910481 1.137423848 1.152081827 1.14818195 1.128045996 1.12988129 1.10774705 1.126205339 1.096760065 1.121952688 1.16814514 1.163298251 254271693 tfda uncultured bacterium Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria; 1.086240236 1.094109091 1.074665533 1.115665894 1.091848312 1.111284346 1.057555429 1.097808674 1.08809703 1.063870334 1.061272956 1.069858939 1.021374786 1.033563217 1.031471209 1.024649741 1.086320319 1.094232089 93356203 SoxA Cupriavidus metallidurans CH34 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 0.964811544 0.940810611 0.970033247 0.984104935 0.991331204 0.98403538 0.994117597 0.969671001 0.971281745 0.935911508 0.993435881 0.961707073 0.958639545 0.912580279 0.932233045 0.916448682 0.972623961 0.95307702 256392950 amyA Catenulispora acidiphila DSM 44928 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 1.245386725 1.229976409 1.20631917 1.191259097 1.209911141 1.263281023 1.183487504 1.196093008 1.189099683 1.227748845 1.198996383 1.215591033 1.191600682 1.213635962 1.192371054 1.193803875 1.218084722 1.245217535 86606272 CsoS1_CcmK Synechococcus sp. JA-3-3Ab Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 0.84295072 0.878260045 0.803784173 0.822264514 0.868647054 0.854230569 0.852369843 0.810597883 0.838763926 0.796615164 0.802221707 0.813908269 0.839421288 0.847282006 14571783 trzn Streptomyces coelicolor A3(2) Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 0.842337462 0.808671083 0.802674801 0.834717402 0.794382224 0.831836046 0.849643191 334732479 terc Ramlibacter tataouinensis TTB310 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Ramlibacter;species:Ramlibacter tataouinensis; 1.001116609 0.993244113 0.961395692 0.975773625 1.010912763 1.008719926 0.973449705 0.979461024 0.993511305 0.965242836 0.954331986 0.987428774 0.978692987 0.958659968 0.951699491 0.976447117 0.97754275 1.029096947 116200458 axe Chaetomium globosum CBS 148.51 Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 1.032254542 0.98023622 0.97354469 0.988732661 1.035435969 1.015887382 1.004095295 0.94128136 0.987762468 1.013700387 1.029333893 0.973111953 0.967684082 1.012891213 0.949867367 0.978736854 1.019025781 1.037717782 373103564 bphd Cupriavidus basilensis OR16 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus basilensis; 0.909796376 0.964404276 0.893486646 0.898177928 0.88350646 0.953899515 0.886052467 0.89483191 0.935924882 0.921014438 0.908658808 0.903793988 0.873875899 0.888151667 0.809137116 0.862700893 0.915525395 0.954408076 374847618 ppk Nocardia cyriacigeorgica GUH-2 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia cyriacigeorgica; 1.053504156 1.200524859 1.056659236 0.969283553 1.079678153 1.074906799 1.010109522 0.970996046 0.990489798 0.961983239 0.976588278 0.996805336 0.967227871 0.957540906 0.958691807 1.002676147 1.024202538 0.990608231 390569945 bphF1 Burkholderia terrae BS001 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia terrae; 0.780213768 0.844793836 111021480 atzb Rhodococcus sp. RHA1 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 0.892026122 0.985168505 0.867752203 0.858025156 0.896385028 0.874977895 0.873643402 0.829777295 0.878702468 0.912549371 0.83776252 0.879673127 0.805798364 0.849422781 0.772239646 0.817076578 0.865508619 0.883499206 359734160 limeh Rhodococcus pyridinivorans AK37 Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus pyridinivorans; 1.07894199 1.002206929 1.021578785 1.077739505 0.926729853 1.021912186 0.961075949 0.992733062 1.074470612 1.018325005 1.002382429 1.022914009 1.002685545 0.997402211 0.953854408 1.003323738 1.070285745 0.997951 14026766 pcag Mesorhizobium loti MAFF303099 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 0.998303409 1.033006453 0.935054931 1.001348364 0.987640616 0.977897006 0.962231075 0.935405851 0.964045733 0.978316366 0.978771236 0.979124116 0.929664121 0.925447742 0.908368213 0.914728597 0.966356711 0.988993262 94471207 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.165973985 1.118684763 1.137186526 1.140911593 1.125503999 1.156643192 1.079670134 1.121641033 1.120369962 1.093974136 1.127061297 1.157451199 1.097659197 1.071170996 1.089659008 1.09839637 1.139630508 1.117174205 337746268 rgl Paenibacillus mucilaginosus KNP414 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 0.834771996 0.809100879 0.784247413 0.815089544 0.802669275 0.855964326 0.852185107 0.8726319 0.832523712 0.804534095 0.883714719 0.848094602 290961026 amyA Streptomyces scabiei 87.22 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces scabiei; 0.911534896 0.939283364 0.918803977 0.907011975 0.91074548 0.923763062 0.889775992 0.875167173 0.911125495 0.863706992 0.873980684 0.854410554 0.884843839 0.89874837 0.819878978 0.831165106 0.944983228 0.931280305 197723050 rgl Streptomyces pristinaespiralis ATCC 25486 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces pristinaespiralis; 1.149349634 1.065415398 1.076088745 1.07050418 1.145805651 1.200238003 1.083048332 1.067295669 1.038870163 1.066330656 1.061671497 1.067088553 1.070784915 1.063507456 1.23679525 1.106294336 1.154905625 1.226005663 284158780 mannanase uncultured microorganism Carbon Cycling Carbon degradation Hemicellulose 0.91393599 0.874074959 0.903441951 0.91594275 0.963028433 0.916405423 0.899296575 0.936231935 0.90876523 0.858783409 0.907754495 0.950891564 0.853685548 0.843079698 0.886434448 0.992216789 0.883840831 0.896077188 160917583 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.949091799 0.86225513 0.88550631 0.960223637 0.905233704 0.843572514 0.906681276 0.951457687 0.939432552 0.904940586 0.952604668 0.943764335 0.891165016 0.937274581 0.86833001 0.840235662 0.885851028 0.903279969 116270553 nifh uncultured nitrogen-fixing bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.773788008 0.836929043 0.808420588 0.825383605 0.853637074 0.879719003 0.823010574 220696777 cutinase Aspergillus flavus NRRL3357 Carbon Cycling Carbon degradation Cutin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus flavus; 0.815513254 0.844527352 0.806554467 358754255 amyA Granulicella mallensis MP5ACTX8 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Granulicella;species:Granulicella mallensis; 1.284513933 1.288679142 1.257597494 1.261964709 1.262329375 1.271261456 1.223208673 1.240659983 1.25817895 1.275944107 1.271352967 1.283914882 1.235367381 1.197255187 1.208772955 1.200903474 1.27492347 1.22564271 146339296 tfth Bradyrhizobium sp. ORS278 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 1.147882518 1.111450905 1.104829385 1.117935712 1.122552829 1.123061 1.096497688 1.10139069 1.117749402 1.07419325 1.088771409 1.102152754 1.096296642 1.082132684 1.061700375 1.076043735 1.125732424 1.114673095 320096104 amyA Actinomyces sp. oral taxon 178 str. F0338 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 178; 1.12934893 1.118001592 1.12009322 1.104909515 1.101343983 1.120703156 1.098789954 1.098452035 1.114090198 1.099031313 1.061728777 1.085356606 1.079942256 1.065277155 1.02925275 1.04193112 1.130287795 1.111766037 319798033 mer mine drainage metagenome Metal Homeostasis Mercury Detoxification 1.082001213 1.072044756 1.077725716 1.075960341 1.073409944 1.103745041 1.045248209 1.00807127 1.123713163 1.026540031 1.029437232 1.04426612 1.004170105 1.021364435 1.019669135 1.033183091 1.08875927 1.088102372 88702562 nosz uncultured soil bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.77311113 0.810632392 0.856917296 0.827748622 0.810302715 0.809874795 0.791883227 0.802559964 329575915 ara Paraprevotella xylaniphila YIT 11841 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Paraprevotella;species:Paraprevotella xylaniphila; 0.871191221 0.846024614 0.817965896 0.883581077 0.833927556 0.85833393 0.858394823 0.874623183 0.883644161 0.914896098 0.829413311 0.819338006 0.841308152 167563648 pcpb Burkholderia oklahomensis EO147 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia oklahomensis; 1.118594448 1.134285213 1.110836679 1.128074063 1.122226434 1.133532731 1.146454781 1.118547313 1.091100218 1.105860399 1.096618452 1.120041962 1.108899249 1.104187439 1.106705164 1.146799223 1.115834745 1.10442685 392331123 amyA Streptococcus canis FSL Z3-227 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus canis; 1.186803487 1.176528417 1.190647994 1.222593685 1.195909531 1.199051451 1.199334259 1.225582478 1.203628559 1.163155142 1.150628351 1.192220029 1.175737678 1.12675376 1.148684608 1.150805115 1.174620082 1.149862435 332372360 rubisco uncultured bacterium Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria; 0.771346264 0.784321038 409358983 alkk Dietzia alimentaria 72 Organic Remediation Others NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dietziaceae;genus:Dietzia;species:Dietzia alimentaria; 0.787278684 0.815144738 0.818873442 0.820095232 0.798815198 0.800015353 0.812529042 0.801598117 182411857 mannanase Opitutus terrae PB90-1 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 1.692163202 1.668892733 1.6560953 1.642927788 1.66316639 1.672004552 1.638986102 1.64368808 1.642762369 1.628638437 1.652653665 1.680572054 1.61971254 1.60429981 1.640063321 1.640846561 1.666539172 1.606996894 44916507 endopolygalacturonase_fungi Diaporthe helianthi Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Diaporthales;family:Diaporthaceae;genus:Diaporthe; 1.020325891 1.022337922 0.962700731 1.025680147 0.995802138 1.038182395 0.976515878 1.001762065 0.974054335 1.025370702 1.009958615 0.994916165 0.9719201 0.978688921 0.911149104 0.974916523 1.017251561 1.013560757 298537452 amyA Moorella thermoacetica ATCC 39073 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Moorella;species:Moorella thermoacetica; 0.881499971 0.930264755 0.907895161 0.918926556 0.883013016 0.910258877 0.873790366 0.877435768 0.889189018 0.897614679 0.88319216 0.854890634 0.82257713 0.889835252 0.926679864 71849040 bphF1 Dechloromonas aromatica RCB Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Dechloromonas;species:Dechloromonas aromatica; 1.189491538 1.197359109 1.259315715 1.186041471 1.182896999 1.155195799 1.15219717 1.175526483 1.230856922 1.1751062 1.152576144 1.212493608 1.104538006 1.159358853 1.107102984 1.155468097 1.155636365 1.140537948 307218301 amyA Halomonas elongata DSM 2581 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas;species:Halomonas elongata; 1.087230796 1.095914047 1.082067566 1.070590252 1.101332615 1.094558848 1.044343159 1.093968011 1.05853667 1.098561623 1.082696972 1.047034855 1.023770774 1.047188998 1.005037108 1.024305081 1.048435369 1.074529471 163794918 hbh alpha proteobacterium BAL199 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 1.047619356 1.032388326 1.061338424 1.010252944 0.996137233 1.024409493 0.997469986 1.002330849 1.028492534 1.034472471 1.010685703 0.975196052 0.965096375 0.977546649 0.929935747 0.981567535 1.024418825 1.060829153 156191723 urec Methylobacterium chloromethanicum CM4 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium chloromethanicum; 1.234206315 1.230372102 1.201173911 1.213916075 1.200214444 1.252805305 1.170054039 1.194024217 1.194834453 1.205036961 1.201195481 1.18702942 1.195794822 1.202569301 1.13007888 1.196673268 1.220276145 1.235014034 329850182 xylanase Asticcacaulis biprosthecum C19 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis biprosthecium; 1.13265204 1.060275797 1.110601854 1.117951609 1.061144826 1.035623864 0.995026077 1.032209821 1.118344714 1.049493786 1.082483714 1.052174794 1.079088455 1.056224781 0.999854041 1.036903449 1.138318139 1.056335463 88062433 dsrB uncultured Desulfohalobiaceae bacterium Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfohalobiaceae; 1.280149473 1.213150579 1.177133897 1.214859409 1.203517423 1.233025288 1.197847807 1.200941059 1.216628036 1.176670278 1.243166789 1.200221238 1.221098698 1.19003552 1.198782143 1.156853696 1.226192407 1.158931701 151302120 aps_apra Thermodesulfobacterium commune Sulfur adenylylsulfate reductase NA superkingdom:Bacteria;phylum:Thermodesulfobacteria;class:Thermodesulfobacteria;order:Thermodesulfobacteriales;family:Thermodesulfobacteriaceae;genus:Thermodesulfobacterium;species:Thermodesulfobacterium commune; 0.923723986 0.935910118 0.87026844 0.924713431 0.883799899 0.961095495 0.86362314 0.870980149 0.932693304 0.912360568 0.876293228 0.917818023 0.858535905 0.879555118 0.836871733 0.842011439 0.942056808 0.932226743 283784527 pme Citrobacter rodentium ICC168 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter rodentium; 1.028865896 1.087726583 1.053899095 1.020172196 1.034387114 1.063527472 0.995338035 1.007932827 1.0099816 0.981029092 0.981096977 1.022510055 0.988543636 0.989885609 0.986145024 1.023580115 1.122731985 1.002933174 359731526 merb Rhodococcus pyridinivorans AK37 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus pyridinivorans; 0.964819177 0.998302803 0.896784204 0.983515174 0.999687207 0.969046776 1.008978826 0.946856418 0.966311914 0.970632768 1.003960063 0.989030382 0.928901362 0.875564636 0.856818631 0.837762734 0.902370564 83840580 soxY Sulfitobacter sp. NAS-14.1 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 0.854397184 0.820681163 0.868224453 0.911328026 0.807173082 0.849595422 0.831449599 0.877263826 0.869472823 0.862075196 0.817141801 0.886273619 0.805321767 0.840797744 0.84263275 0.875533178 0.860634559 302405513 pel_Cdeg Verticillium albo-atrum VaMs.102 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticilium;species:Verticillium albo-atrum; 0.978035487 0.939466785 0.958967803 0.956138652 0.903357718 0.844449897 0.85939514 0.9505304 0.96629576 0.88799606 0.944509862 0.926025569 0.847211411 0.869646011 0.910924643 0.864174403 0.943298862 0.937754735 73534169 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 1.069036429 1.074452838 1.042188473 1.096101864 1.054585154 1.082164331 1.024861748 1.057659813 1.046649743 1.087755784 1.045612623 1.100889571 1.041721177 1.036481298 1.020858232 1.081896093 1.06330266 1.087754411 377570755 cdh Gordonia terrae NBRC 100016 Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia terrae; 0.955656659 1.006951404 0.960492637 0.971171284 0.9436935 0.980560433 0.90506751 0.937085359 0.863314356 0.937676303 0.868545358 0.934833424 0.906083417 0.912832767 0.891155521 0.906343304 0.954837033 1.018792894 388551611 alkj Pseudomonas chlororaphis O6 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas chlororaphis; 0.853044693 0.859129895 0.864672576 0.903613528 0.90449329 0.822441801 0.883280007 0.863552258 1.108783852 0.861927664 0.86085434 0.8892142 0.874002453 0.81552514 0.808476609 0.840022044 0.883643477 0.889910855 398957292 poba Pseudomonas sp. GM33 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.799745133 0.824563928 0.790134992 0.812178246 45386169 narg unidentified bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.046765837 1.075129036 1.030066569 1.022350372 1.018699208 1.069874343 1.023604609 1.070178377 1.016075734 1.061159962 1.005664378 1.025318606 1.047505407 1.06437684 0.987243378 1.028393306 1.073236016 1.07660993 353194941 arsc Halobacterium sp. DL1 Metal Homeostasis Arsenic Detoxification superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halobacterium; 1.26959612 1.24004827 1.248322525 1.23545953 1.245558802 1.272818495 1.241337112 1.22944348 1.263835152 1.236475574 1.252858505 1.239020638 1.221003117 1.191939494 1.225812214 1.232880659 1.248130849 1.241499563 115372537 linc Stigmatella aurantiaca DW4/3-1 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 0.886059046 0.863319384 0.91827488 0.888806223 0.908172827 0.853405302 0.899294967 0.914194367 0.864901849 0.870686494 0.902928834 0.885594893 0.804409511 0.799344587 0.827021336 0.835010623 0.889186222 0.885984316 261857093 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.897012636 0.871741547 0.882488285 0.830996114 0.883767156 0.849859567 0.872062861 0.885164164 0.889306846 0.865048317 0.816614112 0.837635607 0.830076807 0.83337261 0.898088839 0.933190922 319805038 TIM Sutterella wadsworthensis 3_1_45B Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Sutterellaceae;genus:Sutterella;species:Sutterella wadsworthensis; 1.306380072 1.27377781 1.268864261 1.311954053 1.257659473 1.326145403 1.276944425 1.287119679 1.28454239 1.275521996 1.296337324 1.285134062 1.230479975 1.249050048 1.245262156 1.249627412 1.30801888 1.27274755 271964814 amyA Streptosporangium roseum DSM 43021 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 0.982044062 0.932284726 0.886344048 0.908653149 0.889621852 0.923093323 0.91587772 0.9047009 0.930233275 0.916385126 0.891397843 0.900489203 0.881727939 0.928257494 0.83735118 18312596 AACT_DiC4HB Pyrobaculum aerophilum str. IM2 Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum aerophilum; 1.05091551 0.991189194 0.997379019 1.04514745 1.030521302 0.983729179 0.95889569 1.000531346 1.000359661 1.013591802 1.006313072 1.060512392 0.989998529 1.023427832 0.926189155 0.983958936 1.034740527 1.002564484 115359960 tfth Burkholderia cepacia AMMD Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ambifaria; 1.106818494 1.101494448 1.101314043 1.130138147 1.115243482 1.107940499 1.09410579 1.127243377 1.129105394 1.098316771 1.094240421 1.110269462 1.066592123 1.058145252 1.070654999 1.071706371 1.129359665 1.118182942 78494567 rubisco Rhodopseudomonas palustris BisB18 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 1.011057349 0.983270965 0.997625014 1.010273217 0.964339431 0.979811464 0.937832234 0.971416355 0.978081554 0.961956658 0.973648803 0.986808333 0.942207878 0.966482058 0.963049863 0.992284906 1.033256081 0.993781498 326949820 cueo Pseudonocardia dioxanivorans CB1190 Metal Homeostasis Copper Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Pseudonocardia;species:Pseudonocardia dioxanivorans; 0.965582942 0.961281472 0.980784848 0.984284205 0.996639191 0.978687444 1.003550387 0.99606651 0.976772644 0.921553252 0.955331618 0.95827897 0.921321535 0.8977042 0.908533989 0.910315032 0.986348095 1.003631662 357939092 pcpe Burkholderia sp. YI23 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 0.763562292 0.794283201 0.83957148 0.788800305 0.808044948 0.769149081 0.82836413 0.829308628 237746764 TIM Oxalobacter formigenes HOxBLS Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Oxalobacter;species:Oxalobacter formigenes; 1.14804021 1.11599865 1.096479094 1.122650493 1.091176595 1.092635148 1.060941814 1.096250576 1.116803345 1.10090712 1.115879908 1.143109601 1.068537715 1.062991096 1.066965526 1.075818984 1.10997923 1.109045519 116688011 mcra Methanosarcinaceae archaeon ZC-1 Carbon Cycling Methane Methanogenesis superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methermicoccaceae;genus:Methermicoccus; 0.889234893 0.803633296 0.76288893 0.873895853 296130017 amyA Cellulomonas flavigena DSM 20109 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas;species:Cellulomonas flavigena; 1.40608519 1.39413887 1.341874423 1.347694653 1.329835746 1.419236749 1.32671918 1.334533456 1.327786146 1.34560765 1.336054629 1.323867961 1.31449642 1.35247866 1.310646337 1.341225594 1.370621699 1.358939236 21227351 rubisco Methanosarcina mazei Go1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosarcinaceae;genus:Methanosarcina;species:Methanosarcina mazei; 0.807569532 0.903696146 0.824803403 0.811473903 0.835500762 0.829718799 0.796368063 0.825080716 0.88400169 109632429 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.928447756 0.875034835 0.976350449 0.9811765 0.902356452 1.000298844 0.941638024 0.985663669 0.96207673 0.905021589 0.955554315 0.955317088 0.876184182 0.885363993 0.903952349 0.874688474 0.911098535 0.885449821 78516810 urec Bradyrhizobium sp. BTAi1 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.90977231 0.884225692 0.845425782 0.963897068 0.881483762 0.852996259 0.851110348 0.915171232 0.877260549 0.836175051 0.887946808 0.900684368 0.848795296 374922697 arra uncultured bacterium Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 0.81250518 0.837120389 0.858060173 0.798420981 0.829323046 0.854188751 0.859030912 0.827156007 0.832546586 0.882403099 0.795882342 0.778090384 0.821906231 237811237 pcpe Burkholderia pseudomallei MSHR346 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia pseudomallei; 0.921354687 0.907872108 0.949036014 0.928066288 0.936453723 0.919871162 0.905883313 0.934176734 0.898866707 0.891498107 0.879895946 0.899899033 0.90076001 0.853127368 0.888919922 0.883478631 0.927134952 0.91572003 386775366 amyA Brachybacterium paraconglomeratum LC44 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dermabacteraceae;genus:Brachybacterium;species:Brachybacterium paraconglomeratum; 1.028747274 1.018069752 0.999602849 1.046870907 0.967841989 1.011681438 0.9824601 1.027459687 1.026300994 1.021174054 1.021530475 1.01834024 0.960253187 1.014955397 0.971690965 0.985612894 1.034967463 1.008569904 262100182 pectin_lyase_Oomycetes Phytophthora infestans T30-4 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;order:Peronosporales;genus:Phytophthora;species:Phytophthora infestans; 1.273491524 1.236103577 1.203926765 1.21289652 1.19660047 1.234293836 1.191442429 1.23396746 1.215596166 1.205353998 1.188939725 1.217542014 1.199020358 1.196772997 1.150532744 1.213992282 1.250263632 1.224499726 84495000 ppx Janibacter sp. HTCC2649 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Janibacter; 1.088830465 1.077527075 1.066103741 1.085818409 1.03159438 1.057081143 1.015404614 1.04363189 1.077539366 1.05704122 1.03078161 1.049937512 1.022493356 1.025452235 1.014065392 1.041722954 1.112682867 1.04429215 2385380 sqr Rhodobacter capsulatus Sulfur Sulfide Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter; 0.856823128 0.866656905 0.844355543 0.861506594 0.87021797 0.891696656 0.8547512 0.795571565 0.853410252 0.867343873 0.878826882 0.84255813 312199439 xylanase Frankia sp. EuI1c Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 1.207862098 1.091891157 1.10107744 1.128637376 1.129138635 1.144119897 1.132168598 1.157659087 1.131465616 1.10473446 1.12444915 1.147362282 1.128993048 1.072048018 1.062557656 1.104029753 1.156327158 1.127213966 222440772 nhh Labrenzia alexandrii DFL-11 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia alexandrii; 1.214837643 1.189684982 1.197482302 1.239514918 1.208710335 1.189545322 1.201806929 1.222436111 1.203084407 1.1826862 1.227927721 1.254271259 1.189943163 1.14143206 1.176255907 1.206611684 1.207964226 1.163050552 324999966 limeh Pseudonocardia sp. P1 Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Pseudonocardia; 0.819404157 0.900130991 0.88426468 0.861529545 0.890133138 0.903163128 0.869613143 0.857971865 0.881551647 0.897387275 0.863619881 0.817916909 0.796696474 0.918317643 0.875005968 295106626 dsra Gordonibacter pamelaeae 7-10-1-b Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Gordonibacter;species:Gordonibacter pamelaeae; 0.883830899 0.916940095 0.91381134 0.90398417 0.881574149 0.939739564 0.919303817 0.95433563 0.860847113 0.938732534 0.857605644 0.875950663 0.851768591 0.867165227 0.793475191 0.885928251 0.908476671 284041906 one_ring_23diox Conexibacter woesei DSM 14684 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Solirubrobacterales;family:Conexibacteraceae;genus:Conexibacter;species:Conexibacter woesei; 1.184928841 1.206192071 1.184153183 1.16210165 1.141639161 1.177107152 1.150834104 1.159757419 1.137042566 1.137138731 1.147205518 1.148979016 1.133936574 1.155046844 1.110528657 1.146528311 1.173013229 1.178821079 310795264 rgl Glomerella graminicola M1.001 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Glomerellaceae;genus:Colletotrichum;species:Colletotrichum graminicola; 0.858305314 0.795686328 221723349 cysI Agrobacterium radiobacter K84 Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 0.917821901 0.873758791 0.91292446 0.942890093 0.942003033 0.939277648 0.931299473 0.932405249 0.916518501 0.908678974 0.913073747 0.93309114 0.94346084 0.87264027 0.839858578 0.851530582 0.97275493 0.883723195 381375631 chitinase Actinoplanes missouriensis 431 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes;species:Actinoplanes missouriensis; 0.82583821 0.790494236 1.025544374 0.86538836 0.894442594 0.843278621 0.884189919 0.849454306 0.849655327 1.016356268 0.813922825 0.802242096 0.820304371 0.824872744 0.84484582 126708314 phn Sagittula stellata E-37 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 0.82735418 0.871207415 0.823734129 0.816425544 0.817452854 0.850362149 0.81479336 0.845215733 0.859273521 0.796764103 0.822702146 0.812216698 0.82224271 0.867642989 46139257 rgl Gibberella zeae PH-1 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Fusarium;species:Fusarium graminearum; 1.104079985 1.096821785 1.144540623 1.180108202 1.140388059 1.132589627 1.15376025 1.147984106 1.192078381 1.140280433 1.097397615 1.145974987 1.135177475 1.118297556 1.146436834 1.123067056 1.163429648 1.122159846 226308285 urec Rhodococcus erythropolis PR4 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 1.030177101 1.052972027 1.051458014 1.040268894 1.03539266 1.069191337 1.021583282 1.048451722 1.018045548 1.007999269 1.073703099 1.039380375 0.997331023 0.999668462 1.030855642 1.03903184 1.051194594 1.038902483 361060462 amyA Niastella koreensis GR20-10 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;genus:Niastella;species:Niastella koreensis; 1.151823831 1.098121641 1.112121195 1.267719192 1.044408989 1.064987384 1.015632854 1.069882599 1.111342618 1.078414132 1.056223184 1.096281376 1.04327039 1.047704999 0.98235741 1.02599813 1.089877959 1.076944098 223886507 phenol_oxidase uncultured fungus Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi; 0.798715912 0.839120466 0.840975717 0.835974036 0.884048747 0.841115955 0.876341543 0.839738659 0.782412585 0.771743016 0.847347092 0.838630206 241320734 cysJ Neisseria flavescens SK114 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria flavescens; 1.539177054 1.470633056 1.467406709 1.515175125 1.424902603 1.501164123 1.420032729 1.463581381 1.472917981 1.44274976 1.446451845 1.444540381 1.412481236 1.41160753 1.418127535 1.462183709 1.533772989 1.456453356 254464129 SoxC Rhodobacterales bacterium Y4I Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 1.109874527 1.083038386 1.090301237 1.105488282 1.08455603 1.107428023 1.069793002 1.113744683 1.082097518 1.043269025 1.097258929 1.091159074 1.058700937 1.029525243 0.976195982 1.077025104 1.12345754 1.080304722 219864111 CsoS1_CcmK Cyanothece sp. PCC 7425 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 0.840927739 0.801561973 0.833348603 0.849201365 0.847259169 0.828336885 0.818872814 0.861816153 0.856521434 332662245 amyA Haliscomenobacter hydrossis DSM 1100 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Saprospiraceae;genus:Haliscomenobacter;species:Haliscomenobacter hydrossis; 1.014948898 1.016260702 1.019765166 1.010090786 0.935741357 1.024492492 0.944424684 1.015756737 1.02601127 0.969872786 0.952684185 0.972585574 0.939210221 0.920034698 0.863282678 0.952996628 0.99461185 1.068903135 403512052 dehh Nocardiopsis alba ATCC BAA-2165 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Nocardiopsis;species:Nocardiopsis alba; 0.970389468 0.95776139 0.984842906 0.920124508 0.945675937 0.96112398 0.912565431 0.89007825 0.916540179 0.975459838 0.931848681 1.00611035 0.907218794 0.906009747 0.903697699 0.925976195 0.971245689 0.942945025 118744903 nifh Geobacter lovleyi SZ Nitrogen Nitrogen fixation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter lovleyi; 1.128663944 1.19575624 1.077154962 1.143061582 1.077294188 1.136593836 1.084537409 1.155138963 1.095729511 1.05582792 1.064315907 1.093949859 1.069356764 1.092361084 1.093408103 1.077882961 1.103280979 1.083521483 350561731 arylest Thioalkalivibrio thiocyanoxidans ARh 4 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio;species:Thioalkalivibrio thiocyanoxidans; 1.122067812 1.11718846 1.056587796 1.150193513 1.091300563 1.113309682 1.057868776 1.114485852 1.125128244 1.049841261 1.094810655 1.10091618 1.07988462 1.080490539 1.046472474 1.050095167 1.121391154 1.086551119 363416112 ben_bcla Acidovorax sp. NO-1 virulence NA NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 0.901985822 0.867289527 0.8804707 0.86859119 0.8890062 0.858683856 0.889279617 0.880437189 0.880852105 0.880551872 0.848440948 0.840121334 0.81704943 0.809632554 0.814150852 0.814217512 33391483 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.963854472 0.96337794 1.086477889 1.001053682 0.993056443 1.039708536 0.958170852 0.963621922 1.014870674 1.017285426 0.990772748 0.954033329 0.977868568 0.978057219 1.011460019 0.946214614 1.005472021 1.010385163 373853657 ara Opitutaceae bacterium TAV5 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 0.951112576 0.90637717 0.962420346 0.957341611 0.909046785 0.927432383 0.920941506 0.9663909 0.965513569 0.910088555 0.925961962 0.91681239 0.919060678 0.971527011 0.902579501 0.913609571 0.957889862 0.94731863 389847255 glucoamylase Haloferax mediterranei ATCC 33500 Carbon Cycling Carbon degradation Starch superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloferax;species:Haloferax mediterranei; 0.841567722 0.82077192 0.906183637 0.80343882 0.829451634 1.149972534 0.837320082 325545828 xyla Xanthomonas gardneri ATCC 19865 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas gardneri; 0.824729821 0.812568723 0.804740225 0.786382709 0.809229047 0.829694183 0.807879137 0.806224791 0.858448315 78060255 chnb Burkholderia sp. 383 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 1.243534477 1.235906248 1.232007303 1.253976841 1.207831121 1.23928592 1.201982244 1.216050994 1.216285487 1.232204336 1.240195846 1.23727586 1.210881235 1.21414608 1.199659197 1.213931118 1.233306822 1.206767045 381151185 cysJ Methylomicrobium album BG8 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylomicrobium;species:Methylomicrobium album; 0.813146487 0.833041803 0.826406309 0.835897094 0.864536785 0.820011002 0.873638669 0.835347797 0.873131948 251843343 arsc Paenibacillus sp. oral taxon 786 str. D14 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus sp. oral taxon 786; 0.901986798 0.958081184 0.917104114 0.960217611 0.936776053 0.926887308 0.887513374 0.925382743 0.870185545 0.931502905 0.852437456 0.931429502 0.904323798 0.905816964 0.849433693 0.893494434 0.910715107 0.953401852 60476352 dsrB uncultured bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.212379998 1.201147817 1.180076458 1.242508254 1.197480149 1.221772252 1.177645163 1.190688971 1.181330457 1.139509148 1.148847094 1.19117485 1.16123627 1.134614482 1.159143136 1.165619598 1.225093608 1.170662662 220925115 amyA Methylobacterium nodulans ORS 2060 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 1.211732907 1.220590189 1.214900986 1.20502875 1.192082676 1.232207648 1.205201421 1.203142174 1.194989134 1.200729561 1.180259487 1.200945673 1.182920626 1.144010656 1.209600184 1.141804507 1.221910987 1.463525715 195975313 cellobiase Streptococcus equi subsp. zooepidemicus MGCS10565 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus equi; 1.047226548 0.935943027 0.881525565 0.85035786 1.001293372 1.123778848 0.989328838 0.859312574 0.916439038 1.053931369 1.013623254 0.929098458 1.010264507 1.088040998 0.912386586 0.953048027 1.112215869 1.026812662 238015689 arra uncultured bacterium Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 0.834198593 0.826524599 0.804805671 0.858731591 0.841584828 0.807898004 0.84013581 0.817861179 0.803127379 0.783928355 0.840976556 0.8107521 222106170 vdh Agrobacterium vitis S4 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium vitis; 1.082746263 1.004791837 0.940869881 0.972434467 0.9475522 0.856977237 0.948544418 1.062397662 1.008437678 0.83861191 0.953761329 0.986984974 0.866038461 0.854186177 0.842627435 0.869061236 0.938575492 0.957912484 169627729 bphF1 Mycobacterium abscessus Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 1.140442117 1.112812293 1.089402844 1.07249372 1.061080752 1.099818364 1.118727876 1.212726374 1.193559266 1.102007733 1.091632749 1.079094368 1.083484355 1.081536976 1.25287305 1.204036107 1.155870411 1.205171834 226363706 pcpe Rhodococcus opacus B4 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus opacus; 0.976340139 0.90202722 0.979871474 0.983865496 0.848599693 0.927866473 0.872680741 0.957221789 1.009952457 0.914555118 0.88627568 0.941221456 0.911158974 0.867451077 0.87480015 0.885534546 1.031192525 0.934706681 358752123 amyA Granulicella mallensis MP5ACTX8 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Granulicella;species:Granulicella mallensis; 0.914986953 0.964586092 1.168818713 0.946420853 0.91871439 0.971258093 0.907550678 0.872523641 0.940959137 0.989153362 0.911849419 0.92265645 0.906846767 0.951099007 1.012304564 0.937374341 0.966414119 1.007052271 167360769 pcpe Rhizobium leguminosarum bv. trifolii WSM1325 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 1.106751586 1.129078831 1.138071888 1.109077835 1.107114315 1.145634003 1.093287162 1.089111987 1.11358958 1.13042674 1.130542623 1.103238903 1.09613091 1.082997317 1.057380626 1.07778394 1.147257801 1.13559585 220909871 tktA Cyanothece sp. PCC 7425 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 0.948395484 0.937000457 0.951887521 0.949075442 0.996226227 0.931882754 1.0042947 0.979748048 0.910751101 0.973405333 0.972519048 0.979825336 0.979581588 0.917310648 0.873014638 0.916821899 1.007020609 0.969396633 340793642 amyA Corynebacterium variabile DSM 44702 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium variabile; 1.27638071 1.285354757 1.261996539 1.253160639 1.237430349 1.293981535 1.222446697 1.25655819 1.262654724 1.280199095 1.223409662 1.243320985 1.241020469 1.250684607 1.240083219 1.232614593 1.252044522 1.279094067 357408084 vgb Streptomyces cattleya NRRL 8057 = DSM 46488 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces cattleya; 1.011532971 0.957784198 1.006426718 0.980024648 0.926177019 0.920345755 0.863747163 0.931403602 0.993292326 0.935870056 0.954096771 0.921633497 0.971447611 0.872651972 0.872285241 0.906208696 0.995995681 0.910659165 315120559 terc Parascardovia denticolens DSM 10105 = JCM 12538 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Parascardovia;species:Parascardovia denticolens; 1.415710737 1.361989419 1.389875334 1.386051052 1.354916044 1.389935787 1.352490243 1.381027412 1.388300447 1.376517247 1.378596872 1.379445627 1.339544762 1.312595474 1.337995011 1.348493854 1.390703577 1.326853867 121495548 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.821447026 0.84828635 0.833002337 0.809036405 0.829976153 0.83991442 0.860114618 0.816709446 0.787226495 0.856723902 0.806949677 0.811730485 0.865294948 183217828 amyA Bifidobacterium animalis subsp. lactis HN019 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium animalis; 1.007168908 0.980894472 0.934762957 1.004943074 0.900114418 0.971258093 0.899379066 0.946590855 0.982784782 0.960888036 0.921695782 0.949808216 0.901882204 0.869471027 0.882184065 0.909110044 0.984289424 0.985293368 113526567 bphF1 Ralstonia eutropha H16 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 0.852835352 0.804326865 0.856037141 0.872859 0.835704892 0.814646745 0.828165232 0.877487467 90105593 PRI Rhodopseudomonas palustris BisB18 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 0.748359929 0.818078041 317122441 mer Thermaerobacter marianensis DSM 12885 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XVII. Incertae Sedis;genus:Thermaerobacter;species:Thermaerobacter marianensis; 1.107306262 1.059805871 1.104378791 1.151680286 1.112131466 1.098710183 1.134399606 1.150682239 1.15526913 1.036898937 1.095959173 1.098323542 1.099179219 1.001634924 1.088799444 1.062734952 1.131212478 1.064414481 209401598 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.213338075 1.183611435 1.145403186 1.216608598 1.13870182 1.143403066 1.152281667 1.174280164 1.195606922 1.14333331 1.142449372 1.170963502 1.146611815 1.099070969 1.113075636 1.132476105 1.1840368 1.134822782 336178840 mannanase Frankia symbiont of Datisca glomerata Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 1.151972321 1.155082027 1.116791589 1.152125396 1.1543119 1.119698122 1.136540248 1.128515904 1.127768695 1.154537824 1.140062568 1.152120687 1.105740459 1.113615991 1.09569124 1.118575781 1.122602427 1.141140939 363415665 PRI Acidovorax sp. NO-1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 1.171759642 1.182795796 1.129668244 1.114289729 1.139035387 1.15665387 1.090848619 1.117972954 1.122399319 1.161363293 1.12020534 1.115436524 1.097672325 1.113461971 1.0849166 1.106230182 1.189196311 1.157218472 780709 nifh unidentified marine eubacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.979844341 1.066489517 0.970825505 0.984076769 0.959917296 0.976935913 0.954614754 0.959718141 0.954381326 0.960389749 0.944751869 0.960905819 0.951936507 0.948645237 0.935123874 0.961315216 1.001455958 0.968504534 358243376 cutinase Gordonia araii NBRC 100433 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia araii; 1.03519546 1.003238637 1.021446218 1.000260341 0.985418524 1.014500137 1.021796181 1.030819914 0.979801533 1.022607018 0.993782481 1.008544578 0.958464419 0.97519727 0.956021858 0.973977708 1.041065082 1.042076856 284028538 chitinase Kribbella flavida DSM 17836 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Kribbella;species:Kribbella flavida; 0.836439489 0.937208827 0.811941902 0.869905127 0.905506486 0.920742652 0.864152214 0.918129573 0.863391995 0.870920976 0.902861269 0.86000145 0.882822016 0.875006952 0.911139048 0.886475009 0.930527271 262201881 amie Gordonia bronchialis DSM 43247 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia bronchialis; 1.006863483 1.035311518 0.946859608 0.93682016 0.945356695 1.04503053 0.913952132 0.937234133 0.923930315 0.947295822 0.909194645 0.966088284 0.881337872 0.934035078 0.860344922 0.95592114 1.086131527 0.987847304 254271889 tfda uncultured bacterium Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria; 1.048665539 1.079064143 0.988916574 1.06097384 1.026645734 1.086345456 1.039228554 1.056274719 1.053964073 1.055881048 1.026033972 1.048372054 1.01944153 1.012616486 1.017251816 1.04532524 1.048509265 1.038447209 192764222 nifh uncultured prokaryote Nitrogen Nitrogen fixation NA 0.822732583 0.882562345 0.822433178 0.818060789 0.810348966 0.826644888 0.844764729 0.9113942 0.834959832 0.823233787 150964166 amyA Pseudomonas aeruginosa PA7 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 0.852588798 0.783824255 0.820001874 0.788767339 0.846697331 0.807373456 0.782363614 0.826014576 321165351 acetylglucosaminidase Granulicella tundricola MP5ACTX9 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Granulicella;species:Granulicella tundricola; 0.925622451 0.961076985 0.900986693 0.911219493 0.847225175 0.913653115 0.918003567 0.899597612 0.913406491 0.909010347 0.869967248 0.91421493 0.876238351 0.84474111 0.854738392 0.902926626 0.925898131 0.95025371 347530930 ara Roseburia hominis A2-183 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Roseburia;species:Roseburia hominis; 0.820656602 0.847404183 0.767890233 0.821439898 319646494 cysJ Bacillus sp. BT1B_CT2 Sulfur Reduction NA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 0.937099877 1.013835827 1.117548417 1.000440602 1.062009714 1.109969085 0.989564187 1.013483591 1.059058358 0.897944889 0.959479724 0.973750872 0.939247882 0.930314744 0.926332355 1.098114612 1.04538192 0.984792186 327177916 fthfs uncultured bacterium Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria; 1.046724568 1.094144228 1.060571449 1.088117424 1.094832374 1.126747864 1.1025428 1.099723859 1.068741169 1.142406579 1.081578166 1.089335606 1.088630241 1.085520869 1.042294836 1.100254234 1.103222065 1.101751022 69276911 fthfs Mesorhizobium sp. BNC1 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 1.040971096 1.009019045 0.998518249 1.04023713 1.01300458 1.01437171 1.008989133 1.026060214 1.006267977 0.989253609 1.00305567 1.014004845 1.007181954 0.967976374 0.963611696 0.978794119 1.042779206 0.99083644 78356157 aps_apra Desulfovibrio desulfuricans subsp. desulfuricans str. G20 Sulfur adenylylsulfate reductase NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio alaskensis; 0.849000433 0.818215994 0.818365157 0.839744623 0.939577356 0.806826527 226834711 xylanase Actinomyces urogenitalis DSM 15434 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces urogenitalis; 0.864764341 0.854678673 0.891529021 0.832908657 0.868162284 0.890071761 0.889021563 0.867660044 0.874878531 0.871010656 0.861095975 0.85925031 0.857674424 0.844182005 0.804064553 0.866882998 0.900984034 296283048 ppx Citromicrobium bathyomarinum JL354 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Citromicrobium;species:Citromicrobium bathyomarinum; 1.198710699 1.202946442 1.19541496 1.215709692 1.199561267 1.228807677 1.218451262 1.188767094 1.200830526 1.211068484 1.212620915 1.225268701 1.173016401 1.181419258 1.146711232 1.181862465 1.182114596 1.185405334 171464945 mer Dyella sp. Is-D134 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Dyella; 0.898751549 0.901846583 0.896785619 0.922313095 0.88583924 0.862049359 0.866655141 0.867037999 0.91480049 0.951722827 0.935230815 0.935575908 0.828499997 0.817974598 0.81801716 0.837273249 0.933813587 0.926709217 390569827 B_lactamase_A Burkholderia terrae BS001 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia terrae; 0.859081013 0.872912265 0.860295043 0.849859745 0.863472944 0.839078754 0.819362189 0.853858477 0.815521668 0.837934999 0.867525156 0.851973061 212009768 amyA Thermococcus onnurineus NA1 Carbon Cycling Carbon degradation Starch superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Thermococcus;species:Thermococcus onnurineus; 1.100151351 0.988776381 1.183021882 1.016676991 1.055688159 1.032099303 0.97023738 0.967250178 1.107180194 1.0453064 1.128943079 1.087146112 0.974358492 0.910848827 1.066304873 1.052892757 1.050785947 1.053748607 56553604 phospholipase_C_fungi Cryphonectria parasitica Carbon Cycling Carbon degradation Phospholipids superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Diaporthales;family:Cryphonectriaceae;genus:Cryphonectria; 1.205892683 1.171358681 1.16472803 1.22096416 1.141238996 1.17203979 1.147210997 1.185079243 1.200625643 1.164766105 1.153515115 1.170874682 1.110215803 1.120791095 1.113759585 1.136295448 1.189343302 1.163578978 392185935 mhpa Mycobacterium massiliense 2B-0912-R Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium abscessus; 1.278343609 1.233166608 1.235376978 1.21757092 1.200627064 1.205698337 1.172931378 1.165111766 1.218517393 1.221804046 1.210865951 1.211599159 1.198449734 1.196032399 1.176306436 1.208432779 1.242931322 1.235446547 34494872 urec Haloarcula vallismortis Nitrogen Ammonification NA superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloarcula; 0.781831977 0.814855452 0.824031195 0.824396185 0.835084612 0.804531657 0.964890751 0.843990998 0.859517114 71556145 mdld Pseudomonas syringae pv. phaseolicola 1448A Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas savastanoi; 1.184691916 1.108004693 1.14256451 1.160041916 1.118988147 1.129368137 1.148670026 1.143619032 1.145591133 1.16079252 1.155810434 1.148538369 1.129562465 1.147848856 1.109508225 1.147297014 1.138084262 1.140922327 212171500 alkb uncultured bacterium Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria; 1.092623752 1.067004523 1.017935451 1.055791942 1.007043717 1.048035288 1.00391688 1.050743022 1.039197959 1.044924435 1.015604917 1.062751785 0.972220471 1.001057766 0.950632668 1.015640654 1.056526869 1.054437938 346223725 xylanase Anaerophaga thermohalophila DSM 12881 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Marinilabiliaceae;genus:Anaerophaga;species:Anaerophaga thermohalophila; 0.82668439 0.847127581 0.800378024 0.82796101 0.799412295 0.804525146 0.799718009 0.811034667 154350630 amyA Bacillus amyloliquefaciens FZB42 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus amyloliquefaciens; 0.891771924 0.911369868 0.857522152 0.884723505 0.861811312 0.928326572 0.875187873 0.887192596 0.900822801 0.906594599 0.843582017 0.883273852 0.851208748 0.890932029 0.858454505 0.864727548 0.915755966 0.976821241 292815637 IcfA Achromobacter piechaudii ATCC 43553 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter;species:Achromobacter piechaudii; 1.124808887 1.155005779 1.08936171 1.129915832 1.070785986 1.113516055 1.084599036 1.091796709 1.115562884 1.112757518 1.067060525 1.114027536 1.076372888 1.077538211 1.068971224 1.077942195 1.120743025 1.126162854 237879427 B_lactamase_A Burkholderia glumae BGR1 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia glumae; 0.899590764 0.8915342 0.931308042 0.880764002 0.815103783 0.913895665 0.856276761 0.885991749 0.889431902 0.887504586 0.895490062 0.808875529 0.909134645 0.977141287 0.858860655 0.956203089 0.94008481 282950380 amyA Citrobacter rodentium ICC168 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter rodentium; 0.839354672 0.869529658 0.905355211 0.877561456 0.83725111 0.852617771 0.854163833 0.853600412 0.872159242 0.856481287 0.872385812 0.837984599 0.851774888 0.834637939 0.850273128 0.837346202 0.857524756 0.875148749 291436747 bphd Streptomyces ghanaensis ATCC 14672 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces ghanaensis; 1.140539675 1.139653749 1.085458819 1.152239607 1.090157706 1.1567234 1.049774839 1.078147313 1.076600323 1.098486103 1.079178 1.101203737 1.06399175 1.127854176 0.982567777 1.04874481 1.154100754 1.136599042 285019798 poba Xanthomonas albilineans GPE PC73 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas albilineans; 1.108836841 1.067414174 1.062420179 1.082172601 1.012168549 1.064802335 1.019995679 1.040906601 1.057993114 1.033965023 1.046762694 1.057128304 1.037245069 1.028860889 0.992350471 1.035351292 1.078113875 1.062351494 404252957 B_lactamase_A Sphingomonas sp. PAMC 26621 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 1.096458445 0.945981551 0.994173831 0.922823117 0.900806003 0.905154097 0.907556831 0.962386251 0.937466262 0.942514046 0.845525589 0.929534801 0.899377186 0.932440457 342320646 glx Rhodotorula glutinis ATCC 204091 Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;order:Sporidiobolales;genus:Rhodotorula;species:Rhodotorula glutinis; 0.778989871 0.790766879 0.800455872 0.8397465 0.81650372 0.804307951 0.849182384 0.830654696 198033775 aps_apra endosymbiont of Oligobrachia haakonmosbiensis Sulfur adenylylsulfate reductase NA superkingdom:Bacteria; 0.766348214 0.810354435 0.77264162 0.799871973 157804738 APS_AprB Thiocystis violascens Sulfur adenylylsulfate reductase NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiocystis; 0.890437174 0.901131158 0.916632107 0.886348144 0.836176123 0.834759388 0.841980238 0.807473274 0.897590482 0.921214396 0.879096063 0.894612084 0.856605041 0.862763722 0.810323571 0.825865554 0.917130212 0.919006386 156446817 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.038891421 1.078322175 1.019156042 1.062924741 1.022581115 1.043779574 0.987787261 1.029522691 1.047653664 1.045248841 1.043748918 1.016152068 1.027865941 0.996578413 0.986366433 1.009811998 1.048951103 1.056587643 118591562 PRK Stappia aggregata IAM 12614 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 0.921266172 0.927257445 0.908976075 0.957494806 0.918864306 0.880345175 0.89625837 0.824754314 0.955151831 0.928638711 0.938803885 0.963108644 0.862571707 0.883042241 0.848433412 0.900975495 0.914027917 0.918728241 237624361 fccab Thauera sp. MZ1T Sulfur Sulfide Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Thauera; 0.852633063 0.8461025 0.876199986 0.823710839 0.861234795 0.843845055 0.823394003 0.848365766 0.810094305 0.854993 0.834450386 0.878890146 371760819 ppk Lactobacillus kisonensis F0435 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus kisonensis; 1.077170201 1.064359397 1.084177754 1.121033936 1.088064938 1.117506387 1.103945378 1.101885697 1.131852413 1.095330488 1.082523528 1.102013276 1.039699432 1.037364974 1.043312175 1.056169268 1.089524276 1.094433118 398059062 nfsa_2 Rhizobium sp. CF080 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 0.906740521 0.958784138 0.9060648 0.890976915 0.87145169 0.932207479 0.839180096 0.917207922 0.92365843 0.906753725 0.891050157 0.913673395 0.837125698 0.87267442 0.834276436 0.865824059 0.896188979 0.946560347 91977440 chnd Rhodopseudomonas palustris BisB5 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 0.791864531 0.801595318 41398632 nirb Mycobacterium avium subsp. paratuberculosis K-10 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 0.99185041 1.003828166 0.998334705 1.025901641 0.978572516 0.987366514 0.947075831 0.957579017 0.983967564 0.965935236 0.973148852 0.998808006 0.950560164 0.940028257 0.941473124 0.940504141 0.991082938 0.999653566 25990810 dsra uncultured bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.819033403 0.842001407 0.863053237 0.805839945 0.816923794 0.829952555 0.889552759 0.891196579 0.806440287 0.842053373 0.844994464 0.846661452 0.870348821 0.814000606 115519664 amyA Rhodopseudomonas palustris BisA53 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 1.220970983 1.212746691 1.192814652 1.231781954 1.200998151 1.233137948 1.200486541 1.231255401 1.190914479 1.175823244 1.195716542 1.184608916 1.177047356 1.16604147 1.198479275 1.172826699 1.23662803 1.192856285 241759012 cysI Neisseria flavescens SK114 Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria flavescens; 1.181666855 1.178737005 1.187123404 1.186978116 1.199285623 1.221016634 1.197539919 1.205410469 1.181298832 1.181764433 1.191836968 1.179166448 1.169033118 1.137586906 1.131479851 1.168234755 1.206963073 1.17876165 121709930 lactase_fungi Aspergillus clavatus NRRL 1 Carbon Cycling Carbon degradation Lactose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 1.263035635 1.28419615 1.234298188 1.277649015 1.268554526 1.259771296 1.225885363 1.253254487 1.228100168 1.225222198 1.242680378 1.250269326 1.225304956 1.181318763 1.311413249 1.222828752 1.245748154 1.22815703 62131452 ppk uncultured bacterium Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria; 0.909200226 0.862523447 0.894180945 0.865475112 0.863309259 0.820749103 0.839973305 0.888896823 0.897991951 0.849604411 0.831940037 0.845668012 0.859004051 0.83539717 0.903232335 0.838643627 373252821 terc Nesterenkonia sp. F Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Nesterenkonia; 0.800284834 0.797103763 0.80710788 0.799521012 0.804343922 0.787883377 0.812783074 0.846867706 0.781634722 0.802645567 0.839323187 139003062 nifh uncultured nitrogen-fixing bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.984587946 0.957823349 0.982874089 0.970191244 0.936195326 0.949085263 0.927550935 0.970766149 0.977930115 0.954242769 0.925902869 0.984439026 0.950908633 0.913288138 0.909617359 0.885269551 0.955516415 0.973167518 134081588 atza Aspergillus niger Organic Remediation Herbicides related compound NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 1.117501697 1.102273443 1.117219302 1.138146618 1.091911779 1.095123115 1.100880096 1.106222139 1.127305609 1.087735981 1.078985019 1.075209304 1.063190054 1.043734718 1.033627498 1.029621263 1.130118788 1.092249223 255292567 bphc uncultured bacterium Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria; 0.973825833 0.878948886 0.86139793 0.913940972 0.891070381 0.961744498 0.886556651 0.849848558 0.885010244 0.927411435 0.853480488 0.851575523 0.857417894 0.885819542 0.97541859 0.869577962 0.935366599 0.927286198 361052732 pgk Sulfobacillus acidophilus DSM 10332 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XVII. Incertae Sedis;genus:Sulfobacillus;species:Sulfobacillus acidophilus; 1.043296201 1.018188983 0.992690167 1.039365239 1.031919288 1.030796323 1.016757725 1.056201398 0.99601669 0.960743855 1.015863351 1.040146759 1.029054906 1.03051807 0.981737121 1.001794833 1.02167348 1.010400762 334341835 dsra Desulfotomaculum ruminis DSM 2154 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum ruminis; 0.86477442 0.835339971 0.809879428 0.862624979 0.870761238 0.827782939 0.842500378 0.816948393 0.829767796 0.825831397 0.803382834 0.807454492 0.819608703 0.853622293 0.779004494 0.822192046 356690790 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.859980145 0.897992738 0.870754921 0.921185434 0.842681487 0.891210886 0.886754023 0.902065984 0.89555267 0.895486965 0.906727033 0.894996611 0.841545568 0.850486787 0.796002416 0.835944511 0.92731539 0.899748179 293604339 FBPase Achromobacter piechaudii ATCC 43553 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter;species:Achromobacter piechaudii; 0.901287391 0.951616799 0.879322111 0.937674775 0.890575101 0.893916999 0.852324509 0.878338276 0.900582523 0.873765 0.874588533 0.893457532 0.858456858 0.86904013 0.88770614 0.865071396 0.906277401 0.936123888 385867132 alkb uncultured bacterium Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria; 0.780496214 0.838038064 0.801280808 0.84807545 126732364 phn Sagittula stellata E-37 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 1.412065264 1.37821381 1.380790676 1.404924307 1.387568862 1.386483187 1.38359379 1.400808826 1.380126577 1.354183566 1.37544015 1.389469492 1.359892751 1.338489534 1.374816717 1.368320128 1.387116474 1.356292993 259022373 FBPase Rhodobacter sp. SW2 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter; 1.344317335 1.28431388 1.263330473 1.299110257 1.249635221 1.303230122 1.23492485 1.274717525 1.271159818 1.254463838 1.274477459 1.285490283 1.245121852 1.248753488 1.233963556 1.260692161 1.297614037 1.265104343 302404838 chnb Verticillium albo-atrum VaMs.102 Organic Remediation Other Hydrocarbons NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticillium;species:Verticillium alfalfae; 0.842372361 0.840321525 0.898638878 0.88119142 0.922454615 0.847424204 0.93102527 0.924050991 0.914866721 0.917252458 0.888830287 0.910077694 0.901489811 0.816230406 0.835088188 0.834733664 0.898523319 0.841851707 358639640 arra Azoarcus sp. KH32C Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 1.362644746 1.311802097 1.28726667 1.323898887 1.274995961 1.316543953 1.264565756 1.297699548 1.323098452 1.30637317 1.283646566 1.296845799 1.268856096 1.221431332 1.216481089 1.27514668 1.348859157 1.308498756 226347084 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.011599274 1.013572792 0.967663362 1.020243098 0.933529103 1.000400352 0.983829552 0.962317934 0.95370648 0.941856061 0.925755463 0.987115393 0.965540318 0.941195697 0.966810422 0.942788486 0.98752463 83837205 dmdA Roseovarius nubinhibens ISM Sulfur DMSP degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius;species:Roseovarius nubinhibens; 0.888119813 0.906767124 0.935513187 0.848833717 0.945468271 0.979171922 0.896808404 0.911300128 0.900840519 0.933403497 0.900419955 0.910475133 0.93453054 0.905737639 1.042112044 0.8658619 0.979900769 0.985828562 37266291 phytase Obesumbacterium proteus Phosphorus Phytic acid hydrolysis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Obesumbacterium; 0.928589897 0.964404978 0.819711507 0.998504145 0.897753778 0.889597919 0.890918122 0.939077599 0.944806731 0.91609118 0.882770675 0.944522507 0.851987241 0.84410234 0.880312961 0.938169763 0.928286883 133912307 mdlc Saccharopolyspora erythraea NRRL 2338 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 1.029957545 1.049895686 1.020797001 1.02473172 1.037386989 1.023377965 0.988898187 1.003105826 1.009157678 1.023301836 1.02414509 1.008772354 0.988633079 0.996213184 0.977263032 0.98355155 1.021639622 1.034054875 238592280 p450aro Moniliophthora perniciosa FA553 Organic Remediation Aromatics polycyclic aromatics superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Marasmiaceae;genus:Moniliophthora;species:Moniliophthora perniciosa; 0.903499737 0.916791964 0.871727744 0.956181236 0.885877923 0.890582148 0.8874574 0.887188073 0.899822144 0.874904498 0.879447775 0.896607907 0.885871317 0.885115562 0.873846489 0.877191791 0.943332357 0.917786346 371583932 mer Corynebacterium diphtheriae BH8 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium diphtheriae; 1.407876738 1.372440772 1.362123004 1.382520803 1.338790185 1.393485674 1.333910021 1.361741846 1.354858283 1.346620693 1.353762029 1.352842115 1.328323355 1.32108041 1.333579336 1.357607245 1.387490945 1.350513101 227190666 badh Lactobacillus brevis subsp. gravesensis ATCC 27305 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus brevis; 1.029756028 1.029416735 1.001417298 1.061106891 1.012515041 0.996760106 1.036559411 1.022355265 1.092904983 1.02355644 1.000400286 1.030712057 0.988661088 0.973508872 0.933141035 0.983897574 1.024913344 0.98672935 76056987 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.206109643 1.26446012 1.180849483 1.229764074 1.211319936 1.245631145 1.158801301 1.208147859 1.208549953 1.226866792 1.193180926 1.219719216 1.212740324 1.192082382 1.166963883 1.217162398 1.243657471 1.237762724 325290931 nifh Syntrophobotulus glycolicus DSM 8271 Nitrogen Nitrogen fixation NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Syntrophobotulus;species:Syntrophobotulus glycolicus; 1.228123799 1.065129856 1.080969972 1.086098429 1.052641182 1.099351304 1.054277455 1.028808514 1.098055649 1.040167453 1.053495814 1.054057544 1.015074617 1.005402475 1.027923344 1.023662649 1.111734764 1.084570015 384040825 aoxb uncultured bacterium Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 0.846296621 0.783110463 356690623 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.988353621 0.926146979 0.982162372 0.968331996 0.888851306 0.92034374 0.916378734 0.922383764 0.950142937 0.948329866 0.950819444 0.955550116 0.924158923 0.917450494 0.883416866 0.913823146 0.974158119 0.965890615 355373223 terc Selenomonas infelix ATCC 43532 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas infelix; 0.851629351 0.856231611 0.965590889 0.920380905 0.94401199 0.920191126 0.946956481 0.944291908 0.926166625 0.932360003 0.889098071 0.91157403 0.854938821 0.856522663 0.856953773 0.866444046 0.918516876 0.921862821 334343547 tfda Sphingobium chlorophenolicum L-1 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium;species:Sphingobium chlorophenolicum; 1.021408575 1.076315959 1.013758287 1.045391381 1.020299822 1.082473449 0.996355321 1.02143589 1.036466347 1.024782961 1.024160094 1.032950278 1.011470594 0.993787183 0.960537503 1.032331167 1.062861643 1.07611658 298599970 cysJ Acidobacterium sp. MP5ACTX8 Sulfur Reduction NA superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Granulicella;species:Granulicella mallensis; 1.018217069 0.954516685 0.921162566 0.98356485 0.925106937 0.964908368 0.906142904 0.901736812 0.960367587 0.956202918 0.911909788 0.925998392 0.946308067 0.907657151 0.858784016 0.921328553 0.981279109 1.006443885 383640620 poba Sphingomonas elodea ATCC 31461 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas elodea; 1.174920075 1.174161297 1.163946615 1.184383162 1.205350272 1.188568384 1.178093349 1.177728241 1.161750489 1.178026013 1.186403386 1.172421717 1.124356457 1.148502723 1.094702517 1.155694021 1.175955014 1.193158248 359278874 IcfA Synechocystis sp. PCC 6803 substr. PCC-P Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechocystis;species:Synechocystis sp. PCC 6803; 1.042683691 1.02008681 1.005045025 1.050518429 1.000927435 0.980564763 1.01592766 1.00517168 0.993399218 1.004050226 1.004357468 0.992896077 0.974917168 0.987882287 0.981058033 0.969271252 1.03754147 1.004726107 156188199 mauab Methylobacterium chloromethanicum CM4 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium chloromethanicum; 1.279618735 1.27312497 1.229109657 1.268734519 1.244136571 1.30064405 1.217856165 1.244839349 1.236399237 1.23261744 1.238231082 1.251110022 1.224025747 1.230225047 1.196881325 1.236219495 1.253526831 1.248227332 206685159 FBP_aldolase Rhodobacterales bacterium Y4I Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 0.888568198 0.901676234 0.903663839 0.929303318 0.921857186 0.912200226 0.922317512 0.88306951 0.889532079 0.910153802 0.902885673 0.935405996 0.93141142 0.91074358 0.882005392 0.928075029 0.917333305 0.90790934 302410213 Glucose_oxidase_fungi Verticillium albo-atrum VaMs.102 Carbon Cycling Carbon degradation glucose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticilium;species:Verticillium albo-atrum; 0.798114902 0.811128994 0.772325546 0.821243041 0.783565593 0.80184111 0.81159074 0.822465215 0.860099173 0.784517835 0.813073226 242238757 phn Dickeya dadantii Ech703 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya dadantii; 1.173570795 1.142916403 1.168768198 1.205162709 1.157921913 1.191609011 1.180150209 1.166502927 1.179530445 1.169034814 1.167337134 1.182017728 1.11919887 1.11968615 1.136704999 1.143532282 1.17471347 1.152088308 197711271 RgaE Streptomyces sviceus ATCC 29083 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 1.090607963 1.147285894 1.074836258 1.086606847 1.086441622 1.127882963 1.073350824 1.049290881 1.083016974 1.131183404 1.111343792 1.126484298 1.089767544 1.094669583 1.051510052 1.109512693 1.080290095 1.14679837 270334236 amyA Prevotella bergensis DSM 17361 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella bergensis; 0.841239744 0.824861756 0.814620934 0.823412413 0.862299143 0.804664857 0.803318182 0.809057814 0.837216406 0.840251541 0.866928614 350635352 mdlb Aspergillus niger ATCC 1015 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 0.827055463 0.878511303 0.857844115 0.852344005 0.794987867 0.81135667 0.7871697 0.846697187 0.801051576 0.845482629 209531358 FBP_aldolase Gluconacetobacter diazotrophicus PAl 5 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter diazotrophicus; 0.820796391 0.860110889 0.844274945 0.862095206 0.817126116 0.867440697 0.815418237 0.843315853 0.848507671 0.820194503 0.800399451 0.830389456 0.847053216 0.85455087 227077392 cutinase Corynebacterium accolens ATCC 49725 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium accolens; 0.797121679 0.831898789 0.842946091 0.844882406 0.809237308 0.828718232 0.852003132 0.813895456 0.824521253 0.830413044 0.834568335 0.874593327 225568285 CsoS1_CcmK Clostridium hylemonae DSM 15053 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hylemonae; 0.907148182 0.854957029 0.850722595 0.836028467 0.846561184 0.824648914 0.909117831 0.825016613 0.831214307 0.860021389 0.830453509 0.907261634 76666785 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.025919812 1.115907749 1.016319608 1.115871303 1.031235508 1.046639153 1.017374268 1.026109439 1.003835646 1.03765677 1.025014733 1.163226815 1.016421646 1.030741831 1.026242752 1.047459438 1.072044954 294677758 nifh Rhodobacter capsulatus SB 1003 Nitrogen Nitrogen fixation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter capsulatus; 0.945460859 0.914171262 0.986670601 0.947274512 0.905184712 0.874208368 0.841557752 0.887191945 0.849456991 0.845055773 0.957289622 0.938333665 0.873850312 0.919835614 0.862944456 1.063310558 0.925246354 0.960146163 150036060 SoxB Thiocystis violacea Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiocystis; 1.317623048 1.28507068 1.271265124 1.270520925 1.325378947 1.361922362 1.302281071 1.173460959 1.204130406 1.36080408 1.248175784 1.270765597 1.251435276 1.318421269 1.305958037 1.247406698 1.284890719 1.301439008 320102603 fthfs Isosphaera pallida ATCC 43644 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Isosphaera;species:Isosphaera pallida; 1.012738034 1.021527107 1.101446623 1.083220742 1.097723804 1.094759039 1.106097487 1.071656153 1.071802801 1.080400154 1.099864693 1.093908844 1.038644621 1.035579011 1.04768908 1.046943301 1.062914079 1.068145769 238059669 xylanase Micromonospora sp. ATCC 39149 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Micromonospora; 1.114238536 1.042691329 1.17949204 1.077600453 1.106042883 1.122579179 1.075775931 1.077825811 1.136126135 1.081683772 1.084925163 1.106386934 1.108456251 1.091050971 1.205725349 1.097925947 1.152106966 1.099080349 67088759 arsc Azotobacter vinelandii AvOP Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Azotobacter;species:Azotobacter vinelandii; 1.016993112 1.040474518 1.028194042 1.036701301 1.040688287 1.012126613 1.01713231 1.039073352 1.045837997 0.99841311 1.041931953 1.003261893 0.964661302 1.02129763 0.981200932 1.02417668 0.980231957 0.981234538 153852900 bco Dorea longicatena DSM 13814 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Dorea;species:Dorea longicatena; 0.951704163 0.912211437 0.913731744 0.984990198 0.912305769 0.914237099 0.897562961 0.911373645 0.949109414 0.906266846 0.9023342 0.951455966 0.928203556 0.878580916 0.911129755 0.868829982 0.960212044 0.908168352 341935574 pectinase (pectate_lyase) Xanthomonas campestris pv. raphani 756C Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas campestris; 0.84875108 0.833167131 0.845135877 0.807374833 0.850278131 0.826728506 0.834516849 371776257 amyA Anaerophaga sp. HS1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Marinilabiliaceae;genus:Anaerophaga; 0.777308238 0.789070274 0.817110881 0.776530239 321161583 amyA Granulicella tundricola MP5ACTX9 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Granulicella;species:Granulicella tundricola; 0.988244949 0.921151766 0.958033778 1.002731302 0.939971938 0.974430618 0.962325225 0.998851974 0.941217008 0.910441945 0.949224489 0.942197105 0.867160142 0.896235359 0.853330576 0.87374494 0.960104526 0.98406147 197106169 terc Phenylobacterium zucineum HLK1 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Phenylobacterium;species:Phenylobacterium zucineum; 1.197134009 1.196948155 1.114150785 1.196948394 1.14855858 1.171834319 1.150475365 1.153589109 1.176236895 1.108767617 1.142698256 1.179116682 1.138354681 1.092512741 1.112029311 1.134486 1.146439341 1.145723906 28853374 mdld Pseudomonas syringae pv. tomato str. DC3000 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 1.195610192 1.180448119 1.179539651 1.172315649 1.175667014 1.188728623 1.151183594 1.165065828 1.189959543 1.1781404 1.161488594 1.176279383 1.159565155 1.130329077 1.130487724 1.138366237 1.20669471 1.182394192 330994236 cpna Gluconacetobacter sp. SXCC-1 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter; 0.951397002 0.945680222 0.963358156 0.902939177 0.910651751 0.928361611 0.830744806 0.962073653 0.973969376 0.890263196 0.874038035 0.924976387 0.857562446 0.915468303 0.859188352 0.85462128 0.92488405 0.945740072 238060164 terc Micromonospora sp. ATCC 39149 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Micromonospora; 1.010519593 0.989993772 0.980759923 1.000918312 0.949215992 1.02250727 0.985580685 1.005089726 0.998705543 1.004395253 0.958931558 1.008444231 0.934888506 0.961816506 0.921256692 0.906497832 1.007976695 1.03142565 332270601 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.758330528 0.814128563 258569445 endochitinase Uncinocarpus reesii 1704 Carbon Cycling Carbon degradation Chitin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Onygenaceae;genus:Uncinocarpus;species:Uncinocarpus reesii; 0.833762281 0.817486606 0.853779554 0.851401744 0.892755913 0.815073015 0.857701659 0.867167179 139478615 mer uncultured actinobacterium Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria; 1.019560142 1.168932316 1.009850614 1.101806288 1.10638904 1.115845189 1.108780726 0.98759441 1.042678162 1.051955055 1.046118652 1.059703442 1.053358414 1.050009723 1.048222807 1.08162716 1.032542013 1.044317503 226347232 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.874758223 0.887967887 0.841487751 0.909159286 0.889740003 0.877663091 0.881538185 0.874863061 0.894679905 0.839611473 0.845359118 0.836638209 0.883880976 0.836260935 0.835740089 0.900107898 0.898979327 108799771 urec Mycobacterium sp. MCS Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 1.062570125 1.080505848 1.072889898 1.053925197 1.056315873 1.070938473 1.047025012 1.132214285 1.065094008 1.077340481 1.050987536 1.056458869 1.038902811 1.051281999 1.01562512 1.056550173 1.114101845 1.117615999 344925148 nitro Candidatus Odyssella thessalonicensis L13 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rickettsiales;genus:Candidatus Odyssella;species:Candidatus Odyssella thessalonicensis; 0.810323861 0.817337049 0.862550245 0.781960968 0.822747272 0.853939959 21929222 mnp Phanerochaete sordida Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Corticiales;family:Corticiaceae;genus:Phanerochaete; 1.517207543 1.458852055 1.463092578 1.451613929 1.424702489 1.502682037 1.407012926 1.444711509 1.447871931 1.464568419 1.456239508 1.451427514 1.421471716 1.427284885 1.395246283 1.438313905 1.471839619 1.461803943 120563162 amie Desulfovibrio vulgaris subsp. vulgaris DP4 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio vulgaris; 1.134457 1.15849271 1.128501012 1.146326681 1.120281262 1.156327107 1.11747667 1.122451403 1.134726684 1.148571728 1.125987305 1.122842596 1.126745908 1.119994888 1.098098488 1.122829937 1.176174584 1.151174713 296164722 cdh Mycobacterium parascrofulaceum ATCC BAA-614 Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium parascrofulaceum; 0.907530287 0.934503413 0.935809903 0.956152621 0.938286115 0.885137369 0.948975287 0.993537429 0.962271362 0.907404148 0.918116243 0.928601064 0.869342618 0.847397133 0.859604154 0.823120746 0.938938613 0.872095821 374922655 arra uncultured bacterium Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 1.037222325 1.014152831 1.020693863 1.051747814 0.975477057 1.00739591 0.981068535 1.030397903 1.016759927 0.994187126 0.977608374 1.027585503 0.978451821 0.989831557 0.983367166 1.010654783 1.024416613 1.017453187 83026026 alkb uncultured bacterium Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria; 0.866192878 0.899275531 0.803928773 0.784890671 158333063 arsc Azorhizobium caulinodans ORS 571 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Azorhizobium;species:Azorhizobium caulinodans; 1.227878677 1.256962752 1.228799434 1.241108867 1.241552767 1.27474036 1.22475418 1.217928489 1.222071874 1.239027128 1.251318466 1.2578798 1.229933708 1.237750919 1.219461399 1.253791577 1.220421057 1.237428383 56798407 catechol_b uncultured bacterium Organic Remediation Aromatics Other aromatics superkingdom:Bacteria; 0.911456014 0.900559736 0.932288011 0.887089407 0.894727902 0.891172971 0.904993371 0.935890593 0.909370683 0.838064758 0.833951591 0.856896102 0.860155566 0.866861525 0.848122181 0.96242137 0.887719479 294488859 mcra uncultured archaeon Carbon Cycling Methane Methanogenesis superkingdom:Archaea; 0.751495659 0.811769293 330688052 aoxb uncultured bacterium Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 0.936509511 1.041583142 0.952221187 0.973995091 0.956537736 0.965932168 0.927855499 0.901615194 0.921615231 0.962374605 0.928813446 0.950411449 0.927054258 0.945636986 0.915642043 0.931011674 0.946434529 0.95211588 237686956 phytase Teredinibacter turnerae T7901 Phosphorus Phytic acid hydrolysis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;genus:Teredinibacter;species:Teredinibacter turnerae; 1.082601777 1.013422199 1.006460055 1.035130554 1.029323235 1.001990216 1.022171935 1.044232734 1.058681266 1.065708023 1.011023948 1.022654292 0.987053356 1.005934828 1.003419227 1.002366226 0.992893927 1.029484465 83592694 TIM Rhodospirillum rubrum ATCC 11170 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum rubrum; 0.861908276 0.89047334 0.882152905 0.929088666 0.9049129 0.935839848 0.873200744 0.901267297 0.849775529 0.890223126 0.904650067 0.854374758 0.914674222 0.858852464 0.896168344 0.890103195 0.937809085 0.898899712 254504072 phn Labrenzia alexandrii DFL-11 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia alexandrii; 0.802570839 0.835872196 0.823352491 0.799423823 0.833691981 0.818350349 0.848136041 0.833914126 0.879253296 384102127 amyA Rhodococcus imtechensis RKJ300 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus imtechensis; 0.799236156 0.935427152 0.853362445 0.860467592 0.933142054 0.943970743 0.868977858 0.883167983 0.850705211 0.936949158 0.882033544 0.90580024 0.900349118 0.90722217 0.872735881 0.928069522 0.900210784 0.902018875 6523535 nifh uncultured microorganism SN-13 Nitrogen Nitrogen fixation NA 1.236298142 1.188566648 1.202900369 1.228054798 1.212545239 1.192999727 1.201388396 1.214366075 1.219974837 1.200525008 1.238158363 1.22316645 1.175571054 1.147392092 1.132898939 1.142638385 1.186644637 1.144377844 356663200 xylj Rhodococcus opacus PD630 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus opacus; 1.364637687 1.34470681 1.31274483 1.352194271 1.299574946 1.355846112 1.276044877 1.294464283 1.270633364 1.299954316 1.28252358 1.304208314 1.293621953 1.278258894 1.270390587 1.292786563 1.371118826 1.312479721 319742105 narg Lautropia mirabilis ATCC 51599 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Lautropia;species:Lautropia mirabilis; 0.871918951 0.921347176 0.808743404 0.886351026 0.921585057 0.900439147 0.884489415 0.929446615 0.980874907 0.823601034 0.865290401 0.875342134 0.855547193 0.902467124 226242593 badh Rhodococcus opacus B4 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus opacus; 0.846734056 0.876495433 0.854154864 0.805438148 0.888951012 0.862434054 0.86841128 0.867996406 0.879999234 0.87878889 0.865312118 0.849961231 0.820555188 0.84211923 0.795337601 0.845230356 0.871814438 0.862611121 37222142 amyA uncultured bacterium Carbon Cycling Carbon degradation Starch superkingdom:Bacteria; 0.81000545 0.868876248 119863768 nosz Psychromonas ingrahamii 37 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Psychromonadaceae;genus:Psychromonas;species:Psychromonas ingrahamii; 1.133117993 1.092661005 1.078198236 1.084863307 1.095239093 1.094945398 1.089324002 1.075522691 1.129961322 1.061912653 1.102980353 1.101934155 1.085949911 1.062507453 1.125781207 1.028254743 1.086560381 1.073798754 219861464 pcag Arthrobacter chlorophenolicus A6 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 0.868038267 0.81015826 0.834387041 0.909134743 0.90700364 0.839675425 0.905793124 0.976052395 0.921082462 0.865312409 0.854930624 0.918435979 0.864458188 0.846582121 0.86960403 0.856011455 0.890809511 0.852884216 206563958 bphF1 Burkholderia cenocepacia J2315 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cenocepacia; 0.783904944 0.773525276 0.812263826 0.760549489 0.777770587 0.81052336 0.81501742 0.817919142 0.828093538 184200841 terc Kocuria rhizophila DC2201 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Kocuria;species:Kocuria rhizophila; 0.873564609 0.858318111 0.86532903 0.8836557 0.891874353 0.878432494 0.89527683 0.894175437 0.876723295 0.882329892 0.902923388 0.852184089 0.856483308 0.843770365 0.811688327 0.823908715 0.880033368 0.904888173 372488222 pgk Dechlorosoma suillum PS Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azospira;species:Azospira oryzae; 1.238680771 1.238531495 1.224444448 1.21965448 1.196618915 1.2530008 1.213055312 1.198089646 1.1936635 1.212943947 1.197687269 1.213490445 1.168263419 1.169733125 1.125050761 1.192178911 1.222309696 1.225540007 225021451 fthfs Corynebacterium matruchotii ATCC 33806 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium matruchotii; 0.977802149 0.954603557 0.961817893 0.996550497 0.999402501 0.951988287 0.983078857 0.970125874 0.97095879 0.98664243 0.969134459 0.986324631 0.959042681 0.912360324 0.906976662 0.938356316 0.946516317 0.924045168 303282825 Sir Micromonas pusilla CCMP1545 Sulfur sulfite reduction NA superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Mamiellophyceae;order:Mamiellales;genus:Micromonas;species:Micromonas pusilla; 1.057605938 1.036295951 1.008187703 1.040724211 0.975636938 1.021065953 0.975928503 1.012804982 1.038729022 1.010933574 1.004031386 1.003423135 0.990718964 0.999175004 0.993475422 0.995731088 1.04716111 0.989228585 73534215 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.80321022 0.987340617 0.860173743 0.846203185 0.861659123 0.909990859 0.85588018 0.875481786 0.856014771 0.824903351 0.865337412 0.833872247 0.911778662 27381270 atzb Bradyrhizobium japonicum USDA 110 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 0.916892439 0.894148242 0.90807722 0.883055439 0.921586599 0.880746507 0.92957794 0.911602601 0.907647231 0.918346262 0.930689368 0.902188253 0.899795982 0.882040619 0.870687709 0.842007102 0.901380993 0.932525434 187476763 terc Bordetella avium 197N Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella avium; 1.246697016 1.202710074 1.206144519 1.219154234 1.193881796 1.211464416 1.194195392 1.201377872 1.172212786 1.188758284 1.169161367 1.206658742 1.175297901 1.164394593 1.142289112 1.224694891 1.228251912 1.162428342 300545347 amyA Streptomyces avermitilis MA-4680 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 1.028558882 1.074711419 1.052024971 1.042566882 1.014847257 1.072613418 1.028366094 1.039510915 1.028442606 1.037678682 1.027827527 1.052897928 1.00977176 1.014348306 0.983189756 1.035495041 1.038294165 1.028965175 228572122 amyA Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Nocardiopsis;species:Nocardiopsis dassonvillei; 0.985022357 0.948141255 0.992457853 1.000502894 1.008488312 1.034313939 0.975497683 1.003951897 1.016680127 1.006734694 0.992857601 0.997065942 0.981253982 1.003897656 0.980058711 0.95206128 0.983166686 0.986921555 374854164 tehb uncultured delta proteobacterium Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 0.879920084 0.897098418 0.88759468 0.909475249 0.878591356 0.89154832 0.90161454 0.883060756 0.952156637 0.932873783 0.902562257 0.909682629 0.877296568 0.842396263 0.820855327 0.840783905 0.89047527 0.9093964 259348438 nhh Silicibacter sp. TrichCH4B Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 0.986431531 0.998180236 0.986866715 1.000840287 1.031366543 1.041526697 1.044968574 1.0029941 0.989329283 1.052476548 1.020388042 0.999313639 0.945558438 0.973386934 0.932755163 1.004080123 0.945225029 0.986351072 264675172 amyA Caulobacter segnis ATCC 21756 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter segnis; 1.319111329 1.35050427 1.291026042 1.259882282 1.283610545 1.328778856 1.334463489 1.327427241 1.326041812 1.279409451 1.292916912 1.307833436 1.275504704 1.285087977 1.298977484 1.294379713 1.288342192 1.291713328 82568648 badh Rhodococcus erythropolis Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 0.791977161 0.878591731 0.879931751 0.865540153 0.85641808 0.824853389 0.812497482 0.823179775 0.834389305 0.822597507 0.86516064 0.846813589 0.928004011 0.858273892 0.88627235 422314453 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.980381821 0.985410096 0.960631243 1.004593562 0.956925373 0.956005928 0.958330286 0.931913217 0.957319391 0.965925793 0.985298 0.9337742 0.920121417 0.908124578 0.91865732 0.911560987 1.003866517 0.973270198 76058111 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.966592174 0.930358003 0.991121772 0.938336625 0.992767398 0.976522922 0.995963416 0.976075953 0.973134044 1.00548182 1.00209867 0.950957022 0.980494862 0.91546978 0.929672529 0.945682463 1.046992781 1.007457422 359785100 pcpe Halomonas sp. GFAJ-1 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas; 1.032168107 1.099931934 0.981204287 1.033134925 1.010391708 1.071749414 0.99965056 1.03950276 1.045864953 1.072463847 1.001005647 1.01861982 1.008633252 1.049896785 0.936583841 1.010606885 1.001949754 1.082226855 112462677 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.95871172 0.974130615 0.893096444 1.014064439 0.912787226 0.921676454 0.898905578 0.941512497 0.93105472 0.930236139 0.860571769 0.923345296 0.87032953 0.885747299 0.850804337 0.897310687 0.961306741 0.935320588 13249519 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.080906354 1.008641938 1.020334 1.065289708 1.022785167 1.020264028 1.017864605 1.030956745 1.07943747 0.993359022 1.004016219 1.065218298 1.000549438 0.975746473 0.980359177 1.008238297 1.060600392 1.024633153 227069639 nira uncultured archaeon Nitrogen Assimilatory N reduction NA superkingdom:Archaea; 1.184702553 1.182675501 1.147234898 1.221249665 1.161837749 1.157596541 1.168847666 1.152463847 1.144594606 1.153342514 1.144273824 1.189595868 1.136853085 1.131141526 1.155955365 1.152423938 1.180587741 1.135091203 293395633 nasa Serratia odorifera DSM 4582 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia odorifera; 0.801837999 0.839616348 0.785520901 0.858519313 0.853161534 0.815788491 0.78671793 0.782431328 0.822350495 0.842567772 333488662 terc Mycobacterium sp. JDM601 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 0.906209953 0.883150671 0.836848232 0.89405877 0.845032843 0.854660956 0.861957236 0.885838366 0.855663383 59859756 EF1a_Stramenopiles Cyclotella cryptica Other Phylogenetic NA superkingdom:Eukaryota;phylum:Bacillariophyta;class:Coscinodiscophyceae;family:Stephanodiscaceae;genus:Cyclotella; 0.906825462 0.963761132 0.837886896 0.902858537 0.907667823 0.927986054 0.866166657 0.893189522 0.849112458 0.856704333 0.928967173 0.913182474 0.868040892 0.892814252 0.844397117 0.884809861 0.874799421 0.853835256 165880025 exoglucanase uncultured fungus Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi; 0.87604662 0.909789793 0.840786431 0.903394148 0.845139251 0.903076347 0.872249137 0.915978402 0.907177862 0.892349876 0.84739455 0.914325711 0.837830187 0.85595478 0.90091 0.908010829 0.905306785 91691550 alkb Burkholderia xenovorans LB400 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 0.878611519 0.956341061 0.893830159 0.952739215 0.913827271 0.967020847 0.908885813 0.909211933 0.91669538 0.945572566 0.853545829 0.911670502 0.861124274 0.808184208 0.860158217 0.854574034 0.924095791 0.929696523 422314279 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.836080613 0.870568397 0.892934482 0.910223239 0.88240557 0.817368847 0.897128156 0.919505956 0.907054506 0.894298232 0.862776967 0.872437739 0.86477647 0.826235127 0.81951754 0.877148354 0.839093334 384371766 urec uncultured bacterium Nitrogen Ammonification NA superkingdom:Bacteria; 0.893062275 0.852357051 0.894397274 0.912377677 0.846452847 0.871155357 0.826161534 0.841034852 0.897631906 0.908411585 0.888432208 0.8763027 0.866283787 0.878932811 0.852963174 0.882323272 0.88364995 99030445 ppk uncultured bacterium Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria; 0.817477593 0.811716359 0.863306968 0.882193312 0.82634467 0.882976495 0.86871296 0.855996994 0.855301362 0.820886122 0.832808808 0.799276666 0.807941662 0.911422979 0.857585938 388062142 amyA Gardnerella vaginalis 00703C2mash Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Gardnerella;species:Gardnerella vaginalis; 0.944755408 0.908939453 0.921679107 0.927555011 0.925704237 0.908011217 0.879239123 0.888966584 0.907931165 0.880548492 0.882912341 0.88185279 0.865454265 0.842532665 0.863904953 0.897322382 0.937563814 197322310 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.942394754 1.002780771 0.949504258 0.923648067 0.95757718 0.907162873 0.911302627 0.948249436 0.958639442 0.948973061 0.963656612 0.926785781 0.95134636 0.900493114 0.936112252 0.928900417 0.961249634 237785218 fthfs Corynebacterium kroppenstedtii DSM 44385 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium kroppenstedtii; 1.096870207 1.108035868 1.129705776 1.080442223 1.104569067 1.101358722 1.101064624 1.084382335 1.082879979 1.097660041 1.089953695 1.089740979 1.082273401 1.032018482 1.02821277 1.046731638 1.105226345 1.095543289 296825494 cellobiase Arthroderma otae CBS 113480 Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Arthrodermataceae;genus:Arthroderma;species:Arthroderma otae; 1.02954959 0.963046375 0.974306448 1.052321391 1.015015198 0.988234385 0.99307527 1.01523671 1.019081052 0.99242621 1.003191331 1.02255552 0.98338146 0.943106988 0.974085025 0.99298701 1.052176495 0.939480307 320151419 amyA Thermus scotoductus SA-01 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus;species:Thermus scotoductus; 0.879234195 0.874090223 0.836017957 0.923554491 0.881282252 0.909465616 0.893695 0.847791344 0.87211468 0.878687302 0.891861762 0.862587503 0.883043598 0.845295823 0.883968976 0.898519221 0.905204309 317123613 amyA Intrasporangium calvum DSM 43043 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Intrasporangium;species:Intrasporangium calvum; 1.234054312 1.240018313 1.250824023 1.247317029 1.264716797 1.255357309 1.218036449 1.212487451 1.224473611 1.208070531 1.297576706 1.230836811 1.228377997 1.204121895 1.224890106 1.196731717 1.221393235 1.215447752 378590467 limeh Nocardia brasiliensis ATCC 700358 Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia brasiliensis; 1.297643887 1.252740427 1.253798021 1.251401184 1.198121324 1.272001777 1.219905476 1.228798083 1.239574983 1.233241072 1.222152879 1.240733892 1.205699164 1.199352124 1.191453566 1.228965013 1.257942904 1.220276045 337746156 inulinase Paenibacillus mucilaginosus KNP414 Carbon Cycling Carbon degradation Inulin superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 1.068563685 1.058695923 1.05880857 1.073436481 1.023663739 1.052578565 1.040991444 1.080784927 1.07832184 1.035682908 1.032770446 1.036090052 1.050513952 1.049269754 1.007668595 1.05800792 1.03700739 1.071786157 323366006 nifh uncultured microorganism Nitrogen Nitrogen fixation NA 0.865672317 0.870371666 0.924191481 0.953943456 0.92698176 0.912721977 0.91294108 0.884657931 0.89704449 0.985842284 0.919488026 0.971315058 0.975659417 0.934925665 0.873999143 0.89516906 0.914388088 0.886749813 110824743 cpnc Rhodococcus jostii RHA1 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 0.945769002 0.90199984 0.88209989 0.945773869 0.90234324 0.971571124 0.893323011 0.960165025 0.949090882 0.948144252 0.887996216 0.942078871 0.836053046 0.923001127 0.906755179 0.978177576 0.962888952 302558026 terc Streptomyces griseoflavus Tu4000 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseoflavus; 1.206686233 1.240788913 1.182693243 1.179899523 1.198710137 1.256943851 1.169045845 1.133909054 1.154792417 1.204378803 1.198284998 1.19741794 1.19444707 1.176487065 1.165508838 1.188675463 1.206166551 1.203883975 109457186 cmci Roseobacter denitrificans OCh 114 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter denitrificans; 1.070668496 1.035495065 1.07055435 1.060377715 1.066467399 1.046786106 1.080044391 1.068234546 1.062212386 1.043875314 1.073883489 1.08466769 1.012182318 1.017565524 0.997801098 1.047715133 1.081822338 1.064386636 295689722 phytase Caulobacter segnis ATCC 21756 Phosphorus Phytic acid hydrolysis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter segnis; 1.01702679 1.000596611 0.979952991 1.045210522 1.05534734 1.00623154 1.070279294 1.069758419 1.085857009 0.984485067 1.011355073 1.013107318 1.009839413 0.974985307 1.006980846 1.137349341 0.97680408 0.962612315 39973413 ara Magnaporthe grisea 70-15 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 1.046418649 1.057493622 1.02176065 1.051190613 1.025993052 1.056534969 1.042407212 1.040679765 1.034331109 1.04491507 1.005947463 1.063200734 1.025158237 1.001535901 0.974776836 1.045907833 1.074558228 1.041886446 315277484 chitinase Paenibacillus vortex V453 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus vortex; 0.890631362 0.905035443 0.859758886 0.901029504 0.887694374 0.92874835 0.920858162 0.941585776 0.872947624 0.882461455 0.820213674 0.905220801 0.827551941 0.825206534 0.833870965 0.88794966 0.911489382 116804596 nasa uncultured prokaryote Nitrogen Assimilatory N reduction NA 0.901868671 0.88256935 0.970148681 0.981798439 0.907511547 0.927255647 0.926018441 0.969398747 0.943535223 0.931509816 0.907985529 0.949601849 0.911187299 0.854983777 0.901495711 0.903548786 0.95371662 0.979844453 199652691 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.999620292 0.999743376 0.898439476 0.933649149 0.920962921 0.928856744 0.914107973 0.915608605 0.911401081 0.898815072 0.921118511 0.920171644 0.94468372 0.875254208 0.904645424 0.910094344 0.929957859 0.946444752 211583958 cellobiase Penicillium chrysogenum Wisconsin 54-1255 Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 0.829126715 0.834812361 0.833094269 0.858702131 0.825682376 0.822778373 0.800530777 0.822505562 0.848967184 0.886410282 126105539 phenol_oxidase uncultured fungus Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi; 0.757920031 0.808282589 0.76938804 0.861809045 0.794389246 0.823279058 0.796970576 0.798543404 0.773612853 0.854178886 255020282 FBP_aldolase Acidithiobacillus caldus ATCC 51756 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus caldus; 1.43945312 1.384082604 1.42452687 1.432999409 1.400580381 1.435775705 1.390443856 1.395556719 1.412671136 1.424689691 1.401842094 1.41460812 1.384626213 1.397005702 1.396878316 1.399886033 1.439589412 1.388629128 327395344 terc Pantoea ananatis AJ13355 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea;species:Pantoea ananatis; 1.441368467 1.389614217 1.395838591 1.443560912 1.410847427 1.427041558 1.412905765 1.435238419 1.406204074 1.387231418 1.403133423 1.452327841 1.384028718 1.377833256 1.385555258 1.416298336 1.399327087 1.358095239 312194849 amyA Frankia sp. EuI1c Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 0.778585032 0.788830314 0.803269915 0.813822397 0.78346822 0.790895718 374322355 rgl Paenibacillus terrae HPL-003 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus terrae; 0.752193137 0.824991934 0.80920156 0.836785273 146188562 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.810969979 0.828432732 0.885879741 0.870156603 0.867070228 0.860593609 0.867109702 0.86399389 0.844395875 0.813554069 0.842204595 0.836625047 0.830329388 0.887546282 226939584 ppk Laribacter hongkongensis HLHK9 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Laribacter;species:Laribacter hongkongensis; 1.113265982 1.099963278 1.093235921 1.091905351 1.05108702 1.094762452 1.044694476 1.071879326 1.083219102 1.098159079 1.056303961 1.093099813 1.040281571 1.049615411 1.048541818 1.051596439 1.111012526 1.118670565 146406836 xylxy Bradyrhizobium sp. BTAi1 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 1.237577789 1.21821018 1.205658889 1.218372577 1.187240445 1.224966644 1.190222692 1.23478213 1.170805075 1.191657417 1.195170994 1.20945797 1.209224023 1.150203548 1.187298617 1.168678833 1.220310987 1.188509184 333488471 amyA Mycobacterium sp. JDM601 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 1.279948493 1.287820125 1.248244219 1.247421303 1.255963037 1.2835059 1.233573655 1.238840585 1.250027045 1.241508678 1.245026087 1.241340276 1.239923874 1.226737589 1.228474867 1.227047526 1.298896417 1.263610476 83814888 endochitinase Salinibacter ruber DSM 13855 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Bacteroidetes;order:Bacteroidetes Order II. Incertae sedis;family:Rhodothermaceae;genus:Salinibacter;species:Salinibacter ruber; 0.946284587 0.87951008 0.865077225 0.869674172 0.883780598 0.933917652 0.823827445 0.890919839 0.913641148 0.86859875 0.815640573 0.938703915 0.801694569 0.834890861 0.839328123 0.863259284 0.899222728 156104506 pmoa uncultured bacterium Carbon Cycling Methane Methane oxidation superkingdom:Bacteria; 0.990740596 0.972771117 1.016874753 1.052548924 1.005433342 1.00357333 0.960912572 0.975503845 0.989215635 0.924504621 0.952214914 0.996755926 0.950592803 0.922755907 0.908109579 0.95535298 1.012926103 0.966275853 294884121 aoxb bacterium enrichment culture clone aoxheteroA49_4W Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 0.914945166 0.875637193 0.888660684 0.930403291 0.905786745 0.913379073 0.920313792 0.906048519 0.896078429 0.878091372 0.884667221 0.922486302 0.833201452 0.844070658 0.851366128 0.846190627 0.926073785 0.918977273 329758681 endoglucanase Gluconacetobacter sp. SXCC-1 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter; 1.119151443 0.996198666 1.012972178 1.077394118 0.986675224 0.973922373 0.97786893 0.985484088 1.009693192 0.964745134 0.965836692 1.025145803 1.028307585 0.996921785 0.960475808 0.968209655 1.023317346 1.00501098 343461781 ppk Ketogulonigenium vulgarum WSH-001 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ketogulonicigenium;species:Ketogulonicigenium vulgare; 0.801555471 0.812450595 0.816022933 0.807694645 0.849622443 0.834626534 0.846782811 254451080 pula Octadecabacter antarcticus 238 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter arcticus; 0.809123195 0.82621447 0.860169129 1.105285352 0.839683068 0.838958765 0.870726722 0.910619334 0.812157316 0.829833962 0.897566035 0.825124109 186461326 arylest Klebsiella sp. ZD414 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella; 1.044614723 1.033808338 1.041063916 0.989198275 0.966913921 0.921175009 0.902755971 0.943327526 1.037273535 1.020829382 0.973294675 0.962346525 0.944550074 0.903268785 0.923814197 0.883438818 1.062659568 1.0886644 134101899 terc Saccharopolyspora erythraea NRRL 2338 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 0.964331421 0.959107188 0.93476165 0.965511001 0.963998332 0.939774988 0.953427854 0.956536176 0.923982362 0.927109698 0.93115834 0.95362392 0.857972212 0.898986401 0.859283295 0.870917111 0.952896388 1.002431572 292655605 gdh Haloferax volcanii DS2 Nitrogen Ammonification NA superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloferax;species:Haloferax volcanii; 0.858881762 1.036333399 0.809562809 0.880283074 0.86318491 259021123 fthfs Rhodobacter sp. SW2 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter; 1.031739611 0.96551673 1.052172455 1.064493843 1.020690416 1.058553254 1.03334928 1.038992462 1.012752124 1.046798224 1.057052671 1.054699163 0.995598612 1.0007061 0.986507234 1.001772837 1.086084259 1.045441034 334130366 terc Methyloversatilis universalis FAM5 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Methyloversatilis;species:Methyloversatilis universalis; 0.917853759 0.984799043 0.906840828 0.924886959 0.941387749 0.946823636 0.901006513 0.913259283 0.962237228 0.960473072 0.946573477 0.930487893 0.933348905 0.911671292 0.898797345 0.962363041 1.049294615 0.961815334 269305886 amyA Xylanimonas cellulosilytica DSM 15894 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Promicromonosporaceae;genus:Xylanimonas;species:Xylanimonas cellulosilytica; 0.984549409 1.001956066 0.955532895 0.971624883 0.85479559 0.952496622 0.84420041 0.960682404 0.953321407 0.965370152 0.882839809 0.923929746 0.820237532 0.917288124 0.882051496 0.921689004 0.997112455 1.028700898 1580816 alpha_galactosidase_fungi Hypocrea jecorina Carbon Cycling Carbon degradation Other superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Hypocreaceae;genus:Hypocrea; 0.943283353 0.95619462 0.867196914 0.90715403 0.856137759 0.929407823 0.87594556 0.92663252 0.918153772 0.922258047 0.804693505 0.945219372 0.885728813 0.827298228 0.79050065 0.828965607 0.855416774 0.934034121 48527096 mcra uncultured Methanosaeta sp. Carbon Cycling Methane Methanogenesis superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosaetaceae;genus:Methanosaeta; 0.938952972 1.028701802 0.885372477 0.995490457 0.927619522 0.956747624 0.940510255 0.908725476 0.92789435 0.927810571 0.916901871 0.912017067 0.959285195 0.926874915 0.986031953 0.944256976 0.934231442 0.973955117 163811600 rd Dehalococcoides sp. VS Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 1.485870512 1.453644727 1.432866238 1.457182818 1.439958699 1.455269503 1.422936942 1.43835328 1.430189018 1.42469929 1.435245309 1.452508917 1.421936224 1.405483153 1.425776637 1.429402944 1.45481713 1.420765483 119717607 acetylglucosaminidase Nocardioides sp. JS614 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 1.111794344 1.136742704 1.156661947 1.138170933 1.14369345 1.137142785 1.124937682 1.108709599 1.114686785 1.113794789 1.152498036 1.117244852 1.147085316 1.120342619 1.132398774 1.121446239 1.137650471 1.123846551 256828632 phn Desulfomicrobium baculatum DSM 4028 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfomicrobiaceae;genus:Desulfomicrobium;species:Desulfomicrobium baculatum; 0.86203319 1.03290333 0.819492764 0.924499337 0.867918787 0.922033687 0.966242478 0.881133326 0.919868607 0.888700485 0.959703303 0.843004841 0.885792831 0.969705855 302389123 CsoS1_CcmK Thermosediminibacter oceani DSM 16646 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacterales Family III. Incertae Sedis;genus:Thermosediminibacter;species:Thermosediminibacter oceani; 1.277448974 1.291688674 1.275739999 1.29004765 1.27362138 1.292098719 1.265468278 1.287936839 1.279100855 1.274047835 1.331323218 1.291042567 1.243853097 1.237454405 1.238317348 1.252486787 1.26656014 1.275329805 209522393 exaa(moxf) Burkholderia sp. H160 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 0.987757054 1.010982534 0.973922654 0.951467194 0.914455711 0.943276723 0.872731316 0.91809914 0.960398324 0.993460845 0.927074901 0.955386277 0.895900901 0.950229199 0.897860833 0.905016178 0.976402603 1.009393712 323471272 poba Arthrobacter phenanthrenivorans Sphe3 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter phenanthrenivorans; 0.833518551 0.806435831 0.794765903 0.786466904 76803740 alkb uncultured bacterium Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria; 1.488792627 1.459013297 1.428053851 1.461742163 1.417437404 1.472774717 1.399132045 1.420330954 1.436359051 1.427668283 1.422716443 1.437915604 1.398783105 1.384805683 1.398723123 1.416632974 1.45026834 1.434897759 284388657 amyA unidentified Carbon Cycling Carbon degradation Starch 0.802476374 0.792276098 0.821813031 0.837696439 0.796806149 0.833076145 0.810088405 0.834426611 0.833751187 147886056 phenol_oxidase uncultured bacterium Carbon Cycling Carbon degradation Lignin superkingdom:Bacteria; 0.993476882 1.052183626 0.929129706 1.015836675 0.947670122 1.01398996 0.938554452 0.95396905 0.985440291 1.013533243 0.989377521 0.972883808 0.987476323 1.036309277 0.951059484 0.987078947 0.977445856 1.030584034 14023205 fthfs Mesorhizobium loti MAFF303099 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 0.997800318 0.896200773 0.886834802 0.91951889 0.800983438 0.763247218 341616214 ppx Citromicrobium sp. JLT1363 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Citromicrobium; 1.300982275 1.240763912 1.251945995 1.248888223 1.210501523 1.216837378 1.134180839 1.197305571 1.259144476 1.240133017 1.231175481 1.231622814 1.209337757 1.170868294 1.162268575 1.19579697 1.267185208 1.237138376 112462315 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.82790895 0.879163996 0.887089134 0.858922835 328843106 RgaE Asticcacaulis biprosthecum C19 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis biprosthecium; 1.000148944 0.984976059 0.991637193 0.988664384 0.999305672 0.998449049 1.018688298 1.007834854 1.010671104 0.996630865 0.987976367 0.977861944 0.986967647 0.935154633 0.926082868 0.929993255 1.014601075 0.988264774 118617205 amyA Mycobacterium ulcerans Agy99 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium ulcerans; 0.882477401 0.888190631 0.844031953 0.891396214 0.895997121 0.967686699 0.900838433 0.886582273 0.893160703 0.890900561 0.913963169 0.906877103 0.883153631 0.855345738 0.850518456 0.871438235 0.928802207 0.881237406 29465996 norb uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.095437172 1.06631412 1.074968159 1.126884333 1.031255705 1.090652978 1.060503987 1.081327204 1.082629421 1.052086899 1.065475582 1.085357515 1.032029631 1.038398382 1.015927633 1.042552059 1.120704596 1.054241202 86360333 cmci Rhizobium etli CFN 42 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 0.828193379 0.840481777 0.795847138 0.868389487 0.82317777 0.828501703 0.800392916 0.825709205 0.802996965 0.808961166 0.813876452 0.856088846 0.88181415 23867886 nifh unidentified nitrogen-fixing bacteria Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.919866893 0.93868184 0.932331611 0.929107545 0.879929245 0.95879119 0.917303456 0.883452696 0.928388344 0.940772566 0.852248651 0.922709495 0.880055967 0.853738193 0.824869348 0.899949463 0.901196911 0.945287848 84510149 GAPDH_Calvin Loktanella vestfoldensis SKA53 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Loktanella;species:Loktanella vestfoldensis; 1.330281471 1.327580179 1.341007154 1.411896878 1.323682727 1.347522483 1.336107447 1.341957925 1.321175627 1.310120031 1.349437326 1.356422335 1.320591325 1.278307356 1.322607069 1.32252361 1.344383834 1.288036619 116740541 xyla Listeria welshimeri serovar 6b str. SLCC5334 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Listeriaceae;genus:Listeria;species:Listeria welshimeri; 0.894138336 0.866004766 0.875166884 0.959677511 0.899952375 0.854720494 0.864706762 0.830269127 0.8563256 0.895083989 0.891469375 0.885482505 0.876293083 0.870995562 0.812544506 0.849388079 0.881156679 182634818 cysJ Beijerinckia indica subsp. indica ATCC 9039 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Beijerinckia;species:Beijerinckia indica; 1.022762314 0.992911812 1.019531471 1.033502943 0.970313873 0.977264404 0.987159265 0.990813205 1.020820474 1.003984885 0.948940856 1.02080732 0.961709516 0.933803862 0.938080151 0.943621214 0.998959202 0.984013455 15077499 dsrB Desulfoarculus baarsii Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfarculales;family:Desulfarculaceae;genus:Desulfarculus; 1.011725056 0.989775938 0.976994363 0.99672407 0.96599152 0.990571368 0.965819215 0.965930918 0.939732581 0.945172469 0.938762169 0.970937364 0.90071767 0.910787332 0.915374512 0.921045286 1.006975873 0.991281275 226347212 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.01400943 1.061199587 1.04310752 1.002552881 0.958452092 0.993004683 0.957982323 0.990711512 1.026668679 1.009663932 0.984159629 1.014426206 0.941556356 0.961708921 0.954507743 0.939626935 1.008929752 1.056486736 119695017 pcpb Mycobacterium sp. KMS Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 0.969318522 1.002755983 0.964628234 0.96317557 0.94341352 1.011499738 1.026377721 0.976071873 0.95457288 0.965995542 1.051655771 0.991202792 0.945619263 0.949402351 0.878753939 1.020087108 0.949432324 1.013562822 363641365 xylanase Tannerella sp. 6_1_58FAA_CT1 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Tannerella; 0.944256109 0.964186892 0.966813603 0.911676053 0.921748377 0.946025284 0.911054521 0.911714284 0.963588106 0.962329679 0.94607563 0.963110885 0.894512699 0.935892103 0.895686347 0.909308977 0.957748119 1.012239718 167646139 chnb Caulobacter sp. K31 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 1.075744436 1.047687584 1.079809972 1.095152844 1.080237165 1.079897516 1.085273682 1.089885212 1.072415085 1.061607237 1.053545266 1.088063219 1.047957323 1.051878285 1.072675937 1.050070292 1.074515415 1.045066274 295096817 cda Enterobacter cloacae subsp. cloacae NCTC 9394 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter cloacae; 1.008899658 0.997239346 1.038335316 0.999063715 0.974171939 1.034936033 0.932258267 0.939473923 1.002236125 0.969098559 0.94897807 0.955116174 0.907743936 0.986336567 0.909362882 0.953320211 0.999116058 1.008385089 261283308 pme Paenibacillus sp. Y412MC10 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 1.068582591 1.042557554 1.087417857 1.112306674 1.080007809 1.090682861 1.093416932 1.100979928 1.110559248 1.139244648 1.053233566 1.074878569 1.059751847 1.069191762 1.047622036 1.043358903 1.049691103 1.065893368 56962348 xyla Bacillus clausii KSM-K16 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus clausii; 0.772534333 0.804961257 0.87665714 0.819123724 0.817699934 0.846181046 0.826898382 0.835845967 0.848632688 0.851796708 0.806931058 0.808202139 0.864014923 0.832304745 0.842961046 0.850713944 0.850533449 21219070 endoglucanase Streptomyces coelicolor A3(2) Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 1.094630129 1.081603663 1.036950156 1.028179904 0.972218943 1.040474634 0.963940168 0.993200477 1.027578492 1.027904873 0.99868253 0.979795276 1.012220423 1.039168645 0.958917234 0.991411075 1.034732542 1.05577195 336300658 hyaluronidase Paenibacillus mucilaginosus KNP414 Carbon Cycling Carbon degradation hyaluronic acid superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 1.140537079 1.129516884 1.097806771 1.086676718 1.082436764 1.140809281 1.084393291 1.090659951 1.072089398 1.089959732 1.162923786 1.118363375 1.04606051 1.113194375 1.059903353 1.071125439 1.066743355 1.103073476 51872731 chitinase uncultured organism Carbon Cycling Carbon degradation Chitin 0.871401204 0.782292847 0.83158573 0.874859876 0.823428654 0.850452376 0.892184988 0.794528067 0.847148606 0.813388532 0.853873876 0.879061391 0.825933025 0.837808011 178925573 narb uncultured bacterium Nitrogen Assimilatory N reduction NA superkingdom:Bacteria; 0.834974362 0.872771727 0.823129258 0.922248872 0.828686017 0.868337349 0.881813525 0.84443229 0.949897129 0.897461922 0.84852751 0.861906851 0.928297621 0.856555021 0.911104136 0.880959587 0.885303693 357018601 cdh Mycobacterium thermoresistibile ATCC 19527 Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium thermoresistibile; 0.940881572 0.935004252 0.913075989 0.926576592 0.911064812 0.899582324 0.885937792 0.899439063 0.915876109 0.934134876 0.882575333 0.874514819 0.874862235 0.87110438 0.830275785 0.869706272 0.921178113 0.945480564 227498100 acetylglucosaminidase Actinomyces urogenitalis DSM 15434 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces urogenitalis; 1.030290575 1.041033131 1.000005647 1.022131954 1.008483272 1.041909952 1.018164645 1.071328641 1.024879242 1.025887884 1.030210444 1.028393497 0.976350755 1.038688796 0.965302651 0.984720743 1.00106149 1.071814934 78102077 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 1.045491893 1.00268547 1.004776766 1.011388622 0.976606508 0.991974698 0.934032936 1.019656381 1.03050643 0.979030393 0.975269486 1.021498324 0.946531892 0.96447885 0.947794697 0.991948314 1.000994128 0.993870307 2588983 phdi Nocardioides sp. Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 1.035948617 1.009434086 0.990851641 1.026568336 0.996701136 0.961664849 0.93665814 1.000549486 1.005097382 0.998216993 0.978046312 0.96357982 0.957157154 0.941929762 0.972077037 0.997803914 0.985981682 381157962 GAPDH_Calvin Thiorhodovibrio sp. 970 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiorhodovibrio; 0.897815633 0.907920534 0.81839534 0.86817804 0.908736856 0.870931063 0.93874236 0.891128846 0.880855318 0.858820618 0.852979825 0.864080802 0.851009063 0.780791045 0.817910926 0.865207292 320527927 amyA Solobacterium moorei F0204 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Erysipelotrichia;order:Erysipelotrichales;family:Erysipelotrichaceae;genus:Solobacterium;species:Solobacterium moorei; 1.032905471 1.072358736 0.988824282 1.036557813 1.035589377 1.050703783 1.012223178 1.023289043 1.035769744 1.068817529 0.95491337 1.006917411 1.014214182 0.983709781 0.916418944 0.978362292 1.056329074 1.050124686 163261088 cysJ Bordetella petrii Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella; 1.289751218 1.298935671 1.294558628 1.281363563 1.278469392 1.303090825 1.281444954 1.284613015 1.262478369 1.254187102 1.282635553 1.28983575 1.268351703 1.245295353 1.252648245 1.264004302 1.305954823 1.262961871 256729338 pec_Cdeg Nectria haematococca mpVI 77-13-4 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Fusarium;species:Nectria haematococca; 0.949202962 0.954631604 0.910577848 0.979422938 0.91628966 0.967990078 0.95072524 0.931207696 0.907067238 0.968629982 0.891236369 0.941937621 0.948648061 0.932186509 0.910756121 0.927758011 0.995693603 0.938081911 383644164 B_lactamase_A Sphingomonas elodea ATCC 31461 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas elodea; 0.935476815 0.92829039 0.973329816 0.934146639 0.908654346 0.908415929 0.955525304 0.983141366 0.945104459 0.921224316 0.864540845 0.9305372 0.88137457 0.850465731 0.846033119 0.845695674 0.922885436 0.913758264 21217705 rubisco uncultured bacterium Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria; 0.947154806 0.992262919 0.961515398 0.96372514 0.952222517 0.989941739 0.949109227 0.897252191 0.944453243 0.963182439 0.909353848 0.928864728 0.902978495 0.881545448 0.923140627 0.88464154 0.978068982 0.979128923 114542542 alkb Roseovarius sp. HTCC2601 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pelagibaca;species:Pelagibaca bermudensis; 1.369089935 1.331329191 1.320353301 1.349129539 1.288599496 1.333842173 1.279190202 1.301461636 1.320430933 1.309013645 1.324285255 1.33079843 1.28993674 1.284025841 1.288047271 1.304022109 1.330289024 1.31043945 71383742 nasa Synechococcus sp. WH 8008 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 0.800962877 0.794845027 0.844376384 0.825649751 0.811459571 0.847909489 268311625 pectinase (pectate_lyase) Thermomonospora curvata DSM 43183 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Thermomonosporaceae;genus:Thermomonospora;species:Thermomonospora curvata; 0.886773162 0.871006072 0.874542299 0.903018946 0.855625781 0.876995877 0.836381672 0.885790366 0.881708019 0.819178169 0.809792198 0.845748206 0.829654566 0.891738198 0.850655559 0.882587386 0.864184989 0.898096006 192360166 mannanase Cellvibrio japonicus Ueda107 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio;species:Cellvibrio japonicus; 0.908749003 0.884220092 0.867963094 0.898752819 0.920150678 1.014698207 0.917948805 0.823090103 0.97686293 0.911288015 0.912931205 0.932441138 0.95125676 0.94576894 0.911154285 0.879014725 0.902865162 318040833 nira Synechococcus sp. CB0101 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 0.92075593 0.870753993 0.826706236 0.886285041 0.818834097 0.831935119 0.859155887 0.837323503 0.85926442 0.848461775 0.859054515 0.84338514 0.845318125 0.884740342 0.956901498 0.848671877 163261665 tktA Bordetella petrii Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella; 0.881464793 0.903878288 0.865623541 0.832561829 0.804296953 0.809343436 0.794108953 0.831179418 0.860726925 0.895648283 293326096 chitinase Shewanella violacea DSS12 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella violacea; 0.775372073 0.773781716 0.819369053 0.778271602 0.800178136 0.801399288 0.797213284 0.810451714 0.831083454 126347556 inulinase Streptomyces ambofaciens ATCC 23877 Carbon Cycling Carbon degradation Inulin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces ambofaciens; 1.079101331 1.104337431 1.111526419 1.093978492 1.120277979 1.092259714 1.135605536 1.085694063 1.081696471 1.095474675 1.114784283 1.114326343 1.066748076 1.067500836 1.055899095 1.070480498 1.16042108 1.15089826 381202148 B_lactamase_A Sphingobium yanoikuyae XLDN2-5 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium;species:Sphingobium yanoikuyae; 1.018753036 0.999298621 0.913741311 1.051684881 0.974490393 0.976798428 0.985627489 0.989347752 0.975884207 0.982826613 0.970331373 0.984236049 0.95317556 0.942950219 0.912158364 0.980728689 1.020644677 0.996512439 398210177 trza Pantoea sp. YR343 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 0.915456204 0.896890546 0.901838804 0.938927437 0.896067191 0.897223127 0.85840348 0.872306701 0.899486835 0.812526199 0.83819264 0.866072318 0.858978012 0.859913006 0.870919273 0.822315974 0.924364909 0.922395659 332592150 fthfs uncultured bacterium Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria; 1.2516794 1.24449088 1.217042455 1.264798581 1.229069119 1.207484576 1.243223269 1.246933249 1.258572366 1.233186769 1.218477567 1.247362624 1.227231691 1.189122578 1.15420066 1.230939354 1.212101698 1.233023798 319438400 ppx Dietzia cinnamea P4 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dietziaceae;genus:Dietzia;species:Dietzia cinnamea; 1.2669052 1.202216134 1.191332921 1.252139217 1.237403242 1.201321037 1.213142307 1.226731282 1.221225443 1.192435157 1.174589613 1.231282834 1.210831983 1.176940447 1.184043094 1.189895696 1.223827642 1.197018454 2117031 rgl Aspergillus niger Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 0.787747976 0.816224416 0.781373105 0.804241658 0.848552286 0.782628966 0.808182478 0.810508353 0.805165193 0.790905702 0.83021059 374987753 linb Streptomyces bingchenggensis BCW-1 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces bingchenggensis; 1.097957285 1.063847731 1.048803695 1.041743535 1.034049439 1.054726311 1.017248487 1.006683949 1.026025907 1.025666481 0.982779734 0.969715369 0.973354959 0.988515816 0.978003986 0.967056729 1.067359133 1.068933381 124258969 vana Methylibium petroleiphilum PM1 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 0.960938312 0.973862423 0.93778279 0.973544441 0.949931568 0.95000696 0.948222159 0.96736541 0.975365761 0.948108031 0.918049248 0.986111986 0.94778674 0.944831082 0.925949692 0.901327907 0.915688147 0.999414475 311113754 nirb Rothia dentocariosa ATCC 17931 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Rothia;species:Rothia dentocariosa; 0.86457402 0.84252737 0.891389628 0.880447315 0.888234965 0.892682567 0.922634048 0.866455336 0.874986635 0.81768086 0.848755874 0.810877792 0.831897446 0.812695616 0.884602962 0.936670854 150014764 rubisco uncultured alpha proteobacterium Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 1.326914753 1.29215021 1.310066688 1.307138287 1.300925102 1.30475277 1.299128068 1.306572212 1.288181286 1.273244509 1.291809534 1.28905435 1.279799272 1.244701697 1.26920211 1.265502067 1.298975098 1.248142956 335999449 codh Treponema azotonutricium ZAS-9 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema azotonutricium; 0.912988903 0.87650312 0.967947352 0.887576187 0.920740537 0.93827767 0.872199813 0.941779851 0.940087812 0.894515314 0.957014999 0.936105385 0.88768284 0.881904005 0.869136304 0.946278802 0.900339744 0.930720011 359732604 ppx Rhodococcus pyridinivorans AK37 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus pyridinivorans; 1.237415935 1.215963106 1.24651363 1.171278672 1.234218282 1.238335306 1.161373802 1.168008485 1.202631539 1.181391403 1.200695112 1.199931307 1.213497356 1.182157938 1.207177318 1.203429273 1.233705215 1.194021412 149809645 SoxV Roseobacter sp. AzwK-3b Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 0.995131951 1.038483414 1.03424441 1.075058775 1.009046674 1.064767282 1.003692562 1.026115464 1.048348553 0.995305792 0.975710348 1.024261901 0.994139053 0.9850972 1.00832457 1.006212709 0.995848551 1.014636991 224823588 arsc Pseudogulbenkiania ferrooxidans 2002 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Pseudogulbenkiania;species:Pseudogulbenkiania ferrooxidans; 0.767551988 0.805495669 0.765457909 0.821709505 299793296 pcag Amycolatopsis mediterranei U32 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 1.102433594 1.12518173 1.038763985 1.044725334 1.049723159 1.094580273 1.034511639 1.031239635 1.065193736 1.076144612 1.078820194 1.057121476 0.989722188 1.058730873 0.984833262 1.00256595 1.05348175 1.100487601 46308014 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.827145076 0.850886763 0.878143379 0.854124676 0.810146725 0.814780884 0.860064051 0.890307432 117927811 endochitinase Acidothermus cellulolyticus 11B Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Acidothermaceae;genus:Acidothermus;species:Acidothermus cellulolyticus; 0.941911844 0.87604286 0.859599957 0.811315147 0.865600448 0.9595057 0.869916134 0.810185959 0.868944457 0.849325744 0.880204621 0.818526705 0.818907771 0.977769588 0.817274524 0.941386865 0.908653006 83645847 chitinase Hahella chejuensis KCTC 2396 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Hahellaceae;genus:Hahella;species:Hahella chejuensis; 1.07930348 0.881994626 0.952362699 0.87666889 0.866427426 0.830447802 0.888233509 0.916884718 0.950126987 0.895462292 0.996555591 0.861211323 0.811888912 0.843307368 0.82834776 0.899125786 0.835717277 0.895442072 149232839 terc Pedobacter sp. BAL39 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Pedobacter; 0.788804041 0.800905535 0.822318597 0.860450487 0.78933423 0.955654441 226346720 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.229347275 1.243630429 1.197634444 1.211128677 1.196025724 1.204012039 1.18746255 1.22034429 1.194780862 1.19831298 1.187416291 1.209565623 1.186825363 1.182064964 1.18616031 1.191316348 1.214099318 1.190433319 66876307 hcab Rhodococcus sp. TFB Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 0.9949969 0.972306712 0.996009774 0.981960527 0.960805932 0.988757381 0.950980809 0.976105186 0.978730483 0.964190419 0.956782263 0.970918572 0.970700295 0.995606745 0.948173729 0.985337356 0.985219653 0.962755164 377529356 mer Gordonia sputi NBRC 100414 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia sputi; 0.981353158 0.980138271 0.950451078 0.969431168 0.948182762 0.948057098 0.910363589 0.915267945 0.963949061 0.95489514 0.915241775 0.890313797 0.913106875 0.951593913 0.878208247 0.919273887 0.966081591 1.009134524 163667975 acetylglucosaminidase Chloroflexus aurantiacus J-10-fl Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aurantiacus; 0.887842679 0.94417023 0.97510317 0.922293936 0.976536422 0.95248897 0.982379487 0.940863795 0.937851919 0.973020515 0.935323226 0.909639846 0.912884386 0.84818601 0.850527663 0.90397177 0.913022182 0.904727631 118567780 dsrB Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica) Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;species:Candidatus Ruthia magnifica; 0.771793112 0.834843948 0.826378897 0.887227103 0.904196185 0.85054683 0.864108168 0.895932887 0.793437535 0.874600633 0.841021038 0.8257207 0.847862193 0.811735427 0.866383528 0.851808244 297157576 chitinase Streptomyces bingchenggensis BCW-1 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces bingchenggensis; 1.22675765 1.194938629 1.198141409 1.173782759 1.197991682 1.229533364 1.207726882 1.204429577 1.192528577 1.184820817 1.198727385 1.191651433 1.212848925 1.154226005 1.165765543 1.146157321 1.20888173 1.169797725 326196899 cutinase Gordonia neofelifaecis NRRL B-59395 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia neofelifaecis; 0.924029128 0.892871853 0.933108354 0.92286886 0.882953605 0.862112129 0.930086644 0.925222354 0.881703187 0.832816041 0.875108156 0.788256922 0.905035194 0.863965605 0.893839205 0.91661492 224520161 pme Bacteroides cellulosilyticus DSM 14838 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides cellulosilyticus; 0.981116343 0.996490617 0.971514036 1.084325938 0.987874077 0.992559503 1.142752452 1.036550975 1.029874235 0.962840317 1.037290656 1.015663551 0.995392382 0.942401457 0.999374809 0.978301187 0.987185485 0.944682774 336117569 vgb Microlunatus phosphovorus NM-1 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Microlunatus;species:Microlunatus phosphovorus; 1.004546933 1.022544037 0.993282641 1.044337891 0.945029281 0.942249767 0.949729393 0.971553641 1.004661522 0.939516292 0.968762456 0.996480665 0.951493205 0.935359502 0.922935795 0.9638122 1.031684389 0.966794943 162072864 dsrB Halochromatium salexigens Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Halochromatium; 1.030000114 1.009365473 1.04254874 1.047236044 1.027072057 1.023291859 1.02753241 1.032988863 1.033105998 1.0209396 0.990605713 1.048267374 1.046604677 0.981288332 0.998461408 1.019940891 1.079720454 1.038783638 398043222 catb Burkholderia sp. BT03 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 0.820953314 0.865596119 0.821329671 0.830258174 0.869048368 0.817071231 0.873145218 0.818459255 0.882717165 0.858675112 0.826273174 0.858472356 0.848802543 0.881417496 153887146 ophc Ralstonia pickettii 12D Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 0.776503736 0.816062307 0.859782424 0.844384483 0.814635962 0.879450632 0.830048237 0.849121307 0.848425971 2765433 vdh Pseudomonas putida Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 1.109687437 1.094921574 1.084999016 1.072824546 1.071518972 1.092928252 1.080257083 1.069088472 1.066288445 1.077875621 1.044314719 1.066280689 1.028207275 1.018033959 1.012304408 1.021541265 1.089736056 1.091359728 302673144 endochitinase Schizophyllum commune H4-8 Carbon Cycling Carbon degradation Chitin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 0.946575819 0.951199261 0.943346853 0.949858283 0.854085554 0.9496808 0.914572585 0.928107535 0.93417882 0.930694202 0.901218181 0.920878385 0.869424902 0.875603645 0.79537005 0.869655509 0.951054283 0.916332086 50954857 gdh Leifsonia xyli subsp. xyli str. CTCB07 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Leifsonia;species:Leifsonia xyli; 1.814151911 1.79447605 1.795503595 1.721048438 1.773754248 1.838135585 1.781270638 1.773860322 1.738930193 1.76370904 1.78269087 1.730285592 1.747564655 1.745296736 1.790027945 1.780604202 1.762914939 1.771915788 302383233 mdlc Brevundimonas subvibrioides ATCC 15264 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Brevundimonas;species:Brevundimonas subvibrioides; 0.933451624 0.90591057 0.896521596 0.936881577 0.913937657 0.901363593 0.907482094 0.936539097 0.902953824 0.91405856 0.917498232 0.930758468 0.892412286 0.891855487 0.879479752 0.88811164 0.924900488 0.924793422 326440094 alginase Streptomyces clavuligerus ATCC 27064 Carbon Cycling Carbon degradation Alginate superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces clavuligerus; 0.867064095 0.854919388 0.878723453 0.858657619 0.910948877 0.837991206 0.868846673 0.848604001 0.896532285 0.829546099 0.838215165 0.860706196 0.948165617 0.871813336 0.873344617 0.88278886 0.901455041 0.876604414 404435069 alkb uncultured bacterium Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria; 0.927341729 0.919112721 0.918554851 0.909783252 0.932330987 0.920818278 0.90891101 0.909945889 0.913064285 0.893143789 0.921222519 0.885600323 0.821142125 0.844778643 0.863253011 0.820835788 0.915134317 0.929560173 237880003 nagg Burkholderia glumae BGR1 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia glumae; 0.963079559 0.925672487 0.949018861 0.960919942 0.97607555 0.946948228 0.976850473 0.959438316 0.93645833 0.933785594 0.903665397 0.949240204 0.90889366 0.890306257 0.891631237 0.876158844 0.921498354 0.95836821 77378451 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.148020589 1.156040411 1.137567502 1.138085948 1.113101486 1.14352132 1.086267544 1.11315605 1.082294556 1.096970481 1.085591893 1.142188092 1.106088776 1.049185056 1.082610275 1.116061632 1.144122887 1.11953301 116626210 amyA Candidatus Solibacter usitatus Ellin6076 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 0.85373186 0.826502596 0.85710711 0.797010344 0.889335721 0.85691047 281401445 amyA Prevotella oris F0302 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella oris; 0.811456349 0.808522517 0.831480637 0.858538232 0.852380663 0.826363533 0.800719361 31620970 nifh Paenibacillus durus Nitrogen Nitrogen fixation NA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 0.9149925 0.859049134 0.89240931 0.903502567 0.943098523 0.935239729 0.943191516 0.953101724 0.940347435 0.905519402 0.924734364 0.983332874 0.876438877 0.806616412 0.827158249 0.902312197 0.919602745 0.886920888 300390303 fthfs uncultured bacterium Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria; 0.947886718 0.951285126 0.917547928 0.969512083 0.871818242 0.899353919 0.901276176 0.953625762 0.964883681 0.945618968 0.90005427 0.959135188 0.860844272 0.897717792 0.876530447 0.918184765 0.953856093 0.989061216 291439842 ara Streptomyces ghanaensis ATCC 14672 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces ghanaensis; 1.010179334 0.9842579 0.956633131 0.976468505 0.968412661 0.973186682 0.949993286 0.936957382 0.960868945 0.905531316 0.952943711 0.95810633 0.926764175 0.905166656 0.905275267 0.912534505 0.99373783 0.970410768 150956671 arsc Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 0.820154066 0.958302128 0.819923595 0.888941641 0.819790915 0.835141605 0.80783989 0.903722106 1.028616987 0.906438312 0.975052439 0.964823895 374620533 vgb gamma proteobacterium HIMB55 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 1.029331791 0.98230221 1.002490521 0.992777877 1.072068776 1.054895625 0.997475941 0.999092048 0.983576014 0.992977578 1.118097518 1.081077733 0.992893378 1.000945279 1.002261039 0.989034351 1.060531671 0.978092796 284447990 nitrate_reductase uncultured eukaryote Nitrogen N Assimilation NA superkingdom:Eukaryota; 0.966829114 0.943002247 0.97262809 0.987406293 0.951618111 0.943595021 0.947429608 0.894132101 0.953739071 0.915006768 0.930272186 0.929770202 0.90925629 0.901888176 0.881017139 0.909922427 0.969754392 0.955195252 339624330 fthfs Fructobacillus fructosus KCTC 3544 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Leuconostocaceae;genus:Fructobacillus;species:Fructobacillus fructosus; 0.833762865 0.876861839 0.856701197 0.871908464 0.867777061 0.840306367 0.843379607 0.872293124 0.855061409 0.827216834 0.875837623 0.833775096 0.8361535 0.812521936 0.862491311 0.871606414 334102099 ppx Sphingobium chlorophenolicum L-1 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium;species:Sphingobium chlorophenolicum; 0.81484681 0.806531257 0.811590212 0.836165567 0.810242182 0.783066827 0.801046498 0.83120486 0.846078092 0.815119747 0.799686418 0.84469785 0.800671848 0.855109631 0.878019772 253575649 tehb Paenibacillus sp. oral taxon 786 str. D14 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus sp. oral taxon 786; 1.108902861 1.094296125 1.137438951 1.127477144 1.175798713 1.164325406 1.178650664 1.143229683 1.1339101 1.145783441 1.240017533 1.163133558 1.132321908 1.112190829 1.180925753 1.11459144 1.128794094 1.122216345 386848613 amyA Actinoplanes sp. SE50/110 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes; 0.993842786 0.961576051 0.991478532 0.975614676 0.985881545 1.003563092 0.978435821 0.984559728 0.979073251 0.986390897 0.983043428 0.98928925 0.933043709 0.965522159 0.928291531 0.939159755 0.971372206 0.967710647 124260874 chnb Methylibium petroleiphilum PM1 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 0.8160903 0.820516507 0.833613456 0.832790428 0.866207438 0.826761509 0.79143308 0.797393702 0.837593779 220931089 amyA Halothermothrix orenii H 168 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Halanaerobiales;family:Halanaerobiaceae;genus:Halothermothrix;species:Halothermothrix orenii; 0.849871322 0.799984665 0.826365507 0.924715331 0.839595111 0.852678463 0.863978433 0.883050968 0.979428097 0.8451358 0.871955788 0.885728813 0.876497764 0.851181235 0.863037842 377820672 acetylglucosaminidase Burkholderia sp. YI23 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 1.345123533 1.296273243 1.320881055 1.322367283 1.27727256 1.295994609 1.249027241 1.296180995 1.306532446 1.305050683 1.305056762 1.321324687 1.282391067 1.274608567 1.255412225 1.279311632 1.324691224 1.288111069 398252598 bphd Pseudomonas sp. GM84 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.866911625 0.881104524 0.876977109 0.884792659 0.889938572 0.803396926 0.82487982 0.877011398 0.876752003 0.820690594 0.807490558 0.899712206 0.868785946 365858548 pcpe Acetobacteraceae bacterium AT-5844 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae; 0.886568338 0.854734672 0.895571709 0.9196061 0.886536701 0.920648689 0.914911616 0.91719224 0.932774954 0.914549397 0.899171374 0.896348752 0.886839671 0.829596159 0.832289465 0.814491894 0.911680777 0.853305463 56680518 pcag Silicibacter pomeroyi DSS-3 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 1.223039447 1.152200256 1.111927327 1.149368877 1.115034683 1.218313203 1.148094898 1.105507348 1.108435621 1.138701541 1.213600782 1.1198695 1.144234232 1.122120948 1.106781118 1.137533225 1.149191686 1.139718102 121553538 PRI Verminephrobacter eiseniae EF01-2 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 0.967181955 0.990647671 0.955807116 0.984964475 0.931992052 1.064183153 0.910338603 0.956810951 0.959336361 0.936607311 0.93919407 0.940634345 0.893607642 0.914841691 0.831892715 0.903657629 0.985234774 0.993976386 336406486 amyA Bacteroides sp. 1_1_30 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides; 1.030389444 1.035034323 0.988756793 1.023466334 1.01029845 1.029429064 0.961332135 1.016407484 0.981524034 0.997359067 0.974904897 0.995795127 1.007754335 0.975699564 0.92784074 1.027657379 1.025048502 1.043246283 254475804 GAPDH_Calvin Ruegeria sp. R11 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 0.976111166 0.979278565 0.940280381 0.974711051 0.93883353 0.977517593 0.92520698 0.920695206 0.961245883 0.986432197 0.951181815 0.986625133 0.886599663 0.93072031 0.870822805 0.899732637 0.968460284 0.984171346 374367149 vana Cupriavidus basilensis OR16 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus basilensis; 0.987782337 1.038932404 0.985407861 1.031600393 1.005448648 1.019579794 1.028773225 1.033188063 1.028610358 1.001274096 0.972139315 1.005116072 1.010314365 0.935445853 0.966677066 0.934046146 1.029559685 0.972002382 374374277 RgaE Niabella soli DSM 19437 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;genus:Niabella;species:Niabella soli; 1.10034743 1.019246056 1.045731421 1.017969098 1.007474619 1.013692703 1.006721308 0.977112271 1.066832019 1.067355913 1.017809564 1.044980466 1.006831859 1.01817163 0.981236727 1.034211221 0.981599537 1.059674874 60326784 nifh uncultured nitrogen-fixing bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.905031075 0.913111137 1.006169817 0.978459354 0.966930999 0.926476562 0.893792812 0.909986293 0.949784316 0.902770008 1.112557544 0.945860092 0.905716194 0.906628305 0.885945572 0.878502468 0.917898571 0.963051544 77966700 pcpe Burkholderia sp. 383 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 1.088447163 1.142438919 1.099382807 1.074290548 1.085168571 1.134681979 1.094072768 1.086803762 1.059230426 1.140351391 1.072118523 1.111763897 1.084308304 1.064598185 1.051586334 1.103441083 1.071308891 1.112086355 377531517 bend Gordonia terrae NBRC 100016 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia terrae; 0.939346418 0.938621475 0.854763729 0.922365757 0.837497944 0.947595503 0.877322322 0.821898302 0.862605991 0.822769501 0.887264969 0.841245947 0.848318102 0.853637478 0.943493172 0.883359249 214030141 pgk Ruegeria sp. R11 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 0.781511713 0.798949487 0.893032684 73537968 tfth Ralstonia eutropha JMP134 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 1.181625273 1.238217376 1.186886399 1.152265515 1.171251747 1.236178572 1.139706802 1.157727838 1.1535447 1.183164925 1.180418111 1.160365532 1.154402369 1.19075941 1.126940545 1.144854831 1.170987985 1.20506396 83634171 nosz Hahella chejuensis KCTC 2396 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Hahellaceae;genus:Hahella;species:Hahella chejuensis; 0.853020257 0.85972946 0.864048731 0.867238771 0.823452043 0.845569132 0.852632884 0.867612253 0.822673011 0.877779422 0.861709482 209521039 pcpe Burkholderia sp. H160 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 1.131067017 1.136014548 1.124488253 1.09517407 1.147246639 1.179164913 1.112174951 1.096516985 1.068900777 1.122825878 1.137987396 1.139614299 1.128271577 1.130324139 1.110174218 1.157293519 1.087747952 1.156261749 118738719 ophc Dinoroseobacter shibae DFL 12 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 0.821958423 0.825463825 0.868681616 0.873023563 0.885555159 0.859532366 0.893869696 0.856867304 0.827075937 0.892570088 0.96079966 0.85862891 0.835290469 0.824927154 0.78978686 0.816082344 0.835239875 390613788 badh Mycobacterium chubuense NBB4 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium chubuense; 1.139504019 1.208591957 1.1321949 1.12988112 1.13512532 1.123515429 1.126801344 1.135821755 1.1405838 1.139723367 1.123604178 1.147622197 1.091531297 1.083505546 1.086831555 1.124929332 1.116796304 1.131249149 164606904 phdi Arthrobacter phenanthrenovorans Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 0.945198195 0.90743183 1.016031652 0.979121881 0.959731995 0.961188582 0.934015554 0.930056572 0.981199617 0.929659786 0.88926445 0.904952562 0.914468473 0.845979179 0.863298667 0.859072166 0.948282046 0.924414709 458468 chitinase Janthinobacterium lividum Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Janthinobacterium; 0.816060579 0.843709233 0.855050915 0.874934022 0.889435233 0.880755799 359361889 terc Achromobacter arsenitoxydans SY8 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter;species:Achromobacter arsenitoxydans; 0.908371073 0.879781529 0.866416878 0.873205506 0.805964819 0.829883407 0.831712085 0.856234123 0.823281954 0.83056637 0.841570163 0.931672043 0.911367787 29125958 nosz uncultured soil bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.200605182 1.22480622 1.149264317 1.160663313 1.171012322 1.219992522 1.155995704 1.206391232 1.185465337 1.193615494 1.151372843 1.158417154 1.16617287 1.186185648 1.136950316 1.183975844 1.190590043 1.21975122 308048821 amyA Ferrimonas balearica DSM 9799 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Ferrimonadaceae;genus:Ferrimonas;species:Ferrimonas balearica; 0.774237865 0.792124415 0.77398619 0.851252476 110283122 arsc Mesorhizobium sp. BNC1 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 1.120235328 1.069413875 1.020389313 1.104793414 1.037989313 1.083572295 1.065524 1.0846556 1.091930804 1.063719845 1.040517005 1.072944256 1.029641537 1.046376693 1.018863969 1.044142221 1.116809141 1.065249625 120404477 endoglucanase Mycobacterium vanbaalenii PYR-1 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 1.148684092 1.113104549 1.122409494 1.121296195 1.213032081 1.146080608 1.134547757 1.172693485 1.095093309 1.127231641 1.04511876 1.114520285 1.127959815 1.064128632 1.098234684 1.089610289 1.09559044 1.152210331 385151758 arsc Hoeflea sp. CH14 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Hoeflea; 0.82704729 0.821293782 0.838398964 0.825579257 0.82942317 0.820957672 0.859150675 0.821935125 0.81308643 0.833267377 0.888274972 258546008 norb Cardiobacterium hominis ATCC 15826 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Cardiobacteriales;family:Cardiobacteriaceae;genus:Cardiobacterium;species:Cardiobacterium hominis; 0.946813025 0.908218722 0.88917227 0.942487157 0.904404391 0.963402712 0.922129346 0.958090378 0.914942559 0.953601652 0.881762902 0.925707179 0.891893791 0.878254577 0.896057264 0.930978423 0.961814479 0.89808945 301109693 pectin_lyase_Oomycetes Phytophthora infestans T30-4 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;order:Peronosporales;genus:Phytophthora;species:Phytophthora infestans; 0.971373997 1.002986992 0.971426199 0.96703239 0.992472044 0.990486161 0.975576407 0.940048806 0.971052898 1.007924384 0.977258576 0.967972106 0.937316659 0.960805752 0.923114495 0.959624902 0.957775742 1.005769102 255957255 alkb uncultured bacterium Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria; 0.963047435 0.939685966 0.93471667 0.948651239 0.94591744 0.940829045 0.955675205 0.960692968 0.93416776 0.950507114 0.97669126 0.930535465 0.883082118 0.883297739 0.849910073 0.915466764 0.938647644 0.953379038 389938083 one_ring_12diox Burkholderia terrae BS001 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia terrae; 0.770014954 0.804626509 260652439 endoglucanase Streptomyces scabiei 87.22 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces scabiei; 0.9484363 1.020608052 0.963114882 0.955479162 0.953054616 0.965849029 0.92485788 0.911813745 0.93112105 0.899057709 0.912454695 0.931417677 0.954555594 0.947917736 0.866430207 0.940949673 0.970201382 0.955420458 296122944 amyA Planctomyces limnophilus DSM 3776 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Planctomyces;species:Planctomyces limnophilus; 0.950800557 0.906950725 0.880286496 0.921620774 0.872127862 0.88556271 0.873179754 0.888127105 0.917190144 0.928696341 0.923840027 0.903077709 0.864557579 0.828307348 0.912424768 0.893563324 0.94254317 0.916112086 74053703 one_ring_23diox Arthrobacter sp. 3YC3 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 1.257763793 1.23396325 1.212028407 1.224662318 1.2278941 1.25735295 1.221278793 1.227820206 1.213171025 1.191999709 1.221320914 1.213384258 1.206530845 1.184252998 1.193146521 1.207978338 1.23901234 1.23471666 238021853 nfsa_2 Kingella oralis ATCC 51147 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Kingella;species:Kingella oralis; 0.965503877 0.917589707 0.894902614 0.93471447 0.883430235 0.906820368 0.888511102 0.939104159 0.914023796 0.907077202 0.887640519 0.922704395 0.841275198 0.864275661 0.834945606 0.869095932 0.923719041 0.926608273 353192814 cutinase Mycobacterium rhodesiae JS60 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 1.251101347 1.202022769 1.200220059 1.252673537 1.217172615 1.231932423 1.213890429 1.248144367 1.225993104 1.206283645 1.203753662 1.245030487 1.20007126 1.201806875 1.207292067 1.229649807 1.222011535 1.170121648 385867144 alkb uncultured bacterium Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria; 0.810841678 0.881763543 0.829588181 0.860571303 0.871987766 0.878493527 0.853959897 0.858518573 0.84350765 0.876401206 0.834009333 0.827205039 0.839841542 0.892907791 0.831931092 0.887637502 0.841240213 0.897819958 145555695 GAPDH_Calvin Rhodobacter sphaeroides ATCC 17025 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 1.077535759 1.069737502 1.066012293 1.070274954 1.019282558 1.033199798 0.994767961 1.013688054 1.05778645 1.039315999 1.070589245 1.068532551 1.016485241 1.034585568 0.974821476 1.018473676 1.051393388 1.045362121 162072836 dsrB Thiocapsa roseopersicina Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiocapsa; 0.820977978 0.854685753 0.877496634 0.844517899 0.900274143 0.83998352 0.797022202 0.887327412 0.812428053 0.855290203 0.837494724 0.810280999 0.873045396 0.896784448 0.897151445 148657307 mcr Roseiflexus sp. RS-1 Carbon Cycling Carbon fixation 3-hydroxypropionate bicycle superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus; 0.866330357 0.940361139 0.868302485 0.92832986 0.857993551 0.885588759 0.87582108 0.888218755 0.903169651 0.89828391 0.852023118 0.859963426 0.819315997 0.845608627 0.80710827 0.885894341 0.948446678 46519947 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.883797449 0.839046313 0.927159251 0.893083287 0.87804729 0.867173153 0.855281598 0.862812923 0.917875135 0.850014865 0.876968198 0.887704569 0.811884553 0.824736517 0.958237821 0.837149466 0.898270471 0.903074659 312879074 chitinase Aminomonas paucivorans DSM 12260 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Synergistetes;class:Synergistia;order:Synergistales;family:Synergistaceae;genus:Aminomonas;species:Aminomonas paucivorans; 0.948660761 0.922215857 0.920723975 0.987433964 0.918165886 0.902481149 0.903536703 0.943978616 0.941990021 0.907108689 0.900814464 0.93892948 0.868976526 0.898661267 0.88160787 0.879336666 0.912145664 0.913578597 357025168 b_lactamase Mesorhizobium amorphae CCNWGS0123 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium amorphae; 1.059022032 1.092327738 1.111904815 1.223340841 1.133359001 1.150992317 1.125417248 1.075213846 1.057101499 1.125525152 1.091378759 1.086030724 1.103008481 1.100383933 1.092650536 1.17196505 1.100368675 1.149403676 148511181 nagg Pseudomonas putida F1 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 1.13270411 1.131062332 1.10904867 1.130209943 1.11793604 1.127653978 1.100960063 1.138591958 1.130617158 1.06368092 1.114254316 1.119377869 1.099613599 1.069298067 1.080837857 1.087758611 1.158620135 1.092953419 333391484 fthfs Centipeda periodontii DSM 2778 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Centipeda;species:Centipeda periodontii; 1.130069643 1.122864755 1.074653564 1.119518002 1.124853923 1.139367825 1.14364502 1.131879279 1.108711928 1.098319581 1.107285589 1.099361472 1.103412072 1.070130506 1.069782526 1.060332938 1.123887066 1.107166027 13488100 phn Mesorhizobium loti MAFF303099 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 0.976789579 0.9283227 0.91274344 0.959353004 0.924178254 0.925315065 0.898762513 0.928441015 0.958443795 0.933914636 0.921722943 0.915355418 0.90450946 0.919898928 0.896357975 0.932617006 0.958831807 0.924251943 389796736 xyla Rhodanobacter sp. 116-2 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Rhodanobacter; 1.270444241 1.279093059 1.259096593 1.255340588 1.243079468 1.302709609 1.253670892 1.249920179 1.250318356 1.254568998 1.257220416 1.246990626 1.252470643 1.224482467 1.207056777 1.209415167 1.298321647 1.257464466 317405870 cpnc Achromobacter xylosoxidans C54 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter;species:Achromobacter xylosoxidans; 1.117692111 1.06554327 1.075129257 1.146479821 1.106594092 1.063417892 1.081251557 1.106521759 1.097306951 1.057165287 1.071975441 1.105180359 1.076699566 1.047568212 1.074129139 1.034975508 1.119034974 1.079081321 148474782 napa uncultured bacterium Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria; 1.012946659 0.900498427 0.86681616 0.778556262 0.813186687 0.816818477 0.914834242 0.973463814 0.81956469 0.817340435 0.825156071 0.880810945 0.936685743 94417716 ppx Pseudomonas aeruginosa PA7 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 0.854585909 0.919424263 0.864497566 0.832451507 0.906328186 1.015940189 0.884993528 0.850429021 0.860912073 0.889820424 1.102745638 0.893313332 0.860584782 0.905009663 0.924984978 0.904909147 0.900679447 0.849057192 77378616 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.939926051 0.965517902 1.056735706 0.962213481 0.947038177 1.061978507 0.933359893 1.0038001 1.016665319 0.92383791 0.910185144 0.913280651 0.899990382 0.930390902 0.859176937 1.018515759 1.034064515 0.971706502 323471415 nahf Arthrobacter phenanthrenivorans Sphe3 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter phenanthrenivorans; 0.834624508 0.878229201 0.861530782 0.89961182 0.88315563 0.861389733 0.914449224 0.901883052 0.825731875 0.841230206 0.900808101 0.839697185 0.809102341 0.799369208 0.826826153 0.79165875 0.884195351 0.880697586 94311115 ppx Ralstonia metallidurans CH34 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 1.046772965 1.103801921 1.043580787 1.024767753 1.05166077 1.06568179 0.998407219 1.02012822 1.033257089 1.039826276 1.026882053 1.063048955 0.996689961 1.02390268 1.030030779 1.016094713 1.035111634 1.064291346 207744735 endoglucanase Ralstonia solanacearum IPO1609 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 0.855798119 0.864129009 0.865916865 0.857440365 0.831992716 0.885072505 0.81762063 0.829094038 0.817174944 0.835921067 0.833251691 0.846575779 0.867220696 0.898086306 0.875336195 0.908070968 126460278 alkk Pyrobaculum calidifontis JCM 11548 Organic Remediation Others NA superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum calidifontis; 0.845291075 0.861498668 0.857134354 0.870485703 0.834602003 0.826811313 0.879924829 0.891387675 400232184 xylg Burkholderia multivorans ATCC BAA-247 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 0.888165383 0.88091623 0.899232491 0.901572858 0.822979201 0.84004323 0.898176129 0.863131617 0.84006817 0.848394132 0.842756654 0.851946405 0.841914437 0.871707505 0.877987778 76058263 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.905807552 0.869249753 0.965452066 0.895776955 0.974362163 0.959747138 0.958055874 0.947875297 0.918765387 0.988900873 0.929871607 0.956396295 0.938542104 0.906308521 0.86836642 0.934211345 0.9098717 0.889809269 238884297 catb Selenomonas flueggei ATCC 43531 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas flueggei; 0.857938082 0.860583226 0.880157798 0.857644363 0.847266165 0.848552124 0.857792282 0.821704011 0.799882533 0.831826292 0.84973331 0.819415176 0.855916983 0.819644647 38490083 xlnd Silicibacter pomeroyi Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 1.065447258 1.055380442 1.068971452 1.037812687 0.998291915 1.008914346 0.96198211 0.978134658 1.034299017 1.021136248 1.042675347 0.990113438 1.08149879 0.988603004 0.951907294 0.994694349 1.03999464 1.014123636 293615019 urec Coraliomargarita akajimensis DSM 45221 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;order:Puniceicoccales;family:Puniceicoccaceae;genus:Coraliomargarita;species:Coraliomargarita akajimensis; 1.064297432 1.00435811 1.021986517 1.070844225 1.028381024 0.998385139 1.030760685 1.052276022 1.072685896 1.004343365 0.992262221 1.030673768 0.984182484 0.970400056 0.939469006 0.983687497 1.041887528 0.978701491 89043168 tktA Oceanicola granulosus HTCC2516 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola granulosus; 0.921724779 0.971665515 0.85599122 0.996795448 0.951768054 0.941415533 0.897371114 0.892296175 0.959445467 0.918783982 0.950416387 0.974316666 0.917601744 0.858422575 0.836405379 0.868752512 0.979520382 0.924319679 145225492 scnabc Mycobacterium gilvum PYR-GCK Organic Remediation Others NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 1.05668248 1.0717261 1.026049856 1.065379204 1.029596379 1.069274634 1.031345082 1.04879529 1.031069935 1.041618644 1.020435231 1.039874333 1.005357074 1.010681609 0.990755475 1.03537749 1.063988898 1.065614881 327545677 mer Oxalobacteraceae bacterium IMCC9480 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae; 0.847630671 0.886503797 0.844801398 0.886494593 0.856969836 0.865291021 0.858509089 0.84539631 0.838619835 0.82838465 0.863057278 0.874205885 0.836367907 0.820986658 0.837960611 0.862137716 0.850668278 0.847638156 296255413 urec Methylosinus trichosporium OB3b Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylocystaceae;genus:Methylosinus;species:Methylosinus trichosporium; 0.973292633 1.014096114 0.95976592 0.959013537 0.953698147 0.968836626 0.945991589 0.935219777 0.963812617 0.953491826 0.949075928 0.974946669 0.942880302 0.922384693 0.913012607 0.960928285 0.994797077 0.985139571 85825378 urec Roseobacter sp. MED193 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 1.19206571 1.202713523 1.154390991 1.170178328 1.174215999 1.185280051 1.156812425 1.145668145 1.164728208 1.174013845 1.177998483 1.189088386 1.138386747 1.125243264 1.134619911 1.171888537 1.171431199 1.173948128 196478323 arsc Phenylobacterium zucineum HLK1 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Phenylobacterium;species:Phenylobacterium zucineum; 1.05256567 1.022128868 1.070759425 1.078658821 1.005809896 1.076731642 1.001009447 1.050277389 1.049034977 1.032037437 1.048050353 1.027644307 0.999962508 1.035160668 1.007357339 1.023255547 1.068262343 1.073458732 226939965 urec Laribacter hongkongensis HLHK9 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Laribacter;species:Laribacter hongkongensis; 0.801010313 0.82317252 0.814000606 0.835511293 119898813 proO Azoarcus sp. BH72 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 1.094660911 1.068014639 1.052211997 1.075106157 1.038560805 1.075721854 1.053979132 1.088057134 1.084321767 1.037558528 1.046556639 1.079651066 1.005312593 1.026913563 0.993913135 1.033180864 1.088535664 1.053410494 238709575 B_lactamase_A Yersinia rohdei ATCC 43380 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia rohdei; 0.824340179 0.840281499 0.844542519 0.875223561 0.81102084 0.845142409 0.823554071 0.873102305 0.810930331 0.842880447 0.84690116 0.858132029 0.855010816 169760229 atzb Pseudomonas putida W619 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 1.280209298 1.297079377 1.290084572 1.291623576 1.292417113 1.367674345 1.271246333 1.266776395 1.275662068 1.25087302 1.229711395 1.242818785 1.269760418 1.267157877 1.279829873 1.262906283 1.289411308 1.312466086 306517205 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.014151682 1.010770349 1.002692546 0.992571386 0.935764243 0.98946789 0.912753651 0.945120015 1.008831403 0.998443951 0.955462176 0.95567614 0.921590834 0.948507876 0.970594966 0.938829226 0.99974326 1.028149224 340777834 PRI Acetobacter aceti NBRC 14818 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acetobacter;species:Acetobacter aceti; 1.044233717 1.024602816 1.041639449 1.017955656 1.041366743 1.082751555 1.034843375 1.00253663 1.012270605 1.058652356 1.023915349 1.005478897 0.996266517 1.032830978 1.02780612 0.989620678 1.038936899 1.070480953 171192961 PRI Polynucleobacter necessarius subsp. necessarius STIR1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Polynucleobacter;species:Polynucleobacter necessarius; 0.929780347 0.892477625 0.86960059 0.899989128 0.910786237 0.927053552 0.845248321 0.908318614 0.890482903 0.864380911 0.889233577 0.84825327 0.837293655 0.84042155 0.839365002 0.898893303 0.90198409 329119813 narg Neisseria bacilliformis ATCC BAA-1200 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria bacilliformis; 1.045990133 1.016968869 0.998640416 1.061030553 1.009466452 1.07847601 1.01652142 1.018796664 1.022023566 1.022488367 0.96454117 1.007550051 0.987532266 0.973812264 0.98700222 1.053168835 1.024701913 1.010512461 358449275 xylg Marinobacter manganoxydans MnI7-9 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter manganoxydans; 1.047746272 0.985842296 0.953225927 1.000281496 1.02543418 0.983579952 0.985882425 1.007411918 1.01628947 1.005760493 1.000505669 1.023332097 0.936231352 0.954297698 0.914069705 0.944694401 0.977907159 0.98207043 142054 nifh uncultured marine bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.778792343 0.805596622 157911575 FBP_aldolase Dinoroseobacter shibae DFL 12 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 0.818651698 0.915205877 0.909237879 0.847396624 0.897703319 0.864659882 0.866237968 0.876929332 0.903339172 0.866055237 0.845046545 0.860977812 0.840382788 0.899999759 0.91186844 253574730 ara Paenibacillus sp. oral taxon 786 str. D14 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus sp. oral taxon 786; 1.000136022 0.92434376 0.999647647 1.033080099 0.975840985 0.984009437 0.977275245 1.012963268 1.035855815 0.978848229 0.984915722 0.988108991 0.96382282 0.909208604 0.968492311 0.937894198 1.027035053 0.982247382 148829422 arsc Erythrobacter sp. SD-21 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter; 1.065530624 1.017009999 1.047595425 1.051076219 1.072980507 1.105142874 1.074813988 1.059860938 1.038370721 1.08312541 1.003014773 1.016370923 1.039607796 1.009460611 0.956515791 1.011376311 1.059085038 1.068417183 338821454 amyA Agrobacterium tumefaciens F2 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 0.871127401 0.837753537 0.855735962 0.860861741 0.880765748 0.888044639 0.898858009 0.864728809 0.852058636 0.840228156 0.796222494 0.818915153 91683424 FBPase Rhodopseudomonas palustris BisB5 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 0.805986423 0.818463742 0.80912843 0.82119104 0.815055217 0.829782773 0.831792235 0.799098206 0.833163484 0.809842375 0.823739362 0.845685217 0.841380865 301119087 rgl Phytophthora infestans T30-4 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;order:Peronosporales;genus:Phytophthora;species:Phytophthora infestans; 0.887187438 0.827724154 0.895624455 0.884539953 0.884087819 0.862728259 0.860358809 0.864804328 0.882210172 0.864020069 0.834616457 0.885821598 0.822654714 0.873220282 359818446 cutinase Mycobacterium rhodesiae NBB3 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 1.187657083 1.172737726 1.144418019 1.131765857 1.145310125 1.197840397 1.135092965 1.166972969 1.115571943 1.164547856 1.141887025 1.144563749 1.14838764 1.136246007 1.140381334 1.174031493 1.19437516 1.156947019 291556981 amyA Eubacterium siraeum V10Sc8a Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Eubacteriaceae;genus:Eubacterium;species:Eubacterium siraeum; 0.893948391 0.871021748 0.901377908 0.912081767 0.851453496 0.877607337 0.883912552 0.879171059 0.925347848 0.894498216 0.875928641 0.932366836 0.860859377 0.833548807 0.858530798 0.858132459 0.89372135 0.898754462 113875120 phn Sinorhizobium medicae WSM419 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 0.86158164 0.868897432 0.808717962 0.858931978 0.890637402 0.861418005 0.839755165 0.83775845 0.85169858 0.896706161 0.842692833 0.863216802 0.832519915 0.837473019 0.815612877 0.827810782 0.874442431 0.897698433 303276773 mg_chelatase Micromonas pusilla CCMP1545 Secondary metabolism Pigments Chlorophyll superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Mamiellophyceae;order:Mamiellales;genus:Micromonas;species:Micromonas pusilla; 0.810031077 0.824552858 0.852874442 0.817176556 0.801556005 0.847236112 0.805688491 0.780634766 0.817506675 0.832556143 0.790888344 62086133 bco Blastochloris sulfoviridis Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Blastochloris; 1.159378211 1.142152336 1.146847898 1.153703866 1.118927559 1.172186847 1.109334896 1.097523148 1.128369919 1.126866901 1.10947793 1.136781806 1.107612729 1.116723485 1.144450736 1.144108184 1.171169289 1.116259038 390411342 amyA Terriglobus roseus DSM 18391 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Terriglobus;species:Terriglobus roseus; 0.932198454 0.903337157 0.888829376 0.913534033 0.910027589 0.887941573 0.911607885 0.888267715 0.888065585 0.912822006 0.898601642 0.90053579 0.888825119 0.837336659 0.819171597 0.882291405 0.910593178 0.916912638 225874281 amyA Acidobacterium capsulatum ATCC 51196 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Acidobacterium;species:Acidobacterium capsulatum; 0.935394867 0.934434642 0.903044417 0.97372773 0.925018194 0.929988683 0.912217575 0.942097732 0.911019562 0.88183266 0.901739195 0.933507271 0.89922677 0.915366586 0.931915606 0.902822779 0.973718428 0.933748714 222543126 phytase uncultured bacterium Phosphorus Phytic acid hydrolysis NA superkingdom:Bacteria; 1.028475206 0.988557455 0.986838769 1.003106081 0.961231856 0.971854437 0.959253648 1.007168084 1.010355973 0.981257995 0.951811727 0.980782968 0.948471671 0.945311923 0.977412518 0.907549804 1.01448027 0.962638251 377575732 narg Mobilicoccus pelagius NBRC 104925 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dermatophilaceae;genus:Mobilicoccus;species:Mobilicoccus pelagius; 0.840069195 0.83789611 0.855164807 0.84165424 0.878206972 0.902623767 0.832304688 0.803954893 0.792454871 0.925110423 0.815659472 0.873789662 0.867283886 0.902731044 0.891402732 0.891663046 0.870971505 0.880410061 402759785 b_lactamase Acinetobacter sp. NCTC 7422 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 0.837546834 0.81448133 0.818493103 0.84177683 0.7926451 0.861053346 0.822888894 0.833572027 0.83996246 0.82674454 317018182 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.835077391 0.822063095 0.819559478 0.895771127 0.784920872 0.830542936 0.831954559 0.864624198 0.87194064 0.766270276 0.813732773 372269454 arylest Marinobacterium stanieri S30 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacterium;species:Marinobacterium stanieri; 0.935161577 0.867154022 0.8645896 0.896369761 0.824535109 0.833216 0.845648825 0.848654732 0.888458832 0.87973359 0.87698691 0.862894591 0.910931819 0.865229929 0.866552941 0.915953996 0.863702376 212537097 phospholipase_D_fungi Penicillium marneffei ATCC 18224 Carbon Cycling Carbon degradation Phospholipids superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 0.830384176 0.860541626 0.799234839 0.829058553 0.812578157 0.828503319 0.884727339 0.792370112 0.895806705 0.803552174 0.865151713 385670374 atzb Streptomyces tsukubaensis NRRL18488 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces tsukubaensis; 1.013061353 0.955456641 1.029653497 0.995146002 0.998419277 1.052725813 0.990812344 1.006207138 0.985046909 1.062197862 0.97150591 0.967127834 0.955237683 0.978877285 0.946112751 0.950557687 0.969216178 1.025031037 300659138 TIM Agrobacterium tumefaciens Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium; 1.064878919 1.069987891 0.98591307 1.022829662 0.986537064 1.020508703 0.999986426 0.952896057 1.035712436 1.034651974 0.956685478 0.990017958 0.947498286 0.978375002 0.927457471 0.987531927 1.057415254 1.066076747 153998677 mcra Candidatus Methanoregula boonei 6A8 Carbon Cycling Methane Methanogenesis superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;genus:Methanoregula;species:Methanoregula boonei; 0.786997522 0.831404186 0.841137267 0.780572668 0.783906311 0.807660553 350275738 fumarase_DiC4HB Thermoproteus tenax Kra 1 Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Thermoproteus;species:Thermoproteus tenax; 1.116815894 1.116400638 1.121663189 1.096650841 1.167525979 1.152898209 1.15922238 1.062603253 1.092381376 1.143663123 1.166317478 1.141218994 1.136164586 1.166979184 1.152479962 1.157080673 1.087835582 1.141025782 298290968 fccab Starkeya novella DSM 506 Sulfur Sulfide Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Starkeya;species:Starkeya novella; 1.067412396 1.109669491 1.036659782 1.018852606 0.992504262 0.9856431 0.964548678 1.004299697 1.003635555 0.979752809 0.975565245 0.981735629 0.988544467 0.944118159 0.946508051 0.94258229 1.048493051 0.989764766 194337338 dsrB Pelodictyon phaeoclathratiforme BU-1 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Pelodictyon;species:Pelodictyon phaeoclathratiforme; 0.88635475 0.803840915 0.910602448 0.887370768 0.864974758 0.803833337 0.874821076 0.921230568 0.861944148 0.865436071 0.847800852 0.813849523 0.85764329 0.913445475 0.854130586 339883727 terc Actinomyces sp. oral taxon 448 str. F0400 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 448; 0.828924745 0.848704168 0.845059129 0.803340527 0.81545925 0.799351677 0.842621322 0.783530642 0.819321502 0.813834533 0.834326339 0.837072156 0.872807324 373890839 RgaE Mucilaginibacter paludis DSM 18603 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Mucilaginibacter;species:Mucilaginibacter paludis; 0.988067605 0.985127904 0.861356671 0.905346073 0.919538091 0.956298766 0.93532623 0.871096492 0.965538645 0.961687414 0.85516895 0.873462768 0.980945581 0.973130819 0.840947386 0.958135319 0.95096968 0.973604908 46392670 pmoa uncultured bacterium Carbon Cycling Methane Methane oxidation superkingdom:Bacteria; 1.105712325 1.091424225 1.076315451 1.121923493 1.071705118 1.098066131 1.070437865 1.126780264 1.09449452 1.058777065 1.066598695 1.104892656 1.065965766 1.074901863 1.119105085 1.069537199 1.113967091 1.09420443 167574798 endoglucanase Burkholderia oklahomensis C6786 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia oklahomensis; 0.94981867 1.013240855 0.94118487 0.963226016 1.001120197 1.001506707 0.974461738 0.973702938 0.986290188 0.994746333 0.979821867 0.986477333 0.962466584 0.964908823 0.99077843 0.975862101 0.97518718 1.006101704 225791775 ara Acidobacterium capsulatum ATCC 51196 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteria;order:Acidobacteriales;family:Acidobacteriaceae;genus:Acidobacterium;species:Acidobacterium capsulatum; 0.847723749 0.857226425 0.860948848 0.869330524 0.888979802 0.89601662 0.902476067 0.89087611 0.860300414 0.859307001 0.836927485 0.853763325 0.843790878 0.790145781 0.837948743 0.866341894 0.896885814 335359239 nifh Thermodesulfatator indicus DSM 15286 Nitrogen Nitrogen fixation NA superkingdom:Bacteria;phylum:Thermodesulfobacteria;class:Thermodesulfobacteria;order:Thermodesulfobacteriales;family:Thermodesulfobacteriaceae;genus:Thermodesulfatator;species:Thermodesulfatator indicus; 0.807471799 0.811371559 0.858425638 0.867187866 0.885154117 0.832530761 0.842132339 0.876331515 0.830982539 0.854553809 0.837890913 0.858328924 0.8530678 0.787768429 0.830977335 402258484 proO Sphingomonas sp. LH128 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 1.118312117 0.837787567 4512252 mnp Pleurotus ostreatus Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Pleurotaceae;genus:Pleurotus; 0.946225563 0.881104475 0.918754912 0.932375233 0.885095675 0.935808 0.916781045 0.891427591 0.918139874 0.916875623 0.898695437 0.897538272 0.881939607 0.919616057 0.865981187 0.891911329 0.939795205 0.920511852 345872300 pgk Thiorhodococcus drewsii AZ1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiorhodococcus;species:Thiorhodococcus drewsii; 0.876524084 0.818865582 224017473 arsc Bacteroides coprophilus DSM 18228 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides coprophilus; 0.832547411 0.824622391 0.799125722 0.857881321 336296520 chitinase Paenibacillus mucilaginosus KNP414 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 0.798786152 0.821894262 145556223 exaa(moxf) Rhodobacter sphaeroides ATCC 17025 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 1.000409649 0.970834653 0.995628998 1.052390195 0.990651109 1.025467905 1.048198892 1.030269376 1.020556982 0.964594168 0.994539806 1.035588279 0.966111349 0.975722161 0.957577079 1.005601835 1.041510475 0.956800892 9658291 amyA Vibrio cholerae O1 biovar eltor str. N16961 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio cholerae; 1.054981248 0.989835015 1.0063933 1.058153019 0.961319268 0.995379826 1.02770993 1.03159768 1.037036061 1.005144512 0.985985257 1.020950142 0.98006384 0.977846701 0.963668662 1.001951193 1.028462294 1.010831742 377820591 tktA Burkholderia sp. YI23 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 0.826337603 0.831915889 0.831038903 0.837073415 0.894017624 0.844707469 0.840390007 0.819171035 0.835130301 0.861489843 0.869183383 0.886198737 0.800579312 0.825538128 0.795527107 0.791604381 0.848111692 0.878272431 2935031 catb Rhodococcus opacus Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 1.04859369 1.028340812 0.996999466 1.018431764 1.027734502 0.996481104 0.958057199 0.956292532 1.010391476 0.994781234 0.965621455 0.999225884 0.979275047 0.942782963 0.940063148 0.9427135 1.051816947 1.03794603 91703634 arsc Mycobacterium sp. MCS Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 1.240284357 1.250117047 1.240213963 1.196725967 1.231352013 1.2799788 1.23038265 1.237343459 1.201012591 1.203202997 1.218860427 1.200811624 1.221071983 1.194092847 1.186612458 1.193943113 1.245190999 1.232460639 2826168 nagg Pseudomonas putida Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.875726587 0.834270167 0.857343924 0.899098138 0.827443585 0.808469022 0.8394621 0.872742099 0.880889036 0.891903453 0.822425555 0.863361795 0.894782381 0.89602124 330828578 Sir Aeromonas veronii B565 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas veronii; 0.895344198 0.882948704 0.885229266 0.820833924 0.881001931 0.849164768 0.833702305 0.856668931 0.854841919 0.825489203 0.88097222 0.836656607 0.904388179 0.919775987 116743200 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.97276236 1.029057208 0.962034173 1.053680353 1.016267945 1.04398156 0.975009976 0.979177888 1.026586661 1.032214496 0.98114153 0.978184359 1.012449793 1.043116299 0.940750482 0.997519978 1.019965237 1.032334381 315659481 ppk Staphylococcus lugdunensis M23590 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Staphylococcus;species:Staphylococcus lugdunensis; 0.94116486 0.901045672 0.944632139 0.97346024 0.933940228 0.930260603 0.880228635 0.905418614 0.948903909 0.858455916 0.890413838 0.927038525 0.921581265 0.832722642 0.845681406 0.897233656 0.950209097 0.933038022 407804543 xylj Alcanivorax sp. W11-5 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax;species:Alcanivorax pacificus; 0.861193542 0.876321871 0.847323681 0.799442485 0.818469203 0.804647008 0.798123369 0.803151947 0.826857165 0.841125155 0.848979391 0.852255651 260223593 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.976298461 0.897431388 0.911126927 0.965987905 0.929733013 0.978466624 0.956988564 0.958360697 0.886979546 0.934016175 0.947831759 0.948512399 0.957347235 218892208 cysI Pseudomonas aeruginosa LESB58 Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 0.75713583 0.805160816 0.828134184 0.791971263 0.792398512 0.80202625 0.830129227 0.74222065 0.814058072 295647331 phytase uncultured microorganism Phosphorus Phytic acid hydrolysis NA 1.035155293 1.048477204 1.048101395 1.046234934 1.027959001 1.054253969 1.036809612 1.050527149 1.025398594 1.046859717 1.055697653 1.051998773 0.996042875 0.9932796 0.973254166 0.982885014 1.032165348 1.083955105 25900718 fthfs uncultured bacterium Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria; 0.803007731 0.837160411 0.81088799 0.882867217 0.816837785 0.865875379 407276442 chnb Rhodococcus sp. P14 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 0.841043459 0.855958649 0.802453729 0.859906573 0.809678032 0.844679874 0.795424596 0.893991228 359400790 phdci Novosphingobium pentaromativorans US6-1 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium pentaromativorans; 0.800013443 0.82021755 0.822203109 0.85012092 0.816471868 0.843404222 0.82325709 0.822240103 0.803318045 0.815028853 359424438 narg Gordonia amarae NBRC 15530 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia amarae; 0.753116382 0.944136027 0.78091067 0.790572346 0.805421139 0.784058095 0.79100047 0.82930488 0.93484255 0.805152003 0.798160182 0.859400198 254041090 arsc Hirschia baltica ATCC 49814 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Hirschia;species:Hirschia baltica; 0.91128718 0.801695697 0.825436798 0.864445226 0.889835814 0.86645829 0.821418168 223982792 amyA Holdemania filiformis DSM 12042 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Erysipelotrichia;order:Erysipelotrichales;family:Erysipelotrichaceae;genus:Holdemania;species:Holdemania filiformis; 1.186754074 1.187454527 1.165564655 1.202231531 1.14773725 1.190291162 1.153685757 1.144503096 1.160340188 1.166510807 1.173499996 1.200488592 1.157465598 1.171284525 1.139365511 1.163850102 1.188785521 1.160102653 109648488 bphF1 Desulfitobacterium hafniense DCB-2 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 0.840740082 0.850929597 0.825458409 0.888655621 0.880227345 0.845623383 0.868610082 0.843755781 0.864030792 0.88089158 0.882117851 0.843600001 0.832312563 0.843787119 0.885473033 377532780 amyA Gordonia terrae NBRC 100016 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia terrae; 1.003172771 1.003785771 0.91744849 0.979573398 0.88197935 0.972768418 0.868858903 0.900248406 0.945275365 0.948018907 0.914213687 0.904618419 0.896460532 0.928921206 0.850321852 0.901593085 0.979173043 1.018475848 186470462 cysJ Burkholderia phymatum STM815 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 0.903831102 0.966031009 0.919485661 0.929477956 0.922039371 0.914082695 0.895336659 0.875840943 0.854175131 0.882281984 0.892211708 0.91378228 0.902644762 0.901240842 0.874080691 0.902359276 0.912526978 0.950510879 116804546 nasa uncultured prokaryote Nitrogen Assimilatory N reduction NA 0.933857144 0.934043164 0.942744796 0.979882238 0.930145455 0.969523132 0.964344724 0.937834652 0.921256137 0.946856898 0.922038126 0.956163909 0.884041768 0.85921051 0.859784581 0.877871191 0.945679678 0.958545171 363407673 amyA Tannerella forsythia ATCC 43037 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Tannerella;species:Tannerella forsythia; 0.948779982 0.989951434 0.888860269 0.965852943 0.929504467 0.976366177 0.886398573 0.929369237 0.943302002 0.936616068 0.88436791 0.935355957 0.949695296 0.945764391 0.908399962 0.90037392 0.959107157 1.005355905 381397747 terc Microbacterium laevaniformans OR221 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Microbacterium;species:Microbacterium laevaniformans; 1.133683739 1.089717758 1.156559074 1.16657464 1.147398917 1.148381391 1.168119224 1.153675316 1.114207538 1.112746769 1.142952055 1.144133067 1.075027971 1.082003802 1.108232758 1.084109191 1.213568691 1.09961018 385179133 limeh Burkholderia sp. Ch1-1 Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 0.975158293 0.883890737 0.926844231 0.963151578 0.915426068 0.946535162 0.940146113 0.918583078 0.955630122 0.92544964 0.923385953 0.932312487 0.940131137 0.872339831 0.845703811 0.887583057 0.961486251 0.914340389 325168807 tktA Agrobacterium sp. H13-3 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium; 0.973781696 0.929400381 0.95877245 0.99569198 0.941839437 0.947475425 0.987272255 0.978109554 0.985628688 0.984817286 0.974243355 0.991894264 0.920477146 0.889094911 0.934944615 0.895666294 1.028149152 0.978145633 115519091 exaa(moxf) Rhodopseudomonas palustris BisA53 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 0.858841554 0.880967288 0.814150633 0.885454003 0.850922204 0.790162613 0.888155933 0.861868042 0.858864576 0.80685297 0.876025673 0.818294651 0.805774367 0.838912626 0.89237092 222138075 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.78058932 0.808895914 0.829796705 0.763478501 0.813388473 0.79456527 0.756097987 0.830837464 116743267 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.989330097 0.963417327 0.954947399 0.968430536 0.950090039 0.948935569 0.90350947 0.949761956 0.954164621 0.921608467 0.893261565 0.903611134 0.931135932 0.866645632 0.900390575 0.895972849 0.95887796 0.970919831 73698632 cellobiase Alicyclobacillus acidocaldarius Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Alicyclobacillus; 0.84849506 0.876724832 0.878671716 0.804756974 0.812520396 0.879836623 0.825288386 0.786735925 0.813844015 0.855796724 0.897223351 373850727 rgl Opitutaceae bacterium TAV5 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 1.062244289 1.039592515 1.026577205 1.066822306 1.048210394 1.091786472 1.045100268 1.057507038 1.05053198 1.064522662 1.017309927 1.048100701 1.043103119 1.049359338 1.034977055 1.062000625 1.079924779 1.04823998 296139486 terc Tsukamurella paurometabola DSM 20162 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Tsukamurellaceae;genus:Tsukamurella;species:Tsukamurella paurometabola; 0.945446461 0.943863543 0.972660334 0.933983829 0.937470167 0.971092351 0.899642916 0.908899946 0.944261138 0.919919884 0.910599908 0.968752249 0.880673884 0.866864082 0.84295663 0.880074274 0.947243071 0.960222508 381379908 ppk Rubrivivax gelatinosus IL144 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Rubrivivax;species:Rubrivivax gelatinosus; 1.134334974 1.11418087 1.078816232 1.07544009 1.084647445 1.103137458 1.062160131 1.072710128 1.101446125 1.105739573 1.103113154 1.104099152 1.083606155 1.077239296 1.054043366 1.069507222 1.118093224 1.127026388 383821536 amyA Mycobacterium phlei RIVM601174 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium phlei; 1.239333845 1.240220875 1.196810808 1.175204821 1.158931129 1.23259088 1.140874593 1.141733646 1.115998291 1.180122504 1.15377489 1.153417932 1.15750428 1.163327723 1.153939685 1.170573977 1.200810035 1.202280552 219852472 dsra Candidatus Methanosphaerula palustris E1-9c Sulfur sulfite reduction NA superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;genus:Methanosphaerula;species:Methanosphaerula palustris; 0.842295367 0.918568941 0.862722005 0.893997799 0.922325956 0.893979053 0.860496148 0.89160543 0.837715024 0.924546921 0.850200102 0.897137056 0.874889867 0.857796094 0.858955072 0.836619818 0.905678775 345633048 mer Streptomyces zinciresistens K42 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces zinciresistens; 1.174122696 1.142733997 1.147012831 1.149800127 1.157717019 1.132541097 1.129711253 1.154872963 1.146953798 1.143363996 1.134656825 1.139165252 1.130709577 1.099356272 1.110810084 1.113465832 1.175853722 1.154321082 145575973 alkb Pseudomonas mendocina ymp Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas mendocina; 0.837324428 0.812558643 0.800688611 0.852452212 0.875939847 0.826584716 334887626 pcag Salinisphaera shabanensis E1L3A Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Salinisphaerales;family:Salinisphaeraceae;genus:Salinisphaera;species:Salinisphaera shabanensis; 0.939315847 1.008673137 0.929226881 0.988339202 0.950640805 0.965111924 0.894049333 0.872493985 0.895132723 0.895831253 0.884874004 0.907473328 0.947630916 0.874342797 0.853791147 0.91228871 0.924933255 1.000184475 45386161 narg unidentified bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.305173963 1.255205713 1.259513405 1.300409338 1.239587962 1.269485521 1.237998875 1.260762783 1.2788464 1.257331544 1.260342427 1.276962828 1.246713587 1.237603774 1.232826313 1.238742144 1.286863518 1.230878498 317508584 amyA Segniliparus rugosus ATCC BAA-974 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Segniliparaceae;genus:Segniliparus;species:Segniliparus rugosus; 0.973900657 0.989333701 0.936148097 0.991507963 0.988873358 0.957418072 0.918854402 0.981145751 0.973511089 0.923887404 0.898945173 0.94154061 0.914929578 0.914392063 0.924628383 0.878238418 0.970397809 1.029293794 116610594 pcpe Arthrobacter sp. FB24 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 0.796105831 0.854571624 0.811449926 0.90529606 53756342 nifh Methylococcus capsulatus str. Bath Nitrogen Nitrogen fixation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylococcus;species:Methylococcus capsulatus; 0.851519456 0.880587069 0.903347399 0.869023993 0.877600228 0.894670681 0.905801882 0.869303295 0.863065047 0.886215988 0.884252206 0.842819914 0.833166097 0.849424717 0.868806013 0.857271023 164456140 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 0.842674846 0.796633829 0.827685994 0.898230762 0.813143145 0.788666714 0.877004626 0.873279 0.843887837 0.84906704 91687557 cysJ Burkholderia xenovorans LB400 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 0.787979657 0.824416975 2911478 amyA Paenibacillus macerans Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 0.941288825 0.912118038 0.874265321 1.009168532 0.86559214 0.922219893 0.901551089 0.912837077 0.94544817 0.943695782 0.858887178 0.912754614 0.905835199 0.888984988 0.866996551 0.877580173 0.952672825 0.896484867 164455616 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 0.895561741 0.831936527 0.86601625 0.889477727 0.884445885 0.824052243 0.888925434 0.90907129 0.901732538 0.852080484 0.857906541 0.901609553 0.877299848 0.80871859 0.846445454 0.807420341 0.874713848 0.886107817 374324792 mannanase Paenibacillus terrae HPL-003 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus terrae; 0.880006943 0.885529719 0.908013304 0.899142782 0.949858224 0.920504002 0.885170862 0.886429632 0.862796815 0.922630692 0.901585959 0.900384435 0.874250662 0.852092158 0.847460478 0.826963616 0.893260859 0.920156335 291544870 RgaE Ruminococcus sp. 18P13 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus;species:Ruminococcus champanellensis; 0.825579718 0.851125145 0.934883032 0.889967484 0.892911517 0.867418568 0.857102843 0.87671265 0.882175548 0.877871725 0.878774943 0.87157579 0.848142764 0.83059998 0.80216734 0.832277234 0.88523484 80975793 alkb Nocardia sp. H17-1 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia; 0.951298698 0.954109518 0.976637414 1.010063136 0.996529996 0.980181726 0.978914245 0.981432424 0.972326597 1.044235974 1.011658225 1.047410317 0.981807058 0.994088082 1.034962664 0.962181805 0.961513201 0.964710152 217330181 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.053560472 1.030411728 1.074391166 1.056338502 1.025525054 1.043837156 1.031869119 1.062771747 1.047035446 1.002531903 1.038639293 1.036932059 1.024169437 0.967576258 0.978036266 0.957375174 1.041981578 1.016290087 260650933 pme Streptomyces scabiei 87.22 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces scabiei; 1.012835417 0.952244708 1.012093769 0.987134674 0.995452933 0.990769619 0.99078838 1.175930964 1.023942411 0.96595437 0.938109986 0.992388722 0.945776383 0.903545179 0.905432366 0.922915236 0.988422389 1.011830444 228015257 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.091306125 1.051237969 1.056721928 1.068492707 1.092876053 1.08864861 1.08410988 1.061814394 1.042443866 1.076063211 1.026952917 1.057548741 1.019011019 1.029591334 1.005612325 1.004567809 1.058544613 1.090419844 89087213 amyA Bacillus sp. NRRL B-14911 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 0.872204676 0.829192924 0.876140071 0.917416969 0.833585231 0.931225436 0.819910912 0.841196793 0.878633782 0.873487356 0.863872831 0.86472908 0.855627795 0.850954477 0.901268418 0.890068475 78521708 nosz Alkalilimnicola ehrlichei MLHE-1 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Alkalilimnicola;species:Alkalilimnicola ehrlichii; 0.799874117 0.787495591 323139061 FBPase Methylocystis sp. ATCC 49242 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylocystaceae;genus:Methylocystis; 1.028388965 1.079291768 1.050358109 1.057576675 1.061952666 1.054136451 1.04032164 1.005067075 0.990566815 1.045454136 1.027355018 1.03497584 1.040187076 1.001110442 1.011709709 1.035596876 1.026942224 1.043979992 386856890 amyA Deinococcus gobiensis I-0 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus gobiensis; 1.164341305 1.212362194 1.17260208 1.150811548 1.177011126 1.221944665 1.147162422 1.129625606 1.140952529 1.205852198 1.183019313 1.155665141 1.161719277 1.208784119 1.167280932 1.174493866 1.17157306 1.186081763 145302229 cellobiase Salinispora tropica CNB-440 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora tropica; 0.813339778 0.797424146 0.850280892 0.823448023 0.859697852 0.849509239 375143592 tfdb Niastella koreensis GR20-10 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;genus:Niastella;species:Niastella koreensis; 0.98674042 0.953802067 0.971518966 0.960633953 0.927887214 0.956700728 0.927991572 0.967990281 0.969484896 0.97332987 0.923137754 0.935105098 0.885351352 0.950349104 0.845215977 0.918267316 0.97113287 1.00213276 374326666 PEP_synthase Pyrobaculum sp. 1860 Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum; 1.046165801 1.028830401 1.057461296 0.99169991 1.014705778 0.951822855 0.996714283 0.977604656 1.016304092 1.048677142 1.02597951 0.990857036 1.011104666 1.018062486 0.981139627 0.958973134 1.026268417 1.076120823 111150767 camdcab Frankia alni ACN14a Carbon Cycling Carbon degradation Camphor superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia;species:Frankia alni; 1.464387856 1.364960856 1.391543214 1.449285438 1.375322911 1.440805584 1.400364767 1.422902161 1.398477927 1.358518758 1.386854555 1.383632901 1.356198367 1.331948788 1.346798828 1.390749908 1.411295387 1.351137882 63029764 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.94900775 0.96333492 0.948157334 1.042076482 0.993806117 1.032480471 0.985996227 0.976292015 0.988462434 0.988675879 0.955336732 1.014796389 0.932590573 0.905242684 0.836231584 0.942417174 0.96176413 0.948587178 162568509 aoxb Pseudomonas sp. 1 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.960916568 0.95875165 0.966870004 0.987881317 0.967879623 0.953871059 0.92967879 0.971367913 0.991692071 0.975897056 0.95229355 0.980906219 0.952954045 0.960758551 0.977744369 0.923463873 1.018008168 1.015294087 27349176 tfth Bradyrhizobium japonicum USDA 110 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 0.945128265 0.932818953 0.883477246 0.927127673 0.831203564 0.886516006 0.859415923 0.886822893 0.925067551 0.888709142 0.843871152 0.88448416 0.833836189 0.864472237 0.828061263 0.878900915 0.923393402 0.934848066 89347083 dehh109 Rhodoferax ferrireducens DSM 15236 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Albidiferax;species:Albidiferax ferrireducens; 0.815565261 0.803326965 0.803764833 0.878766537 121712204 exoglucanase Aspergillus clavatus NRRL 1 Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 0.985390438 0.936120991 0.907671438 0.925949952 0.90987497 0.9338764 0.90989407 0.949944812 0.925337099 0.921648347 0.905690262 0.934741461 0.849376961 0.912892208 0.875895233 0.93099016 0.972119868 332377154 fthfs uncultured bacterium Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria; 0.980839034 0.924627533 0.977700885 1.015837 0.960750921 0.91645936 0.975271718 0.985625515 1.006125043 0.93170366 0.928679739 0.977976174 0.932886095 0.854109088 0.901734025 0.920050143 0.997004865 0.906067337 189198385 phospholipase_A2_fungi Pyrenophora tritici-repentis Pt-1C-BFP Carbon Cycling Carbon degradation Phospholipids superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 0.877305009 0.808852279 0.816605432 0.860306643 0.814517337 0.817830733 0.84065071 0.840939841 0.84002288 0.808061335 0.846323125 0.876900964 0.837172219 153012124 tktA Ochrobactrum anthropi ATCC 49188 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum anthropi; 0.807712582 0.814796753 0.856507274 0.822462724 0.844679188 0.830968752 0.803890745 0.849296941 0.813903862 0.847669874 0.818886575 302675262 xylanase Schizophyllum commune H4-8 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 0.994534401 0.930489578 0.816697406 0.803184502 0.844554304 0.81158207 0.838902499 0.825236631 0.875878633 0.884327607 0.900001187 0.809579413 0.898647609 0.93391407 0.889012762 383774473 mdla Bradyrhizobium sp. S23321 Organic Remediation Aromatics Aromatic alpha hydroxy acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.796968549 0.826778997 0.780414394 0.888488352 23492715 arsc Corynebacterium efficiens YS-314 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium efficiens; 1.144270879 1.169010104 1.143616551 1.151126339 1.111669644 1.148324844 1.123799452 1.112871959 1.106383517 1.117148659 1.1142116 1.127540033 1.079125365 1.096312081 1.067719291 1.079315585 1.145519207 1.140629115 260652184 amyA Streptomyces scabiei 87.22 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces scabiei; 1.169283222 1.07398294 1.160977675 1.122812273 1.097165425 1.067747334 0.971037325 1.059013006 1.119650577 1.10129965 1.118545742 1.086549746 1.092006258 1.086066759 1.019902892 1.065969635 1.155977034 1.117204113 116619464 ccmL Candidatus Solibacter usitatus Ellin6076 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 1.034131699 1.048753944 1.027028768 1.077299032 1.024542924 1.076504947 0.987867035 1.040113289 1.064844221 1.059914119 0.985387465 1.060390965 1.01584306 0.99274264 1.000766879 1.021594789 1.0761152 1.043618119 85709358 ppx Erythrobacter sp. NAP1 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter; 0.916688855 0.887707384 0.949785707 0.887935537 0.903710648 0.963990885 0.839999479 0.875697915 0.915811244 0.925630374 0.877325869 0.880776336 0.783377757 0.83674039 0.781504824 0.935393613 0.899982961 0.890047564 300309645 tktA Herbaspirillum seropedicae SmR1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herbaspirillum;species:Herbaspirillum seropedicae; 0.798904813 0.840496588 0.800795391 0.909976999 0.801105052 0.824599827 0.817917667 288960200 tktA Azospirillum sp. B510 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum lipoferum; 1.16274141 1.128503999 1.100677511 1.143029567 1.070184573 1.135770339 1.076339721 1.103933831 1.12449493 1.096065808 1.098327264 1.113911845 1.06467021 1.106016366 1.02126058 1.071404313 1.14616205 1.104682133 199594029 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.844280441 0.810517016 0.860881134 0.894922034 0.856794011 0.843509975 0.890539622 0.874428005 0.845526513 0.882754391 0.862190872 0.88046132 0.827586978 0.815955257 0.81772944 0.837031198 0.886843856 0.876368504 352682225 alkk Thermoproteus tenax Kra 1 Organic Remediation Others NA superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Thermoproteus;species:Thermoproteus tenax; 1.246832408 1.211471194 1.144776915 1.192111453 1.144984935 1.21249312 1.141677175 1.17240501 1.185011297 1.174238366 1.149927238 1.165975769 1.147226964 1.155965997 1.128440326 1.189523364 1.209660949 1.208118573 354724639 ppx Enterobacter mori LMG 25706 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter mori; 1.118979331 1.112675468 1.10195819 1.099220818 1.111528663 1.141643461 1.127370597 1.109985521 1.069217624 1.078755966 1.095928111 1.074384751 1.082259647 1.067813152 1.018901954 1.100617691 1.09412185 1.134849602 50542706 rubisco uncultured bacterium Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria; 0.979596912 0.955397861 0.970571065 0.902549324 0.993297957 1.061974833 1.015242427 0.921310001 0.944736208 1.069182558 1.097686676 0.976891484 1.060090506 1.041302741 1.083587803 1.038992254 1.052136307 1.039332494 13195098 dsrB Desulfotomaculum acetoxidans Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum; 0.938576902 0.887621395 0.877232533 0.949377346 0.86496696 0.831167831 0.908469955 0.896538369 0.987810002 0.899929826 0.903546471 0.961074235 0.825387704 0.835939252 0.88167514 0.899636577 0.882441423 13249537 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.846564212 0.831294661 0.900387441 0.901051939 0.822469381 0.830739414 0.882202248 0.8097175 0.827511912 0.831326653 0.878985419 0.816177534 115257183 xylanase Rhizobium leguminosarum bv. viciae 3841 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 1.203406841 1.198131307 1.165009124 1.160404925 1.184594516 1.186273442 1.17485719 1.155040275 1.155757481 1.167696305 1.242988709 1.189984146 1.157940471 1.149907058 1.188469683 1.164396208 1.214868114 1.16863729 216824 nifh Leptolyngbya boryana Nitrogen Nitrogen fixation NA superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Leptolyngbya; 0.999322615 1.036066709 0.985486046 0.989404064 1.070734031 1.060317537 1.054158976 1.00652304 1.017039071 1.050017723 1.077892207 1.040060999 1.058370728 1.048449262 1.052215897 1.024367823 0.98104698 1.018775528 392402274 amyA Turneriella parva DSM 21527 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Leptospiraceae;genus:Turneriella;species:Turneriella parva; 0.985739647 1.026883587 1.022247497 1.008314684 0.985471215 1.023802523 0.950983664 0.98639793 0.968216574 1.013902121 0.983799755 0.962541932 0.983623911 0.965445871 0.938158086 0.969166389 0.986939304 0.959255759 94471125 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.98223706 0.920565344 0.933187951 0.964240017 0.946314722 0.965154081 0.962552066 0.981557377 0.964639529 0.945338591 0.946005405 0.955427244 0.920264568 0.862869089 0.864542428 0.899166412 0.96502837 299123728 amyA Halalkalicoccus jeotgali B3 Carbon Cycling Carbon degradation Starch superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halalkalicoccus;species:Halalkalicoccus jeotgali; 0.862380687 0.861591408 0.834010673 0.828765454 0.787142953 0.833951894 0.816795353 0.833644779 0.809145421 0.850187655 0.814639016 383830329 acetylglucosaminidase Saccharomonospora xinjiangensis XJ-54 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora xinjiangensis; 1.27416285 1.253083854 1.209328803 1.258118418 1.196257413 1.231789276 1.215459653 1.251672841 1.212871963 1.233105373 1.18329258 1.244555082 1.208094276 1.174128728 1.167901653 1.192993997 1.258196602 1.257753776 365896511 b_lactamase Bradyrhizobium sp. STM 3843 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 1.002414471 0.985887154 0.918719516 0.957244992 0.944562999 0.949800829 0.936250652 0.92539895 0.996068662 0.948037323 0.933016688 0.942695059 0.941156329 0.953438831 0.919767882 0.938784902 0.993851225 0.919714988 118424479 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.128447883 1.065389473 1.061428878 1.107548119 1.042513375 1.086938366 1.050456827 1.10124998 1.090413806 1.082765071 1.055411429 1.089249951 1.044067719 1.042622821 1.066150532 1.056756118 1.101362021 1.062022674 371586737 phn Rahnella aquatilis CIP 78.65 = ATCC 33071 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Rahnella;species:Rahnella aquatilis; 0.90220952 0.891317087 0.864258519 0.938490606 0.894790118 0.866152527 0.91981595 0.886740482 0.949582376 0.896309885 0.892834794 0.938083806 0.901583257 0.833907923 0.809624603 0.876662067 0.920654876 0.925065297 350275800 PEPC Thermoproteus tenax Kra 1 Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Thermoproteus;species:Thermoproteus tenax; 0.906530973 0.838117106 0.798258437 0.820396646 0.864255348 0.842831744 0.827211126 0.801037659 0.809182206 0.878107037 0.817377368 0.766477954 0.79560623 0.816299243 0.772615223 0.856185312 319742946 tehb Lautropia mirabilis ATCC 51599 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Lautropia;species:Lautropia mirabilis; 1.050910265 1.112104003 0.941374069 1.039272931 1.028520043 1.060905847 0.973751675 0.99816145 1.018809886 1.051293593 0.964921886 1.024105959 1.006736748 1.01359275 0.922897428 0.999655751 1.059286304 1.094381928 134102989 endochitinase Saccharopolyspora erythraea NRRL 2338 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 0.794119381 0.862992608 0.825932205 0.870562046 209960629 sqr Rhodospirillum centenum SW Sulfur Sulfide Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum centenum; 1.212803974 1.224127032 1.18721826 1.221742936 1.148937517 1.239132091 1.167555737 1.193028121 1.193279996 1.208249946 1.154672552 1.1739506 1.163469206 1.202443754 1.130713662 1.188517836 1.206655686 1.228814962 354616263 terc Saccharomonospora paurometabolica YIM 90007 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora paurometabolica; 1.12346172 1.11783082 1.11046958 1.108792217 1.070335763 1.07577441 1.076201258 1.084501377 1.128043552 1.087429471 1.073154956 1.105878361 1.055336785 1.026901528 1.018743162 1.03450354 1.093057727 1.063434512 311312461 bphc Aeromicrobium marinum DSM 15272 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Aeromicrobium;species:Aeromicrobium marinum; 1.152881648 1.136660507 1.149934719 1.161763646 1.174374643 1.157473176 1.164940284 1.169988359 1.168929038 1.145872116 1.140009251 1.157744756 1.147574523 1.117323704 1.120735252 1.101337949 1.133491807 1.114892407 365844112 amyA Flavonifractor plautii ATCC 29863 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;species:Flavonifractor plautii; 0.782903533 0.825270235 0.782482891 0.785191988 0.781229964 375147070 amyA Niastella koreensis GR20-10 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;genus:Niastella;species:Niastella koreensis; 1.036777164 0.939999679 0.982431251 1.07105884 0.981480168 0.972073431 0.973053531 1.036067507 1.053436631 0.931253497 0.959255841 1.002792562 0.942062483 0.910355995 0.902626281 0.933671308 1.024951505 0.954459404 238598280 Dyp Moniliophthora perniciosa FA553 Organic Remediation halogenated compounds NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Marasmiaceae;genus:Moniliophthora;species:Moniliophthora perniciosa; 0.825098971 0.810510717 0.850292306 0.840280594 0.832458429 0.822734563 0.795356656 0.919117422 0.822586752 0.844126795 0.875352091 355361862 badh Desulfotomaculum gibsoniae DSM 7213 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum gibsoniae; 0.959228478 0.948613835 0.956866772 0.985755417 0.875810968 0.953934711 0.930261996 0.959493054 0.960792064 0.957337329 0.920307924 0.964414118 0.876286833 0.923986521 0.905705697 0.890402231 1.022132655 0.959537162 40888721 protease_serine_fungi Beauveria brongniartii Carbon Cycling Carbon degradation protein superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Cordycipitaceae;genus:Cordyceps;species:Cordyceps brongniartii; 0.767497347 0.790324475 0.82986626 0.780388314 0.813008481 260427193 GAPDH_Calvin Citreicella sp. SE45 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Citreicella; 1.132699098 1.097540412 1.120874546 1.105799718 1.222379011 1.105786231 1.065256686 1.091928065 1.125124989 1.079845889 1.098783986 1.093312725 1.07295605 1.037978383 1.037436207 1.060184114 1.115202512 1.075406203 211905377 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.782434883 0.812517783 49530588 one_ring_12diox Acinetobacter sp. ADP1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 1.120191855 1.087885858 1.10734655 1.113806108 1.082871567 1.097665289 1.077854385 1.126200356 1.109261245 1.108920153 1.073693307 1.108281031 1.066414114 1.06898036 1.034901544 1.079080214 1.087793037 1.082659135 345302150 amyA Rhodothermus marinus SG0.5JP17-172 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;order:Bacteroidetes Order II. Incertae sedis;family:Rhodothermaceae;genus:Rhodothermus;species:Rhodothermus marinus; 0.982885652 1.036782598 1.010143468 0.977593922 1.042634142 1.004426938 0.995496824 0.975102282 0.984483782 0.965698451 1.026018403 1.005459039 0.921651025 0.877835951 0.869197106 0.941338251 0.919888476 0.959426654 386721003 bphF1 Paenibacillus mucilaginosus K02 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 1.011586054 0.998654859 0.885914495 0.973700761 0.880886496 0.96800163 0.918709064 0.948403854 0.98723548 0.948968378 0.877955869 0.930390444 0.852094143 0.88624898 0.806983113 0.917808235 0.988586645 1.017302581 37925029 nifh uncultured nitrogen-fixing bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.936478346 0.916951478 0.894956873 0.916342608 0.899629644 0.885804112 0.951314509 0.899850441 0.926259577 0.92162519 0.896805774 0.932980768 0.871613832 0.877381036 0.855579877 0.896838767 0.924400084 0.893736772 116255378 linc Rhizobium leguminosarum bv. viciae 3841 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 0.977595966 0.966784727 0.993058073 1.001608447 1.000276692 0.984130746 0.921052787 0.994819581 1.014343575 0.966443862 0.974153466 1.004263969 0.941083745 0.966678852 0.889759468 0.957789535 0.992648752 0.986671349 169847738 badh Coprinopsis cinerea okayama7#130 Organic Remediation Aromatics Other aromatics superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 0.912457257 0.992722019 0.919904334 0.960560954 0.886602541 0.947957588 0.918032343 0.923723611 0.96779788 0.962202947 0.886552137 0.945256819 0.876209811 0.908914461 0.840602684 0.920768499 0.98498786 0.992409628 209967302 PRK Rhodospirillum centenum SW Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum centenum; 0.919610399 0.831116905 0.891508063 0.900507288 0.861579602 221727407 ara Agrobacterium radiobacter K84 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 1.165124846 1.133187391 1.079680345 1.117418255 1.118017382 1.123532224 1.135027054 1.14487059 1.122642432 1.099176322 1.125289066 1.107623058 1.087178055 1.037191275 1.066258541 1.03681798 1.114082467 1.10314373 218759920 codh Desulfatibacillum alkenivorans AK-01 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfatibacillum;species:Desulfatibacillum alkenivorans; 0.909972219 0.878614851 253826201 one_ring_23diox uncultured bacterium L11E10 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria; 1.048026594 1.059080588 1.076676615 1.080759125 1.063126568 1.07530648 1.095024871 1.026077841 1.057090605 1.085433932 1.10896562 1.092703565 1.047325891 1.024453273 0.966883009 1.015728171 1.0420478 1.017307065 331695171 merb Pseudonocardia dioxanivorans CB1190 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Pseudonocardia;species:Pseudonocardia dioxanivorans; 0.82418223 0.898075133 0.852298343 0.902437829 0.861199849 0.884593644 0.872316105 0.853312477 0.847919477 0.918198541 0.88195844 0.836414721 0.858765189 0.826846634 0.870808697 0.884545887 110337616 ppx Acidovorax sp. JS42 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 0.946399372 0.887052085 0.965451485 0.946123021 0.985768468 0.957073133 0.964264136 0.972295837 0.982267074 0.946152196 0.953677656 0.957729232 0.964671335 0.925223539 0.900725497 0.919400062 0.954977969 0.958069481 77539313 mhqa Burkholderia sp. NF100 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 1.069792261 1.091261338 0.999897022 1.016089514 1.017027262 1.083546042 0.989171413 1.023626241 1.059743763 1.052526648 1.010752305 1.009019316 1.007692547 1.036966792 1.008784951 1.099811772 1.057240564 1.071182104 116634799 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.941082149 0.885007155 0.906627959 0.925606622 0.88753921 0.865875932 0.889086099 0.914855967 0.89766755 0.850084656 0.823485776 0.898168468 0.89067065 0.844210007 0.829195844 0.94890493 0.866493753 283474200 acetylglucosaminidase Xanthomonas albilineans GPE PC73 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas albilineans; 1.097508828 1.101135134 1.065893405 1.070407142 1.160064885 1.119832001 1.088965283 1.040369541 1.071398951 1.078420516 1.08698021 1.073701674 1.041815366 1.07084722 1.021651371 1.032976598 1.129677007 1.105581721 90655547 CsoS1_CcmK uncultured marine type-A Synechococcus GOM 4N23 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 0.854491794 0.898880397 0.825069017 0.788939153 0.878164832 395774102 catechol Streptomyces acidiscabies 84-104 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces acidiscabies; 0.823977769 0.850369516 0.843546423 0.883524045 0.852594337 0.88467664 0.817138638 0.837031071 0.86228614 0.878968988 0.839465876 0.887126096 0.867248132 0.887437507 0.817549156 0.838759886 0.844071608 0.869380979 13242044 proO Arthrobacter keyseri Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 1.03695912 0.995354413 1.012588843 1.044186685 1.035812844 1.025281873 1.032453904 1.017377335 1.042133965 1.030898442 1.036580842 1.031196194 0.967732769 0.968054096 0.999121737 0.97612771 1.0440503 1.061219631 83701122 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.997374604 1.094860425 0.993780966 0.987740399 1.000081415 0.997410358 0.935853851 0.952822281 0.98806878 1.041287039 0.993107577 0.98772239 0.933304222 0.97496525 0.916712872 0.943714508 1.016551088 1.032305483 322832784 alginase Rahnella sp. Y9602 Carbon Cycling Carbon degradation Alginate superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Rahnella; 0.971271642 0.87477154 0.952720563 1.000413915 0.913504939 0.996920898 0.968569161 1.011691177 1.022020957 1.000218367 1.062443681 0.983584296 0.957451737 0.926277521 1.035645096 0.977781466 1.021623456 0.947248502 374846270 vgb Nocardia cyriacigeorgica GUH-2 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia cyriacigeorgica; 0.929269099 0.919860291 0.871755494 0.934939545 0.824519171 0.805414294 0.922773434 0.847072586 0.818290732 0.856922541 0.839698008 0.862108906 0.903701013 46850236 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.982179814 0.985118133 0.94360072 0.912757338 0.931176788 0.952538086 0.894858085 0.94695278 0.9643884 0.902355535 0.906596944 0.970246484 0.888567121 0.906836559 0.844341039 0.893585631 0.95342983 0.989722353 288897230 sqr Allochromatium vinosum DSM 180 Sulfur Sulfide Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Allochromatium;species:Allochromatium vinosum; 0.865507585 0.858347001 0.830828172 0.87372822 0.834589131 0.857800408 0.838414439 0.840980352 0.878690718 295058901 cysI Enterobacter cloacae subsp. cloacae ATCC 13047 Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter cloacae; 1.273025397 1.204207284 1.253829166 1.298170299 1.227095202 1.207496259 1.254871667 1.290010755 1.279659925 1.202401576 1.219702351 1.279724641 1.216941552 1.157034465 1.194243871 1.238032355 1.258077204 1.188125812 183580359 gdh Kocuria rhizophila DC2201 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Kocuria;species:Kocuria rhizophila; 0.900628771 0.954896184 0.865156202 0.864797738 0.891032966 0.854242738 0.874877815 0.850847355 0.896908127 0.901014606 0.859801166 0.893841285 0.836250718 0.851767433 0.836674128 0.880197197 0.928723127 84392934 mer Oceanicola batsensis HTCC2597 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola batsensis; 0.808486962 0.795367995 0.821981214 0.806229423 148272611 amyA Clavibacter michiganensis subsp. michiganensis NCPPB 382 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Clavibacter;species:Clavibacter michiganensis; 0.882416979 0.965267132 0.824337337 0.90813006 0.942578108 0.92809964 0.911492253 0.921546543 0.906130646 0.915912128 0.86449685 0.989368482 0.910528161 0.911263426 0.944045328 0.899334087 0.918866237 0.886591826 326951033 catechol_b Pseudonocardia dioxanivorans CB1190 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Pseudonocardia;species:Pseudonocardia dioxanivorans; 1.254839487 1.239226892 1.101380049 1.102433318 1.156140354 1.202182569 1.171089178 1.245314841 1.163288929 1.221218921 1.20614281 1.225878902 1.154449639 1.257453154 1.076545984 1.201634884 1.176118095 1.219520616 304393531 alkk Ahrensia sp. R2A130 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ahrensia; 0.902673742 0.864015537 0.84520072 0.92057895 0.829068286 0.862083978 0.846241215 0.908418323 0.849262944 0.882357216 0.844598852 0.862524798 0.910405729 0.85994546 83369490 amyA Rhodobacter sphaeroides ATCC 17025 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 1.088812784 1.096163481 1.108261901 1.149769077 1.105505619 1.126173788 1.088952829 1.110163569 1.125377971 1.098737871 1.100473267 1.109281528 1.103904862 1.087229493 1.09989965 1.059167965 1.102852978 1.107158283 357078330 pcag Frankia sp. CN3 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 1.013621097 1.015129167 0.980732522 1.002332048 1.01800292 1.023513636 1.001255202 0.997063997 0.998743899 1.042176699 1.013553484 0.990114575 0.999896675 0.981862239 0.896000181 0.974361725 1.022782267 1.050947137 114050057 vana Streptomyces ambofaciens Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 1.539840738 1.533282699 1.513578328 1.524080521 1.486870121 1.551241134 1.493991722 1.496354069 1.498325171 1.504993326 1.502673063 1.493476489 1.45955945 1.459656125 1.440228715 1.477167965 1.51820542 1.498539833 154248300 TIM Xanthobacter autotrophicus Py2 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 1.065947979 1.009455722 1.007122732 1.066131578 0.992074476 1.016336553 0.997416895 1.025097437 1.060097034 1.006559462 1.034185284 1.042424193 0.970133788 0.990409541 0.953002337 0.981569333 1.06071157 1.029384346 327372764 cysJ Burkholderia gladioli BSR3 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia gladioli; 0.980269375 1.034295484 0.95199299 0.998098275 0.997375177 1.050875518 0.944218114 1.004328833 1.003760816 0.98770293 0.947028229 0.997452832 0.953153955 0.962953573 0.985818646 0.963087251 1.018092922 1.058690909 126388874 terc Acinetobacter baumannii ATCC 17978 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter baumannii; 0.772027006 0.874981507 0.845328502 0.888296798 0.871182557 0.771259559 0.868335279 0.864840031 0.919924888 0.843681436 0.840309535 0.836623663 0.876485479 90419809 xyla Aurantimonas sp. SI85-9A1 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Aurantimonas;species:Aurantimonas manganoxydans; 1.071861678 1.067974548 1.050260305 1.102842976 1.083243026 1.074839882 1.060362817 1.061405829 1.050669487 1.047469787 1.047205838 1.132184082 1.064020685 1.007718959 1.023599514 1.061749531 1.095091229 1.046188082 320450065 terc Thermus scotoductus SA-01 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus;species:Thermus scotoductus; 0.808872709 0.809577226 0.843558565 0.87494076 0.864832418 0.831354089 0.809363353 0.802881262 0.837830656 0.837820841 62149186 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 1.026209563 1.032768829 1.057627418 1.079199333 1.041760295 1.036980179 1.012055377 1.105674392 1.032974839 1.042112833 1.010784467 1.048608403 1.017302534 0.974429974 1.015597553 1.023731401 1.061567762 1.022383947 297153785 tfth Streptomyces bingchenggensis BCW-1 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces bingchenggensis; 0.900591949 0.929619914 0.899479468 0.850488833 0.891541767 0.815117451 0.879067584 0.909397577 0.883551688 0.894819324 0.832318604 0.86064938 0.916673411 0.914129545 0.913650847 297203243 amyA Streptomyces sviceus ATCC 29083 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 1.032835072 1.029520966 1.028827262 1.035716203 1.059869495 1.065288768 1.001825921 0.996639496 1.012043869 1.017210143 0.978308917 0.999737725 1.016016263 0.985818328 0.971458496 1.024464149 1.049640348 1.040610963 220729047 rgl Postia placenta Mad-698-R Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Postia;species:Postia placenta; 0.96590117 0.918324111 0.960116095 0.947473905 0.994751442 0.962972241 0.989838707 0.997024516 0.967538676 0.944116915 0.971670682 0.947444261 0.966055607 0.947011083 0.882057386 0.92230326 0.943477544 0.953508171 270291528 xyla Pediococcus acidilactici 7_4 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Pediococcus;species:Pediococcus acidilactici; 0.92374319 0.874336213 0.808641472 0.774465443 0.992358835 0.899443213 0.881318662 0.85408415 0.87757996 0.935559059 0.934574806 0.881003652 0.902744977 0.877388494 0.897204436 0.869643754 0.928896799 390576292 bend Burkholderia terrae BS001 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia terrae; 0.826287551 0.839796943 0.814660203 0.795131937 0.811143479 0.793874669 0.817141553 0.877505435 0.833603132 0.843692761 0.798418655 0.799909586 0.884990589 0.827919926 0.869791033 155964457 nasa uncultured marine bacterium Nitrogen Assimilatory N reduction NA superkingdom:Bacteria; 0.961192986 0.940150136 0.948583717 0.974591836 0.958085156 0.966637423 1.053325289 0.952487252 0.978087717 0.92645547 0.971126696 0.994122009 0.905342237 0.930611617 0.875482025 0.958042089 0.964718229 0.924228509 315506270 amyA Micromonospora sp. L5 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Micromonospora; 1.038452666 1.084401461 1.006777427 1.054521008 1.00287144 1.042265655 0.984616107 0.969272142 1.020833368 1.017488845 1.016547088 0.981881092 1.000814722 1.005315549 0.959068224 0.987861489 1.043640827 1.053278491 258544992 cysI Cardiobacterium hominis ATCC 15826 Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Cardiobacteriales;family:Cardiobacteriaceae;genus:Cardiobacterium;species:Cardiobacterium hominis; 0.934878786 0.932435301 0.914872036 0.928347344 0.923344173 0.885129713 0.88286538 1.47292207 0.934737721 0.938843063 0.945089737 0.885143265 0.863391667 0.911266326 0.860146614 0.927057159 0.841632007 0.927318598 71273718 mnp Trametes versicolor Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Trametes; 1.283835947 1.272935918 1.219614226 1.254046361 1.228084618 1.256729424 1.205459602 1.24062682 1.20408829 1.218006583 1.20667367 1.234672255 1.195696105 1.190285616 1.184020305 1.217921377 1.264206076 1.243538984 219965760 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.204275858 1.178558268 1.19061239 1.211575979 1.12829551 1.15880633 1.142326441 1.172018324 1.169098023 1.141324234 1.153099306 1.182979142 1.145584863 1.111193346 1.128056802 1.148885247 1.195560285 1.138878253 357941172 chitinase Burkholderia sp. YI23 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 0.893866264 0.864532411 0.892914786 0.817713427 0.875081729 0.900804395 0.810212161 0.807818043 0.872834127 0.883895136 7013021 exoglucanase Trametes versicolor Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Trametes; 1.014368644 1.041025378 1.031634618 0.99934301 0.983234948 1.058934028 0.964210533 1.019267591 0.991511732 1.00883923 0.969067179 1.013428136 0.994050603 0.951078786 0.923088502 0.983174772 1.037072336 1.020625978 13249571 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.896861789 1.028565978 0.852398163 0.927291569 0.944598487 0.852404641 0.906190715 0.876475867 0.918483853 0.834959229 0.846903892 0.929189468 0.957991366 0.806043326 0.925502155 0.865012996 0.885079999 88062453 dsra uncultured bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.890867961 0.911745064 0.888757039 0.929087974 0.903705038 0.835351496 0.8720762 0.895447686 0.853528061 0.864661251 0.902315917 0.862475816 0.812293246 0.830356266 0.86405237 0.81807276 338732190 ppx Simkania negevensis Z Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Chlamydiae;class:Chlamydiia;order:Chlamydiales;family:Simkaniaceae;genus:Simkania;species:Simkania negevensis; 1.148215514 1.125103326 1.096734907 1.098072105 1.107355534 1.128421636 1.068643323 1.15163737 1.071719647 1.067406918 1.084402377 1.062915187 1.075975219 1.084132894 1.024138895 1.043962356 1.082564484 1.120875056 90426095 beta_agarase Rhodopseudomonas palustris BisB18 Carbon Cycling Carbon degradation Agar superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 0.987474583 0.974719368 0.987789347 0.964055863 1.018753161 1.000739135 0.992532157 0.903269998 0.941753623 0.992255848 0.968624602 0.912042307 0.879429585 0.94105618 0.845424037 0.9228468 0.962964378 1.007322832 157060173 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.965759871 0.907384799 0.940624692 0.989431342 0.942869072 0.948979001 0.951825986 0.996147288 0.99041649 0.910630042 0.89894751 0.936121464 0.919485252 0.894312759 0.983221893 0.926864244 0.974441249 0.934299812 323529399 tktA Burkholderia sp. CCGE1001 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 0.953839931 0.80642092 0.838896095 0.80997123 0.815531131 0.791129266 0.811343175 0.870101959 0.801151172 0.831250366 0.850016299 110819013 chnb Rhodococcus sp. RHA1 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 0.946129508 1.035803539 0.948015961 0.992823132 0.946772547 0.948121275 0.962865206 0.871120575 0.864235217 0.942721992 0.923462389 0.932251309 0.919201958 0.944568876 0.931280323 0.91892458 0.958726361 0.963894728 254820638 cutinase Mycobacterium intracellulare ATCC 13950 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium intracellulare; 1.046846622 1.062753487 1.038433041 1.078264151 1.021051193 1.067352263 1.021888482 1.026606124 1.010038238 1.026861937 1.028677662 1.036574492 1.045970763 1.031908549 1.007037567 1.019365656 1.055304216 1.028204437 196226253 amyA Chthoniobacter flavus Ellin428 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Verrucomicrobia;class:Spartobacteria;genus:Chthoniobacter;species:Chthoniobacter flavus; 0.97459285 1.043966751 0.965280151 1.024091145 1.005086415 0.982929346 0.972679609 1.013933919 1.010708049 1.000021322 0.995208574 1.003725441 1.004646589 0.985960342 0.949419142 0.987141339 1.013072085 1.007560809 229611249 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.880349246 0.878159544 0.92557368 0.876416067 0.853862505 0.906824976 0.811107926 0.874217756 0.864900683 0.925020588 0.870256589 0.910108831 0.869965641 0.883158441 0.820971817 0.867259803 0.936833265 325916102 xylanase Xanthomonas vesicatoria ATCC 35937 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas vesicatoria; 1.137552215 1.129844898 1.127400872 1.123264916 1.107523375 1.125099177 1.088666268 1.131905141 1.15048019 1.112241917 1.099326356 1.11510059 1.092923906 1.090596641 1.047464073 1.092888861 1.136136937 1.131651666 60116876 protease_serine_fungi Davidiella tassiana Carbon Cycling Carbon degradation protein superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Capnodiales;family:Davidiellaceae;genus:Davidiella; 0.91651773 0.926425451 0.845290333 0.922994199 0.889731461 0.909164713 0.897155022 0.868276888 0.91352207 0.896643031 0.859202793 0.942111249 0.837413229 0.883760018 0.860664053 0.874446988 0.931230813 0.874746583 77459186 catechol Pseudomonas fluorescens PfO-1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 1.049210765 0.999761673 1.056281198 1.03999762 1.037702493 1.010282647 1.036574535 1.067459877 1.033848505 1.032821929 0.988699377 1.027981194 1.000103746 0.954211529 0.948389101 0.940497535 1.005341431 1.009125271 374573853 FBPase Bradyrhizobium sp. WSM471 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 1.184690032 1.158375524 1.151225391 1.159475032 1.155733335 1.174644054 1.157092068 1.154627149 1.156117869 1.171090319 1.160841973 1.149495822 1.145328393 1.128275565 1.122413284 1.142820527 1.160670832 1.169263066 95133480 nrfa Desulfuromonas acetoxidans DSM 684 Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Desulfuromonadaceae;genus:Desulfuromonas;species:Desulfuromonas acetoxidans; 0.967290431 0.95236396 0.939024508 0.920502769 0.94202927 0.962984952 0.974419603 0.952505503 0.951576366 1.01045041 0.984667965 0.978477301 0.962549361 0.972696918 0.872956753 0.928083629 0.936570452 0.991720696 386723166 B_lactamase_A Paenibacillus mucilaginosus K02 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 1.286912167 1.242092862 1.241636638 1.273263716 1.254100074 1.276197041 1.23185646 1.24806969 1.280355395 1.239542556 1.238382716 1.264867843 1.23794323 1.203879303 1.2073921 1.181738558 1.282758252 1.251539812 226241359 cysJ Rhodococcus opacus B4 Sulfur Reduction NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus opacus; 0.788907328 0.782679372 0.793892941 0.769549517 0.801707217 0.773086444 0.809136298 0.822214551 0.801855749 0.795888544 0.827922052 26278694 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.852008001 0.905820088 0.897848867 0.855230307 0.851234527 0.856754392 0.833127885 0.851956818 0.865730455 0.887411935 0.907238788 0.879072748 0.874114662 0.860419459 0.862070544 0.903779319 0.863155809 326385161 arsc Gordonia neofelifaecis NRRL B-59395 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia neofelifaecis; 0.900923315 0.925500176 0.883232319 0.840440578 0.876645747 0.874219112 0.88230228 0.850283092 0.90313747 0.884992842 0.886791597 0.893726403 0.870397436 0.860709207 0.877581343 0.89262475 0.923047899 292665135 ppx Candidatus Puniceispirillum marinum IMCC1322 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;genus:Candidatus Puniceispirillum;species:Candidatus Puniceispirillum marinum; 0.881280812 0.835409385 0.883365478 0.921854514 0.887535253 0.845676217 0.857071822 0.932385378 0.908604014 0.883189384 0.856546371 0.873905504 0.883095305 0.812374856 0.826879305 0.83392294 0.917534371 0.841377208 300311094 TIM Herbaspirillum seropedicae SmR1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herbaspirillum;species:Herbaspirillum seropedicae; 1.477086156 1.449180813 1.452488007 1.45327521 1.438112135 1.471307552 1.443148053 1.471259405 1.451466747 1.412575552 1.442018456 1.453210633 1.437379546 1.372378847 1.418250767 1.413926178 1.458508443 1.3882599 71915762 cellobiase Thermobifida fusca YX Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Thermobifida;species:Thermobifida fusca; 1.14075876 1.178354519 1.125481125 1.139590359 1.124616927 1.16955488 1.127769818 1.062176507 1.233520814 1.163812788 1.134659295 1.134554145 1.131266462 1.131564133 1.096449278 1.136445674 1.140798315 1.163395977 298291286 GAPDH_Calvin Starkeya novella DSM 506 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Starkeya;species:Starkeya novella; 1.267466678 1.239617258 1.261990061 1.242791676 1.202690042 1.268032308 1.180012215 1.212941273 1.244407774 1.232853828 1.222860534 1.229460842 1.208647912 1.212428064 1.203636912 1.222526658 1.264929336 1.242638089 364000869 mult_ring_12DiOx Mycobacterium abscessus subsp. bolletii BD Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium abscessus; 0.949936906 0.996415766 1.005219585 1.038686517 0.998565024 0.957074982 1.028334582 0.900344335 0.985432572 1.003728878 0.957530356 1.023051498 0.946495755 0.963321737 0.930915839 0.947817415 0.939427376 0.961327126 359835666 cutinase Actinoplanes sp. SE50/110 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes; 0.937678178 0.898232558 0.940544998 0.926676141 0.855983398 0.860240992 0.863298686 0.868585354 0.916029509 0.891561379 0.857116675 0.935649829 0.842008813 0.8683966 0.875949516 0.830452611 0.945230218 0.947331041 320448245 pula Streptococcus equinus ATCC 9812 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus equinus; 0.900852967 0.878302476 0.896091259 0.985837233 0.946701011 0.890908059 0.963950705 0.929343113 0.940909199 0.864756398 0.950532255 0.931083247 0.943494827 0.890442433 0.873844534 0.867999935 0.890855572 0.898836975 258512385 cysI Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 Sulfur Other NA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Alicyclobacillus;species:Alicyclobacillus acidocaldarius; 1.155590719 1.0939247 1.113977298 1.141811555 1.147995734 1.136084765 1.124631382 1.138544874 1.135155058 1.121788134 1.111884876 1.128925891 1.110389657 1.08974405 1.115934723 1.124842444 1.145132727 1.114542794 94311748 cysI Cupriavidus metallidurans CH34 Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 0.9507698 0.978283436 0.917364463 0.976352605 0.899578556 0.930817389 0.875051826 0.916637294 0.875067925 0.943941583 0.90197042 0.935845751 0.90757004 0.884917437 0.857527427 0.884085475 0.984405797 0.943506627 374724917 fthfs uncultured marine group II euryarchaeote Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Archaea;phylum:Euryarchaeota; 0.889837781 0.872484473 0.870302987 0.898388485 0.882575788 0.883124711 0.873052515 0.884678857 0.901863733 0.897176054 0.899056477 0.891606685 0.86233102 0.806904272 0.813545488 0.881721473 0.919158856 386391496 amyA Desulfovibrio sp. U5L Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 1.155647208 1.173780185 1.122927356 1.123435376 1.111386554 1.139462277 1.090616006 1.102038954 1.115282306 1.135645568 1.129268276 1.116603323 1.122026445 1.107323384 1.091880634 1.090621298 1.156752241 1.184318426 78168788 amyA Synechococcus sp. CC9902 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 0.968952825 0.962759019 0.971475777 0.965010044 0.939603901 0.970308999 0.921234543 0.967668337 0.968291619 0.941343545 0.894938549 0.92213357 0.906621342 0.890196464 0.873988697 0.920480072 0.958903226 0.989424367 187924691 nitrilase Burkholderia phytofirmans PsJN Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 0.778462528 0.86710796 0.819833999 0.802108212 359736225 amie Rhodococcus pyridinivorans AK37 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus pyridinivorans; 0.791670759 0.862230859 0.866692472 0.825039659 0.897306221 0.909935552 0.84897205 0.862737913 0.874493197 0.836642935 0.834079394 0.825913824 0.912762313 157780232 hsp90_Choanoflagellida Savillea micropora Other Phylogenetic NA superkingdom:Eukaryota;order:Choanoflagellida;family:Acanthoecidae;genus:Savillea; 0.916304545 0.930384194 0.915416619 0.936761682 0.848260749 0.935892132 0.853074416 0.940929444 0.928666075 0.934374427 0.896670846 0.925726469 0.855056876 0.909000596 0.848654978 0.885866055 0.907501525 0.918960134 322718567 phenol_oxidase Flammulina velutipes Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Physalacriaceae;genus:Flammulina; 1.042751691 1.039327882 1.051973215 1.08447827 1.033309253 1.093271725 1.006898917 1.020873242 1.056554224 1.035061456 1.041480826 1.030735807 1.012561166 1.037997811 1.000188453 1.03049728 1.106820568 1.027150102 119467366 exopolygalacturonase_fungi Neosartorya fischeri NRRL 181 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 1.174151805 1.140898885 1.133817901 1.11941592 1.134571068 1.151291189 1.066618088 1.11778036 1.117553106 1.139174744 1.12784519 1.114703791 1.119549117 1.142928537 1.110680658 1.135126226 1.138865051 1.144972397 389793856 catechol Rhodanobacter fulvus Jip2 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Rhodanobacter;species:Rhodanobacter fulvus; 1.071508868 1.032019056 0.957267139 0.973292431 0.957422887 0.966458891 0.954044082 0.925430854 0.986624495 0.952497456 0.983398631 0.999666615 0.94706786 0.919492507 0.937138794 0.959461711 0.99552563 0.988787883 302696029 Glucose_oxidase_fungi Schizophyllum commune H4-8 Carbon Cycling Carbon degradation glucose superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 1.033239978 0.993622756 1.012465934 1.007487277 1.020966586 0.976442418 0.95928927 0.985340863 0.987840696 163811721 rd Dehalococcoides sp. VS Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 0.901175666 0.891523521 0.855123313 0.894152472 0.833356226 0.915955219 0.895278298 0.883056736 0.868567439 0.873463461 0.846326221 0.88825218 0.843930453 0.863866712 0.83619123 0.861988502 0.866701444 391220683 terc Opitutaceae bacterium TAV1 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 1.436962171 1.399716913 1.373750315 1.406516982 1.360488906 1.417453735 1.355441481 1.378371753 1.361698892 1.363009066 1.361684207 1.380706116 1.354481841 1.342898496 1.340103725 1.367553173 1.41622707 1.364313725 83646392 phytase Hahella chejuensis KCTC 2396 Phosphorus Phytic acid hydrolysis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Hahellaceae;genus:Hahella;species:Hahella chejuensis; 0.887099544 0.836447639 0.839625472 0.840970447 0.836482851 58613941 mdla Pseudomonas fluorescens Organic Remediation Aromatics Aromatic alpha hydroxy acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.82331983 0.827019301 109702617 cysI Pseudoalteromonas atlantica T6c Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas atlantica; 0.776671228 0.835537553 0.827177413 0.829122128 0.80074447 0.825356066 0.887786609 0.806291043 0.853376216 0.842503322 0.813130569 0.823780578 0.891876027 0.84086896 30138582 hao Nitrosomonas europaea ATCC 19718 Nitrogen Nitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas;species:Nitrosomonas europaea; 0.815328115 0.790914238 0.814816052 0.817489856 0.853505095 0.839520229 0.904856276 0.806403863 0.787729917 0.905888422 0.892564492 0.860431176 0.835900073 0.802970556 0.767716451 0.854214169 83836470 FBPase Roseovarius nubinhibens ISM Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius;species:Roseovarius nubinhibens; 0.912680687 0.878510318 0.837748379 0.917957164 0.870228486 0.867250133 0.876459606 0.837777252 0.899039061 0.889459286 0.91662098 0.873058531 0.853544173 0.903889225 0.885322292 0.903926506 0.886734696 84684901 TIM Maritimibacter alkaliphilus HTCC2654 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Maritimibacter;species:Maritimibacter alkaliphilus; 1.586424886 1.543625633 1.552568824 1.560220482 1.535976584 1.575377012 1.536231921 1.578557833 1.538499303 1.515713307 1.541090611 1.590088696 1.508567242 1.518871562 1.519098055 1.557960275 1.52827753 1.519961646 311217934 tktA Rhodomicrobium vannielii ATCC 17100 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Rhodomicrobium;species:Rhodomicrobium vannielii; 0.803943205 0.814192542 0.830397128 0.795690809 0.819837342 0.830504328 371650884 amyA Lachnospiraceae bacterium ACC2 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Stomatobaculum; 0.874944896 0.868073889 0.853382263 0.881978284 0.882548214 0.842516601 0.845906224 0.845874283 0.898144529 0.897932741 0.799760073 0.81662367 0.833985462 0.87067829 0.819423258 0.833063405 0.864802233 91690366 exaa(moxf) Burkholderia xenovorans LB400 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 1.026265897 1.069624001 1.00388807 1.00675481 0.998457737 1.012535061 1.009749684 0.998391673 1.028668453 0.99032868 0.977955019 1.019300884 0.992805252 0.944693726 0.949249787 0.943156 0.990246701 0.991695943 357174165 cda Clostridium sp. DL-VIII Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium; 0.990712118 1.024477164 1.023517658 1.015680349 0.970423557 1.028189975 0.951550321 1.064118466 1.005559579 1.040172993 0.979789112 1.086548316 0.973793906 0.996126248 0.940179713 0.992666052 1.006614662 1.021616552 254460155 FBP_aldolase Rhodobacterales bacterium HTCC2083 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 0.83701263 0.819788705 0.84572964 0.881072288 0.809692803 0.822500547 0.803410043 0.853029097 0.833076802 170027533 napa uncultured bacterium Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria; 0.859508962 0.823168701 0.854388128 0.869358437 0.866398712 0.82103266 0.859184812 0.856853358 0.883668785 0.838018449 0.848162105 0.817532188 0.841538629 0.825295348 94983173 silicon_transporter NA Metal Homeostasis Silicon Transport 0.951168459 0.908357911 0.937156436 0.901186039 0.904683931 0.929470639 0.952874864 0.897862172 0.883413229 0.950998463 0.912269806 0.904091582 0.795955143 0.893280327 0.878037863 0.845903112 0.895154788 83415007 phenol_oxidase Termitomyces sp. NS/Mg Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Lyophyllaceae;genus:Termitomyces; 0.839577615 0.812357431 90204437 urec Mycobacterium vanbaalenii PYR-1 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 1.143978827 1.217755244 1.140363718 1.146208998 1.150266121 1.226915479 1.143018873 1.152240733 1.165975205 1.178159705 1.152890494 1.17721709 1.152536119 1.169129073 1.143241858 1.170900636 1.17460681 1.188469901 255267507 CsoS1_CcmK Bryantella formatexigens DSM 14469 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Marvinbryantia;species:Marvinbryantia formatexigens; 0.955190454 0.938277752 0.918033407 0.969258031 0.941786791 0.950926464 0.936548041 0.942451492 0.949579352 0.955072484 0.938349497 0.939535946 0.942502967 0.955878424 0.876656587 0.932276423 0.985453472 0.930439821 283458650 ppx Rothia mucilaginosa DY-18 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Rothia;species:Rothia mucilaginosa; 0.998730066 1.022251202 0.975091544 0.98889631 0.994553672 0.999276145 0.973424975 0.952841439 0.950870748 1.021788351 0.991272541 1.013652318 0.994525306 1.018463101 0.95968458 0.971740989 1.006644307 1.030261501 159180621 fccab alpha proteobacterium BAL199 Sulfur Sulfide Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 1.264010454 1.252126551 1.260088357 1.245160838 1.241799563 1.289598743 1.23903467 1.224993448 1.224323413 1.203110032 1.220980925 1.215921787 1.214460589 1.201839995 1.179330976 1.258019432 1.247327947 1.260149417 299798751 RgaE Amycolatopsis mediterranei U32 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 0.869176447 0.85144002 0.849863918 0.856462931 0.855780694 0.845586175 0.811300037 0.838949132 0.847437622 0.821503804 0.85894727 0.857515589 0.809408225 0.7830225 0.863967393 0.845049173 309261781 narg Diaphorobacter sp. R-26815 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Diaphorobacter; 1.096739819 1.083475729 1.074184492 1.081238503 1.066295579 1.115599887 1.062669124 1.096611124 1.04098532 1.011201452 1.08157357 1.07184745 0.987905097 0.986337896 0.975798449 1.034575946 1.062685775 1.018557358 351780661 alginase Yersinia enterocolitica subsp. palearctica PhRBD_Ye1 Carbon Cycling Carbon degradation Alginate superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia enterocolitica; 0.856681982 0.832019584 114537112 nifh Fulvimarina pelagi HTCC2506 Nitrogen Nitrogen fixation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Fulvimarina;species:Fulvimarina pelagi; 1.230454197 1.21101981 1.212202777 1.214899589 1.181938332 1.260574334 1.172173626 1.184111257 1.213866136 1.230826096 1.195710629 1.185931606 1.205605551 1.20649697 1.165208436 1.210951922 1.213446159 1.222520232 77378585 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.782551715 0.84524944 0.83361068 0.826315671 0.858701889 0.808866141 0.812199529 0.793329922 0.818846216 0.840479277 228480945 catechol_b uncultured bacterium Organic Remediation Aromatics Other aromatics superkingdom:Bacteria; 0.792283838 0.832882991 0.847809398 0.808576405 46307906 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.813749294 0.819528495 0.853147428 0.837089837 0.95061667 0.813567185 0.837707582 0.8649699 45386193 narg unidentified bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.864750284 0.85781921 0.905613828 0.891578719 0.859765715 0.911066461 0.830750523 0.832711493 0.820169915 0.890619733 0.854462181 0.838678402 0.823027495 0.862307389 0.885287369 0.8646222 0.869221105 0.876915067 21220895 ara Streptomyces coelicolor A3(2) Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 1.036581867 1.008864471 1.020756297 1.039959468 1.033269776 1.038542669 1.025826917 1.029616768 1.014837393 1.008523492 1.020447734 1.015501239 1.001882003 0.97889812 0.915875912 0.953130512 1.038006374 1.030189184 17385522 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.906405576 0.910159023 0.930181962 0.866921321 0.884010936 0.918607863 0.876113821 0.872835887 0.927720471 0.940580058 0.837497591 0.856606228 0.840215448 0.920152916 0.813722905 0.895220167 0.925764324 0.918963633 377526977 catechol_b Gordonia sputi NBRC 100414 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia sputi; 1.235679267 1.217730738 1.235823125 1.214214313 1.213349636 1.20801973 1.182439709 1.186493647 1.206240971 1.20193316 1.232509271 1.217011941 1.194083557 1.16421606 1.169788171 1.182332268 1.211415593 1.201009686 148537349 one_ring_23diox Burkholderia sp. ASS14 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 0.847796884 0.812700732 56419238 amyA Geobacillus kaustophilus HTA426 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus;species:Geobacillus kaustophilus; 1.015887131 1.070480316 1.016078445 1.025167348 1.035318833 1.121512642 1.009837342 1.011688457 1.04772441 1.126333395 1.132177571 1.037945341 0.998953472 1.022887759 0.917822117 1.007487709 1.096716955 1.053122703 187734877 acetylglucosaminidase Akkermansia muciniphila ATCC BAA-835 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobiaceae;genus:Akkermansia;species:Akkermansia muciniphila; 0.820487696 0.80387405 0.850471352 0.834804653 0.833039225 0.850342123 399231174 pcpb Mycobacterium smegmatis str. MC2 155 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 0.914644734 0.956355253 0.910570206 0.90952243 0.963164549 0.930988022 0.906601777 0.939679077 0.934615618 0.953184108 0.864518849 0.898010392 0.893901396 0.959955199 0.84859628 0.872021615 0.929925203 0.970277683 41395927 cutinase Mycobacterium avium subsp. paratuberculosis K-10 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 1.031306255 0.98969182 0.99381641 1.020654454 0.971023742 1.016022993 0.973388415 1.002865037 1.014144347 0.980252022 0.96088442 0.985728675 0.949733455 0.983449363 0.977047034 0.975525435 1.034776326 0.998885645 3805970 napa Rhodopseudomonas sp. Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas; 0.796428055 0.795795019 0.824766824 0.867395052 0.807483217 0.819144367 0.789063122 0.822622198 0.883948798 186463160 amyA Nostoc punctiforme PCC 73102 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc;species:Nostoc punctiforme; 1.264223218 1.258622435 1.255743444 1.267023546 1.247898945 1.246029626 1.255547505 1.305143825 1.24923267 1.237368513 1.244081798 1.278962641 1.264256107 1.200525371 1.253824485 1.235776718 1.252066839 1.194747052 126640997 vana Acinetobacter baumannii ATCC 17978 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter baumannii; 0.804892595 0.853118251 0.768765809 0.847063768 320150339 amyA Thermus scotoductus SA-01 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus;species:Thermus scotoductus; 0.933959494 0.997453413 0.946297304 0.964847646 1.014220581 1.003635359 0.914536681 0.899268541 0.917405328 0.938404714 0.880693354 0.922984744 0.939244914 0.933610293 0.915749436 0.908646468 0.986489803 0.939791355 317970497 ppx Synechococcus sp. CB0205 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 0.816476437 0.802950338 0.80820069 0.82925802 0.854780911 0.846951252 0.838503796 0.865134104 0.810825071 0.811032572 0.843449963 0.851182926 0.869252064 311743137 linb Aeromicrobium marinum DSM 15272 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Aeromicrobium;species:Aeromicrobium marinum; 1.054343634 1.03604277 1.051028322 1.060624143 1.016778651 1.011115101 1.004914333 1.060997249 1.032085169 1.040617935 1.042600507 1.058592246 0.982674434 1.014107586 0.957049944 0.994051157 1.054901166 1.019374516 358752685 mer Granulicella mallensis MP5ACTX8 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Granulicella;species:Granulicella mallensis; 1.01625243 1.047286883 0.979809916 1.048369015 0.979146967 1.009926668 0.964349343 0.961645575 1.009412747 1.026568731 0.986404973 1.006641811 1.111255543 0.96510958 0.945856163 0.99724105 1.028897466 1.010598048 269832894 chitinase Vibrio harveyi 1DA3 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio harveyi; 0.9738121 0.978091076 0.919133109 1.053529777 0.963753439 0.99227286 0.940487161 0.945838737 0.966990363 0.992693854 0.947215889 0.932757867 0.984622384 0.997439266 0.880057402 0.937311989 0.983662523 1.026801305 332666918 poba Haliscomenobacter hydrossis DSM 1100 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Saprospiraceae;genus:Haliscomenobacter;species:Haliscomenobacter hydrossis; 0.768862888 0.882325535 0.820276269 0.897981708 0.860013888 0.885344141 0.87015101 0.846426404 0.912321833 0.84086858 0.869027889 0.886925274 0.855214245 0.844780685 0.873822382 0.885364323 0.859811026 0.881384737 242129864 pectinase (pectate_lyase) Dickeya dadantii Ech703 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya dadantii; 0.913320362 0.889365614 0.963692272 0.940774115 0.904534048 0.825943327 0.896134096 0.888513568 0.909517713 0.907582253 0.926776121 0.937756379 0.904133707 0.933012281 0.900233762 0.908832267 0.878485833 0.855544154 209897542 ppx Enterobacter cancerogenus ATCC 35316 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter cancerogenus; 1.17683664 1.152583198 1.174630218 1.198792172 1.125328427 1.174337851 1.153506123 1.192439318 1.172162062 1.145841146 1.131663086 1.184842698 1.1175582 1.12721405 1.109407163 1.170538185 1.171328694 1.154160049 152967019 amyA Kineococcus radiotolerans SRS30216 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Kineosporiaceae;genus:Kineococcus;species:Kineococcus radiotolerans; 0.811397157 0.806279946 0.809350673 0.857995137 0.820700299 0.823681962 0.810764659 0.812948983 0.824593914 0.827081299 0.86031463 0.791209386 0.818627195 161380189 ppx Oceanibulbus indolifex HEL-45 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanibulbus;species:Oceanibulbus indolifex; 1.149933276 1.113477742 1.167156264 1.167006844 1.14237676 1.1624163 1.135781381 1.164217451 1.137732693 1.101596467 1.144669484 1.137262009 1.115077714 1.081511311 1.070733036 1.097462569 1.174542828 1.113457282 222479925 amyA Halorubrum lacusprofundi ATCC 49239 Carbon Cycling Carbon degradation Starch superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halorubrum;species:Halorubrum lacusprofundi; 1.265421733 1.267005936 1.251236546 1.224332727 1.25076732 1.256984785 1.224963119 1.222236263 1.202378484 1.218253534 1.231012289 1.222004472 1.216577514 1.215989721 1.19287244 1.219367683 1.239391504 1.236158302 90104153 arsc Rhodopseudomonas palustris BisB18 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 1.28867229 1.292300355 1.256622996 1.24021798 1.255337431 1.304736855 1.256700239 1.250518168 1.229609794 1.227077235 1.257513554 1.234261367 1.247416007 1.242015217 1.250500402 1.272347973 1.251296119 1.248524541 94550000 amyA Candidatus Koribacter versatilis Ellin345 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Acidobacteria;genus:Candidatus Koribacter;species:Candidatus Koribacter versatilis; 1.065018537 1.013025416 1.040268259 1.133934072 1.00629903 1.027797271 1.046667491 1.11123834 1.089210826 1.011573527 1.035935185 1.076957858 0.988061944 0.976620709 1.012097438 1.040578829 1.080727682 1.020381694 377528789 bphF1 Gordonia sputi NBRC 100414 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia sputi; 0.988396629 1.024312947 1.120787109 1.021738774 1.030416369 1.159521352 0.951321996 0.993735695 1.021360079 1.035098216 1.022644208 1.013923091 1.10292788 1.064435134 1.150281306 1.107937445 1.103010535 1.097341442 206677631 rd Rhodobacterales bacterium HTCC2083 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 1.262055459 1.241780335 1.243012529 1.256714777 1.246905245 1.256012484 1.229768971 1.246074577 1.242928434 1.217398892 1.227649834 1.2502668 1.215968402 1.205472055 1.222732149 1.220435391 1.262580572 1.228477452 317170879 TIM Mesorhizobium ciceri biovar biserrulae WSM1271 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium ciceri; 1.195343894 1.158204878 1.139397411 1.179977496 1.150952836 1.176960712 1.134020113 1.157882982 1.150214014 1.135352243 1.167289073 1.198201774 1.137343164 1.11678686 1.080109739 1.132929556 1.189676908 1.150220486 261419946 amyA Geobacillus sp. Y412MC61 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 0.813414172 0.848021332 63029776 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.280798837 1.221833332 1.290716237 1.283549365 1.247346336 1.357106797 1.245206817 1.258420187 1.264836693 1.257319477 1.269092123 1.267967044 1.219739636 1.214415476 1.226201535 1.287335646 1.332135118 1.233692262 253576694 amyA Paenibacillus sp. oral taxon 786 str. D14 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus sp. oral taxon 786; 1.050841953 1.093029669 1.04797029 1.120225908 1.103892792 1.072829786 1.120930907 1.025175702 1.08731146 1.072904991 1.107975492 1.124944175 1.051950989 0.969834369 0.942400025 1.024477998 1.043841094 1.025323807 328880150 phytase Streptomyces venezuelae ATCC 10712 Phosphorus Phytic acid hydrolysis NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces venezuelae; 0.966150116 0.980493711 0.925846652 1.026047771 0.971894264 0.957776629 0.938706564 0.925856019 0.96383243 0.957083352 0.91043928 0.958092992 0.923595438 0.942211171 0.907113483 0.934583534 0.991371516 0.960721278 192764350 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.774973342 0.799186814 0.796981348 0.823153904 353211452 fthfs Hyphomicrobium denitrificans 1NES1 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium;species:Hyphomicrobium denitrificans; 1.120942617 1.112851649 1.115715065 1.104367887 1.057543037 1.114859618 1.088343602 1.08767243 1.084173237 1.112255219 1.074414306 1.1280534 1.065094924 1.092205722 1.066245138 1.095433081 1.128850928 1.132399015 192293040 dehh109 Rhodopseudomonas palustris TIE-1 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 0.930639866 0.894327706 0.954291607 0.954480219 0.925706793 1.027337819 0.954580429 0.899522262 1.088218513 0.974796875 0.969258953 0.937585115 0.963939477 0.901999381 0.943954174 0.875081972 0.944500414 0.934767105 381165047 amyA Saccharomonospora azurea NA-128 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora azurea; 1.426540994 1.401981916 1.386464604 1.397142818 1.393760013 1.40604833 1.366972657 1.376796354 1.382017687 1.37049302 1.376838811 1.388837934 1.371926339 1.330418199 1.390436839 1.36777424 1.416305742 1.373762887 28971621 xylg Pseudomonas fluorescens Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.982243834 0.992659489 0.924855728 0.998440565 0.928787226 0.981625592 0.963279526 0.982544855 0.980156014 0.977677351 0.948212175 0.948877332 0.906463538 0.961776022 0.96231846 0.914540042 0.972087106 0.991724087 2597838 nirk Bradyrhizobium japonicum Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.944886457 0.970416417 0.921002611 0.913699671 0.857276253 0.880752855 0.888886352 0.967532794 0.909547919 0.912526501 0.90968894 0.913146681 0.860067618 0.860288785 0.938545396 0.882380315 0.91434883 0.912066973 84383826 amyA Janibacter sp. HTCC2649 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Janibacter; 0.950226486 0.940792606 0.909922759 0.960619249 0.931493964 0.924184288 0.937160589 0.944401288 0.930721422 0.933956669 0.917878668 0.941476766 0.864817332 0.920141713 0.850158862 0.935504953 0.967180469 226235517 phenol_oxidase uncultured bacterium Carbon Cycling Carbon degradation Lignin superkingdom:Bacteria; 0.825390493 0.787865236 0.850636584 0.869721376 0.810581784 0.851343539 0.843385919 0.828525021 0.837216969 0.839317045 0.865008359 0.834903428 0.880806237 407698024 alkk Alcanivorax dieselolei B5 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax;species:Alcanivorax dieselolei; 1.018834664 0.996523164 0.931568944 0.974199427 0.936410305 0.958217786 0.962174134 0.913643172 0.977181775 0.962193283 0.94867876 0.975532454 0.967293064 0.955876165 0.899712784 0.984286391 0.993629207 0.975978061 398088945 pcag Rhizobium sp. CF080 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 1.146808046 1.162563799 1.10205481 1.128754992 1.114031696 1.145199807 1.060715548 1.10050929 1.06088796 1.124672487 1.07584925 1.107097678 1.082055975 1.071492178 1.065218329 1.103845977 1.110014266 1.130054926 194713779 dmsa Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 0.911804147 0.852634639 0.822877273 0.886386391 0.937470193 0.886277526 0.82993036 0.856025745 0.882506848 0.803096711 0.876384092 0.81475947 0.840659936 0.878216032 0.868806134 332372369 rubisco uncultured bacterium Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria; 0.820302286 0.805109771 318059357 amyA Streptomyces sp. SA3_actG Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 0.88148121 0.877854678 0.866670422 0.864861799 0.86417389 0.882188273 0.855583718 0.866322368 0.859203879 0.886462694 0.870327667 0.876011904 0.837638681 0.812228802 0.853506504 0.823692296 0.889217333 0.924399018 76577472 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.029192894 1.043061623 1.054632727 1.030953117 1.039463478 0.995056366 1.06590796 1.085855605 1.053656643 1.038189258 1.018977829 1.01318697 0.985723948 0.981887785 0.961575154 1.063017058 1.026893177 1.065897311 85078541 cellobiase Neurospora crassa OR74A Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Neurospora;species:Neurospora crassa; 0.879417122 0.857898537 0.889366298 0.806894599 0.847675422 0.810237391 0.864732084 0.864055575 0.835076612 0.797590949 0.826148326 0.818201853 0.844156808 0.835505296 0.86070157 0.810052353 296270224 amyA Thermobispora bispora DSM 43833 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Thermobispora;species:Thermobispora bispora; 0.996400948 0.980679464 1.002209012 0.969864534 0.983974763 1.021163567 0.97399024 0.985371918 0.981924379 0.97873343 1.030716432 1.026385049 0.94722821 0.968863957 0.963923748 0.934136612 1.006535329 1.004205512 209520283 glucoamylase Burkholderia sp. H160 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 0.998157353 0.862614093 0.975949161 0.838890564 0.950482056 0.968426331 0.913871267 0.803110922 0.86955955 0.97679289 1.003699614 0.890561036 0.871036991 1.026258806 1.061276844 0.860655461 0.945250229 0.934049921 385843022 catechol bacterium enrichment culture clone 12CTD Organic Remediation Aromatics Other aromatics superkingdom:Bacteria; 1.04032241 0.972444904 0.942361838 0.994697387 0.931670931 0.983650667 0.925930505 0.985392087 0.975370818 0.972656249 0.910783776 0.979698088 0.938150624 0.951583047 0.929946286 0.972909977 1.019649152 0.964459317 374851108 exaa(moxf) uncultured gamma proteobacterium Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 1.000062503 0.978239323 0.969374702 0.978070538 1.096465591 1.125477975 1.051759083 0.86259007 0.911556416 1.089013842 1.044360283 1.018789992 1.085421213 1.126582402 1.066518995 1.039780695 1.057737387 1.044018552 37575471 one_ring_23diox Mycobacterium gilvum PYR-GCK Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 1.230475266 1.204009339 1.22444906 1.238900683 1.239801191 1.213196896 1.238959497 1.248255861 1.229524395 1.215252397 1.22192618 1.218548662 1.212500174 1.170375484 1.162668051 1.186109814 1.213720404 1.205047975 338973617 chnb Bradyrhizobiaceae bacterium SG-6C Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae; 1.222241729 1.162790886 1.20793217 1.220475481 1.196122893 1.201094886 1.21174024 1.212251551 1.217952736 1.177114117 1.175299673 1.203881762 1.169359001 1.129901582 1.150012048 1.178618394 1.250240037 1.140955575 239988535 xylanase Streptomyces roseosporus NRRL 11379 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces filamentosus; 1.189981032 1.209335262 1.138308405 1.188011168 1.097337494 1.19728332 1.156048218 1.159132906 1.166393807 1.162465009 1.121793593 1.127661567 1.129783628 1.117037964 1.057229314 1.114040859 1.174201566 1.213893143 308097641 phenol_oxidase Polyporales sp. 2 ZY-2010 Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales; 1.024670689 1.025464127 0.950514292 1.041061032 0.991099232 1.017522762 0.933988742 0.949635958 0.976300305 1.002540322 0.974056941 0.989299821 0.945718342 0.970600818 0.915749887 0.966866075 1.021354331 1.005592739 357939290 mer Burkholderia sp. YI23 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 0.956361094 0.883270348 0.922385828 0.948911068 0.914649838 0.93916528 0.968402806 0.95144353 0.929212222 0.879831584 0.897175292 0.904263152 0.9286661 0.849762148 0.878663188 0.868999982 0.941124309 0.906223104 325261134 dsra Clostridium sp. D5 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium; 1.032740024 1.116747479 1.104961108 1.107617907 1.124768181 1.08133202 1.085768828 1.085656586 1.051533078 1.059846021 1.082371938 1.107695445 1.061264933 1.045277944 1.04469208 1.073271572 1.082505681 1.072417002 154686168 xyla Bacillus amyloliquefaciens FZB42 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus amyloliquefaciens; 0.881195821 0.903758318 0.884640481 0.881595906 0.86901684 0.87514163 0.942553803 0.916168267 0.848593398 0.945233434 0.945972861 0.881313784 0.846466486 0.899360574 0.888537236 0.901549419 0.899221637 0.949563537 379990843 dsrB uncultured bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.353936482 1.346928621 1.306994238 1.339116302 1.311796861 1.36836786 1.322482303 1.321622736 1.315613058 1.303082894 1.328439546 1.31679266 1.304560028 1.28406677 1.301393475 1.315065279 1.357884056 1.29874097 310801488 rgl Glomerella graminicola M1.001 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Glomerellaceae;genus:Colletotrichum;species:Colletotrichum graminicola; 0.888106909 1.005999368 0.934173571 0.908417863 0.929118451 0.922315288 0.834149796 0.910812812 0.904386969 0.874604204 0.980122656 0.906300441 0.867781579 0.851428437 0.821095402 0.844059736 0.916291474 0.912085302 392287470 amyA Frankia sp. QA3 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 1.120300302 1.114840935 1.131151735 1.093007257 1.111300706 1.15974597 1.118158056 1.116333478 1.086024229 1.115108845 1.104815343 1.07784479 1.093722773 1.099970839 1.070546921 1.082399291 1.133333859 1.133807805 256375929 xyla Actinosynnema mirum DSM 43827 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Actinosynnema;species:Actinosynnema mirum; 1.066158561 1.034161186 1.028223741 1.02831656 1.001706899 1.043754113 0.997054152 1.031118091 1.037604356 1.007411374 1.010196914 1.014615225 0.989515331 1.010415546 0.98002473 1.003670315 1.011223897 1.024611538 118697686 catechol Burkholderia ambifaria MC40-6 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ambifaria; 1.119557297 1.121677785 1.139909539 1.093090615 1.112023664 1.138750988 1.097802775 1.123024695 1.119079451 1.109897697 1.112269787 1.099202817 1.102470111 1.16317793 1.147677893 1.113831291 1.123468601 1.138250386 323365742 nifh uncultured microorganism Nitrogen Nitrogen fixation NA 1.074163853 1.063262703 0.932513631 0.991621173 0.954819852 0.957537284 0.909303021 1.027549066 0.983750301 0.933618233 0.895302858 0.977328015 0.93089624 0.925311937 0.911313896 0.920685429 0.982943315 0.953100776 83318864 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.826533554 0.846267763 0.81131301 0.866375249 0.838621832 0.81040883 0.915291939 0.893192084 0.844981028 0.847471896 342810420 chitinase Vibrio splendidus ATCC 33789 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio splendidus; 0.882343889 0.86238464 0.845833439 0.913050886 0.834672347 0.871895831 0.822999572 0.868128593 0.888748103 0.843209242 0.811662238 0.853409891 0.823812777 0.86523707 0.855275045 0.86018782 0.85242583 255319661 GAPDH_Calvin Acinetobacter radioresistens SK82 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter radioresistens; 0.793255416 0.826830633 0.827850315 0.81834999 0.805230059 0.834714474 0.843817587 0.831835732 0.871454847 0.820270091 0.806984885 0.80895438 0.825832764 226908019 ppx Citrobacter sp. 30_2 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter; 0.939447133 0.955394999 0.950899741 0.982680099 1.002928802 0.950116963 0.914690687 0.871764671 1.007285509 1.008257713 0.910397523 0.990569946 1.008052972 0.996600081 0.92681398 0.988868097 0.933343334 1.044137553 254488610 GAPDH_Calvin Roseobacter sp. GAI101 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 0.877420538 0.935949188 0.890339378 0.97920036 0.880672333 0.929651485 0.881512781 0.887522284 0.892419443 0.86735579 0.816149151 0.884749985 0.80402686 0.847852344 0.850990145 0.824994515 0.904494093 0.940370654 308057117 nasa Pantoea vagans C9-1 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea;species:Pantoea vagans; 0.858021378 0.859164838 0.856373567 0.827243085 0.80605998 0.829447037 0.786955804 0.829340718 0.868237605 0.868086787 392101440 bphd Mycobacterium abscessus 5S-0817 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium abscessus; 0.817724617 0.841253197 0.840890539 0.886680846 0.861941125 0.86607683 0.842124263 0.864589434 0.791943861 0.805364557 0.845640198 0.840671252 21106440 vana Xanthomonas axonopodis pv. citri str. 306 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas axonopodis; 1.289883035 1.273731682 1.230528017 1.27702694 1.231558053 1.270040578 1.219477955 1.244714153 1.236183684 1.237009508 1.236374625 1.263079311 1.231478133 1.214959301 1.212565315 1.239679308 1.279154552 1.227287588 73537515 vgb Ralstonia eutropha JMP134 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 0.811546964 0.834890924 0.809826124 0.862533251 0.792655351 0.839831486 0.839458106 356478533 cutinase Mycobacterium thermoresistibile ATCC 19527 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium thermoresistibile; 1.027740328 1.035692332 0.949727106 1.000280802 0.93342093 0.993231565 0.971456351 0.996611621 0.967932672 1.016024833 0.92801493 0.948448067 0.923242376 0.988351919 0.92522302 0.922306732 1.01665262 1.040529572 189201571 alpha_galactosidase_fungi Pyrenophora tritici-repentis Pt-1C-BFP Carbon Cycling Carbon degradation Other superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 0.930357385 0.853451748 0.92311245 0.903795586 0.9333957 0.880658409 0.868183903 0.84957858 0.896350312 0.822951159 0.830033855 0.835706193 0.856701106 0.836452578 0.826767785 0.924263784 0.912437583 83845876 ppx Sulfitobacter sp. EE-36 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 1.056995822 1.106931211 1.111619555 1.081921501 1.077588955 1.072381323 1.055614225 1.078654752 1.084534863 1.040307473 1.078266308 1.081269297 1.067376286 1.033056275 1.031469973 1.021218854 1.100739153 1.041351423 378594350 ppx Nocardia brasiliensis ATCC 700358 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia brasiliensis; 1.11246241 1.129830323 1.137673344 1.11924925 1.139687301 1.175246425 1.12987049 1.140226865 1.09112157 1.135058247 1.151462988 1.130882003 1.093264461 1.101561358 1.059028276 1.06884014 1.115061578 1.141357435 85696725 TIM Nitrobacter sp. Nb-311A Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter; 0.996913139 0.994743666 0.983448676 0.977236706 0.984342312 0.935783324 0.966046513 0.990599007 0.976844743 0.936164714 1.006279085 0.97429869 0.947023899 0.911316786 0.901796566 0.907326643 0.966061497 0.95741063 88702645 nosz uncultured soil bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.881846032 0.977071715 0.919883115 0.904716538 0.910768749 0.901049239 0.885289347 0.844728126 0.938893274 0.92085357 0.912802012 0.93209001 0.891128748 0.926556287 0.876969398 0.883351158 0.875469703 0.910471703 46448394 terc Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio vulgaris; 0.891065865 0.922271872 0.899934423 0.974963609 0.96477313 0.913961151 0.934523536 0.882315387 0.89467885 0.952369151 0.962531005 0.932538049 0.925012572 0.893448047 0.886704934 0.912270048 0.914300018 0.934961402 84503025 TIM Oceanicola batsensis HTCC2597 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola batsensis; 1.243967396 1.221774256 1.202467001 1.219246226 1.185406691 1.209108732 1.195840187 1.195760937 1.196828348 1.176217659 1.199646862 1.201208208 1.172110554 1.161455543 1.179875957 1.205862233 1.225556418 1.192955218 253576978 ara Paenibacillus sp. oral taxon 786 str. D14 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus sp. oral taxon 786; 0.765521643 0.82843511 324114336 pme Escherichia fergusonii B253 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia fergusonii; 1.049833534 1.018086163 0.96249919 1.026536544 1.041632291 1.02217079 0.989212901 0.972140139 1.007986499 0.98790858 0.983565048 1.009213139 0.992463275 1.014889904 0.955302664 0.987580648 1.038988697 1.016526758 145221680 amyA Mycobacterium gilvum PYR-GCK Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 0.856634735 0.942944338 0.873526693 0.840414333 0.928326896 0.886876117 0.844118367 0.813877914 0.918429952 0.898500012 0.927640836 0.841932716 0.843989682 0.852930052 0.810465347 0.918278317 25990802 dsra uncultured bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.125552747 1.089790068 1.085876311 1.118677544 1.07384821 1.071541645 1.056483164 1.039004944 1.105082471 1.065739026 1.080042903 1.088081396 1.018897882 1.059690646 1.019512655 1.022100879 1.0921193 1.123535824 377536448 terc Mobilicoccus pelagius NBRC 104925 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dermatophilaceae;genus:Mobilicoccus;species:Mobilicoccus pelagius; 1.300020412 1.266946251 1.270752745 1.257861208 1.246745036 1.255477763 1.260937632 1.248860755 1.263013804 1.204775581 1.264581222 1.246380893 1.19992276 1.192476603 1.16866168 1.213826973 1.271693166 1.247861275 302855502 mannanase Volvox carteri f. nagariensis Carbon Cycling Carbon degradation Hemicellulose superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Chlorophyceae;order:Chlamydomonadales;family:Volvocaceae;genus:Volvox;species:Volvox carteri; 0.774099462 0.802699642 0.838705439 0.807857879 0.77255639 0.789715866 308212919 alkb uncultured bacterium Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria; 0.957969089 0.933472884 0.918428957 0.962811071 0.963740604 0.922945895 0.98725235 0.922208348 0.990135053 0.929445322 0.933802128 0.960587991 0.920713564 0.89333044 0.838115715 0.907283797 0.939079587 0.991831824 2627153 xylg Acinetobacter sp. YAA Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 0.935934771 0.944912083 0.905253469 0.967151187 0.845626512 0.946854903 0.901054339 0.941753789 0.926343827 0.949390773 0.886170439 0.895851034 0.862978329 0.891139507 0.827092656 0.865939332 0.888140408 0.925013359 227329543 cmci Pectobacterium carotovorum subsp. carotovorum WPP14 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium carotovorum; 0.853829805 0.793738102 0.865869733 325964873 rgl Arthrobacter phenanthrenivorans Sphe3 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter phenanthrenivorans; 0.836110427 0.806977235 0.864208915 0.852496569 0.879010577 0.871220626 0.80818817 0.822739386 0.862325385 0.786908958 0.828248991 0.867181963 0.872088903 0.782565045 259502702 ppk Lactobacillus antri DSM 16041 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus antri; 1.354446738 1.331849938 1.356739698 1.328544696 1.327040143 1.367251737 1.296526669 1.317833615 1.332871833 1.347020527 1.333515733 1.339740678 1.314871813 1.305860172 1.335613666 1.310215537 1.35027922 1.333322811 295895043 sqr Mycobacterium parascrofulaceum ATCC BAA-614 Sulfur Sulfide Oxidation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium parascrofulaceum; 1.273484982 1.304147499 1.253829433 1.265447399 1.255549992 1.294984712 1.239283399 1.225827697 1.242970504 1.2699677 1.260581214 1.281358111 1.235923002 1.246772839 1.223288333 1.245428698 1.253393937 1.26784151 255300300 AcnA Campylobacter showae RM3277 Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter showae; 1.150199202 1.10073496 1.083768268 1.153394112 1.091845241 1.101178065 1.102086132 1.154175189 1.134084191 1.101720683 1.071443524 1.117611184 1.055370534 1.042851339 1.055217463 1.105300548 1.12616121 1.114445231 300718735 atza Erwinia billingiae Eb661 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia billingiae; 0.98802028 1.022484749 0.935304406 0.976900682 0.962095791 0.95727202 0.927940036 0.932099444 1.009328523 0.955604196 0.978002042 0.980331069 0.904636008 0.92438178 0.906627372 0.917715654 0.974209027 0.994726199 76056991 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.843966699 0.859155055 0.836970091 0.808480771 0.814651667 0.815422756 0.809229119 0.844609356 0.834579 0.809373437 0.810571102 0.792985962 0.851545986 324999045 rubisco Pseudonocardia sp. P1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Pseudonocardia; 1.021639576 1.159240558 1.016626869 0.989497143 0.998733469 0.966603978 0.920877487 0.995662107 1.04883156 0.972563421 0.974455564 0.978559451 0.973055795 0.951101984 0.975732196 0.924126162 1.018199548 1.002157196 209401772 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.157983095 1.133932552 1.085547268 1.072631492 1.075690091 1.125195919 1.090206081 1.116597901 1.108067816 1.064608763 1.102386893 1.093495533 1.059173893 1.049658279 1.095884778 1.083615633 1.120894077 1.111394891 145228347 ara Carbon Cycling Carbon degradation Hemicellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 0.92254833 0.982660776 0.984543564 0.955832487 0.962083354 0.957759203 0.893979097 0.881176353 0.926442099 0.905479544 0.87858715 0.947552492 0.913158473 0.884741159 0.857502466 0.91192777 0.939962128 0.954632107 148830818 linc Erythrobacter sp. SD-21 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter; 1.082837721 1.091456404 1.1009116 1.139386141 1.148341902 1.062107175 1.126313766 1.139049737 1.141787821 1.123801467 1.136560262 1.159527529 1.071141492 1.042924188 1.075081074 1.073527855 1.13692113 1.13258402 328922826 bphF1 gamma proteobacterium IMCC3088 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 1.138505635 1.095132953 1.149664757 1.136925045 1.132032559 1.071479549 1.079568482 1.120180574 1.110644343 1.096442581 1.079854338 1.16605782 1.083213988 1.077908916 1.077798856 1.073448089 1.103177645 1.080847666 149913902 nhh Roseobacter sp. AzwK-3b Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 1.277356682 1.280350006 1.236642616 1.28170088 1.23592217 1.282452209 1.222532937 1.259251601 1.232085031 1.225571124 1.218894888 1.241654408 1.215967463 1.214404259 1.142375021 1.205920233 1.278421705 1.244692105 219996664 dsra Thioalkalivibrio sp. HL-EbGR7 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio;species:Thioalkalivibrio sulfidophilus; 0.873083443 0.946269947 0.883574019 0.904070393 0.90485334 0.832389946 0.873256206 0.878593804 0.882367449 0.910112749 0.898939119 0.88507342 0.927098652 0.929633612 0.83008212 0.872696589 0.956274176 0.899205004 27354399 SoxC Bradyrhizobium japonicum USDA 110 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium diazoefficiens; 1.209770358 1.196403852 1.176401843 1.184603817 1.163674705 1.193962804 1.179386288 1.17565842 1.154688927 1.169863939 1.169729172 1.181632573 1.131195168 1.122285982 1.12787646 1.144863389 1.181721828 1.182960784 365879094 ppk Bradyrhizobium sp. ORS 375 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 1.315984059 1.274404504 1.254677054 1.28604105 1.269592998 1.284097905 1.252453629 1.269201317 1.261017013 1.250769736 1.266683283 1.269013484 1.253211993 1.234187999 1.262768887 1.270787125 1.271491788 1.261437328 392848127 xyla Rhizobium leguminosarum bv. viciae USDA 2370 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 0.78725478 0.791716923 0.785202876 0.809678258 0.815075504 0.847038553 0.82548321 0.818749197 0.838134688 0.799930808 0.781148638 0.824477741 0.83416615 0.852131639 109452560 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.22542627 1.164530497 1.178760238 1.239089829 1.190550682 1.220323377 1.206379928 1.235531117 1.214762834 1.177607571 1.197760101 1.191547955 1.190981851 1.180320334 1.177210832 1.206191176 1.214109436 1.171128261 6594308 xylanase Penicillium sp. 40 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium; 0.888807653 0.939573869 0.89693175 0.899913444 0.87480488 0.899738408 0.906987751 0.85561104 0.902315488 0.9789292 0.889337317 0.886387747 0.878490238 0.85634563 0.861507304 0.847051505 0.874803406 0.916748022 4586274 one_ring_23diox Alcaligenes faecalis Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Alcaligenes; 0.890074804 1.033231778 0.900569944 1.02396762 1.087472143 1.000522608 0.869456625 0.904703347 1.101904811 1.123578555 0.963408055 1.013049449 1.197727335 1.132066735 0.941026312 0.857650134 0.905300801 288895441 pgk Allochromatium vinosum DSM 180 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Allochromatium;species:Allochromatium vinosum; 1.169888185 1.106995001 1.11762392 1.09493693 1.127129468 1.174196649 1.111223666 1.089863864 1.122443506 1.119073633 1.127945847 1.119576735 1.029911148 1.078655528 0.985951915 1.063446161 1.151026515 1.063771019 145236419 lactase_fungi Aspergillus niger Carbon Cycling Carbon degradation Lactose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 0.811543226 0.808739951 0.849965092 0.844087056 0.826184436 0.823884414 0.83410088 0.833810737 0.853279193 0.832838345 0.816714465 0.828389019 0.810014735 0.856702786 2808782 endochitinase Streptomyces coelicolor A3(2) Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 0.889079521 0.920696108 0.827359571 0.885352697 0.839764881 0.841119744 0.838915574 0.875122492 0.890097868 0.86584149 0.813298895 0.849063574 0.834819152 0.835030904 0.866005028 0.973769187 0.911843115 26278706 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.816829929 0.881429337 0.847380463 0.838490569 0.84385533 0.813105 0.834937495 0.897949964 393771237 arsc Novosphingobium sp. Rr 2-17 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 0.886980703 0.839634575 0.898914369 0.862928084 0.813611778 0.811371265 0.836771834 0.900265124 0.86292686 0.8435047 0.821301925 0.807118928 0.824369209 0.894913128 0.879116326 357008633 amie Paenibacillus elgii B69 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus elgii; 0.794001872 0.791744185 389811933 ppx Rhodanobacter thiooxydans LCS2 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Rhodanobacter;species:Rhodanobacter thiooxydans; 0.979529685 0.975265417 0.960672693 0.967839832 0.935088052 0.962136679 0.927960086 0.945148519 0.959860604 0.95801767 0.973624328 0.972840432 0.949280159 0.951137942 0.907470273 0.965378925 0.966581237 0.975995304 408375074 linb Alcanivorax hongdengensis A-11-3 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax;species:Alcanivorax hongdengensis; 1.25639787 1.234481436 1.220746426 1.23528666 1.223340641 1.287772398 1.236645499 1.252689084 1.192770221 1.236016829 1.233929628 1.213067366 1.226318853 1.207126873 1.165886717 1.178387295 1.259244696 1.197000321 381380906 terc Rubrivivax gelatinosus IL144 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Rubrivivax;species:Rubrivivax gelatinosus; 0.865625814 0.861127971 0.833094328 0.856759027 0.828932552 0.82757665 0.848676244 0.80715743 0.838533889 0.843479437 0.868381466 0.84694647 357203825 RgaE Paenibacillus terrae HPL-003 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus terrae; 1.068195502 1.10147034 1.080465513 1.12209607 1.112868325 1.097796714 1.118930898 1.10613384 1.08073413 1.111063121 1.109296286 1.105835476 1.067158138 1.093242627 1.031413628 1.082926747 1.056431636 1.079077815 116743242 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.879433565 0.94793289 0.819653399 0.899042974 0.809900944 0.871580744 0.840485796 0.843815792 0.910461091 0.891919157 0.832404902 0.828225322 0.805087736 0.853707786 0.902680134 0.940263675 34017100 dsra uncultured bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.94980121 0.800000988 0.895683869 0.908215708 0.880716221 0.907648528 0.79445599 0.917801634 0.867695107 0.900777399 0.927415925 0.789535337 0.819262897 26278814 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.896368324 0.861146127 0.858252931 0.856598359 0.797078896 0.851059182 0.861179011 0.825185153 0.857801024 0.851023128 0.830627969 0.889659587 0.819303916 0.855874942 0.819653945 0.847419727 0.88406485 410687260 proO Sphingobium fuliginis ATCC 27551 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium;species:Sphingobium fuliginis; 0.930539795 0.918802247 0.933897264 0.925206831 0.877233236 0.928706825 0.898327278 0.944263018 0.947018957 0.927007717 0.913036458 0.877913878 0.888576664 0.872457385 0.832524503 0.850138064 0.90664143 0.937592653 190687091 GAPDH_Calvin Cellvibrio japonicus Ueda107 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio;species:Cellvibrio japonicus; 0.936363236 0.979817641 0.861871883 0.863517061 0.861982106 0.835068631 0.827846144 295106727 ppx Gordonibacter pamelaeae 7-10-1-b Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Gordonibacter;species:Gordonibacter pamelaeae; 1.157751899 1.172010158 1.138923923 1.133567656 1.132562543 1.17702113 1.144261598 1.130029407 1.13034797 1.13323624 1.146122632 1.135792323 1.083618464 1.088133528 1.003077411 1.093023602 1.093069633 1.081410519 239582633 phospholipase_B_fungi Zygosaccharomyces rouxii virulence degradation NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Saccharomycetaceae;genus:Zygosaccharomyces; 0.821956807 0.833172707 0.898523279 0.810921271 0.848916612 0.79937384 0.874960345 0.864500177 0.839407917 0.829507607 0.855581664 0.854782429 0.81709276 0.859008695 0.854418381 0.826172018 311229650 cysJ Frankia sp. EuI1c Sulfur Reduction NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 1.192353794 1.21718047 1.172408842 1.204868111 1.187841293 1.219149052 1.158468194 1.171576406 1.175874568 1.194591789 1.16328422 1.178293196 1.188507412 1.169484595 1.147778335 1.179905141 1.209178357 1.19554405 45272475 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.977853863 0.87934598 0.945039042 0.977697909 0.918696972 0.908248575 0.92085779 0.941322905 0.989093724 0.989137427 0.945457613 0.979493507 0.921848333 0.88549203 0.898024385 0.924834672 0.993144925 0.95666502 13474199 xyla Mesorhizobium loti MAFF303099 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 1.11473684 1.144675579 1.159222024 1.116425986 1.07195607 1.128912212 1.076194366 1.112165063 1.142533186 1.115377887 1.132191277 1.128244149 1.091529051 1.106384228 1.033123137 1.111122824 1.099249458 1.152973944 334115805 Sir Acidithiobacillus ferrivorans SS3 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus ferrivorans; 0.977865671 0.912828439 0.879182778 0.972510996 0.836711473 0.957538595 0.885286246 0.964499145 0.944591665 0.927320776 0.888286005 0.941451883 0.876111061 0.903280619 0.829365754 0.861716326 0.939057566 0.949639686 307947146 acetylglucosaminidase Roseibium sp. TrichSKD4 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseibium; 1.207991786 1.15868293 1.156041845 1.14874862 1.124817674 1.165122755 1.088211672 1.114924556 1.090805756 1.113981872 1.125606238 1.110086639 1.102808135 1.096152875 1.105005409 1.117810517 1.232015172 1.134255982 256392879 amyA Catenulispora acidiphila DSM 44928 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 1.159005994 1.146794672 1.18429602 1.183496561 1.146670346 1.191244451 1.151460719 1.178804201 1.17416637 1.16561527 1.152970406 1.176359895 1.10831663 1.140130618 1.137830156 1.134478596 1.19060349 1.152146512 325660425 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.906535401 0.892535534 0.894685577 0.90770042 0.912179846 0.826339157 0.861827886 0.84524665 0.917093568 0.886511722 0.862762385 0.930181215 0.874343559 0.864689034 0.906486687 0.914713674 0.858985481 336180146 poba Frankia symbiont of Datisca glomerata Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 0.996251514 1.039666304 0.999227665 0.999822778 1.008285968 1.018229418 0.988802753 0.960766372 0.954814733 0.997973566 0.992766939 1.024116283 0.978216305 0.998146368 0.957765182 0.989332809 1.004394402 1.018213705 40362783 nosz uncultured soil bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.777928359 0.837575943 289185211 pula Clostridiales genomosp. BVAB3 str. UPII9-5 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;species:Clostridiales genomosp. BVAB3; 1.070381438 1.057623574 1.062072826 1.063468754 1.080242349 1.053425361 1.026858284 0.980998227 1.029013865 1.028905314 1.02414535 1.008224558 1.012785407 0.997491443 0.950643752 0.974323065 1.073696602 1.053752648 295977453 acetylglucosaminidase Gluconacetobacter hansenii ATCC 23769 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter hansenii; 0.867534174 0.868027312 0.809686872 0.848427898 0.814440433 0.855216961 0.83483101 0.861349056 0.846926449 0.8537304 0.890356228 171060286 ppx Leptothrix cholodnii SP-6 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Leptothrix;species:Leptothrix cholodnii; 1.298001857 1.30153963 1.244010772 1.261930777 1.240967556 1.308331817 1.239368262 1.26826432 1.245181086 1.256564475 1.228841665 1.248692991 1.225226548 1.241325287 1.217664577 1.274482559 1.27114752 1.289154884 148628300 one_ring_23diox uncultured bacterium Organic Remediation Aromatics Other aromatics superkingdom:Bacteria; 0.787483166 0.855150658 0.845417488 0.816367613 0.85016969 0.841790678 0.918911789 0.818084324 0.848745398 22255726 nifh Mesorhizobium sp. 128a Nitrogen Nitrogen fixation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium; 0.974601984 0.990282763 1.013456772 1.019212396 0.961267002 0.983816313 0.987350721 1.003161056 0.900441971 0.968699912 0.985711059 0.964656123 0.950299268 0.921465588 0.941003012 0.944823667 1.006158299 0.976671784 13423939 vdh Caulobacter crescentus CB15 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter vibrioides; 1.011326186 0.99812337 0.986340252 0.931452716 0.904130784 0.96399604 0.930124901 0.942124159 0.98413325 0.979143136 0.931813797 0.935800955 0.955004662 0.943650694 0.927343896 0.90226062 1.003007534 1.045085376 218267437 atza Clostridium hylemonae DSM 15053 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hylemonae; 0.892697744 0.864752417 0.921613205 0.902171392 0.892281008 0.876110062 0.879178031 0.897933921 0.902062815 0.907179672 0.883378872 0.888091268 0.930305375 0.887021134 0.942264453 0.882289349 0.94888004 0.940598113 261208528 dehh109 Paracoccus sp. DEH99 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus; 1.075266079 1.055589053 1.029632275 1.049542666 1.02420349 1.035639371 1.006186909 1.067443001 1.047825994 1.059620263 1.034736847 1.085441267 1.003758715 1.049617493 0.97032988 0.997528372 1.031418965 1.037921989 399990254 bphd Mycobacterium smegmatis str. MC2 155 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 0.995994421 0.827865164 0.789198608 0.843054277 46307904 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.903877633 0.7836351 0.861729496 0.82556993 0.841857459 0.821284045 0.836443829 0.855473149 0.823783196 0.78449589 0.836023209 0.813490746 0.811994602 336430237 cda Lachnospiraceae bacterium 3_1_57FAA_CT1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae; 0.810877718 0.837160523 0.828217458 0.817761961 0.798034816 0.774948352 160936847 ppx Clostridium bolteae ATCC BAA-613 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium bolteae; 0.831229492 0.877056277 0.882529038 0.92345245 0.871919268 0.913818909 0.870213396 0.817391034 0.869383338 0.804724784 0.827169556 0.833928215 0.86463313 0.843276601 0.79710903 0.877728841 0.831457085 85080647 exoglucanase Neurospora crassa OR74A Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Neurospora;species:Neurospora crassa; 0.811024088 0.82097623 0.83813432 0.842256784 0.82405356 0.851836569 0.850627445 0.841407598 0.806146096 0.852543384 0.861157942 0.828521019 154695750 protease_aspartate_fungi Sclerotinia sclerotiorum 1980 Carbon Cycling Carbon degradation protein superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Sclerotinia;species:Sclerotinia sclerotiorum; 0.841172698 0.925399097 0.894258263 0.974852508 0.960446458 0.864151503 0.896798302 0.860407116 0.907194114 0.908853981 0.901755872 0.898994817 0.915280549 0.871358156 0.84877065 0.914186315 0.831886551 0.86548909 77920456 nrfa Pelobacter carbinolicus DSM 2380 Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Pelobacteraceae;genus:Pelobacter;species:Pelobacter carbinolicus; 0.996077885 0.990610463 1.000561855 0.97990105 0.960475252 1.018046901 0.99930471 0.973271055 0.960108868 0.987472736 0.960020687 0.978156445 0.964226401 0.93281875 0.973544959 0.938847165 0.979537794 161379828 SoxC Oceanibulbus indolifex HEL-45 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanibulbus;species:Oceanibulbus indolifex; 0.949431411 0.924512818 0.896718623 0.913733618 0.920196011 0.906870154 0.839361313 0.867920401 0.941733154 0.913871211 0.863680412 0.971311066 0.858424487 0.879474171 0.847770521 0.884716143 0.950024682 0.920288993 184192923 pchcf Burkholderia phymatum STM815 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 1.158689031 1.142666808 1.083355001 1.090142416 1.195799292 1.090994526 1.057832833 1.082410026 1.124361744 1.075732097 1.056044218 1.091703133 1.052404554 1.048734581 1.032584994 1.084534185 1.107284767 1.106874128 296264346 tktA Roseomonas cervicalis ATCC 49957 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Roseomonas;species:Roseomonas cervicalis; 1.033160561 1.008197609 1.022288047 1.006824715 1.000125734 1.018010209 0.972062896 1.00015634 1.044148945 0.937272196 0.996033827 0.996396413 0.929806762 0.945137092 0.937198487 0.970905261 0.988441882 0.948349591 154155295 cysI Parvibaculum lavamentivorans DS-1 Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhodobiaceae;genus:Parvibaculum;species:Parvibaculum lavamentivorans; 1.07491448 1.039835176 1.074234507 1.062179577 1.081194837 1.090355969 1.080411595 1.078652874 1.062017505 1.052516391 1.046244053 1.058012515 1.041457803 0.996413432 1.01817348 1.013592662 1.055648948 1.039363349 12667670 dsra uncultured sulfate-reducing bacterium UMTRAdsr648-20 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 0.955641686 0.862994352 0.945541639 0.945534097 0.856768173 0.834376321 0.871450839 0.931653172 0.936277137 0.884947806 0.895403758 0.927885114 0.898972084 0.862960778 0.856606247 0.893907999 0.926793033 0.876085628 223029707 hsp90_Stramenopiles Glossomastix chrysoplasta Other Phylogenetic NA superkingdom:Eukaryota;phylum:Pinguiophyceae;order:Pinguiochrysidales;family:Pinguiochrysidaceae;genus:Glossomastix; 0.946633567 0.913266601 0.928628867 0.950152433 0.897351147 0.910676949 0.905720304 0.908480878 0.980267405 0.959169227 0.973986269 0.929261621 0.935074255 0.942022141 0.885483847 0.904086223 0.933098937 0.925382821 378803704 phdk Mycobacterium intracellulare MOTT-02 Organic Remediation Polycyclic aromatics NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium intracellulare; 0.972446533 0.980736623 0.987267202 0.993694654 0.95472654 0.952916309 0.947106613 1.103131813 0.990474063 0.976140944 0.982325274 1.002995554 0.95612558 0.978851453 0.912568001 0.953268879 0.977804145 0.959967603 325261101 b_lactamase Clostridium sp. D5 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium; 1.00690162 1.038385112 1.006481262 1.019095127 1.053073621 1.033129036 1.009521903 1.010108623 1.017317849 1.002973687 0.988608665 1.008831018 1.004518095 1.00964365 1.04507928 1.035660842 1.05502438 1.037959799 87282704 FBPase Synechococcus sp. WH 5701 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 0.885888779 0.909463304 0.822465182 0.925917022 0.86011921 0.882351622 0.853205047 0.860112501 0.862610589 0.906397624 0.871181038 0.876048348 0.86867609 0.839704772 34017202 dsrB uncultured bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.769596533 0.866148342 0.820942973 0.830308406 0.860687849 0.836752504 0.817740493 0.8205059 0.804414912 0.831406554 161167869 aln Sorangium cellulosum 'So ce 56' Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 1.161004601 1.094516635 1.077217007 1.136874056 1.146553564 1.09886501 1.088994642 1.128830591 1.166743328 1.111989642 1.104645208 1.153434361 1.100946195 1.056288217 1.052742145 1.1035698 1.106317466 1.083241025 365844513 CsoS1_CcmK Flavonifractor plautii ATCC 29863 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;species:Flavonifractor plautii; 1.097223627 1.054458915 1.033788477 1.057762736 1.095700933 1.085985999 1.031510217 1.209827978 1.038919865 1.01694318 1.035327311 1.090448838 1.034741762 1.021475221 1.043685317 1.036257106 1.072037916 1.032684601 87284694 amyA Synechococcus sp. WH 5701 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 0.920796601 0.931228244 0.942945263 0.963237256 0.856754521 0.921296191 0.86118681 0.921969098 0.907067832 0.907809605 0.907030166 0.894862123 0.891652304 0.919868893 0.860968432 0.882439867 0.938408096 0.888924944 188520791 nbac Xanthomonas oryzae pv. oryzae PXO99A Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas oryzae; 1.030374074 1.013893921 0.991222392 1.022185612 1.000863364 1.005751842 0.98007521 0.990803886 0.977274712 1.016067792 1.000870494 1.017822656 0.968317078 0.953840407 0.949063088 0.986086099 1.026271756 1.021813838 383702536 cysI Rheinheimera nanhaiensis E407-8 Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Rheinheimera;species:Rheinheimera nanhaiensis; 1.038701621 0.915405383 0.886314725 0.90520373 0.927466639 0.927378354 0.895686054 0.972150621 0.932444949 0.87510483 0.891034439 0.88758265 0.876610147 0.943725941 0.862939945 0.901628325 0.883810162 0.958823148 167842053 FBP_aldolase Burkholderia thailandensis MSMB43 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia thailandensis; 0.934086463 0.922423671 0.818615043 0.872419409 0.887720788 0.912997685 0.837932448 0.887488996 0.891903921 0.861475636 0.908715694 0.839188785 0.862022126 0.869136531 0.89092325 0.880002558 167651849 fthfs Anaerostipes caccae DSM 14662 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Anaerostipes;species:Anaerostipes caccae; 0.80257307 0.807533885 0.837586667 0.804512374 0.833190116 0.81958469 146396053 arra Geobacter uraniireducens Rf4 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter uraniireducens; 1.002771358 1.031576628 0.937989086 1.040754735 0.977195587 0.983514013 0.914509965 0.975597901 1.033870376 0.927075956 0.915468292 0.983497531 0.950794268 0.915042742 0.922188441 0.920924932 1.022322061 0.997170705 88643126 dsrB uncultured prokaryote Sulfur sulfite reduction NA 1.002551511 0.878920981 0.957240749 0.953249305 1.025088537 1.003870043 0.965309472 0.829470576 0.96930868 0.92676276 0.963587819 0.985195118 0.990219902 1.02598868 0.938832883 0.990556782 0.948098764 52081406 pectinase (pectate_lyase) Bacillus licheniformis ATCC 14580 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus licheniformis; 0.887213097 0.872063549 0.851170678 0.922343868 0.86482304 0.799670869 0.863956085 0.85665322 0.909782624 0.849215747 0.869931756 0.87036376 0.815535926 0.796456585 0.8139126 0.911893486 0.82013396 300785821 endoglucanase Amycolatopsis mediterranei U32 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 0.976873209 0.972996773 0.965924496 0.96719339 0.916161435 0.947847791 0.94581823 0.934406061 0.922827386 0.906239735 0.937599717 0.964012962 0.919840069 0.932602618 0.90706823 0.918571625 0.944871973 0.935420059 297630086 arsc Xenorhabdus nematophila ATCC 19061 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Xenorhabdus;species:Xenorhabdus nematophila; 1.208444912 1.13769721 1.164981995 1.193406342 1.182818813 1.17344503 1.183567881 1.212250406 1.167328213 1.138985886 1.17647334 1.173072603 1.171054816 1.106251448 1.101650204 1.127777935 1.199313207 1.116766948 151422300 frdA_rTCA Nitratiruptor sp. SB155-2 Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;genus:Nitratiruptor; 1.008937419 0.960475466 0.999964765 0.983695256 1.02512245 1.019979183 1.039618037 1.005159701 1.008205687 1.005162518 1.019178438 0.984509207 1.016167048 0.984253882 0.949531452 0.958726709 1.011486931 0.987093886 71395672 one_ring_23diox uncultured bacterium Organic Remediation Aromatics Other aromatics superkingdom:Bacteria; 0.770982713 0.800583348 0.750960942 0.797551429 396926125 onr Rhodococcus sp. JVH1 Organic Remediation Others NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 0.980171934 0.976461251 0.938487842 1.033222746 0.905865886 0.96534726 0.888630763 0.915980487 0.963466368 0.961146906 0.935087537 0.92678199 0.86150235 0.968630897 0.912144876 0.91726768 0.979352361 1.019863028 56708985 hao Silicibacter pomeroyi DSS-3 Nitrogen Nitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 0.786727773 0.808918969 0.841538544 0.818390035 0.816096033 0.800271038 0.830462161 0.797391094 0.818717268 83953700 FBP_aldolase Sulfitobacter sp. NAS-14.1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 0.892803096 0.781708342 145223764 cutinase Mycobacterium gilvum PYR-GCK Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 0.91043551 0.873086008 0.878709042 0.963090729 0.855988567 0.867411598 0.855860694 1.006970926 0.914324335 0.889446906 0.876509502 0.906163828 0.865072276 0.844331716 0.862489958 0.87810555 0.892587579 0.858468982 157084650 cueo Citrobacter koseri ATCC BAA-895 Metal Homeostasis Copper Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter koseri; 0.799658545 0.8405987 0.856766627 0.850289407 0.822738024 0.804810641 0.84452902 0.81408619 0.796634654 0.839023009 0.824762729 0.83405107 0.813624134 0.83962024 0.848048537 0.828495213 0.848215538 218659620 catechol Rhizobium etli IE4771 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 1.258778391 1.206809852 1.207008493 1.234213283 1.203675886 1.244593359 1.19626919 1.220157116 1.22026346 1.214272196 1.209259673 1.216100211 1.185784291 1.201034315 1.187526666 1.22141784 1.24371947 1.209309699 109455731 vana Roseobacter denitrificans OCh 114 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter denitrificans; 1.043995043 1.118759725 1.019976742 1.010966376 1.043246854 1.153695149 1.001371423 0.983280956 1.021855663 1.060767666 1.091272879 1.046158623 0.960263786 0.98842531 0.929532914 1.022081287 1.148345389 1.078314304 332377316 fthfs uncultured bacterium Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria; 1.120118115 1.056267413 1.067654258 1.177489944 1.059283306 1.090466175 1.06039904 1.109416065 1.093410528 1.067355171 1.075704877 1.092161093 1.04087881 1.028031298 1.011493383 1.043071648 1.087656446 1.032908211 381160122 arylest Thiorhodovibrio sp. 970 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiorhodovibrio; 1.077031611 1.017673576 1.059392714 0.99223962 1.025612625 0.977420961 0.993976115 0.982765092 1.039739864 1.077623615 1.146689701 1.034169744 1.054003883 0.992619329 1.027045764 0.971339649 1.064586138 1.108231218 312963550 alginase Pseudomonas fluorescens WH6 Carbon Cycling Carbon degradation Alginate superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 0.891675525 0.926920493 0.818133855 0.904056168 0.886816515 0.865711968 0.86369272 0.826338907 0.871884521 0.940401993 0.861523993 0.793576512 0.939343535 0.849622037 0.883916739 0.896325152 0.88014934 0.942144154 297565727 terc Meiothermus silvanus DSM 9946 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Meiothermus;species:Meiothermus silvanus; 0.99218848 1.007563901 0.930875865 0.980717163 0.89163943 1.037699358 0.949352689 0.938342352 0.96263418 1.015670456 0.929087005 0.952983217 0.864011094 1.089542046 0.867276909 0.951966281 1.094888947 1.021970978 110816769 tehb Rhodococcus jostii RHA1 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 1.107209916 1.08950677 1.094423098 1.06241676 1.091448949 1.101299322 1.113526733 1.151266547 1.14594177 1.116087053 1.050956998 1.096685961 1.09844099 1.162963349 1.027596841 1.106834112 1.072221892 1.102477057 168199245 SoxA Methylobacterium sp. 4-46 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 1.204260673 1.193303088 1.194125206 1.219472344 1.209912626 1.19190787 1.19704135 1.211527269 1.199416141 1.191599757 1.174143081 1.169690019 1.169611725 1.121097271 1.1281548 1.152743012 1.177495765 1.180849413 71383772 nasa Synechococcus sp. UW179 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 0.785204425 0.793553795 0.830554346 0.854830367 407305380 linb Nocardia brasiliensis ATCC 700358 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia brasiliensis; 0.843419959 0.856235714 0.841613526 0.896019767 0.881455307 0.809523317 0.834877692 0.87772808 0.862196847 0.865054748 0.827556992 0.878784988 0.842014731 0.833151762 0.843546338 0.85158932 0.872949571 210631468 cellobiase Collinsella stercoris DSM 13279 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Collinsella;species:Collinsella stercoris; 0.992419211 0.970523217 0.95074592 0.986054673 0.891895697 0.961760379 0.885625282 0.955480068 0.958372815 1.077040932 0.928359851 0.911926512 0.878095782 0.915304777 0.840879707 0.91520453 1.054340937 0.959451712 298247386 mer Ktedonobacter racemifer DSM 44963 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Chloroflexi;class:Ktedonobacteria;order:Ktedonobacterales;family:Ktedonobacteraceae;genus:Ktedonobacter;species:Ktedonobacter racemifer; 0.828882807 0.831096559 0.812375746 0.767033876 0.83937541 0.78768157 0.828110384 0.819345377 0.934355036 0.861955869 0.888195112 334117336 cda Microcoleus vaginatus FGP-2 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Microcoleus;species:Microcoleus vaginatus; 0.887339189 0.818409693 0.831484064 0.928034682 0.859704986 0.804654191 0.910788795 0.878922195 0.914829544 0.863554623 0.907614414 0.905607565 0.796700656 0.834945935 0.814958299 0.911129047 182415523 mannanase Opitutus terrae PB90-1 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 0.982416553 1.027607135 0.971407909 0.977181663 0.965416968 0.972561227 0.938300082 1.022067907 0.958557401 0.968836184 0.944082108 0.99244826 0.949231489 0.954175524 0.990064221 0.952842431 0.996565089 0.985656959 147886176 phenol_oxidase uncultured bacterium Carbon Cycling Carbon degradation Lignin superkingdom:Bacteria; 1.174871833 1.129076751 1.107908876 1.168009191 1.153043073 1.125329389 1.178574307 1.145452675 1.145746639 1.108583397 1.098668197 1.123974183 1.172696617 1.083600774 1.073940095 1.109999919 1.150143172 1.12091624 400331435 linb Mycobacterium colombiense CECT 3035 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium colombiense; 0.904134435 0.830442253 0.858441705 0.791994714 0.807960849 0.833043306 315924281 amyA Pseudoramibacter alactolyticus ATCC 23263 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Eubacteriaceae;genus:Pseudoramibacter;species:Pseudoramibacter alactolyticus; 0.958220191 0.900671881 0.922926054 1.006228746 0.932213851 0.911501979 0.921722358 0.915955291 0.890154748 0.90709048 0.910333913 0.905544127 0.867021821 0.926581757 0.964038957 0.861199536 0.918862866 0.915049388 295674267 protease_serine_fungi Paracoccidioides brasiliensis Pb01 Carbon Cycling Carbon degradation protein superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;genus:Paracoccidioides;species:Paracoccidioides brasiliensis; 1.22399301 1.149998238 1.160334126 1.203849454 1.152083229 1.176350204 1.122504627 1.17933882 1.193476988 1.169808843 1.164118616 1.182224876 1.136262339 1.158823542 1.130929553 1.172113343 1.211883352 1.140276596 311218364 nhh Rhodomicrobium vannielii ATCC 17100 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Rhodomicrobium;species:Rhodomicrobium vannielii; 1.144839611 1.09391493 1.090942748 1.163796377 1.097472313 1.127263059 1.104601872 1.134500558 1.120171523 1.098369033 1.109008308 1.146850287 1.086976489 1.080426476 1.086872527 1.106611807 1.140099019 1.086009586 161167819 fosa Sorangium cellulosum 'So ce 56' Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 1.313849852 1.265573946 1.238942096 1.246031557 1.221948194 1.287128326 1.231739196 1.250414083 1.257619623 1.241174808 1.233533086 1.242790074 1.218825995 1.238979831 1.22528814 1.257909768 1.272310177 1.251502213 126237864 amyA Mycobacterium sp. JLS Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 0.910037307 0.816819106 0.844537845 0.826089721 0.848790562 0.89995331 0.828441562 0.892449702 0.869525399 0.836090953 0.848221755 0.841812484 0.866735356 255502879 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.135924407 1.14016591 1.133821853 1.104461045 1.083730611 1.098973442 1.050557534 1.100364481 1.107920974 1.134359577 1.095999157 1.162631569 1.092405823 1.078964497 1.07749235 1.070044853 1.142507522 1.134165078 336321017 xylanase Cellvibrio] gilvus ATCC 13127 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas;species:[Cellvibrio] gilvus; 0.839209367 0.87813752 0.823006445 0.877548705 0.872367187 0.861909174 0.873034274 0.815546079 0.843768326 0.849566356 0.866848661 0.813102894 0.846039158 0.823540623 169863180 phospholipase_D_fungi Coprinopsis cinerea okayama7#130 Carbon Cycling Carbon degradation Phospholipids superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 0.863072958 0.843350635 0.890619549 0.839934188 0.821375955 0.91254673 0.848606767 0.866500518 0.880586233 0.831122524 0.873282938 0.890415006 0.802679854 0.838181522 0.965865396 0.874883119 0.825203494 164455740 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 0.862935369 0.858771402 0.872755235 0.866430133 0.80022064 0.816112176 0.870638895 0.875968189 0.903762636 0.872165349 0.813782997 0.877841334 0.877708885 358238144 cutinase Gordonia amarae NBRC 15530 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia amarae; 1.399138457 1.343420329 1.338466353 1.354019782 1.334296297 1.395876722 1.295289186 1.354966453 1.331497277 1.329431475 1.331371003 1.34049677 1.315676932 1.319148826 1.314729902 1.351842053 1.370407916 1.323278269 91977216 nhh Rhodopseudomonas palustris BisB5 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 1.05806496 1.056878081 0.997009278 1.049755855 0.973483704 1.036562272 0.965474086 0.975618749 1.025187463 1.024043743 0.971288252 1.012325252 0.952597308 0.982195589 0.955174682 1.026229339 1.060374146 1.041649338 112462225 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.796629732 0.868175402 0.83955906 0.860811553 0.817311804 0.865043818 0.86997985 0.79233868 0.806076592 0.889408789 0.785988399 146308720 atzb Pseudomonas mendocina ymp Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas mendocina; 0.867885654 0.868187767 0.866371074 0.864342667 0.839381457 0.891063636 0.876750745 0.83341864 0.852021201 0.868259353 0.896799415 371445215 mcra uncultured Methanosaeta sp. Carbon Cycling Methane Methanogenesis superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosaetaceae;genus:Methanosaeta; 0.954299928 0.949900557 0.946226152 0.948940016 0.927187018 0.996593405 0.926816416 0.922898603 0.965706533 0.976965032 0.911683245 0.931516609 0.933454808 0.952334463 0.911114529 0.943741599 0.991065192 0.969821079 91700830 bphF1 Polaromonas sp. JS666 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 0.78237557 0.78940425 0.814532839 0.811216287 0.800215277 0.828056997 0.786619912 0.775330983 0.851463549 169610375 pec_Cdeg Phaeosphaeria nodorum SN15 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Phaeosphaeriaceae;genus:Phaeosphaeria;species:Phaeosphaeria nodorum; 0.885235476 0.881730357 0.87257414 0.833392375 0.863081288 0.846744723 0.814968744 0.876189486 0.847138475 0.828632238 0.856057871 0.842056769 0.841884577 0.865758611 0.885520212 0.881902176 184192113 ppx Burkholderia phymatum STM815 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 0.874912095 0.792017748 0.793425298 0.786196972 0.867232453 0.800312494 0.810143229 0.782228543 0.850861097 116266942 amyA Mycobacterium smegmatis str. MC2 155 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 1.126096434 1.139438798 1.118180721 1.10331816 1.075936889 1.128783536 1.095351813 1.09710895 1.08735129 1.115591764 1.104207373 1.108402371 1.089899232 1.066862679 1.091617987 1.080514861 1.123960373 1.146344958 268608189 xylanase Ruminococcus flavefaciens FD-1 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus;species:Ruminococcus flavefaciens; 0.822331286 0.790527413 0.87811668 0.825922899 0.794337532 0.819858385 0.930523873 357044834 rgh Paraprevotella clara YIT 11840 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Paraprevotella;species:Paraprevotella clara; 1.181246051 1.170639713 1.170749396 1.185101662 1.165968942 1.195476413 1.170434091 1.142584769 1.171360772 1.187934572 1.147061338 1.168362334 1.127943632 1.192910168 1.10470361 1.154482956 1.155348057 1.1345068 316948377 acetylglucosaminidase Pantoea sp. At-9b Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 0.784924348 0.846523131 0.836446071 0.828275133 0.790443739 0.85490654 0.824557237 403197193 linb Gordonia rubripertincta NBRC 101908 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia rubripertincta; 0.832224924 0.83425517 0.863841173 0.835949296 0.840538407 0.829533942 292654689 RgaE Haloferax volcanii DS2 Carbon Cycling Carbon degradation Pectin superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloferax;species:Haloferax volcanii; 0.939275321 0.934960272 0.930838366 0.947556486 0.93847153 0.971823149 0.942473177 0.954484557 0.934658527 0.951856251 0.92896156 0.961264586 1.013375396 0.90617587 0.881315398 0.932168544 0.958960364 0.964704384 118007278 alkb Pseudomonas mendocina ymp Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas mendocina; 1.019517216 1.010409962 0.949207648 0.971248861 0.923401374 1.022847026 0.917725452 0.973911531 0.974218831 0.996730839 0.95057718 0.943541139 0.991441533 1.004669274 0.912778237 0.992955995 1.017143691 1.009967544 343804628 rubisco Marichromatium purpuratum 984 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Marichromatium;species:Marichromatium purpuratum; 0.770700461 0.885122893 0.86717391 0.811562717 389872731 exaa(moxf) Advenella kashmirensis WT001 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Advenella;species:Advenella kashmirensis; 1.023711341 1.00051133 1.012161905 1.050498123 1.012605305 0.979397028 0.964948713 1.02406455 1.008395568 0.989260088 1.00004484 1.056421577 0.97681465 0.956799952 0.977316378 0.998602057 1.03280836 0.982883435 308737275 tfda uncultured bacterium Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria; 0.913051851 1.063956896 0.882873222 0.950152788 0.917622465 0.907126034 0.926765274 0.921224174 0.926572478 0.864529702 0.877063213 0.920319126 0.870319438 0.900120273 0.841928257 0.868903741 0.935843196 0.89646405 219848236 mch Chloroflexus aggregans DSM 9485 Carbon Cycling Carbon fixation 3-hydroxypropionate bicycle superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aggregans; 0.999929679 1.019212203 0.981568217 1.021160709 1.018818959 1.087634961 0.975914974 0.998116962 1.027183255 1.00664402 0.992728242 1.029943951 0.977321427 1.003751386 1.001888079 1.008458483 1.051203107 1.028696605 70930926 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.117915307 1.108249533 1.084476782 1.059429718 1.065241268 1.158895596 1.074381333 1.124416837 1.110539725 1.107651756 1.069196398 1.073195712 1.078474182 1.11681721 1.101817124 1.090436148 1.090898796 1.151210942 29160313 exoglucanase Verticillium tenerum Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;genus:Verticillium; 0.858717665 0.918752221 0.836585883 0.864425339 0.875410083 0.913969106 0.935164522 0.921715196 0.908341999 0.85565998 0.904365919 0.883058852 0.839575302 0.936403725 351729494 xylc Acidovorax radicis N35 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax radicis; 0.974683547 0.905100967 0.922451939 0.995476525 0.931214602 0.948493792 0.942356294 0.955816463 0.961791095 0.91188627 0.937790209 0.962435328 0.908996835 0.918029503 1.007258586 0.924069587 0.961186736 0.901490864 120592900 vdh Polaromonas naphthalenivorans CJ2 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 1.052990223 1.062657042 1.005354911 1.028474279 0.963686655 1.036471417 0.997893479 1.071530185 1.028951337 1.03522585 0.953888842 0.99202411 0.919693406 0.965786134 0.837678973 0.96978505 1.025055621 1.045358247 18535634 endoglucanase Pseudomonas fluorescens Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.977875157 0.987659288 0.983419162 0.988282265 0.985645905 0.998939888 0.989812658 0.993848657 0.980898348 0.98926449 0.99483395 0.984145243 0.971034099 0.963059179 0.954933508 0.975639131 0.991115359 0.99109156 380086169 terc Sordaria macrospora k-hell Metal Homeostasis Tellurium Detoxification superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Sordaria;species:Sordaria macrospora; 0.834176814 0.865908938 0.853105082 0.871817336 0.816642752 0.824506956 0.825580909 0.87639065 0.848400412 148498945 nitrilase Sphingomonas wittichii RW1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 1.264669619 1.249641088 1.229748525 1.260002579 1.243494845 1.25845369 1.232819397 1.244003092 1.251631342 1.240437745 1.214909546 1.238094736 1.212942638 1.227191635 1.234950598 1.229639706 1.266550897 1.214600254 386420628 ppx Thiothrix nivea DSM 5205 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Thiotrichaceae;genus:Thiothrix;species:Thiothrix nivea; 1.006522481 0.959775213 0.96534927 1.011210793 0.981263519 0.980300028 1.012538742 0.986773133 1.110563164 1.004280879 1.008653287 0.989101509 0.985398125 0.921435322 0.962162392 0.952443672 0.979771649 0.982331779 161387290 pcag Phaeobacter gallaeciensis BS107 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 1.080511895 1.074301434 1.065891383 1.037980578 1.081776843 1.088781884 1.098152201 1.103307741 1.061828505 1.059707288 1.081607715 1.057918723 1.081382646 1.009768102 0.952609 1.007889219 1.064532918 1.050392779 399909656 mdlc Halomonas sp. KM-1 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas; 1.192034981 1.146363004 1.136930878 1.216331397 1.12392567 1.16002642 1.140757463 1.106278628 1.155962605 1.145594814 1.150480221 1.174293197 1.128663552 1.12405673 1.078064767 1.125189662 1.18460106 1.145141422 151361342 phytase Kineococcus radiotolerans SRS30216 Phosphorus Phytic acid hydrolysis NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Kineosporiaceae;genus:Kineococcus;species:Kineococcus radiotolerans; 1.05056424 1.07870829 1.03348156 1.026234561 1.017612406 1.025998085 1.006866586 0.996292243 1.047989227 1.039500586 1.041131253 1.01500595 0.994465957 1.002320191 0.985381744 1.00428257 1.053665008 1.043491083 148257564 amyA Bradyrhizobium sp. BTAi1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.834069 0.783835849 0.83799002 0.80015923 0.786873055 162147323 alkj Gluconacetobacter diazotrophicus PAl 5 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter diazotrophicus; 1.350751476 1.316932519 1.345805516 1.371060771 1.33529658 1.314367164 1.366788437 1.38463058 1.363216251 1.317319746 1.337548539 1.368972317 1.302651042 1.274396921 1.315974984 1.300371476 1.322947508 1.283475035 145574544 GAPDH_Calvin Pseudomonas mendocina ymp Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas mendocina; 0.8721946 0.87496744 0.883596281 0.809603847 0.842663883 0.883664989 0.812908743 0.836778115 0.892211732 0.936467321 0.890637653 0.828904934 0.818553552 0.878497241 0.818429864 0.819640693 0.880591568 0.917151175 318062697 ppx Streptomyces sp. SA3_actG Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 1.075008862 1.061998078 1.04445497 1.086573188 1.067972736 1.030338602 1.063642255 1.060904498 1.06844575 1.044295689 1.085009285 1.069895745 1.035344756 1.024921778 0.988186201 1.012145841 1.048054311 1.061382718 50950572 amyA Leifsonia xyli subsp. xyli str. CTCB07 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Leifsonia;species:Leifsonia xyli; 0.887868529 0.869764721 0.890484057 0.87640788 0.900928937 0.956960606 0.916813552 0.888104386 0.884616308 0.89494478 0.836387209 0.898622148 0.898704923 0.884135997 0.831054583 0.8431228 0.908959309 0.944708639 6681581 acetylglucosaminidase Streptomyces thermoviolaceus Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 0.928590585 0.950893855 0.908651277 0.905323775 0.938390067 0.970334078 0.913533334 0.88937969 0.916766798 0.910297291 0.913877434 0.92369605 0.89937824 0.934944881 0.927628764 0.929664903 0.944742896 0.957501791 9622538 bbs Thauera aromatica Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Thauera; 1.197880912 1.188089596 1.124283418 1.146367945 1.12615006 1.177625667 1.140628753 1.16321068 1.147902564 1.168347694 1.12290573 1.137580288 1.091908919 1.134381302 1.061056985 1.141955436 1.183546091 1.190367906 77969955 chnb Burkholderia sp. 383 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 0.929959236 0.939065495 0.902615989 0.926808879 0.894333786 0.901381501 0.892789471 0.896802055 0.918681691 0.894771444 0.910563009 0.899441736 0.880053097 0.903945827 0.899210166 0.890860829 0.945586816 0.944965699 374336684 pcag Oceanimonas sp. GK1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Oceanimonas; 0.919283603 0.893759209 0.927903335 0.935255498 0.911586799 0.917055116 0.901829818 0.914226054 0.912661489 0.937575916 0.908219697 0.946793092 0.864319142 0.859183194 0.816261166 0.831497953 0.876070237 0.834732645 153962712 sqr uncultured bacterium Sulfur Sulfide Oxidation NA superkingdom:Bacteria; 0.794448711 0.918824894 0.799999819 0.81619847 0.830722857 0.852150711 228618663 merb Bacillus cereus R309803 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cereus; 0.92718412 0.896472245 0.940095617 0.93905067 0.921527861 0.932106367 0.942165224 0.944853553 0.939223501 0.906708634 0.871969884 0.907631255 0.909174193 0.933635551 0.906367655 0.88279321 0.914547646 0.944551136 156742878 accD Roseiflexus castenholzii DSM 13941 Carbon Cycling Carbon fixation 3-hydroxypropionate bicycle superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus;species:Roseiflexus castenholzii; 0.943679704 0.995391196 0.972639932 1.006981683 1.002443388 0.954407394 0.958033514 0.961581289 0.971357066 0.977447174 0.919880301 0.970443081 0.935297636 0.916023131 0.849554167 0.895350378 0.953274126 0.97734998 336314710 pgk Rheinheimera sp. A13L Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Rheinheimera; 0.993789239 0.974562305 0.988107573 0.975986858 0.984668109 0.961129067 0.938817133 0.969215689 1.000088932 0.944457783 0.940289729 0.96626272 0.958105775 0.928473931 0.913064707 0.935506825 0.980451363 1.01729317 167594237 pmoa uncultured bacterium Carbon Cycling Methane Methane oxidation superkingdom:Bacteria; 1.088036964 1.077678985 1.067535548 1.072525529 1.089916852 1.106340732 1.087127794 1.072221419 1.068851931 1.087649065 1.077701811 1.073710435 1.080215785 1.028826191 0.991077729 1.038505207 1.084547811 1.094469706 386822692 amyA Serratia plymuthica PRI-2C Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia plymuthica; 0.786986348 0.790862717 161380292 FBP_aldolase Oceanibulbus indolifex HEL-45 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanibulbus;species:Oceanibulbus indolifex; 0.824014553 0.853087479 0.83233743 0.825284184 0.876199133 0.869930535 0.829001891 0.821368357 0.837967096 0.831084625 0.817145629 0.82022942 76058170 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.961610774 0.938120803 0.880054564 1.004731551 0.885595812 0.941984268 0.939783639 0.973800348 0.951157969 0.929596755 1.089674142 0.965642519 0.863826846 0.923533917 0.951699538 0.916294503 0.969589593 0.941648967 297202069 chitinase Streptomyces sviceus ATCC 29083 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 1.212790656 1.228483175 1.201773607 1.235371787 1.205598857 1.179294287 1.189662889 1.187183918 1.200863785 1.20506257 1.184843378 1.212276046 1.159817403 1.159782303 1.125600316 1.151777157 1.194699124 1.185561255 256395125 chitinase Catenulispora acidiphila DSM 44928 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 1.092275353 1.069703413 1.055570463 1.048822443 1.069302027 1.097886302 1.092241931 1.058430572 1.011658876 1.0776547 1.016879833 1.038472896 1.070408036 1.069858107 1.225972996 1.072667693 1.045902303 1.095780776 84663555 dsrB sulfate-reducing bacterium AR1104 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 0.9334409 0.916746533 0.934056209 0.919549865 0.90741945 0.869257361 0.882085645 0.911456901 0.933858989 0.922547904 0.892843241 0.905190756 0.860951814 0.847284243 0.81926367 0.854659632 0.959169116 0.900585092 77390477 arsc Rhodobacter sphaeroides 2.4.1 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 0.78504366 0.841771693 0.822607534 0.826249649 89274948 one_ring_23diox Rhodococcus sp. R04 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 0.894614166 0.853658532 0.919670101 0.920575447 0.888405818 0.889487505 0.911954408 0.910264064 0.910618 0.882114646 0.790568095 0.872427367 0.866763015 0.811889864 0.810621145 0.888635915 0.927832286 197626731 nitrilase Cyanobium sp. PCC 7001 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanobium; 0.957751154 0.884270582 0.951810406 0.954383912 0.94337023 0.918840485 0.921912911 0.936994058 0.914624887 0.885930942 0.899171162 0.936314085 0.877818669 0.876561168 0.8936838 0.825354198 0.898737663 0.942625535 32895084 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.819624309 0.782754813 0.816109469 0.804719913 291245558 aps_apra uncultured bacterium Sulfur adenylylsulfate reductase NA superkingdom:Bacteria; 0.88748212 0.841404881 0.89516827 0.777014128 0.833262524 0.82459648 0.815351633 0.829313092 227494347 acetylglucosaminidase Actinomyces coleocanis DSM 15436 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces coleocanis; 1.031646686 0.966723496 1.026789623 1.048479516 0.988648961 0.967673817 0.988510801 1.002510963 1.002723764 0.981176457 0.994713126 1.015555432 1.006964109 0.947615581 0.960657975 0.9987752 1.005756218 0.974577194 193086561 AcnA Chlorobaculum parvum NCIB 8327 Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobaculum;species:Chlorobaculum parvum; 0.758363112 0.851181576 0.805939403 0.907656087 0.794571648 0.81337387 0.810630439 0.770056948 0.837184592 0.821223142 0.825943292 0.812185631 292833569 alkk Streptomyces sp. e14 Organic Remediation Others NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 0.871644268 0.822384812 0.893424186 0.956004493 0.906229896 0.880298104 0.85615625 0.894159878 0.907438772 0.891014583 0.98413145 0.891409446 0.902994603 0.860175981 0.870700551 0.873371926 0.880872863 0.890742536 88863733 FBP_aldolase Jannaschia sp. CCS1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Jannaschia; 0.997677258 0.979338035 0.939357735 1.008627836 0.982098723 1.029899219 0.973324122 0.978396152 1.013258477 0.989358843 0.981951689 0.995637568 0.943653637 0.978607303 0.946870552 0.96182028 0.980243819 1.013957868 387842568 amyA Fibrisoma limi BUZ 3 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Fibrisoma;species:Fibrisoma limi; 0.806869225 0.834189113 0.846285969 0.826564635 0.813077118 0.850346341 0.867059822 340027049 arra uncultured bacterium Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 1.096290332 1.066363126 1.084079281 1.091477061 1.09470399 1.115118753 1.073810333 1.075823832 1.093696283 1.082750892 1.087633621 1.124529245 1.068684018 1.084498417 1.100624019 1.067267695 1.103465084 1.07329329 116624210 dehh109 Solibacter usitatus Ellin6076 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 1.062857774 1.076198703 1.022786281 1.047917306 1.084959813 1.081107757 0.991592218 0.976039522 0.99659706 1.027778667 0.999480415 1.02756562 1.027507544 1.004010958 0.96908576 1.001577665 1.099568781 1.064818378 335437954 xylanase Halorhabdus tiamatea SARL4B Carbon Cycling Carbon degradation Hemicellulose superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halorhabdus;species:Halorhabdus tiamatea; 1.006834616 1.051229886 0.921729591 0.981679746 0.945943136 1.003027957 0.908161297 0.946973769 0.990258952 0.959443091 0.958176511 0.975456324 0.932678488 0.998453305 0.935967283 0.944503897 1.019197294 0.963476239 161378972 arsc Oceanibulbus indolifex HEL-45 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanibulbus;species:Oceanibulbus indolifex; 0.996987086 1.00463304 0.999432522 1.00314504 0.982369551 1.006023211 0.971274074 0.964455434 0.995039093 0.949837068 0.94902549 0.936131865 0.920515072 0.944524382 0.91718199 0.90047505 1.006943573 1.008012427 116043947 arra uncultured bacterium Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 0.794743239 0.842784595 0.795484103 0.803845001 0.833081393 0.8259659 0.807368498 0.831777208 0.859734208 146410979 catechol Bradyrhizobium sp. BTAi1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 1.208980169 1.23634648 1.183709567 1.209384004 1.201387881 1.21212571 1.203267087 1.192867298 1.216996932 1.182786761 1.184012816 1.206241334 1.183533653 1.166060943 1.162505255 1.157251392 1.201709116 1.214559235 383826212 limeh Mycobacterium xenopi RIVM700367 Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium xenopi; 1.158596644 1.142733743 1.124145579 1.135001996 1.151885988 1.158086675 1.12007854 1.126008606 1.109945097 1.118580167 1.132415494 1.156071342 1.144181326 1.104023185 1.11174397 1.092865547 1.161748992 1.140154568 256833467 arsc Jonesia denitrificans DSM 20603 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Jonesiaceae;genus:Jonesia;species:Jonesia denitrificans; 0.895489316 0.8470271 0.828887232 0.846336917 0.864096863 0.814153833 0.823006598 0.821573066 0.846310606 0.813094439 0.830239549 0.863065527 0.851623562 71735530 vana Pseudomonas syringae pv. phaseolicola 1448A Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas savastanoi; 0.957925084 0.935174566 0.914128823 0.947508199 0.945408131 0.988488919 0.932474731 0.872514385 0.928716152 0.99184441 0.973257636 0.928902356 0.958514485 0.981337969 0.847051209 0.948781312 0.978632642 0.962194936 296093606 amyA Thermobispora bispora DSM 43833 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Thermobispora;species:Thermobispora bispora; 1.336307008 1.324793711 1.331348231 1.299030244 1.323430106 1.359187329 1.31805828 1.308049452 1.312334767 1.3167796 1.321636978 1.317160287 1.283499529 1.286263851 1.244006836 1.302307135 1.324731524 1.327004364 291424984 cda Serratia odorifera DSM 4582 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia odorifera; 1.001592605 1.009032907 1.009110269 1.004529928 1.018032604 1.047321374 0.98991994 0.995626728 1.041976747 1.045575101 1.002080985 0.993863986 0.996886265 1.016539761 0.991175568 0.998142414 1.040116708 1.018087011 288917136 amyA Frankia sp. EUN1f Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 1.381028049 1.377844066 1.363155569 1.363013447 1.343529816 1.354015653 1.335536425 1.359208258 1.346741821 1.336257195 1.356552414 1.364882073 1.339794884 1.319296645 1.353875826 1.322672409 1.381094067 1.33777848 152991669 sqr Sulfurovum sp. NBC37-1 Sulfur Sulfide Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;genus:Sulfurovum; 0.864873805 0.850158237 0.853639559 0.898079835 0.851295717 0.848038581 0.846402419 0.875524146 0.91133224 0.85463207 0.863240064 0.889170567 0.83119489 0.858800839 0.838201334 0.850057286 0.854333206 380494657 dehh109 Colletotrichum higginsianum Organic Remediation Chlorinated solvents NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Glomerellaceae;genus:Colletotrichum; 1.116080095 1.106441573 1.090118089 1.127201839 1.114740723 1.112107832 1.111912052 1.070934555 1.098118568 1.133810483 1.116038081 1.103474097 1.086667375 1.094112109 1.030237596 1.057264972 1.073401303 1.08081009 403380725 phn Paenibacillus sp. JC66 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 0.792332207 0.805781549 0.824645638 0.808354134 85777065 amyA Anaeromyxobacter dehalogenans 2CP-C Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter;species:Anaeromyxobacter dehalogenans; 0.812726373 0.872586886 1.000505111 0.836554539 0.820098441 0.83544208 0.854589194 0.825837416 0.824022563 0.85545645 388530040 b_lactamase Tistrella mobilis KA081020-065 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Tistrella;species:Tistrella mobilis; 0.831777157 0.793024777 0.86037696 0.814876324 0.843700169 0.832321635 223714308 arra uncultured bacterium Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 0.937919483 1.056459706 0.970518753 0.980214385 0.981106935 0.980820558 0.97964024 0.950885629 0.954366849 0.991242088 1.004917815 0.969855637 0.969330257 0.984342205 0.967761088 0.975880548 0.993370432 0.988424851 209518590 phn Burkholderia sp. H160 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 1.121632132 1.145464641 1.097057997 1.108144248 1.070834889 1.154191021 1.071120027 1.06346607 1.054519838 1.070169462 1.086735236 1.061632933 1.053533614 1.111523881 1.082906637 1.083579352 1.131180788 1.09550746 238760545 terc Yersinia aldovae ATCC 35236 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia aldovae; 0.85584099 0.879131862 0.833391145 0.905620633 0.875922299 0.871182169 0.853284967 0.837905349 0.848060321 0.847197695 0.841300335 0.825500052 0.880615406 0.856233716 251790585 arylest Dickeya zeae Ech1591 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya zeae; 1.373515484 1.328610395 1.330502859 1.37573746 1.307868798 1.371806477 1.342373419 1.37244337 1.34289775 1.336323426 1.309872974 1.340302324 1.291089692 1.292076443 1.272175524 1.325288894 1.37163148 1.312573952 300022845 exaa(moxf) Hyphomicrobium denitrificans ATCC 51888 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium;species:Hyphomicrobium denitrificans; 1.05042633 0.969461968 0.960594859 0.928136493 0.84469661 0.928380282 0.89724675 0.919349281 0.92648611 0.892373465 0.925442642 0.933488885 0.834562571 0.904774033 0.867970355 0.890241145 0.913954812 0.948510219 119391415 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.047734833 1.033634059 1.030247063 1.011034225 0.968886996 0.959917071 0.971403687 1.024629433 1.022290334 1.042276452 1.006471788 1.021748553 0.951311723 1.016011364 0.998270308 0.994622988 0.996671716 0.998023371 223886697 phenol_oxidase Polyporus tuberaster Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Polyporaceae;genus:Polyporus; 1.095051333 1.150933878 1.06337872 1.075868049 1.064606134 1.116961371 1.07047477 1.056117407 1.038495577 1.09868986 1.089573915 1.070277976 1.093741494 1.075823732 1.086053464 1.070975762 1.065648851 1.086842107 48094247 xamo Pseudomonas sp. OX1 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.748359501 0.856329477 1.039296584 0.934409768 0.840730799 56709000 norb Silicibacter pomeroyi DSS-3 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 0.964759751 0.957765647 0.947757988 0.950919245 0.923954203 0.947590011 0.910419617 0.933172687 0.940780461 0.946263569 0.906482459 0.969466453 0.919571109 0.881936742 0.95055278 0.925524561 0.977146416 0.976630304 256394993 amyA Catenulispora acidiphila DSM 44928 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 0.809240344 0.812061191 0.83677051 0.873899499 0.822061143 0.833915445 0.853361381 0.860155519 0.849194524 0.810839777 0.846593534 311103473 terc Achromobacter xylosoxidans A8 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter;species:Achromobacter xylosoxidans; 0.754247714 0.816517973 33590262 xylanase Scytalidium acidophilum Carbon Cycling Carbon degradation Hemicellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;genus:Scytalidium; 1.093767233 1.079230004 1.023904238 1.084685727 1.04119366 1.074557793 1.022863721 1.094673173 1.093694829 1.084468609 1.033734958 1.044045818 1.059966992 1.103410216 0.985583768 1.085520202 1.111677092 1.085391885 78061123 terc Burkholderia sp. 383 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 0.850774037 0.969402016 0.864566182 0.825195178 0.876362281 0.857694774 0.84682681 0.861666841 0.860096507 0.870571642 0.82989771 0.902156282 0.858521323 0.901022502 0.897395837 0.837466032 0.903780338 0.930232317 67540930 phenol_oxidase Aspergillus nidulans FGSC A4 Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 1.176021863 1.136402273 1.143890663 1.180665891 1.146846622 1.148775393 1.134613417 1.167218009 1.163871796 1.137000825 1.150887584 1.161860357 1.157265901 1.107611667 1.145034025 1.160670787 1.168105657 1.132837002 170027477 napa uncultured bacterium Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria; 0.950879158 0.942116017 0.916497746 0.948956747 0.943302079 0.971084257 0.912113761 0.904087588 0.904415316 0.938458144 0.909033186 0.933918004 0.92053521 0.912430962 0.911564142 0.950294422 0.950026907 0.96759317 41395431 arsc Mycobacterium avium subsp. paratuberculosis K-10 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 0.840718943 0.867149618 0.844487525 0.855476384 0.835565817 0.845596795 0.859817314 0.826120823 0.850150508 0.85441429 0.833299922 0.862714558 0.829851276 0.854340273 0.81763522 0.84701561 0.845999042 118655574 arsc Burkholderia multivorans ATCC 17616 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 1.098128739 1.122939525 1.058626659 1.103691772 1.067299055 1.108133646 1.057696912 1.057333288 1.070948601 1.071754081 1.051506914 1.061537543 1.049272128 1.045470086 1.008831555 1.056880399 1.092871925 1.098572954 296930048 amyA Starkeya novella DSM 506 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Starkeya;species:Starkeya novella; 0.965471003 0.903354666 0.921735941 0.984470696 0.950750121 0.961313909 0.880448877 0.913249589 0.920296894 0.967091774 0.950391083 0.952119537 0.913141309 0.934258957 0.918115783 0.902657273 1.014164877 0.918718855 119714242 merb Nocardioides sp. JS614 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 1.062176331 1.15952205 1.103379118 1.121306336 1.11348792 1.12908905 1.056065956 1.072932084 1.097465415 1.117540123 1.097137182 1.100743608 1.094125863 1.109679437 1.096219154 1.094645607 1.108344211 1.12683095 290583340 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.837213468 0.784126461 0.879371691 0.833037007 0.813898919 0.788782943 0.855286998 0.888171416 38524460 ara Streptomyces thermoviolaceus Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 0.940656422 0.917366431 0.930495045 0.900906007 0.928827045 0.894703475 0.884618274 0.915873247 0.908974014 0.877485623 0.908391842 0.889572443 0.850418398 0.845742335 0.811186769 0.929810058 0.972137256 297624301 amyA Truepera radiovictrix DSM 17093 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Trueperaceae;genus:Truepera;species:Truepera radiovictrix; 1.086076688 1.018447568 0.944861406 0.981957349 0.955217709 0.97436055 0.934678294 0.993805838 1.027079871 0.97747262 1.050481199 0.976530774 0.934026178 0.917240986 0.937583132 0.974625668 0.996912558 0.9768137 258651580 mhpa Nakamurella multipartita DSM 44233 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nakamurellaceae;genus:Nakamurella;species:Nakamurella multipartita; 1.044010614 1.021810704 1.015114281 1.086475125 0.997935249 1.049566458 1.033596114 1.050144206 0.995112409 1.010452454 1.002480379 1.054683478 0.984491409 1.007456307 1.00681943 1.029984266 1.030259689 1.027893963 121302140 mer Ralstonia pickettii 12J Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 0.855017378 0.86249074 0.916930609 0.967955107 0.96152965 0.929075514 0.949643534 0.870815144 0.976004301 0.924197993 0.909115838 0.909210433 0.903813103 0.895687938 0.892930624 1.066644557 0.938389315 0.93048731 312196157 amyA Frankia sp. EuI1c Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 0.763886451 0.811955069 126737911 tktA Roseobacter sp. SK209-2-6 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 0.814382405 0.840650621 0.811101813 0.813570097 0.852821543 403647740 atzd Gordonia sp. KTR9 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia; 0.764766826 0.825117793 0.792743078 0.79000342 256259389 xylanase Penicillium occitanis Carbon Cycling Carbon degradation Hemicellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium; 0.853551609 0.858815447 0.866404281 0.854251664 0.894849739 0.899109326 0.834702404 0.886141938 0.84242995 0.929658562 0.864238822 0.876643885 0.872719659 0.953898411 0.908922784 0.862684536 0.861678152 0.881942133 257792322 nrfa Eggerthella lenta DSM 2243 Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Eggerthella;species:Eggerthella lenta; 0.7488542 0.781186274 108798992 chnb Mycobacterium sp. MCS Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 1.031349666 1.034370305 0.952007212 1.005954724 1.022223184 1.029276334 0.907917309 0.947100762 0.948329244 1.009342851 0.914767492 0.977914224 0.977191041 0.972542093 0.902575854 0.984238078 1.179251026 0.942566343 156742299 amyA Roseiflexus castenholzii DSM 13941 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus;species:Roseiflexus castenholzii; 0.893762218 0.997572376 0.992066023 0.962084289 1.011972231 1.046106127 0.974077293 0.988295625 0.964107215 1.012329408 0.985770412 0.999523689 0.991991114 0.960136418 0.938481864 0.991397362 0.988683779 0.9800741 260778330 atzb Vibrio coralliilyticus ATCC BAA-450 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio coralliilyticus; 0.942349242 0.883835125 0.962604451 0.835118039 0.833633601 0.830058232 0.925674791 0.869934395 0.838225335 0.842528017 0.8663959 0.955533442 0.878247052 331001837 pula Lachnospiraceae oral taxon 107 str. F0167 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;species:Lachnospiraceae oral taxon 107; 0.918110213 0.988243753 1.021621099 0.906520165 1.014435655 1.04747521 1.049139849 0.918653544 0.862458044 1.073954327 1.05724023 0.945350899 1.027275584 1.072512924 1.146402044 0.93583884 0.916860449 1.072182855 383818773 badh Mycobacterium phlei RIVM601174 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium phlei; 0.870981422 0.865589633 0.894127223 0.893475104 0.806028913 0.862737136 0.82391049 0.817010379 0.909250753 0.854760317 0.834697768 0.867756049 0.815676825 0.837111355 0.902337316 0.842349694 0.902454688 0.894512613 302686354 xylanase Schizophyllum commune H4-8 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 1.097721212 1.069028622 1.050822799 1.063069898 1.043199215 1.093497468 1.007862017 1.023607847 1.040984727 1.05089581 1.041845301 1.024857858 1.026818868 1.042044835 0.999467069 1.037429363 1.111612399 1.064942015 294636431 amyA Edwardsiella tarda ATCC 23685 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Edwardsiella;species:Edwardsiella tarda; 0.804558565 0.816112748 0.814858504 0.799016005 0.879891736 0.830099154 0.844502119 0.828305826 0.856898992 0.82106293 0.844864622 0.842889019 0.788119881 0.843401664 167777438 amyA Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)' Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Leptospiraceae;genus:Leptospira;species:Leptospira biflexa; 0.888425828 0.868297452 0.855393203 0.898562437 0.877342732 0.859016163 0.889135454 0.874870358 0.875082276 0.939435404 0.852547861 0.844809533 0.813128708 0.91887155 0.880415042 0.897227163 292675287 limeh Sphingobium japonicum UT26S Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium;species:Sphingobium japonicum; 1.065130675 1.105827787 1.034557537 1.076242934 1.018174299 1.112214982 1.01207815 1.046797724 1.028600787 1.08845672 1.061743241 1.020512414 1.000314098 1.066319907 0.977783263 1.034408119 1.09362477 1.081784608 383782831 cellobiase Actinoplanes missouriensis 431 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes;species:Actinoplanes missouriensis; 0.950074049 0.938155142 0.910589712 0.968641574 0.899303648 0.935927901 0.903038906 1.007594429 0.954420165 0.917746599 0.912617329 0.94495091 0.838965292 0.856743674 0.850725674 0.875328242 0.930419179 0.9284048 119384830 alkb Paracoccus denitrificans PD1222 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 1.262456375 1.210674151 1.229680968 1.236074511 1.23083219 1.234221168 1.22846633 1.224913678 1.221047762 1.198837521 1.216435348 1.238433378 1.212684716 1.18005212 1.214189091 1.202251835 1.23346795 1.186385284 383640455 B_lactamase_A Sphingomonas elodea ATCC 31461 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas elodea; 0.943113424 0.945607268 0.908819961 0.958458445 0.916388841 0.956365135 0.977521816 0.972328358 0.896091201 0.95775242 0.891229881 0.953591628 0.878546159 0.880100173 0.814093832 0.877456257 0.964855731 0.940420063 167667801 amie Anaerotruncus colihominis DSM 17241 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Anaerotruncus;species:Anaerotruncus colihominis; 0.850131902 0.840448178 0.852899445 0.815839617 302436876 chnb Streptomyces sp. AA4 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 0.925651615 0.819101768 0.91671909 0.96343946 0.941772368 0.852765763 0.948245037 0.877099226 0.910806888 0.87253633 0.90906825 0.865331636 0.890932536 0.842239263 0.935883631 0.879777924 0.86266801 377564652 amyA Gordonia sputi NBRC 100414 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia sputi; 0.947815076 0.973208271 0.967110147 0.979079959 0.955618714 0.941267979 0.919258034 0.90577716 0.86554417 0.894073442 0.908062738 0.925372788 0.917167079 0.850626198 0.859161113 0.91182249 0.976832534 0.943559092 238759193 urec Yersinia aldovae ATCC 35236 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia aldovae; 0.865333732 0.910453167 1.024057598 0.951729823 0.951760814 0.988839231 0.969305535 0.892921369 0.957533197 0.940063245 0.952293525 0.936569321 0.9458729 0.920116417 0.933604625 0.910605024 0.923521401 0.929888199 421953150 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.063444448 1.018888011 0.998255265 0.994817346 0.975167741 1.036087152 0.977144452 0.98700585 0.985472191 0.994273727 0.939962487 0.954067759 1.019175739 1.015727114 0.943653801 0.953538287 1.064472098 0.989524793 218117503 GAPDH_Parabasalia Eucomonympha sp. HsE15 Other Phylogenetic NA superkingdom:Eukaryota;order:Trichonymphida;family:Teranymphidae;genus:Eucomonympha; 0.948331486 0.868719287 0.973065824 0.932039712 0.977166116 0.870695755 0.980665962 0.861998718 0.867168896 0.988615485 0.932165554 0.904147606 0.944363014 1.03411448 0.871660572 0.909340104 0.842926863 0.88852176 154155244 tfda Parvibaculum lavamentivorans DS-1 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Parvibaculum;species:Parvibaculum lavamentivorans; 0.921766688 0.930156755 0.942699188 0.879939135 0.929570585 0.883384834 0.87882563 0.873806307 0.85926987 0.908496969 0.916561863 0.935829808 0.895968489 0.867763418 0.875690595 0.8861489 0.866763125 0.891036791 302580062 tktA Gallionella capsiferriformans ES-2 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Gallionellales;family:Gallionellaceae;genus:Gallionella;species:Gallionella capsiferriformans; 0.851161153 0.84840604 0.879752662 0.816081433 0.835628907 0.859571637 0.813935022 229567699 xyla Beutenbergia cavernae DSM 12333 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Beutenbergiaceae;genus:Beutenbergia;species:Beutenbergia cavernae; 1.089360127 1.161433735 1.038343616 1.129978205 1.053305057 1.101777986 1.00913369 1.110575207 1.07581303 1.092724699 1.038464844 1.082123534 1.038006515 1.059472098 0.992069701 1.04820091 1.114137811 1.101823415 381337624 nirb Marinobacter hydrocarbonoclasticus ATCC 49840 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter hydrocarbonoclasticus; 1.122859196 1.133810393 1.158343567 1.125461777 1.149707075 1.137614048 1.159185485 1.182326191 1.120859074 1.134749841 1.148618 1.150119971 1.12862407 1.09162806 1.074748914 1.075744763 1.118095399 1.131471532 359822558 limeh Mycobacterium rhodesiae NBB3 Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 0.855190585 0.86694419 0.904118607 0.815279957 0.807754043 0.819089536 0.823511285 115375557 endochitinase Stigmatella aurantiaca DW4/3-1 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 1.000646151 1.016598358 0.994022467 0.97486655 0.967296309 165880041 exoglucanase uncultured fungus Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi; 0.831958843 0.819571363 0.847857141 0.820825736 0.793630813 0.836699872 0.785444822 0.817858171 0.864336359 387936667 gdh Cellvibrio sp. BR Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio; 0.899826052 0.975050844 1.102736354 0.927569093 0.973889729 0.972148657 0.918348006 0.898714419 0.9374571 0.993558891 0.965787222 0.982124496 0.980776449 0.927582039 0.898630732 0.978189736 0.980665116 0.975333644 197625046 alkh Cyanobium sp. PCC 7001 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanobium; 0.83805656 0.87010173 0.844947251 0.833424226 0.826612988 0.85022735 0.807585757 0.804676829 0.851540898 0.885521273 0.866979021 356882362 FBP_aldolase Azospirillum brasilense Sp245 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum brasilense; 1.060126906 1.000783166 0.98532431 1.100273529 1.017820527 0.999269608 1.02070681 1.072895824 1.071855372 0.999904785 0.995085623 1.077070533 1.002330026 1.020037491 1.015215371 1.031739749 1.0743389 1.021006065 66801933 narg unidentified bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.931982513 0.908458128 0.905747114 0.953066461 0.850563785 0.933722026 0.921838341 0.924078116 0.9432587 0.919832257 0.943902674 0.915237352 0.905447119 0.89377161 0.831399768 0.939318303 0.957119911 0.928493712 351684111 mer Rhodanobacter sp. 2APBS1 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Rhodanobacter; 1.268841203 1.205674992 1.251151251 1.283381494 1.26530524 1.28217718 1.273086118 1.285077931 1.261726493 1.224620254 1.260904878 1.2713392 1.249220118 1.199444913 1.220448749 1.234136995 1.292219487 1.189581419 133912674 pcag Saccharopolyspora erythraea NRRL 2338 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 0.906782629 0.92704465 0.873387104 0.916720164 0.919924899 0.932258851 0.872420251 0.923198936 0.939302316 0.887193559 0.851012004 0.886349938 0.85759114 0.822512102 0.857837342 0.905694361 0.937372462 335437738 amyA Halorhabdus tiamatea SARL4B Carbon Cycling Carbon degradation Starch superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halorhabdus;species:Halorhabdus tiamatea; 1.079768784 1.089893354 1.006654512 1.086912531 1.059861932 1.096499783 1.059688873 1.043085943 1.046553766 1.062918933 1.047473175 1.081698848 1.044747322 1.038242561 1.035218366 1.057192025 1.055451317 1.055167143 383777497 amyA Actinoplanes missouriensis 431 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes;species:Actinoplanes missouriensis; 1.479824744 1.424499969 1.435909115 1.435623127 1.423702829 1.436472307 1.397371237 1.419081453 1.431001008 1.422046445 1.419368655 1.438912147 1.390976312 1.380161651 1.388948691 1.39804692 1.462204309 1.40796273 91795567 vana Chromohalobacter salexigens DSM 3043 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Chromohalobacter;species:Chromohalobacter salexigens; 0.796748048 0.867832991 0.809578808 0.829495601 158538027 mcra uncultured euryarchaeote Carbon Cycling Methane Methanogenesis superkingdom:Archaea;phylum:Euryarchaeota; 0.968109657 1.01464531 0.938328649 0.962298321 0.934292647 0.996106047 0.965678883 0.932752041 0.93613404 0.944783169 0.966434118 0.962010849 0.945039947 0.907146212 0.937969752 0.943906796 0.966617633 0.958980042 217977946 nira Methylocella silvestris BL2 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Methylocella;species:Methylocella silvestris; 0.788127258 0.803314615 0.813359878 0.801353045 0.777729151 0.823111857 0.817114311 145216424 urec Mycobacterium gilvum PYR-GCK Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 0.924942226 1.006074945 0.896105439 0.927762177 0.842811677 0.916203274 0.85429158 0.937275266 0.931007186 0.914559039 0.849846464 0.895489873 0.841484984 0.861375276 0.854796256 0.939784633 0.950607923 349687562 FBP_aldolase Gluconacetobacter oboediens 174Bp2 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter oboediens; 0.932891812 0.888255084 0.925956622 0.927216416 0.856617666 0.84426647 0.867006633 0.963243614 0.896709024 0.851527257 0.831901978 0.830111532 0.84431051 0.84105495 0.878699868 0.932866571 0.913659914 305856414 ara Paenibacillus polymyxa E681 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus polymyxa; 0.778313809 0.78276614 0.807117952 0.841264437 12659186 nifh Treponema denticola Nitrogen Nitrogen fixation NA superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetes;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema; 0.773122485 0.874099284 0.804026117 0.854856136 0.796940266 0.846175669 0.82351546 0.793936896 0.799456078 309245367 pectinase (pectate_lyase) Paenibacillus polymyxa SC2 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus polymyxa; 0.812048393 0.804844761 0.878306765 0.864855164 0.806013345 0.895200262 0.859176916 0.844854913 0.850324149 0.847225717 0.818175704 0.877959908 0.852433878 0.785151669 0.834321496 110646365 alginase Alcanivorax borkumensis SK2 Carbon Cycling Carbon degradation Alginate superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax;species:Alcanivorax borkumensis; 1.11503837 1.076697187 1.047171213 1.096631475 1.064365845 1.06229039 1.047593388 1.044786387 1.07435926 1.080723976 1.054916609 1.047996823 1.022762977 1.029161823 0.996723093 1.017774375 1.089040003 1.079621079 71001194 axe Aspergillus fumigatus Af293 Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus fumigatus; 0.934917541 0.872152058 0.874000387 0.938676197 0.860466702 0.853554296 0.90978094 0.908524841 0.883905088 0.848302937 0.856598494 0.851840423 0.900910489 0.831045214 0.877173159 0.905044143 219981040 pectinase (pectate_lyase) Rhodopirellula baltica SH 1 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Rhodopirellula;species:Rhodopirellula baltica; 0.828894152 0.878417376 0.800779283 0.900807643 0.834122917 0.85938543 0.846814813 0.878469315 0.828290101 0.834573847 0.846565232 0.835850379 0.868349756 296166833 cutinase Mycobacterium parascrofulaceum ATCC BAA-614 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium parascrofulaceum; 1.424013295 1.384004279 1.390702909 1.401570545 1.363774733 1.428058335 1.38932048 1.39951393 1.382475566 1.393672647 1.37117245 1.417245745 1.346560263 1.355098209 1.370837587 1.371468132 1.389533665 1.350953871 13423934 xylc Caulobacter crescentus CB15 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter vibrioides; 0.954820523 0.928813606 0.928513778 0.957512571 0.950967457 0.91205625 0.980143472 0.979642734 0.960400327 0.933461548 0.948253537 0.947676115 0.972494716 0.889270326 0.912168988 0.872443762 0.927798053 0.916542596 156976058 pula Vibrio harveyi ATCC BAA-1116 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio harveyi; 0.965163317 0.93216579 1.01546607 0.96423774 0.891941101 0.922966682 0.928759199 0.953704195 0.955357805 1.016882054 0.937216001 0.969971465 0.884600166 0.89805656 0.817653278 0.893517725 0.934743383 0.969678371 219542497 mcl Chloroflexus aggregans DSM 9485 Carbon Cycling Carbon fixation 3-hydroxypropionate bicycle superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aggregans; 0.790409751 0.838881359 0.810341449 0.827042292 0.81907693 0.864089615 329902077 one_ring_12diox Oxalobacteraceae bacterium IMCC9480 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae; 1.044956613 1.024002608 1.038897676 1.088918666 1.0304387 1.042892005 1.026776244 1.044747771 1.078666615 1.078797229 1.048950541 1.070476202 1.016311917 1.0134475 1.018704777 1.042032837 1.044223492 1.046495545 332013820 xylanase Sphingomonas sp. S17 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 1.151108086 1.076811419 1.08219902 1.214700283 1.117349373 1.120261858 1.114582676 1.172873995 1.106213157 1.058995144 1.087918035 1.107124516 1.070681617 1.046132153 0.992710657 1.033912632 1.103784246 1.072541979 290969058 fthfs Megasphaera genomosp. type_1 str. 28L Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Megasphaera;species:Megasphaera genomosp. type_1; 0.800544666 0.822128706 0.769195297 0.810416389 0.823193039 0.845656962 0.831659013 0.839180107 0.812303376 0.855822477 0.780440044 0.808480603 0.817700763 0.839833475 120323821 arylest Marinobacter aquaeolei VT8 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter hydrocarbonoclasticus; 0.971953823 0.982315789 0.98385034 0.974488398 0.955133636 0.989855795 0.933732097 0.922248164 0.95713436 1.023851322 0.933375814 0.987742386 0.89581878 0.97091656 0.934010734 0.912811992 0.968963773 1.001438825 259345361 pgk Silicibacter sp. TrichCH4B Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 0.978822482 0.959322225 0.952320793 0.997344721 0.991645762 0.973987494 0.992398691 0.982666923 0.941420775 0.954252429 0.97764397 0.943485015 0.978745579 0.88840756 0.8484591 0.878717148 0.95268847 0.976592971 292664025 GAPDH_Calvin Candidatus Puniceispirillum marinum IMCC1322 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;genus:Candidatus Puniceispirillum;species:Candidatus Puniceispirillum marinum; 0.988762289 0.989685029 0.979998799 1.009373255 0.994370321 0.97238174 1.015569459 1.005773926 0.997787919 0.946191161 0.924291704 0.965806162 0.982336988 0.910383666 0.885579942 0.933222732 0.979123035 0.96242433 333441098 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.885213775 0.817231273 0.898543029 0.913152985 0.854397834 0.861534249 0.837321702 0.889686221 0.902238487 0.862719427 0.83543176 0.88812011 0.868694457 0.884999092 0.914819545 0.8550961 0.916574031 0.887288236 51534869 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.819549609 0.931141568 0.818018233 0.820373137 0.811007154 0.831829776 0.811048439 0.808379862 0.874877821 0.788895559 0.847254591 0.912329636 51869934 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 1.059085362 1.147739091 1.192022084 1.106179387 1.094709917 1.12991395 1.009395514 0.91092157 1.114442482 1.139291182 1.043412363 1.116070712 1.044057075 1.095894698 1.030178798 1.068729006 1.096536486 1.144730172 72395481 linc Methanosarcina barkeri str. fusaro Organic Remediation Pesticides related compound NA superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosarcinaceae;genus:Methanosarcina;species:Methanosarcina barkeri; 0.824000372 0.804092735 0.850580967 0.860512335 0.879828253 0.919338095 0.892269935 0.875518332 0.800943768 0.842520338 0.848331445 0.881795164 0.870697717 0.869648183 0.84640543 0.860140843 0.843921393 63081982 nosz unidentified bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.963622137 0.925612561 0.911718462 0.96342309 0.938288895 0.947517292 0.948753751 0.95852277 0.960187349 0.912032131 0.913203123 0.928272368 0.91859314 0.834157432 0.926178877 0.917317672 0.949890721 0.947037501 386846789 terc Actinoplanes sp. SE50/110 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes; 0.897709351 0.938078478 0.903316125 0.923621735 0.870678052 0.906886952 0.922331138 0.872155941 0.919128634 0.90062151 0.888680227 0.910551615 0.86298387 0.879025296 0.793680963 0.830103174 0.892333042 0.92158298 353192532 limeh Mycobacterium rhodesiae JS60 Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 0.820618036 0.928598063 0.853246906 0.880826181 0.862226763 0.927827381 0.833662087 0.867196312 0.765267523 0.859527567 0.834908068 0.887532636 0.855118794 0.905782568 0.920461218 0.819812377 0.868709631 0.951551262 76803721 alkb uncultured bacterium Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria; 1.128719147 1.06504301 1.175389825 1.142772775 1.073855597 1.108027821 1.131020968 1.106053351 1.154332957 1.114063862 1.113737938 1.102812505 1.098241971 1.052279878 1.112553015 1.092578327 1.128281286 1.079543609 119225912 catechol uncultured bacterium Organic Remediation Aromatics Other aromatics superkingdom:Bacteria; 1.38466496 1.366985991 1.331617193 1.34706547 1.324017921 1.374562083 1.318575694 1.325130307 1.320429776 1.333580808 1.324901347 1.30964086 1.297320042 1.291784433 1.29369567 1.312246773 1.357333692 1.347584823 179346860 soxY Methylobacterium populi BJ001 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium populi; 1.319690865 1.298926094 1.267047571 1.269209101 1.252374801 1.307704766 1.247011839 1.27229001 1.2677521 1.262465013 1.255833549 1.262495536 1.233630856 1.26301223 1.223299896 1.267430061 1.299149595 1.278795684 225194053 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.780591067 0.811801847 338751668 ppx Acetobacter tropicalis NBRC 101654 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acetobacter;species:Acetobacter tropicalis; 0.804901392 0.90657383 0.827308056 0.846773296 0.930167828 0.89767283 0.864012898 0.842940548 0.821836103 0.872625521 0.849433637 0.88641371 0.914927059 90022192 alginase Saccharophagus degradans 2-40 Carbon Cycling Carbon degradation Alginate superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Saccharophagus;species:Saccharophagus degradans; 0.933603849 0.948656835 0.952551263 0.97959595 0.965878489 0.920689105 0.952800907 0.992003 0.966443096 0.993740444 0.960055583 1.019854117 0.936206147 0.964086916 0.905092259 0.968127739 0.920811028 0.955025134 192897548 ppk uncultured bacterium Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria; 0.925694509 0.94503007 0.86758414 0.88532938 0.834051277 0.911294261 0.906050208 0.910383555 0.910370707 0.91010354 0.853946469 0.895813273 0.857801928 0.876573096 0.855522195 0.815518188 0.922279966 0.944383601 33333865 mult_ring_12DiOx Mycobacterium sp. S65 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 0.899140955 0.906657022 0.874018106 0.908286539 0.903505442 0.936181614 0.867929542 0.89295541 0.870880803 0.896738082 0.836649279 0.967498212 0.858028879 0.867901887 0.86808956 0.890758611 0.914332037 302309595 protease_aspartate_fungi Ashbya gossypii ATCC 10895 Carbon Cycling Carbon degradation protein superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Saccharomycetaceae;genus:Eremothecium;species:Eremothecium gossypii; 0.966960458 0.862945222 0.893835582 1.015721558 0.907260834 0.923135006 0.942037395 0.985106876 0.995186257 0.907338786 0.931132506 0.958646106 0.910751904 0.891967958 0.945016031 0.945998115 0.953712108 0.912144218 374601989 bphF1 Paenibacillus dendritiformis C454 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus dendritiformis; 0.973107753 1.02312692 0.95057002 0.999945399 0.956647184 0.937826157 0.973373741 0.959719147 1.006580436 0.923329248 0.955388395 0.994499411 0.993373733 0.91289424 0.924712245 0.953681365 0.993390103 0.924606756 219965733 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.780579685 0.836694817 0.845183715 0.836666511 0.80941837 13992710 dsra Bilophila wadsworthia Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Bilophila; 0.984904493 1.007467247 0.983426402 1.038222764 1.014641964 1.028061899 1.005205935 1.031203664 0.965929206 1.008815311 1.020156954 1.011311759 0.991171334 0.999642655 0.905317847 0.955453798 0.999903675 1.021477764 270288049 exoglucanase Stilbella annulata Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Acrostalagmus; 1.065754468 1.04231032 1.01043279 1.144698351 0.999605478 1.062546379 1.052038396 1.091138901 1.090837147 1.012805516 1.026081197 1.047514614 1.010517815 0.980514475 0.997842919 1.039239611 1.099068269 1.053411187 254442602 ara Verrucomicrobiae bacterium DG1235 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales; 0.981225755 1.024846802 0.978403497 0.959444015 0.981769475 1.026536377 0.996197052 1.005660337 0.982983592 1.002460172 0.961297207 0.978843934 1.025568551 0.970788036 0.956070388 0.965621346 0.964789421 1.035016928 388429536 nosz Rhodanobacter sp. 115 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Rhodanobacter; 0.854757087 0.820932905 0.867721637 0.854376967 0.836083956 10637971 msad Pseudomonas pavonaceae Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae; 0.854124673 0.842718696 0.813996383 0.932787137 0.814688874 0.808713786 0.842640648 0.824079603 0.829358271 0.798609354 0.812669817 0.911719319 355336205 xylm Pseudoxanthomonas spadix BD-a59 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Pseudoxanthomonas;species:Pseudoxanthomonas spadix; 0.838623178 0.803448692 0.848015177 0.885424454 0.834785465 0.806085703 0.855606774 0.861499457 0.844082442 343924910 gdh Gordonia alkanivorans NBRC 16433 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia alkanivorans; 0.954959266 0.927332597 0.963282685 0.962255131 0.952727446 0.985872391 0.974146995 0.995117027 0.941677221 0.955508045 0.965523645 0.971815516 0.92160175 0.916761412 0.895502194 0.912707262 0.951748125 0.975816079 67154492 poba Azotobacter vinelandii AvOP Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Azotobacter;species:Azotobacter vinelandii; 1.271950908 1.279638998 1.2251646 1.243493771 1.244775981 1.261408102 1.211410441 1.249954763 1.225215843 1.230330356 1.23704775 1.242594734 1.226804726 1.229633749 1.223444068 1.220917553 1.25026378 1.254570058 320547119 amyA Streptococcus equinus ATCC 9812 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus equinus; 0.939847564 0.904683987 0.911304705 1.015035942 0.952678546 0.930070429 0.961125734 0.954026889 1.011392506 0.919097711 0.984261155 0.946783868 0.922952192 0.910636533 0.879660237 0.897797631 0.878936947 0.957667511 270265101 amyA Serratia odorifera 4Rx13 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia plymuthica; 0.945529034 0.953947051 0.919312287 1.00471213 0.912758208 0.969778279 0.914593839 0.973826458 0.956504062 0.95495008 0.93627422 0.959632584 0.888336682 0.945155321 0.864407164 0.910086044 0.979945682 0.976827337 336068946 amyA Prevotella multisaccharivorax DSM 17128 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella multisaccharivorax; 0.901191203 0.900766863 0.843012424 0.860132426 0.894753771 0.869709765 0.86420655 0.876335238 0.845793744 0.81631494 0.836700748 0.832230029 0.886654164 0.834765821 0.83118499 0.867043281 0.856967655 289209549 GAPDH_Calvin Thioalkalivibrio sp. K90mix Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio; 0.983268305 0.908219372 0.979630181 1.018356221 0.944879643 1.00435261 0.99441279 1.044761824 1.003654655 0.973317309 0.930283717 0.976668744 0.94046676 0.910633423 0.932061251 0.943563497 0.997464211 0.956355435 76057545 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.460740867 1.422032501 1.382735258 1.40594227 1.356343599 1.425278648 1.347701339 1.382184611 1.394144527 1.385978724 1.365918562 1.387699164 1.378871067 1.326525777 1.341806908 1.343006973 1.441037122 1.390086544 118431474 C_CoA_hydratase_DiC4HB Aeropyrum pernix K1 Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Desulfurococcales;family:Desulfurococcaceae;genus:Aeropyrum;species:Aeropyrum pernix; 1.066513128 1.018223736 1.088819453 1.033857405 0.974824846 1.009293196 0.939890174 0.963708008 1.026242069 1.071404026 1.049223805 0.997387419 1.015119162 1.020365929 0.973028123 0.978207722 1.082951993 1.034583179 242239624 phenol_oxidase Dickeya dadantii Ech703 Carbon Cycling Carbon degradation Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya dadantii; 1.1412458 1.124120829 1.150973861 1.094831636 1.109159306 1.122068666 1.116028653 1.104179883 1.094857605 1.122806691 1.112449306 1.097646354 1.08498632 1.075765246 1.071095701 1.096660404 1.121374142 1.130689157 288315928 endoglucanase Enterobacter cancerogenus ATCC 35316 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter cancerogenus; 0.981174106 0.948068152 0.903677724 0.913263519 0.880307435 0.926759559 0.874739209 0.926207761 0.951367976 0.913642118 0.893074925 0.909103651 0.931059656 0.892076458 0.879667757 0.891288901 0.936948793 0.922711384 239805178 tfth Variovorax paradoxus S110 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 1.154307104 1.15394137 1.13849428 1.13302747 1.106305174 1.140741608 1.092651362 1.121914754 1.115376368 1.139558457 1.10286033 1.10254789 1.0929067 1.125722075 1.065407127 1.102784797 1.143950581 1.145143968 220933290 FBPase Thioalkalivibrio sulfidophilus HL-EbGr7 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio;species:Thioalkalivibrio sulfidophilus; 0.789015433 0.826899716 383447492 amyA Rothia aeria F0474 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Rothia;species:Rothia aeria; 0.935482174 0.908279775 0.931524576 0.950020887 0.89914866 0.926125263 0.921735301 0.88698346 0.901556943 0.940557867 0.951999726 0.906655167 0.920098619 0.927102781 0.883949579 0.878224706 1.009435727 0.915051123 229820013 ara Beutenbergia cavernae DSM 12333 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Beutenbergiaceae;genus:Beutenbergia;species:Beutenbergia cavernae; 1.32336089 1.297416115 1.301243595 1.289132421 1.299484341 1.339607359 1.296715608 1.296315986 1.307959785 1.31716282 1.303011903 1.30609764 1.282015074 1.276254158 1.257788473 1.288403722 1.322061001 1.32023859 170174517 terc Candidatus Korarchaeum cryptofilum OPF8 Metal Homeostasis Tellurium Detoxification superkingdom:Archaea;phylum:Korarchaeota;genus:Candidatus Korarchaeum;species:Candidatus Korarchaeum cryptofilum; 0.86085735 0.823024859 0.893822785 0.869947229 0.873369822 0.856439702 0.896182416 0.857401926 0.855713357 0.880348704 0.889479095 0.896275985 0.822648406 0.854608971 0.855649691 316918965 Sir Enterobacteriaceae bacterium 9_2_54FAA Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae; 0.85071412 0.79476312 0.749902992 0.92358674 0.814713164 0.785254419 83317036 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.838768293 0.798438238 0.828262113 0.824296839 0.818891576 0.861043574 0.835667125 0.803677554 0.793850151 0.862303852 0.791130806 0.823865603 0.823817963 0.815913713 347732924 terc Desulfovibrio sp. A2 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 0.921007551 0.83177643 0.872929674 0.914535613 0.865464458 0.845730843 0.859555252 0.975356196 0.965529978 0.868217243 0.840531901 0.927148004 0.830451869 0.835386298 0.865165656 0.885628444 0.9031013 222543122 phytase uncultured bacterium Phosphorus Phytic acid hydrolysis NA superkingdom:Bacteria; 1.152255749 1.108356149 1.089541279 1.144722107 1.151523923 1.156732061 1.187033152 1.112759509 1.094274505 1.104770992 1.091433434 1.085958901 1.112330581 1.100871187 1.014821623 1.121624979 1.080889897 1.107097749 239833715 xyla Ochrobactrum intermedium LMG 3301 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum intermedium; 0.81715312 0.819343199 0.827067482 0.784695746 0.802479913 0.799248691 0.811516255 0.850761351 76803727 alkb uncultured bacterium Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria; 1.175298173 1.185190453 1.171144174 1.164907394 1.126113522 1.183187982 1.13462526 1.174948597 1.141540213 1.138048923 1.138204522 1.179069836 1.114521103 1.140198514 1.111033782 1.155097067 1.154381465 1.139643369 325676558 limeh Rhodococcus equi ATCC 33707 Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus equi; 0.805175341 0.864763412 0.838991516 0.904457004 0.818581784 0.836093208 0.871634224 118468557 vdh Mycobacterium smegmatis str. MC2 155 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 0.958394407 0.935994475 0.909598318 0.999113276 0.908496178 0.95485582 0.891891401 0.945268181 0.886732867 0.900088315 0.890174215 0.932983912 0.924868763 0.889846212 0.900135285 0.931510291 0.986339157 0.948391423 325536517 pectinase (pectate_lyase) Xanthomonas vesicatoria ATCC 35937 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas vesicatoria; 1.126755364 1.082434852 1.109838827 1.131446313 1.092170019 1.108656475 1.098673251 1.104271604 1.112941968 1.076631141 1.091786852 1.092523967 1.095281835 1.052440945 1.065010641 1.091718158 1.129475959 1.067742137 28869111 poba Pseudomonas syringae pv. tomato str. DC3000 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 0.782788743 0.830034393 289174769 nfsb_2 Xenorhabdus bovienii SS-2004 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Xenorhabdus;species:Xenorhabdus bovienii; 1.116331423 1.068513201 1.112413957 1.118094349 1.106635073 1.141775903 1.091980251 1.115935307 1.079188174 1.093040451 1.084216487 1.129735402 1.042688754 1.064219901 1.039006432 1.086500095 1.132100877 1.110505509 157374446 dmsa Shewanella sediminis HAW-EB3 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella sediminis; 0.770885285 0.827433502 0.773260837 0.82722419 118167430 cdh Mycobacterium avium 104 Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 1.084384286 1.052078524 1.034154095 1.043601265 1.003389068 1.050665257 0.994308601 1.005266432 1.035162177 1.026972265 1.021477495 1.014388319 1.010293256 1.017199188 0.946229044 1.001937048 1.063732786 1.063784833 381397807 amyA Microbacterium laevaniformans OR221 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Microbacterium;species:Microbacterium laevaniformans; 0.976650257 0.986741876 0.893365027 1.211373783 0.88730005 0.9411128 0.907493527 0.959682066 0.941563361 0.916364622 0.892428546 0.926352398 0.873633177 0.931987874 0.906673527 0.909680355 0.978225233 0.989079325 357384932 cysI Pelagibacterium halotolerans B2 Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Pelagibacterium;species:Pelagibacterium halotolerans; 1.199954265 1.199181881 1.15269127 1.200200417 1.192098454 1.167287671 1.178727705 1.191443984 1.191590819 1.184500352 1.17845884 1.208977897 1.171936833 1.143018312 1.138478639 1.181993669 1.196186719 1.135295456 256356849 limeh Catenulispora acidiphila DSM 44928 Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 1.009277118 1.060878032 1.000337577 0.968678268 1.015971945 1.0010807 0.963352137 1.014885228 1.011539014 1.041604837 1.016941589 1.013797958 0.968082026 0.952727608 0.925144975 0.965998397 0.986698645 1.011764412 118469448 cmci Mycobacterium smegmatis str. MC2 155 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 0.865207423 0.813409132 0.858557563 0.815260014 0.847160772 0.870445333 0.830961088 0.805202086 0.829119684 0.789899155 0.816816855 0.846704201 145014131 cutinase Magnaporthe grisea 70-15 Carbon Cycling Carbon degradation Cutin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 0.824786011 0.873377129 0.821549509 0.86803122 0.837585569 0.85149766 0.82780982 0.840386753 226244402 amyA Rhodococcus opacus B4 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus opacus; 1.236250214 1.265230988 1.185159565 1.218277815 1.200956564 1.245119546 1.161645682 1.19385733 1.189846356 1.216218817 1.191997164 1.196007391 1.192064083 1.197131373 1.138265549 1.182774846 1.216929623 1.233160542 374387881 urec Paenibacillus dendritiformis C454 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus dendritiformis; 1.115817502 0.821525565 158312924 amyA Frankia sp. EAN1pec Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 0.982230024 0.942159224 0.98459993 0.940109607 1.03383013 1.039324922 1.023668308 0.987340251 0.933679322 1.021693834 1.004158479 0.959694115 1.006982491 1.009230569 0.967120554 0.934491114 0.978261867 0.987067542 111017396 cdh Rhodococcus sp. RHA1 Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 0.884012679 0.881880598 0.862621135 0.866067543 0.848339047 0.892793993 0.863336444 0.847401631 0.876425386 0.907989841 0.831997843 0.891618595 0.814778694 0.822244804 0.820420542 0.850482417 0.850094115 302532581 xylanase Streptomyces sp. C Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 0.967323541 0.957361655 0.923384417 0.917040347 0.947830944 0.992895229 0.969136198 0.971929021 0.943982543 0.941926715 0.951775911 0.958205932 0.945782933 0.921089018 0.895435827 0.867922405 0.966012538 0.919041243 339790744 chitinase Streptomyces plicatus Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 0.852999435 0.831778636 0.809585168 0.897104993 0.86126706 0.821508265 0.880436224 0.903102455 0.810795968 0.828822489 0.837566006 0.884202733 0.879765802 0.865125559 329851586 ara Asticcacaulis biprosthecum C19 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis biprosthecium; 0.882128412 0.854991787 0.856237924 0.815630623 0.846231131 0.875865673 0.840363636 0.835691975 0.871735003 0.870745236 1.020443916 0.823972972 0.860951452 0.819705276 389867090 amyA Modestobacter marinus Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Geodermatophilaceae;genus:Modestobacter; 1.43209692 1.436187438 1.401424826 1.402560261 1.407957321 1.451280442 1.375709847 1.391164746 1.387955122 1.407961417 1.407834684 1.413006233 1.391673885 1.394977102 1.375401782 1.398960647 1.436121743 1.411093545 254466214 nirk Rhodobacterales bacterium Y4I Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 0.943463335 0.965650676 0.907130789 0.919887605 0.923878826 0.911782623 0.90602869 0.918217728 0.92459933 0.912017371 0.916987951 0.924899353 0.904060136 0.895987914 0.898132405 0.911163461 0.932527163 0.902561641 344318444 amyA Streptomyces sp. SirexAA-E Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 0.95315297 0.939365452 0.875794777 0.959012952 0.855084003 0.958262284 0.902474633 0.938520749 0.940610388 0.938630061 0.858587146 0.90514044 0.835942008 0.951030535 0.864261513 0.907818349 0.933742412 1.004076003 328879314 rubisco uncultured bacterium Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria; 0.809263018 0.808731109 0.851601335 0.817560764 0.830817971 0.90717107 256729734 mer Nectria haematococca mpVI 77-13-4 Metal Homeostasis Mercury Detoxification superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Fusarium;species:Nectria haematococca; 1.006024942 0.893065049 0.9235561 1.158877891 0.934808239 0.970110497 0.957242675 0.897771858 0.920002688 0.902921194 0.960907861 1.002768588 0.854735038 0.858151067 0.825206671 0.937943915 0.929255842 76557515 urec Natronomonas pharaonis DSM 2160 Nitrogen Ammonification NA superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Natronomonas;species:Natronomonas pharaonis; 1.219775056 1.166848618 1.152262432 1.180018772 1.14262168 1.169060756 1.136356439 1.158335476 1.184728841 1.122090266 1.123435555 1.141342145 1.113828986 1.100287483 1.086895085 1.121472349 1.181172572 1.139618539 306527527 arylest Dickeya dadantii 3937 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya dadantii; 0.98572236 0.945219483 0.987855937 1.004554161 0.941152318 0.949574285 0.958398282 0.954368141 1.029906476 0.922191932 0.937109993 0.943219747 0.910378652 0.872134814 0.863512481 0.972477379 1.010636981 0.985487351 317053620 amyA Pantoea sp. At-9b Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 0.862182817 0.861465521 350528177 cysI Candidatus Burkholderia kirkii UZHbot1 Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Candidatus Burkholderia kirkii; 1.305045896 1.254477153 1.267526957 1.288950446 1.269942356 1.270465595 1.274361386 1.275082415 1.264645998 1.256128012 1.272848399 1.286707237 1.238367106 1.207253614 1.227164386 1.229007526 1.271595636 1.233369258 163747024 TIM Oceanibulbus indolifex HEL-45 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanibulbus;species:Oceanibulbus indolifex; 1.034462294 1.045773084 1.057942686 1.035680949 1.023374419 1.069341445 1.030487886 1.0472103 1.02403529 1.004363312 1.01753287 0.993286236 0.9906178 0.934852367 0.96378003 0.999275554 1.017187605 1.063492287 294970658 gdh Brevibacterium mcbrellneri ATCC 49030 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Brevibacteriaceae;genus:Brevibacterium;species:Brevibacterium mcbrellneri; 0.904482849 0.888074093 0.825354231 0.903162237 0.805765358 0.856137267 0.881018792 0.891978747 0.877558284 0.823059312 0.813670734 0.829247545 0.84754868 0.92531061 0.913917158 315588568 amyA Intrasporangium calvum DSM 43043 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Intrasporangium;species:Intrasporangium calvum; 1.038512398 1.043408594 1.024944561 1.013885513 1.058153282 1.064579289 0.985982044 0.988241235 1.01266441 1.033895408 0.9893025 1.011612873 1.005910418 0.994297814 0.998034434 0.984475983 1.035202283 1.041303227 260452426 amyA Streptomyces flavogriseus ATCC 33331 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces flavogriseus; 0.930380884 0.944788893 0.915316097 0.938583839 0.986667911 0.972023661 0.971166239 0.923260891 0.943241498 1.062018931 1.015664393 0.952640646 0.994004066 0.992149009 0.933710908 0.948249006 0.947147834 0.998271451 237858237 GAPDH_Parabasalia Joenia annectens Other Phylogenetic NA superkingdom:Eukaryota;order:Cristamonadida;family:Lophomonadidae;genus:Joenia; 0.992869265 0.97844527 1.010317017 1.007211795 1.014471163 0.968565635 0.99537017 0.949832339 1.054667003 1.053811415 1.006994599 0.959743771 0.991542642 0.944045024 0.945739037 1.018069758 0.974594499 0.966194684 157146457 endochitinase Citrobacter koseri ATCC BAA-895 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter koseri; 0.924334251 1.012183292 0.871587603 0.933539498 0.861022322 0.927625512 0.810752412 0.845099377 0.873605354 0.921674169 0.90203722 0.905133862 0.852763868 0.882981902 0.868667631 0.909953601 0.918727747 0.933152699 107022981 badi Burkholderia cenocepacia AU 1054 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cenocepacia; 1.094371158 1.132055588 1.095441632 1.122603445 1.108896437 1.091678643 1.062997262 1.079355878 1.09101702 1.067105223 1.069875853 1.115939444 1.102590291 1.043699596 1.055102638 1.091880198 1.111015585 1.080102717 229610695 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.826533467 0.800591135 0.826817833 0.832021916 0.853589038 0.845803457 0.831478215 0.80654791 0.836546515 0.837897971 0.784723913 0.83923089 0.856720537 169867023 axe Coprinopsis cinerea okayama7#130 Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 0.797417753 0.808259568 0.805761457 0.807161326 0.79702715 0.829625643 87286584 amyA Blastopirellula marina DSM 3645 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Blastopirellula;species:Blastopirellula marina; 0.82826061 0.796954776 0.84585476 0.848107134 0.878630332 0.789827626 0.834458302 0.881599438 0.853159336 294629486 acetylglucosaminidase Streptomyces sp. e14 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 0.760248935 0.804110612 145017599 tfth Magnaporthe grisea 70-15 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 1.201157004 1.17066834 1.165608618 1.188931803 1.176266475 1.207813404 1.18020662 1.189316043 1.159088917 1.17349089 1.156414936 1.189727902 1.156773215 1.136496773 1.119781185 1.147751514 1.183648965 1.176107754 386419647 arylest Thiothrix nivea DSM 5205 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Thiotrichaceae;genus:Thiothrix;species:Thiothrix nivea; 0.960139337 0.88058634 0.959410137 0.99132124 0.828966323 0.925683231 0.874960471 0.899069028 0.949102453 0.910399273 0.881303745 0.910653708 0.872009542 0.863193622 0.877551555 0.905234154 0.988873768 0.885208504 259502938 narg Lactobacillus antri DSM 16041 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus antri; 1.126356529 1.112453108 1.064996146 1.120712834 1.055760324 1.132256787 1.127561779 1.073161882 1.08484023 1.110357728 1.089963257 1.098775363 1.044286614 1.078677736 1.053079466 1.160037627 1.13078611 1.100740553 295837010 vgb Streptomyces sp. SPB74 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 0.85865262 0.866436582 0.829919175 0.875339373 0.869183907 0.844755061 0.864752681 0.883092417 0.867418732 0.821569151 0.881525759 0.875706668 0.860123212 0.813804776 0.883010364 0.835970739 0.869544408 76666801 APS_AprB uncultured sulfate-reducing bacterium Sulfur adenylylsulfate reductase NA superkingdom:Bacteria; 0.939545559 0.871080714 0.895458561 0.954197691 1.023834683 0.894971032 0.956362913 0.820196082 0.939110722 0.92084727 0.868988838 0.984630516 0.896831289 0.901221484 0.903224246 0.951332086 0.858862369 0.878803537 149812604 phn Roseobacter sp. AzwK-3b Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 0.999346241 1.111165698 0.999386482 1.055159305 1.034740042 1.037366995 0.994041763 1.012880256 0.984102783 0.999081964 0.976011055 0.985199341 0.998566449 1.020027866 0.996396845 0.992059518 1.036095145 1.083184473 315313634 amyA Actinomyces sp. oral taxon 180 str. F0310 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 180; 1.144202829 1.137286599 1.058214991 1.105723486 1.047581049 1.10832088 1.056080961 1.08247014 1.072791072 1.101600605 1.090556632 1.058509302 1.048565316 1.074073114 1.02088246 1.066389737 1.111414842 1.124511415 297552875 ppx Ktedonobacter racemifer DSM 44963 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Chloroflexi;class:Ktedonobacteria;order:Ktedonobacterales;family:Ktedonobacteraceae;genus:Ktedonobacter;species:Ktedonobacter racemifer; 1.552499131 1.495319132 1.506119356 1.499565331 1.473361414 1.465682015 1.472174781 1.47930846 1.503657715 1.448311356 1.458875112 1.498738897 1.429589933 1.393687033 1.433964688 1.443986838 1.506025564 1.464947037 145220951 cysJ Mycobacterium gilvum PYR-GCK Sulfur Reduction NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 1.257681704 1.265135736 1.254234135 1.239865163 1.206690471 1.261424297 1.193988679 1.222508716 1.241213755 1.244541834 1.222137548 1.20735153 1.18568514 1.220741068 1.189008966 1.214047256 1.247522755 1.26288333 329849567 poba Asticcacaulis biprosthecum C19 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis biprosthecium; 1.364055786 1.352296934 1.359971564 1.348385742 1.332079821 1.366019751 1.328857289 1.35262799 1.315627212 1.300094277 1.339097378 1.332222581 1.309446469 1.284011521 1.342486638 1.32079699 1.326466772 1.294520439 89075780 B_lactamase_A Photobacterium sp. SKA34 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium; 0.798209635 0.816758953 0.795730485 284181765 cellobiase Penicillium decumbens Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium; 0.823276194 0.82772285 0.904142188 0.860260566 0.878052892 0.905315974 0.895053634 0.816311704 0.826400815 0.934946307 0.94089242 0.880511862 0.831105309 0.865060266 0.819044946 0.825724586 0.916866238 0.85954326 374667766 FBPase Burkholderiales bacterium JOSHI_001 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales; 1.285710546 1.265587674 1.227225549 1.215059152 1.21552869 1.240662794 1.194332844 1.216777669 1.232535839 1.219897648 1.211655884 1.225448744 1.203265915 1.203917623 1.192446602 1.2042125 1.236044756 1.247980272 397726021 poba Rhizobium sp. AP16 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 0.791104484 0.785196006 0.834873655 0.854900791 0.826846166 374574466 cmci Bradyrhizobium sp. WSM471 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.856295178 0.859060602 0.839308945 0.907349009 0.83845899 0.879214846 0.831227188 0.818394377 0.852031174 0.900836009 0.858031642 0.862308967 0.879728654 0.86675507 0.833673587 0.883517851 0.920338857 0.900374055 111026488 CsoS1_CcmK Rhodococcus jostii RHA1 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 1.362875311 1.33147821 1.291529597 1.29061892 1.297428604 1.372447244 1.282121273 1.303139107 1.298002214 1.275201052 1.308043444 1.29107578 1.293984248 1.284111884 1.280008713 1.328102031 1.376577059 1.315221342 347578453 arsc Gluconacetobacter xylinus NBRC 3288 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter xylinus; 1.273054648 1.277968174 1.250809436 1.31603022 1.259342943 1.344890445 1.26866139 1.248526573 1.274677024 1.250326466 1.250502514 1.285822656 1.240968568 1.238772707 1.242653703 1.269553501 1.278913419 1.224709262 11139540 ppk Mycobacterium ulcerans Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 1.374419414 1.339605378 1.328041271 1.348099822 1.296861127 1.347433958 1.254774557 1.305293509 1.329641616 1.319982255 1.305441092 1.34252352 1.295985478 1.307438687 1.276192792 1.29340801 1.351011413 1.289732053 294637680 nrfa Edwardsiella tarda ATCC 23685 Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Edwardsiella;species:Edwardsiella tarda; 0.820858781 0.877134491 0.909616828 0.874077452 0.858551044 0.83937618 0.830006576 0.815416397 0.796736464 0.852104418 0.807896987 0.865981183 0.858471483 0.844173354 0.840101234 0.847112284 0.83449659 116700520 dsra Syntrophobacter fumaroxidans MPOB Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophobacteraceae;genus:Syntrophobacter;species:Syntrophobacter fumaroxidans; 0.804787498 0.815364433 0.848912946 0.823726153 0.764487876 0.849420439 147886064 phenol_oxidase uncultured bacterium Carbon Cycling Carbon degradation Lignin superkingdom:Bacteria; 1.022235126 1.073738759 0.973850297 1.016132601 1.016025308 1.069826611 1.019157741 1.025044917 1.056996603 1.030420946 1.017864042 1.034436777 0.995304997 1.020099833 0.987064833 0.999851712 1.007833284 1.048977677 169793464 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.023563427 1.001569706 1.087469744 1.045937695 1.023245965 0.963872478 0.981368887 0.985781707 1.030953711 0.962954849 0.96593371 0.972188748 0.956068467 0.935386701 0.962269615 0.906493224 1.037083811 0.928748331 160882868 nrfa Bacteroides ovatus ATCC 8483 Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides ovatus; 0.825441531 0.840775494 0.815069004 0.853678203 0.875010807 0.869325751 0.851862166 0.87189823 0.834672145 0.815069964 0.845336634 0.919730412 365886117 exaa(moxf) Bradyrhizobium sp. STM 3809 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.802649331 0.818997008 0.804585217 0.785383252 0.911931277 0.794276866 0.837932844 0.881438043 0.792885111 0.822582535 345636499 amyA Streptomyces zinciresistens K42 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces zinciresistens; 1.193139102 1.266803509 1.21821711 1.142404502 1.137378449 1.222669292 1.110658227 1.12817688 1.161697533 1.185835307 1.174365502 1.170504129 1.140278187 1.14905424 1.162924415 1.133720322 1.183285468 1.2135531 296453292 amyA Bifidobacterium longum subsp. longum JDM301 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium longum; 0.811842328 0.877315873 0.801330953 0.880781465 0.901674546 0.910117216 0.829145437 0.882084454 0.836589861 0.845177994 0.865769107 0.821453829 0.857799112 403647712 chne Gordonia sp. KTR9 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia; 0.99508581 0.961313629 1.011595204 0.997176355 1.014976317 1.025241106 1.010393994 1.002811924 0.993107079 0.975088237 0.961917344 0.98129737 0.964151385 0.919382485 0.93956151 0.914756929 0.993713005 0.990056566 5830487 cdh Rhodococcus erythropolis Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 0.905907599 0.937694815 0.929374066 0.980143569 0.920138188 0.961817906 0.88818974 0.920971865 0.920257487 0.950687629 0.893241922 0.947823347 0.904181613 0.927127045 0.88796702 0.951865441 0.938396397 0.9107836 126249699 aoxb Pyrobaculum calidifontis JCM 11548 Metal Homeostasis Arsenic Detoxification superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum calidifontis; 0.828292015 0.829690153 0.866191844 0.837379051 0.849986213 0.906620843 0.840883303 0.800999826 0.850703147 0.883210766 0.885527121 0.900942383 0.766866043 0.864494235 0.833258113 0.828618977 0.836194052 33391359 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.079655235 1.154004222 1.064134398 1.067243797 1.027989816 1.060835083 1.017629421 1.031133838 1.056485857 1.051718516 1.010763895 1.054953172 1.007576297 1.039744386 0.993011433 0.995002804 1.039887622 1.059903258 90335180 hbh Aurantimonas sp. SI85-9A1 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Aurantimonas;species:Aurantimonas manganoxydans; 0.804540732 0.814297344 0.874809069 0.830975098 0.867595831 0.828019647 0.852601688 0.851042867 0.893085437 0.886485477 0.821992006 0.83490781 0.877087821 385277748 bphF1 gamma proteobacterium BDW918 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 0.989626252 0.959962579 0.954287381 0.956405218 0.951500178 0.926119084 0.893988873 0.918182098 0.954904065 0.901931731 0.928962138 0.942423849 0.922579924 0.842479031 0.889104325 0.880803314 0.955877796 0.873638621 212673480 phn Desulfovibrio piger ATCC 29098 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio piger; 1.303269034 1.241119548 1.269370705 1.282512597 1.230221302 1.273472549 1.2259367 1.263031789 1.270384696 1.244274756 1.238469274 1.256201776 1.225874814 1.240725988 1.219058542 1.233932487 1.272378348 1.2439925 84685017 ben_bcla Maritimibacter alkaliphilus HTCC2654 virulence NA NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Maritimibacter;species:Maritimibacter alkaliphilus; 1.492979659 1.445636074 1.449703292 1.44598123 1.425215004 1.458335311 1.428450493 1.45179098 1.429851941 1.413136964 1.429871291 1.453727215 1.400990957 1.400383208 1.423855318 1.436463235 1.437795126 1.394055373 315604618 amyA Actinomyces sp. oral taxon 180 str. F0310 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 180; 0.966227594 1.03131297 0.982009527 0.959797816 0.976333021 0.983548849 0.921529006 0.941585663 0.857867689 0.938956606 0.921077692 0.937676083 0.923806966 0.883217752 0.906458002 0.921918211 0.986476556 0.990546377 340619916 xylanase Zobellia galactanivorans Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Zobellia; 1.126160615 1.088446932 1.093665132 1.123402828 1.102499032 1.107710696 1.092271915 1.107402225 1.09595465 1.104656595 1.068746996 1.162675068 1.079323757 1.096746045 1.065813186 1.094919956 1.068018582 1.092999482 99037234 tktA Ruegeria sp. TM1040 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 0.960980817 0.954339911 0.904577512 0.929147268 0.950950043 0.965584393 0.943901694 0.902798137 0.882794729 0.922710029 0.934923078 0.938535473 0.923992161 0.960744438 0.897428026 0.918852424 0.961876571 0.968352311 378824211 tktA Sutterella parvirubra YIT 11816 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Sutterellaceae;genus:Sutterella;species:Sutterella parvirubra; 1.012774813 0.985328055 0.939883096 1.011618562 0.960378577 0.991517399 0.949225307 0.975786084 0.995538467 0.975015059 0.943995138 0.9566314 0.945855897 0.95575147 0.930000605 0.922694282 1.032276862 0.992916706 281357326 heparinase Victivallis vadensis ATCC BAA-548 Carbon Cycling Carbon degradation Heparin superkingdom:Bacteria;phylum:Lentisphaerae;class:Lentisphaeria;family:Victivallaceae;genus:Victivallis;species:Victivallis vadensis; 1.1283095 1.072878193 1.072522323 1.104782948 1.080652684 1.107854269 1.073390026 1.085025106 1.073252637 1.074540123 1.097052295 1.073315241 1.051230057 1.040959737 1.004630508 1.040391464 1.106331056 1.095688098 353207564 SoxC Hyphomicrobium denitrificans 1NES1 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium;species:Hyphomicrobium denitrificans; 0.909702986 0.899286973 0.914177141 0.905312354 0.90530941 0.895197059 0.886369346 0.885575065 0.913685863 0.89514261 0.921222153 0.868453227 0.869994737 0.847484087 0.817663494 0.809432043 0.919038029 0.894526186 121605510 PRI Polaromonas naphthalenivorans CJ2 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 0.946500674 0.877848543 0.924719131 0.962310796 0.88044593 0.868487733 0.892596422 0.918359995 0.933735581 0.856494805 0.871188291 0.896969185 0.874844084 0.887060386 0.829822411 0.868101048 0.93426248 0.894517896 407788360 phn Celeribacter baekdonensis B30 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Celeribacter;species:Celeribacter baekdonensis; 0.943925896 0.905293234 0.943272016 0.91181893 0.923692282 0.921551612 0.915576384 0.912374028 0.940166191 0.933822904 0.926502219 0.910999463 0.908166268 0.880971654 0.916598676 0.935995535 0.919698942 0.925267669 377563408 bphc Gordonia sputi NBRC 100414 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia sputi; 0.877757272 0.964323018 0.873536205 0.875402458 0.914733073 0.946504315 0.904498594 0.873861713 0.884330628 0.986300183 0.911731466 0.922134725 0.896916564 0.932000156 0.844539725 0.958581396 0.906953929 0.958826885 329296030 cysJ Plautia stali symbiont Sulfur Reduction NA superkingdom:Bacteria; 0.82822894 0.884436599 0.834157335 0.814241787 0.854449577 0.841212751 0.821886037 0.814117551 0.879128166 0.816769491 0.781794054 0.837639517 126035057 phenol_oxidase uncultured fungus Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi; 0.869442779 0.857855862 0.827743621 0.853057917 0.877474981 0.893040502 0.885847123 0.880976244 0.905430096 0.901516241 0.871326074 0.899239244 0.872809156 0.848138019 0.849433081 0.904280941 0.873006492 0.892617246 89145062 ppk Microbacterium arborescens Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Microbacterium; 0.837669449 0.766101168 227339893 amyA Sinorhizobium fredii NGR234 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium fredii; 1.296623328 1.255211635 1.275012002 1.269868582 1.258367605 1.310021978 1.251370894 1.258410098 1.271222521 1.267435537 1.263884492 1.280450925 1.246002368 1.29815038 1.262794683 1.261237883 1.302698762 1.269915215 403200630 alkk Gordonia rubripertincta NBRC 101908 Organic Remediation Others NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia rubripertincta; 0.934060625 0.93906722 0.895854305 0.951225742 0.942092766 0.986097207 0.907954405 0.945979916 0.930786171 0.956751935 0.911437444 0.934579831 0.913648963 0.958330772 0.889064366 0.878506988 0.968199234 0.981902063 169117870 mer uncultured organism Metal Homeostasis Mercury Detoxification 1.269506549 1.200934405 1.252357751 1.236131499 1.251649518 1.209596489 1.19361856 1.213410035 1.221287821 1.205568077 1.270772599 1.257396363 1.238582472 1.17044275 1.240690117 1.18380993 1.249536704 1.169383649 14524222 B_lactamase_A Sinorhizobium meliloti 1021 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium meliloti; 0.768154187 0.805701588 0.794669938 0.788686645 0.831765685 158523550 dsra uncultured bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.229312528 1.161068379 1.170607924 1.179477841 1.170494164 1.16336254 1.182009248 1.195396969 1.186357994 1.142503523 1.161700681 1.21496141 1.172475892 1.109306547 1.150423782 1.191674437 1.217676042 1.115040891 149196318 nrfa Lentisphaera araneosa HTCC2155 Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria;phylum:Lentisphaerae;order:Lentisphaerales;family:Lentisphaeraceae;genus:Lentisphaera;species:Lentisphaera araneosa; 0.779524617 0.835021774 0.843167807 0.813452459 0.801953759 0.805607757 0.814671505 0.773822859 0.857649057 339835192 CsoS1_CcmK Acidithiobacillus sp. GGI-221 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus; 0.902674822 0.877237007 0.882229674 0.92472288 0.882368909 0.892292577 0.885623989 0.834945602 0.937138064 0.837133707 0.808425983 0.852026635 0.841996934 0.805455649 0.832296433 0.970810412 0.91945502 239910301 apu Thermococcus gammatolerans EJ3 Carbon Cycling Carbon degradation Starch superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Thermococcus;species:Thermococcus gammatolerans; 0.88645533 0.790569946 60476235 dsrB uncultured bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.843176951 0.894336547 0.907059273 0.826171056 0.852506886 0.863257696 284028820 merb Kribbella flavida DSM 17836 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Kribbella;species:Kribbella flavida; 1.206534241 1.227387352 1.216465845 1.199393091 1.231453786 1.226804744 1.199986511 1.175110659 1.211793459 1.195002849 1.221957454 1.234214923 1.215104745 1.191701232 1.18496371 1.195029292 1.214846657 1.183252103 158316361 cdh Frankia sp. EAN1pec Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 1.236701135 1.211299265 1.192386236 1.214214229 1.188909237 1.226563324 1.195971893 1.194537098 1.19264853 1.188693871 1.176974524 1.197889284 1.188067614 1.143447649 1.172467062 1.166620947 1.231650093 1.192661199 60476050 rubisco uncultured bacterium Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria; 1.216391934 1.138696063 1.054538003 1.057035882 1.10989508 1.06509397 1.06918039 1.128570101 1.109778751 1.105631773 1.201567629 1.101901229 1.08910806 1.016640527 0.977606016 1.042072772 1.078359448 1.10322711 329948071 ppx Actinomyces sp. oral taxon 170 str. F0386 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 170; 1.156394254 1.122427384 1.105098198 1.140661123 1.108495992 1.159586744 1.137305528 1.121647837 1.119343514 1.151709603 1.120598509 1.127493157 1.108535982 1.154099563 1.117709834 1.14270895 1.156456239 1.11972265 269306330 mdlc Xylanimonas cellulosilytica DSM 15894 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Promicromonosporaceae;genus:Xylanimonas;species:Xylanimonas cellulosilytica; 1.120721079 1.115463612 1.079950645 1.101877058 1.09980354 1.130379228 1.078739058 1.087219889 1.07356366 1.064469305 1.059710416 1.084977424 1.067664374 1.092022665 1.043423324 1.066480564 1.113789611 1.099820006 148553455 phytase Sphingomonas wittichii RW1 Phosphorus Phytic acid hydrolysis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 1.193286408 1.192048775 1.188876784 1.163365862 1.169220651 1.202846027 1.147706062 1.164777332 1.147068576 1.16531827 1.164020034 1.175685209 1.156818626 1.153327446 1.132022543 1.163872569 1.179900023 1.191964743 69153892 rubisco Paracoccus denitrificans PD1222 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 0.875880803 0.862246474 0.88953281 0.861229013 0.872468395 0.884743019 0.860012048 0.854628859 0.811626072 0.875307546 0.827311974 0.87609641 0.817468029 0.831659003 0.866453515 0.906623851 0.917687318 302405709 cutinase Verticillium albo-atrum VaMs.102 Carbon Cycling Carbon degradation Cutin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticilium;species:Verticillium albo-atrum; 1.392348445 1.335219116 1.335013906 1.380727327 1.309538803 1.350628842 1.312460177 1.334508031 1.340604001 1.32006798 1.3239636 1.346370611 1.298204846 1.300727872 1.306151906 1.337717031 1.361643721 1.296532024 50982474 pmoa uncultured bacterium Carbon Cycling Methane Methane oxidation superkingdom:Bacteria; 0.950165825 0.953306911 0.908171217 0.968740609 0.916408664 0.90598016 0.927649738 0.96151017 0.877285846 0.895606546 0.942217562 0.948533802 0.933512276 0.862663267 0.842880367 0.883421948 0.903146673 294477398 FBPase Rhodobacter capsulatus SB 1003 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter capsulatus; 0.855998883 0.813654209 0.837088549 166064266 sqr endosymbiont of Ridgeia piscesae Sulfur Sulfide Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 0.981541048 0.970770464 1.0446346 1.000878662 0.977486665 1.079119738 0.993174081 0.99981525 1.00129021 1.024347904 0.962082074 0.945110674 0.971719065 0.957597211 0.950587661 0.993448285 1.037774076 0.98084253 110825324 ccmL Rhodococcus jostii RHA1 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 1.040720037 1.008583226 1.055786006 1.091371031 1.039497518 1.062910177 1.090761415 1.070332461 0.99750602 1.018117311 1.032675408 1.053325802 0.980439706 1.010134667 0.951741004 0.994672001 1.024447009 1.035568751 260850330 mnp Phellinidium ferrugineofuscum Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Hymenochaetales;family:Hymenochaetaceae;genus:Phellinidium; 0.921105106 0.860105888 0.911481604 0.951288955 0.860998593 0.909645181 0.879137371 0.885430507 0.969618359 0.876103799 0.892059718 0.924480399 0.876597256 0.877128502 0.840674087 0.847148399 0.922306748 0.895149563 119879899 cellobiase Salinispora arenicola CNS205 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora arenicola; 1.093088266 1.086996342 1.043270599 1.086457407 1.034749566 1.057534703 1.020290559 1.077268831 1.089912692 1.059702558 1.02795123 1.059829673 0.996031219 1.049762432 1.016386967 1.008505045 1.055078354 1.069403175 357582439 ara Desulfovibrio sp. FW1012B Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 0.875759989 0.840527181 0.874787901 0.861161997 0.871592215 0.849335052 0.897961277 0.897924324 0.83920348 0.833775365 0.830799216 0.853114349 0.832623493 0.799046984 0.874126688 0.849054195 404441825 tfda Mycobacterium vaccae ATCC 25954 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vaccae; 0.844591851 0.959857328 0.864036409 0.813810384 0.845183845 0.813740193 0.820552139 0.80815007 0.769022852 0.832829077 0.837193592 0.814227693 0.901066831 0.794556352 0.799312678 0.855396076 298544349 PRK Gloeobacter violaceus Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Cyanobacteria;class:Gloeobacteria;order:Gloeobacterales;genus:Gloeobacter; 1.017747968 1.021049438 0.952078138 1.013611809 1.013587312 0.963410216 1.061112803 1.017376461 1.039058345 0.988010537 1.002058589 1.021065559 0.971049124 0.952744975 0.872228562 0.961650036 0.982568346 1.026669189 315182493 pectinase (pectate_lyase) Vibrio furnissii NCTC 11218 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio furnissii; 0.851480844 0.932272279 0.800403179 0.859256031 0.824108378 0.813440891 0.813056171 0.799956209 0.853392414 0.830371108 0.789332677 0.880069175 150028866 TIM Sinorhizobium medicae WSM419 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 1.274615344 1.285938687 1.2982371 1.308263772 1.298062064 1.314497619 1.292236769 1.29104189 1.296304433 1.281993002 1.295974924 1.304405452 1.277855538 1.252217139 1.252553957 1.266170289 1.270466177 1.262178726 145283012 PEPC Pyrobaculum arsenaticum DSM 13514 Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum arsenaticum; 0.936889371 0.933935363 0.874875655 0.926822071 0.948173174 0.898292832 0.994787585 0.945649428 0.975295534 0.916745758 0.938179984 0.926270931 0.90764845 0.828433042 0.862489915 0.796329962 0.872674607 0.876641801 209486129 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.995022054 0.974836417 1.021713481 0.993476764 1.001349273 1.004165381 0.987025678 0.950997903 0.978711209 1.04881212 1.017213418 0.974611825 0.966168439 0.99877112 0.888471533 0.971718718 0.986879124 0.993223596 385664631 catechol Streptomyces tsukubaensis NRRL18488 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces tsukubaensis; 0.829805532 0.884528469 0.850221054 0.83461045 0.857216543 0.828755465 0.794776604 0.84020399 0.809581734 0.834689347 0.851271606 0.904003324 390626826 cmua Desulfomonile tiedjei DSM 6799 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophaceae;genus:Desulfomonile;species:Desulfomonile tiedjei; 0.766433436 0.807535216 0.818699414 0.794320055 121553433 exaa(moxf) Verminephrobacter eiseniae EF01-2 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 0.946964946 0.869819533 0.84149433 0.883749214 0.964692306 0.899329835 0.942653568 0.884902398 0.860888411 0.890939651 0.956484648 0.918559612 0.909353107 0.864032048 0.926109853 0.895939129 0.897073832 0.891974541 226187380 bphd Rhodococcus erythropolis PR4 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 0.993422572 1.035070751 0.932321286 0.967115115 1.018280641 1.016186997 0.967998785 0.976898508 0.995730727 1.064019793 0.897741042 0.984337787 0.96686327 1.020860727 1.034892299 0.949412107 1.060152484 1.031004016 333486238 cutinase Mycobacterium sp. JDM601 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 1.208095835 1.193541383 1.15415757 1.155160996 1.168635471 1.175668102 1.184640041 1.143786186 1.142559202 1.215091781 1.18043811 1.16438547 1.159962871 1.156456958 1.112802345 1.136661139 1.167544627 1.177737091 116075361 CsoS2 Synechococcus sp. RS9916 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 0.994115499 0.985759948 1.003726873 1.020630346 0.984626513 0.978511093 0.957514477 0.983536176 1.014410217 0.973591571 0.959719979 0.9923345 0.972003268 0.943890679 0.974911218 0.954585236 1.057355613 1.007216356 225041317 ppx Clostridium asparagiforme DSM 15981 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium asparagiforme; 1.094124399 1.033274275 1.075482577 1.095720214 1.023939863 1.001101838 1.01008874 1.042571069 1.07542303 1.055899742 1.050190788 1.081454196 1.019477901 0.995754239 1.057919146 1.027775116 1.065607575 1.034716604 402698363 pcag Pseudomonas fragi A22 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fragi; 0.759528451 0.789414037 0.794014186 0.788629067 0.854598085 0.828336123 54018042 nirb Nocardia farcinica IFM 10152 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 0.954756301 0.94414267 0.962768435 0.899505653 0.833110736 0.845174499 0.880545766 0.838955763 0.936403511 0.930467559 0.877797976 0.87354968 0.837427402 0.860575953 0.832279155 0.844526965 0.961483277 0.965878955 407251919 atzd Alcanivorax dieselolei B5 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax;species:Alcanivorax dieselolei; 0.848024601 0.905217531 0.869666546 0.920873876 0.885122961 0.934287356 0.902379977 0.87683865 0.926331202 0.922467362 0.960909752 0.947315846 0.908199857 0.899118717 0.911526572 0.898041268 0.919462841 0.947035711 225568883 amyA Clostridium hylemonae DSM 15053 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hylemonae; 0.838996567 0.918267816 0.780044067 0.915352825 0.925441668 0.845225789 0.859763933 312195272 tfda Frankia sp. EuI1c Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 1.036249651 1.017378644 1.025135024 1.04997552 1.016703872 1.022640676 1.00476506 0.998971333 1.027377253 0.996974942 1.038759284 1.021528736 0.98914592 0.945181868 0.953612254 0.973044286 1.015842889 0.987429604 402212570 catechol Pseudomonas putida S11 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 1.06088273 1.054849566 1.055024695 1.079807169 1.036952233 1.054158522 1.049511794 1.061278075 1.047289086 1.050569511 1.056604 1.047215505 1.044908674 1.025005718 1.034083115 1.048063108 1.073485166 1.032390644 333937978 ppx Novosphingobium sp. PP1Y Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 0.975636536 1.040494064 0.925828463 0.937770122 0.964787879 1.023540241 0.943130917 0.938256047 0.925949424 1.012856593 0.915003853 0.983453543 0.96672537 0.959574059 0.904129946 0.966228545 0.953785584 1.005467578 126738786 FBPase Roseobacter sp. SK209-2-6 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 0.988420615 0.960916 0.96701694 0.973813872 0.975935927 0.968829219 0.876881324 0.965041061 1.036359078 0.944027633 0.926816727 0.916471394 0.844400843 0.887151677 0.869608178 0.894324689 1.00024558 1.005153385 226318817 gdh Deinococcus deserti VCD115 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus deserti; 1.026123349 1.002295616 0.991635465 1.038874889 1.023053161 1.007994441 0.994892738 1.005688155 1.028964619 1.011360569 1.004827626 1.004855676 0.981425826 0.951114578 0.946699809 0.937189447 1.024292065 1.001835799 40804948 phn Pseudomonas stutzeri Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.748835705 0.829513575 74038388 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.750312768 0.784940242 0.754698724 0.816255336 119875513 nbac Stenotrophomonas maltophilia R551-3 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 0.930694156 1.07142539 0.859334129 0.938376421 0.859690256 0.926241021 0.867917853 0.872821091 0.93989606 0.886187708 0.859569274 0.890267944 0.84908706 0.886348662 0.86261378 0.943004071 0.994796952 90954635 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.206744579 1.186540622 1.191522781 1.210333957 1.194655864 1.213118747 1.166812958 1.145685744 1.208812201 1.164724088 1.15596345 1.161983386 1.102330692 1.107580312 1.094060594 1.12976424 1.211591637 1.199731557 317485454 urec Bilophila wadsworthia 3_1_6 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Bilophila;species:Bilophila wadsworthia; 1.380104175 1.32767121 1.290480135 1.342452219 1.268049586 1.330875375 1.308081779 1.314572824 1.302026953 1.277326117 1.281275618 1.290585197 1.263898935 1.306976064 1.219762483 1.290078692 1.318489259 1.30460817 219858049 urec Arthrobacter chlorophenolicus A6 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 0.99573126 1.106006796 0.955128701 0.970263811 1.055903478 1.032284538 0.991735904 0.99202388 0.844869905 0.942149574 0.939488175 0.933763096 0.979156537 0.988849309 0.908381387 1.050260612 0.973386192 1.061378891 119391655 narg Rhodococcus sp. D6-28 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 0.984613771 0.974735896 0.96832932 0.986840175 1.001724819 0.97325979 0.935282811 0.901894432 0.928320149 0.947774579 0.922692998 0.968308956 1.000500974 0.940185705 0.91223222 0.966074856 1.013357708 0.975604632 319925415 acetylglucosaminidase Terriglobus saanensis SP1PR4 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Terriglobus;species:Terriglobus saanensis; 0.85812751 0.852639598 0.882031749 0.878224996 0.88421549 0.79563332 0.822244824 0.863483047 0.818812952 0.818680503 0.821164827 0.825962446 0.871103972 0.815979686 0.825880713 0.862500059 0.888660487 315226393 ppx Parascardovia denticolens DSM 10105 = JCM 12538 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Parascardovia;species:Parascardovia denticolens; 1.077274226 1.076369373 1.054740952 1.053445657 1.042618488 1.07531623 1.078835491 1.029921971 1.045744371 1.082010534 1.0520297 1.058741689 1.068872205 1.056523685 1.046661578 1.02935848 1.058070162 1.04761743 297549894 mer Ktedonobacter racemifer DSM 44963 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Chloroflexi;class:Ktedonobacteria;order:Ktedonobacterales;family:Ktedonobacteraceae;genus:Ktedonobacter;species:Ktedonobacter racemifer; 0.880310516 0.898161687 0.87704322 0.917267375 0.920162185 0.842712349 0.872627927 0.956558357 0.92822342 0.870928463 0.891358357 0.905365516 0.859548078 0.869882972 0.844814231 0.83040031 0.8662608 0.90350139 84510386 urec Loktanella vestfoldensis SKA53 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Loktanella;species:Loktanella vestfoldensis; 1.120056597 1.092357656 1.086583658 1.096118018 1.127443811 1.089647607 1.135453258 1.102022608 1.117228322 1.097939231 1.037508573 1.15206604 1.096759732 1.130473433 1.09388062 1.137545827 1.081379297 1.121125286 325538715 exaa(moxf) Xanthomonas vesicatoria ATCC 35937 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas vesicatoria; 0.977247848 0.957315203 0.961806184 1.008072143 0.95204109 0.955018612 0.938130811 0.977712412 0.983998857 0.967618904 0.956470217 0.960684724 0.958334797 0.919456641 0.912479749 0.950442411 0.993405538 0.952883561 342859937 cutinase Mycobacterium colombiense CECT 3035 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium colombiense; 0.783757361 0.824755546 0.833738913 0.807249625 375058029 fcba Rhizobium sp. PDO1-076 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 1.050014081 1.076373688 1.005744274 1.035334093 0.996822387 1.015974369 1.010185336 1.015022121 1.028562595 1.03125424 0.97962317 1.009829418 0.969212823 1.009888642 0.963677049 0.975586171 1.051469766 1.091080123 37726850 dsrB uncultured prokaryote Sulfur sulfite reduction NA 0.985293779 0.958995494 1.000020111 0.995116553 0.90014917 0.960319659 0.943716071 0.968819993 0.950050204 0.993786619 0.907160112 0.978895864 0.898344555 0.942883158 0.834495159 0.93132084 0.963736107 0.992182479 288344444 bphF1 Frankia sp. EUN1f Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 0.840631244 0.887967238 0.820783144 0.83598753 0.880801511 0.834344135 0.810360959 0.807198406 0.807248462 0.827113067 0.836750606 0.826719147 0.841234713 0.876230975 0.894781523 119376651 arsc Paracoccus denitrificans PD1222 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 1.023903302 1.011122287 0.999491867 1.079100771 1.011113406 1.02210715 0.985904633 1.03301074 1.031827132 0.986301451 0.966329525 1.050935238 0.991479812 0.981212146 0.959757494 1.018028128 1.078165355 0.981215092 390573624 mdla Burkholderia terrae BS001 Organic Remediation Aromatics Aromatic alpha hydroxy acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia terrae; 0.876070249 0.845294492 0.895858077 0.944429738 0.887892918 0.902526702 0.897322995 0.922404649 0.898470038 0.872700376 0.869544453 0.872500177 0.829061059 0.808510175 0.804888331 0.881483752 0.858169987 99080052 b_lactamase Ruegeria sp. TM1040 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 0.816852924 0.845726526 0.836282329 0.777901556 0.818470074 0.850775675 0.841910984 0.826702388 0.816353808 0.84046207 0.830160602 0.858850153 0.784772051 0.841269403 0.84742092 0.868006629 291005403 acetylglucosaminidase Saccharopolyspora erythraea NRRL 2338 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 1.268812141 1.161206334 1.174904641 1.19928968 1.227979595 1.198795744 1.185450747 1.206810753 1.198401516 1.177250184 1.203949954 1.209962728 1.176131132 1.144351246 1.150417157 1.165656862 1.200352743 1.167507186 311284389 pectinase (pectate_lyase) Pseudomonas fluorescens WH6 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 1.049401519 0.992152419 1.053444396 1.011692083 0.969309718 1.025096432 0.987741702 1.028638026 1.023967444 1.024105945 0.992900049 0.993385434 1.00594126 0.97940547 0.948080837 1.038548033 1.030514331 1.021176606 359458005 CsoS1_CcmK Acaryochloris sp. CCMEE 5410 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Acaryochloris; 1.039371473 0.9802531 0.983029891 1.027740356 1.043453412 0.990256027 1.019844987 1.103101067 1.015546569 0.98500941 0.988235021 1.003365731 1.008967258 0.955888539 0.972858982 0.999571325 1.026222369 0.966838458 26278906 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.066648029 1.007780659 1.014616744 1.015857733 0.97312418 1.048395021 0.993882495 0.962469445 0.998992703 1.003723794 0.987688267 0.992072286 0.965480836 0.966871036 0.967044197 0.977655755 1.036974931 1.00718126 253998188 fthfs Methylovorus glucosetrophus SIP3-4 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Methylophilales;family:Methylophilaceae;genus:Methylovorus;species:Methylovorus glucosotrophus; 0.800665441 0.815635897 0.891563998 0.896384208 0.874050296 0.825048759 0.822204123 0.876852596 0.806077541 0.812330128 0.825693745 0.813588664 0.862356306 3372159 nifh unidentified bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.909826633 0.835929415 0.922376474 0.977979987 0.915950652 0.885399582 0.92790146 0.927876206 0.907153262 0.906531524 0.899572128 0.938688305 0.899636419 0.858604378 0.844964783 0.919368085 0.875310553 192764460 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.990413787 1.059082436 1.037403669 0.972161643 1.067523128 0.957076131 0.98390494 0.962913519 1.038739552 0.97558805 1.033914938 0.959351584 0.968416219 0.940042318 0.99489921 0.968331441 1.043107526 338811699 fthfs Acetonema longum DSM 6540 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Acetonema;species:Acetonema longum; 1.143337877 1.135388143 1.13396168 1.157510116 1.14866506 1.14944156 1.177233986 1.143381747 1.173908448 1.204543026 1.124244168 1.228968143 1.142533903 1.179497207 1.128094227 1.213636505 1.131038532 1.16483684 118171253 mhpa Mycobacterium smegmatis str. MC2 155 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 0.750610197 0.818663257 0.820670395 0.82955809 340786915 tktA Collimonas fungivorans Ter331 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Collimonas;species:Collimonas fungivorans; 1.051630231 1.025871395 1.035383102 1.047809261 0.994584429 1.033540824 0.992158982 1.028047557 1.055189644 1.009005856 1.019850036 1.017172875 0.97673055 1.018231788 1.038551985 1.034762063 1.043507585 1.043628613 338234961 tktA Bradyrhizobiaceae bacterium SG-6C Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae; 1.138360553 1.140179713 1.136922439 1.149092526 1.120447213 1.149529275 1.12638141 1.126006804 1.130275137 1.102152066 1.134401742 1.132466037 1.050590293 1.061647882 1.036181101 1.08277276 1.140327587 1.106959026 39985190 nrfa Geobacter sulfurreducens PCA Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter sulfurreducens; 1.202938151 1.192283674 1.182456013 1.206110218 1.187709887 1.216892728 1.197596307 1.2009749 1.19529512 1.198509742 1.18193796 1.186075929 1.187353178 1.180049296 1.180191546 1.217919054 1.213386009 1.198554154 66474941 cmua uncultured bacterium Organic Remediation Chlorinated solvents NA superkingdom:Bacteria; 0.921279623 0.936851313 1.005186659 0.896288912 0.849934135 0.921048901 0.874036706 0.87845912 0.918877821 0.93873869 0.87501755 0.881628388 0.855428843 0.875268152 0.82766869 0.852878798 0.923666277 0.951231301 126703786 dmdA Rhodobacterales bacterium HTCC2150 Sulfur DMSP degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 1.14866291 1.12601058 1.11971005 1.144075711 1.101234947 1.152531623 1.081974889 1.120459916 1.119715391 1.131309183 1.111909369 1.127237546 1.120893154 1.106974044 1.088493003 1.102853887 1.126420419 1.123614416 383802374 terc Ignavibacterium album JCM 16511 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Ignavibacteriae;class:Ignavibacteria;order:Ignavibacteriales;family:Ignavibacteriaceae;genus:Ignavibacterium;species:Ignavibacterium album; 0.889066047 0.864495271 0.880434065 0.967809888 0.888260423 0.822267564 0.914194197 0.92713666 0.841356078 0.898474691 0.929824459 0.856825954 0.827842898 0.881894434 0.858311171 0.907606358 0.833823598 339833994 FBPase Acidithiobacillus sp. GGI-221 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus; 0.821700547 0.791238504 0.849464084 0.885660612 0.851437229 0.852450606 0.814239067 0.862883558 0.851601484 0.832421791 219965663 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.185026047 1.168704301 1.15253033 1.176248131 1.13338551 1.173215369 1.148624305 1.174942573 1.143761604 1.140140001 1.135850254 1.15068369 1.113430521 1.10809844 1.092357954 1.127870935 1.162983562 1.165113154 281316683 ara Victivallis vadensis ATCC BAA-548 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Lentisphaerae;class:Lentisphaeria;family:Victivallaceae;genus:Victivallis;species:Victivallis vadensis; 0.816272878 0.812356665 0.845918059 0.850428036 0.847121776 0.796587838 0.859102902 0.81284301 0.800466052 0.830692513 0.918390942 0.834938478 0.805318013 0.822878801 86280536 ppx Rhizobium etli CFN 42 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 0.79549251 0.847307387 0.781113662 0.816217278 0.765120457 0.885161408 118051441 urec Comamonas testosteroni KF-1 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 0.896928999 0.910243053 0.904770891 0.897839405 0.85106707 0.893643223 0.866840526 0.8458167 0.844892419 0.859053306 0.891212167 0.834270749 0.865412233 0.85759792 0.85328992 0.906627198 0.930984663 300390440 fthfs uncultured bacterium Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria; 0.897825879 0.896922961 0.86204882 0.936240646 0.829420495 0.841574448 0.887513761 0.88763596 0.90540362 0.876267284 0.947742018 0.806736917 0.855362714 0.837739467 0.901855111 0.832506825 359313809 cysJ Gordonia polyisoprenivorans NBRC 16320 Sulfur Reduction NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia polyisoprenivorans; 0.953373967 0.960889915 0.927091961 0.968666754 0.922206315 0.953560691 0.892852844 0.920128019 0.979760378 0.95998035 0.915277405 0.925523701 0.891923505 0.933006703 0.831632879 0.909904899 0.974930648 0.988990473 320127769 dsra Geobacter sp. M18 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 0.874579065 0.816608124 0.849848336 0.861779901 0.858552708 0.827468566 0.885871643 0.882324437 0.872900934 0.808140005 0.858877091 0.802506549 0.872322945 0.897622373 119949602 ppx Arthrobacter aurescens TC1 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter aurescens; 0.914172774 0.942274024 0.93747592 1.008068798 0.910855431 1.055808908 0.872719229 0.921004659 0.919558363 0.967565389 0.963217749 0.967906588 0.908658472 0.857855808 0.934481659 1.004591662 0.975014643 355335949 amyA Pseudoxanthomonas spadix BD-a59 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Pseudoxanthomonas;species:Pseudoxanthomonas spadix; 0.919292407 0.880783485 0.891439622 0.881058666 0.889133459 0.867011519 0.878192406 0.877616765 0.85636642 0.844992403 0.885878816 0.852077101 0.851143734 0.812363208 0.861945128 0.86116903 345643755 cysJ Pseudogulbenkiania sp. NH8B Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Pseudogulbenkiania; 0.856008954 0.846554602 0.83723922 0.842456095 0.81277715 0.828194816 0.829704887 0.855963064 0.829924735 0.81472032 0.862294304 0.84657646 329848900 ara Asticcacaulis biprosthecum C19 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis biprosthecium; 0.901982784 0.932297034 0.862598068 0.949294645 0.857079408 0.848629701 0.874011961 0.952671043 0.912283458 0.862709022 0.940185115 0.840475447 353193791 xylj Mycobacterium rhodesiae JS60 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 1.10928845 1.054650702 1.094724461 1.0484896 1.062066079 1.049846121 1.000266548 1.061382422 1.050913195 1.065196138 1.075508093 1.070519832 1.04931252 1.065621649 1.026577666 1.069679418 1.083991219 1.070573042 193996854 phytase uncultured bacterium Phosphorus Phytic acid hydrolysis NA superkingdom:Bacteria; 0.842595238 0.809981688 0.825540138 0.788495613 0.792263471 0.815963635 375105627 PRI Burkholderiales bacterium JOSHI_001 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales; 0.858258575 0.846257181 0.81268194 0.861816456 0.876756605 0.84833975 0.907483278 0.859361824 0.860456367 0.828094402 0.895435298 0.865060625 0.788891047 0.808155836 0.813519473 0.874386634 0.924689735 88643342 dsrB uncultured prokaryote Sulfur sulfite reduction NA 1.063021535 1.095078556 1.05957969 1.067925786 1.028487954 1.074806225 1.014280401 1.043986381 1.054960893 1.029850856 1.019367933 1.060456498 1.024994618 1.036048305 1.042098626 1.058989551 1.086034172 1.073617714 193876549 rd Dehalococcoides sp. MB Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidia;order:Dehalococcoidales;family:Dehalococcoidaceae;genus:Dehalococcoides; 0.832345478 0.846275061 0.823999105 0.833896609 0.82090032 0.829252208 0.827798718 0.861887636 0.837889731 0.814095307 0.850845566 148242001 endochitinase Synechococcus sp. RCC307 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 0.939478835 0.958252463 0.943346825 0.901913014 0.957433775 0.971492999 0.983897717 0.941864721 0.955712666 0.953099935 0.888713679 0.994769767 0.87774724 0.929726322 0.928301663 0.909109657 0.871071955 0.913301077 34104244 endochitinase Chromobacterium violaceum ATCC 12472 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Chromobacterium;species:Chromobacterium violaceum; 0.762433207 0.815190714 0.814934439 0.805389897 148724107 one_ring_23diox bacterium B-358 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria; 0.969509245 0.917186075 0.885324138 0.928274226 0.844701227 0.914682459 0.867934261 0.899903015 0.904647331 0.871277735 0.884210855 0.901670979 0.838415232 0.898569568 0.814753866 0.845600196 0.906585456 0.919444706 3157534 nifh unidentified nitrogen-fixing bacteria Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 1.015965932 1.051891374 1.011838178 1.013687354 1.007144427 1.024833459 1.027293369 1.004182445 1.005043927 1.00054631 1.006628241 0.998107482 0.995049496 0.992497638 0.923978735 0.942704745 1.002071774 1.023226622 315444915 linb Mycobacterium gilvum Spyr1 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 1.050261393 1.064759705 1.059422773 1.042458166 1.034426041 1.062863109 1.028431412 1.084921764 1.029986993 1.0713683 1.016730288 1.049899302 1.01585465 1.042477792 0.958057068 1.025575209 1.041995824 1.070387113 151578 catb Pseudomonas sp. Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria; 0.899207981 0.882425019 0.870307139 0.928275257 0.86014841 0.906047489 0.854442926 0.906314975 0.917034616 0.868225767 0.86271497 0.868648634 0.824209839 0.894481949 0.810255216 0.870432103 0.890721449 0.909236594 255292040 catechol_b uncultured bacterium Organic Remediation Aromatics Other aromatics superkingdom:Bacteria; 1.00791901 1.154351241 1.005795625 1.111994575 1.115103284 1.094312159 1.100894411 1.013711318 0.998459517 1.065410325 1.056865451 1.043174074 1.07791634 1.044658889 1.020800201 1.035617985 1.008663341 1.050323761 3220207 endopolygalacturonase_fungi Aspergillus aculeatus Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 0.911326367 0.836785474 0.864756973 0.923669542 0.927785969 0.888389123 0.910450193 0.832440762 0.857723049 0.899859005 0.902949445 0.922428433 0.893749432 0.864584132 0.870423558 0.86319372 0.842737652 0.812691569 308225478 FBPase Oscillochloris trichoides DG6 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Oscillochloridaceae;genus:Oscillochloris;species:Oscillochloris trichoides; 1.447437161 1.461669571 1.388982138 1.464716813 1.397754923 1.457514285 1.38386229 1.429667615 1.427278639 1.429095983 1.399581432 1.451955266 1.409793644 1.412097301 1.384808684 1.426043651 1.439288933 1.417986056 189206015 Sir Pyrenophora tritici-repentis Pt-1C-BFP Sulfur sulfite reduction NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 0.922654659 0.877983114 0.920833034 0.980720837 0.925644103 0.981098944 0.980179685 0.930340544 0.958637077 1.003499894 0.922616924 0.878482157 0.940958825 0.947271983 0.907123358 0.957314311 351683431 cysI Rhodanobacter sp. 2APBS1 Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Rhodanobacter; 1.063261909 1.044184754 0.999828323 1.064037684 1.027162849 1.065929404 1.076490585 1.073275777 1.038856146 1.030925062 1.042220254 1.066568755 1.049085025 1.018988431 1.054303219 1.066604338 1.063815944 1.032750061 323467931 rgl Arthrobacter phenanthrenivorans Sphe3 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter phenanthrenivorans; 1.273150667 1.300560591 1.234565487 1.267156674 1.248911962 1.28027821 1.243006476 1.25454137 1.246104231 1.23267535 1.255832799 1.27307321 1.233017032 1.219718999 1.222913928 1.218524411 1.254779332 1.192030966 156523583 one_ring_12diox uncultured bacterium Organic Remediation Aromatics Other aromatics superkingdom:Bacteria; 0.853876295 0.884803724 0.921808216 0.886591465 0.902000564 0.896703297 0.895340114 0.899681039 0.884605326 0.915831761 0.914462788 0.864066038 0.835219203 0.862874345 0.880908711 0.909131704 119897685 TIM Azoarcus sp. BH72 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 0.897707066 0.815154724 0.819889656 0.868589215 0.836771074 0.862082567 0.857701659 0.86865715 0.82948355 0.840889691 0.864837177 0.854030062 0.865198294 332970113 urec Psychrobacter sp. 1501(2011) Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter; 0.903333956 0.8297806 0.8864603 0.90689274 0.823469097 0.805146602 0.875997665 0.883259233 0.819797655 0.891545264 0.94587743 0.826782469 0.848277481 0.843003586 0.868152908 0.840901835 221633906 amyA Thermomicrobium roseum DSM 5159 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Chloroflexi;class:Thermomicrobia;order:Thermomicrobiales;family:Thermomicrobiaceae;genus:Thermomicrobium;species:Thermomicrobium roseum; 0.982891388 0.871983524 0.894822643 0.915702428 0.851976334 0.862804813 0.888886509 0.89841545 0.837358915 0.872602216 0.903651222 0.84198078 0.85363805 0.858472553 0.884700782 0.858985971 229750937 mannanase Stackebrandtia nassauensis DSM 44728 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Glycomycetaceae;genus:Stackebrandtia;species:Stackebrandtia nassauensis; 1.242669478 1.234485013 1.181951385 1.214127321 1.195954113 1.226322583 1.194995418 1.198222825 1.178734835 1.176571034 1.20291027 1.199612739 1.184249524 1.174749852 1.175891965 1.187312898 1.190535651 1.172726273 302698659 exoglucanase Schizophyllum commune H4-8 Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 0.850709626 0.818885122 0.819417538 0.857296887 0.833250167 0.803322193 0.809172937 0.817259171 0.817890972 0.846030558 0.802662504 0.837347536 0.798951322 0.809922877 0.795539376 0.844525944 237858255 GAPDH_Parabasalia Metadevescovina cuspidata Other Phylogenetic NA superkingdom:Eukaryota;order:Cristamonadida;family:Lophomonadidae;genus:Metadevescovina; 0.930295627 0.876859648 0.871617008 0.901557213 0.857133028 0.88731795 0.912665011 0.880911294 0.904917168 0.903353046 0.896275347 0.881897421 0.851683082 0.807922485 0.82562482 0.909820409 0.920298162 28809300 amyA Vibrio parahaemolyticus RIMD 2210633 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 0.845634238 0.894224908 0.881127208 0.891677098 0.893204888 0.851786994 0.879903706 0.879275214 0.883325173 0.864994185 0.823058901 0.863733112 0.866399376 0.836354713 398142356 bphF1 Pseudomonas sp. GM25 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.79864429 0.794128536 0.928620884 0.77449285 0.778446232 0.811059133 0.794935777 0.806499022 0.879028108 0.813989657 27922984 phospholipase_D_fungi Aspergillus oryzae Carbon Cycling Carbon degradation Phospholipids superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 1.312169659 1.280948925 1.263665129 1.264872944 1.238553811 1.278765817 1.247724961 1.254833354 1.249117078 1.268463185 1.259246047 1.258896003 1.228437334 1.2264809 1.214638459 1.241731124 1.261757593 1.259611537 330720013 fthfs gamma proteobacterium IMCC2047 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 0.820844406 1.022557995 0.891044534 0.875288101 0.803863454 0.812124391 0.795614398 0.832109023 0.848851181 0.87616444 0.971082125 0.817473729 310914399 tutfdg uncultured bacterium Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria; 1.02292635 0.981112658 0.961143758 0.941477337 0.926891961 0.950187012 0.889226291 0.923766286 0.916456707 0.941762529 0.99881069 0.913991395 0.868761384 0.881431063 0.843082893 0.849454272 0.928403129 0.985187335 326387268 urec Novosphingobium nitrogenifigens DSM 19370 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium nitrogenifigens; 0.877642304 0.829011075 0.868099572 0.862878154 0.868382932 0.862593849 0.861225384 0.825138932 0.902336953 0.87853721 0.831616576 0.803964781 0.838639289 357975286 linc Sphingomonas sp. KC8 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 1.030129884 1.022126766 1.008811618 1.035951053 1.02972155 1.023571265 0.973883009 1.005310743 1.000859034 0.989210659 0.980315114 1.007438044 1.002504612 0.967044863 0.988834328 0.941184857 1.012730395 0.999492724 256379342 endochitinase Actinosynnema mirum DSM 43827 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinosynnemataceae;genus:Actinosynnema;species:Actinosynnema mirum; 0.9156874 0.986163537 0.930765201 0.928966261 0.911417486 0.957373504 0.932439514 0.927478637 0.985538009 0.957227697 0.889595294 0.901723955 0.905934295 0.906868967 0.88516813 0.867526047 0.950653013 0.972872748 197296840 b_lactamase uncultured bacterium BLR10 Virulence Antibiotic resistance Degradation superkingdom:Bacteria; 0.788050808 0.81737787 0.866801119 0.814831113 0.798091605 0.835100587 345099043 rubisco uncultured bacterium Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria; 0.882507819 0.930960654 0.963099265 0.97569038 1.097460192 0.938134827 0.989584196 0.943346729 0.939061589 0.964809283 0.956137846 1.228055907 0.927667511 0.902158299 0.889839464 0.927822943 0.877588644 0.918686685 359779794 mdlc Pseudomonas psychrotolerans L19 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas psychrotolerans; 0.881376998 0.845048381 0.821823177 0.885991508 0.869114584 0.913897494 0.828472969 0.809400678 0.863261059 0.824529081 0.858327013 0.820681977 0.937693286 0.915400824 83573380 dsra Moorella thermoacetica ATCC 39073 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Moorella;species:Moorella thermoacetica; 0.964624964 0.964958013 0.982832902 1.002570001 0.994532385 0.944402908 1.014836275 1.002623653 1.048839281 0.963224075 0.975491414 0.991142859 0.965687478 0.868839906 0.895579314 0.918883705 0.988027342 0.954496139 379058324 amyA Serinicoccus profundi MCCC 1A05965 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Serinicoccus;species:Serinicoccus profundi; 0.891916354 0.873247164 0.824164453 0.953927134 0.834293556 0.803815819 0.8698494 0.867583404 0.910660071 0.855640369 0.872256759 0.858333721 0.817444042 0.872662353 0.892939265 0.869460229 110680036 dehh Roseobacter denitrificans OCh 114 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter denitrificans; 0.825977715 0.88510293 0.832393239 0.884155791 0.874181509 0.855208618 0.869092211 0.887302776 0.860295344 0.856440375 0.867178665 0.887206407 0.82848582 0.833234107 0.844558486 0.863543323 0.862884257 337285164 amyA Pyrococcus yayanosii CH1 Carbon Cycling Carbon degradation Starch superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Pyrococcus;species:Pyrococcus yayanosii; 0.808032995 0.828974721 0.879792463 0.782416768 0.842625935 0.859260512 0.861094211 0.823627789 0.821735883 0.825879441 0.810454303 0.876861896 0.81975961 0.896495611 0.850034892 0.873125197 57233757 rd Dehalococcoides ethenogenes 195 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides;species:Dehalococcoides ethenogenes; 0.807471897 0.804791264 0.864210103 0.887148309 0.885829268 0.859748976 0.856275959 0.870550795 0.891015831 0.880755354 0.901385658 0.939221574 0.849339979 0.821000469 0.799527351 0.841780904 0.852614203 295439518 xylj Burkholderia sp. CCGE1002 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 0.996046628 1.055277249 0.965904485 1.048014655 0.957401849 1.008926181 0.860352452 0.938618069 0.939363152 1.031003889 0.950014521 1.022252604 0.969406465 0.95375933 0.92338237 0.984714698 1.003496537 1.022015086 260597160 pme Cronobacter turicensis z3032 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Cronobacter;species:Cronobacter turicensis; 0.817773386 0.809489109 0.838853678 0.840185253 0.821223701 0.826420408 0.797428942 0.859127106 0.828887573 0.836711577 0.861237472 151302191 APS_AprB Desulfonatronovibrio hydrogenovorans Sulfur adenylylsulfate reductase NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfohalobiaceae;genus:Desulfonatronovibrio; 1.061646904 1.075763112 1.025357744 1.007457804 1.057868451 1.070061739 1.035576558 1.048307309 1.010495267 1.045857719 1.004676175 1.025293091 1.05255089 1.047442747 1.079221659 1.079906282 1.061378253 1.061442069 374424072 TIM Bradyrhizobium sp. WSM471 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 1.12162869 1.101696559 1.026333255 1.030106705 1.011774675 1.043274536 1.00353801 1.048526506 1.080639329 1.036998492 1.065864135 1.061453569 1.002308749 1.031686265 0.98108971 1.029724491 1.066241188 1.076744673 377561802 amyA Gordonia otitidis NBRC 100426 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia otitidis; 0.815900702 0.894281537 0.875758935 0.808832808 0.808944979 0.843566714 0.815232852 0.824441768 220913345 acetylglucosaminidase Arthrobacter chlorophenolicus A6 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 1.315169441 1.279897524 1.233242996 1.306150921 1.239125183 1.27832219 1.224762907 1.247154697 1.275304636 1.230298925 1.243880684 1.262449685 1.236153484 1.222552456 1.177500425 1.230612723 1.260491596 1.256641613 377533790 cysJ Gordonia terrae NBRC 100016 Sulfur Reduction NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia terrae; 1.082372363 1.051261782 1.048513564 1.066657868 1.075968949 1.050685243 1.007212275 1.006856715 1.042013695 1.002742967 1.013601284 0.99698415 1.034304819 0.989430171 0.996268353 0.983950623 1.081109227 1.031402981 296136583 arylest Thiomonas intermedia K12 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Thiomonas;species:Thiomonas intermedia; 1.116878623 1.096195077 1.088476252 1.131434308 1.143255072 1.136161123 1.099898016 1.099499459 1.115020965 1.071451074 1.116327897 1.109659567 1.063380363 1.040687755 1.06338181 1.071229601 133910864 amyA Saccharopolyspora erythraea NRRL 2338 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 1.440038185 1.446992553 1.418725369 1.407569958 1.391122885 1.41163817 1.410756382 1.394646 1.419152736 1.437463084 1.406595888 1.432897659 1.393593636 1.398885683 1.39717149 1.409550519 1.428496456 1.432520254 349780212 CsoS2 Thioalkalivibrio thiocyanoxidans ARh 4 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio;species:Thioalkalivibrio thiocyanoxidans; 1.1634109 1.147814822 1.138368641 1.130635363 1.122201676 1.15892187 1.109307614 1.110667132 1.120003246 1.128122891 1.110301341 1.099150206 1.089895165 1.091253363 1.074329995 1.074421536 1.142438689 1.127365106 139003600 nifh uncultured nitrogen-fixing bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.903720188 0.900245721 0.886898878 0.873960412 0.846336299 0.883263548 0.876171675 0.865891769 0.879269654 0.958802772 0.950583061 0.886028617 0.888152869 0.901978113 0.885351033 0.843859522 0.844417041 0.904652064 159105229 phospholipase_A2_fungi Malassezia globosa CBS 7966 Carbon Cycling Carbon degradation Phospholipids superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Exobasidiomycetes;order:Malasseziales;family:Malasseziaceae;genus:Malassezia;species:Malassezia globosa; 0.983275197 1.035241386 0.958204253 1.015178504 1.002226639 1.015706653 0.964950139 0.926155874 0.981346563 0.990239462 0.946818133 0.985623451 0.96137709 0.944127686 0.941449259 0.961914181 0.982967246 0.981214878 23308935 cmci Corynebacterium glutamicum ATCC 13032 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium glutamicum; 1.135517621 1.152331266 1.131381525 1.128473279 1.11882927 1.12109922 1.118760726 1.159845486 1.125246406 1.125896245 1.138862549 1.169231048 1.087467958 1.104276416 1.103753782 1.110714477 1.108645121 1.140820514 371718151 amyA Caldithrix abyssi DSM 13497 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;genus:Caldithrix;species:Caldithrix abyssi; 0.880262511 0.923802266 0.817026417 0.84699061 0.863113155 0.821010713 0.808038152 0.842859346 0.870705084 0.870163171 0.858301302 0.830301103 0.833826052 0.866513272 0.831006764 0.84641991 0.890180545 346644297 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.753556735 0.779761809 0.782200239 0.795033077 39059 xyla Arthrobacter sp. Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 0.91638804 0.949276469 0.876397579 0.907634939 0.891636525 0.944615158 0.840558896 0.861284943 0.900465165 0.910421657 0.899046924 0.8953477 0.893719347 0.874510803 0.865302847 0.841910017 0.943489099 0.963140681 113946682 terc Salinispora tropica CNB-440 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora tropica; 1.26503042 1.236627221 1.230115367 1.235693159 1.239534512 1.236728332 1.205885676 1.211195401 1.235415989 1.245819141 1.24266402 1.23277542 1.207235458 1.205664462 1.198151901 1.232372071 1.244668692 1.225083088 162281561 xlnd Hoeflea phototrophica DFL-43 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Hoeflea;species:Hoeflea phototrophica; 0.945400206 0.958749287 0.940046071 0.909977681 0.915169697 0.932020129 0.915328073 0.901856853 0.90484704 0.941996503 0.919841173 0.926672922 0.913197804 0.888433273 0.869299498 0.858035598 0.938677137 0.962437636 83949587 dehh109 Roseovarius nubinhibens ISM Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius;species:Roseovarius nubinhibens; 1.289351619 1.272518082 1.258590406 1.245338533 1.23054054 1.281196581 1.209967645 1.232630051 1.237903728 1.251370831 1.240397934 1.24530737 1.226639553 1.226429294 1.214294682 1.228940284 1.267504585 1.272088669 357600012 chnb Novosphingobium pentaromativorans US6-1 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium pentaromativorans; 1.033673138 1.08635538 1.045189657 1.003794473 1.012737988 1.121305894 1.021084684 1.032943092 1.017580558 1.064327551 1.024645365 1.002466774 1.068430373 1.062340288 1.038576724 1.07785814 1.152495343 1.104075127 380683803 amyA Phaeospirillum molischianum DSM 120 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Phaeospirillum;species:Phaeospirillum molischianum; 1.023005077 1.00502469 0.98233932 1.000047 1.006410425 1.002713546 0.990306596 0.970783032 0.999695369 1.021881342 1.009527774 0.990270276 0.994384586 1.016556892 0.96111344 0.985104453 0.980136008 1.013899568 347527445 sdsa Sphingobium sp. SYK-6 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium; 0.77653732 0.892513955 0.807669372 0.929120045 0.889925195 0.84614331 0.911783482 0.864111924 0.882179881 0.823260599 0.838159139 0.832812778 0.861433572 0.831588235 0.829527503 0.813257612 0.839389412 0.849247953 363713893 endoglucanase Acetobacteraceae bacterium AT-5844 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae; 0.788359718 0.823212824 0.868480027 0.814787764 0.830619819 0.810702915 134079039 tannase_Cdeg Aspergillus niger Carbon Cycling Carbon degradation Tannins superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 0.857444207 0.855889961 0.826991952 0.791786394 0.803330122 0.810725674 0.784901846 0.808098128 0.85429371 375055287 tktA Rhizobium sp. PDO-076 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 1.229224783 1.116861081 1.172275913 1.256218259 1.130919068 1.147986268 1.157910599 1.206848304 1.21184604 1.101167401 1.153595658 1.184989536 1.138810168 1.130833557 1.116154045 1.138510493 1.215792484 1.087095778 62358829 GAPDH_Euglenozoa Trypanosoma brucei Other Phylogenetic NA superkingdom:Eukaryota;order:Kinetoplastida;family:Trypanosomatidae;genus:Trypanosoma; 1.105940877 1.084405337 1.107776318 1.100336696 1.070607788 1.195393139 1.101027874 1.09921901 1.105115092 1.109878767 1.091098243 1.166117196 1.090867195 1.098836039 1.0983869 1.095150209 1.124212967 1.095318779 254462773 dmdA Rhodobacterales bacterium HTCC2083 Sulfur DMSP degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 0.811129046 0.818737102 92439964 limeh Mycobacterium sp. KMS Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 0.966800661 1.00355098 0.901389111 0.922862872 0.902397642 0.991426824 0.888714998 0.864116771 0.966059178 0.953591157 0.906696521 0.929276222 0.868666872 0.901084543 0.875436312 0.976894172 0.964311906 261354650 cutinase Verticillium albo-atrum VaMs.102 Carbon Cycling Carbon degradation Cutin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticilium;species:Verticillium albo-atrum; 1.347945328 1.320283892 1.302331218 1.348582809 1.301546512 1.32130119 1.305191127 1.318299404 1.31549863 1.297071054 1.293644445 1.316950042 1.27835707 1.270867708 1.260626147 1.322274585 1.339957347 1.275797871 159185940 nirb Agrobacterium tumefaciens str. C58 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium fabrum; 0.990369705 0.915703613 0.960047084 0.975183746 0.90780424 1.008157478 0.840227726 0.861127927 0.981547603 0.893222141 0.918326744 1.017200425 0.880810003 0.877276841 0.931275074 0.876449923 0.949875739 0.89964117 119774539 cellobiase Shewanella amazonensis SB2B Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella amazonensis; 0.849561501 0.848386308 0.848138777 0.854974931 0.86140704 0.800985572 0.859409326 0.889975818 0.807669968 0.809911287 0.79904279 0.844441395 0.845507822 0.863329282 208605292 hao Candidatus Brocadia sp. enrichment culture clone HZO4 Nitrogen Nitrification NA superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;genus:Candidatus Brocadia; 0.935660331 0.929912886 0.901114188 0.919555443 0.90472992 0.968919567 0.938178474 0.965310912 0.937138243 0.979880023 0.921967809 0.883391001 0.907779003 0.936425536 0.825667137 0.900550584 0.933788569 0.981511453 320160133 CsoS1_CcmK Anaerolinea thermophila UNI-1 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Chloroflexi;class:Anaerolineae;order:Anaerolineales;family:Anaerolineaceae;genus:Anaerolinea;species:Anaerolinea thermophila; 0.885511251 0.767159534 0.818081994 0.795848625 0.815438637 27355563 atzd Bradyrhizobium japonicum USDA 110 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 0.950143477 0.830818907 0.902150131 0.88767957 0.857107957 0.811278709 0.819334819 0.862322555 0.905793818 0.869520386 0.862968439 0.903475111 0.87171592 0.850755714 0.823904197 0.855879187 0.910868363 0.889443069 223469554 rubisco marine magnetite-containing magnetic spirillum MMS-1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospira; 0.814099657 0.797603602 0.830056929 0.885418447 0.872690778 0.840327042 0.85811254 0.838599063 0.861915429 0.820168222 0.838500932 0.860126323 145595477 cellobiase Salinispora tropica CNB-440 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora tropica; 1.022632698 0.976344996 0.933009753 0.937957834 0.961020349 0.968850484 0.854601451 0.923759195 0.842331171 0.958517083 0.83334917 0.898763355 0.960093377 0.956840277 0.961170802 0.90857138 0.930812306 1.008863787 148832003 alkk Erythrobacter sp. SD-21 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter; 1.035365513 1.04500484 1.051663352 1.05970048 1.040914269 1.06239595 0.949233641 0.987401301 1.013454773 1.059091685 1.032260538 1.05529388 0.993719018 1.023327461 0.940110993 1.022073102 1.052138562 1.057595338 14389227 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.921389301 0.971997484 0.899717379 0.944515553 0.934146687 0.947423294 0.927560721 0.90775058 0.934272733 0.927456527 0.929773272 0.948689255 0.94275394 0.907433335 0.944237977 0.915219561 0.931501452 1.2369603 74318053 fccab Thiobacillus denitrificans ATCC 25259 Sulfur Sulfide Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus;species:Thiobacillus denitrificans; 0.983085606 0.976000184 0.998651014 1.022547187 0.946021454 0.994451455 0.97409298 0.990584089 0.985758247 0.996707332 1.008115034 1.001663447 0.940932334 0.978121333 0.943500347 0.957471007 1.004227087 1.025516935 340028807 rubisco Paracoccus sp. TRP Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus; 0.988683279 0.985365196 0.980172013 1.000901986 1.019379934 1.017327475 1.012420507 0.984061478 1.01889623 1.001386448 1.010040009 0.989852184 1.003309763 0.967512482 0.953045915 0.976759248 1.024283317 1.015036029 158332178 ppx Azorhizobium caulinodans ORS 571 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Azorhizobium;species:Azorhizobium caulinodans; 1.200907956 1.16964145 1.169016992 1.197439754 1.154089635 1.211083266 1.154291668 1.172557356 1.186210806 1.155905451 1.162362287 1.191503714 1.135609123 1.13717654 1.121499822 1.16618366 1.180192002 1.162265626 84778733 terc Sodalis glossinidius str. 'morsitans' Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Sodalis;species:Sodalis glossinidius; 0.873093463 0.863034256 0.92307833 0.88231912 0.880330989 0.842774128 0.884509583 0.916580476 0.873681839 0.848955753 0.931426472 0.859113014 0.829220223 0.84888831 0.869536888 0.813874453 114324589 chitinase Lysobacter enzymogenes Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Lysobacter; 1.21191309 1.231118966 1.167246515 1.202071111 1.175384358 1.175584556 1.172917289 1.161071526 1.186693148 1.188705457 1.147869651 1.196671063 1.143273838 1.135528043 1.117030971 1.163821074 1.191000288 1.190850011 238709661 acetylglucosaminidase Yersinia rohdei ATCC 43380 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia rohdei; 0.801781738 0.791025427 0.856540936 0.839638128 302867463 amyA Micromonospora aurantiaca ATCC 27029 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Micromonospora;species:Micromonospora aurantiaca; 1.288475251 1.275528397 1.274834381 1.275293047 1.264284484 1.301868924 1.261009278 1.271285099 1.248385839 1.247501105 1.275867297 1.260450479 1.257677456 1.23830763 1.267470769 1.246332004 1.292755495 1.252562386 34557165 arra Wolinella succinogenes DSM 1740 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Wolinella;species:Wolinella succinogenes; 0.820072593 0.82615518 0.824790058 0.875808346 0.882081792 0.824920756 0.865287526 0.839905455 0.829799421 0.83129343 0.818940347 0.817786601 0.847273535 0.794126616 0.828971591 339282945 mnp Polyporus brumalis Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Polyporaceae;genus:Polyporus; 0.825753027 0.851954548 0.841818776 0.866088205 0.832844695 0.806179515 0.868023566 0.865740652 223470338 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.121981214 1.131729154 1.070867612 1.080035361 1.066941369 1.079783222 1.059979047 1.081396998 1.081161242 1.086196079 1.102790138 1.099204549 1.056293814 1.040960731 1.012627784 1.065817318 1.08495114 1.115423883 336030213 amyA Mesorhizobium opportunistum WSM2075 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium opportunistum; 1.02757273 0.992874171 1.069384037 1.047998729 1.031390522 0.990908516 0.995893357 1.007905768 1.013310629 0.995883855 0.987159615 1.032951703 0.970795917 0.955158118 0.943452615 0.946983495 1.043647545 0.999658138 189336037 hbh Burkholderia multivorans ATCC 17616 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 1.136525895 1.088644641 1.069255244 1.097087418 1.083818112 1.103890224 1.103594674 1.098961503 1.11861556 1.086343989 1.061249805 1.100316343 1.082061113 1.088307022 1.063261521 1.091948925 1.103481911 1.102247959 373252491 pme Nesterenkonia sp. F Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Nesterenkonia; 0.968507647 0.998105947 0.946980264 0.98427578 0.967867653 0.955595647 0.978533285 0.995021873 1.02034053 0.977324627 0.984611311 0.952647146 0.923044254 1.027525407 1.017564023 0.980987912 320590604 rgl Grosmannia clavigera kw1407 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Ophiostomatales;family:Ophiostomataceae;genus:Grosmannia;species:Grosmannia clavigera; 0.874733819 0.787317851 0.849669448 0.870090142 0.864941005 0.848936447 0.863733599 0.849836748 0.878217456 0.879293906 0.86505559 0.897431704 0.823324825 0.832948035 0.800112417 0.832122454 0.876204839 0.891268863 126035161 phenol_oxidase uncultured fungus Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi; 0.977797202 0.813224275 332298259 acetylglucosaminidase Treponema brennaborense DSM 12168 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema brennaborense; 1.13539894 1.111268709 1.11675544 1.144312191 1.11025217 1.117511675 1.100031439 1.1405062 1.098672604 1.069312419 1.086412073 1.086666382 1.104172106 1.049200774 1.047754495 1.086670016 1.153065893 1.076560247 306517127 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.945636372 0.87350678 0.89565822 1.024684933 0.896185179 0.857053596 0.968114927 0.890899645 1.01630518 0.869494637 0.899763123 0.869959768 0.950580695 0.890101261 73544802 rubisco uncultured soil bacterium Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria; 0.889866118 0.811761319 0.810253999 0.864730901 0.875689191 0.851424444 0.802011898 0.814941135 0.81593793 0.868521877 0.858857683 270513355 acetylglucosaminidase Streptosporangium roseum DSM 43021 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 1.176825194 1.070520277 1.139912274 1.157707703 1.11296844 1.161103175 1.16415485 1.157678206 1.141669121 1.117819149 1.083740931 1.107015811 1.085228393 1.066205484 1.081200688 1.069398656 1.137447732 1.123314584 111615554 ppx Verminephrobacter eiseniae EF01-2 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 0.99935056 0.980607895 0.883378319 0.924019614 0.880884577 0.953120667 0.874970652 0.894531837 0.96398108 0.958631617 0.945683473 0.930446406 0.925998022 0.884324791 0.897788628 0.896340938 0.952653572 0.952002602 63029766 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.778554238 0.856788856 0.862149856 0.866744412 0.870703149 0.872713147 375092110 cda Helcococcus kunzii ATCC 51366 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XI. Incertae Sedis;genus:Helcococcus;species:Helcococcus kunzii; 0.905118637 0.866671862 0.941350674 0.95444946 0.914074712 0.902391855 0.85712409 0.906827992 0.952479249 0.885196825 0.916566801 0.976704115 0.88467939 0.878598948 0.879706196 0.95825177 0.952021428 0.860844134 332289076 ppx Gallibacterium anatis UMN179 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Gallibacterium;species:Gallibacterium anatis; 0.812234339 0.869154267 0.837513743 0.793346109 0.877779256 0.786016677 0.841477727 0.856565064 0.841306664 0.855388915 0.781602641 0.889503287 0.851334945 0.858210237 0.813605499 0.886479181 386838818 poba Streptomyces hygroscopicus subsp. jinggangensis 5008 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces hygroscopicus; 0.933578688 0.979680786 0.948888572 0.979747592 0.966396407 1.009760067 0.951022742 0.895683425 0.950703189 1.003282839 0.980754457 0.976656314 0.950325099 0.979975383 0.929712075 0.979847207 0.941238192 1.036652315 229829049 fthfs Shuttleworthia satelles DSM 14600 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Shuttleworthia;species:Shuttleworthia satelles; 0.868536279 0.830769789 0.916491339 0.903593618 0.838546076 0.859370925 0.829895331 0.918590485 0.823677353 0.808947595 0.865205522 0.829835845 0.869722683 0.904701239 0.845470598 0.942763278 0.927051931 116804528 nasa uncultured prokaryote Nitrogen Assimilatory N reduction NA 0.827158979 0.80304288 0.788899805 0.819504407 0.835169569 0.819036838 0.837617394 0.833788953 258558007 pcpe Nakamurella multipartita DSM 44233 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nakamurellaceae;genus:Nakamurella;species:Nakamurella multipartita; 0.897435296 0.972968042 0.939285148 0.914510569 0.884633986 0.88520986 0.891368381 0.883311557 0.908188077 0.957987378 0.868966061 0.912941748 0.893896583 0.882185009 0.832766968 0.873825161 0.927551887 0.933783082 254487807 ppk Roseobacter sp. GAI101 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 1.036343763 1.095230067 1.030500191 1.057329741 1.035954232 1.054330206 1.045456469 1.033626469 1.061701075 1.071699734 1.04657985 1.07598143 1.014372135 1.00623939 0.986395521 1.008843124 1.072601102 1.078267837 26278782 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.916171704 0.939330192 0.944655474 0.917973196 0.932808897 0.972766556 0.950120064 0.924932912 0.922534307 0.922694963 0.927656073 0.937857777 0.932450887 0.906064744 0.914992743 0.882382497 0.955659478 0.916482934 237879075 cysJ Burkholderia glumae BGR1 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia glumae; 1.063873617 1.015339107 1.031976892 1.067529448 0.949217532 1.028143083 1.006689547 1.038581957 1.050804778 1.006332876 1.00514715 1.016413554 0.973718394 0.995593201 0.947230466 0.982317174 1.069325637 1.037454766 337749869 rgh Paenibacillus mucilaginosus KNP414 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 1.153972923 1.150814169 1.110137141 1.158175127 1.120358537 1.152112306 1.091043694 1.145469059 1.145082136 1.110832065 1.09853171 1.129316778 1.113524725 1.107588133 1.113825471 1.107727283 1.133919854 1.131094457 387870986 amyA Erwinia pyrifoliae DSM 12163 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia pyrifoliae; 0.920654157 0.856965497 0.976985574 0.869029438 0.948039132 0.827696626 0.943285859 0.919788369 0.811202713 0.93491104 0.954129193 0.956411213 0.891474795 0.839893939 0.904070695 0.939610525 375145954 xylanase Niastella koreensis GR20-10 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;genus:Niastella;species:Niastella koreensis; 0.917680447 0.873000949 0.912185019 0.940760278 0.966128056 0.932331731 0.954880655 0.930454163 0.928462594 0.943623406 0.965002423 0.956253999 0.892231528 0.946129786 0.936851873 0.918570504 0.914037368 0.942099351 146191339 mdlc Bradyrhizobium sp. ORS278 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 1.272165752 1.227975771 1.266201275 1.233516215 1.194785533 1.22381876 1.089674786 1.186394356 1.223453642 1.211202216 1.229586694 1.191495297 1.214746901 1.202374182 1.127301136 1.208337101 1.259256021 1.234280327 85717282 pchcf Nitrobacter sp. Nb-311A Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter; 0.927679413 0.95544326 0.961073448 0.947898556 0.920842197 0.967195747 0.932836309 0.805225596 0.935104847 0.977780963 0.898655322 0.863989039 0.866842258 0.87188294 0.840806008 0.877987596 0.957542929 0.974137038 363719142 arsc Acetobacteraceae bacterium AT-5844 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae; 0.776725309 0.838692267 0.831513062 0.885346711 0.81988538 0.884880707 0.861490643 0.819645395 0.850119902 54016529 xylg Nocardia farcinica IFM 10152 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 1.262304036 1.225569799 1.230940511 1.218809101 1.208331609 1.246940364 1.19995225 1.219240824 1.203173358 1.221006484 1.208805185 1.220875708 1.195289484 1.198871635 1.158766058 1.185287328 1.232284344 1.23533639 408749475 nhh Rhizobium mesoamericanum STM3625 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium mesoamericanum; 0.808477714 0.866880366 0.8069879 0.843855754 0.870788723 0.82091472 0.841889493 0.877988697 0.851235073 0.863978753 0.824498468 0.816855115 0.860449962 0.865922408 0.885904767 126355270 urec Pseudomonas putida GB-1 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 0.933247093 0.988104841 0.934921493 1.020775177 0.923271815 0.936098664 0.960410524 0.94908038 1.113739125 0.928694252 0.943061661 1.013491064 0.908210412 0.958481159 0.901480386 1.008674478 0.962046172 0.915657942 385738489 amyA Bradyrhizobium sp. WSM1253 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.853878572 0.862087125 0.875609676 0.868976525 0.844496755 0.880333111 0.835302607 0.856968052 0.851551765 0.853177153 0.817001734 0.822235354 0.816292025 0.833384878 0.895240811 0.885492921 219996663 dsra Thioalkalivibrio sp. HL-EbGR7 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio;species:Thioalkalivibrio sulfidophilus; 0.875676472 0.940838647 0.832403987 0.83107663 0.858811496 0.861882178 0.853650485 0.829925315 0.931084864 0.859529829 0.792289517 0.881986429 0.914068894 260645477 pcpe Streptomyces scabiei 87.22 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces scabiei; 1.071655695 1.120828109 0.991894699 1.071999878 1.04919162 1.123246897 1.052942764 1.067408347 1.055393726 1.083100142 1.066788394 1.094415649 1.044702726 1.060600596 1.04201626 1.066299976 1.062479501 1.098829875 357412134 hyaluronidase Streptomyces flavogriseus ATCC 33331 Carbon Cycling Carbon degradation hyaluronic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces flavogriseus; 0.923486632 0.987453483 0.904177223 0.932365964 0.931504887 0.95712103 0.875813257 0.924589125 0.922404561 0.899171021 0.905973597 0.923828361 0.888901099 0.906451788 0.873375448 0.86736684 0.949137019 0.943542192 158521015 aps_apra Desulfococcus oleovorans Hxd3 Sulfur adenylylsulfate reductase NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfococcus;species:Desulfococcus oleovorans; 0.856512217 0.84261397 0.913054288 0.870260727 0.792015296 0.834680666 0.784885005 45386221 narg unidentified bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.992399014 0.997994452 1.057533358 0.985173959 0.987631233 0.997168103 1.012492529 0.981784839 0.999736554 1.009684082 1.001133194 1.014622621 0.970528681 0.983408129 0.960494948 0.938511675 0.95940355 1.038538963 251837809 chitinase Bacteroides sp. 1_1_6 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides; 0.778421976 0.819013851 374991450 amyA Streptomyces bingchenggensis BCW-1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces bingchenggensis; 1.196629924 1.179942985 1.178463995 1.187404852 1.111892834 1.182947914 1.126052652 1.15297246 1.15730854 1.152454412 1.204566677 1.156426416 1.100628494 1.136469648 1.070938633 1.108360927 1.187583842 1.162365849 214037379 dmdA marine gamma proteobacterium HTCC2148 Sulfur DMSP degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 0.850344909 0.891035492 0.929606132 0.902477349 0.87819486 0.873964649 0.882589133 0.978617945 0.947869691 0.840689552 0.836048788 0.900193013 0.879663134 0.874075097 0.895816212 0.858107756 0.851400599 0.932594571 73749251 rd Dehalococcoides sp. CBDB1 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 0.985109508 0.932607597 0.908920056 0.978295572 0.910021071 0.947008388 0.887525517 0.959573161 0.959530744 0.929865221 0.93888417 0.946235633 0.915721094 0.944629232 0.889562067 0.909855449 0.950005494 0.889714299 333823700 amyA Desulfotomaculum kuznetsovii DSM 6115 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum kuznetsovii; 0.802100596 0.801589408 0.86116432 0.819554383 0.777856386 0.832845037 0.870597677 0.838186279 0.79250618 116193471 phospholipase_C_fungi Chaetomium globosum CBS 148.51 Carbon Cycling Carbon degradation Phospholipids superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 0.923849715 0.97766568 0.936072557 0.945340478 0.967139952 0.971799351 0.927284137 0.922889512 0.970370528 0.968254142 0.941974736 0.944214602 0.957624385 0.931639659 0.961828707 0.926508367 1.019277157 0.953183903 212224602 cda Thermococcus onnurineus NA1 Carbon Cycling Carbon degradation Starch superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Thermococcus;species:Thermococcus onnurineus; 1.002351053 0.99895188 0.976180861 1.012139597 0.99216576 0.968395631 1.048019033 0.989746742 1.030280469 0.984801661 0.98425024 0.986287881 0.988836295 0.965685663 0.949564662 0.964578883 0.982472114 0.997559415 350552946 tktA Thiorhodospira sibirica ATCC 700588 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thiorhodospira;species:Thiorhodospira sibirica; 1.020000815 0.940477328 0.988294314 1.060301392 0.973876384 0.962596231 0.988325373 1.001146431 1.022707958 0.996666724 0.946285539 1.010092201 0.952269673 0.9162712 0.935898542 0.914454669 0.99603266 0.974589613 99030609 ppk uncultured bacterium Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria; 0.953140157 0.986928963 0.898956717 1.006408531 0.91371632 0.989669252 0.937539665 0.97913763 0.963954675 0.966258916 0.935543426 0.966644742 0.916756048 0.90447755 0.873240824 0.910192827 0.968112315 358449371 fthfs Marinobacter manganoxydans MnI7-9 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter manganoxydans; 0.944870185 0.955238787 0.955832056 0.960311894 0.925340774 0.971511248 0.911078528 0.902199885 0.904099883 0.934243699 0.935663916 0.939069954 0.899397624 0.928887012 0.884028946 0.908814507 0.943585485 0.91537318 375752146 amyA Gordonia polyisoprenivorans VH2 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia polyisoprenivorans; 0.79063321 0.872023773 0.898030088 0.878763615 0.906575081 0.886200659 0.881686942 0.850165926 0.86243789 0.861931458 0.933155981 0.855624082 0.835646489 0.804601643 0.798399387 0.8576623 0.883606724 329927607 pectinase (pectate_lyase) Paenibacillus sp. HGF5 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 0.785800999 0.787042661 0.858086806 0.832491918 0.807383529 0.816742609 294898642 actin_Perkinsea Perkinsus marinus ATCC 50983 Other Phylogenetic NA superkingdom:Eukaryota;order:Perkinsida;family:Perkinsidae;genus:Perkinsus;species:Perkinsus marinus; 1.135364792 1.053326362 1.054084392 1.051937721 1.089162406 1.092018955 1.078068477 1.067268325 1.049206773 1.025052266 1.076256952 1.051919921 1.003338506 1.015854245 1.07739047 1.036373279 1.069159719 1.10949266 254947212 xylanase Dyadobacter fermentans DSM 18053 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Dyadobacter;species:Dyadobacter fermentans; 0.800354383 0.857692277 316935108 cellobiase Rhodopseudomonas palustris DX-1 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 1.07257168 1.029970209 1.04548173 1.054781787 1.002556791 1.035705412 0.966190218 1.023253042 1.029321018 1.019215964 1.015528097 1.019874918 0.969568678 0.995535634 0.951822347 1.004318571 1.038445196 1.047966526 145222277 urec Mycobacterium gilvum PYR-GCK Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 1.134280383 1.052338722 1.068158075 1.063210065 1.078257939 1.056710575 1.08671816 1.125324354 1.117050991 1.024861717 1.018626401 1.062901081 1.05447966 1.020395948 0.976466123 1.053956024 1.081867572 1.050039858 240172374 cutinase Mycobacterium kansasii ATCC 12478 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium kansasii; 1.054750906 0.99157516 1.006157743 1.00222467 0.940075288 1.023251725 0.956475843 0.957570501 0.981180172 1.028207681 0.997281765 0.993496993 0.974381749 1.024548122 0.922983939 0.982008974 1.026812053 1.041490813 326950267 amyA Pseudonocardia dioxanivorans CB1190 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Pseudonocardia;species:Pseudonocardia dioxanivorans; 1.065171797 1.063241466 0.956357586 1.037037916 0.993874604 1.070412003 0.976979445 1.0390136 1.010642267 1.042049584 0.972723486 0.997314338 0.990331649 1.012238654 0.963968298 0.999140676 1.0079106 1.051639809 293631898 nbza Pandoraea sp. BD-33 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Pandoraea; 0.952460458 0.950794375 0.949411988 0.951541004 0.917935173 0.932554193 0.925808122 0.918789225 0.928624791 0.917413866 0.963698944 0.933741906 0.915842996 0.908597794 0.901181739 0.923255035 0.92052468 0.930917369 379710829 ppx Nocardia cyriacigeorgica GUH-2 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia cyriacigeorgica; 1.171919817 1.181897902 1.12735892 1.219129229 1.173833578 1.237950335 1.149622238 1.152703231 1.168835066 1.157519518 1.154748455 1.174003014 1.132677207 1.120439498 1.114190147 1.141548721 1.191136016 1.181418049 154156025 chnb Parvibaculum lavamentivorans DS-1 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Parvibaculum;species:Parvibaculum lavamentivorans; 0.903790242 0.87947655 0.842567223 0.887692522 0.883908485 0.825546735 0.842289639 0.911810028 0.910212277 0.894013881 0.869648701 0.854959367 0.87315937 0.88831394 0.904113018 0.859957788 119671542 pgk Azoarcus sp. BH72 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 0.808620437 0.865319984 0.781093476 0.774830377 0.827548461 299064389 acetylglucosaminidase Erwinia billingiae Eb661 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia billingiae; 0.805930619 0.826458788 0.805248355 0.796700525 0.811431887 0.795968714 0.826504779 336004429 cda Lachnospiraceae bacterium 3_1_57FAA_CT1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae; 0.897747906 0.908451808 0.908714569 0.900329925 0.895149091 0.893451893 0.905072392 0.886097985 0.916495882 0.890413677 0.901225398 0.862064183 0.846502063 0.894070673 0.85572969 0.843203094 0.920399078 0.931957869 350530324 ppx Vibrio rotiferianus DAT722 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio rotiferianus; 0.841775644 0.921390033 0.877038508 0.844887377 0.865314623 0.888735181 0.817829852 0.821762989 0.846504843 0.841872929 0.8176776 0.810981056 0.875906946 0.83365592 0.887336097 0.91646487 301795973 cysI gamma proteobacterium HdN1 Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 0.907337776 0.901707948 0.890410757 0.943070447 0.871807956 0.897003404 0.875421809 0.874690624 0.876204759 0.976780157 0.878193188 0.891059622 0.831997292 0.87894293 0.847479943 0.854656958 0.864713292 0.937567056 158114234 tfda Frankia sp. EAN1pec Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 0.92468868 0.912562455 0.902816834 0.898117067 0.852625064 0.891312321 0.892031269 0.916872279 0.954780388 0.907439619 0.84426181 0.848055223 0.794115366 0.879846303 0.780798721 0.840857826 0.880602346 0.891478756 62390048 catechol Corynebacterium glutamicum ATCC 13032 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium glutamicum; 1.10794636 1.14210693 1.087589642 1.078107616 1.084954282 1.115462121 1.08891527 1.08755312 1.086503446 1.122309002 1.061917619 1.074328877 1.047869421 1.075639033 0.998750748 1.052817613 1.090705952 1.100727649 386759710 amyA Bacillus sp. JS Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 1.209363489 1.20207324 1.144454032 1.200616049 1.16436734 1.19347766 1.141752204 1.153933496 1.159218658 1.194090735 1.143183853 1.183232139 1.147298468 1.147611796 1.119131849 1.180787072 1.208624765 1.20840288 115442834 tfth Aspergillus terreus NIH2624 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 1.087872548 1.07722482 1.04146567 1.048295208 1.051277545 1.031471692 1.021933048 1.063380339 1.05963049 1.034536227 1.046620237 1.078158388 1.013871372 0.992800178 0.987609451 1.008460946 1.060514643 1.066692289 51891546 chrr Symbiobacterium thermophilum IAM 14863 Metal Homeostasis Chromium Detoxification superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XVIII. Incertae Sedis;genus:Symbiobacterium;species:Symbiobacterium thermophilum; 0.770063134 0.823686206 0.822576651 0.877231183 0.791128804 0.816297003 0.76160867 0.81098906 0.850781943 148272061 xyla Clavibacter michiganensis subsp. michiganensis NCPPB 382 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Clavibacter;species:Clavibacter michiganensis; 1.075788891 1.015033176 0.974329569 1.033285388 1.019091978 1.03259047 1.020962645 1.010474699 0.993566116 0.993597798 0.989396819 1.022368555 0.950578358 0.934453299 0.940687968 0.987267985 0.989998871 1.060528897 83316878 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.103773518 1.028364284 1.030325283 1.063655487 1.094656172 1.123451698 1.175189423 1.023413439 1.018508562 1.153649152 1.14707569 1.089422261 1.14672232 1.032397502 0.992377939 1.154362661 1.115483483 1.125840382 120405856 mhpa Mycobacterium vanbaalenii PYR-1 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 1.006380028 0.967269253 0.954601057 0.974983943 0.959276073 0.962901063 0.909990926 0.980932944 0.95638463 0.910094939 0.906829209 0.987707114 0.907599497 0.845928957 0.875788428 0.977761317 0.978261339 0.945938254 283481834 mcra uncultured methanogenic archaeon Carbon Cycling Methane Methanogenesis superkingdom:Archaea;phylum:Euryarchaeota; 0.862076904 0.799294775 0.781401347 0.905798551 171184896 suc_CoA_red_DiC4HB Thermoproteus neutrophilus V24Sta Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum neutrophilum; 0.901191694 0.936757595 0.883606931 0.854377372 0.905345001 0.908988601 0.86128484 0.870364626 0.784686349 0.973253913 0.81246984 0.907128824 0.873327553 0.879169088 0.952118588 0.864452034 0.825133059 0.942794769 27377730 alkk Bradyrhizobium japonicum USDA 110 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 0.901566958 0.880539918 1.003082608 0.950004189 0.865461575 0.897612455 0.904096597 0.914791392 0.924728713 0.933464193 0.91743865 0.895746372 0.819062233 0.883705552 0.795251961 0.840521067 0.964105283 0.872750193 209517820 xyla Burkholderia sp. H160 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 1.309074567 1.268905943 1.265666632 1.301852147 1.281457532 1.303097566 1.259837704 1.273064513 1.273694916 1.25683602 1.260635506 1.289603717 1.290921741 1.23948174 1.247949732 1.277847747 1.314199321 1.241366877 394761607 terc Actinomyces massiliensis F0489 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces massiliensis; 1.010380682 1.063629181 1.043352238 1.076251914 1.07605282 1.054930404 1.059571255 1.009476333 0.996362213 1.045684859 1.010641853 1.031418377 1.074477158 1.010348608 0.998350441 1.03518824 1.038256909 1.039351208 371546220 acetylglucosaminidase Streptomyces coelicoflavus ZG0656 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicoflavus; 0.811517532 0.781971539 0.828028713 0.789811784 0.855524889 0.798759138 307596192 aps_apra Vulcanisaeta distributa DSM 14429 Sulfur adenylylsulfate reductase NA superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Vulcanisaeta;species:Vulcanisaeta distributa; 0.874478672 0.839720732 0.899915039 0.912192267 0.809050385 0.844954192 0.850239274 0.815416285 0.825207469 0.883064293 0.864267834 313107588 GAPDH_Calvin Pseudomonas aeruginosa 39016 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 1.118926643 1.151667409 1.085981127 1.136849593 1.189953926 1.177051091 1.197011254 1.132655613 1.137368905 1.181091609 1.138744276 1.101669506 1.174696129 1.121160268 1.04608156 1.119827399 1.14803507 1.131919418 372279281 FBPase Oceanicola sp. S124 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola; 0.880992029 0.881060488 0.860830353 0.935166879 0.881332167 0.931978867 0.890507594 1.018768051 0.993230667 0.851576007 0.819195213 0.860586787 0.865905078 0.929439244 0.810776963 0.943170525 0.981582698 399230845 xyll Mycobacterium smegmatis str. MC2 155 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 0.794834749 0.800862016 0.835401076 0.841119444 0.820052764 0.850846967 0.853853769 260087302 amyA Streptomyces flavogriseus ATCC 33331 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces flavogriseus; 1.21167118 1.190348408 1.19358314 1.166502849 1.185890242 1.21167373 1.199622711 1.151985678 1.171230697 1.207284297 1.185581753 1.144610862 1.12123724 1.139057331 1.0836372 1.154514991 1.196773634 1.183991987 111026996 cdh Rhodococcus sp. RHA1 Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 0.83418787 0.835664048 0.8342456 0.836883086 0.841399914 0.82774155 0.845789062 0.861547606 308213049 alkb uncultured bacterium Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria; 1.091778607 1.085577073 1.095211023 1.086978223 1.059079143 1.085229481 1.028881756 1.070228207 1.053410747 1.071353514 1.054748726 1.068932402 1.038691439 1.037521179 1.046951193 1.050377831 1.091730355 1.082226756 29136509 ppk Salmonella enterica subsp. enterica serovar Typhi Ty2 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 1.313706925 1.266817661 1.267409014 1.297557168 1.286031046 1.303272355 1.28358476 1.302618884 1.285712345 1.276724974 1.28238037 1.32494058 1.247127796 1.243437334 1.239624034 1.298299508 1.269634009 1.24248534 256007525 ccmL Acidimicrobium ferrooxidans DSM 10331 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Acidimicrobiales;family:Acidimicrobiaceae;genus:Acidimicrobium;species:Acidimicrobium ferrooxidans; 1.568964132 1.562946655 1.541532777 1.52280425 1.525089492 1.568934555 1.519983499 1.528190074 1.526732305 1.530408784 1.543345996 1.532809941 1.500640833 1.465826637 1.497541724 1.513887475 1.549625259 1.530106131 359756510 xyla Aggregatibacter actinomycetemcomitans RhAA1 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Aggregatibacter;species:Aggregatibacter actinomycetemcomitans; 0.820411018 0.829427994 0.82623156 0.817468159 0.87999131 0.831256027 0.843930781 0.839954024 0.794783414 0.820550003 0.794517628 0.825904218 0.809389946 0.87151392 225041086 amyA Clostridium asparagiforme DSM 15981 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium asparagiforme; 1.239860636 1.222991602 1.199643366 1.213205144 1.173440761 1.218826143 1.164643849 1.175865198 1.198367983 1.195205844 1.186379458 1.200117282 1.156282699 1.159129059 1.187555516 1.155784576 1.22365386 1.220181985 209963731 alkb Rhodospirillum centenum SW Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum centenum; 1.524230743 1.481109491 1.49205992 1.479588823 1.469366504 1.511766765 1.463683727 1.485804711 1.472604519 1.4806115 1.475514914 1.469326078 1.460079222 1.468113739 1.4672329 1.480534707 1.478993036 1.47394556 269125899 rubisco Thermomonospora curvata DSM 43183 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Thermomonosporaceae;genus:Thermomonospora;species:Thermomonospora curvata; 1.285643115 1.265360728 1.250705439 1.287018751 1.270141181 1.251926757 1.226453506 1.2367272 1.266645651 1.258105842 1.270263656 1.276728789 1.263779912 1.20982385 1.222487983 1.235103598 1.277977372 1.202301967 326954474 xamo Pseudonocardia dioxanivorans CB1190 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Pseudonocardia;species:Pseudonocardia dioxanivorans; 1.150983091 1.16342212 1.128303015 1.155587088 1.093082468 1.159685428 1.114467713 1.143314196 1.133255847 1.163903282 1.134982752 1.146450991 1.096385908 1.088090435 1.07191953 1.084118236 1.173689536 1.145824935 387866541 terc Edwardsiella tarda FL6-60 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Edwardsiella;species:Edwardsiella tarda; 1.182972546 1.146792059 1.166161718 1.151986864 1.115838743 1.13107157 1.084649436 1.145606404 1.123735432 1.147315387 1.157448467 1.130329928 1.129327077 1.143353519 1.107619682 1.129570063 1.156994119 1.121375698 167350382 cysJ Caulobacter sp. K31 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 0.961739095 0.96514488 0.991796297 0.996812191 0.993789502 0.983455193 1.013707701 1.022338122 1.00576878 0.996852039 0.978202684 0.967944738 0.878328889 0.874441211 0.875616438 0.883246474 0.96375564 0.964548851 68510348 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.3330481 1.317154179 1.314533574 1.29762432 1.303624251 1.339035083 1.296479618 1.302299069 1.280717005 1.300512839 1.301782113 1.294299703 1.284495285 1.289759554 1.285010634 1.33180466 1.318765406 1.315825431 375109839 amyA Alishewanella jeotgali KCTC 22429 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alishewanella;species:Alishewanella jeotgali; 0.844270065 0.854720977 0.882112249 0.87199821 0.88697551 0.848633974 0.887239145 0.902217471 0.84143267 0.832163739 0.890098075 0.853557921 0.849111303 0.893406685 365879472 mdlc Bradyrhizobium sp. ORS 375 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 1.105127246 1.088505662 1.062435524 1.118137519 1.068811535 1.099327427 1.097897931 1.121709843 1.093821219 1.091752365 1.061847061 1.099190554 1.043946431 1.058900467 1.020881633 1.048650813 1.073794115 1.084384649 302475073 nagg Streptomyces griseoflavus Tu4000 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseoflavus; 1.153841355 1.133770894 1.118007027 1.138494674 1.154559168 1.138560988 1.139656794 1.130373853 1.130535972 1.132360688 1.119630389 1.145978333 1.092422816 1.103244985 1.037878038 1.080741999 1.117501593 1.090009559 357216172 ccmL Desulfosporosinus orientis DSM 765 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfosporosinus;species:Desulfosporosinus orientis; 0.823247889 0.838266145 386385908 mannanase Streptomyces tsukubaensis NRRL18488 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces tsukubaensis; 1.474332619 1.454678715 1.416459432 1.436378537 1.399350017 1.467409176 1.373217836 1.408779513 1.402969896 1.422947706 1.410147243 1.418797132 1.396046504 1.408894822 1.369953491 1.398506804 1.434548798 1.413488643 110679646 arsc Roseobacter denitrificans OCh 114 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter denitrificans; 0.846948444 0.806194477 0.862968205 0.865064843 0.837606618 0.885730182 0.88514805 0.809133931 0.796346054 0.852164793 0.778834284 0.803506807 0.856663441 0.850312648 328923077 amyA gamma proteobacterium IMCC3088 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 0.880660231 0.852311926 0.908482865 0.882718147 0.821667052 0.864834505 0.851276024 0.872465536 0.913815476 0.878057671 0.883924802 0.857113591 0.801761417 0.890505865 0.851820577 0.858412922 0.880507466 0.879025849 355674287 atza Clostridium citroniae WAL-17108 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium citroniae; 0.95158684 0.93625703 0.948499193 0.958369965 0.976399559 0.944921286 0.955432545 0.966721206 0.948790432 0.927677223 0.919517165 0.945229009 0.916940858 0.89378075 0.917882443 0.880209454 0.934162741 0.948858985 296255692 GAPDH_Calvin Methylosinus trichosporium OB3b Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylocystaceae;genus:Methylosinus;species:Methylosinus trichosporium; 1.170922646 1.25579635 1.14803176 1.177987262 1.148923142 1.181300287 1.147913658 1.165576486 1.120868604 1.149076711 1.153034735 1.156294547 1.143671638 1.132851694 1.097610879 1.131010216 1.17212852 1.14242728 206601892 aps_apra Leptospirillum sp. Group II '5-way CG' Sulfur adenylylsulfate reductase NA superkingdom:Bacteria;phylum:Nitrospirae;class:Nitrospira;order:Nitrospirales;family:Nitrospiraceae;genus:Leptospirillum; 0.795345536 0.78126513 196185118 arsc Brevundimonas sp. BAL3 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Brevundimonas; 0.895166562 0.881693691 0.859669035 0.952534147 0.861949726 0.818887894 0.862772534 0.870540825 0.861535178 0.838830726 0.867448761 0.848842592 0.835141718 0.874044903 0.909422365 0.842813085 170943984 endochitinase Podospora anserina S mat+ Carbon Cycling Carbon degradation Chitin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Lasiosphaeriaceae;genus:Podospora;species:Podospora anserina; 1.252018684 1.225017437 1.231602237 1.256363231 1.248743231 1.251498281 1.255085427 1.270982841 1.240349762 1.210792168 1.23516168 1.250379168 1.242762247 1.195505914 1.193786369 1.220188976 1.266201118 1.2148066 315001616 aoxb uncultured beta proteobacterium Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria; 1.054691505 1.035039993 1.046871374 1.059907047 1.0426638 1.057065715 1.047645037 1.039287514 1.039787424 1.059062167 1.028607029 1.065605565 1.042090134 1.020460213 1.019116189 1.054513541 1.078112856 1.034286474 340358671 amyA Actinomyces sp. oral taxon 448 str. F0400 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 448; 1.148192278 1.095600811 1.158310682 1.150653298 1.131047954 1.239076594 1.139745585 1.147966603 1.147061475 1.1410164 1.127969909 1.120140366 1.103158069 1.105544534 1.073649225 1.090405255 1.151882805 1.123271141 322434253 RgaE Granulicella tundricola Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Granulicella; 1.189661129 1.154453379 1.184713846 1.161209494 1.136511411 1.110785485 1.106189705 1.139866605 1.169963701 1.178663248 1.152352209 1.165610996 1.153344226 1.134044987 1.107809147 1.131184823 1.187723698 1.157121272 332662238 amyA Haliscomenobacter hydrossis DSM 1100 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Saprospiraceae;genus:Haliscomenobacter;species:Haliscomenobacter hydrossis; 1.003468621 1.02965734 1.023157583 0.959928814 1.003315554 1.013510379 0.956473457 0.949281206 0.98864005 0.995196713 0.971704296 0.995050709 0.926029274 0.984643498 0.924895705 0.972207022 0.98930639 1.019140704 13676306 cellobiase Actinomyces naeslundii Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces; 0.853158628 0.800976841 0.826899008 0.839809019 0.838782893 0.79129058 0.845130771 0.831026831 76058364 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.025167267 1.071396496 1.037788597 1.058285977 1.056021843 1.062358043 1.040086984 1.053430564 1.020953474 1.042224534 1.008839813 1.064213003 0.972491134 0.997804939 0.959413474 0.9989128 1.020126391 1.038965446 91696580 tktA Polaromonas sp. JS666 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 0.960410239 0.960321642 0.930641114 0.977584211 0.964317198 0.964823718 1.01027413 0.973935999 0.976355533 0.957165278 0.943397581 0.986169467 0.954585667 0.968520566 0.961917416 0.993637228 0.978820175 0.947114495 303296208 ppx Ahrensia sp. R2A130 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ahrensia; 1.123217852 1.077170493 1.144696397 1.111663994 1.126193611 1.143096778 1.130706019 1.125854951 1.131332687 1.097002938 1.120222251 1.114040333 1.051548592 1.029136917 1.04992819 1.044713191 1.087018115 1.083460523 67524167 ara Aspergillus nidulans FGSC A4 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 0.79395219 0.789585867 0.88227817 0.823447265 0.861643057 0.867984968 0.801408152 0.825515711 0.832581418 0.831790781 0.830961522 0.831042251 296021402 amyA Cellulomonas flavigena DSM 20109 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas;species:Cellulomonas flavigena; 1.258953364 1.239421234 1.218901596 1.229776558 1.213012179 1.233202625 1.201228102 1.216614505 1.219126086 1.225140466 1.212159716 1.235246491 1.224433641 1.172202108 1.195760537 1.170478724 1.237705811 1.212763108 119955739 cutinase Mycobacterium vanbaalenii PYR-1 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 1.176791235 1.155973284 1.133737008 1.187340164 1.139103394 1.174817433 1.156007682 1.151533313 1.156685505 1.150980498 1.162234049 1.192166446 1.125408923 1.105302208 1.096537374 1.125706036 1.200737293 1.154846554 87285182 Sir Blastopirellula marina DSM 3645 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Blastopirellula;species:Blastopirellula marina; 1.000387553 0.975591951 0.97680184 1.029932075 0.97694221 0.967034593 0.990587037 0.9714473 0.981060078 0.95771708 0.972886916 0.992343782 0.980351279 0.962123735 0.966817144 0.990898042 0.980425116 0.951699351 299527683 rd Dehalogenimonas lykanthroporepellens BL-DC-9 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidia;genus:Dehalogenimonas;species:Dehalogenimonas lykanthroporepellens; 0.909920724 0.918848397 0.960655245 0.961870291 0.946353365 0.962841942 0.934162073 0.894260048 0.980458993 0.921201092 0.930293009 0.958474269 0.899609138 0.925680193 0.895179666 0.917182315 0.923686422 0.949925779 163794837 pcag alpha proteobacterium BAL199 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 1.196025909 1.199776536 1.191902309 1.196943336 1.195662144 1.23877196 1.178775742 1.187230439 1.194229245 1.176546416 1.195514306 1.190019511 1.172384364 1.158493613 1.144749071 1.153924446 1.198079251 1.187157508 330960943 cysI Pseudomonas syringae pv. maculicola str. ES4326 Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 0.789240285 0.821149457 0.811968021 0.789549879 282899523 ccmL Cylindrospermopsis raciborskii CS-505 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Cylindrospermopsis;species:Cylindrospermopsis raciborskii; 1.180341881 1.115146327 1.169781597 1.172555933 1.141754445 1.210361063 1.236961548 1.170956107 1.183022224 1.171106747 1.176847202 1.173374635 1.191789021 1.148432672 1.07854015 1.133711796 1.199428339 1.148920035 114570918 phytase Maricaulis maris MCS10 Phosphorus Phytic acid hydrolysis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Maricaulis;species:Maricaulis maris; 1.278178156 1.264837278 1.250902714 1.257914888 1.224094577 1.248495734 1.226567671 1.238538021 1.253946295 1.207255067 1.231596602 1.25997574 1.228221252 1.196384837 1.218042167 1.217425809 1.275557202 1.219542015 116067205 amyA Synechococcus sp. RS9916 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 1.102892781 1.044285541 1.079467777 1.113623112 1.079225854 1.075524333 1.102265026 1.084273758 1.100555081 1.06509248 1.092620102 1.100402865 1.032981808 1.050496726 1.063230863 1.06881006 1.070487777 1.067793407 153963034 sqr uncultured bacterium Sulfur Sulfide Oxidation NA superkingdom:Bacteria; 1.085301582 1.114105935 1.104021865 1.013678817 1.070582947 1.100047619 1.064244025 1.051050833 1.046105395 1.046655966 1.087520057 1.033780699 0.96387822 1.022641336 0.920467477 1.027271128 0.956081307 1.063157729 219722326 cysJ Stenotrophomonas sp. SKA14 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas; 0.934497352 0.950712384 0.860727913 0.915642398 0.890218341 0.946206781 0.869931322 0.883866404 0.889670721 0.877607829 0.837420471 0.869039948 0.865709198 0.865924633 0.858933884 0.876144546 0.953725588 0.925657952 366160705 mhpb Escherichia sp. TW09308 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia; 0.943050528 0.837152279 0.9135376 0.976410279 0.889864966 0.917541047 0.9387222 0.911593458 0.937814729 0.877759204 0.893360329 0.896323843 0.855147679 0.8135781 0.8236951 0.941111278 0.972011011 0.859529213 161380716 ppx Oceanibulbus indolifex HEL-45 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanibulbus;species:Oceanibulbus indolifex; 1.007983026 0.951881695 1.004313441 1.019357447 0.954362285 0.935670922 0.963644389 0.969078065 1.017432423 0.984064295 0.950234327 1.018790425 0.955019343 0.976944326 0.996089627 0.954192439 0.995606313 0.981281946 303293397 amyA Ahrensia sp. R2A130 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ahrensia; 0.811850652 0.935445867 0.85900056 0.935459064 0.816406999 0.864174349 0.824448784 0.830782324 0.851560943 0.868720054 0.90502045 0.820097684 0.825633013 0.791756869 0.840473077 159040073 bphF1 Salinispora arenicola CNS-205 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora arenicola; 0.866549302 0.838960669 0.82279621 0.83392176 0.816349119 0.801873657 0.810329475 0.803917139 0.827686126 0.826672084 0.850306469 183982912 cutinase Mycobacterium marinum M Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium marinum; 0.983860111 0.921542709 0.921088141 0.922974834 0.926335282 0.913915722 0.93344236 0.9553116 0.964179839 0.943402139 0.923269196 0.91957357 0.885323045 0.888452201 0.873834556 0.910251503 0.993084417 0.978310128 372012126 Sir Holophaga foetida DSM 6591 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Acidobacteria;class:Holophagae;order:Holophagales;family:Holophagaceae;genus:Holophaga;species:Holophaga foetida; 1.181364555 1.17426308 1.163829701 1.181010991 1.167533378 1.187770095 1.172677199 1.167224295 1.160668632 1.165286897 1.146396298 1.168587889 1.119485504 1.11987256 1.101743619 1.125131926 1.167640664 1.176813092 197359206 rubisco uncultured bacterium Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria; 1.10360109 1.084338297 1.126092593 1.105350422 1.04186319 1.089081441 1.064723432 1.095224302 1.111732657 1.085338769 1.054995604 1.111310133 1.066310112 1.10145212 1.130295341 1.095353628 1.097331855 1.084535261 134077889 alpha_galactosidase_fungi truncated ORF Carbon Cycling Carbon degradation Other superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 0.899441521 0.900859912 0.824392236 0.955591211 0.893473944 0.843584014 0.913857711 0.894826943 0.861023909 0.861136741 0.888088019 0.873125411 0.925064016 0.897718186 295825494 amyA Streptomyces sp. SPB74 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 1.361232017 1.342034373 1.321281303 1.322425236 1.323041197 1.35819661 1.306067666 1.313982563 1.328451523 1.303727902 1.321564525 1.319510045 1.303607257 1.300607811 1.314182703 1.31524893 1.339800643 1.311009567 194340114 mdlc Streptomyces sp. Mg1 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 1.051888254 1.045426123 1.082314617 1.041792079 1.033074728 1.0570587 1.084700396 1.084234653 1.042028917 1.062449139 1.004206515 0.990834691 1.004337169 0.981669149 0.965846128 0.981991999 1.040819909 1.082116237 348014503 ppx Neisseria shayeganii 871 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria shayeganii; 0.859571603 0.825829146 0.887649775 0.854248759 0.826896161 0.853524088 0.830945331 0.802664966 0.84645556 0.842119051 0.823319118 747874 ligninase Phanerochaete chrysosporium Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Corticiales;family:Corticiaceae;genus:Phanerochaete; 0.825131271 0.810863472 0.873495359 0.844066527 0.814403139 0.85742023 0.863576772 0.777481722 0.872023825 0.861725769 39647613 phn Rhodopseudomonas palustris CGA009 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 1.045502769 1.05747607 1.010600538 1.005491115 0.992824156 1.023692726 0.991096198 1.002139473 1.017747349 1.034499561 1.099170975 0.996357252 0.981158468 0.978720099 0.963801699 0.962303827 1.014040976 1.082055896 302885653 rgh Nectria haematococca mpVI 77-13-4 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Fusarium;species:Nectria haematococca; 0.925418203 0.855139123 0.910256046 0.911437171 0.903829092 0.857456945 0.876625 1.056099748 0.907564768 0.88555689 0.90751936 0.899810485 0.831169719 0.808566264 0.830634823 0.823037423 0.918615933 0.922292887 307727438 FBPase Burkholderia sp. CCGE1003 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 1.130309315 1.132718276 1.068098894 1.115282008 1.073392338 1.128256325 1.100509001 1.115273085 1.106767728 1.174982413 1.115347469 1.099182728 1.076276687 1.128709735 1.032595897 1.058433178 1.107832801 1.133179893 119669923 mmox Azoarcus sp. BH72 Carbon Cycling Methane Methane oxidation superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 0.809942595 0.887651379 0.829696798 0.850475616 0.83543961 0.810266495 0.826237203 0.854925762 242216151 tannase_Cdeg Postia placenta Mad-698-R Carbon Cycling Carbon degradation Tannins superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Postia;species:Postia placenta; 1.056349147 1.015435108 1.028599187 1.068964393 1.015198925 1.01570862 1.01335998 1.008986109 1.051372198 1.021067658 1.013838961 1.026865151 1.023626437 0.9586595 0.9727839 0.971762586 1.044191842 1.017177546 228756395 nbac Bacillus mycoides Rock1-4 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus mycoides; 0.801354948 0.799185077 0.804921387 0.794973984 0.811556649 0.844847043 148240402 PRI Synechococcus sp. WH 7803 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 0.997588688 0.939399083 0.999443489 1.024572716 1.00340877 0.983437103 0.99798242 1.018693908 1.000771399 0.955367948 0.975752718 1.022538225 0.977888039 0.93397381 0.873025474 0.96918415 1.000497868 0.978164156 307743485 xyla Arthrobacter arilaitensis Re117 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter arilaitensis; 0.88430888 0.897871753 0.885819466 0.925243682 0.844556037 0.858407518 0.886702235 0.865371512 0.918455597 0.906494213 0.830558473 0.862414049 0.824648386 0.858871818 0.861432792 0.850110553 0.929420908 0.923744453 290756863 phenol_oxidase uncultured fungus Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi; 0.864382234 0.937226016 0.880607353 0.908890233 0.892376682 0.931777589 0.892739536 0.892827633 0.882740858 0.815968191 0.862343798 0.90624987 0.905767469 218564196 phenol_oxidase uncultured fungus Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi; 0.943459325 0.961421782 0.953395124 0.950509278 0.927038586 0.925181446 0.942382204 0.925512069 0.928846397 0.950113577 0.954666073 0.965219466 0.892305903 0.899459652 0.868334526 0.884869777 0.960142482 0.977795515 332336143 acetylglucosaminidase Haliscomenobacter hydrossis DSM 1100 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Saprospiraceae;genus:Haliscomenobacter;species:Haliscomenobacter hydrossis; 1.061317138 0.941136756 0.976993399 1.00740349 0.983581605 0.97285892 0.945095571 1.006204464 0.989849385 0.931291664 0.954308438 0.933234038 0.949333799 0.939651652 0.889835202 0.913128306 0.994687595 0.969254739 241366431 phn Acidovorax delafieldii 2AN Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax delafieldii; 0.851208207 0.887541535 0.890751952 0.814980808 0.835845574 0.842516436 0.85573404 0.895549626 0.833218766 0.84864921 0.838127874 0.845955227 0.882463588 400188044 bphF1 Selenomonas sp. FOBRC6 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Selenomonas; 1.066811791 1.081000117 1.099930227 1.114292107 1.033290018 1.084917507 1.062063862 1.044837484 1.059080537 1.077884984 1.029523438 1.063751209 1.014687904 1.032184744 0.988372774 1.023660015 1.088855632 1.093718023 56479167 ppk Azoarcus sp. EbN1 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 0.883874372 0.944204586 0.894452415 0.932061704 0.863183107 0.897141124 0.874947133 0.876245635 0.939665103 0.919042204 0.866483537 0.905615621 0.808794874 0.88364848 0.893430173 0.904059033 0.951952998 0.943062631 126720458 linb Roseobacter sp. SK209-2-6 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 0.84195757 0.789451451 0.801543889 0.806458277 0.816418356 0.841613115 0.786749016 0.806874087 0.822689869 0.762957382 371958186 tfth Singulisphaera acidiphila DSM 18658 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Singulisphaera;species:Singulisphaera acidiphila; 1.214774939 1.219446294 1.188891935 1.171498143 1.178510396 1.208053878 1.145548813 1.17637191 1.171172114 1.178161585 1.175646381 1.173366255 1.139940411 1.147606153 1.070242389 1.149719642 1.189811886 1.221675335 1150568 phenol_oxidase Thanatephorus cucumeris Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Cantharellales;family:Ceratobasidiaceae;genus:Thanatephorus; 1.026720009 0.984293055 0.963513595 1.052680022 0.932772416 1.004526509 0.95281905 1.030009205 1.103418461 0.984370417 0.986003068 0.966164413 0.930666152 0.94358418 0.939380874 0.957152668 1.068591956 0.989064354 291197034 exoglucanase uncultured fungus Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi; 0.864339477 0.831551369 0.83281473 0.856728075 0.837064004 0.869511313 0.84852224 0.819435536 0.844590287 0.871534416 0.828912055 0.833366412 0.832393283 0.826105353 0.819404036 0.864735907 0.864231649 387221228 amyA Leptospirillum sp. Group II 'C75' Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Nitrospirae;class:Nitrospira;order:Nitrospirales;family:Nitrospiraceae;genus:Leptospirillum; 0.986909687 0.990478353 1.006835704 1.047954179 1.040711842 1.021112948 1.04086797 1.044147114 1.030374412 1.020117181 1.001901616 1.036013987 0.981654248 0.957341841 0.979360357 0.968589336 1.032412433 1.004900155 306528634 pectinase (pectate_lyase) Dickeya dadantii 3937 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya dadantii; 0.848428957 0.951433859 0.846832615 0.823636799 0.861098696 0.916823004 0.831443627 0.840614952 0.883957958 0.863300673 0.797587247 0.856702961 0.869732775 0.877169036 0.881558829 0.875224612 88948715 soxY Halorhodospira halophila SL1 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Halorhodospira;species:Halorhodospira halophila; 1.028486163 1.020365343 0.954034197 1.052068185 0.995421266 1.021081555 0.959583803 1.015378559 1.013822982 1.013510421 0.98021744 0.994068844 0.940898706 0.992178956 0.958748813 0.990820638 1.023122309 1.002428402 304320966 phytase Parvularcula bermudensis HTCC2503 Phosphorus Phytic acid hydrolysis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Parvularculales;family:Parvularculaceae;genus:Parvularcula;species:Parvularcula bermudensis; 0.848945798 0.850399531 0.813612306 0.86035967 0.814087452 0.874684674 0.851442283 0.832789039 0.802622882 0.805371942 0.820095184 0.848532176 0.875333453 323472809 rubisco uncultured bacterium Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria; 0.904505594 0.802195656 0.85214805 0.958293708 0.990900303 0.900166331 0.967159068 0.906938674 0.890818181 0.89699154 0.830387566 0.855562439 0.909579071 0.801872402 0.835751118 0.874520911 0.877812265 0.84727493 353187829 bphd Mycobacterium rhodesiae JS60 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 1.074875148 1.113345697 1.066504001 1.109689984 1.079855315 1.133811841 1.062004435 1.060558576 1.060671884 1.076701271 1.065468148 1.079755388 1.080194887 1.082491233 1.068289991 1.086303535 1.100707665 1.081582857 183985220 cutinase Mycobacterium marinum M Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium marinum; 1.054392964 1.041650751 0.999540673 1.052711554 0.99572457 0.977424435 1.010592335 0.993064562 1.019605308 0.997503924 1.010148225 0.975147991 0.942055105 0.970835916 0.910788852 0.95479615 1.044835203 1.045624898 1781160 chrr Mycobacterium tuberculosis H37Rv Metal Homeostasis Chromium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tuberculosis; 0.853163792 0.788734611 0.80700351 0.918536155 0.864171108 0.838791814 0.889231261 0.884644794 0.894711066 0.826982297 0.826848657 0.886155283 0.854942174 146188507 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.819619598 0.805078063 0.853441281 0.803741883 0.814037581 0.827425724 58613942 mdlb Pseudomonas fluorescens Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.906894055 0.791199729 0.873924949 0.901317353 0.873284766 0.901066891 0.907599594 0.879043689 0.896677991 0.849331255 0.834155669 1.065781681 0.821431662 0.840291171 0.864822967 0.869554289 0.877881459 121714469 rgl Aspergillus clavatus NRRL 1 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 0.821230399 0.864772062 0.816562888 0.833828264 0.831591288 0.849961986 0.826371339 0.80755152 0.846045502 0.829386167 0.826711606 0.873598565 0.866746797 0.824770697 19716121 dsra uncultured bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.792819146 0.811204666 56679174 b_lactamase Ruegeria pomeroyi DSS-3 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 1.092323416 1.039346213 1.062641428 1.061664535 1.055328155 1.065990165 1.042203755 1.054411079 1.052065447 1.024477364 1.047830584 1.043128999 1.032027012 1.044682734 1.00253793 1.012259023 1.020098267 1.119925568 93354878 PRI Cupriavidus metallidurans CH34 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 1.20392025 1.186751178 1.126087509 1.170528932 1.137052195 1.174907633 1.122510862 1.162037829 1.152978657 1.152038822 1.118344899 1.15344826 1.102161469 1.115149304 1.082927782 1.130156896 1.181438211 1.155129948 351684017 cellobiase Rhodanobacter sp. 2APBS1 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Rhodanobacter; 1.172782438 1.36208131 1.101911896 1.085673891 1.044960102 1.055225318 0.998737624 0.999046772 1.036155744 1.062750769 0.981765681 1.081874797 0.977042093 1.036822127 0.972940862 1.016829575 1.063611858 1.09735547 374989964 linb Streptomyces bingchenggensis BCW-1 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces bingchenggensis; 0.92734233 0.922159229 0.851751782 0.95361444 0.917297625 0.892031913 0.90233625 0.908381554 0.918756401 0.918496859 0.953396108 0.936244576 0.914369277 0.90236621 0.855233356 0.907465505 0.907034975 0.911604738 396926195 catechol_b Rhodococcus sp. JVH1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 1.187289824 1.176142862 1.162480174 1.170817804 1.141525106 1.151515965 1.121767919 1.17419501 1.161919348 1.161865609 1.14243449 1.170165261 1.135303937 1.144352271 1.117541377 1.148955705 1.174653062 1.161955955 353194852 xylj Halobacterium sp. DL1 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halobacterium; 1.093759953 1.07926205 1.085869069 1.105618038 1.120598784 1.086263668 1.029228399 1.08789758 1.07124139 1.084156134 1.048428656 1.090189845 1.072831059 1.043628235 1.044621187 1.035007596 1.097749373 1.064571049 351592988 terc Pelagibacterium halotolerans B2 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Pelagibacterium;species:Pelagibacterium halotolerans; 0.928464286 0.87563624 0.926763329 0.914243585 0.890737668 0.854221364 0.879799882 0.961870063 0.92612719 0.874927311 0.867261916 0.843268816 0.886400667 0.862549731 0.878918473 0.90809554 0.924869572 315588888 terc Intrasporangium calvum DSM 43043 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Intrasporangium;species:Intrasporangium calvum; 0.812085848 0.866368386 0.853591419 0.855703904 0.84087474 0.81833651 0.818207946 39971943 phospholipase_B_fungi Magnaporthe oryzae 70-15 virulence degradation NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 0.906732414 0.878626047 0.848012953 0.896675224 0.837528801 0.88951161 0.831509866 0.828693325 0.904692476 0.83034232 0.885727257 0.861390472 0.862134207 0.856928725 0.859031348 0.914236922 0.900549364 167355472 cysI Shewanella halifaxensis HAW-EB4 Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella halifaxensis; 1.040734868 1.060799956 1.016054851 1.015017856 1.013511678 1.040129547 1.010610744 1.016822559 1.038245811 1.027615682 1.008256489 1.038646926 0.967242903 0.962756507 0.951043225 1.002609443 1.024393043 1.045632354 291345563 bphc Streptomyces ghanaensis ATCC 14672 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces ghanaensis; 1.175966851 1.196040276 1.144028589 1.162737758 1.159668076 1.169238051 1.138767666 1.141882877 1.13806263 1.168954298 1.113841944 1.146403328 1.115667161 1.135207587 1.051296714 1.140277681 1.152005369 1.160306729 91788843 ben_bcla Polaromonas sp. JS666 virulence NA NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 0.830327037 0.952414766 0.920125923 0.846034187 0.821797782 0.889442291 0.845503133 0.937372723 0.798511919 0.907630329 0.866062287 0.83616789 0.798997906 0.907859804 210630944 arsc Collinsella stercoris DSM 13279 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Collinsella;species:Collinsella stercoris; 0.856187525 0.851100104 0.822084235 0.889081747 0.855844264 0.841979291 0.839875069 0.841349197 0.837266022 0.838692713 0.900935431 0.848724654 0.833535232 0.919308622 0.880280785 0.888285809 211583855 cutinase Penicillium chrysogenum Wisconsin 54-1255 Carbon Cycling Carbon degradation Cutin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 1.01559228 1.063934773 1.037727847 1.048318975 1.047384748 1.064536429 0.999228984 1.017985221 1.048647286 1.03741007 1.003155639 1.028460921 1.021056163 1.020203756 1.032874444 1.03918875 1.065643956 1.060604869 223470331 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.94989515 0.88906877 0.961080378 0.950203094 0.923689494 0.949040262 0.890055483 0.929975144 0.940762843 0.960364995 0.957912431 0.911627649 0.966212445 0.942591064 0.890050944 0.957372731 0.982154578 0.917693719 86606354 FBPase Synechococcus sp. JA-3-3Ab Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 0.919512941 0.792876075 0.869527357 0.914265217 0.853748546 0.886729035 0.912904193 0.917787623 0.914385542 0.868310694 0.901060462 0.910684722 0.86383246 0.851455294 0.853330163 0.892221912 0.932180233 0.868722409 261371595 mannanase Fibrobacter succinogenes subsp. succinogenes S85 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Fibrobacteres;class:Fibrobacteres;order:Fibrobacterales;family:Fibrobacteraceae;genus:Fibrobacter;species:Fibrobacter succinogenes; 0.829364935 0.81173216 291299452 endoglucanase Stackebrandtia nassauensis DSM 44728 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Glycomycetaceae;genus:Stackebrandtia;species:Stackebrandtia nassauensis; 1.220101413 1.182771273 1.186142771 1.203128753 1.169503927 1.219489537 1.137949494 1.159387395 1.169208908 1.179962361 1.145634719 1.175522862 1.149408695 1.177584303 1.184498759 1.152928104 1.232109363 1.173223599 82410283 TIM Nitrosospira multiformis ATCC 25196 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosospira;species:Nitrosospira multiformis; 1.197448693 1.190817842 1.176711559 1.189739477 1.150998503 1.169519803 1.157055054 1.184310777 1.198447077 1.176423048 1.150200087 1.195724782 1.12144248 1.10690034 1.1321232 1.169308793 1.182284264 1.185509846 167668107 CsoS1_CcmK Anaerotruncus colihominis DSM 17241 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Anaerotruncus;species:Anaerotruncus colihominis; 0.794770836 0.8455971 0.819468325 0.799901627 0.841730032 0.844388743 0.762219181 0.858713745 0.806537478 0.799041071 0.819389849 76253301 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.783256292 0.823976245 0.879529534 0.831693785 0.826292088 0.817831986 0.786674058 0.878422415 0.844291742 0.855233583 0.760507604 0.794301651 330954173 arsc Pseudomonas syringae Cit 7 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae; 0.804834505 0.84321886 0.86246694 0.800712838 0.86860464 0.803207103 0.876891402 78513569 badh Bradyrhizobium sp. BTAi1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 1.112985044 1.072732884 1.071021553 1.055339607 1.073882131 1.092933659 1.047301693 1.070409504 1.063345144 1.059016243 1.061452875 1.138087099 1.014739627 1.069156205 1.040437724 1.035110748 1.034825665 1.06830812 395010828 catb Acidovorax sp. CF316 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 0.765394144 0.80718808 0.810567485 0.793332323 0.82642791 0.828458879 308055993 oxdb Pantoea vagans C9-1 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea;species:Pantoea vagans; 0.774683308 0.873066764 0.805960558 0.807601402 0.794912569 365898087 amyA Bradyrhizobium sp. STM 3843 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.952445813 0.991375499 0.971811708 0.983278659 0.981282159 1.044059709 0.980392087 0.918509768 0.950561754 1.030084664 0.978706207 0.929715101 0.971353007 1.052685222 0.971667706 0.938982629 0.990228635 1.021477394 384251372 Sir Coccomyxa subellipsoidea C-169 Sulfur sulfite reduction NA superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Trebouxiophyceae;family:Coccomyxaceae;genus:Coccomyxa;species:Coccomyxa subellipsoidea; 1.233847903 1.172915078 1.201329033 1.217422148 1.224614475 1.216262725 1.22148849 1.184628206 1.220511544 1.196647485 1.199839255 1.202038202 1.157084198 1.143345182 1.101591611 1.16345905 1.196418377 1.179396816 111073775 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 0.829277509 0.851575364 0.787871063 0.904809138 0.909652848 0.845529746 0.822008016 0.859792958 0.857507259 352962452 rubisco uncultured bacterium Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria; 0.810310143 0.811821036 0.803497052 0.817064463 0.796898186 0.821366305 0.820689871 0.820145512 0.794773647 0.819824185 0.838812306 86158824 nosz Anaeromyxobacter dehalogenans 2CP-C Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter;species:Anaeromyxobacter dehalogenans; 1.199095511 1.15815241 1.185763194 1.200275908 1.197697618 1.180671705 1.184266101 1.187180354 1.201587073 1.135345426 1.15538198 1.185939139 1.168185057 1.116977685 1.190114056 1.172990971 1.195249678 1.142647217 312884727 acetylglucosaminidase Vibrio caribbenthicus ATCC BAA-2122 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio caribbenthicus; 0.889707153 0.892703247 0.869250292 0.900695716 0.909499208 0.889999439 0.87271184 0.853202056 0.871573871 0.82921865 0.874132973 0.874651611 0.821183462 0.848404335 0.845252934 0.877590927 0.886039412 51855367 nitro Symbiobacterium thermophilum IAM 14863 Organic Remediation Others NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XVIII. Incertae Sedis;genus:Symbiobacterium;species:Symbiobacterium thermophilum; 0.959649309 1.052631402 0.97638958 1.027197184 1.002171698 0.923740103 0.964117543 1.014607316 1.074458608 0.964652193 0.890252156 0.939671251 1.017748521 1.02899765 0.924100776 0.888565326 0.962761586 1.032666771 346991454 urec Ruegeria sp. TW15 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 1.050227271 1.197367308 1.004055105 1.203055862 1.10481566 1.069750315 1.133236037 0.970869893 1.089175078 1.051038581 1.0774834 1.136442089 1.081617075 0.964328306 0.955573584 1.033868723 1.055169557 0.978837281 120404199 arsc Mycobacterium vanbaalenii PYR-1 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 0.981763774 0.980985103 0.994235251 0.992000952 0.902195747 1.035522148 0.893506131 1.000534564 0.997814468 0.966782248 0.899145354 0.949711209 0.889093615 0.913807775 0.81730658 0.939254513 0.95354303 1.020259147 29466078 norb uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.12218491 1.150873304 1.063291188 1.126367644 1.108258388 1.109435446 1.072026933 1.063749938 1.091867159 1.14057737 1.134421887 1.176607842 1.129278657 1.114237236 1.050429492 1.083147206 1.097439401 1.115614372 116201269 pec_Cdeg Chaetomium globosum CBS 148.51 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 0.885593107 0.857721108 0.815929104 0.910858045 0.863805904 0.840384116 0.891864772 0.895664401 0.812126855 0.817304141 0.875357783 0.82607681 0.92908633 78213610 amyA Synechococcus sp. CC9605 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 1.054766307 1.04181316 1.030165765 1.046662306 1.011527058 0.998850592 1.026573449 1.03505243 1.040413133 0.995956098 0.997683875 1.026323948 0.983315897 0.948975893 0.977243528 0.963959625 1.044054311 1.058654238 335356798 cda Lactobacillus animalis KCTC 3501 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus animalis; 0.800607735 0.80438756 0.805113313 162282386 nifh Hoeflea phototrophica DFL-43 Nitrogen Nitrogen fixation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Hoeflea;species:Hoeflea phototrophica; 0.918273316 1.023100447 0.976637886 0.956384258 1.01298535 0.997934636 0.985374925 0.96711019 0.954084411 1.036393614 0.988445623 0.96821087 0.911528232 0.910707389 0.87686468 0.929599814 1.001256822 1.000904705 326954778 tfth Pseudonocardia dioxanivorans CB1190 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Pseudonocardia;species:Pseudonocardia dioxanivorans; 1.071907996 1.03637839 1.045586387 1.05736983 1.057293732 1.079598088 1.018763624 0.986410114 1.053876904 1.006739975 1.001002134 1.032120961 0.997768178 0.991791054 1.002221372 1.027829327 1.05167605 1.044079248 27376124 soxY Bradyrhizobium japonicum USDA 110 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 0.890576645 0.953444122 0.978075822 0.906483306 0.945274009 0.963090087 0.870995044 0.901685172 0.926419443 0.936427753 1.023871163 0.947242832 0.946204655 0.928068581 0.927475767 0.935195788 0.933711011 0.960001782 422314029 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.881277012 0.838676515 0.856791393 0.851363386 0.81022997 0.856038334 0.811551177 0.907431034 0.909102453 0.889733399 0.873649327 0.832878406 0.836245263 0.844840627 0.853097578 0.854551179 0.885225602 110632550 arsc Mesorhizobium sp. BNC1 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 1.24304806 1.234484989 1.208660595 1.214944819 1.232171361 1.268119179 1.240392236 1.231665923 1.190802511 1.25997043 1.241516751 1.214554287 1.208961432 1.167708212 1.151481879 1.173735946 1.201190317 1.184330415 330688049 aoxb uncultured bacterium Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 0.828998538 0.8156356 0.809821209 0.821117442 0.827773438 146401765 nhh Acidiphilium cryptum JF-5 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acidiphilium;species:Acidiphilium cryptum; 1.195054144 1.149851765 1.159511054 1.181177793 1.123533952 1.169349622 1.143268831 1.176377194 1.158393228 1.15747833 1.140601632 1.195613848 1.113499769 1.135352172 1.138506554 1.146915379 1.171995577 1.166026377 16041067 phenol_oxidase Pycnoporus coccineus Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Polyporaceae;genus:Pycnoporus; 0.767538835 0.807119689 378802540 linb Mycobacterium intracellulare MOTT-02 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium intracellulare; 1.116477971 1.051840017 1.061671201 1.1446498 1.041515896 1.085191541 1.055468481 1.067709574 1.083632881 1.070242933 1.075273663 1.073407221 1.034238496 1.035220044 1.017996512 1.069053456 1.124408936 1.077336531 195364309 mult_ring_12DiOx Propionibacteriaceae bacterium MOB600 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae; 0.856523122 0.86043472 0.821539505 0.827256853 0.87474941 0.877627497 0.82389717 0.919875023 0.873334838 0.836210783 0.873135728 0.835807327 0.899427173 0.867757494 0.873047643 219860987 RgaE Arthrobacter chlorophenolicus A6 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 1.308785358 1.243361298 1.26291959 1.262393473 1.202820975 1.300233388 1.235088711 1.217117575 1.225849276 1.20716586 1.217086933 1.252359651 1.21779488 1.206244 1.173907854 1.204865211 1.321592671 1.213848814 325545238 tfda Xanthomonas gardneri ATCC 19865 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas gardneri; 0.849804132 0.884705136 0.904321286 0.905740788 0.892575217 0.927244861 0.883117415 0.814476571 0.843665248 0.85736225 0.807232083 0.869885325 0.842635864 0.803575241 0.89138565 0.887671161 109632247 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.041093698 1.060839291 1.014301088 0.994121807 1.00376097 1.110533846 1.040604389 0.994772321 1.026676195 1.03800089 1.028764072 1.010848422 0.979214625 1.036516713 0.925197564 0.976958809 1.001939495 1.050973561 302326096 nifh Fibrobacter succinogenes subsp. succinogenes S85 Nitrogen Nitrogen fixation NA superkingdom:Bacteria;phylum:Fibrobacteres;class:Fibrobacteria;order:Fibrobacterales;family:Fibrobacteraceae;genus:Fibrobacter;species:Fibrobacter succinogenes; 0.841923925 0.90178401 0.900598074 0.886193684 0.948934231 0.879193482 0.879733885 0.8283757 0.758479192 0.886703037 0.872496358 0.831974519 0.868906018 0.829266061 0.845358497 0.835276699 0.905252433 70986018 exoglucanase Aspergillus fumigatus Af293 Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Aspergillus fumigatus; 0.928650579 0.941910416 0.860458375 0.897202658 0.908391451 0.955374637 0.917742441 0.896396637 0.875696621 0.937810315 0.886984816 0.913185908 0.878539018 0.886813001 0.890551861 0.918387378 0.882421625 0.899151652 403189442 mhpb Acinetobacter radioresistens DSM 6976 = NBRC 102413 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter radioresistens; 0.812171907 0.799117087 218760754 nifh Desulfatibacillum alkenivorans AK-01 Nitrogen Nitrogen fixation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfatibacillum;species:Desulfatibacillum alkenivorans; 0.866182209 0.857210233 0.820125797 0.832439161 0.788480451 0.817660529 0.795720883 0.816541616 0.830705888 0.804262649 111020705 cutinase Rhodococcus jostii RHA1 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 0.954428093 0.9252052 0.924862772 0.928354399 0.939371351 0.919429089 0.947926436 0.918548627 0.921616138 0.910714694 0.861688617 0.869283272 0.888915988 0.853068179 0.805995392 0.940340799 0.954186628 3157532 nifh unidentified nitrogen-fixing bacteria Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.881687705 0.879103352 0.86972684 0.909071664 0.906132491 0.923156022 0.873567912 0.903225841 0.888805295 0.930362185 0.868445004 0.906813252 0.859878278 0.90306838 0.862747888 0.847268659 0.90059029 0.878533935 395808967 arylest Pseudomonas stutzeri DSM 10701 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 1.130493168 1.094162715 1.114866872 1.103704562 1.042095242 1.08980992 1.054526213 1.096408721 1.104197958 1.086739206 1.111564567 1.071495518 1.068688269 1.067839805 1.047438399 1.072529413 1.087742113 1.102026738 374368416 xlnd Cupriavidus basilensis OR16 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus basilensis; 0.921629521 0.861823811 0.875360915 0.885740004 0.97528382 0.884850624 0.917937642 0.883422573 0.816033686 0.812445558 0.86535503 0.850452246 0.847249925 0.88220769 29466068 norb uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.360245613 1.323867368 1.346428111 1.353014365 1.30846392 1.351601941 1.332266163 1.337444671 1.327020132 1.304155234 1.332848661 1.324798407 1.310159171 1.287402011 1.27503475 1.312339208 1.355560207 1.304801038 156049363 Sir Sclerotinia sclerotiorum 1980 Sulfur sulfite reduction NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Sclerotinia;species:Sclerotinia sclerotiorum; 0.81275368 0.837764053 1.066695879 0.91308607 0.820761922 0.821327754 0.815395593 0.842742617 0.872832268 0.822445677 0.88626421 0.938977995 0.866315022 325538912 ara Xanthomonas vesicatoria ATCC 35937 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas vesicatoria; 1.462225255 1.430869241 1.427803309 1.451205961 1.431968174 1.45590971 1.412130405 1.433381884 1.425735121 1.412015394 1.418756375 1.443017506 1.409695002 1.381243714 1.325467752 1.395810059 1.451622508 1.400244163 312439574 fthfs Methylovorus sp. MP688 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Methylophilales;family:Methylophilaceae;genus:Methylovorus; 0.912865618 0.933503294 0.890434582 0.911750826 0.884637839 0.907358711 0.830796532 0.881260265 0.917240043 0.907900368 0.819233811 0.86785191 0.868972404 0.884199181 0.815717308 0.858164206 0.921678896 0.940757398 190715232 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.011500504 0.964510127 0.938541902 0.958824524 0.956932387 0.962865799 0.985098744 0.965507667 0.986385427 0.969059162 0.955830605 0.955240732 0.972815731 0.953981342 0.963467086 0.973848861 0.972658114 0.983996567 422314537 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.796775088 0.814550432 0.823212826 0.835370636 0.81274627 0.810839461 0.8003753 0.849573659 0.832156823 0.803569547 0.833150847 0.84684989 344943304 arsm Methylobacter tundripaludum SV96 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylobacter;species:Methylobacter tundripaludum; 0.984294059 0.970906924 0.958684101 0.98298838 0.910327854 0.931314707 0.902091053 0.961101204 0.961540875 0.960337948 0.919079808 0.96062363 0.917407614 0.902838507 0.923686023 0.912343 1.000600753 0.965349549 302868850 rgl Micromonospora aurantiaca ATCC 27029 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Micromonospora;species:Micromonospora aurantiaca; 1.192129131 1.129947558 1.167472779 1.159744026 1.105161923 1.123054928 1.097260621 1.151437763 1.151156574 1.094702579 1.13527746 1.15836494 1.103256791 1.111425513 1.110134959 1.118623739 1.176680007 1.109554299 302492525 urec Desulfovibrio fructosovorans JJ Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio fructosovorans; 0.989098341 0.996161642 0.965639359 1.020801 0.922241552 0.998736946 0.972244452 1.013004678 0.995060684 0.999659805 0.941000358 0.973167092 0.904146005 0.961626027 0.864035773 0.965929399 0.99835148 1.0099787 161162937 pme Sorangium cellulosum 'So ce 56' Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 1.66376733 1.606245997 1.617572023 1.603766144 1.59077885 1.646028445 1.588816992 1.58973928 1.599113286 1.583145616 1.608055013 1.604541441 1.570645892 1.558812752 1.573524323 1.613982446 1.602841849 1.579339062 210630992 acetylglucosaminidase Collinsella stercoris DSM 13279 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Collinsella;species:Collinsella stercoris; 0.81411258 0.785918257 0.826077432 0.853421623 0.849442786 88701513 tktA Congregibacter litoralis KT71 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Congregibacter;species:Congregibacter litoralis; 0.889932141 0.886010825 0.857251172 0.888028154 0.917575483 0.913144708 0.911727965 0.805315604 0.912575699 0.91368561 0.8984337 0.91741083 0.890050373 0.912405046 0.874944559 0.899683336 0.899630019 114799430 SoxA Hyphomonas neptunium ATCC 15444 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Hyphomonas;species:Hyphomonas neptunium; 1.116869245 1.13492973 1.11349867 1.11273817 1.112136129 1.129437892 1.067837717 1.076163053 1.078654353 1.091359181 1.106314359 1.108834922 1.074725931 1.076921097 1.050886188 1.073099509 1.109831825 1.095319409 120595692 vdh Polaromonas naphthalenivorans CJ2 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 0.917802998 0.924100687 0.906363261 0.962782787 0.952386267 0.917270676 0.891103426 0.878702371 0.881397207 0.855764707 0.851247269 0.953855314 0.876172646 0.876929401 0.933670955 0.882222305 0.925520878 0.956022214 251846598 xylanase Paenibacillus sp. oral taxon 786 str. D14 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus sp. oral taxon 786; 0.839531354 0.837093078 0.870675871 0.869458168 338530591 urec Myxococcus fulvus HW-1 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus fulvus; 1.302334171 1.295080305 1.262588617 1.270798707 1.268421927 1.288029912 1.264898448 1.282923402 1.282421708 1.265710045 1.298362902 1.31626797 1.253602324 1.236926538 1.254997798 1.284680996 1.283115474 1.254693135 169620535 phospholipase_A2_fungi Phaeosphaeria nodorum SN15 Carbon Cycling Carbon degradation Phospholipids superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Phaeosphaeriaceae;genus:Phaeosphaeria;species:Phaeosphaeria nodorum; 0.916235932 0.805051795 0.840235316 0.894959819 0.917939301 0.893952504 0.83259571 0.888582637 0.876617028 0.871836089 0.896376397 0.886845084 327394998 cysI Pantoea ananatis AJ13355 Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea;species:Pantoea ananatis; 0.822356811 0.809867641 0.832274602 0.853613388 0.792951449 0.858438086 0.821855416 384371742 urec uncultured bacterium Nitrogen Ammonification NA superkingdom:Bacteria; 0.999036685 0.982841352 1.010081586 0.955976653 0.913842624 0.959881791 0.902512443 0.920706126 0.964700256 0.978358562 0.933611506 0.94641654 0.912261418 0.945420617 0.910708611 0.924327163 0.994560887 1.004919527 63256070 pcag Pseudomonas syringae pv. syringae B728a Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae; 0.795616126 0.819708431 0.82674882 0.773554569 329956818 acetylglucosaminidase Bacteroides clarus YIT 12056 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides clarus; 1.079364491 1.07441918 1.042488712 1.067951004 1.048800677 1.050219381 1.047532897 1.042688231 1.059198043 1.064277249 1.04997996 1.066589759 1.042082174 1.03744853 1.015373481 1.032142982 1.070691119 1.042573861 365837806 atzb Hafnia alvei ATCC 51873 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Hafnia;species:Hafnia alvei; 0.82277957 0.829541016 0.807802848 0.81291349 0.819462089 0.794785249 114538697 atzb Fulvimarina pelagi HTCC2506 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Fulvimarina;species:Fulvimarina pelagi; 1.134013692 1.144076892 1.074069978 1.178914217 1.073076497 1.112966986 1.074476357 1.09474604 1.111804611 1.072735478 1.058947536 1.084172083 1.07417309 1.056279388 1.043954192 1.065189109 1.134626887 1.127706043 335339490 amyA Halopiger xanaduensis SH-6 Carbon Cycling Carbon degradation Starch superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halopiger;species:Halopiger xanaduensis; 0.910668734 0.896559447 0.890384892 0.943230835 0.872680671 0.871263212 0.821143539 0.894501839 0.929810885 0.885349479 0.876568192 0.968273691 0.858109006 0.852812944 0.828706904 0.884964636 0.917806477 0.927748034 214042875 ben_bcla Roseobacter sp. GAI101 virulence NA NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 0.869426866 0.878125025 0.885109995 0.789840461 0.791102326 0.816838317 0.962926607 0.844271393 0.770803631 0.851192288 211905653 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.863840523 0.914566953 0.87217812 0.815479265 0.811216295 0.88280444 0.883351567 0.872946993 0.854581733 0.842490905 0.901183503 0.899042355 0.852731455 345298179 arylest Enterobacter asburiae LF7a Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter asburiae; 0.998438574 0.963100902 0.995680322 1.050613874 1.007973732 1.012956217 1.022308254 1.037587432 1.028333192 0.985705848 1.005300842 1.018524313 1.020896829 0.973526247 0.995076586 0.984603135 1.045564804 0.988313006 226944670 GAPDH_Calvin Azotobacter vinelandii DJ Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Azotobacter;species:Azotobacter vinelandii; 1.272812585 1.221743206 1.177477932 1.241523907 1.199365352 1.204598062 1.177267981 1.166475793 1.252543127 1.211968029 1.185590289 1.233074108 1.155794163 1.176707172 1.12004991 1.187390436 1.169833491 1.233529752 319943835 soxY Lautropia mirabilis ATCC 51599 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Lautropia;species:Lautropia mirabilis; 1.064826185 1.072641571 1.054970361 1.039172511 1.092129904 1.073923057 1.030887926 1.000171719 1.049847168 1.014114719 1.071249005 1.054624913 1.037639214 0.991668345 0.994678818 1.003473291 1.047708324 1.088510679 258544002 ppx Cardiobacterium hominis ATCC 15826 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Cardiobacteriales;family:Cardiobacteriaceae;genus:Cardiobacterium;species:Cardiobacterium hominis; 1.095169791 0.937676641 0.957664579 0.986474635 0.954916682 0.936672303 0.906847043 0.936564291 0.95952783 0.942740377 0.987018564 0.938918482 0.881387572 0.862478868 0.840417096 0.945957397 0.935877711 0.974472565 48527114 mcra uncultured Methanomicrobiales archaeon Carbon Cycling Methane Methanogenesis superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales; 0.893015678 0.874799657 0.871077944 0.908937104 0.864467484 0.896136208 0.8801328 0.88744351 0.912197394 0.899017996 0.847330308 0.865809981 0.820056895 0.908274347 0.817939456 0.851746756 0.911433414 0.917243422 325520155 bphd Burkholderia sp. TJI49 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 1.023058637 0.983521993 1.070769415 1.007619249 0.979464133 1.051084704 0.986721873 1.029603102 1.036990629 1.028721973 1.020036261 0.995323958 0.939643578 0.992629527 0.937352107 0.974946655 1.068095139 1.061025372 284447505 nitrate_reductase uncultured eukaryote Nitrogen N Assimilation NA superkingdom:Eukaryota; 0.89068175 0.839858088 0.867262538 0.876067998 0.902340441 0.88279126 0.920782072 0.893751738 0.892319807 0.882600339 0.916146254 0.868294852 0.859511294 0.844111174 392516361 nitrilase Rhizobium leguminosarum bv. trifolii WU95 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 0.807781605 0.897615539 0.790572474 0.827326495 0.841462401 0.793533465 0.77422253 0.789726923 0.817830043 16506231 nasa uncultured marine bacterium Nitrogen Assimilatory N reduction NA superkingdom:Bacteria; 0.873042705 0.843190878 0.85070861 0.822609973 0.850875852 0.830913536 0.866695216 0.814753427 0.883413486 0.874524342 0.871736832 0.84941809 0.870346665 198242124 cysI Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 1.118317592 1.127242584 1.117501624 1.134246388 1.111451202 1.109940307 1.082845806 1.129775428 1.119331017 1.100841121 1.123151945 1.144995694 1.102025488 1.076764166 1.105989562 1.06018573 1.100401091 1.068046485 139003172 nifh uncultured nitrogen-fixing bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 1.023606005 1.010860002 0.983004064 1.074617654 0.984550892 1.046321058 1.016900561 1.00381987 1.03237049 1.009535299 0.998242936 1.015200991 0.979723576 1.005826647 0.978332211 1.00927757 1.057241077 1.002509658 183981987 limeh Mycobacterium marinum M Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium marinum; 1.283113468 1.329380677 1.289069072 1.255875376 1.283542281 1.338349916 1.263771107 1.246588582 1.241754366 1.29813882 1.318423785 1.326876878 1.256775058 1.278623836 1.310219809 1.270582401 1.275596614 1.302797293 291345602 terc Streptomyces ghanaensis ATCC 14672 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces ghanaensis; 1.249457997 1.22688744 1.237167444 1.170489734 1.156838028 1.239388396 1.134180144 1.197884602 1.1911724 1.199132259 1.180393464 1.173075805 1.111945939 1.19808777 1.144863222 1.172881938 1.191453753 1.230151167 302421756 pec_Cdeg Verticillium albo-atrum VaMs.102 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticillium;species:Verticillium alfalfae; 1.3487511 1.317773766 1.301644247 1.32291178 1.315110973 1.363060099 1.320471992 1.300454525 1.310288526 1.340997308 1.306551042 1.308559384 1.306015174 1.340040032 1.30529227 1.344211289 1.358895875 1.294224999 365423798 cellobiase Bradyrhizobium sp. STM 3843 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 1.093636121 1.026707525 1.074149665 1.095895486 1.077414035 1.047587709 1.053386588 1.097622326 1.087723507 1.048407469 1.036535332 1.059930536 1.021501168 0.965383643 0.97584122 0.951102977 1.084643733 1.053511419 363423712 alkk Rhodococcus pyridinivorans AK37 Organic Remediation Others NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus pyridinivorans; 1.279660799 1.270009915 1.247644087 1.238664784 1.247099948 1.267476931 1.189452672 1.193522125 1.217975857 1.224424282 1.221321681 1.218069084 1.235945482 1.191596457 1.20611557 1.208042503 1.275751176 1.251610276 218665071 phn Acidithiobacillus ferrooxidans ATCC 23270 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus ferrooxidans; 0.962977145 1.023985601 0.954978506 0.959517033 0.941911054 0.996225532 0.932070775 0.909150517 0.936606897 0.984273876 0.932306013 0.944738676 0.940379585 0.936735009 0.964755507 0.980300871 0.94785701 1.007840687 156976898 amyA Vibrio harveyi ATCC BAA-1116 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio campbellii; 1.302580502 1.252376437 1.223980982 1.261047442 1.235173873 1.20231241 1.200718539 1.230604864 1.259157984 1.218672985 1.231936071 1.263141372 1.185843758 1.166523384 1.181947144 1.197773377 1.23818833 1.215150944 357425533 amyA Azospirillum lipoferum 4B Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum lipoferum; 0.843950128 0.875537115 0.846574653 0.814938942 0.846199582 0.856639273 0.799202964 0.8175371 0.855254053 339637427 ppx Lactobacillus pentosus IG1 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus pentosus; 0.804889839 0.781134806 167519765 hsp90_Choanoflagellida Monosiga brevicollis MX1 Other Phylogenetic NA superkingdom:Eukaryota;order:Choanoflagellida;family:Codonosigidae;genus:Monosiga;species:Monosiga brevicollis; 1.252423069 1.248113171 1.219648219 1.235610257 1.220105953 1.264691579 1.218600164 1.222217483 1.237971988 1.22642864 1.205079077 1.258779345 1.217273606 1.198368679 1.296876801 1.305057929 1.22652139 1.229898911 302835720 actin_Viridiplantae Volvox carteri f. nagariensis Other Phylogenetic NA superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Chlorophyceae;order:Chlamydomonadales;family:Volvocaceae;genus:Volvox;species:Volvox carteri; 0.980561306 0.960722384 1.003294057 0.938434054 0.919897629 0.920106166 0.980092821 0.973102652 112463337 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.793284671 0.834137115 377528764 nirb Gordonia sputi NBRC 100414 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia sputi; 0.899666407 0.8825349 0.866583912 0.867303531 0.882269537 0.874510229 0.809012054 0.838151442 0.874818395 0.82042265 0.831420722 0.816042941 0.847628247 0.827970238 0.824945811 0.913727432 0.920674592 334129782 fthfs Methyloversatilis universalis FAM5 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Methyloversatilis;species:Methyloversatilis universalis; 1.084051446 1.085502478 1.035358814 1.112986119 1.078289944 1.065893304 1.036486414 1.02858117 1.04835979 1.069960268 1.064905295 1.084121962 1.094741721 1.04044383 1.009533834 1.037965118 1.10956832 1.04457921 374313627 arsc Granulicella mallensis MP5ACTX8 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Granulicella;species:Granulicella mallensis; 0.906988323 0.896988252 0.944215512 1.019615793 0.978170728 0.974240699 0.983695685 0.979501173 0.995127898 0.931879948 0.956424678 0.953350743 0.895570467 0.858170191 0.838012551 0.893984115 0.976180224 0.878862889 387129625 arsc Methylophaga sp. JAM7 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Methylophaga; 0.771484006 0.847588307 0.823653295 0.783627788 0.840144668 0.841199442 350270138 chitinase Oscillibacter valericigenes Sjm18-20 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Oscillospiraceae;genus:Oscillibacter;species:Oscillibacter valericigenes; 0.935663973 0.918972806 0.799926779 0.906133752 0.835332804 0.815891187 0.861327886 0.897124286 0.869697224 0.803586247 0.891634646 0.78217859 0.817899268 0.895346926 0.935468815 83590465 dsra Moorella thermoacetica ATCC 39073 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Moorella;species:Moorella thermoacetica; 0.858024485 0.81002232 365895486 PRI Bradyrhizobium sp. STM 3843 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.799630028 0.800226525 0.824746802 0.802040176 0.820787177 0.819837097 0.863344575 0.79716989 0.857281501 381374196 amyA Actinoplanes missouriensis 431 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes;species:Actinoplanes missouriensis; 0.90842171 0.962510742 0.868968709 0.909022809 0.884984214 0.933761512 0.887448578 0.824380817 0.90965845 0.910226126 0.872885175 0.906601762 0.87827432 0.84948708 0.872697037 0.936665496 0.942448164 109632453 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.015634477 0.985930851 1.030140791 1.016380302 1.027271447 0.977635201 1.002851672 1.203617905 1.033797421 0.959190394 0.989089148 0.995455824 1.011201974 0.944691533 0.904358176 0.98360235 0.997323323 0.99269084 3059192 bphc Rhodococcus erythropolis Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 1.044079578 1.018562775 1.012207649 1.064712369 1.069533304 1.031201689 1.044634509 1.059568852 1.062729621 1.041655644 1.026591653 1.087463063 1.02058208 1.003441039 0.966186554 0.985681272 1.050219341 1.070901049 300390410 fthfs uncultured bacterium Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria; 0.880898584 0.939726363 0.923550466 0.904919865 0.881886892 0.900068353 0.893421514 0.917676844 0.899580887 0.911890263 0.871636439 0.910054565 0.899494782 0.949920638 0.822002113 0.886876933 0.906450224 0.906077755 60476284 dsrB uncultured bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.991882072 1.040760737 1.040508936 1.045353116 1.071298969 0.992346341 1.061604512 1.01225812 1.000525649 0.997595221 1.020156844 1.058297269 1.012737363 0.977115695 0.983135232 1.006787935 1.04518948 1.006456327 398846408 xylj Pseudomonas sp. GM84 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 1.123916946 1.110671926 1.132794918 1.164746202 1.135567254 1.145942323 1.159933386 1.156215922 1.132749571 1.1163571 1.140792357 1.134351814 1.086093884 1.102146897 1.048860314 1.093619869 1.1551165 1.08967861 332377342 fthfs uncultured bacterium Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria; 1.043156268 1.045423308 1.022083026 1.029263833 0.992694797 1.054018802 0.979635925 1.012724231 1.032273077 0.997397503 0.991418349 0.99293823 1.002236728 0.998790874 0.967196659 1.00594257 1.024562556 1.056376777 255284382 cellobiase Bryantella formatexigens DSM 14469 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Marvinbryantia;species:Marvinbryantia formatexigens; 0.858059433 0.854119052 0.882620875 0.872197417 0.796602578 0.868235157 0.8354398 0.89736582 0.866071219 0.884810598 0.819512289 0.789398521 0.844643571 0.820533519 0.791559043 0.904445838 145554371 mer Rhodobacter sphaeroides ATCC 17025 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 1.037173753 1.006923066 0.966520944 0.980406383 0.986133849 1.030105174 0.9478025 0.964852608 0.980582578 0.952760987 0.936744043 0.946899149 0.972619391 0.960966041 0.925210222 0.947390291 1.03219576 0.995912915 333397304 ppx Leuconostoc gelidum KCTC 3527 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Leuconostocaceae;genus:Leuconostoc;species:Leuconostoc gelidum; 0.894368747 1.036941501 0.912439866 0.960071407 0.901746729 0.910718971 0.912083623 0.923670251 0.939534144 0.883940925 0.915754464 0.919408989 0.88735501 0.855910126 0.886671421 0.848127135 0.908094702 0.91644786 189194071 ligninase Pyrenophora tritici-repentis Pt-1C-BFP Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 1.220496972 1.19251452 1.184747442 1.201755431 1.175851711 1.219500746 1.179306501 1.221907334 1.189223712 1.176627211 1.182543883 1.195653788 1.170230342 1.190677219 1.187608736 1.200480031 1.201531518 1.175356086 359765357 cutinase Gordonia polyisoprenivorans NBRC 16320 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia polyisoprenivorans; 1.216749619 1.204231501 1.204468794 1.237825912 1.19251848 1.216213975 1.210063644 1.217313425 1.203062604 1.180888402 1.178627529 1.226252965 1.186409519 1.182792388 1.197221216 1.222496948 1.224087262 1.181597257 145018473 pme_Cdeg Magnaporthe grisea 70-15 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 1.205346539 1.157828984 1.151820027 1.22482267 1.137840603 1.247796046 1.127694804 1.149669862 1.188163541 1.156849636 1.152060822 1.146394533 1.136812084 1.126545563 1.120589867 1.134946452 1.19352597 1.166155844 197696888 terc Streptomyces sp. SPB74 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 1.073056713 1.063282021 1.052849965 1.04159074 1.033294104 1.053825547 1.045980765 1.044421029 1.035593882 1.047553044 1.043799845 1.05509197 0.998189544 1.028442714 0.975080663 1.047259392 1.059084221 1.076716718 374922749 arra uncultured bacterium Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 0.827173141 0.810713533 0.818205725 326331457 merb Nocardioidaceae bacterium Broad-1 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae; 0.839561974 0.823570925 0.793258653 0.793396854 0.803980675 0.840956008 85688078 B_lactamase_A Erythrobacter sp. NAP1 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter; 1.050178785 1.034029855 0.985724971 1.042321563 0.988362149 1.085492818 0.991041019 1.031570191 1.017504484 1.005644554 1.175785185 1.017090536 0.966516482 1.007049728 0.945968763 0.974108312 0.995108737 1.005084999 221738326 acetylglucosaminidase Agrobacterium vitis S4 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium vitis; 0.832097961 0.840162497 0.834930275 0.807616686 336252094 rgl Halopiger xanaduensis SH-6 Carbon Cycling Carbon degradation Pectin superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halopiger;species:Halopiger xanaduensis; 0.91298035 0.946052489 0.923314933 0.95572184 0.929010389 0.895682563 0.932552486 0.916885052 0.902853823 0.863432231 0.918746389 0.926799333 0.834916251 0.840621786 0.811981127 0.855151581 0.942492527 0.977509393 268313180 acetylglucosaminidase Thermomonospora curvata DSM 43183 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Thermomonosporaceae;genus:Thermomonospora;species:Thermomonospora curvata; 0.896755314 0.777991821 0.859690046 0.868885563 0.855624128 0.862764432 0.891917838 0.901937837 0.854376436 0.833388531 0.806097651 0.817102393 0.872291693 145613786 phospholipase_A2_fungi Magnaporthe oryzae 70-15 Carbon Cycling Carbon degradation Phospholipids superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 1.268012652 1.226653614 1.236581311 1.260103034 1.203807511 1.281720986 1.189156437 1.211423751 1.232065593 1.232505781 1.235869976 1.229392669 1.215461288 1.222847274 1.183528028 1.210529392 1.271234698 1.230743101 318081516 mannanase Streptomyces sp. SA3_actF Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 1.001175526 1.20855695 0.956490603 0.966367035 0.96955444 0.983820937 0.956382406 0.949638297 0.965302698 0.994408537 0.975618486 0.957817045 0.91837273 0.939377426 0.882183047 0.930276755 0.960572772 0.936036541 556331 mauab Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Methylophilales;family:Methylophilaceae;genus:Methylophilus; 0.863544928 0.901615879 0.847231368 0.897799755 0.864502019 0.805727569 0.845593808 0.882693405 0.878554475 0.855883801 0.800084535 0.86813391 0.864427925 0.859493769 0.873489979 199594023 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.066352583 1.081518892 1.081908763 1.061761221 1.03842531 1.069487336 1.02799191 1.019855527 1.025649773 1.032584299 1.051883408 1.043465608 1.034726683 1.003021261 0.999672178 1.018931769 1.094732814 1.053239616 374326810 por_DiC4HB Pyrobaculum sp. 1860 Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum; 1.044407775 0.999809324 0.954066407 1.045920215 0.969365906 1.014090047 0.968731517 1.008450408 1.050540168 1.003063692 0.98410836 1.00784837 0.956946182 0.972821464 0.951843371 1.004645701 1.033828324 0.997001855 110679695 gdh Roseobacter denitrificans OCh 114 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter denitrificans; 0.859872274 0.795098458 0.836702533 0.875352947 0.846991642 0.80902681 0.838667221 0.849564236 0.825439784 0.833632107 0.872454273 0.830420185 0.819026498 0.878634918 385741986 soxY Bradyrhizobium sp. WSM1253 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.910959346 0.974202006 0.958495557 0.934717551 0.994011185 0.993193719 0.940852852 0.845200899 0.922224953 1.054770389 1.018585591 0.926744295 0.95475376 0.98035058 0.897763816 0.922868932 0.986794637 0.959543653 116698348 mdlc Syntrophobacter fumaroxidans MPOB Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophobacteraceae;genus:Syntrophobacter;species:Syntrophobacter fumaroxidans; 1.09597978 1.113729176 1.085049071 1.104233 1.087097558 1.093299297 1.067934375 1.069295455 1.105313118 1.088161092 1.073263513 1.087043197 1.07573448 1.111978952 1.060751696 1.0740877 1.097620077 1.108327533 140713422 nasa uncultured marine bacterium Nitrogen Assimilatory N reduction NA superkingdom:Bacteria; 0.812632335 0.820757758 334128506 nifh Centipeda periodontii DSM 2778 Nitrogen Nitrogen fixation NA superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Centipeda;species:Centipeda periodontii; 1.181148869 1.189614171 1.186113674 1.183384301 1.140914158 1.13959332 1.138049644 1.166291241 1.156446093 1.146293226 1.186632237 1.173801019 1.127068237 1.104097456 1.13272521 1.113972996 1.173398445 1.126308816 156933895 tehb Enterobacter sakazakii ATCC BAA-894 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Cronobacter;species:Cronobacter sakazakii; 0.875031177 0.816989873 0.864617184 0.887112957 0.900393162 0.799795127 0.847627211 0.909387561 0.868504874 0.85359808 0.819774703 0.866779334 0.834583428 0.832507995 209487022 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.8199268 0.830906942 0.834393417 0.813167392 0.837683436 0.80741353 0.825906245 0.815544387 0.826674389 285026905 tfda uncultured bacterium Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria; 1.062220341 1.027787888 1.054315288 1.075956557 1.000670049 1.068636756 1.028759147 1.065493638 1.052295874 1.028650377 1.012812539 1.066801317 0.998956659 1.035858658 0.995452189 1.044401005 1.045068865 1.020032195 302506697 p450aro Arthroderma benhamiae CBS 112371 Organic Remediation Aromatics polycyclic aromatics superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Arthrodermataceae;genus:Arthroderma;species:Arthroderma benhamiae; 1.095228361 1.050157162 1.04921368 1.020763537 1.073439762 1.024632856 1.023028845 1.016394968 1.048224455 1.029153094 1.001461393 0.953375854 0.994563273 1.0064233 56963256 nfsa_2 Bacillus clausii KSM-K16 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus clausii; 0.8451899 0.816112708 113945200 terc Salinispora tropica CNB-440 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora tropica; 1.361148559 1.294956616 1.332565935 1.352876411 1.283307764 1.337918361 1.306133087 1.314889816 1.33061749 1.291420241 1.297376061 1.331240551 1.294965637 1.260214025 1.273067097 1.308018012 1.342757877 1.292253932 227874927 sqr Mobiluncus mulieris ATCC 35243 Sulfur Sulfide Oxidation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Mobiluncus;species:Mobiluncus mulieris; 0.884862779 0.858048058 0.864411314 0.851238223 0.82736827 0.847056795 0.855476591 0.819145393 0.854352864 0.851566734 0.834803173 0.895224081 0.801385391 0.860755646 142853341 amyA Aeromonas salmonicida subsp. salmonicida A449 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas salmonicida; 0.982403576 0.95312126 0.819319142 0.938449254 0.893372435 0.916405052 0.856812677 0.848961491 0.917125271 0.921617882 0.886016937 0.893052997 0.844629368 0.905670118 0.887629852 0.899390761 0.955214945 0.919658982 310790899 amyA Glomerella graminicola M1.001 Carbon Cycling Carbon degradation Starch superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Glomerellaceae;genus:Glomerella;species:Glomerella graminicola; 0.77295903 0.828778705 0.791418645 0.785335422 0.809688559 0.812087155 229760961 cellobiase Streptosporangium roseum DSM 43021 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 0.829115472 0.852139252 0.868891161 0.839333697 0.795294216 0.864420324 0.838291524 0.853590968 0.869147084 0.821949178 0.836457825 0.867622094 0.861954514 301154661 norb Haemophilus parainfluenzae T3T1 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Haemophilus;species:Haemophilus parainfluenzae; 1.096453535 0.947774134 0.940894035 1.055045731 1.029822932 1.053579262 0.960070455 0.992426282 0.991788231 0.909472013 0.827175435 1.019755972 0.986932767 1.089843455 0.968342212 0.940372181 1.078634182 0.957185093 190014392 terc Stenotrophomonas maltophilia K279a Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 1.148360747 0.979062831 0.937451151 1.01277859 0.896684463 1.170519639 0.906168535 0.955653177 0.962218469 0.964556654 0.923633739 0.949655821 0.877610467 0.941647892 0.904996774 0.933568572 1.086433115 0.985126508 296426505 phenol_oxidase uncultured bacterium Carbon Cycling Carbon degradation Lignin superkingdom:Bacteria; 0.788189267 0.861733062 0.846521556 0.813383352 0.813213134 0.826134756 227102854 bphF1 Gordonia bronchialis DSM 43247 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia bronchialis; 0.976497513 1.017134241 1.009119502 0.988320402 0.920416395 1.051145048 0.930840183 0.981708543 0.934534852 0.994124126 1.02571444 0.959353576 0.867885566 0.9269289 0.979813105 0.959550778 0.982346356 1.02922317 338751834 tktA Acetobacter tropicalis NBRC 101654 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acetobacter;species:Acetobacter tropicalis; 1.194379156 1.169120734 1.166717527 1.162540005 1.150490555 1.172194583 1.157344715 1.132014663 1.155611486 1.142297495 1.15231931 1.149106082 1.133391424 1.107464698 1.120371724 1.131957543 1.181469403 1.166705549 315312361 acetylglucosaminidase Actinomyces sp. oral taxon 180 str. F0310 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 180; 0.990570056 1.001627907 0.981692917 1.007654509 1.036936852 1.003395561 0.95763241 0.943967171 0.94674632 0.979577813 0.930792302 0.95169065 0.945296451 0.944605317 0.930559425 0.92852625 0.998091994 0.972782776 157381244 protease_serine_fungi Dactylellina haptotyla Carbon Cycling Carbon degradation protein superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Orbiliomycetes;order:Orbiliales;family:Orbiliaceae;genus:Dactylellina; 1.220660624 1.291192165 1.158457405 1.283365285 1.242741204 1.175398967 1.271182825 1.264695235 1.297555413 1.192957775 1.149312545 1.207302903 1.257365559 1.261012992 1.099120078 1.151990377 1.224318755 1.25469014 116671967 atzb Arthrobacter sp. FB24 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 0.941215119 0.942505572 1.079174366 0.953290893 0.886106429 0.870180319 0.925873797 0.887760267 0.905591061 0.980503068 0.940932342 0.910634931 0.874818079 0.895608797 0.803164449 0.864861439 0.969884719 0.885031035 118501338 b_lactamase Pelobacter propionicus DSM 2379 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Pelobacteraceae;genus:Pelobacter;species:Pelobacter propionicus; 0.7911579 0.824010438 117619830 mer Aeromonas hydrophila subsp. hydrophila ATCC 7966 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas hydrophila; 0.937066566 0.88284434 0.910975758 0.897492975 0.8507567 0.920127308 0.84172953 0.901487291 0.944484573 0.907307318 0.894082594 0.886012913 0.854973339 0.873849623 0.79682169 0.846396607 0.926701772 0.91935391 89345938 arylest Rhodoferax ferrireducens DSM 15236 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Albidiferax;species:Albidiferax ferrireducens; 1.173318561 1.117966981 1.1316262 1.158834389 1.100833694 1.154029178 1.102727738 1.163281795 1.140025317 1.123953555 1.11360657 1.145537095 1.090612781 1.123647098 1.098338676 1.141253634 1.157190861 1.131360319 307633085 cysJ Ferrimonas balearica DSM 9799 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Ferrimonadaceae;genus:Ferrimonas;species:Ferrimonas balearica; 0.932660894 0.922987005 0.881059133 0.900976492 0.928647339 0.902612286 0.855413956 0.921857514 0.88214751 0.884722888 0.91770115 0.888167008 0.898690128 0.86789408 0.845337905 0.843020926 0.920812254 0.892177572 357045266 xylanase Paraprevotella clara YIT 11840 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Paraprevotella;species:Paraprevotella clara; 1.001040432 0.8580297 0.82444616 0.809074023 169609659 RgaE Phaeosphaeria nodorum SN15 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Phaeosphaeriaceae;genus:Parastagonospora;species:Parastagonospora nodorum; 0.952724337 0.912867234 0.908044929 0.926985686 0.927772863 0.929087689 0.864021969 0.945394051 0.940731744 0.883191569 0.892808214 0.861429658 0.989028783 0.875929351 0.876052038 0.948294797 385679657 ppx Amycolatopsis sp. ATCC 39116 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis; 1.088404704 1.11101241 1.10247185 1.082460989 1.028617968 1.07063731 1.036108019 1.067169834 1.108659674 1.088135586 1.069407175 1.090776291 1.02139886 1.023611772 0.995801422 1.039308912 1.107178897 1.110529738 294677380 amyA Rhodobacter capsulatus SB 1003 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter capsulatus; 1.034090577 1.053388037 1.00690173 1.017111733 0.944696107 0.976171791 0.971536907 0.970000889 1.000873119 0.984343034 0.976080181 0.996704878 0.935753423 0.95391856 0.902215333 0.963565591 1.023217398 1.004614719 334125390 cysJ Enterobacter hormaechei ATCC 49162 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter hormaechei; 1.342995993 1.367090179 1.309375221 1.321223508 1.33096555 1.364800634 1.278719271 1.281167849 1.300514184 1.326613208 1.30054535 1.34232762 1.320819955 1.294359355 1.269459097 1.314271252 1.354534803 1.31293085 50982462 pmoa uncultured bacterium Carbon Cycling Methane Methane oxidation superkingdom:Bacteria; 0.918538771 0.881044595 0.968868957 0.851841674 0.925983575 1.022284724 0.849208182 0.872405026 0.929166621 0.87364396 0.875794891 0.832365351 0.817235885 0.849449537 0.926899292 0.962411571 0.913054177 148474840 napa uncultured bacterium Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria; 0.773500428 0.903253691 0.822013736 0.85372502 0.832976423 0.834108946 0.828294349 0.897561172 0.859362825 0.808865902 0.89072688 0.863784864 0.784405251 0.874181699 118424427 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.903115069 0.90742771 0.894583948 0.947848849 0.935623654 0.942560214 0.914235949 1.006006663 0.934092971 0.93608273 0.917826349 0.893055624 0.924649934 0.969903257 0.885938254 0.923390292 0.888187547 0.959753518 103484203 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 1.176684188 1.173816039 1.194269202 1.178938495 1.175884794 1.164323454 1.176465492 1.176653889 1.15649382 1.154434691 1.176651874 1.192103158 1.198340511 1.155162311 1.207189281 1.173873023 1.265687233 1.19062807 118175273 urec Mycobacterium smegmatis str. MC2 155 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 0.88508912 0.861569673 0.794742866 0.876079517 0.820808362 0.851317406 0.867539799 0.876923537 0.873163138 0.908463043 0.803133518 0.848336584 0.798766324 0.837527173 0.826730533 0.857545438 0.88029357 320105024 mer Isosphaera pallida ATCC 43644 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Isosphaera;species:Isosphaera pallida; 1.164903274 1.188310724 1.144732424 1.17904876 1.15966017 1.187720791 1.171948663 1.173161474 1.138823937 1.148166782 1.160607093 1.161853959 1.155323788 1.156340949 1.150547614 1.161187705 1.158777952 1.142457573 313199944 ppx Methylovorus sp. MP688 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Methylophilales;family:Methylophilaceae;genus:Methylovorus; 1.163703545 1.178319386 1.142048669 1.17191354 1.169724461 1.177952687 1.161515708 1.216959528 1.160916623 1.138542526 1.180682162 1.159300527 1.150571105 1.152510366 1.141429441 1.172092868 1.15468055 1.140991612 319798783 ppk mine drainage metagenome Phosphorus Polyphosphate synthesis NA 1.007107165 1.008546362 0.971644208 0.99819043 1.028286323 1.058258914 1.051335599 0.966458663 0.981745091 1.051020939 1.017272239 0.969576028 0.995513895 1.016749593 0.973457393 1.012964991 1.024607096 1.050755372 347580877 ppk Gluconacetobacter xylinus NBRC 3288 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter xylinus; 0.922075944 0.844389322 0.938416659 0.959799976 0.922686141 0.947346702 1.051509984 0.956288417 0.856958165 0.947010251 0.94778355 0.942725613 0.930566454 0.888986497 0.882314969 0.897017661 0.933181878 0.902420341 53987088 urec Arthrobacter sp. T11-6 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 0.813413315 0.821486744 0.805558549 0.913587235 0.83048787 0.835023699 0.852956783 0.823964324 3157524 nifh unidentified nitrogen-fixing bacteria Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 1.556049017 1.53213949 1.524896432 1.523588178 1.495396715 1.549175388 1.490827513 1.543819277 1.506839164 1.50874355 1.51743339 1.542728576 1.483055347 1.493486085 1.498288102 1.531386391 1.515256773 1.509393734 315001626 aoxb uncultured alpha proteobacterium Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 0.873304651 0.918902441 0.906747748 0.847671993 0.895352565 0.947155259 0.862714216 0.855589063 0.882543549 0.86020226 0.866623852 0.844636995 0.875760267 0.905109029 0.869059937 0.837915802 0.887104615 0.89726415 164455302 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 0.788630271 0.807897117 0.819590471 0.851628139 0.829731799 0.818704698 0.807556296 0.800125183 72121297 pcpe Ralstonia eutropha JMP134 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 0.928742314 0.839251141 0.853043667 0.883875398 0.914517572 0.84307888 0.816894665 0.883603761 0.913890962 0.796817568 0.810474227 0.894962696 0.887447315 76056973 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.870539966 0.856470866 0.839041979 0.828707012 0.857516035 0.884765346 67540592 p450aro Aspergillus nidulans FGSC A4 Organic Remediation Aromatics polycyclic aromatics superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 1.108538155 1.065027729 1.074208985 1.138495808 1.086462222 1.08676772 1.088763065 1.112656959 1.088500634 1.087258435 1.06769361 1.085843622 1.109377486 1.066751724 1.036647927 1.069198744 1.143907022 1.070509282 158331912 phn Azorhizobium caulinodans ORS 571 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Azorhizobium;species:Azorhizobium caulinodans; 1.047600341 1.025956333 0.946948976 1.065293598 0.974955897 1.020782503 0.990195029 0.995566597 0.975442741 1.028451974 0.962785316 1.00614754 0.971227981 0.958021647 0.911157816 0.960575956 1.033560265 1.023661954 209872369 nosz Oligotropha carboxidovorans OM5 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Oligotropha;species:Oligotropha carboxidovorans; 0.986197003 0.942909278 0.976811112 0.964339437 0.985963909 0.99205783 0.987051683 0.978258453 0.979571533 0.966805326 0.970285304 0.98842673 0.908912939 0.907784801 0.938657065 0.908494068 0.963712267 0.968298724 167417520 amyA Anaeromyxobacter dehalogenans 2CP-1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter;species:Anaeromyxobacter dehalogenans; 1.081018485 1.08273654 1.066154229 1.059771085 1.045331642 1.068779542 1.024963998 1.028227125 1.079497687 1.069507017 1.063630379 1.06152704 1.044122567 1.064446958 1.02770213 1.067300067 1.06424187 1.064354924 371719467 CsoS1_CcmK Caldithrix abyssi DSM 13497 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;genus:Caldithrix;species:Caldithrix abyssi; 0.947394003 0.930376189 0.966382859 0.910004272 0.940739438 0.944408199 0.954501466 0.956316086 0.960201265 0.932408281 0.951702639 0.93431732 0.928485887 0.90995045 0.923350886 0.89983308 0.974659656 196249146 cellobiase Geobacillus sp. G11MC16 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 1.002807586 1.021022409 0.991031296 1.006569567 0.990151292 1.145310035 0.982529998 0.987052434 0.989069699 1.047989221 0.994146109 1.004840916 0.97377859 0.976727793 0.974702683 0.999689731 1.010728994 1.005817657 307770321 PRI Roseibium sp. TrichSKD4 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseibium; 0.893664219 0.856482358 0.911139139 0.900344891 0.955474702 0.882242457 0.935709099 0.914869217 0.908281143 0.867946572 0.963388986 0.870934847 0.863646179 0.83436259 0.855189124 0.821069176 0.920585213 0.900192209 311227742 pcag Frankia sp. EuI1c Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 1.015048369 1.024428972 0.992396369 1.03712857 0.976824501 1.012827273 1.007686882 1.013985271 0.994968238 0.947609701 0.986063507 1.010449554 0.976946552 0.991568319 0.981538276 1.015809516 1.011720019 0.97012568 312112804 rubisco Rhodomicrobium vannielii ATCC 17100 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Rhodomicrobium;species:Rhodomicrobium vannielii; 0.822182084 0.842850715 0.820379321 0.904484531 0.835871465 0.802724903 0.877738452 0.877856632 0.814724265 0.863755325 0.837607997 0.8530958 83749274 nagg Ralstonia solanacearum UW551 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 0.986623889 0.966776922 1.033926471 1.013395093 1.023576147 1.022735782 1.049536655 1.05137542 1.037335603 0.993320414 1.0112933 1.047644907 0.935476979 0.916384056 0.944803805 0.948543172 1.01075831 0.993050447 114799913 tfda Hyphomonas neptunium ATCC 15444 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Hyphomonas;species:Hyphomonas neptunium; 0.866480266 0.915450323 0.87548506 0.839999187 0.873524558 0.879840465 0.818235387 0.898427722 0.876083121 0.788394508 0.810567556 0.818341989 0.840234532 0.811209822 0.881719071 0.907031568 13898437 dsra uncultured phenanthrene mineralizing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 0.915213193 0.89012047 0.808831113 0.897383796 0.887615068 0.899525048 0.886164048 0.901038435 0.887828121 0.872568574 0.83885843 0.87520637 0.872185668 0.862152463 0.879922796 0.84249263 0.902708202 0.896435842 262083615 bphF1 Gordonia bronchialis DSM 43247 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia bronchialis; 0.921958656 0.941804303 0.910038408 0.905829226 0.908156371 0.87556895 0.881217392 0.849997773 0.884021903 0.960858372 0.911328416 0.89098511 0.849600758 0.920575434 0.875359341 0.88042974 0.933235371 0.963212549 374608813 cutinase Mycobacterium tusciae JS617 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tusciae; 1.11056313 1.124535867 1.079510127 1.117796275 1.090124667 1.100350839 1.078390008 1.086424238 1.108706593 1.10469471 1.083150883 1.085446711 1.084386168 1.098963228 1.066324053 1.120375262 1.123012875 1.088348278 367048027 dehh109 Thielavia terrestris NRRL 8126 Organic Remediation Chlorinated solvents NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Thielavia;species:Thielavia terrestris; 0.910951708 0.855123742 0.85704191 0.858221658 0.825451553 0.805059437 0.786780468 1.002375626 0.857610004 37676759 chitinase Vibrio vulnificus YJ016 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio vulnificus; 0.814108335 0.948547037 0.926473595 0.956686683 0.925822797 0.954840448 0.919343965 0.91835579 0.909697231 0.957912958 0.924600366 0.891230145 0.886018281 0.850572301 0.870790866 0.88049555 0.955554952 0.928845773 225042543 cellobiase Clostridium asparagiforme DSM 15981 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium asparagiforme; 1.299150825 1.279825874 1.28172575 1.318863958 1.288291823 1.300693026 1.292012091 1.295999531 1.300174338 1.280244118 1.271957976 1.29869709 1.256313524 1.233783797 1.263682508 1.269349282 1.287349767 1.257595768 355356405 codh Desulfotomaculum gibsoniae DSM 7213 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum gibsoniae; 0.824146508 0.899034463 0.85226569 270511274 chitinase Streptosporangium roseum DSM 43021 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 0.779024816 0.81226579 0.800060405 0.80052371 0.773743372 0.804788868 0.79319533 0.785940478 0.811744659 0.778288272 0.838489505 0.830186058 321269700 fthfs Streptococcus cristatus ATCC 51100 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus cristatus; 0.930616949 0.826566451 0.827194452 0.969738898 0.888406747 0.97909462 0.918525236 0.86367898 0.883741664 0.888047616 0.908643484 0.948927663 0.922637496 0.827312947 0.867691229 0.974254039 0.995209486 0.865112416 307544223 terc Halomonas elongata DSM 2581 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas;species:Halomonas elongata; 0.843997569 0.789664052 0.806562956 0.816891654 358451407 linb Marinobacter manganoxydans MnI7-9 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter manganoxydans; 1.003551884 0.940433315 0.975400231 1.018460299 1.023261351 1.051124044 0.98497444 1.027570695 0.947906017 0.996766555 0.976115597 1.026411067 0.977194122 0.950728263 0.896751993 0.938151456 1.003292193 0.977696747 325950845 amyA Nocardioidaceae bacterium Broad-1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae; 1.041640446 0.974903281 0.868413751 0.958601954 0.94736491 1.00463454 0.920453326 1.009709837 0.985249058 0.95316628 0.957445527 0.923729736 0.932699726 0.979261301 0.899275296 0.930589415 0.904398055 0.988062729 30269579 nasa uncultured bacterium Nitrogen Assimilatory N reduction NA superkingdom:Bacteria; 1.058068716 1.027445442 0.985549154 1.037399917 1.009774118 1.005962795 1.00053453 1.026449056 1.043139662 1.035696362 0.967664395 1.000926082 0.940163574 0.965465185 0.916866388 0.95306094 1.025786212 1.049939741 367040745 phenol_oxidase Thielavia terrestris NRRL 8126 Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Thielavia;species:Thielavia terrestris; 0.997938284 0.979327326 0.997103225 1.031915512 0.995459616 1.000326047 0.98530067 0.933688959 1.006645398 0.959926476 0.981678437 0.987795429 0.931982645 0.928356415 0.912268534 0.916429059 1.002156488 0.957660503 12802200 mcra uncultured archaeon 85A Carbon Cycling Methane Methanogenesis superkingdom:Archaea; 1.011009058 1.028197311 0.996588728 0.985426192 1.00440493 1.035564842 0.998353854 0.963440408 0.977175749 1.021657657 1.028756496 0.998461518 1.009377795 1.036113466 1.013463451 1.019913047 0.994505337 1.023475356 77995432 CsoS1_CcmK Carboxydothermus hydrogenoformans Z-2901 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Carboxydothermus;species:Carboxydothermus hydrogenoformans; 0.816627566 0.797195046 0.822343331 0.792117134 0.832435204 340783113 SoxB Acidithiobacillus caldus SM-1 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus caldus; 1.052624925 1.007024576 1.023592673 1.058394144 1.010351792 1.032895334 0.996933641 1.03251406 1.042053713 1.033195782 0.978136388 1.007592679 0.993383125 0.996968236 1.013670469 0.994137431 1.056215338 1.031934013 376380529 cysJ Klebsiella oxytoca 10-5243 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella oxytoca; 0.808665445 0.822957242 0.773915331 0.836463675 0.824124142 0.862707389 0.801372975 0.817690484 0.818068564 0.766739141 146191128 nirk Bradyrhizobium sp. ORS278 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 1.189623538 1.225789706 1.238818864 1.183435448 1.199137539 1.235221736 1.175026622 1.171900893 1.167962877 1.181208136 1.185853318 1.223008555 1.180681546 1.175995322 1.175455235 1.197000269 1.196283296 1.184328221 407696308 chnd Alcanivorax dieselolei B5 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax;species:Alcanivorax dieselolei; 0.913430931 0.926629431 0.905053108 0.933901477 0.887956648 0.920582061 0.91778481 0.89480236 0.866717972 0.87398266 0.93217 0.888563755 0.874891829 0.900076513 0.839028996 0.884932803 0.927419565 0.963090783 62468094 bco uncultured bacterium Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria; 0.814951557 0.902454524 0.814670779 0.848161653 0.860852903 0.842790447 0.917789702 0.875220579 0.808288785 0.82557439 0.829859078 0.847743551 0.841742617 0.819447503 145575331 alginase Pseudomonas mendocina ymp Carbon Cycling Carbon degradation Alginate superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas mendocina; 1.122540288 1.026534502 0.945649559 0.977761466 0.98416865 0.960625228 0.997316637 0.953504723 1.062496143 1.010553348 1.047076745 1.008916442 0.984776625 0.984360177 0.943170693 0.953885764 0.993335123 0.961278194 222543132 phytase uncultured bacterium Phosphorus Phytic acid hydrolysis NA superkingdom:Bacteria; 0.999146989 0.96834765 0.986932478 1.027757394 1.00676059 0.991435612 1.000777053 1.032741078 1.021622615 0.98017189 0.994132346 1.020291262 0.947004557 0.962223355 0.877557043 0.94310051 1.01378993 1.010127003 392951842 one_ring_23diox Hydrocarboniphaga effusa AP103 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Sinobacteraceae;genus:Hydrocarboniphaga;species:Hydrocarboniphaga effusa; 0.844785357 0.84578181 0.875836388 0.838314012 0.833300682 0.839270132 0.845517204 0.829333962 0.81328969 0.873530452 0.887360986 373235161 xylanase Niabella soli DSM 19437 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;genus:Niabella;species:Niabella soli; 0.905189566 0.881894187 0.930212859 0.943575519 0.911515226 0.905998181 0.944269314 0.953742938 0.920282711 0.897382044 0.914125923 0.948016831 0.942929744 0.885632708 0.856922628 0.888957436 0.945469631 0.889169237 379708164 amyA Nocardia cyriacigeorgica GUH-2 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia cyriacigeorgica; 0.805604838 0.873765499 0.835484317 0.821138455 0.79953763 0.821083735 0.811094588 0.846651065 0.825954423 0.844788696 358637762 ppk Azoarcus sp. KH32C Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 0.877534149 0.894005036 0.847746619 0.881119974 0.864456336 0.911564684 0.872498793 0.883142757 0.873290976 0.819003466 0.836474045 0.816922888 0.836877075 0.843391459 0.885482209 0.898417171 0.866533869 150014824 rubisco uncultured beta proteobacterium Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria; 0.921821703 0.870315493 0.859346302 0.896970864 0.831119048 0.865279735 0.87868357 0.881646555 0.858660862 0.850047449 0.848462361 0.933429268 0.894339839 254393095 chitinase Streptomyces clavuligerus ATCC 27064 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces clavuligerus; 0.790173585 0.825013131 0.838997941 0.82866489 0.844274037 0.838355056 0.880459544 0.801700246 0.850633255 70930931 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.888269199 0.86838627 0.835742894 0.887843914 0.854638964 0.883750504 0.876108312 0.830104905 0.83052876 0.906414558 0.811024088 0.862078362 0.849869724 165880055 exoglucanase uncultured fungus Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi; 0.813418336 0.803938774 0.82389191 0.807117695 0.801523432 0.789384207 0.837500683 0.844864441 0.77323885 0.824255114 0.800066906 0.866641735 338171761 mhpa Cupriavidus necator N-1 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 0.979553717 1.000142469 0.980120922 0.97832394 0.924849962 0.993706701 0.918531047 0.994793674 1.007708155 0.954675557 0.975429044 0.981858323 0.907394394 0.971333189 0.924852729 0.943075095 0.957252241 1.003629989 292900806 cysJ Erwinia amylovora ATCC 49946 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia amylovora; 1.141793423 1.150691693 1.118491731 1.137777763 1.124610536 1.135839158 1.128804549 1.121596128 1.119070309 1.128398934 1.125837425 1.131928725 1.075623577 1.088353461 1.045483182 1.118018967 1.104668316 1.133268779 73534331 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 1.039984468 1.050634679 1.021997783 1.032189178 1.080875016 1.073148284 1.047056218 0.970813524 1.014259373 1.138500823 1.234172452 1.100619287 1.052542263 0.936835501 0.923727488 0.964079554 1.006856565 1.013175313 331699733 nhh Pseudonocardia dioxanivorans CB1190 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Pseudonocardia;species:Pseudonocardia dioxanivorans; 1.160823086 1.149613628 1.111743664 1.144023851 1.126056598 1.143085944 1.090754442 1.111752553 1.110616854 1.110731315 1.105348865 1.110387708 1.094831504 1.100057992 1.090771846 1.094564074 1.143873802 1.128111476 384067432 amyA Fibrella aestuarina BUZ 2 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Fibrella;species:Fibrella aestuarina; 0.812104381 0.849513775 0.853441293 0.866152161 0.905716372 0.880379906 0.88553795 0.821716052 0.932580675 0.871241441 0.883999891 0.877250259 0.841496599 0.794893176 0.876196877 0.864089444 0.903793628 6561863 amyA Emericella nidulans Carbon Cycling Carbon degradation Starch superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella; 0.771030476 0.790219353 259479381 rgl Aspergillus nidulans FGSC A4 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 0.784783375 0.82589238 0.859250015 0.777976028 0.822476433 0.853619613 0.824066614 0.83520097 0.82711361 0.887486982 0.867147367 0.819378968 0.893903487 0.840095156 0.842448669 0.829981475 0.888244756 285878261 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.190665666 1.134026074 1.13174 1.155615424 1.136809533 1.172521286 1.12245018 1.136440121 1.120716769 1.116337957 1.140558615 1.138279301 1.108001677 1.14873855 1.077572529 1.132878002 1.162313418 1.110779001 377562630 amyA Gordonia sputi NBRC 100414 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia sputi; 1.029763719 1.025199073 1.072496639 1.239239937 1.02788636 0.984312573 1.003074854 1.04106053 1.015634411 0.996779358 1.02225516 1.053571204 1.031144916 0.961651412 1.006018602 1.0005061 1.00962426 0.996070371 90199375 scnabc Mycobacterium vanbaalenii PYR-1 Organic Remediation Others NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 0.958366532 1.078110504 0.928627289 0.966486511 1.025254119 1.001825385 0.942990213 0.941054023 0.927617117 0.997650784 0.908991694 0.930761833 0.976593873 1.028360415 0.968536955 0.921991711 0.979926656 1.065504446 219810259 dsrB uncultured bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.806320437 0.800142404 0.809426396 0.798707588 0.793145087 78222053 amyA Geobacter metallireducens GS-15 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter metallireducens; 0.815171715 0.780782722 0.822401054 0.843632229 0.835786956 0.820941012 0.782506583 0.797457313 0.768393817 219860240 amyA Arthrobacter chlorophenolicus A6 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 1.054992715 1.057627504 1.056223018 1.050361654 1.017596182 1.097378204 1.032867161 1.070776673 1.02289311 1.063176021 1.030820202 1.005176149 1.012884502 1.044585176 0.985614602 1.025073929 1.073072372 1.078491223 46559012 nrfa Desulfovibrio salexigens Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 0.803156826 0.809420611 0.831939199 0.874903485 0.818806276 0.838128392 327194728 GAPDH_Calvin Rhizobium etli CNPAF512 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 0.859796735 0.937140118 0.890230687 0.870907345 0.908033963 0.901137537 0.8713463 0.840751921 0.819901053 0.890350257 0.933717064 0.852738048 0.856083954 0.840192898 0.841277256 0.880284294 0.878458138 0.911543704 116612728 catechol Arthrobacter sp. FB24 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 1.023100945 1.064147628 1.044479676 1.02053363 1.02867647 1.208732622 1.019181917 0.934181621 1.006629132 1.04553395 1.062648588 1.037589692 0.964857269 1.081106871 1.059170323 1.042693299 1.090439693 1.071227387 389864079 amyA Modestobacter marinus Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Geodermatophilaceae;genus:Modestobacter; 0.993868579 1.02931694 0.990203808 1.004834175 0.99426397 1.03866277 1.005151209 1.013308896 0.97246857 1.021682469 0.982344256 0.997141565 0.964277502 0.987917167 0.915433316 0.98002763 0.979056546 1.030388018 340772016 acetylglucosaminidase Propionibacterium acnes SK182B-JCVI Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium;species:Propionibacterium acnes; 1.087775897 1.108685247 1.088048108 1.107137164 1.070228055 1.103470887 1.050569217 1.099068798 1.057645116 1.057639126 1.083346004 1.076212596 1.067341641 1.058464796 1.031911388 1.065668223 1.097464436 1.10232945 170144335 amyA Burkholderia graminis C4D1M Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia graminis; 1.014733742 1.026785287 0.976289571 1.007922216 0.970022285 1.001778602 0.965671099 0.995529928 0.972251027 0.955789602 0.965931791 0.978936409 0.95409579 0.971829943 0.952272084 0.977196398 1.037048568 1.00062905 33391477 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.877007248 0.839313013 0.81234977 0.855352549 0.783463757 0.843928198 0.820220739 0.829242887 0.905391834 329889707 mer Brevundimonas diminuta ATCC 11568 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Brevundimonas;species:Brevundimonas diminuta; 0.995075246 1.006547989 0.994367702 0.991290058 0.978791425 0.977076979 0.949831447 0.935314736 0.995066158 0.954162872 0.956475028 0.97637057 0.941580722 0.948952267 0.935764165 0.922398935 0.987470416 0.994330712 316981166 nirk uncultured proteobacterium Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria; 1.205810724 1.172285074 1.172205995 1.201627241 1.190895508 1.188852457 1.15602617 1.194955765 1.178214163 1.150743122 1.153196248 1.208332295 1.164852053 1.134529459 1.121984539 1.15842939 1.165584115 1.153171318 81300070 TIM Synechococcus elongatus PCC 7942 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus;species:Synechococcus elongatus; 1.311916697 1.281963974 1.280999765 1.324858003 1.279420518 1.290008878 1.279684953 1.298616563 1.282124766 1.263652794 1.277609991 1.292816415 1.266046827 1.264044381 1.25994195 1.297524196 1.281764914 1.244398469 381383687 amyA Caldilinea aerophila DSM 14535 = NBRC 104270 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Chloroflexi;class:Caldilineae;order:Caldilineales;family:Caldilineaceae;genus:Caldilinea;species:Caldilinea aerophila; 0.767696845 0.849027462 0.887157111 0.815232462 0.837829795 0.890820312 0.859595903 0.826920376 0.84436175 0.797579193 0.842992124 0.830473535 56798757 catechol_b uncultured bacterium Organic Remediation Aromatics Other aromatics superkingdom:Bacteria; 1.175696727 1.207739569 1.135397158 1.166927879 1.148464499 1.181475211 1.128483863 1.145815432 1.101955476 1.122457964 1.111472886 1.160910023 1.134283486 1.113915649 1.111192271 1.130906972 1.170650917 1.177416325 350560419 pgk Thioalkalivibrio thiocyanoxidans ARh 4 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio;species:Thioalkalivibrio thiocyanoxidans; 1.088968778 1.066568754 1.108875099 1.079424081 1.060132804 1.095685301 1.049806269 1.028786872 1.052271062 1.067791275 1.070648319 1.069294402 1.068632795 1.02777355 1.062756105 1.051243951 1.089870604 1.070179551 282570621 amyA Subdoligranulum variabile DSM 15176 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Subdoligranulum;species:Subdoligranulum variabile; 0.815532091 0.810191773 0.834908355 0.774691764 255924363 amyA Actinosynnema mirum DSM 43827 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinosynnemataceae;genus:Actinosynnema;species:Actinosynnema mirum; 0.997624573 1.064326386 0.937276804 0.94817443 0.989655412 1.047258263 0.973699231 0.944437915 0.950590042 1.046155282 0.939087111 0.953356488 1.015215393 0.955714453 0.975012196 0.960356153 0.95017319 1.012801536 308747784 ppx Enterobacter cloacae SCF1 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter lignolyticus; 0.838711716 0.813530708 0.828519742 0.826257502 115256008 phn Rhizobium leguminosarum bv. viciae 3841 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 1.226203916 1.208447508 1.198866532 1.197093669 1.18989539 1.229522445 1.173962038 1.203665614 1.181261644 1.197267404 1.188964299 1.198121375 1.175197575 1.175034418 1.107748464 1.169610055 1.21535461 1.205247377 113889821 endochitinase Shewanella sp. MR-7 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella; 1.146336163 1.133713976 1.177082164 1.13471689 1.103555048 1.134759218 1.099118513 1.119475618 1.104999997 1.101294028 1.104776381 1.092159047 1.107619751 1.102570669 1.09707974 1.143563068 1.146007026 1.103460721 256362074 hyaluronidase Catenulispora acidiphila DSM 44928 Carbon Cycling Carbon degradation hyaluronic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 0.778212862 0.886782831 0.849892098 0.865258034 0.799231623 0.772695602 0.875078382 0.833768645 0.833728564 0.777798363 0.841843267 167668104 ccmL Anaerotruncus colihominis DSM 17241 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Anaerotruncus;species:Anaerotruncus colihominis; 1.04757499 1.037394837 1.019815648 1.012929131 0.994594755 1.023738551 1.015829581 1.000417036 1.007611015 1.037173392 1.000111947 1.023051248 0.989337927 0.992690346 1.006043627 1.004880267 0.999879381 1.014755672 407068325 arylest Vibrio cyclitrophicus ZF14 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio cyclitrophicus; 0.795349265 0.807711267 0.839880899 0.791510292 0.861103524 0.81536302 0.783963121 0.849654371 0.841088493 0.817847258 0.807314263 0.826471975 0.808125726 0.833848195 0.818934046 387815237 alkj Marinobacter hydrocarbonoclasticus ATCC 49840 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter hydrocarbonoclasticus; 0.895757157 0.921818575 0.961554417 0.902949285 0.881542865 0.895441292 0.820697651 0.830956762 0.834585724 0.894345734 0.802718953 0.917673783 0.889566885 0.840568038 0.914137882 0.882658693 0.871220901 162146115 tktA Gluconacetobacter diazotrophicus PAl 5 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter diazotrophicus; 0.939143979 0.952911993 0.98054918 0.976624234 0.956058796 1.026885686 0.95621058 0.965099542 0.980858807 0.97693365 1.001679132 0.970686761 0.953634285 0.979448521 0.952212593 0.967673509 0.960602258 0.948566134 386378538 chitinase Serratia plymuthica PRI-2C Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia plymuthica; 0.999597939 1.017369993 1.004345905 0.987397573 1.021875078 1.045476295 1.055648278 1.014397378 0.96912386 1.081791022 1.002716918 0.987898447 0.981280222 1.062405182 1.03467443 0.997466646 0.973786186 1.014386277 119377291 ppx Paracoccus denitrificans PD1222 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 1.021418676 1.036317831 0.92830098 1.015417058 0.963662991 1.001164269 0.941695872 0.981584672 1.017228754 1.004945755 0.934588543 0.968806219 0.965965785 0.962837951 0.922509601 0.968498883 1.005612554 1.049802607 78093582 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.796362987 0.87958793 0.811480068 0.793475587 0.805774282 338756728 ppk Roseobacter litoralis Och 149 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter litoralis; 0.885016285 0.897551429 0.817603164 0.88203631 0.85011735 0.823772066 0.862032493 0.879821273 0.853025334 0.854250344 0.821157273 0.883575679 0.814966649 0.839814336 178469188 amyA Streptomyces griseus subsp. griseus NBRC 13350 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseus; 1.206240194 1.2223571 1.177318701 1.179324761 1.179819161 1.230592474 1.179584269 1.181181701 1.166709529 1.190714571 1.226045763 1.19827 1.19161594 1.200595591 1.167507181 1.183061532 1.203297737 1.18673643 385677024 poba Amycolatopsis sp. ATCC 39116 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis; 1.069954944 1.082834049 1.016090732 1.07143394 1.056368327 1.073808987 1.026445622 1.011205308 1.019318677 1.048940121 1.036974587 1.067649171 1.030291632 1.033770183 1.014611117 1.060947923 1.066218758 1.050560739 294675571 xyla Rhodobacter capsulatus SB 1003 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter capsulatus; 0.842807725 0.848046028 0.834886848 0.889214084 0.810410372 0.852420297 94471337 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.070756645 1.087968355 1.051987557 1.06883267 1.048947454 1.089961898 1.050484006 1.057693284 1.071240794 1.083922642 1.06311474 1.074464452 1.022849612 1.052206365 1.030592864 1.027198658 1.061607064 1.081315775 89084678 terc Bacillus sp. NRRL B-14911 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 0.787436868 0.80541802 0.842626855 0.819330402 0.84347014 0.80322409 384100588 xylj Rhodococcus imtechensis RKJ300 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus imtechensis; 1.117626047 1.108288993 1.113926072 1.123964146 1.096313693 1.097870148 1.084085325 1.105777158 1.103060057 1.076474015 1.093325952 1.12322551 1.097966516 1.050743836 1.039628162 1.082882933 1.123456785 1.064991779 345043917 amyA Prevotella sp. C561 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella; 0.761964959 0.812957643 0.780528035 0.812576629 284390216 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.8795613 0.952463823 0.931571614 0.979421177 0.949192401 0.921579448 0.939358402 0.951072767 0.911861177 0.910499791 0.915393849 0.930272869 0.881049873 0.817536809 0.857666954 0.835537108 0.934232404 0.890968227 182382478 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.049925703 1.011125063 1.083801981 1.066685337 1.058785762 1.108268422 1.052843847 1.075090573 1.050830086 1.056416648 1.028716669 0.990682907 1.078874675 1.023911208 0.999669538 1.01354193 1.1031072 1.072591151 109290265 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.815174713 0.831277425 0.787699854 0.817130032 0.811966195 0.854640426 0.809424776 0.842885756 260650932 pme Streptomyces scabiei 87.22 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces scabiei; 1.056329732 0.973693499 0.997777393 1.046405855 0.999693902 1.014678242 1.000914668 0.98596796 1.0436142 0.992340793 0.999114617 0.991181481 0.978218122 0.938318478 0.879396672 0.956729591 1.027098014 0.977382188 83840945 soxY Sulfitobacter sp. NAS-14.1 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 0.85268057 0.847613869 0.890093163 0.885784919 0.823186196 0.871482447 0.931827592 0.854973697 0.815103509 0.848680878 0.862346335 0.845947025 284165922 amyA Haloterrigena turkmenica DSM 5511 Carbon Cycling Carbon degradation Starch superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloterrigena;species:Haloterrigena turkmenica; 0.869283579 0.914788244 0.846240796 0.877256556 0.855690713 0.841031426 0.896018672 0.839976583 0.801175929 0.859065074 0.834806537 0.846505415 0.84540498 148547362 amie Pseudomonas putida F1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 1.334556394 1.339312571 1.297424762 1.313367498 1.28538305 1.339682054 1.264853569 1.28895431 1.27851649 1.295391713 1.303926923 1.303065878 1.25247725 1.274529843 1.262670012 1.277530144 1.298763379 1.284843149 296179727 cutinase Segniliparus rotundus DSM 44985 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Segniliparaceae;genus:Segniliparus;species:Segniliparus rotundus; 1.222886859 1.212870516 1.1587151 1.169110819 1.195071693 1.219762538 1.188059829 1.197000032 1.175965173 1.170392904 1.178075638 1.169452152 1.171951802 1.127230908 1.114100843 1.111624827 1.171337379 1.172992301 53757033 arsc Methylococcus capsulatus str. Bath Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylococcus;species:Methylococcus capsulatus; 0.872131706 0.855314066 0.860828992 0.865069048 0.845922954 0.866727527 0.851135841 0.837466548 0.873935686 0.861379518 0.866844224 0.893202032 0.881693764 0.875630352 0.852975976 0.887738238 0.878661657 0.865386556 56609518 pel_Cdeg Aspergillus niger Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 1.474158139 1.391815303 1.399094568 1.423005738 1.372863567 1.414719739 1.242015124 1.353056194 1.406823948 1.44899577 1.415785762 1.419602821 1.367792672 1.407428843 1.340356213 1.381139767 1.43249289 1.406678206 254384877 ppx Streptomyces sp. Mg1 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 1.00577268 1.037592531 1.018261486 0.991808015 0.976716213 1.021656571 0.967239556 1.006054024 0.991818875 1.009424835 0.989731499 0.991268422 0.916392498 1.014186481 0.937775274 0.991577881 1.009957616 1.007659257 139478535 mer uncultured soil bacterium Metal Homeostasis Mercury Detoxification superkingdom:Bacteria; 1.001029821 0.949905687 0.957126516 0.971279761 0.970596956 0.955419058 1.021982639 0.969698568 0.964916913 0.965697201 0.983424841 0.97675293 0.957398298 0.924733194 0.865726357 0.938611861 0.909624271 0.958944268 139478507 mer uncultured soil bacterium Metal Homeostasis Mercury Detoxification superkingdom:Bacteria; 0.914021042 0.912206377 0.909668831 0.9061843 0.925365192 0.941364793 0.908809594 0.867211907 0.918671515 0.889217485 0.843846238 0.882991692 0.852810464 0.881504579 0.865934669 0.887322917 0.914894238 0.936546684 358456363 cutinase Frankia sp. CN3 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 1.144617036 1.111784189 1.128254429 1.101035803 1.143185296 1.159927505 1.130964975 1.120839775 1.078903168 1.156455803 1.148034149 1.135910283 1.119746112 1.129124651 1.172448133 1.135663731 1.100478323 1.11416309 182416080 pme Opitutus terrae PB90-1 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 1.416249056 1.404540249 1.375355056 1.382929876 1.373836151 1.432228306 1.378692413 1.396114039 1.370562612 1.363921571 1.377354751 1.374569408 1.361537198 1.364977737 1.376904109 1.383170121 1.416221374 1.376124512 92112457 proO Chromohalobacter salexigens DSM 3043 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Chromohalobacter;species:Chromohalobacter salexigens; 0.961964272 0.950288823 0.912734807 1.009656825 0.912433103 0.952872159 0.897096462 0.935711402 0.915941388 0.931108846 0.91970722 0.993487462 0.891118731 0.899991447 0.889107312 0.915687424 0.960714836 0.95975138 28542601 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.952546961 0.943382075 0.939344771 0.963059676 0.94320511 0.922120712 0.938774884 0.939526151 0.951058539 0.895644675 0.934652279 0.932395569 0.879172966 0.847073196 0.859027977 0.900082832 0.902225343 0.909297701 71848870 rubisco Dechloromonas aromatica RCB Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Dechloromonas;species:Dechloromonas aromatica; 1.234911201 1.17304167 1.204279379 1.254463203 1.265080586 1.224539066 1.237082021 1.260312418 1.223836251 1.220999218 1.233134993 1.241914912 1.205859376 1.169731031 1.214629323 1.196257864 1.201682541 1.161381639 78166891 sqr Chlorobium luteolum DSM 273 Sulfur Sulfide Oxidation NA superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Pelodictyon;species:Pelodictyon luteolum; 1.072805825 1.050037838 1.006269959 1.040850507 0.975185677 1.00332765 0.966258689 0.967996157 1.031469192 1.00576208 0.985246309 0.990226604 0.98598205 0.981658537 0.919571936 0.98196312 1.027338647 1.015400763 88812482 tktA Nitrococcus mobilis Nb-231 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Nitrococcus;species:Nitrococcus mobilis; 0.887229109 0.925824245 0.853961399 0.892569212 0.887876658 0.92328723 0.858169624 0.879523365 0.90705801 0.865410068 0.859907197 0.865505297 0.848939325 0.895833951 0.842846017 0.901738876 0.913673191 257479579 ara Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Alicyclobacillus;species:Alicyclobacillus acidocaldarius; 0.973060052 0.928159582 0.869323935 0.950940319 0.887735412 0.925691825 0.882254772 0.902145122 0.923662678 0.943451096 0.895472557 0.944364059 0.905359616 0.872162826 0.845274581 0.870270403 0.956973528 0.96177904 196221599 rgl Chthoniobacter flavus Ellin428 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Verrucomicrobia;class:Spartobacteria;genus:Chthoniobacter;species:Chthoniobacter flavus; 0.992123242 0.932932273 0.930907321 0.991171043 0.939180448 0.96922946 0.862957382 0.95788879 0.983150722 0.916926323 0.882806706 0.912042138 0.909838298 0.899740583 0.843235612 0.881824045 1.014707561 0.952707765 152144700 narg Beggiatoa sp. SS Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Thiotrichaceae;genus:Beggiatoa; 0.841037727 1.136485861 0.871657622 0.862150342 0.868729922 0.903076749 0.824878707 0.84337426 0.825392152 0.891387531 0.861876089 0.814536006 0.943804073 0.876033882 0.79732294 0.806987073 0.852146259 0.933658638 124488145 napa uncultured bacterium Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria; 1.072839384 1.064775347 1.085376473 1.055737939 1.001573526 1.046386658 1.011987589 1.008235679 1.041846824 1.025001352 1.040131315 1.047318571 1.036425955 1.022134541 1.055078738 1.032236238 1.080236428 1.067559726 158109431 alkb Frankia sp. EAN1pec Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 1.34715792 1.313337174 1.303408238 1.32250022 1.262991822 1.326012288 1.271469425 1.301747657 1.308035517 1.296604774 1.294101095 1.328695954 1.262512938 1.266009313 1.262392031 1.281811166 1.333611626 1.300370655 170516854 alkb uncultured bacterium Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria; 0.834460121 0.825110759 0.850204718 0.8334389 0.824182693 0.861964153 0.819110769 0.810657704 0.849828641 0.850038881 0.813658205 170690598 vana Burkholderia graminis C4D1M Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia graminis; 0.806723041 0.897381892 0.947563031 0.786967759 0.881909433 0.868356994 0.87171406 0.818776464 0.835911004 0.813288802 0.867095544 0.812123327 0.957980081 47115400 rubisco Oligotropha carboxidovorans Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Oligotropha; 0.993075995 0.886774336 0.844991578 0.961694837 0.878626712 0.879600566 0.867306969 0.904134732 0.887001853 0.880275845 0.895977296 0.871503644 0.890312156 0.906149008 66801929 narg unidentified bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.838756824 0.838787768 0.865917382 0.819281887 0.878229124 0.846328046 0.898836518 0.87771289 0.887320785 0.837571541 0.882271265 0.826142192 0.87650048 0.854800812 342316466 aoxb uncultured bacterium Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 1.048615819 0.988812671 0.965667844 1.004991736 0.960203045 0.998852618 0.957780256 1.002023251 0.982032919 0.992360227 0.958731251 1.015119308 0.957623521 0.942101833 0.930402248 0.970520282 1.001842052 0.992971986 28542625 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.945695616 0.982094305 0.910452836 0.976892828 0.954653008 0.969802151 0.8773946 0.960543402 0.962376341 0.963624986 0.902547881 0.969796428 0.865149693 0.935722545 0.913897399 0.925704372 0.968768645 0.993392581 157679004 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.965474385 0.929213081 0.938711054 0.931774946 0.918956189 0.939353923 0.901524899 0.916474711 0.947177603 0.976777529 0.965813766 0.955005763 0.944847695 0.961028203 0.890688631 0.888680485 0.944707826 0.943992841 349792249 FBP_aldolase Thiorhodospira sibirica ATCC 700588 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thiorhodospira;species:Thiorhodospira sibirica; 0.838764093 0.926830911 0.821020356 0.88300494 0.842794134 0.860177587 0.862707874 0.856235686 0.804269959 0.826333989 0.888951671 0.869610449 212702496 atza Desulfovibrio piger ATCC 29098 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio piger; 0.924959875 0.911882313 0.907773973 0.912780765 0.893542797 0.918123431 0.905549406 0.886315776 0.932008156 0.888387222 0.917877546 0.89344721 0.825851379 0.860079045 0.814303164 0.854638489 0.934270142 0.911397532 338738732 tktA Hyphomicrobium sp. MC1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium; 0.84138932 0.87663853 0.814036843 0.86624468 0.795734979 0.802996469 0.830904189 0.868317021 0.833629505 0.892732643 56809407 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.937705513 0.969583648 0.891850069 0.86014906 0.951221003 0.847017037 0.89904094 0.858331807 0.947731747 0.891479426 0.930979795 0.888387383 0.897608188 0.87094972 0.89239929 0.881279577 0.929926422 356479154 ppx Mycobacterium thermoresistibile ATCC 19527 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium thermoresistibile; 1.044033724 1.065564335 0.990781448 1.031231798 0.997425151 1.022805254 0.968494891 0.992434671 0.986491462 1.020517036 0.985451856 0.991458866 1.015695409 0.978901997 0.996981136 1.004922743 1.019410097 1.050032303 333989773 bphc Mycobacterium sp. JDM601 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 1.160619749 1.143840466 1.119121657 1.127635025 1.103436028 1.168808683 1.078792208 1.089240631 1.077131691 1.104313896 1.095701399 1.117061493 1.084206096 1.125909947 1.064105996 1.110524103 1.137292036 1.155503728 83575162 ccmL Rhodospirillum rubrum ATCC 11170 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum rubrum; 1.113592227 1.111036712 1.1109939 1.086492693 1.025153906 1.073878993 1.043766282 1.066796202 1.086610775 1.08409095 1.083345091 1.10993653 1.043972615 1.075867777 1.030781968 1.046036859 1.116539294 1.114575586 256728218 endopolygalacturonase_fungi Nectria haematococca mpVI 77-13-4 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Fusarium;species:Nectria haematococca; 0.829991045 0.835855822 0.778562496 296131056 amyA Cellulomonas flavigena DSM 20109 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas;species:Cellulomonas flavigena; 0.886022764 0.963876399 0.916807564 0.930073062 0.944028893 0.996820594 0.95693108 0.959476262 0.885069849 0.995630794 0.941819789 0.957714358 0.927976889 0.968406195 0.916040708 0.956199734 0.919503448 0.971987775 284017322 ara Haloterrigena turkmenica DSM 5511 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloterrigena;species:Haloterrigena turkmenica; 0.829199814 0.87501906 0.876394074 0.855473588 0.851004126 0.864229653 0.821593333 0.852680445 0.803692857 0.816473695 0.815507713 0.799843539 0.806809861 0.806799208 0.85618538 0.86098651 73538849 pcag Ralstonia eutropha JMP134 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 0.815241973 0.835099291 0.837749573 0.842297708 0.787040755 0.811830429 0.843173795 0.821984913 0.846461295 0.809478006 0.855308635 0.878709715 218240655 ara Alicyclobacillus acidocaldarius LAA1 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Alicyclobacillus;species:Alicyclobacillus acidocaldarius; 1.348630432 1.342972816 1.306117611 1.345877289 1.324893141 1.333912878 1.325324303 1.324995837 1.323461808 1.332388948 1.305943359 1.320158784 1.305074217 1.279645378 1.254796673 1.294289491 1.338060149 1.314681626 91976532 PRI Rhodopseudomonas palustris BisB5 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 1.334211509 1.319702258 1.307677471 1.354091298 1.297267671 1.315269246 1.326703804 1.340265697 1.331561372 1.311897298 1.31532019 1.340621322 1.259491181 1.286278015 1.258431866 1.295092958 1.290999609 1.295085194 86284646 mer Rhizobium etli CFN 42 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 0.814335767 0.806215409 74038380 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.891484986 0.820109594 0.869549968 0.90029216 0.907768767 0.821652269 0.877754594 0.917562941 0.87691062 0.871532872 0.88261456 0.874233944 0.802520134 0.844720415 0.791682776 0.885365704 302868089 pme Micromonospora aurantiaca ATCC 27029 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Micromonospora;species:Micromonospora aurantiaca; 1.174125677 1.126426093 1.120547616 1.159876453 1.111436352 1.090393744 1.082718124 1.107065175 1.130542995 1.09488296 1.078691265 1.124539557 1.087606087 1.046522606 1.059988355 1.045669045 1.127959763 1.089707147 148254715 nfsa_2 Bradyrhizobium sp. BTAi1 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 1.268533598 1.221611869 1.231646137 1.251343706 1.227972658 1.253406631 1.235052706 1.243111544 1.225961635 1.234692793 1.228336009 1.254572351 1.216082759 1.190364434 1.204973846 1.233628051 1.256632714 1.232059232 253689679 trze Pectobacterium carotovorum subsp. carotovorum PC1 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium carotovorum; 1.219583147 1.17936263 1.174563198 1.203074041 1.168241184 1.200756347 1.153402944 1.171981581 1.1769987 1.191320607 1.18604591 1.170672742 1.167280051 1.156357916 1.131035725 1.180365112 1.218909272 1.165372339 46850276 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.103643361 1.088112596 1.022656199 1.09353259 1.002509599 1.041575075 1.021632847 1.02760003 1.071913606 1.017776089 1.030449374 1.049662189 1.029280205 1.009301815 1.011195224 1.03526601 1.07564679 1.027891705 210158475 fthfs Collinsella stercoris DSM 13279 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Collinsella;species:Collinsella stercoris; 1.118777269 1.031822334 0.974423366 0.972478107 1.012418703 1.017421242 0.974130946 0.960295589 0.96935203 0.99666907 1.002566938 0.970316909 0.974820676 1.004400024 0.928289488 0.969900508 0.980988067 1.035231705 261380404 cysI Neisseria subflava NJ9703 Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria subflava; 0.88683744 0.876778304 0.841242252 0.884124063 0.875662436 0.814312416 0.825027704 0.885049573 0.839797217 0.866702193 0.863475342 0.870947078 0.815996501 0.865269422 0.891288958 66801827 narg unidentified bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.081786527 1.075124686 1.049738837 1.075387828 1.038996576 1.07375741 1.043302858 1.045119424 1.074462938 1.046338962 1.047379141 1.060736262 1.04755952 1.035872239 1.04046653 1.036873306 1.069327689 1.084227122 111147441 vana Frankia alni ACN14a Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia;species:Frankia alni; 0.854759295 0.891876923 0.908558218 0.908056047 0.915653867 0.89203598 0.915480559 0.898707287 0.901593598 0.857952284 0.807682324 0.891620181 0.834983206 0.852129872 0.79548704 0.903989067 0.90793768 114707735 amie Fulvimarina pelagi HTCC2506 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Fulvimarina;species:Fulvimarina pelagi; 0.968382914 1.05913643 1.062956472 1.007063119 1.001948105 1.029842907 1.037826598 1.031714915 1.02661799 0.990975456 1.082926645 1.000539255 1.02181703 1.075951615 0.958779251 1.005002694 1.03059683 1.109784519 83026006 alkb uncultured bacterium Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria; 0.954995205 0.984092114 0.904969346 0.951777747 0.923640828 0.900407856 0.874493226 0.926588647 0.960963188 0.926910953 0.886143317 0.944894022 0.9396975 0.897818055 0.883262597 0.91084509 0.948264244 0.977891489 302409758 exopolygalacturonase_fungi Verticillium albo-atrum VaMs.102 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticilium;species:Verticillium albo-atrum; 0.926013238 0.921152027 0.979818674 0.939271306 0.946937981 0.94325429 0.9748028 0.975406652 0.926529917 0.901276078 0.977014927 0.931928754 0.83953479 0.875440386 0.869523055 0.819976936 0.946478963 0.946187884 328938649 ara Paenibacillus sp. HGF5 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 1.061614985 1.061232876 1.013014148 1.07399123 1.014053564 1.075344336 1.014505335 1.029481521 1.07545969 1.03488611 1.029165934 1.024508141 1.01652321 1.038426321 0.953374619 1.021965118 1.08597934 1.044833846 270334301 rgl Prevotella bergensis DSM 17361 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella bergensis; 1.094770928 1.084670078 1.100732271 1.09943514 1.044481671 1.101905735 1.085002397 1.129821976 1.093335634 1.119784135 1.048615123 1.097508915 0.993717173 1.047313021 0.969865869 1.02616766 1.044118361 1.093594286 37622237 one_ring_23diox Mycobacterium sp. MCS Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 1.200272222 1.188324343 1.216241982 1.207933135 1.256012928 1.262492362 1.258321891 1.238647546 1.223698023 1.253150739 1.232586985 1.25460951 1.195009563 1.157074899 1.163955586 1.214118568 1.25457309 1.234079481 310791274 lactase_fungi Glomerella graminicola M1.001 Carbon Cycling Carbon degradation Lactose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Glomerellaceae;genus:Glomerella;species:Glomerella graminicola; 0.755154751 0.808662453 0.780619748 0.795864679 0.809999315 0.816522698 359248892 mer Mesorhizobium alhagi CCNWXJ12-2 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium alhagi; 0.778244077 0.784461042 0.787804016 0.81431316 269218847 nitro Actinomyces sp. oral taxon 848 str. F0332 Organic Remediation Others NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 848; 0.968057926 0.956418079 0.899579681 0.956729533 0.861940697 0.92164346 0.903358031 0.924044616 0.94401833 0.931731634 0.837560231 0.920788981 0.817200919 0.838521884 0.858256156 0.871870561 0.934138234 28273025 ligninase Phlebia radiata Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Corticiales;family:Corticiaceae;genus:Phlebia; 0.848281989 0.884174332 0.869722259 0.927118559 0.913072158 0.863062536 0.891237207 0.879706875 0.903456053 0.816458365 0.836679678 0.833579253 0.916539803 0.887669146 91807168 nosz uncultured alpha proteobacterium Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 1.081877717 1.128023829 1.053659067 1.060904167 1.062702661 1.038863109 1.032016484 1.026966369 1.009241296 1.015575401 1.03492773 1.056901296 1.033902408 1.028718025 0.988977687 1.03095661 1.178793637 1.043666715 309306658 phospholipase_B_fungi Puccinia graminis f. sp. tritici CRL 75-36-700-3 virulence degradation NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;order:Pucciniales;family:Pucciniaceae;genus:Puccinia;species:Puccinia graminis; 0.889833097 0.85903207 0.811323013 0.830479299 0.817669664 0.863305472 0.820588682 0.864776418 0.859893868 0.906769364 0.790358484 0.840243391 0.792451398 0.850116526 0.819967781 0.809309008 0.830412308 76577544 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.884034544 0.882150573 0.856801179 0.88056667 0.865569677 0.895103797 0.866819287 0.831683022 0.862732766 0.926324209 0.861059627 0.872928146 0.834424468 0.874050574 0.831201446 0.896903588 1.100197237 0.890700401 71848368 soxY Dechloromonas aromatica RCB Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Dechloromonas;species:Dechloromonas aromatica; 0.992231722 0.989869483 0.957271511 0.976463315 0.963992696 0.946773877 0.954239485 0.96173424 0.934189723 0.955071745 0.976546166 0.976154593 0.942460939 0.918171454 0.896896428 0.911031168 0.969648583 1.017438909 166408352 one_ring_23diox uncultured bacterium Organic Remediation Aromatics Other aromatics superkingdom:Bacteria; 1.048499344 1.055868738 1.03725495 1.075092185 1.031089427 1.031832211 1.021461241 1.06879123 1.074048917 1.038557209 1.057473813 1.080209931 1.010947293 1.015454501 0.976462994 0.992196632 1.035506804 1.085305417 291544214 pectinase (pectate_lyase) Ruminococcus sp. 18P13 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus;species:Ruminococcus champanellensis; 1.013530563 1.015058921 0.99956234 0.997382496 0.957462266 1.012066528 0.936800304 0.943551225 0.975417269 1.039285459 1.012582141 0.944616139 0.955988213 0.989631463 0.90147072 0.9712307 0.981933479 0.967975026 149209867 phospholipase_C_fungi Magnaporthe oryzae 70-15 Carbon Cycling Carbon degradation Phospholipids superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 0.894127564 0.962732564 0.884314067 0.947878211 0.878631719 0.924057774 0.909261296 0.905838496 0.907354086 0.901616827 0.884639999 0.92041101 0.850399964 0.884598418 0.843877929 0.93940821 0.913674574 422313913 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.839961112 0.805974798 0.806904782 0.847696014 0.86212001 333442777 fccab Methyloversatilis universalis FAM5 Sulfur Sulfide Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Methyloversatilis;species:Methyloversatilis universalis; 1.062058622 1.009566533 0.992759706 1.023662595 1.011201467 1.023490585 0.985561293 0.973677722 1.040352665 0.932551765 0.919770518 0.980532967 0.946825086 0.947629664 0.876905536 0.939172942 1.029914237 1.051695052 383333706 linb Mycobacterium xenopi RIVM700367 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium xenopi; 1.378695628 1.369661313 1.353130715 1.340608604 1.362564961 1.426044117 1.350818331 1.358374255 1.334878958 1.347183621 1.364784088 1.327889264 1.346543073 1.336382063 1.312072347 1.33548528 1.372721086 1.352205766 214043339 PRI Roseobacter sp. GAI101 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 0.883520827 0.891464776 0.873365645 0.857565913 0.867803962 0.821267395 0.899144406 0.812536814 0.824362284 0.845506951 0.827280917 0.80214885 0.879433579 0.888367698 260771357 amyA Vibrio furnissii CIP 102972 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio furnissii; 0.862940918 0.845053714 0.837495719 0.831574004 0.861345756 0.830096908 0.849808124 0.886575809 0.845911357 0.813227387 0.853870952 0.842315188 0.854115339 0.838251272 0.83772933 0.840722301 0.839136271 21648074 frdA_rTCA Chlorobium tepidum TLS Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobaculum;species:Chlorobaculum tepidum; 0.963327102 0.980445954 0.929794923 0.985985396 1.013506945 0.956749682 0.949035886 1.010055622 0.984413809 0.943765196 0.894100737 0.919525225 0.889830288 0.89439801 0.841416892 0.94232684 0.927511803 0.970271458 387936805 xyla Cellvibrio sp. BR Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio; 1.069576231 1.026877438 0.996276776 1.073907955 0.999528184 1.019059002 0.995041569 1.028285469 1.047388991 0.987019666 0.986460667 0.999608918 1.029058206 0.979666407 0.987291074 0.973277918 1.048415371 1.040962283 378815966 merb Nocardia brasiliensis ATCC 700358 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia brasiliensis; 1.124578605 1.075260986 1.201741319 1.215199927 1.165951971 1.183692887 1.146319058 1.143845429 1.137798377 1.088739103 1.146259628 1.166236457 1.134552361 1.089180853 1.059177075 1.096547959 1.162061532 1.088162139 373280201 assa uncultured prokaryote Organic Remediation Other Hydrocarbons NA 1.273960244 1.3124911 1.253895686 1.297658955 1.277690387 1.320768459 1.274215025 1.240469115 1.246835731 1.297931379 1.254440818 1.258489141 1.269951847 1.27329595 1.242159619 1.266966219 1.271827173 1.270970806 383464050 xyla Saccharomonospora xinjiangensis XJ-54 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora xinjiangensis; 1.065537887 1.01034724 0.991948473 1.043191695 1.001810854 0.993942616 1.010155358 1.005241264 1.034408823 1.015797309 0.998141446 1.022075878 0.966746651 0.957299807 0.90802426 0.973057651 0.997454172 1.022334287 112441755 mcra uncultured methanogenic archaeon Carbon Cycling Methane Methanogenesis superkingdom:Archaea;phylum:Euryarchaeota; 1.015444676 0.9984953 1.083206607 1.036033611 1.02889489 1.011539617 0.995155391 1.055741303 1.047453687 0.997881197 1.083679375 1.026137762 0.994587672 0.997976149 0.954194273 0.97034997 1.011344642 1.024860711 332672129 xylanase Cellulomonas fimi ATCC 484 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas;species:Cellulomonas fimi; 1.149262875 1.153343407 1.15117166 1.134043683 1.140974564 1.143395545 1.126618055 1.118146919 1.114275488 1.142601068 1.130049731 1.147672949 1.127805305 1.099756536 1.110206736 1.136506878 1.145922783 1.13531039 356659249 bphd Rhodococcus opacus PD630 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus opacus; 0.950633337 0.955490134 0.959684394 1.008077788 0.980604173 1.007763653 0.978721302 1.008478004 1.003130686 0.959393826 0.97737487 0.969435131 0.939561177 0.90993923 0.868980107 0.888896801 0.994872473 0.929143778 67008218 cmua Rhodobacteraceae bacterium 179 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 0.850858631 0.865261603 0.861660568 0.868114055 0.83507697 0.825061169 0.797980086 0.848502013 0.871667923 0.872453807 0.831781998 0.857337428 0.787491109 0.813932854 0.853105538 0.863864709 76666604 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.812713527 0.813360582 0.846219578 0.79789349 0.828202663 0.829542687 0.815695979 0.799184416 0.83668679 0.822235967 0.837466074 226090969 ppk Gemmatimonas aurantiaca T-27 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Gemmatimonadetes;class:Gemmatimonadetes;order:Gemmatimonadales;family:Gemmatimonadaceae;genus:Gemmatimonas;species:Gemmatimonas aurantiaca; 1.215863557 1.220543117 1.19989252 1.153342799 1.150609367 1.215717862 1.138734721 1.14516581 1.131775418 1.145836949 1.115523671 1.178004082 1.144947973 1.1849706 1.174247034 1.19943646 1.214690298 1.234767414 269923114 B_lactamase_A Brevundimonas subvibrioides ATCC 15264 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Brevundimonas;species:Brevundimonas subvibrioides; 1.154293448 1.149662636 1.125985867 1.162213443 1.118418499 1.165588819 1.12770819 1.146344662 1.139777074 1.128905814 1.11200052 1.151734966 1.09436772 1.080583412 1.026269953 1.098141448 1.15231508 1.131207128 374104822 mdlb Streptomyces hygroscopicus subsp. jinggangensis 5008 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces hygroscopicus; 1.141928256 1.139056147 1.116611174 1.14407649 1.114275042 1.146016856 1.107317441 1.144956563 1.128097017 1.132738808 1.120581529 1.137118112 1.111964279 1.129915166 1.085697317 1.111834096 1.135564895 1.109405161 154362228 fthfs uncultured microorganism Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway 0.919407111 0.919443004 0.90558093 0.902483463 0.856901967 0.829539192 0.861411099 0.888985468 0.890641947 0.888749275 0.831958809 0.894022819 0.876912587 0.851796655 0.804545606 0.809166772 0.898060554 0.889642263 224602465 urec Lutiella nitroferrum 2002 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Lutiella;species:Lutiella nitroferrum; 1.321019264 1.283116836 1.293859109 1.316257219 1.255171931 1.292886492 1.239143845 1.274839848 1.299246368 1.271579248 1.258317125 1.282435609 1.232292339 1.251123797 1.227030618 1.265271732 1.299070691 1.295482018 85713564 cysJ Nitrobacter sp. Nb-311A Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter; 1.282129448 1.28749908 1.258753038 1.312910562 1.226565265 1.25108819 1.054395533 1.262842666 1.248726192 1.25218904 1.312059418 1.251445437 1.234308307 1.192968335 1.252259396 1.23087459 1.273104592 260221955 pgk Curvibacter putative symbiont of Hydra magnipapillata Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Curvibacter; 0.93130298 0.921310229 0.918749658 0.956731526 0.874977746 0.96487593 0.891229399 0.937401281 0.925428478 0.942976376 0.933239961 0.927431193 0.912406892 0.91232727 0.888468063 0.958640557 0.923411414 0.913799171 124266779 GAPDH_Calvin Methylibium petroleiphilum PM1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 1.092364087 1.111907474 1.034543768 1.078544965 0.994170344 1.081528401 0.967396396 1.004883901 1.067172086 1.047705825 1.030746805 1.049058781 0.959794489 1.037704999 1.044917658 1.007071343 1.080708467 1.081871836 74318668 CsoS2 Thiobacillus denitrificans ATCC 25259 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus;species:Thiobacillus denitrificans; 1.143937112 1.137567781 1.132966874 1.166339733 1.144088925 1.150316872 1.135655414 1.134579824 1.124189364 1.0962198 1.11591686 1.138717977 1.115231856 1.104594881 1.151578161 1.11330972 1.118115215 1.094519263 342797751 cysJ Vibrio scophthalmi LMG 19158 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio scophthalmi; 1.137630813 1.141105301 1.13462551 1.136388747 1.11300331 1.100243906 1.180068961 1.132950937 1.131834005 1.112998747 1.115356317 1.125487883 1.094473943 1.030991913 1.063902108 1.08611167 1.13499003 1.088840552 198262255 mer gamma proteobacterium HTCC5015 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 1.192540703 1.144617127 1.143974364 1.212559754 1.144997525 1.171517661 1.161099203 1.172522316 1.182080243 1.162865625 1.150236788 1.184255714 1.131174511 1.134869276 1.096326885 1.142060914 1.203669616 1.156390624 261857044 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.963417722 0.929015315 0.978314625 0.980357279 1.005593445 0.971765459 0.943404436 0.944541901 0.961213631 0.991079897 1.00727664 0.93877069 0.897321751 0.932356382 0.996703253 0.939249471 0.902982683 333448788 nifh Nostoc sp. LCRNK_11 Nitrogen Nitrogen fixation NA superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc; 0.763541144 0.815728514 300390249 fthfs uncultured bacterium Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria; 0.821890805 0.814834474 0.876326345 0.854684733 0.823587464 0.832231958 0.830272035 0.837214915 0.816052407 0.833792747 0.857064259 0.839043543 0.793831664 0.879138719 0.825604073 242211440 glucoamylase Postia placenta Mad-698-R Carbon Cycling Carbon degradation Starch superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Postia;species:Postia placenta; 1.078768929 1.091201372 1.092160909 1.117516888 1.086737602 1.099814247 1.045827613 1.063749133 1.100877511 1.027862516 1.049190155 1.074235153 1.031068106 1.018322855 1.053128649 1.056266968 1.106556738 1.090171116 124110761 mult_ring_12DiOx Sphingobium yanoikuyae Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium; 0.838023782 0.807185097 0.857963586 0.840188842 0.875951179 0.83723267 0.877968335 0.848712694 0.860398362 0.850878145 0.841862884 0.887235913 0.813390349 0.838561994 0.826742298 0.858081533 0.900672385 120405367 bphd Mycobacterium vanbaalenii PYR-1 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 0.974843805 0.89876214 0.936407105 0.95576034 0.967150335 0.945244832 0.916226272 0.873561456 0.974546779 0.904331957 1.022280432 0.990715432 0.912591062 0.915662239 0.910481643 0.8908485 0.964518137 0.945295269 389877953 phn Tistrella mobilis KA081020-065 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Tistrella;species:Tistrella mobilis; 1.408603852 1.297478192 1.421016853 1.411084291 1.388882948 1.449955751 1.410920423 1.418301237 1.401273397 1.425131573 1.400593937 1.43768583 1.395994444 1.399654038 1.430602033 1.420511993 1.415716479 1.352533591 41058919 chne Brachymonas petroleovorans Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Brachymonas; 1.276886112 1.255845107 1.264976112 1.242063839 1.276622186 1.30739125 1.231941695 1.239183562 1.228973703 1.241663112 1.247653803 1.292069215 1.225549427 1.200276084 1.206611921 1.225324568 1.275156163 1.259843165 295797449 fccab Thiomonas intermedia K12 Sulfur Sulfide Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Thiomonas;species:Thiomonas intermedia; 0.889327547 0.867269063 0.872140757 0.877792197 0.857583974 0.852407403 0.85255221 0.875807979 0.893520064 0.820129247 0.850074876 0.888398257 0.832347258 0.849394081 0.897465095 242799103 p450aro Talaromyces stipitatus ATCC 10500 Organic Remediation Aromatics polycyclic aromatics superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 0.883322438 0.879939159 0.891182143 0.89779433 0.873938957 0.885095545 0.838724157 0.871068866 0.906915111 0.900000937 0.864588261 0.837714609 0.86016973 0.868701421 0.824007741 0.897333507 0.921531272 0.887454287 326207636 ppx Novosphingobium nitrogenifigens DSM 19370 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium nitrogenifigens; 1.138477263 1.174409632 1.104019287 1.171796203 1.092918407 1.144737352 1.10132216 1.104114183 1.063947277 1.144990168 1.099295418 1.117967619 1.109599085 1.14209397 1.086957115 1.108451324 1.147310814 1.135844902 388433520 B_lactamase_A Rhodanobacter fulvus Jip2 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Rhodanobacter;species:Rhodanobacter fulvus; 0.919743063 0.974907296 0.882344943 0.972734013 0.927175578 0.952236516 0.854250396 0.9259076 0.921883752 0.948125849 0.86787994 0.904282203 0.914760597 0.921766114 0.921834259 0.95617515 0.988456738 56785436 phenol_oxidase Trametes sp. AH28-2 Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Trametes; 0.968359203 0.97360276 0.896114277 0.980181737 0.935915093 0.98897139 0.904774109 0.958984739 0.938351485 0.963889194 0.930213289 0.956571737 0.9265047 0.932594569 0.891980377 0.918228375 0.987576659 0.994209714 385867054 alkb uncultured bacterium Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria; 0.760404848 0.810191749 87281133 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.896161506 0.861814416 0.861150352 0.844143586 0.821174397 0.861979654 0.897026721 0.864702256 0.854795861 0.861819754 0.869746335 0.851993962 0.83373976 0.888409576 0.825778265 3157724 nifh unidentified nitrogen-fixing bacteria Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.836601104 0.822223012 0.834881289 0.823738295 0.873813868 0.883897128 555995 xylg Pseudomonas putida Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 1.042780103 1.004178204 1.030736984 1.020030345 0.963288225 0.955246991 0.954180001 1.00563618 1.035778221 1.014670234 1.005954655 1.03008932 1.029143456 0.97772436 0.964694643 0.937107154 1.017484261 0.999941575 283818855 alginase Spirosoma linguale DSM 74 Carbon Cycling Carbon degradation Alginate superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Spirosoma;species:Spirosoma linguale; 0.842080452 0.869435698 0.847052412 0.825934512 0.831573543 0.835622362 0.840441075 0.84534457 0.845773824 0.828257965 0.85462496 0.826787455 209884321 SoxC Oligotropha carboxidovorans OM5 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Oligotropha;species:Oligotropha carboxidovorans; 1.26980304 1.204217219 1.230663305 1.232847421 1.181010497 1.189477172 1.159111849 1.183207635 1.201769316 1.20606358 1.206828693 1.205269389 1.201871695 1.1558002 1.170192613 1.193663737 1.238296128 1.207864347 323472959 rubisco uncultured bacterium Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria; 0.929350799 0.957553026 0.942271194 0.884443399 0.928637536 0.95464628 0.873346699 0.896105823 0.912815141 0.892930241 0.917176407 0.899768715 0.89948489 0.868338348 0.843596176 0.944102896 0.950002315 0.935419555 239933535 ara Streptomyces ghanaensis ATCC 14672 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces ghanaensis; 1.034798477 0.984348117 0.99173257 1.006744291 0.963942634 0.980028697 0.96968248 0.937046717 0.968069677 0.980000926 0.982819131 0.989591022 0.947435073 0.979626907 0.974733333 0.981072757 0.988040139 0.974892039 330819973 nhh Burkholderia gladioli BSR3 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia gladioli; 1.007887465 1.006831098 0.957818635 1.020920139 0.988524414 1.030950127 0.965542474 0.961021011 1.017805373 0.974104431 0.98626285 0.984206507 0.971110783 0.965871787 0.943007389 0.951244869 1.020050835 0.998341984 167523389 hsp90_Choanoflagellida Monosiga brevicollis MX1 Other Phylogenetic NA superkingdom:Eukaryota;order:Choanoflagellida;family:Codonosigidae;genus:Monosiga;species:Monosiga brevicollis; 1.158446206 1.145889638 1.122737972 1.175841822 1.102055618 1.119306962 1.089284379 1.126862919 1.12306877 1.097710268 1.100996322 1.11762792 1.09558282 1.083103143 1.085171362 1.092203806 1.165440175 1.098009525 219965742 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.869340841 0.854412926 0.870345151 152989181 catechol Pseudomonas aeruginosa PA7 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 0.935548842 0.954565987 0.947864859 0.945536066 0.934471997 0.908961597 0.93793762 0.905844937 0.919246927 0.970553629 0.910686454 0.861853553 0.912176406 0.871901092 0.852793302 0.922251201 0.965227762 309307455 glx Puccinia graminis f. sp. tritici CRL 75-36-700-3 Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;order:Pucciniales;family:Pucciniaceae;genus:Puccinia;species:Puccinia graminis; 1.047234937 0.929879853 0.965838978 0.964547464 0.940583851 0.989432301 0.932639315 0.956251071 0.976853353 0.963664597 0.996884706 0.984691046 0.930887558 0.969681583 0.956093651 0.955458155 0.966923788 0.942578729 192362528 amyA Cellvibrio japonicus Ueda107 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio;species:Cellvibrio japonicus; 1.058523247 1.050780304 1.030162917 1.063273446 1.026701803 0.985268224 0.980461759 1.042144235 1.05550804 1.022609834 0.999130184 1.057558995 1.032879294 0.980282056 0.960634998 0.976361415 1.040046253 1.027431406 89473928 nifh uncultured cyanobacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria;phylum:Cyanobacteria; 0.985620745 0.993174063 0.96769366 1.0218811 1.026105706 1.17290759 1.005468031 1.033621936 0.965070402 1.00599357 0.949232242 1.030239087 0.960076294 0.976678754 1.002196495 0.949296913 1.007885542 1.011469561 358239267 cysJ Gordonia amarae NBRC 15530 Sulfur Reduction NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia amarae; 1.237243569 1.260449907 1.240077144 1.223662099 1.23215894 1.289092265 1.206230486 1.211093713 1.230835281 1.206419194 1.209139484 1.185762845 1.20851289 1.205050947 1.185822213 1.226568922 1.257712883 1.254365255 377520260 cutinase Gordonia otitidis NBRC 100426 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia otitidis; 1.306381148 1.276126927 1.251051632 1.317752718 1.269832874 1.313239222 1.26989564 1.306145383 1.28904049 1.264350879 1.25350379 1.302705646 1.255014505 1.248527925 1.25975326 1.280620229 1.288154344 1.272781342 339457776 amyA Streptococcus mitis SK1080 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus mitis; 0.839515599 1.073730543 149783645 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.930974277 0.93772935 0.917670102 0.933471142 0.904951848 0.900200715 0.898969126 0.834839673 0.91909589 0.885375548 0.849999778 0.911118912 0.846020165 0.860985164 0.842742946 0.854283362 0.979688549 0.928473581 148837588 tktA Vibrio shilonii AK1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio shilonii; 0.827485424 0.820976373 0.95862269 0.840237867 0.86077541 0.892566026 0.828546688 0.808427331 0.883716891 0.878602397 0.877825316 0.814535732 163855935 TIM Bordetella petrii DSM 12804 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella petrii; 0.8204141 0.853438227 0.841323631 0.949948305 0.852821541 0.878888811 0.888182386 0.948673293 0.907179737 0.822877266 0.93000276 0.864835427 0.843383906 0.960479992 0.891854701 0.885789148 223587962 aromatic_peroxygenase Coprinellus radians Organic Remediation Aromatics Other superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinellus; 0.90625933 0.809986699 0.80135905 0.996364229 0.923509901 0.924440542 0.794681776 0.827263401 0.910950775 0.87998266 0.889252724 0.791128106 0.80734842 380766215 mcra uncultured archaeon Carbon Cycling Methane Methanogenesis superkingdom:Archaea; 0.870204522 0.82163061 0.892606888 0.866092248 0.900200305 0.843115428 0.864560632 0.823907457 0.90706473 0.846642132 0.816797422 0.866468999 0.857898301 0.868518665 74422788 one_ring_12diox Pseudomonas fluorescens Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.9136599 0.938903974 0.824346137 0.916892261 0.884597471 0.900394227 0.85196392 0.891596408 0.923623378 0.89303434 0.823791857 0.89760594 0.872098982 0.818993463 0.887912747 0.892066543 0.913415904 0.935215764 160917392 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.891154563 0.926813233 0.917767298 0.919757337 0.90357436 0.986558886 0.924369515 0.908575684 0.899485682 0.961300203 0.867359744 0.912655438 0.870447676 0.923522712 0.847673598 0.877553795 0.896325726 0.968826504 353194004 chitinase Paenibacillus lactis 154 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus lactis; 0.778926668 0.786470302 145609041 cutinase Magnaporthe oryzae 70-15 Carbon Cycling Carbon degradation Cutin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 1.170743938 1.190450356 1.122801766 1.150224326 1.107473193 1.12594662 1.108319463 1.147032185 1.11932349 1.124173908 1.116170833 1.154483831 1.090295248 1.086265522 1.073017896 1.10748221 1.182060952 1.117979795 94471203 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.010387782 0.983551463 0.979695204 0.977571814 0.996325631 0.998551543 0.997428958 0.991991465 0.997843224 1.010889412 0.981852752 1.020402636 0.971748187 0.964182521 0.931942543 0.964314678 0.960139536 0.994725045 383703658 amyA Rheinheimera nanhaiensis E407-8 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Rheinheimera;species:Rheinheimera nanhaiensis; 0.799682305 0.854407543 0.835157806 0.890659492 0.832692303 0.816369055 0.864411297 0.834604434 0.832672747 0.833564656 0.804324281 0.849272267 0.834337561 0.788440257 0.861369666 298270032 acetylglucosaminidase Bacteroides sp. D22 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides; 0.774939787 0.810896822 0.744048916 0.781879175 0.823145582 0.817232383 158138865 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.254646132 1.186505197 1.222731992 1.229200971 1.201091324 1.239084269 1.194371767 1.228294848 1.227310172 1.196521897 1.186157772 1.220631405 1.210682556 1.205940488 1.194903732 1.226047865 1.243225406 1.195040789 365539162 PRK Vibrio ordalii ATCC 33509 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio ordalii; 0.8732925 0.824844759 0.887080225 0.838480415 0.863575055 0.83473962 0.852084058 0.813557583 0.85298139 0.845153706 0.833625965 0.852295425 0.806464013 89045879 atzd Oceanicola granulosus HTCC2516 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola granulosus; 1.312690368 1.270414958 1.247657506 1.295661698 1.258800862 1.264483741 1.249298958 1.268714393 1.273328915 1.229801234 1.25129529 1.28989075 1.222339254 1.201474995 1.248898002 1.23385818 1.262847228 1.20263798 88865152 amyA Jannaschia sp. CCS1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Jannaschia; 0.882311475 0.950390881 0.912801042 0.913737601 0.875015938 0.857274649 0.834995243 0.828202874 0.879572392 0.901299344 0.818524746 0.845172258 0.849234096 0.860676223 0.847485181 0.858084359 0.892005535 26278770 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.245110409 1.21294636 1.197585197 1.23653916 1.175341988 1.220564568 1.17802168 1.19315462 1.221034737 1.205220682 1.186468387 1.209118745 1.179382667 1.18322385 1.150531523 1.190019573 1.244301798 1.201297827 219807959 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.773011579 0.811575706 0.824330398 0.850252772 0.818090769 0.803063371 0.804970053 0.838236921 326635601 phytase Pseudomonas sp. 206 Phosphorus Phytic acid hydrolysis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.788976296 0.826581598 0.775361513 0.826467561 269791037 amyA Thermobaculum terrenum ATCC BAA-798 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;genus:Thermobaculum;species:Thermobaculum terrenum; 0.906378037 0.934847831 0.872134942 0.883418873 0.858630327 0.91674172 0.867086771 0.903651491 0.924225562 0.928932786 0.887040553 0.914963321 0.860928034 0.88208598 0.85058527 0.913967054 0.95035747 301108071 pectin_lyase_Oomycetes Phytophthora infestans T30-4 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;order:Peronosporales;genus:Phytophthora;species:Phytophthora infestans; 1.01669699 1.063800674 1.056169963 1.08366329 1.084997699 1.071014327 1.080942264 1.080809603 1.105190676 1.046834208 1.075639808 1.079313193 1.038755489 1.040530117 0.996813412 1.019460939 1.057140102 1.117688274 148982399 chitinase Vibrionales bacterium SWAT-3 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales; 1.034897634 0.972123714 1.06663739 0.991083786 1.011884397 0.966322204 0.979981941 0.987991147 1.013866646 0.98651169 0.990172825 0.97856703 0.959570685 0.899037101 0.892880215 0.923155558 0.997729794 0.982240171 149190072 endochitinase Vibrio shilonii AK1 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio shilonii; 0.802447648 0.810047883 0.790852141 0.804875485 0.796145504 0.804982587 0.796851355 0.797374907 0.799062546 0.821661279 21217709 rubisco uncultured bacterium Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria; 0.80112019 0.84554308 0.826452427 0.810461047 0.867886112 0.84966374 0.848557805 0.839987774 0.835449646 0.863500365 0.850949696 0.84113781 0.819645394 0.799769479 0.804971121 0.818528744 0.871407178 282950650 urec Citrobacter rodentium ICC168 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter rodentium; 1.074493229 1.078287754 1.089266065 1.090918061 1.100244431 1.12272811 1.085146143 1.074110665 1.087743023 1.078442639 1.121201846 1.133251223 1.093500503 1.021260886 1.042519119 1.09877049 1.09236981 1.049900554 381198826 bphd Sphingobium yanoikuyae XLDN2-5 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium;species:Sphingobium yanoikuyae; 0.778347583 0.82017834 376168466 cda Lactobacillus gastricus PS3 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus gastricus; 0.812989728 0.779280632 0.869757252 0.854914039 0.85357881 0.838164316 0.851312866 0.853197921 0.853276808 0.808815273 0.843271872 0.851468697 299142573 amyA Prevotella oris C735 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella oris; 0.902025088 0.888482258 0.876594321 0.837949939 0.832556034 0.884401983 0.870542742 0.867564871 0.850652724 0.897337719 0.932770053 313156812 acetylglucosaminidase Alistipes sp. HGB5 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Rikenellaceae;genus:Alistipes; 0.927177084 0.954210652 0.908303564 0.880401053 0.87601503 0.877473031 0.853279469 0.898458194 0.944114378 0.894681797 0.853155521 0.905090874 0.849297401 0.831814416 0.838847995 0.833382611 0.890781501 0.951057444 124009012 amyA Microscilla marina ATCC 23134 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Microscilla;species:Microscilla marina; 1.148294612 1.118377782 1.086958936 1.140508609 1.104444205 1.126921832 1.097178825 1.080754758 1.183132365 1.114588898 1.12781637 1.132319163 1.040797791 1.072937667 1.028901565 1.101478185 1.091098931 1.103870081 391880288 amyA Parascardovia denticolens IPLA 20019 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Parascardovia;species:Parascardovia denticolens; 0.926951467 0.907796856 0.936189266 0.92213963 0.876447871 0.93283026 0.876965409 0.888381677 0.907682807 0.884680196 0.873495869 0.854482538 0.836000901 0.878276356 0.843818948 0.875808399 0.965444439 0.901336946 289209396 dehh109 Thioalkalivibrio sp. K90mix Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio; 0.931517279 0.946381422 0.8948445 0.930086802 0.898308873 0.940355761 0.859191181 0.865623793 0.902929715 0.814003922 0.917397379 0.852806308 0.867974974 0.848735556 0.858027408 0.92563403 0.943759263 171742625 mannanase Bifidobacterium dentium ATCC 27678 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium dentium; 0.908210042 0.881870959 0.837224319 0.889430706 0.854814859 0.889342925 0.822726074 0.850476693 0.863204077 0.834149271 0.870419855 0.861488697 0.868111482 0.844152169 0.851034197 0.89431576 0.882632222 254450778 GAPDH_Calvin Octadecabacter antarcticus 238 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter arcticus; 0.823643848 0.881679312 0.832052119 0.894147463 0.927540892 0.798068408 0.861402344 0.811960613 0.797434273 0.869991243 0.83817368 0.819340414 0.847931436 0.813105863 0.931230538 0.834063901 0.882515458 149210941 exopolygalacturonase_fungi Magnaporthe oryzae 70-15 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 0.887167193 0.913931252 0.955410573 0.886834211 0.893255601 0.897526482 0.861882233 0.88231585 0.898841241 0.909259657 0.879674347 0.855503133 0.858959493 0.873992284 0.841342565 0.864400076 0.935811782 0.919809867 315182573 GAPDH_Calvin Vibrio furnissii NCTC 11218 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio furnissii; 0.88690372 0.85365888 0.830954714 0.844561237 0.845477547 0.881273439 0.876377718 296393547 amyA Segniliparus rotundus DSM 44985 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Segniliparaceae;genus:Segniliparus;species:Segniliparus rotundus; 0.917035534 0.915053885 0.875647419 0.950693243 0.941456615 0.946100837 0.968429283 0.908058367 0.899229095 0.980668294 0.909063851 0.969747124 0.909324934 0.920994887 0.849404737 0.900766641 0.902608064 0.954495393 169793418 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.031201199 0.993813477 0.991059739 1.002323661 0.975407325 0.990618837 0.940832218 0.907906274 0.978864039 0.909196031 0.919392333 0.966596973 0.920276347 0.930162483 0.921634735 0.912773596 1.023532673 0.992738407 394986668 nosz Bacillus sp. ET Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 0.850038871 1.018453235 0.839871008 0.858252327 0.845017266 0.845153661 0.861773088 0.85301171 0.873915671 0.852305812 0.876253428 0.830911215 0.872121342 333992503 amyA Mycobacterium sp. JDM601 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 0.846683967 0.822223083 0.839576438 0.841895397 0.844774177 0.817832104 0.859420114 0.824673996 333396904 badh Lactobacillus coryniformis subsp. coryniformis KCTC 3167 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus coryniformis; 0.86796645 0.884588996 0.837442687 0.816705191 295440819 tktA Burkholderia sp. CCGE1002 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 0.958376534 0.993290043 0.919688723 0.918341501 0.870255752 0.954931033 0.863607431 0.936109083 0.919708439 0.941379945 0.858309071 0.898383389 0.842391561 0.886728192 0.859328081 0.919707286 0.936731024 1.000788167 255300641 mdh Campylobacter showae RM3277 Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter showae; 1.468896173 1.440583306 1.459925787 1.45793212 1.401507587 1.432087978 1.400577363 1.457873331 1.454079854 1.444728563 1.412810903 1.464922987 1.392077046 1.387790466 1.397431319 1.427108977 1.44338904 1.435516387 146343609 soxY Bradyrhizobium sp. ORS278 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 1.190000882 1.172178169 1.147362139 1.206364121 1.135192024 1.161003666 1.13309423 1.155939207 1.173908775 1.153055383 1.132551928 1.143200318 1.075756165 1.107530366 1.089740415 1.110551854 1.187882939 1.174703961 164456130 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 0.990818868 1.019694181 0.931217619 0.951638211 0.950641626 1.018155437 0.954445394 0.924149904 0.931765071 0.97661217 0.999026298 0.961937378 0.954116218 0.993914717 0.932645884 0.963722699 1.00233263 0.986452515 116235163 nosz Brachymonas denitrificans Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Brachymonas; 1.004554127 1.008003876 1.012066239 0.99449829 0.992312473 1.015289067 0.970418089 0.988102481 0.967299261 0.939730725 0.91294806 1.016953411 0.957313477 0.91843179 0.900180074 0.921085253 0.996561538 1.009135652 337264791 mer Mesorhizobium opportunistum WSM2075 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium opportunistum; 1.004680868 0.984964877 1.028125215 1.053636986 1.057061028 0.992594668 1.016656158 1.0129465 1.018688914 1.0060167 1.024492023 1.011960554 0.962302809 0.984568025 1.032153627 0.982744512 1.028290635 1.027926091 1841362 tdnb Pseudomonas putida Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 1.051033772 1.042599206 1.030555881 1.04382547 1.000790337 1.027371543 1.016001928 0.996702578 1.059606833 1.017049236 1.029572179 1.014113367 1.032021174 1.007074297 1.000343293 1.02572511 1.041866652 1.046570649 88643249 dsrB Desulfosalina propionicus Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfosalina; 0.765730928 0.804621899 0.810993785 0.79043757 0.798613308 0.773503091 0.822297584 0.834501891 118588878 FBPase Stappia aggregata IAM 12614 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 1.141725274 1.087968242 1.101553179 1.11650424 1.102248322 1.11251476 1.103863347 1.141389499 1.136951528 1.087596486 1.092815988 1.090418335 1.085568806 1.062013361 1.073000437 1.080226381 1.133554801 1.086522607 329937483 acetylglucosaminidase Streptomyces griseoaurantiacus M045 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseoaurantiacus; 1.077758202 1.076040815 1.056964406 1.042793145 1.075157204 1.073101397 1.06196902 1.051349481 1.034184284 1.030880475 1.067015962 1.045732043 0.982035263 0.977130513 0.938051932 1.022238599 1.027585951 1.053776728 149176727 ccmL Planctomyces maris DSM 8797 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Planctomyces;species:Planctomyces maris; 0.793526031 0.800705589 0.802087884 0.808399044 0.839408482 0.825933091 0.84122484 0.817073184 0.80202013 0.814827183 0.823770032 0.781044858 0.787345911 0.819279826 84796654 one_ring_12diox Arthrobacter sp. 3YC3 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 1.03810784 0.965569966 0.964038503 0.975406165 1.02399714 1.016676079 0.931915439 0.987557015 1.009677992 0.972794647 0.95157714 1.024574327 0.963234136 0.936241657 0.955785824 0.955541257 1.006473362 0.991871807 374845057 amyA Nocardia cyriacigeorgica GUH-2 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia cyriacigeorgica; 1.126057884 1.125269402 1.076827738 1.100732069 1.105420238 1.104328892 1.073865795 1.084736959 1.080754834 1.096304813 1.089314905 1.110271914 1.087759182 1.090723634 1.061546098 1.084242802 1.121329727 1.120571116 70991849 mannanase Aspergillus fumigatus Af293 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus fumigatus; 0.762748136 0.779427917 302879701 ppx Gallionella capsiferriformans ES-2 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Gallionellales;family:Gallionellaceae;genus:Gallionella;species:Gallionella capsiferriformans; 0.841796564 0.804436963 0.804424104 0.86666728 0.830529844 0.800206784 0.848575335 0.838036617 0.853778485 0.798508169 0.808014633 0.866562425 0.842180701 298541705 pgk Gloeobacter violaceus Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Cyanobacteria;class:Gloeobacteria;order:Gloeobacterales;genus:Gloeobacter; 0.89688033 0.910220508 0.832125042 0.864743153 0.860231904 0.894517655 0.812513096 0.853794687 0.916743579 0.873387451 0.858398553 0.883591107 0.903892837 0.85588234 0.835305081 0.900105396 85058228 arsc Sodalis glossinidius str. 'morsitans' Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Sodalis;species:Sodalis glossinidius; 0.891114548 0.974300876 0.839566079 0.881808666 0.940241002 0.899664381 0.873717496 0.859415716 0.874223696 0.918377066 0.892929861 0.855255245 0.908211631 0.898111528 0.864857573 0.892605933 0.902278973 58201588 pgk Nitrosovibrio sp. FJI82 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosovibrio; 0.823900098 0.819654748 0.840832377 0.789970585 0.864051963 0.819273311 254254044 endochitinase Burkholderia dolosa AUO158 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia dolosa; 0.859077317 0.877581572 0.858284967 0.867393724 0.919325005 0.897485981 0.929841715 0.842120731 0.862051429 0.933220323 0.981786987 0.879830714 0.908360431 0.913402411 0.817775994 0.895601627 0.861374578 0.883139959 334129588 TIM Methyloversatilis universalis FAM5 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Methyloversatilis;species:Methyloversatilis universalis; 1.430555024 1.396772318 1.417063963 1.402198159 1.419093988 1.43292588 1.407864336 1.40787117 1.387168353 1.39718179 1.415942184 1.391070289 1.378794782 1.351013885 1.362020373 1.381896456 1.4196535 1.382482102 325271563 nitrilase Pseudomonas sp. TJI-51 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.958564558 1.043437263 0.93990121 1.061755208 0.990149282 1.002754589 1.052810997 0.957791587 1.022408902 0.970227775 0.932242424 0.937912078 0.997369327 0.92323266 0.859037594 0.941279083 1.012608473 1.007723403 388532052 amyA Tistrella mobilis KA081020-065 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Tistrella;species:Tistrella mobilis; 0.795051753 0.789748443 0.796771118 0.837519047 0.811925001 0.790700776 385676002 xylj Amycolatopsis sp. ATCC 39116 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis; 0.88250322 0.903885468 0.893074841 0.939711678 0.893311625 0.896970659 0.936146813 0.889716395 0.911857089 0.905888016 0.905898404 0.932535457 0.839453524 0.863094599 0.856028638 0.894865874 0.876391308 0.837929908 351681890 cda Rhodanobacter sp. 2APBS1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Rhodanobacter; 1.042086973 1.059112993 1.013302574 0.981473185 0.944022392 0.989816206 0.988450432 1.001293083 1.028852416 1.036520104 1.012294901 0.96174226 0.944904702 1.015298174 0.933331193 0.981553196 1.01933764 1.069936095 226346798 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.155258229 1.17464132 1.088253409 1.121690697 1.088213621 1.153465862 1.084826484 1.08201718 1.10938296 1.100424218 1.076676268 1.099949272 1.071121404 1.089656329 1.052491847 1.089669478 1.14768935 1.16577542 239832814 tktA Ochrobactrum intermedium LMG 3301 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum intermedium; 0.943788341 0.983697269 1.033591985 0.942078607 0.920916789 0.933122645 0.927879484 0.931779057 0.935176384 0.966328467 0.913289536 0.961540348 0.898803021 0.872694005 0.910675115 0.904610276 0.97164081 0.953789816 184194753 FBP_aldolase Burkholderia phymatum STM815 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 0.80329698 0.862407792 0.876494873 0.952186333 0.824111363 0.860970733 0.843774958 0.836091041 0.86139332 0.818235282 0.799458122 0.845948799 0.851062594 294675331 cda Prevotella ruminicola 23 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella ruminicola; 0.787818785 0.803335869 0.761525012 0.805466003 365851035 xyla Lactobacillus parafarraginis F0439 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus parafarraginis; 0.856108692 0.873166582 0.883529986 0.903871755 0.872414777 0.873749588 0.859044947 0.870436168 0.829331814 0.884535264 0.771236555 0.829491983 0.817248047 0.903891926 0.905444088 229748947 ara Stackebrandtia nassauensis DSM 44728 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Glycomycetaceae;genus:Stackebrandtia;species:Stackebrandtia nassauensis; 1.074350725 1.080411073 1.081800361 1.097988217 1.0836886 1.08880854 1.089311717 1.111884079 1.103528397 1.063156842 1.08369337 1.112106543 1.076846332 1.013507111 1.046076223 1.063341949 1.092158769 1.049281933 90196508 alkb Mycobacterium vanbaalenii PYR-1 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 1.084598085 1.124804634 1.097352725 1.087248689 1.120348908 1.11076177 1.094488601 1.086813853 1.098127585 1.113815698 1.111066366 1.12246107 1.078632779 1.111329205 1.050517815 1.085818461 1.074821742 1.133800234 388530934 xylj Tistrella mobilis KA081020-065 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Tistrella;species:Tistrella mobilis; 1.035084313 1.076441333 1.037458072 1.024399074 1.017378388 1.063368135 0.998117519 1.01812448 1.024509808 1.030424865 1.037039475 1.061305787 0.987818553 1.04090315 1.004548701 1.036455455 1.027375734 1.062350594 357547430 badh Lactobacillus rhamnosus ATCC 21052 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus rhamnosus; 0.793344946 0.814435157 0.804982209 0.820632485 0.824015814 0.815418207 0.805119973 0.808523276 0.851882125 0.77229306 0.851051472 226279032 cpnb Paracoccidioides sp. 'lutzii' Pb01 Organic Remediation Other Hydrocarbons NA NA 0.857142208 0.848453051 393723093 B_lactamase_A Sphingomonas sp. PAMC 26605 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 0.992890137 0.96016824 0.86015213 1.016168808 0.852301056 0.943994013 0.852685791 0.921265324 0.943525747 0.913912414 0.882701667 0.94887919 0.829325038 0.88060673 0.894974101 0.966118522 0.908038727 312113608 xylanase Rhodomicrobium vannielii ATCC 17100 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Rhodomicrobium;species:Rhodomicrobium vannielii; 0.946259634 0.898757306 0.900443786 0.93214437 0.934514707 0.893665552 0.956130767 0.946232867 0.929820803 0.945425814 0.938236736 0.985467029 0.896068048 0.870710041 0.912253917 0.928587922 0.937733681 0.947007085 384086661 GAPDH_Calvin Acidithiobacillus thiooxidans ATCC 19377 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus thiooxidans; 1.312701717 1.22164114 1.228675141 1.24411105 1.258134687 1.283591018 1.243554988 1.248478089 1.219577153 1.248851671 1.222571105 1.222718155 1.201733964 1.189865211 1.153646343 1.239203672 1.23126624 1.225224006 398805245 B_lactamase_A Polaromonas sp. CF318 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 1.049081213 0.982003 1.053211414 1.003976334 0.992402302 0.967283125 1.003260257 1.034026659 1.014376288 0.965276018 0.99794918 1.034034203 0.974180458 0.889736953 0.956340955 0.94787154 1.015718516 1.004393623 112462559 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.83193861 0.877811981 0.935122856 0.844555219 0.803900399 0.844029439 0.868627735 0.860818176 0.817362077 0.803225629 0.84310676 0.955178333 0.807449975 337759161 endoglucanase Hyphomicrobium sp. MC1 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium; 1.151588274 1.125018728 1.086681394 1.110934329 1.101766254 1.119511734 1.09867175 1.083889007 1.088822862 1.094868615 1.087334359 1.104346181 1.096891746 1.087914026 1.051273559 1.104815843 1.116669327 1.102097423 365856440 ophc Acetobacteraceae bacterium AT-5844 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae; 1.028817164 1.022526155 1.018155091 1.028185827 0.978396568 1.027953105 0.998296093 1.033124256 1.008528148 1.007923336 0.999728026 1.018535772 0.982497844 1.026206491 0.968814215 1.038922511 1.023640258 1.046712765 114195474 tannase_Cdeg Aspergillus terreus NIH2624 Carbon Cycling Carbon degradation Tannins superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 1.076104389 1.07669716 1.075300109 1.147465469 1.066224392 1.100458339 1.063705765 1.123495652 1.127256573 1.091981334 1.046266102 1.121780452 1.084309561 1.047723007 1.091535496 1.057173796 1.115777469 1.090055354 222452549 arsc Halorubrum lacusprofundi ATCC 49239 Metal Homeostasis Arsenic Detoxification superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halorubrum;species:Halorubrum lacusprofundi; 0.912487621 0.876533615 0.894343668 0.886450581 0.896277101 0.941707523 0.843977135 0.846654392 0.927426594 0.87041814 0.803155692 0.829241844 0.82558255 0.904769824 0.833126101 0.936826945 0.923377463 229468987 amyA Exiguobacterium sp. AT1b Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium; 0.851950852 0.929229458 0.89565479 0.859615818 0.915181928 0.929667764 0.840947434 0.826232901 0.885452037 0.880524007 0.835073048 0.90266116 0.860195481 0.868436857 0.882099322 0.878218108 0.983809212 0.982114765 357976334 xylg Sphingomonas sp. KC8 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 1.158283215 1.139879646 1.117712332 1.136333139 1.050880173 1.160676962 1.067101699 1.088198061 1.146693008 1.100341318 1.127710922 1.102591745 1.072505153 1.07558952 1.071415176 1.082280591 1.150648535 1.130493959 116804622 nasa uncultured prokaryote Nitrogen Assimilatory N reduction NA 0.998167181 0.992592257 1.03215832 1.021063481 1.042651769 1.016423892 1.005994353 1.004116968 1.044847943 1.050564431 1.053425522 1.008268996 1.034261978 1.034279883 0.975694903 0.98585423 1.029958223 1.037178534 89274946 hcab Rhodococcus sp. R04 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 0.999698648 0.952894114 0.985433913 1.043841095 0.975488237 1.020914702 0.970969158 0.991388968 1.044288492 0.986081987 0.935677719 1.021266006 0.967786871 0.975411844 0.979861468 1.000770188 0.99000098 0.927000404 298387607 amyA Bacteroides sp. 1_1_14 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides; 0.983458783 1.00332699 0.981863841 1.020341008 1.039383088 1.008892161 1.013529973 1.019906695 1.013548821 1.010917103 0.973512315 1.00009554 0.976089679 0.952638174 0.955711174 0.952285799 0.989389178 0.986776473 363613524 atza Synergistes sp. 3_1_syn1 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Synergistetes;class:Synergistia;order:Synergistales;family:Synergistaceae;genus:Synergistes; 0.819676492 0.813144337 146282308 phytase Pseudomonas stutzeri A1501 Phosphorus Phytic acid hydrolysis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 1.321761348 1.330476119 1.308502566 1.308969324 1.304616676 1.325858467 1.286279987 1.326104583 1.309626898 1.291348664 1.299729928 1.310255688 1.288290199 1.26596984 1.293282028 1.283748142 1.315995744 1.316467586 38427044 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.167576636 1.202568672 1.145714065 1.135984391 1.153809909 1.193011787 1.109033112 1.130714533 1.104024384 1.152541251 1.139552788 1.144493506 1.134409355 1.136772468 1.123159622 1.153451364 1.163836038 1.16193148 78093566 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.769812988 0.794215202 0.810315453 0.806941341 0.832071586 0.812203063 0.80242946 0.835029156 0.821361536 0.854575984 398056849 one_ring_12diox Burkholderia sp. BT03 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 0.942816418 0.793926809 0.862965809 0.801166551 0.845916876 0.81861566 0.8246437 323366416 nifh uncultured microorganism Nitrogen Nitrogen fixation NA 0.943503391 0.963490979 0.927919565 0.940055305 0.94286341 0.939859078 0.911065122 0.940781722 0.922945976 0.939074505 0.938438037 0.959458145 0.89291092 0.930001375 0.913737323 0.877444857 0.954679153 0.980697005 343426787 glx Sporisorium reilianum SRZ2 Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Ustilaginomycetes;order:Ustilaginales;family:Ustilaginaceae;genus:Sporisorium;species:Sporisorium reilianum; 0.889642561 0.932474783 0.879326408 0.935773806 0.904735523 0.952093465 0.911550788 0.88886878 0.908359516 0.920949937 0.885341728 0.885204791 0.881988382 0.889072428 0.884743304 0.919966086 0.915147991 0.9355724 302407425 cellobiase Verticillium albo-atrum VaMs.102 Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticilium;species:Verticillium albo-atrum; 0.850895898 0.831640724 0.829193167 0.887402652 0.863273639 0.838504681 0.853010764 0.870540689 0.884662453 0.856454816 0.81399515 0.885992666 0.829041639 0.860482774 390523519 rd Desulfitobacterium dehalogenans ATCC 51507 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium dehalogenans; 1.14068628 1.155825353 1.143884273 1.220441437 1.156777518 1.132170004 1.149909828 1.163409133 1.141331658 1.160145847 1.138322905 1.167005218 1.146701587 1.110664561 1.137586578 1.144520974 1.149025607 1.141382918 90332973 urec marine gamma proteobacterium HTCC2207 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 0.792960774 0.856463185 22293726 urec Thermosynechococcus elongatus BP-1 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Thermosynechococcus;species:Thermosynechococcus elongatus; 1.301301455 1.239380722 1.275953316 1.30306336 1.27046736 1.272260873 1.284608215 1.271626184 1.297251513 1.215092719 1.231287149 1.277918495 1.239469606 1.190919189 1.229911818 1.236237482 1.288879601 1.18325409 322396316 tktA Methylocystis sp. ATCC 49242 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylocystaceae;genus:Methylocystis; 1.01133782 0.971949783 0.943966316 0.988569613 0.971038471 0.969793195 0.951758519 0.949218733 0.936157202 0.939304612 0.963435542 0.960511861 0.90953514 0.910884363 0.880439076 0.891082064 1.008024883 1.00218357 325299781 pme Bacteroides salanitronis DSM 18170 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides salanitronis; 0.840628211 0.790002305 0.834520237 0.862013368 0.891990389 0.815467063 0.851059565 0.824528477 0.889657725 0.827683495 254474379 soxY Ruegeria sp. R11 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 1.295131593 1.257289527 1.265081811 1.270690308 1.255932027 1.31155859 1.266340879 1.275568786 1.252038023 1.25982636 1.271662041 1.272647984 1.23961318 1.241113239 1.229926258 1.252045016 1.278312477 1.259133775 118693048 nitrilase Shewanella pealeana ATCC 700345 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella pealeana; 1.101603059 1.067432861 1.151946394 1.128421601 1.136178538 1.149327606 1.107979656 1.117648344 1.087176752 1.171599797 1.188555117 1.125830385 1.093036427 1.183203296 1.155645343 1.064464603 1.094108741 1.085379515 154509443 mer Actinomyces odontolyticus ATCC 17982 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces odontolyticus; 1.056781832 1.044205501 0.999430282 1.064447946 0.956737286 1.057544673 0.963764273 1.005636791 1.033270361 1.020666186 0.961753638 0.986499849 0.961590391 0.986827206 0.904919696 0.99587117 1.052456452 1.073253024 323366224 nifh uncultured microorganism Nitrogen Nitrogen fixation NA 0.977095104 0.954545558 0.954966303 1.014758719 0.951311066 0.982917806 0.956756215 0.961003916 0.962538316 0.958267435 0.968840477 0.966469347 0.926826545 0.934413486 0.913351204 0.92264034 0.988982452 0.927009925 77698229 nosz Rhodopseudomonas palustris BisA53 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 1.093766098 1.118042574 1.099405649 1.132306665 1.077651185 1.110389778 1.064903352 1.010096673 1.078417438 1.104112438 1.100474509 1.129436309 1.083833534 1.099495673 0.992975226 1.073163097 1.052607354 1.105655244 94983269 silicon_transporter NA Metal Homeostasis Silicon Transport 1.14650938 1.166772901 1.140798039 1.168069237 1.135556412 1.140362999 1.130227106 1.162241966 1.142034297 1.126129193 1.132706731 1.137990305 1.107980298 1.085857874 1.088985999 1.091109678 1.164106429 1.142273197 77378645 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.958775994 0.901915007 0.857178084 0.878476743 0.823262932 0.814165275 0.908822454 0.881085205 0.816565434 0.908048827 0.885280274 239981946 acetylglucosaminidase Streptomyces albus J1074 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces albus; 0.797657312 0.905629761 0.858385531 0.891702303 0.872209357 0.922008485 0.866408517 0.88969362 0.84590408 0.829257472 0.870967417 0.882510412 91791360 chnd Polaromonas sp. JS666 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 0.920592849 0.932473087 0.939926727 0.989849859 0.951045329 0.932705534 0.934481153 0.938692167 0.951834588 0.882586196 0.899735199 0.940066549 0.906984092 0.922290848 0.940710662 0.887961857 0.940472107 0.924039352 390947173 amyA Alistipes finegoldii DSM 17242 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Rikenellaceae;genus:Alistipes;species:Alistipes finegoldii; 1.183103451 1.169798751 1.12368285 1.150161567 1.120749793 1.196048393 1.134583904 1.134900991 1.157640598 1.137602955 1.148474971 1.14726217 1.131283116 1.128739527 1.124490162 1.139214318 1.167505807 1.127083652 91781192 bphF1 Burkholderia xenovorans LB400 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 1.320247291 1.288135798 1.278180257 1.312076397 1.276684005 1.328149078 1.296200287 1.304097832 1.297083782 1.251216436 1.281563835 1.290079025 1.25820276 1.246686732 1.283990272 1.288416541 1.322145925 1.240897812 189428222 ara Bifidobacterium longum DJO10A Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium longum; 1.497422002 1.422859949 1.407933447 1.419865001 1.393362486 1.483399254 1.385483131 1.410276812 1.403705857 1.423205043 1.388670771 1.38130743 1.370042319 1.410418288 1.37521801 1.405168173 1.449280584 1.435985255 78220240 arsc Desulfovibrio alaskensis G20 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio alaskensis; 1.100036395 1.092854467 1.108322586 1.131234283 1.086937642 1.076250379 1.080205929 1.082939672 1.088595148 1.111496613 1.107124322 1.154093761 1.057348814 1.077273188 1.045015289 1.06128883 1.077688673 1.083481587 299744125 protease_serine_fungi Coprinopsis cinerea okayama7#130 Carbon Cycling Carbon degradation protein superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 0.831423563 0.843229685 0.928903171 0.832640158 0.894630243 0.898447422 0.895132002 0.884672186 0.864842999 0.917054362 0.899482959 0.863262895 0.904863306 0.963489389 0.947812721 0.884814071 0.878152393 0.868837472 157679018 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.950361699 0.946582246 0.942092316 0.916073488 0.923380437 0.917999827 0.893742264 0.923078734 0.93864337 0.984772455 0.954154266 0.943714773 0.902132142 0.920545511 0.972806024 0.883516977 0.884753846 0.939126175 145218861 dsrB Prosthecochloris vibrioformis DSM 265 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeovibrioides; 0.918838713 0.885200767 1.025079545 0.904440366 0.883208732 0.874619357 0.92341486 0.882262594 0.917418799 0.873181966 0.830144357 0.950731147 0.906169467 0.873864864 0.844174159 217976317 PRI Methylocella silvestris BL2 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Methylocella;species:Methylocella silvestris; 0.999693488 1.055162225 0.918601633 1.006783092 1.019861717 1.073584339 1.008363723 0.91022342 0.972086109 1.06787482 1.020790396 1.028582043 1.01912686 1.071935069 1.041725884 1.022585313 1.009771835 1.04024884 398822158 ben_bcla Bradyrhizobium sp. YR681 virulence NA NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.941167403 0.885249615 0.941774918 0.908433706 0.88835137 0.93851017 0.863241257 0.8528573 0.933537495 0.9395836 0.946611955 0.943323097 0.881972447 0.920672368 0.887417314 0.931446875 0.980549806 0.895010204 46911936 PRK Photobacterium profundum SS9 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium profundum; 0.767727923 0.804868336 0.825335478 0.835750529 256831609 ara Jonesia denitrificans DSM 20603 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Jonesiaceae;genus:Jonesia;species:Jonesia denitrificans; 0.995421166 0.997059956 0.908976216 1.01511067 0.978025281 0.963915277 0.941730689 0.953484968 0.987646536 0.961749635 0.951185903 0.998700809 0.923692893 0.935096223 0.914044442 0.978478325 0.965205962 0.988694839 297561884 ara Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Nocardiopsis;species:Nocardiopsis dassonvillei; 1.293401257 1.298134624 1.269237775 1.279016808 1.274998215 1.313528606 1.259335416 1.277347511 1.251861633 1.272447447 1.272834725 1.266733169 1.256198875 1.26817772 1.284073817 1.268432447 1.302645053 1.28076815 374853336 fthfs uncultured candidate division OP1 bacterium Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria; 0.859000404 0.824645776 0.898387537 0.794773168 0.815540235 0.839720024 0.806051436 0.842571415 149811120 mer Roseobacter sp. AzwK-3b Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 1.021684128 0.973548301 0.99349442 1.007235994 0.944773113 0.996952172 0.937792934 0.993212845 1.010500864 1.001241551 0.9494206 0.999153131 0.92714376 0.958990979 0.89287418 0.939719911 1.048092113 0.994517832 334106380 rgl Isoptericola variabilis 225 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Promicromonosporaceae;genus:Isoptericola;species:Isoptericola variabilis; 1.122065234 1.129172501 1.118493767 1.09887764 1.115951887 1.141985666 1.104674705 1.090030291 1.09668513 1.129045792 1.102578236 1.096598425 1.103942028 1.064826224 1.073122711 1.095107252 1.119213594 1.123466135 14575565 poba Streptomyces coelicolor A3(2) Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 0.768099753 0.844135459 0.778576584 0.861753841 146190102 exaa(moxf) Bradyrhizobium sp. ORS278 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.911837949 0.89405605 0.915673633 0.944864243 0.905747286 0.904790527 0.943886274 0.951818123 0.89475079 0.890968625 0.879908983 0.927750547 0.877450311 0.806493983 0.84850383 0.850004469 0.892222978 0.893997196 361130345 nahf Glarea lozoyensis 74030 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Helotiaceae;genus:Glarea;species:Glarea lozoyensis; 0.948263612 0.886407912 0.93905436 0.976218959 0.901694734 0.919819552 0.909747418 0.94893088 0.974237293 0.941879697 0.957404278 0.912459549 0.920088329 0.931319094 0.916261878 0.889696255 0.951648843 0.920025205 159038731 chitinase Salinispora arenicola CNS-205 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora arenicola; 0.879715333 0.916972746 0.947649256 0.90684691 0.910364166 0.906098814 0.892878253 0.895688276 0.910198133 0.945731748 0.886186834 0.91918674 0.862066588 0.860126262 0.832654409 0.86109463 0.907366036 0.921841245 295689301 mer Caulobacter segnis ATCC 21756 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter segnis; 0.93915222 0.905471794 0.949349063 0.927559205 0.924306458 0.960354964 0.977428077 0.925587277 0.933649656 0.972745841 0.943363385 0.918020653 0.941582839 0.911608935 0.879445404 0.925218941 0.927254462 0.943251849 296128007 endoglucanase Cellulomonas flavigena DSM 20109 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas;species:Cellulomonas flavigena; 0.8689844 0.848291332 0.843146102 0.844625305 0.851476919 0.830592756 0.822629939 0.802480671 0.829938189 0.845011101 0.832782313 0.835074296 0.814374405 0.833585306 0.860270746 116613074 one_ring_23diox Arthrobacter sp. FB24 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 0.82780021 0.82951154 0.857392342 0.82746191 0.799465531 0.796907944 0.831267915 0.888660432 0.844453547 0.849773641 0.801541505 0.792683861 0.818851454 0.857118649 0.852587314 326382380 arsc Gordonia neofelifaecis NRRL B-59395 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia neofelifaecis; 1.280099688 1.277779294 1.267399109 1.259257708 1.222652184 1.296410524 1.2334014 1.264226062 1.24962951 1.240654845 1.233995025 1.234716766 1.1898601 1.239389163 1.187735582 1.236356179 1.256740732 1.270807751 29652508 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.927956515 0.892615617 0.958005156 0.971248246 0.949981882 0.945472313 0.934487587 0.96095516 0.937804141 0.928728321 0.919906505 0.948107413 0.919829473 0.854921071 0.890572461 0.873932898 0.965558411 0.932180107 190010931 ppk Stenotrophomonas maltophilia K279a Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 1.17167527 1.141391699 1.154529517 1.175235913 1.16079919 1.143662439 1.129794166 1.147916916 1.142548843 1.136914861 1.112165867 1.15821637 1.119670077 1.0886698 1.077756152 1.138787021 1.145210292 1.139717282 169793364 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.815448073 0.87077638 0.842334479 0.877035096 0.854991352 0.894377844 0.841470393 0.799281028 0.869527351 0.840922226 0.818907175 0.869339797 0.861366676 0.858731023 0.850476958 0.897709422 91681986 FBPase Rhodopseudomonas palustris BisB5 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 1.139924912 1.137706616 1.126168063 1.141925274 1.131072658 1.151730478 1.123197982 1.097610639 1.121086219 1.13908396 1.138025198 1.148183113 1.08987524 1.087425778 1.088858706 1.130895298 1.135939823 1.15293634 332107784 terc Rubrivivax benzoatilyticus JA2 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Rubrivivax;species:Rubrivivax benzoatilyticus; 0.894737074 0.800639811 0.92707139 0.879663682 0.925370899 0.916805261 0.86216431 0.871656888 0.933006466 0.889122322 0.896064047 0.901146923 0.875965387 0.844984786 0.88136847 0.937826089 0.890311256 0.951994135 97954686 nirk Ochrobactrum sp. R-26889 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum; 0.8892119 0.809777051 0.841550652 0.888552485 0.908005937 0.80979832 0.889082693 0.898042069 0.867097242 0.864241741 0.863573759 0.894927183 0.80530512 0.83026799 0.834666864 83316992 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.957490321 0.954246792 0.871511848 0.93446485 0.806262602 0.92403993 0.882204843 0.922548093 0.993815407 0.940779722 0.858883517 0.896150578 0.843612967 0.936678483 0.873457198 0.962428133 0.974161521 302554967 amyA Streptomyces viridochromogenes DSM 40736 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces viridochromogenes; 0.823010552 0.840949943 0.843940444 0.837431198 0.794400174 0.860752626 0.812614535 0.824963597 0.833065095 0.842680022 0.884788734 365273428 amyA Bradyrhizobium sp. ORS 285 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.86145602 0.901290058 0.835159252 0.856796773 0.845365391 0.87033463 0.856672645 0.90371288 0.858011354 0.837761132 0.855112752 0.835219133 0.847499257 0.876975337 0.841430203 0.934182405 0.896043158 126718419 hbh Roseobacter sp. SK209-2-6 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 0.818242607 0.821734726 0.861114151 0.797653457 196232607 urec Chthoniobacter flavus Ellin428 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Verrucomicrobia;class:Spartobacteria;genus:Chthoniobacter;species:Chthoniobacter flavus; 1.366734454 1.347545636 1.334232996 1.33385897 1.315362139 1.363597217 1.306727873 1.35351813 1.325998943 1.338825658 1.326958335 1.357467618 1.296092995 1.318860226 1.321917863 1.348300518 1.355935542 1.356076567 152975381 fthfs Bacillus cytotoxicus NVH 391-98 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cytotoxicus; 1.060434332 1.054588099 1.02263815 1.09257614 1.020226207 1.047188966 0.997435673 1.05592301 1.061173088 1.015548676 0.989438127 1.065217018 0.995528305 0.970851648 1.005577998 1.002898797 1.05598955 1.039378236 307726773 arsc Burkholderia sp. CCGE1003 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 0.778239112 0.806167847 0.811216748 0.86309742 26985956 soxY bacterium HY-86/2 Sulfur Sulfur Oxidation NA superkingdom:Bacteria; 1.10172947 1.085875066 1.052583006 1.102400451 1.00387518 1.05674686 1.019179295 1.075758286 1.082411475 1.059015845 1.056411005 1.083011741 0.991992822 1.000881019 0.960663852 1.018881273 1.141249757 1.070208599 293326097 chitinase Shewanella violacea DSS12 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella violacea; 0.876970743 0.904259622 0.847925058 0.957591408 0.887818244 0.860334288 0.900065124 0.905386347 0.900505723 0.880016526 0.859629921 0.933688771 0.876433281 0.864684048 0.87075081 0.876806536 0.922377463 0.90056058 371589225 pme Rahnella aquatilis CIP 78.65 = ATCC 33071 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Rahnella;species:Rahnella aquatilis; 1.079252394 1.027427528 1.058646094 1.060767546 1.062791679 1.051627965 1.047823151 1.032935375 1.054972484 1.02985708 1.03978552 1.051346581 0.968406451 0.976641492 0.95519261 0.999373613 1.048049617 1.064880735 307095234 sqr uncultured bacterium Sulfur Sulfide Oxidation NA superkingdom:Bacteria; 1.078803228 1.056286246 1.037302192 1.070486866 1.055407588 1.120055766 1.057518186 1.067368568 1.037241211 1.061101177 1.060227487 1.046528409 1.0353085 1.044143867 0.965098839 0.967172063 1.12207605 1.048848065 153887635 urec Ralstonia pickettii 12D Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 1.747803266 1.688656364 1.718888099 1.702911196 1.692818141 1.760833396 1.707879091 1.740758219 1.688578881 1.668952214 1.698752591 1.708738758 1.683674643 1.657049867 1.683960971 1.713369913 1.696972559 1.647729992 82791818 endochitinase Streptomyces davawensis Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 0.776558113 0.815383706 0.804977796 0.77616807 76577452 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.858254146 0.819985882 0.87307811 0.905616302 0.884220751 0.884203518 0.926307815 0.838284356 0.889088552 0.903711089 0.889738974 0.911918627 0.81918378 0.887909324 0.857906996 209401670 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.994866147 0.99918162 1.006443305 1.004112558 0.995764327 0.983494153 1.020644872 0.999543308 1.007650299 0.991701678 1.022700058 0.997391337 0.949191012 0.972820929 0.931026078 0.952999353 1.030787992 1.05779726 37924788 nifh uncultured nitrogen-fixing bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 1.246351052 1.170688656 1.164204244 1.177513784 1.170157541 1.188593665 1.171563221 1.206154517 1.184737292 1.198350474 1.179682131 1.197544094 1.139732978 1.156967607 1.133696631 1.15818512 1.171244233 1.152047522 61220987 catechol Ralstonia sp. SJ98 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 1.345640255 1.263673545 1.238811528 1.305058983 1.272602568 1.338404681 1.255155464 1.332269572 1.315011183 1.288549509 1.214689686 1.278789394 1.280823691 1.23311969 1.27441795 1.284218257 1.32186418 1.30264368 39934082 proO Rhodopseudomonas palustris CGA009 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 1.070863888 1.050642648 1.024844299 1.068355384 1.017101863 1.03766327 1.01409189 1.030666788 1.064833038 1.04663065 1.035195564 1.111301187 0.994548748 1.017810693 0.993296929 1.086393893 1.06952468 1.026881644 353243325 rgl Piriformospora indica DSM 11827 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Sebacinales;family:Sebacinaceae;genus:Piriformospora;species:Piriformospora indica; 1.098591433 1.048383282 1.027370327 1.052690989 1.000897288 1.06557267 1.020570443 1.024524815 1.022198596 1.019023243 1.024594563 1.015836444 0.980450328 0.984767432 1.002031825 1.059173259 1.062480479 1.021499679 222148431 terc Agrobacterium vitis S4 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium vitis; 1.388131562 1.330245776 1.343070371 1.355392104 1.33462818 1.364126107 1.307861421 1.34915478 1.335470464 1.340764808 1.354160783 1.357127877 1.321914451 1.330430507 1.320588923 1.337698949 1.345531657 1.330584839 60593148 dsra uncultured prokaryote Sulfur sulfite reduction NA 0.919562721 0.923256348 0.871405528 0.946502984 0.879015952 0.91248269 0.892013709 0.93673658 0.945545747 0.942872121 0.861926813 0.924311125 0.851005743 0.864548576 0.807104168 0.890599126 0.959263324 0.964289252 170692416 arylest Burkholderia graminis C4D1M Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia graminis; 1.093634856 1.030867911 1.05494388 1.084692637 1.035148331 1.080512171 1.055837486 1.065233777 1.09059372 1.045484199 1.068293816 1.081034941 1.042184133 1.045017989 1.084808802 1.066902712 1.095431904 1.045171601 217501798 amyA Methylocella silvestris BL2 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Methylocella;species:Methylocella silvestris; 0.824950889 0.834322149 0.833651096 0.875879744 0.869065665 0.814450123 0.800829335 0.801542362 0.811594829 152146204 pgk Beggiatoa sp. SS Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Thiotrichaceae;genus:Beggiatoa; 1.175271068 1.140865559 1.185524618 1.196253757 1.182061332 1.19222184 1.171457659 1.164739292 1.197513317 1.165378571 1.214520448 1.191876753 1.117743421 1.105120654 1.080404695 1.130013447 1.157191326 1.15137068 116194216 cellobiase Chaetomium globosum CBS 148.51 Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 0.86499949 0.852421033 0.865099619 0.860017152 0.843863059 0.85331683 0.848807827 0.856269302 0.865414345 0.863777413 0.795080908 0.809980676 0.798597972 0.831659091 404435009 alkb uncultured bacterium Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria; 0.960039827 0.973734683 0.831926142 0.911313766 0.896120257 0.933427353 0.883363463 0.905024187 0.924484536 0.904827599 0.87239855 0.898836895 0.822987436 0.840012583 0.879233641 0.923426634 0.909994871 397090787 terc Chondromyces apiculatus DSM 436 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Chondromyces;species:Chondromyces apiculatus; 1.035920053 0.953960203 1.012172513 1.01557917 1.018238161 1.071844812 1.010376118 1.014470933 1.015212095 1.054747352 1.058589475 0.989000168 1.008802323 1.003973285 0.976445437 0.979638905 1.116091946 1.045699882 290756889 phenol_oxidase uncultured fungus Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi; 0.867860574 0.929299759 0.940836781 0.907848702 0.941550325 0.92968969 0.889081023 0.883636533 0.930849293 0.891628923 0.951667878 0.921858097 0.881588996 0.918582716 0.913079497 0.908877125 0.92015051 342861872 cutinase Mycobacterium colombiense CECT 3035 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium colombiense; 0.902181351 0.911342996 0.970394161 0.986368545 0.965477776 0.924704782 0.957439375 0.948073205 0.933628474 0.881786138 0.911006076 0.939390345 1.022529304 0.882012378 0.922194196 0.913457051 0.941175135 0.924559995 220913355 fthfs Arthrobacter chlorophenolicus A6 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 1.067974312 1.01430293 1.053174766 0.977948764 1.063459214 1.018619584 1.094879946 1.027932289 1.053690903 0.994924122 1.037087658 1.05855298 1.011589096 0.975816962 0.958471279 1.078512851 1.067920059 1.007052942 116611965 RgaE Arthrobacter sp. FB24 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 1.107094086 1.088896972 1.142698588 1.121546409 1.125213518 1.150735365 1.108048373 1.1323232 1.102162086 1.103151889 1.114590996 1.115669809 1.071446561 1.060775672 1.019402346 1.089924895 1.152741525 1.134857361 1255446 amyA Arthrobacter sp. Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 0.99328438 1.02884389 0.961303945 1.041097791 0.974541769 1.023203448 0.958018139 1.022249762 1.021441947 0.984671966 0.944962743 1.000388321 0.959006533 0.956451412 0.989549787 1.000798791 1.039456228 1.0077776 39839 cda Bacillus sp. Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 1.059104342 1.215380383 1.002971416 1.023033304 1.018400302 0.990258299 1.021217901 1.000766381 1.06338513 1.036182361 0.977873844 0.988437598 0.965046193 0.89417819 0.948842162 0.94907355 0.994397262 1.021197867 114544940 tktA Roseovarius sp. HTCC2601 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pelagibaca;species:Pelagibaca bermudensis; 1.186275282 1.140283103 1.172700122 1.173239516 1.156579617 1.186130658 1.150900759 1.181473984 1.162852794 1.159806739 1.179332661 1.155248701 1.134032408 1.107911948 1.070229427 1.110259929 1.181401067 1.155944435 88865040 FBPase Jannaschia sp. CCS1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Jannaschia; 0.77661689 0.955270955 0.797951172 0.823467153 0.883353805 0.906022442 0.819845084 0.843352367 0.859891656 0.825522729 0.912731851 395762516 cmci Janthinobacterium sp. PAMC 25724 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Janthinobacterium;species:Janthinobacterium lividum; 0.829396722 0.784779081 0.813099094 0.852404523 0.826731099 302548528 pcpe Streptomyces hygroscopicus ATCC 53653 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces himastatinicus; 0.869152103 0.893634381 0.881536251 0.821843448 0.783929129 0.841094269 0.923037984 0.897108896 0.859209885 381360919 urec Bradyrhizobium sp. S23321 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 1.111924789 1.172765141 1.092283166 1.121073646 1.102108617 1.148440572 1.082643056 1.108670376 1.099292469 1.090936635 1.100888404 1.126247375 1.081550564 1.099654334 1.110831082 1.089986904 1.1357918 1.121261482 331694494 pcpb Pseudonocardia dioxanivorans CB1190 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Pseudonocardia;species:Pseudonocardia dioxanivorans; 1.303393672 1.281801259 1.269447088 1.284114615 1.253928901 1.301021149 1.253002758 1.281108907 1.25893711 1.254590829 1.26408763 1.271852585 1.23538341 1.256970463 1.24052238 1.264706047 1.295474476 1.251871355 40253061 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.862947577 0.826569425 0.888698999 0.852514467 0.850726227 0.889600297 0.8873788 0.86489677 0.851523178 0.861269999 0.888066088 0.822076317 0.769237142 0.802888726 0.828715897 0.846706279 330688084 aoxb uncultured bacterium Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 0.860795074 0.87317755 0.848742903 0.822139179 0.811410698 0.836732476 0.889492179 0.809729905 109452440 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.898430705 0.88265036 0.951630042 0.941386425 0.915282393 0.922024588 0.925175532 0.949520132 0.934315923 0.951930044 0.882715329 0.925260169 0.8922255 0.920841691 0.874039245 0.868161009 0.897657232 0.922751767 342316456 aoxb uncultured bacterium Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 0.874888357 0.822366504 0.935845768 0.913177879 0.872353173 0.829720063 118591564 FBP_aldolase Stappia aggregata IAM 12614 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 0.935723547 0.9736681 0.916755899 0.946303037 0.937036369 0.963060406 0.938384727 0.932681393 0.937456388 0.983937132 0.983999412 0.927665156 0.905330728 0.951433789 0.854504299 0.903998757 0.982351797 0.98020944 399020088 tfda Herbaspirillum sp. CF444 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herbaspirillum; 0.83690884 0.811626944 0.780283107 0.802902605 220971138 actin_Stramenopiles Thalassiosira pseudonana CCMP1335 Other Phylogenetic NA superkingdom:Eukaryota;phylum:Bacillariophyta;class:Coscinodiscophyceae;family:Thalassiosiraceae;genus:Thalassiosira;species:Thalassiosira pseudonana; 1.159722865 1.166364999 1.122373413 1.118151768 1.092922341 1.165088381 1.128045899 1.129707187 1.197087247 1.172576555 1.067955917 1.135679949 1.126951291 1.106114035 1.092799508 1.173334567 1.162889388 1.139366911 126740618 poba Roseobacter sp. SK209-2-6 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 0.867766203 0.895889992 0.842681019 0.921917753 0.9054348 0.888285695 0.83099421 0.858820419 0.900095667 0.904457229 0.861230057 0.836773028 0.879071393 0.833977906 0.943837258 0.935057976 78035311 xylanase Xanthomonas campestris pv. vesicatoria str. 85-10 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas euvesicatoria; 0.73155061 0.817470136 114739976 phytase Hyphomonas neptunium ATCC 15444 Phosphorus Phytic acid hydrolysis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Hyphomonas;species:Hyphomonas neptunium; 1.243848578 1.300360367 1.225274623 1.27281846 1.280049543 1.286784607 1.25812935 1.247468904 1.238569662 1.227760555 1.29942585 1.313492533 1.228659612 1.15319355 1.133819637 1.238513662 1.238048303 1.201136245 296091792 chitinase Thermobispora bispora DSM 43833 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Thermobispora;species:Thermobispora bispora; 0.924545168 0.918182751 0.89558455 0.939611127 0.944447213 0.936465155 0.88347771 0.891148373 0.911754893 0.928404879 0.911170562 0.932096509 0.920175926 0.914284767 0.928623373 0.896349269 0.958595831 0.934817088 307632822 acetylglucosaminidase Ferrimonas balearica DSM 9799 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Ferrimonadaceae;genus:Ferrimonas;species:Ferrimonas balearica; 0.822053472 0.786804634 0.827254267 0.775275942 255724796 phospholipase_B_fungi Candida tropicalis MYA-3404 virulence degradation NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;genus:Candida;species:Candida tropicalis; 0.829629492 0.817041039 0.807516944 0.844951575 0.810348556 0.784341213 0.80257612 0.817577721 0.784952598 95111183 catechol Pseudomonas Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae; 1.167093562 1.277986096 1.168863908 1.165764952 1.147777432 1.178627826 1.080651901 1.136051233 1.128718338 1.150338611 1.162236251 1.09853984 1.128921913 1.152188041 1.134529323 1.109766229 1.170455042 1.164363018 387855721 ppx Emticicia oligotrophica DSM 17448 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Emticicia;species:Emticicia oligotrophica; 1.249360087 1.274272106 1.167895221 1.255426532 1.286823116 1.35217057 1.252448 1.203596408 1.239695806 1.255094512 1.320201453 1.285796031 1.251545744 1.166256097 1.103400594 1.196233836 1.305195098 1.20785561 375088045 fthfs Dolosigranulum pigrum ATCC 51524 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Carnobacteriaceae;genus:Dolosigranulum;species:Dolosigranulum pigrum; 0.898042109 0.960864602 0.852840153 0.904745826 0.987336928 0.853445835 0.924997949 0.887013693 0.888523373 0.962452489 0.834486377 0.953586103 0.875393414 0.825508189 0.857429196 0.840067134 0.8588758 383779977 amyA Actinoplanes missouriensis 431 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes;species:Actinoplanes missouriensis; 0.948982373 0.940425524 0.954403663 0.920514368 0.932339591 0.959947783 0.945169931 0.926525542 0.901721933 0.939140344 0.914308233 0.921600272 0.920634643 0.900994325 0.923318881 0.902844849 0.943867384 0.946639189 72162017 xylanase Thermobifida fusca YX Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Thermobifida;species:Thermobifida fusca; 0.783750395 0.810393296 0.819031302 0.790431201 0.805583654 226354803 phenol_oxidase Pycnoporus sanguineus Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Polyporaceae;genus:Pycnoporus; 0.778998344 0.821300082 0.838015949 0.855638542 0.890710522 0.872263083 0.893821101 0.887112834 0.870138012 0.867379601 0.83126425 0.835882698 0.840699087 0.795589677 0.818637963 0.853212532 84502845 pcag Oceanicola batsensis HTCC2597 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola batsensis; 0.808775617 0.883522867 0.82084919 0.817780072 0.854209716 0.864229433 0.864195244 0.915467148 0.843789808 0.865113924 0.822206738 0.833304695 0.836049961 0.843108946 0.803028893 0.807894707 0.897312043 338534644 amyA Myxococcus fulvus HW-1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus fulvus; 0.985608699 1.00296309 0.971849302 0.99808945 0.945731069 0.988157134 0.951954002 0.972361288 0.990597766 0.914599402 0.953926258 0.961624836 0.88280004 0.897148478 0.885839485 0.952889163 0.959824616 0.947725862 124488241 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.278073674 1.227579067 1.243932548 1.299360786 1.257735474 1.209790252 1.265312769 1.300677697 1.270098731 1.224525977 1.222338717 1.279119409 1.242859781 1.181367313 1.215050824 1.211366774 1.251191334 1.21922838 124262290 CsoS1_CcmK Methylibium petroleiphilum PM1 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 0.931852906 0.930137347 0.847673529 0.967923281 0.946056399 0.960294454 0.900324925 0.909369529 0.967788911 0.953442407 0.90154011 0.918281513 0.913230187 0.944923533 0.840549047 0.896041645 0.935836723 0.906366986 366160899 amyA Escherichia sp. TW09308 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia; 0.796322478 0.852654589 0.816891669 0.824303286 0.813510969 0.862174946 0.835776325 0.867086942 256039522 amyA Chitinophaga pinensis DSM 2588 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;genus:Chitinophaga;species:Chitinophaga pinensis; 0.812401571 0.824943398 0.778881269 0.836138114 0.87835227 0.87823801 0.776777981 0.806742979 0.823957842 299755823 cellobiase Coprinopsis cinerea okayama7#130 Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 0.851169743 0.805930106 0.791538147 0.798620404 0.833928073 0.813392496 0.824429167 0.845942947 1.050259943 0.91028878 0.852087201 0.81975579 0.835537147 157912051 GAPDH_Calvin Dinoroseobacter shibae DFL 12 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 1.165731398 1.170104695 1.191811541 1.179164625 1.192898598 1.230884046 1.223102634 1.206737885 1.170290309 1.180238257 1.178890619 1.191011305 1.162671164 1.128589341 1.143037805 1.132021502 1.184802646 1.176827577 89513040 nifh uncultured nitrogen-fixing bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.990630534 0.942014862 0.924212769 0.970866401 0.839574464 0.933587385 0.881548451 0.935387999 1.082321357 0.944379353 0.89813388 0.931835236 0.871048712 0.917471618 0.875989053 0.909412882 0.961996219 0.956112181 121699673 cellobiase Aspergillus clavatus NRRL 1 Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 0.760337635 0.850975721 0.812944096 0.846492596 0.810437725 0.800431136 0.799364492 0.889831694 332011809 B_lactamase_A Sphingomonas sp. S17 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 0.787230203 0.863399066 0.854323821 0.864500914 0.808603875 0.883734254 0.85708795 0.82668989 0.813938595 0.89006754 0.813797206 0.812723467 0.836135877 0.815431648 0.901579806 0.935546159 288942447 ccmL Allochromatium vinosum DSM 180 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Allochromatium;species:Allochromatium vinosum; 0.854780836 0.834658591 0.84403314 0.866339474 0.785904131 0.825859636 0.808544331 0.849133502 0.871551227 74136890 mult_ring_12DiOx Polaromonas naphthalenivorans CJ2 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 0.995068002 0.966793168 0.969566545 1.014640424 0.946017097 0.96850432 0.988932994 0.972571475 1.002077192 0.946438556 0.981732458 0.973955673 0.906521302 0.932939761 0.95975205 0.922530087 0.98356367 0.978851781 371771824 RgaE Prevotella dentalis DSM 3688 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella dentalis; 1.040198393 1.066891898 1.039635486 1.016360645 1.009355436 1.135645594 1.045939486 1.059976008 1.030954615 1.04147414 0.989118065 1.007230946 1.037805455 1.040330954 1.007410796 1.026624357 1.057770508 1.053371857 353675237 pectinase (pectate_lyase) Brenneria sp. EniD312 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Brenneria; 1.039853812 1.020302318 1.045816129 1.082498356 1.033412149 1.023404348 1.049155306 1.066399766 1.059729266 1.053794205 1.043657749 1.106757177 1.020069049 1.006817616 1.004373419 1.016331443 1.031443395 1.005135335 196187326 ppx Brevundimonas sp. BAL3 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Brevundimonas; 1.017694602 1.102385147 1.024504847 1.053852032 1.098638506 1.066039053 1.092202028 1.020879213 1.07979482 1.088773696 1.058989799 1.048805928 1.081375579 1.086213198 0.971012227 1.027187775 1.044472733 1.085247944 157285608 napa uncultured bacterium Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria; 1.032540697 1.004087066 1.006094529 1.070770116 1.021517576 1.014194818 1.035068334 1.041373242 1.037210109 1.00998604 1.021035358 1.036090268 0.974936129 0.974702713 1.014991424 0.989300495 1.025377055 1.002213233 88643417 dsrB uncultured prokaryote Sulfur sulfite reduction NA 0.811923256 0.799689472 66130215 mnp Pleurotus pulmonarius Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Pleurotaceae;genus:Pleurotus; 1.144358591 1.09891094 1.108168633 1.125894675 1.145515318 1.122361167 1.124930832 1.095632492 1.138787333 1.090136301 1.097989283 1.124344437 1.05492875 1.064217623 1.021818241 1.076832474 1.143400933 1.154289982 37925897 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.970014781 0.907423469 0.951338475 0.973512181 0.910212604 0.938577313 0.891547593 0.960800465 1.00308038 0.935476097 0.894272579 0.978893195 0.902562064 0.910044065 0.891871402 0.913101716 0.933107692 1.015014885 158138755 napa uncultured bacterium Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria; 0.908163511 0.929109292 0.88531525 0.847928648 0.86981704 0.870493074 0.898493156 0.901719824 0.902766079 0.842083089 0.846027235 0.890006949 0.937617279 46520023 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.443860545 1.437146414 1.426935011 1.410867112 1.420092896 1.469328817 1.41407099 1.418959018 1.40279257 1.401505422 1.429688475 1.413967368 1.418085776 1.410520757 1.411216708 1.412010445 1.447368637 1.413141077 291536252 xylanase Roseburia intestinalis M50/1 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Roseburia;species:Roseburia intestinalis; 0.974731038 0.985910848 0.988468858 1.002614358 1.014803337 0.981297408 0.924794317 0.914168665 0.975038036 0.958774977 0.937719209 0.967915639 0.951017632 0.903140689 0.950461325 0.933854989 0.976174072 0.991918479 89145106 ppk Microbacterium schleiferi Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Microbacterium; 0.844656224 0.902248404 0.821230623 0.898789313 0.838692641 0.843953222 0.834562906 0.886707202 0.859421108 0.795641916 0.821565011 0.886445483 0.83907873 359838495 cdh Actinoplanes sp. SE50/110 Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes; 0.955555498 0.963464707 0.958975539 0.937367226 0.929106237 0.974374972 0.927999737 0.927741748 0.928909306 0.989114684 0.966535176 0.916582084 0.88453368 0.919154378 0.879983376 0.934322099 0.943882128 0.98140561 297625164 amyA Truepera radiovictrix DSM 17093 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Trueperaceae;genus:Truepera;species:Truepera radiovictrix; 0.864642724 0.88437303 0.827120006 0.856699427 0.888344733 0.819606432 0.863314259 0.890460075 0.876940663 0.815660835 0.802521774 0.861245772 0.838185073 0.828006222 0.901834746 0.88018747 297146695 amyA Streptomyces sviceus ATCC 29083 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 1.324571332 1.321620694 1.29102124 1.301688874 1.277472929 1.339255093 1.271305985 1.299484483 1.280256647 1.273045416 1.293397559 1.289289657 1.276405368 1.272406828 1.254088958 1.268146074 1.317524034 1.313103343 344200583 soxY Acidithiobacillus ferrivorans SS3 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus ferrivorans; 1.024305212 1.004768905 1.019560198 1.046744016 0.982266395 0.995323259 0.999142064 1.060016428 1.008356891 1.024342883 0.995481934 1.072400479 0.958787481 1.000810455 1.014471743 1.028989869 1.035723302 1.036172425 71849022 catechol_b Dechloromonas aromatica RCB Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Dechloromonas;species:Dechloromonas aromatica; 0.852277637 0.836647468 0.887651482 0.877225158 0.897371209 0.881528011 0.900710735 0.92245714 0.884060227 0.867922813 0.868414538 0.811104985 192287065 soxY Rhodopseudomonas palustris TIE-1 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 0.866589029 0.89250294 0.885992407 0.883244225 0.861696218 0.878758586 0.803712529 0.818334184 0.809344082 0.825269078 0.908452301 0.830455821 0.85555588 0.873559301 0.88116694 126729285 PRI Sagittula stellata E-37 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 1.108406036 1.151532427 1.107637313 1.118766963 1.100358945 1.11756609 1.093831882 1.068056721 1.099256683 1.100983569 1.154512603 1.101703397 1.052199706 1.061691738 1.023754231 1.052811941 1.093545897 1.098279205 378597881 TIM Sutterella parvirubra YIT 11816 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Sutterellaceae;genus:Sutterella;species:Sutterella parvirubra; 0.916575732 0.888100933 0.966258881 0.943962237 0.878869583 0.862620207 0.880910057 0.892687782 0.917626749 0.92725641 0.870144108 0.91821734 0.849012389 0.85108013 0.821263096 0.930697432 0.927501345 0.884500077 255949250 cellobiase Penicillium chrysogenum Wisconsin 54-1255 Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 0.822875467 0.876864378 0.846785658 0.851291457 0.857026082 0.849491727 0.836041407 0.867124046 0.821049512 0.820133168 0.822512973 0.862601757 0.845605231 0.876970298 258565189 phospholipase_A2_fungi Uncinocarpus reesii 1704 Carbon Cycling Carbon degradation Phospholipids superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Onygenaceae;genus:Uncinocarpus;species:Uncinocarpus reesii; 0.992758525 0.974188981 0.973092221 0.91267514 1.013492468 1.021861255 0.985656462 0.902438802 0.915425768 0.998451355 1.024232265 1.073127096 0.969017307 1.002915489 1.009730709 0.940092466 0.954493756 0.980811184 312922966 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.867534848 0.87930668 0.870214665 0.940223397 0.860486945 0.862989946 0.880225914 0.927924147 0.880315481 0.90417114 0.903543484 0.908297262 0.861483831 0.867908822 0.876612215 0.876812239 0.950125148 0.861885661 221739355 pcpe Agrobacterium vitis S4 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium vitis; 1.304028251 1.279284387 1.253627958 1.274721318 1.262020884 1.299275688 1.200346471 1.272251151 1.248630564 1.239153656 1.235292685 1.258427785 1.246997681 1.217733071 1.218077998 1.233370197 1.299092736 1.279982026 300390412 fthfs uncultured bacterium Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria; 0.989438311 0.998169798 0.843240787 0.946237975 0.924562338 0.993809199 0.865685612 0.973903824 0.903683117 0.932795963 0.830772349 0.956052062 0.935078385 1.026433692 0.872520518 0.909916072 0.953296242 0.993572045 78066383 mdld Burkholderia sp. 383 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 1.119251888 1.097806086 1.082958153 1.100763862 1.055414298 1.111941442 1.079584314 1.070921744 1.076219303 1.078932301 1.077208132 1.07762356 1.047267935 1.029299066 1.022918136 1.08050879 1.097863155 1.078577693 315250633 pme Prevotella buccae ATCC 33574 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella buccae; 0.89375959 0.966617197 0.944612278 0.934785353 0.894755895 0.934962547 0.847800822 0.840723049 0.851628745 0.93681839 0.845958595 0.8755094 0.863521704 0.884072479 0.934132304 0.892604321 0.89088135 0.932075747 256822230 vgb Kangiella koreensis DSM 16069 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Kangiella;species:Kangiella koreensis; 1.126917413 1.125054439 1.100607671 1.156150856 1.094371291 1.114435132 1.095605146 1.167343492 1.13501163 1.09573147 1.108820465 1.153089009 1.066944498 1.074478208 1.068111381 1.099069474 1.098116686 1.095442369 257054598 amyA Saccharomonospora viridis DSM 43017 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora viridis; 0.917869318 0.92815659 0.895260065 0.89401665 0.900314692 0.871934536 0.896698661 0.899980681 0.877851636 0.905173687 0.855803272 0.832183223 0.827990304 0.816996824 0.822554991 0.862574154 0.859426152 0.880454386 219680360 badh gamma proteobacterium NOR51-B Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 1.070104814 1.053085022 1.022331853 1.059841918 1.041657392 1.049061403 1.050106089 1.059329713 1.039506271 1.026028955 1.111310836 1.0594126 1.040385828 1.020625797 1.008642325 1.039150135 1.050381117 1.029756322 229816957 arsc Bifidobacterium angulatum DSM 20098 = JCM 7096 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium angulatum; 0.860764067 0.860486548 0.892282518 0.942881653 0.902018071 0.933442968 0.905095354 0.921270844 0.897628971 0.848904379 0.902316861 0.898073321 0.820137408 0.842361544 0.840625323 0.827687696 0.8475689 0.848815118 316253364 cysJ Segniliparus rugosus ATCC BAA-974 Sulfur Reduction NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Segniliparaceae;genus:Segniliparus;species:Segniliparus rugosus; 1.267243897 1.283416326 1.245984242 1.263439345 1.279989542 1.282249666 1.221178102 1.238711121 1.226975714 1.22972421 1.258471762 1.261498601 1.251529103 1.293258479 1.222272179 1.240921053 1.259570955 1.231480221 117924334 urec Magnetococcus sp. MC-1 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;genus:Magnetococcus; 1.036696919 1.001377087 0.95326246 0.994425619 0.966694086 0.971068595 0.962399263 0.998294502 1.042357163 1.010103757 0.98688879 1.033145728 0.932103395 0.953174081 0.943366529 0.950381073 1.025570832 0.997922973 334125389 cysI Enterobacter hormaechei ATCC 49162 Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter hormaechei; 1.068091283 1.003266051 0.997248415 1.04982161 0.978723068 1.001064993 0.953079253 0.95843277 1.045230681 1.055090196 1.017050665 1.013860293 0.989787379 0.961999145 0.941369199 0.981204649 1.071162124 1.011948218 257051535 Bacteriorhodopsin Halorhabdus utahensis DSM 12940 Secondary metabolism Pigments Rhodopsin superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halorhabdus;species:Halorhabdus utahensis; 1.578934019 1.569020067 1.570868451 1.541193344 1.544363065 1.591279386 1.538344663 1.549270014 1.52837333 1.56021171 1.557569599 1.557333726 1.525860142 1.52997413 1.532473942 1.532476899 1.538201939 1.54668726 237880780 endoglucanase Actinoplanes garbadinensis Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes; 0.943778293 0.927047412 0.88995243 0.944105629 0.896866717 0.940410058 0.855095725 0.892738958 0.926680564 0.937728587 0.881520705 0.91010022 0.862799864 0.914343565 0.832474928 0.850898604 0.942001859 0.930213439 151302200 aps_apra Desulfonatronum lacustre Sulfur adenylylsulfate reductase NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfonatronumaceae;genus:Desulfonatronum; 1.105163967 1.119576531 1.097247282 1.109447649 1.046377918 1.120660345 1.052026545 1.091095561 1.126408301 1.122789636 1.092181809 1.103700954 1.096682405 1.101332948 1.08116817 1.076381405 1.131402657 1.135461403 349780467 dsra Thioalkalivibrio thiocyanoxidans ARh 4 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio;species:Thioalkalivibrio thiocyanoxidans; 0.807953786 0.88332712 0.831802094 0.827492053 219543239 amyA Chloroflexus aggregans DSM 9485 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aggregans; 0.922853359 0.925725189 1.098306743 0.987746594 0.923816436 0.908028956 0.944962419 0.963396485 0.956033831 0.91694997 0.903810889 0.945655077 0.882642437 0.891903103 0.880358214 0.858798479 0.956901222 0.904040524 307585015 ppx Burkholderia sp. CCGE1003 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 1.147692667 1.123638073 1.125539088 1.114681125 1.1084904 1.179019404 1.130875396 1.105923771 1.124998602 1.16532739 1.147957652 1.144056507 1.13490082 1.144414088 1.095357706 1.126837237 1.140192835 1.139821956 345878703 nirs endosymbiont of Riftia pachyptila (vent Ph05) Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;species:endosymbiont of Riftia pachyptila; 0.877712154 0.836794596 0.829908606 0.85369497 0.838033811 0.818362038 0.876469696 0.891030026 0.809030801 0.875525663 0.837508041 0.841274543 0.841768398 0.861623083 311229110 vana Frankia sp. EuI1c Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 1.112081916 1.078049145 1.126089179 1.087205827 1.10204064 1.156879156 1.110826316 1.104199866 1.086102579 1.105325668 1.121258205 1.086827036 1.081937887 1.101516293 1.044244232 1.0461521 1.087208252 1.079200845 256558203 xyla Brachybacterium faecium DSM 4810 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dermabacteraceae;genus:Brachybacterium;species:Brachybacterium faecium; 1.104772229 1.102169612 1.040157707 1.072042656 1.068348467 1.096161607 1.030845958 1.018253688 1.050256782 1.032475795 1.029015394 1.043241013 1.013501651 1.04346954 1.013002331 1.035757704 1.119169527 1.067531272 239990802 endoglucanase Streptomyces roseosporus NRRL 11379 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces filamentosus; 0.847847438 0.822827023 0.82054844 0.852793896 297156650 cysJ Streptomyces bingchenggensis BCW-1 Sulfur Reduction NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces bingchenggensis; 0.887278149 0.865682125 0.821528834 0.806192772 0.810644872 0.830180036 0.830767558 0.80699987 0.839364853 0.812428563 0.805904438 0.879364303 0.86425088 120603427 terc Desulfovibrio vulgaris subsp. vulgaris DP4 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio vulgaris; 0.97599208 1.015877805 0.944944116 1.024915046 0.965279814 0.966391454 0.916820129 0.956169377 0.941698712 0.96955741 0.896552742 0.98742629 0.95566019 0.942843451 0.937665942 0.963114294 0.948338594 0.970403584 220962102 linb Ancylobacter aquaticus Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Ancylobacter; 0.935362603 0.800216943 0.781689398 0.900382176 356690432 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.938660282 0.782208771 0.795029554 0.793427693 0.817516312 0.798185461 0.843373708 0.86730489 0.81746471 0.781952791 0.81892081 218989010 phenol_oxidase Boletus edulis Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Boletales;family:Boletaceae;genus:Boletus; 0.944932779 0.976987436 0.935173085 0.912622312 0.970551586 0.950420057 0.928528779 0.939756644 0.916261028 0.938735612 0.908875924 0.955907513 0.949123116 0.975981155 0.922327407 0.891722179 0.947709795 0.939814947 88863738 GAPDH_Calvin Jannaschia sp. CCS1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Jannaschia; 0.766825966 0.824747727 0.788929452 0.78546795 386436186 aln Herbaspirillum sp. GW103 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herbaspirillum; 1.086870671 1.034942279 1.003279345 1.031161969 1.057657643 1.015613388 1.042044224 1.047969133 1.019216749 1.006921623 1.074979365 1.074518966 170781373 rgl Clavibacter michiganensis subsp. sepedonicus Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Clavibacter;species:Clavibacter michiganensis; 1.056858744 1.031051332 1.076574245 1.026544745 1.009218901 1.016678827 0.978681361 0.996148372 1.01810874 1.0116805 0.983986798 1.030064701 1.019515651 1.012153301 0.967331795 1.005254146 1.05319383 1.045803539 144905985 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.031258964 0.963153765 1.011595471 1.02637037 0.96219729 0.965441344 0.985255047 0.983575808 1.018213476 1.022351616 1.020894395 1.023240007 0.984359628 0.969387754 0.978723543 0.943363058 1.037863019 1.033042223 359303685 rubisco Arthrobacter globiformis NBRC 12137 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter globiformis; 0.821986431 0.816096825 0.837902014 0.817123715 0.828266004 0.845135516 0.839870203 0.788391619 0.839573207 0.860687376 356882022 norb Azospirillum brasilense Sp245 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum brasilense; 0.772317386 0.821780906 0.862048097 0.862030626 0.813587085 126438843 nosz Burkholderia pseudomallei 668 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia pseudomallei; 0.984492281 0.946812513 0.947001991 0.991363533 0.968060622 0.935382162 0.959920558 1.017047014 0.981165378 0.923295184 0.994839452 0.986023458 0.91454321 0.876455814 0.891950793 0.913798516 0.967766117 0.948752082 325917689 amyA Xanthomonas vesicatoria ATCC 35937 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas vesicatoria; 0.838046094 0.868298558 0.804205995 0.851791506 0.825218494 0.840964838 0.846117593 0.79733492 0.864394519 0.790023639 0.862821004 0.773500293 0.834068677 110819001 cdh Rhodococcus sp. RHA1 Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 1.106422376 1.158953705 1.089260524 1.094720657 1.087250964 1.14479672 1.031021261 1.051349359 1.037227103 1.060122634 1.086618486 1.073194266 1.055269534 1.085966435 1.036306303 1.040277263 1.061846203 1.098771972 255084493 nitrate_reductase Micromonas sp. RCC299 Nitrogen N Assimilation NA superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Mamiellophyceae;order:Mamiellales;genus:Micromonas; 0.960303008 0.960548414 0.988236739 0.979987652 0.944811747 0.967226253 0.95503841 0.922594386 0.940053532 0.987556068 0.97907682 0.984905686 0.935271215 0.934177914 0.918229403 0.98104596 0.952278325 0.988637104 308226363 amyA Oscillochloris trichoides DG6 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Oscillochloridaceae;genus:Oscillochloris;species:Oscillochloris trichoides; 0.850697489 0.822347631 0.928519909 0.88498185 0.908133813 0.855833644 0.93267357 0.918581326 0.885355659 0.870006968 0.93826664 0.919484191 0.854453794 0.840893329 0.870807081 0.842910363 0.925807244 0.932015326 297165558 arsc Truepera radiovictrix DSM 17093 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Trueperaceae;genus:Truepera;species:Truepera radiovictrix; 0.8847818 0.892522003 0.821389536 0.872842786 0.86178047 0.875726147 0.840850196 0.868074002 0.903326092 0.867192868 0.831984072 0.88473211 0.849380809 0.852965988 0.92014248 109452497 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.974047407 0.946421956 0.947335506 0.981718266 0.960538021 0.921980211 0.944665369 0.97890216 0.937399215 0.92820363 0.937042203 0.993839817 0.876419371 0.902348885 0.911965376 0.904607997 0.947925349 0.924418425 258576755 cellobiase Uncinocarpus reesii 1704 Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Onygenaceae;genus:Uncinocarpus;species:Uncinocarpus reesii; 0.875589132 0.937340549 0.854829251 0.840947743 0.856273237 0.909683941 0.85591597 0.864308425 0.887137595 0.883874218 0.840769978 0.87929185 0.885347764 0.885023189 0.858776238 0.876653874 0.909806585 0.929178762 256361823 linb Catenulispora acidiphila DSM 44928 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 1.207682203 1.199434079 1.147818451 1.192174669 1.145484427 1.204561529 1.150136283 1.189201263 1.19277591 1.146680641 1.163372661 1.143032098 1.122364792 1.135736023 1.107050986 1.135618043 1.214280383 1.192623129 115422025 ppk Bordetella avium 197N Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella avium; 0.901219657 0.911187356 0.89318498 0.92872171 0.92075806 0.889329763 0.953114747 0.92714554 0.919622893 0.914119409 0.899362424 0.925253693 0.906906157 0.869936201 0.864770197 0.873769509 0.871396444 0.911865733 365834519 CsoS1_CcmK Hafnia alvei ATCC 51873 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Hafnia;species:Hafnia alvei; 0.796817796 0.808154527 0.799772284 0.810851342 0.821997545 0.797383684 350533755 B_lactamase_A Vibrio rotiferianus DAT722 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio rotiferianus; 0.964436736 0.914718146 0.932781387 0.936516993 0.911174341 0.932704482 0.893508434 0.898332906 0.944396075 0.948677827 0.971048295 0.943290782 0.90915835 0.97030527 0.955380048 0.904935461 0.926514259 0.92717869 296100572 xyla Enterobacter cloacae subsp. cloacae ATCC 13047 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter cloacae; 0.90042628 0.891453051 0.893877007 0.896611112 0.922967144 0.898353927 0.857835143 0.913158376 0.939242586 0.857296459 0.904832922 0.944008729 0.875456433 0.843859865 0.889191691 0.862954622 0.925759509 0.899064463 56684776 cmua Aminobacter lissarensis Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Aminobacter; 0.953437182 0.953668282 0.884204606 0.94098525 0.926732115 0.930497301 0.891502603 0.916397211 0.928766293 0.917643174 0.910821634 0.934044875 0.911372733 0.83905297 0.845073342 0.847025759 0.926044004 0.915516904 164455306 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 1.106010408 1.0734454 1.114648365 1.073986747 1.030899369 1.105668076 1.016207058 1.030429091 1.081402079 1.1058469 1.075336512 1.032730135 1.067628267 1.078898075 1.013442879 1.052677811 1.096195045 1.090872886 126729399 ben_bcla Sagittula stellata E-37 virulence NA NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 1.223590925 1.173443307 1.163186815 1.206856804 1.182849938 1.168788973 1.14452895 1.166918492 1.165800286 1.144448684 1.148083786 1.170876486 1.151689862 1.106883042 1.156963703 1.128511265 1.195303604 1.144117305 220904639 CsoS1_CcmK Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio desulfuricans; 1.029848974 1.006502177 1.032219363 1.029195581 0.928109036 0.968632394 0.972769963 0.982304206 1.01689719 1.002349189 0.955633141 1.012607027 0.9600544 0.956981923 0.954654274 0.951172402 0.998571775 1.031059744 356643410 dehh109 Pyrobaculum sp. 1860 Organic Remediation Chlorinated solvents NA superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum; 1.106168231 1.081721621 1.127690754 1.070468809 1.131198547 1.07481011 1.060733745 1.048106083 1.073478602 1.123698299 1.088208485 1.087173689 1.151933554 1.093769683 1.120307783 1.05606482 1.059621805 1.105717177 388602501 chitinase Vibrio campbellii DS40M4 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio campbellii; 1.099392964 1.070588661 1.080258765 1.090356908 1.005048461 1.093719546 1.044392538 1.072833608 1.052176061 1.06202781 1.015325855 1.046308002 0.991130206 1.027626143 0.93777416 1.018399558 1.075547227 1.124928994 372281626 GAPDH_Calvin Oceanicola sp. S124 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola; 0.940393905 0.875089959 0.891472638 0.983010855 0.930239114 0.929374379 0.942897955 0.945100982 0.937522799 0.924614547 0.863380367 0.902062737 0.893470222 0.886760763 0.848912738 0.893019132 0.917932029 0.937192371 118568740 cutinase Mycobacterium ulcerans Agy99 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium ulcerans; 0.998524368 1.004633494 1.022208512 1.063523558 1.025351351 1.000789882 1.008064373 1.029892 1.027861655 0.967798145 1.004493812 1.063737293 0.992569696 0.96903213 0.945908761 0.979804215 1.026614624 0.993456393 284014387 tehb Haloterrigena turkmenica DSM 5511 Metal Homeostasis Tellurium Detoxification superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloterrigena;species:Haloterrigena turkmenica; 0.762260161 0.822074989 29466006 norb uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.315377212 1.318292386 1.309807762 1.301409452 1.327292857 1.324983691 1.285800485 1.294050568 1.32563862 1.318970448 1.314041755 1.30611086 1.283931945 1.294470149 1.309021115 1.295121321 1.329134874 1.299525462 225574166 pula Blautia hydrogenotrophica DSM 10507 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Blautia;species:Blautia hydrogenotrophica; 0.769725818 0.816318856 322434602 ppx Granulicella tundricola Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Granulicella; 1.148603432 1.096827158 1.111907034 1.109860215 1.085390077 1.045214681 1.005084109 1.067397869 1.122909332 1.051860098 1.073198926 1.137413725 1.077637216 1.045541526 1.054647799 1.043180195 1.114723113 1.097479118 378784051 lmo Blastococcus saxobsidens DD2 Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Geodermatophilaceae;genus:Blastococcus;species:Blastococcus saxobsidens; 1.227506867 1.191668 1.192929225 1.18839862 1.190858099 1.239278078 1.176538653 1.192768148 1.190987681 1.19165375 1.174832384 1.179900656 1.172164878 1.159850098 1.152702185 1.163009923 1.228704293 1.194888972 357975213 one_ring_23diox Sphingomonas sp. KC8 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 1.157056917 1.110486008 1.148029643 1.138815983 1.157714426 1.184843846 1.127316033 1.143524938 1.12673188 1.193465275 1.188930355 1.142049056 1.125886009 1.241279283 1.187286017 1.130849376 1.15007503 1.154756908 319779915 linb Mesorhizobium ciceri biovar biserrulae WSM1271 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium ciceri; 1.023646176 1.029069147 1.03573346 1.037937159 1.034458286 1.08362292 1.029456749 1.021867422 1.01330208 1.055566248 0.995341501 1.048537026 1.001650433 1.028794754 0.984763386 1.0110261 1.013380051 1.045694469 256036515 amyA Chitinophaga pinensis DSM 2588 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;genus:Chitinophaga;species:Chitinophaga pinensis; 1.121152275 1.072889264 1.098181973 1.151594411 1.135301191 1.094356853 1.157901553 1.140725691 1.149193416 1.115338695 1.118088994 1.122209335 1.109842478 1.059996462 1.066047226 1.082372993 1.116660437 1.123269248 94470931 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 1.12046759 1.065637131 1.12553963 1.123451521 1.112449246 1.113246961 1.107711629 1.12970918 1.09430521 1.080255861 1.112207596 1.111567508 1.041116294 1.04265194 1.061159266 1.065725842 1.158489506 1.112689529 62149132 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 1.136965585 1.088046471 1.06286401 1.090701808 1.071748351 1.077974926 1.039974161 1.110276135 1.124716887 1.045705039 1.060379446 1.067662787 1.046635916 1.043728284 1.061879501 1.085293135 1.119755927 1.079992736 283950501 xylj Conexibacter woesei DSM 14684 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Solirubrobacterales;family:Conexibacteraceae;genus:Conexibacter;species:Conexibacter woesei; 1.011142401 1.050240809 1.080696546 1.021545227 1.020644713 1.03681791 1.007783286 0.961002096 0.990751469 1.013940059 1.032014728 1.034834946 0.985691972 1.003520657 0.969530776 0.991454193 1.021089972 1.017247722 148254171 hbh Bradyrhizobium sp. BTAi1 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.840549727 0.848498488 0.814422451 0.873505846 0.824607112 0.81226482 0.834558747 0.820819827 0.809382 0.829580642 0.864839899 0.802984117 0.846551836 0.866037679 407715608 mdlb Cycloclasticus sp. P1 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Cycloclasticus; 0.853303438 0.856445375 0.885597936 0.809754414 0.828561243 0.82569413 0.859750106 0.8457377 0.843485135 0.836261542 0.829149317 0.829199976 283488056 hao Methylomonas sp. 16a Nitrogen Nitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylomonas; 1.004180281 1.004343818 0.950072549 0.982231701 1.042747009 1.01261229 0.976321104 1.003725775 0.989648112 0.9980001 0.969706604 0.995041391 0.998953458 0.949571343 0.973006726 0.9851516 0.961454203 0.977821631 379733761 linb Blastococcus saxobsidens DD2 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Geodermatophilaceae;genus:Blastococcus;species:Blastococcus saxobsidens; 1.176538648 1.166636807 1.16238709 1.140597562 1.137807469 1.174204724 1.146093882 1.147620008 1.144802337 1.149127227 1.16055317 1.14695085 1.145020734 1.131191978 1.123681651 1.126597082 1.153265153 1.138911621 171677628 pec_Cdeg Podospora anserina S mat+ Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Lasiosphaeriaceae;genus:Podospora;species:Podospora anserina; 1.138558401 1.077595568 1.145853153 1.182048568 1.148267549 1.145925111 1.155108852 1.172458482 1.165092331 1.125013069 1.158972539 1.150382225 1.10441276 1.077144285 1.09659995 1.131847525 1.150041952 1.06620223 341869001 arra uncultured bacterium Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 0.866899584 0.87723661 0.82419479 0.862917536 0.829483586 0.828999053 0.820416495 0.859561289 0.820142506 0.796627576 0.851164352 0.89466373 260428545 ppk Citreicella sp. SE45 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Citreicella; 0.941666437 0.907609706 0.909944066 0.945129866 0.813708425 0.877914114 0.862418892 0.897255634 0.88143271 0.901506289 0.893983149 0.882886138 0.841640788 0.959354078 0.888757227 359821868 limeh Mycobacterium rhodesiae NBB3 Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 0.93009526 0.837048646 0.929400542 0.908771135 0.857261941 0.84047687 0.851969853 0.92123875 0.829103666 0.863091024 0.834720681 0.861357109 0.872302072 0.833709594 0.897578693 0.87314371 344200929 FBPase Acidithiobacillus ferrivorans SS3 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus ferrivorans; 1.114096041 1.084161325 1.117949239 1.115173192 1.050144939 1.085591244 1.057588733 1.067355437 1.104481956 1.089511755 1.106845546 1.067942805 1.05507562 1.062248764 1.032182467 1.047251702 1.082664428 1.084561042 237846158 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.38856424 1.364213528 1.353522229 1.375674561 1.335151879 1.400738275 1.354636963 1.363194536 1.34760351 1.348696794 1.343497271 1.367470626 1.297811845 1.319334985 1.282342499 1.339348176 1.365528692 1.344407092 374348834 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.133400404 1.113496306 1.09376664 1.094575674 1.086080472 1.106638844 1.066096296 1.102795389 1.066454804 1.091580807 1.064571726 1.093419624 1.056217108 1.033408959 1.033543304 1.045962898 1.091068661 1.101329221 330897516 catb Pseudomonas syringae pv. japonica str. M301072 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae; 0.99801697 0.985160577 0.946392615 0.980619354 0.94314446 0.975845145 0.971933856 0.940643103 0.980351836 0.972212911 0.996523968 0.972208234 0.928506177 0.940541893 0.924186187 0.934517373 0.958075048 0.970109208 13591776 alkb Nocardioides sp. CF8 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 0.788521485 0.854467153 0.840250256 0.809476637 0.850478241 0.807742975 0.813552929 0.903786235 170109003 p450aro Laccaria bicolor S238N-H82 Organic Remediation Aromatics polycyclic aromatics superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Tricholomataceae;genus:Laccaria;species:Laccaria bicolor; 1.097778611 1.094492567 1.067395747 1.124213133 1.090929261 1.136366594 1.076598044 1.068097552 1.105827569 1.087161825 1.068161247 1.093364349 1.073098236 1.050347788 1.018434215 1.09104573 1.181561093 1.070120445 375138306 ppx Mycobacterium rhodesiae NBB3 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 0.880969865 0.870935378 0.892930872 0.887390049 0.8746644 0.881762944 0.893022342 0.887317108 0.832650174 0.882146475 0.887248394 0.872185686 0.827446553 0.807973026 0.811468255 0.86462427 0.894960793 148807326 metc Pseudomonas aeruginosa Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.952317223 0.918858617 1.009203566 1.0202841 0.988391881 1.030404911 1.027492299 1.021509708 1.012542474 0.989336045 0.988320952 0.995189188 0.940229443 0.957752961 0.950209757 0.93065961 1.017044641 1.008200335 115254579 phn Rhizobium leguminosarum bv. viciae 3841 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 1.313062366 1.293153613 1.285265024 1.313193646 1.261533592 1.297605578 1.270344312 1.270620037 1.270844595 1.286755368 1.287913149 1.298564714 1.251525399 1.235120613 1.226347525 1.270994898 1.297667863 1.265460115 307545444 narg Halomonas elongata DSM 2581 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas;species:Halomonas elongata; 0.825123703 0.861221144 0.87917565 0.858323686 0.808123507 0.892466213 0.849527427 0.890835922 0.872147208 0.881825104 0.829838432 0.837936932 229566583 terc Beutenbergia cavernae DSM 12333 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Beutenbergiaceae;genus:Beutenbergia;species:Beutenbergia cavernae; 0.830475554 0.78927492 0.844505709 0.844459618 345012307 badh Streptomyces violaceusniger Tu 4113 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces violaceusniger; 0.96125548 0.929376601 0.92209595 0.940352067 0.876718397 0.937272766 0.861583928 0.928997076 0.946170408 0.907228121 0.840741292 0.904160139 0.839556532 0.860578942 0.802954126 0.866548076 0.963247298 0.949982917 331000563 endoglucanase Parasutterella excrementihominis YIT 11859 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Sutterellaceae;genus:Parasutterella;species:Parasutterella excrementihominis; 0.846267358 0.806366866 0.86053787 0.800685777 0.815409627 0.817591624 0.812958967 0.835936855 0.855145229 0.839281219 119958186 hcaacd Mycobacterium vanbaalenii PYR-1 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 0.926501291 0.970139534 0.907082275 0.954187548 0.922554761 0.94228374 0.891152065 0.907923009 0.931370212 0.93372859 0.916396873 0.924188506 0.873674566 0.897629222 0.836582437 0.906032553 0.938249634 349782685 tktA Thioalkalivibrio thiocyanoxidans ARh 4 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio;species:Thioalkalivibrio thiocyanoxidans; 0.994332169 0.981231317 0.989844414 0.991953875 0.927661713 1.002357106 0.95836662 0.977757601 0.993146118 0.996411438 0.938049265 0.978269676 0.936888477 0.970092087 0.929200367 0.946429981 0.9500161 0.967983606 333374317 B_lactamase_A Desmospora sp. 8437 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Thermoactinomycetaceae;genus:Desmospora; 0.784446503 0.819337834 0.790468494 0.907634075 0.802004213 0.837198957 0.837174534 387847392 linc Fibrisoma limi BUZ 3 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Fibrisoma;species:Fibrisoma limi; 0.975491111 0.978996866 0.992294225 0.996409504 1.093210272 1.057722709 1.050236296 0.986405464 0.994564971 1.001535677 0.95312758 1.016449941 0.987106527 1.049013138 1.077840794 1.102401377 0.971680171 1.0092111 116804518 nasa uncultured prokaryote Nitrogen Assimilatory N reduction NA 0.933248519 0.930329736 0.8769593 0.923353881 0.882312298 0.874632202 0.855163202 0.848188501 0.897087841 0.868337297 0.853264467 0.879369691 0.872563827 0.876457457 0.866780439 0.813436088 0.916912974 0.950898843 355385936 amyA Clostridium clostridioforme 2_1_49FAA Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium clostridioforme; 1.079795804 1.062140742 1.059308308 1.052030542 1.011563925 1.000208387 0.985900036 1.053876868 1.075714989 1.05900025 1.03588509 1.057939074 0.974005321 1.000531948 0.991778228 1.014659281 1.043875494 1.071670922 211905521 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.993034023 0.950940455 0.979947341 1.032247098 0.95519615 0.954902635 0.920262729 0.957393362 0.974682123 0.935791839 0.937465836 0.915726027 0.937703063 0.884773062 0.918374119 0.926731489 1.007741176 0.959154375 118660526 vana Burkholderia multivorans ATCC 17616 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 0.913839567 0.955646329 0.89741238 0.869582219 0.890545845 0.953603813 0.907154839 0.862821071 0.916439067 0.956183096 0.925244706 0.929167603 0.9051014 0.883557283 0.882406293 0.93158033 0.943999824 0.945765184 373485720 thl Holophaga foetida DSM 6591 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Acidobacteria;class:Holophagae;order:Holophagales;family:Holophagaceae;genus:Holophaga;species:Holophaga foetida; 0.81917498 0.827433721 0.903984136 0.784877959 0.94826175 0.8328796 0.785530428 0.836149317 146300098 terc Flavobacterium johnsoniae UW101 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Flavobacterium;species:Flavobacterium johnsoniae; 0.828966461 0.810751916 154175149 nosz Campylobacter curvus 525.92 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter curvus; 0.86960255 0.889307136 0.93713521 0.963087703 0.942924794 0.916364865 0.936600971 0.945063463 0.92814783 0.928667917 0.853058398 0.967100906 0.925837441 0.875401801 0.866167534 0.914966955 0.945907546 0.874688036 7105985 amyA Streptomyces coelicolor A3(2) Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 1.369625207 1.365543188 1.348620035 1.333118482 1.327965132 1.384965614 1.323621638 1.327311202 1.324810349 1.348093871 1.331334449 1.340935466 1.298655531 1.319370834 1.282402194 1.328661644 1.345625055 1.352542347 90206686 terc Mycobacterium vanbaalenii PYR-1 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 1.131598621 1.095254162 1.106862507 1.106669761 1.091069248 1.125918148 1.08562778 1.099664661 1.077505443 1.083110257 1.109727864 1.09091802 1.063865484 1.055943849 1.018649488 1.051706404 1.109813214 1.067456169 283820330 amyA Spirosoma linguale DSM 74 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Spirosoma;species:Spirosoma linguale; 1.041749867 1.046078017 1.058710694 1.067839234 1.056184336 1.093306817 0.998394537 1.041533821 1.03717195 1.030913719 1.025142979 1.010401876 1.025904971 1.067976727 1.009585601 1.026388888 1.039262711 1.058499221 89047094 ara Oceanicola granulosus HTCC2516 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola granulosus; 1.02128957 1.02125012 0.999264379 0.998846793 1.010741769 0.981084824 0.956014351 0.964268926 0.978559261 1.004164731 0.995250005 0.996580773 1.005197769 0.964854201 0.948374039 0.967235536 1.020541227 1.017172783 253689315 ppx Pectobacterium carotovorum subsp. carotovorum PC1 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium carotovorum; 0.822157787 0.860833144 0.828780053 0.821095957 0.881462856 0.811371557 0.803282267 0.842202014 0.872282749 315001610 aoxb uncultured beta proteobacterium Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria; 1.073546807 1.07355299 1.09889366 1.168622272 1.113800956 1.074999866 1.127332719 1.15313389 1.103236034 1.105517682 1.090574224 1.156084976 1.071022233 1.051680915 1.085571653 1.097320741 1.015321845 1.017367849 86748074 tktA Rhodopseudomonas palustris HaA2 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 0.858275933 0.805539557 0.82934112 0.902639526 0.861856237 0.894095728 0.827826327 0.801543528 0.823563098 0.870372203 0.87596929 0.847264676 0.81386732 0.882400913 0.875891228 160932268 ara Clostridium leptum DSM 753 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium leptum; 0.851908999 0.848472174 0.846561612 0.920674683 0.861000747 0.861810837 0.873678628 0.866859038 0.870438786 0.865750197 0.858308699 0.871980486 0.840903129 0.795100407 0.814848256 0.844079499 0.871158537 0.849078262 209542700 pgk Gluconacetobacter diazotrophicus PAl 5 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter diazotrophicus; 1.421934982 1.393436879 1.378756596 1.381271218 1.376127216 1.421355297 1.352665935 1.391543382 1.392819252 1.36545317 1.363743927 1.379059455 1.354043851 1.346803003 1.335632327 1.364162162 1.400671807 1.374923972 288338072 amyA Prevotella buccae D17 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella buccae; 0.787753767 0.790735065 0.825888804 0.801173543 384214990 phn Bradyrhizobium japonicum USDA 6 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 1.28758126 1.245208789 1.258777313 1.294914649 1.267767511 1.265522518 1.274066717 1.275682507 1.277015571 1.281215856 1.291912943 1.310561586 1.218193074 1.233112941 1.219256035 1.27328421 1.263149568 1.249523089 48131 amyA Thermomonospora curvata Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Thermomonosporaceae;genus:Thermomonospora; 0.994319766 0.999354269 0.955247236 0.957814086 0.904909158 1.001767409 0.898288786 0.978879572 1.012563971 0.960249251 0.9230837 0.893543313 0.887878636 0.915086292 0.879024239 0.905956181 0.954537602 0.979581128 255935331 dehh109 Penicillium chrysogenum Wisconsin 54-1255 Organic Remediation Chlorinated solvents NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 0.866404141 0.878772675 0.802169469 0.805591326 74057302 ara Thiobacillus denitrificans ATCC 25259 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus;species:Thiobacillus denitrificans; 0.929955871 0.917006808 0.971458167 0.940235457 0.894106329 0.891459095 0.856910443 0.90911024 0.957162394 0.888638689 0.884343308 0.934846419 0.8524654 0.907622032 0.869235156 0.892641344 0.902551964 0.885543888 85715657 ppx Nitrobacter sp. Nb-311A Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter; 0.948075196 0.900572362 0.956348324 0.951399813 0.959917648 0.918051659 0.984262751 0.982677989 0.904359223 0.931585115 0.930875255 0.924069489 0.831565252 0.856821141 0.885120437 0.884593809 0.96955431 0.996800666 91795177 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.936240567 0.891599884 0.827873699 0.900992633 0.876225996 0.897597038 0.866393787 0.886015544 0.843153683 0.860576069 0.850385144 0.877239929 0.877332416 0.859442789 0.855647783 0.892014823 0.887914459 0.889726549 124257903 tutfdg Desulfobacterium cetonicum Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfosarcina; 0.828787376 0.805361466 0.856866556 0.807083542 0.844226953 0.816702171 21224407 amyA Streptomyces coelicolor A3(2) Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 1.22235176 1.23560214 1.184051379 1.172814493 1.186794232 1.235280663 1.157369688 1.125753408 1.164893887 1.221463635 1.201761183 1.173724629 1.1421603 1.190712204 1.116720294 1.15095777 1.178384835 1.200635741 167628475 terc Heliobacterium modesticaldum Ice1 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Heliobacteriaceae;genus:Heliobacterium;species:Heliobacterium modesticaldum; 0.988822643 0.909617409 1.063389403 1.003436516 1.039693689 1.060750599 1.051888009 0.987349033 1.01021097 1.095146686 1.114371098 1.007522504 1.027954437 1.152216411 1.072909821 0.914975327 0.994328147 0.973236096 219995470 TIM Thioalkalivibrio sulfidophilus HL-EbGr7 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio;species:Thioalkalivibrio sulfidophilus; 0.936674705 0.955651329 0.919220106 0.982822458 0.959316554 0.927368268 0.91573505 0.962532365 0.967993381 0.942199193 0.968778068 0.998582464 0.92066644 0.932639549 0.877312543 0.947800273 0.980399314 0.945746629 359355028 b_lactamase Dechlorosoma suillum PS Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azospira;species:Azospira oryzae; 1.260415479 1.237848457 1.262330296 1.275350746 1.23976691 1.286154443 1.20521954 1.239451285 1.231784176 1.232170994 1.222880352 1.25171133 1.213969941 1.182218372 1.198397352 1.210700061 1.248860037 1.230821188 332668869 rgl Cellulomonas fimi ATCC 484 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas;species:Cellulomonas fimi; 1.069545583 1.053724334 0.929000061 1.031809088 0.9122091 0.993015092 0.964095935 1.008040556 0.990326009 0.994707934 0.895324879 1.015552235 0.868459916 0.949036169 0.828169709 0.926815212 1.05973802 1.054907618 284029242 amyA Kribbella flavida DSM 17836 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Kribbella;species:Kribbella flavida; 0.839571215 0.91477806 0.87163908 0.847462998 0.805430731 0.833119215 0.817063434 0.864692331 0.866435793 0.804713314 0.830040636 0.808926342 0.859418288 0.799140488 0.892293178 0.876747673 349701885 vana Gluconacetobacter europaeus LMG 18494 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter europaeus; 1.113348377 1.130272388 1.100141038 1.122632054 1.125284885 1.091567455 1.12743678 1.134775948 1.099124955 1.095362013 1.073768364 1.138243667 1.080312025 1.049713888 1.086562532 1.126006334 1.092320716 1.070927854 114335646 cysI Shewanella frigidimarina NCIMB 400 Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella frigidimarina; 0.772572499 0.825793519 375108807 xyll Alishewanella jeotgali KCTC 22429 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alishewanella;species:Alishewanella jeotgali; 1.02593721 1.0163952 0.993182709 1.035795138 1.01949378 1.035939882 1.009113147 1.021573635 1.000043901 1.001109779 0.977506672 1.03359384 0.952618293 0.980386958 0.986849539 0.96955375 1.021483803 1.043503004 298252100 terc Ktedonobacter racemifer DSM 44963 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Chloroflexi;class:Ktedonobacteria;order:Ktedonobacterales;family:Ktedonobacteraceae;genus:Ktedonobacter;species:Ktedonobacter racemifer; 0.865005584 0.910214861 0.887664084 0.924437124 0.892526008 0.916619002 0.912661972 0.904469735 0.898206726 0.89589828 0.913386856 0.916051196 0.851490404 0.87073134 0.809447229 0.839880799 0.898540848 0.943441931 313623192 chitinase Listeria innocua FSL J1-023 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Listeriaceae;genus:Listeria;species:Listeria innocua; 0.865412283 0.815158078 0.97492105 0.948493208 0.875775983 0.932654592 0.923825565 0.937516728 0.970380441 0.938362754 1.068108879 0.933456042 0.894931178 0.898944413 0.937471271 0.890476171 0.875516131 0.85591922 14389215 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.089816518 1.026684041 1.023064534 1.079970561 1.026044318 1.067318031 1.058725187 1.064589759 1.071145837 1.037684124 0.971396642 1.05846034 1.004933856 0.97688592 0.972282657 0.991238133 1.032492094 1.073456916 357428333 cellobiase Azospirillum lipoferum 4B Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum lipoferum; 1.114504917 1.123484585 1.098670051 1.110955175 1.111788288 1.138822615 1.09701375 1.087996938 1.076141057 1.106555788 1.110497535 1.10826241 1.108905522 1.080137142 1.039763904 1.08712147 1.13541808 1.088651472 85062816 amie Nocardia sp. YS-2002 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia; 0.904084071 0.900702696 0.869916634 0.872630328 0.894667237 0.950220073 0.900987752 0.933804786 0.908470414 0.908183437 0.884404649 0.903225879 0.88393883 0.873642712 0.845936563 0.958905706 0.884261629 363616017 amyA Subdoligranulum sp. 4_3_54A2FAA Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Subdoligranulum; 1.033335463 1.010816687 0.977747608 1.035868373 0.978181938 1.008704026 0.976708634 0.992239355 1.023688458 0.990370477 0.991363414 1.000615721 0.977930915 0.940109532 0.874472296 0.951482391 1.025025312 0.986961445 294635429 arsc Edwardsiella tarda ATCC 23685 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Edwardsiella;species:Edwardsiella tarda; 0.932392469 0.931918535 0.971574325 0.907241559 0.931739205 0.921998771 0.943186139 0.923314044 0.961107844 0.949849783 0.940129822 0.933289455 0.881852877 0.919721388 0.873596926 0.882036929 0.964292797 0.967381748 159180619 SoxC alpha proteobacterium BAL199 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 1.196600838 1.145038633 1.162760026 1.176031511 1.163828046 1.177844902 1.175657461 1.1832568 1.190018525 1.156462428 1.153817878 1.175542603 1.167627015 1.105668543 1.111684579 1.107871441 1.189114255 1.11274377 190346340 lipase_fungi Pichia guilliermondii ATCC 6260 Carbon Cycling Carbon degradation Lipids superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Debaryomycetaceae;genus:Meyerozyma;species:Meyerozyma guilliermondii; 0.94988817 0.989967372 0.869780057 0.967082078 0.933175645 0.992516294 0.945106714 0.932394846 0.979963231 0.95827988 0.912240539 0.96092661 0.92127416 0.912238549 0.918643086 0.875034317 0.994698272 0.979723822 257171494 chitinase Halomicrobium mukohataei DSM 12286 Carbon Cycling Carbon degradation Chitin superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halomicrobium;species:Halomicrobium mukohataei; 0.844995479 0.885254848 0.911282756 0.889612155 0.859772751 0.880845924 0.859399157 0.831887734 0.88725562 0.876751028 0.852567657 0.878487846 0.841259349 0.841734359 0.82216336 0.876303857 0.881889604 90424394 tktA Rhodopseudomonas palustris BisB18 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 1.100277257 1.111545479 1.100227664 1.048795999 1.019346869 1.057961163 1.00092833 1.034037706 1.053221361 1.07741162 1.035145957 1.073304183 1.031472159 1.041929412 1.004287739 1.012138703 1.107418054 1.112746747 302464010 pectinase (pectate_lyase) Streptomyces himastatinicus ATCC 53653 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces himastatinicus; 0.797613259 0.841000811 0.794898419 0.94183204 0.90653907 0.831970624 0.86064371 0.868340362 407649008 atzb Nocardia brasiliensis ATCC 700358 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia brasiliensis; 0.84107761 0.89042563 0.875972972 0.86608559 0.865951621 0.907051244 0.86791825 0.877695831 0.836176114 0.916553073 0.878545048 0.905539332 0.858884956 0.914595496 0.877683827 0.876784638 0.894102759 0.916919674 119391529 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.940021235 0.944053023 0.911470678 0.990622492 0.926116148 0.927935316 0.929841482 0.926964537 0.95493429 0.907187329 0.916304622 0.925668154 0.896161447 0.899536792 0.818735697 0.878727163 0.939356555 0.982115906 218672159 acetylglucosaminidase Rhizobium etli GR56 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 0.87401004 0.826369888 0.876309746 0.913655069 0.892600945 0.843776803 0.903006666 0.915290959 0.9237663 0.856867185 0.867914223 0.911275547 0.855104011 0.826653383 0.836195389 0.815226267 0.893818738 0.875779778 349688384 vana Gluconacetobacter oboediens 174Bp2 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter oboediens; 0.807678902 0.851024955 288351281 ben_bcla Frankia sp. EUN1f virulence NA NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 0.943801597 1.01983789 0.93297642 0.969575041 0.968595978 0.992235117 0.932714843 0.927717423 0.972634103 0.971480114 0.905057422 0.956087308 0.949909955 0.950489925 0.891737102 0.948629895 0.961487724 0.926158056 117621087 cysI Aeromonas hydrophila subsp. hydrophila ATCC 7966 Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas hydrophila; 0.957848331 0.974753 0.952229199 0.980449569 0.973178772 0.982154178 0.926977868 0.941551453 0.958412493 0.954045211 0.954663687 0.96808666 0.942773679 0.896446992 0.892135086 0.901366721 0.975351611 0.961572632 139003464 nifh uncultured nitrogen-fixing bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.783178949 0.813140407 0.782489525 0.781632081 1.001521102 170750600 exaa(moxf) Methylobacterium radiotolerans JCM 2831 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium radiotolerans; 0.899159288 0.904802695 0.856861789 0.836861442 0.83405652 0.839431181 0.866159924 0.878165692 374656415 catb Saccharomonospora marina XMU15 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora marina; 0.880472396 0.918492281 0.828016305 0.879581246 0.857676289 0.878991858 0.833074565 0.85220517 0.849714102 0.880696577 0.840642597 0.870371088 0.868028081 0.907697305 13423948 pcag Caulobacter crescentus CB15 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter vibrioides; 1.403874495 1.374108523 1.356825254 1.374386674 1.359566087 1.387391639 1.341549604 1.346773156 1.360957372 1.337538553 1.358166159 1.362240021 1.348592431 1.318821975 1.308604889 1.343493352 1.401469745 1.330314317 378402132 TIM Rhodospirillum photometricum DSM 122 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum photometricum; 0.935400668 0.950245509 0.981431724 0.970426706 0.968549157 0.987688125 0.888803824 0.883105942 0.906282861 0.924899504 0.953687753 0.977650552 0.922066261 0.94730306 0.889222804 0.955507171 0.938776815 0.976636228 73763046 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.2500425 1.231963593 1.240995219 1.251743341 1.21993629 1.268181355 1.216403341 1.252306404 1.227206461 1.223184439 1.226551058 1.228233435 1.188504618 1.206223213 1.189072768 1.240661863 1.223795777 1.244754422 119407800 nitrate_reductase Neosartorya fischeri NRRL 181 Nitrogen N Assimilation NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 0.980713233 0.882295451 0.882582953 0.769271508 0.997064336 0.807992774 0.878452762 0.854630567 1.05516726 0.861752619 386289531 ppx gamma proteobacterium BDW918 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 0.98112356 0.928457528 0.963836475 0.94596598 0.933283893 0.85801707 0.835667782 0.919337735 0.948294607 0.909991255 0.919502427 0.945928828 0.895151974 0.919087566 0.923204393 0.887072041 0.93940649 0.966848541 86570964 amyA Rhodopseudomonas palustris HaA2 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 1.107751445 1.065701583 1.061307046 1.058543566 1.021958609 1.035030971 1.017432597 0.982803139 1.114366786 1.018542416 1.051908032 1.028805068 0.99295302 0.963270162 0.992035002 0.983233947 1.081662039 1.05021303 119401344 oxdb Aspergillus clavatus NRRL 1 Organic Remediation Aromatics Nitoaromatics superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 0.798959541 0.801405281 0.812982566 0.785579729 0.81826894 0.810321558 0.82271804 343479940 bmo Arthrobacter sp. PG-3-2 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 0.787998449 0.830549313 387876417 amyA Mycobacterium sp. MOTT36Y Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 1.083170702 1.065577341 1.048764205 1.071841941 1.044620316 1.068316185 1.046156029 1.063002589 1.035612867 1.052089297 1.035452987 1.067308931 1.034461426 0.998207178 0.968764322 1.021891231 1.056817612 1.084416212 389694808 ppx Microvirga sp. WSM3557 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Microvirga; 1.08940318 1.108073525 1.087094806 1.1323766 1.132640417 1.107828768 1.097500637 1.093391493 1.099154521 1.13935076 1.108523927 1.132042785 1.095538617 1.089049707 1.068594926 1.100488151 1.118941931 1.10443478 149279875 exochitinase Pedobacter sp. BAL39 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Pedobacter; 0.925530649 0.891020738 0.891370991 0.937143614 0.956746705 0.920821368 0.903857417 0.926864223 0.954467055 0.956316214 1.010286705 0.972744223 0.902882022 0.898467316 0.856287749 0.905924775 1.00325741 0.872883243 311278267 cysJ Enterobacter cloacae SCF1 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter cloacae; 1.074793404 1.053796806 1.045209431 1.068366819 1.034669763 1.055977039 0.98606796 1.017368089 1.025300891 1.020011646 1.013852014 1.013715276 1.010781922 1.008516877 0.96432692 1.055470742 1.030559027 1.023351583 2746667 ppk Neisseria meningitidis Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria; 0.790779568 0.851922902 0.816628168 0.840086532 0.825010216 0.816144277 0.855953236 0.86013962 0.850241479 0.802236623 0.876394603 295794764 pgk Thiomonas intermedia K12 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Thiomonas;species:Thiomonas intermedia; 0.864581778 0.843802274 0.830077629 0.849540522 0.808972147 0.848146785 0.844703389 0.877622194 0.886614828 0.840614527 0.813255766 0.842073781 0.80698438 0.837369231 0.819412027 0.850940509 0.83675178 124259005 chnb Methylibium petroleiphilum PM1 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 1.054735047 1.067567972 1.043073505 1.086015376 1.066951499 1.058168555 1.048426884 1.077798201 1.089014683 1.032150376 1.042823648 1.052732485 1.039513606 0.987908381 1.028874564 1.014524596 1.080248294 1.077404477 302681811 Glucose_oxidase_fungi Schizophyllum commune H4-8 Carbon Cycling Carbon degradation glucose superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 1.147140984 1.081572156 1.067572312 1.133681194 1.075193851 1.048145603 1.083199833 1.125848309 1.108964462 1.051660333 1.04570387 1.062599077 1.067591655 0.997185065 1.012133461 1.064846301 1.094919676 1.063796541 18034317 dsrB Syntrophobacter wolinii Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophobacteraceae;genus:Syntrophobacter; 1.224392796 1.214740968 1.187045365 1.226858616 1.231974594 1.268428348 1.222183224 1.189600292 1.218349491 1.225573837 1.252008348 1.239871335 1.250466111 1.21057719 1.224761001 1.241629412 1.231922103 1.210111568 371951379 ccmL Singulisphaera acidiphila DSM 18658 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Singulisphaera;species:Singulisphaera acidiphila; 0.924280004 0.987007458 0.943761893 0.919138423 0.886782236 0.925133873 0.881014606 0.903590095 0.927516142 0.916310667 0.967409645 0.966872471 0.865003049 0.834892097 0.934868663 0.919810088 0.88830648 0.927782624 384093136 mannanase Paenibacillus mucilaginosus K02 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 1.104633122 1.038837778 1.009692071 1.0927661 1.024443379 1.002500347 1.000914324 1.053619714 1.067830585 1.029572527 1.018658633 1.091335065 0.996715883 1.032013945 0.99718354 1.020198093 1.052744189 1.038544658 325662562 amyA Lachnospiraceae bacterium 4_1_37FAA Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae; 0.819327684 0.946842781 221169566 xylg Burkholderia multivorans CGD1 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 1.082197474 1.063854762 1.087817073 1.065268826 1.074844476 1.075902975 1.067531507 1.090630179 1.059478183 1.067754474 1.033083964 1.03594041 1.038201647 1.009239755 1.02480139 1.027298407 1.073820997 1.072405579 209536735 cellobiase Rhizobium leguminosarum bv. trifolii WSM2304 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 0.817902472 0.831924639 0.834748868 0.804902237 0.798067522 0.848873631 0.839459257 0.796075783 0.821580634 401676417 mdlc Enterobacter sp. SST3 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 1.344266188 1.328641602 1.330414601 1.342097846 1.308831699 1.347355175 1.319881264 1.346853853 1.304756936 1.321890441 1.30783952 1.34832466 1.288069504 1.300944375 1.263154523 1.308219394 1.315421608 1.308613 189188560 endochitinase Pyrenophora tritici-repentis Pt-1C-BFP Carbon Cycling Carbon degradation Chitin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 0.85546062 0.789242631 0.799550212 0.81151727 0.811262394 0.820429301 0.838797256 300643446 mdlb Pseudomonas resinovorans Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.864571274 0.91217459 0.843474914 0.917310306 0.830374712 0.880792984 0.910664016 0.856868849 0.893457984 0.879837295 0.810520987 0.920128129 0.884038732 0.911356518 119525323 acetylglucosaminidase Thermofilum pendens Hrk 5 Carbon Cycling Carbon degradation Chitin superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermofilaceae;genus:Thermofilum;species:Thermofilum pendens; 0.916208954 0.917828702 0.909872456 0.942293559 0.856462164 0.900563724 0.876199425 0.869289753 0.892963191 0.926243474 0.869435404 0.878674548 0.837541242 0.882382522 0.856102954 0.829546026 0.925438532 0.913640427 291301232 terc Stackebrandtia nassauensis DSM 44728 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Glycomycetaceae;genus:Stackebrandtia;species:Stackebrandtia nassauensis; 1.260363002 1.251384959 1.206945653 1.235242001 1.20318538 1.25783959 1.165231503 1.21810682 1.203129911 1.207707601 1.225297615 1.21585014 1.18802399 1.217154866 1.152942786 1.209030918 1.241319795 1.209523645 54023045 amyA Nocardia farcinica IFM 10152 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 1.524145742 1.471838586 1.470180995 1.492038755 1.442563468 1.500168885 1.44180711 1.45196945 1.478054211 1.475886249 1.469821243 1.48018097 1.429690585 1.428867814 1.411715524 1.4510683 1.502583646 1.46501782 365274412 amyA Bradyrhizobium sp. ORS 285 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.932251228 0.942241604 0.931104498 0.955110893 0.915164238 0.927960194 0.927255583 0.935303084 0.966435883 0.927771248 0.89287223 0.911550713 0.862415918 0.948845914 0.843291326 0.908869751 0.873316428 0.914429544 295681094 cellobiase Burkholderia sp. CCGE1002 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 1.480676619 1.450707015 1.449169624 1.464782694 1.428693856 1.486673547 1.440940521 1.442879613 1.441550838 1.437928572 1.449989346 1.459652833 1.408721215 1.403086834 1.410589802 1.438395067 1.448226715 1.4253009 119225958 catechol_b uncultured bacterium Organic Remediation Aromatics Other aromatics superkingdom:Bacteria; 0.878835457 0.9179322 0.89676542 0.86822569 0.794169192 0.860789922 0.850171724 0.854177746 0.878400178 0.897957993 0.828697417 0.894292172 0.824430255 0.841120337 0.825458068 0.902717202 0.906674149 154253605 TIM Parvibaculum lavamentivorans DS-1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhodobiaceae;genus:Parvibaculum;species:Parvibaculum lavamentivorans; 0.834729007 0.903786555 0.873987565 0.87938188 0.873013501 0.890077626 0.89565471 0.86553112 0.877846182 0.885785988 0.86714237 0.847690425 0.833379407 0.803198318 0.847663016 0.91794224 0.891425186 116067563 CsoS1_CcmK Synechococcus sp. RS9916 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 0.954821107 0.881091009 0.911293522 0.926904473 0.912190806 0.904836794 0.930947119 0.938359016 0.913600847 0.917163952 0.929930238 0.947900296 0.857688465 0.867903896 0.880095587 0.864708108 0.959513059 0.947132267 376396403 terc Klebsiella oxytoca 10-5250 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella oxytoca; 0.878753542 0.857277935 0.858303486 0.790353599 0.816708077 0.841598792 0.822508096 0.859207357 0.847074275 0.880505273 0.865487387 358237744 amyA Gordonia amarae NBRC 15530 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia amarae; 0.886347269 0.899337504 0.920016087 0.913047485 0.911601287 0.894212197 0.898912708 0.911966251 0.91789859 0.900692969 0.919939467 0.892306656 0.831418531 0.817799426 0.830189362 0.853512576 0.895960107 0.883244114 302415260 pec_Cdeg Verticillium albo-atrum VaMs.102 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticilium;species:Verticillium albo-atrum; 1.00928733 0.921978131 0.978043674 0.929706962 0.945860415 0.913150489 0.899382566 0.911028511 0.927526868 0.8779614 0.956076386 0.901886838 0.890818702 0.868042761 0.893811671 0.854236566 0.920832747 0.890673477 268310717 cutinase Thermomonospora curvata DSM 43183 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Thermomonosporaceae;genus:Thermomonospora;species:Thermomonospora curvata; 0.830009458 0.950241624 0.857867217 0.930653238 0.919198579 0.922049941 0.874489428 0.853621153 0.884012723 0.9113735 0.86060251 0.873893263 0.904017182 0.888151667 0.876862764 0.917561014 0.903372508 0.935711795 229853077 cellobiase Streptosporangium roseum DSM 43021 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 0.847755501 0.793362911 0.791313019 0.815146786 0.894809738 0.813104072 0.778740063 0.79545418 0.812569873 386713573 amyA Halobacillus halophilus DSM 2266 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Halobacillus;species:Halobacillus halophilus; 0.886067621 0.866001238 0.828735434 0.880307842 0.815228887 0.861631936 0.878394558 0.822132245 0.81460378 0.889880063 0.857385407 288568946 amyA Dethiosulfovibrio peptidovorans DSM 11002 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Synergistetes;class:Synergistia;order:Synergistales;family:Synergistaceae;genus:Dethiosulfovibrio;species:Dethiosulfovibrio peptidovorans; 0.830754784 0.817148323 0.804941611 0.801900359 0.829738867 0.817074419 0.830386972 118434943 mult_ring_12DiOx Stappia aggregata IAM 12614 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 0.872584823 0.859246599 0.922630842 0.865294109 0.858777353 0.841107299 0.817623844 0.844506288 0.878617962 0.842770646 0.865731339 0.84467093 0.805614935 0.802732396 0.812468744 0.88466553 0.876610021 76875975 xylj Pseudoalteromonas haloplanktis TAC125 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas haloplanktis; 1.025806231 1.003012573 1.032210609 1.016177936 1.03644063 0.944902937 0.973991885 1.0710834 0.913165788 0.918993199 1.046363121 0.943082688 1.029955108 0.820826076 1.000848762 1.035466438 1.026830168 50120536 arsc Pectobacterium atrosepticum SCRI1043 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium atrosepticum; 0.992968397 0.994538633 0.983226513 0.994002411 0.951070193 0.946909495 0.988612703 0.939815088 0.978824928 0.969667038 0.960780781 0.969603983 0.931584875 0.864303632 0.913444035 0.919334135 0.9804022 0.969139707 385701760 amyA Bifidobacterium animalis subsp. animalis ATCC 25527 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium animalis; 1.125877193 1.162063709 1.082511327 1.121888508 1.122588921 1.111848103 1.089658047 1.049920371 1.057799373 1.090709296 1.049681767 1.137541815 1.084918603 1.072755038 0.950270774 1.060919856 1.135327949 1.109913474 86751203 phn Rhodopseudomonas palustris HaA2 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 0.820887558 0.801489256 0.823938191 0.805513004 114777120 ppx Mariprofundus ferrooxydans PV-1 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Zetaproteobacteria;order:Mariprofundales;family:Mariprofundaceae;genus:Mariprofundus;species:Mariprofundus ferrooxydans; 0.863691828 0.803025618 0.837130784 0.814514524 0.796446419 0.890648047 0.779089787 0.829855309 0.88148047 256731042 rgl Nectria haematococca mpVI 77-13-4 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Fusarium;species:Nectria haematococca; 1.113220702 1.117216152 1.089150399 1.05996915 1.075929926 1.157927307 1.071092558 1.063045171 1.063224775 1.15923604 1.083161899 1.113256237 1.092401222 1.149019996 1.040701757 1.097100637 1.099038315 1.098539428 292631693 ppk Bacteroides ovatus SD CMC 3f Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides ovatus; 0.861166822 0.969579243 0.954583892 0.794255401 0.937462948 0.961902022 0.904172943 0.896132216 0.918648941 1.007308701 0.952314819 0.831068253 219126721 nitrate_reductase Phaeodactylum tricornutum CCAP 1055/1 Nitrogen N Assimilation NA superkingdom:Eukaryota;phylum:Bacillariophyta;class:Bacillariophyceae;order:Naviculales;family:Phaeodactylaceae;genus:Phaeodactylum;species:Phaeodactylum tricornutum; 1.134210089 0.98302062 1.080512522 1.073138454 1.191694093 1.162544595 1.162427262 0.902982126 1.143223757 1.068029264 1.094169335 1.104884432 1.14107979 1.196107886 1.108616313 1.055201929 1.082030374 373234437 acetylglucosaminidase Niabella soli DSM 19437 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;genus:Niabella;species:Niabella soli; 0.768331344 0.797741354 0.818230886 0.796446527 0.795475273 0.817861058 119392304 protease_serine_fungi Dactylella shizishanna Carbon Cycling Carbon degradation protein superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Orbiliomycetes;order:Orbiliales;family:Orbiliaceae;genus:Dactylella; 1.015428267 1.011759434 0.982564311 0.985792009 0.990648194 0.99721318 0.986338707 0.970557743 0.993356955 0.971708947 0.958751386 0.982534025 0.966143276 0.953304248 0.951592213 0.936407849 1.011931521 0.996876772 89241998 rubisco Symploca atlantica PCC 8002 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Symploca;species:Symploca atlantica; 1.293170606 1.244113118 1.276828524 1.302906615 1.257487938 1.314361456 1.266453427 1.286361545 1.281624953 1.249172125 1.267306582 1.260507512 1.241097371 1.243517578 1.309778488 1.262982722 1.318620104 1.272187509 308213091 alkb uncultured bacterium Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria; 0.960358229 0.940584628 0.959663131 0.965785173 0.937237669 0.933530871 0.906695423 0.93799329 0.946345785 0.941335924 0.919635085 0.960320101 0.950951249 0.915719965 0.888063218 0.928439435 0.989516939 0.950653358 88702209 arylest Congregibacter litoralis KT71 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Congregibacter;species:Congregibacter litoralis; 1.135445977 1.164403902 1.121861537 1.146860398 1.137323461 1.160450674 1.121009055 1.129141181 1.101281076 1.125347731 1.12545945 1.122898192 1.111548214 1.130947404 1.108853485 1.124647198 1.137624057 1.156539127 187924677 ben_bcla Burkholderia phytofirmans PsJN virulence NA NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 1.053371955 1.039926921 1.072477386 1.081212972 1.02571319 1.063473707 1.008183497 1.067085578 1.064397147 1.058631947 1.032795291 1.079812439 1.050434349 1.004507754 1.016044147 0.977901677 1.087670078 1.017475828 84664691 FBPase Rhodobacterales bacterium HTCC2654 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Maritimibacter;species:Maritimibacter alkaliphilus; 0.803119066 0.814339305 0.870897613 0.851894863 0.824517274 0.807385582 0.825451034 0.844822349 0.834789439 154159571 tktA Xanthobacter autotrophicus Py2 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 1.185261854 1.156387165 1.167883299 1.16236602 1.15558435 1.159145907 1.140116442 1.163094174 1.248124236 1.124055414 1.128709218 1.177228181 1.093799297 1.121495702 1.169856308 1.16476761 1.106820959 1.151784428 160346285 aoxb Burkholderia multivorans ATCC 17616 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 1.017909735 1.056282529 1.044320941 1.108829682 1.047094003 1.038205832 1.045597 1.029417146 1.035604892 1.06382902 1.027294523 1.103874833 1.046633411 1.035155132 1.003503205 1.032631899 1.046007096 1.008335312 333445044 ppx Methyloversatilis universalis FAM5 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Methyloversatilis;species:Methyloversatilis universalis; 0.931279978 0.935515577 0.883818181 0.935973357 0.881811097 0.884228625 0.877486463 0.927322209 0.924160204 0.864265894 0.909020812 0.954367639 0.866147018 0.860222328 0.8994387 0.909717383 0.940495032 0.845774135 227069681 nira uncultured archaeon Nitrogen Assimilatory N reduction NA superkingdom:Archaea; 1.117657869 1.116470846 1.087475115 1.129828293 1.114136136 1.119004536 1.07487354 1.126137291 1.091758 1.066333853 1.09488124 1.10163817 1.095796706 1.063660423 1.094328227 1.076223328 1.112513559 1.081120924 302830888 mg_chelatase Volvox carteri f. nagariensis Secondary metabolism Pigments Chlorophyll superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Chlorophyceae;order:Chlamydomonadales;family:Volvocaceae;genus:Volvox;species:Volvox carteri; 0.899375917 0.887224748 0.912496241 0.943973183 0.921668467 0.902813342 0.93921625 0.924492663 0.917565272 0.926951916 0.851231756 0.865795225 0.85882091 0.878265979 0.871579852 0.932857513 187920811 tktA Burkholderia phytofirmans PsJN Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 1.002996759 0.989732539 0.947496679 1.02294665 0.957657552 1.013697494 0.980393352 1.002479166 1.018347452 0.987921729 0.938300207 0.974155849 0.910960086 0.927881081 0.862739714 0.939610865 0.953884998 0.986640726 63081888 nosz unidentified bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.840095787 0.834321659 0.80556064 0.833086232 0.785097433 0.8153089 0.823196354 0.83874494 0.84568175 212171502 alkb uncultured bacterium Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria; 0.960517247 1.010847883 0.93163632 0.969493326 0.94260293 1.011253957 0.929966213 0.991996026 0.956301947 1.00497623 0.939728064 0.980753597 0.952633848 0.946302745 0.949475296 0.988054752 0.932805858 0.964265808 324099790 alginase Pseudomonas sp. TJI-51 Carbon Cycling Carbon degradation Alginate superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.893613167 0.945648007 0.956341044 0.965533251 0.947343514 1.008044619 0.910330871 0.946407683 1.001527456 0.99591881 0.991279356 0.975082272 0.995061968 0.990681015 0.929317268 0.973457927 0.91613739 0.98397878 291296492 ben_bcla Meiothermus ruber DSM 1279 virulence NA NA superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Meiothermus;species:Meiothermus ruber; 0.83225059 0.819142287 0.879246764 0.899731843 0.915528063 0.885726442 0.860340247 0.925546601 0.900240129 0.882565126 0.892193482 0.853857765 0.862929016 0.837798806 0.827920991 0.861881747 0.835682591 347751915 amyA Bacillus coagulans 36D1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus coagulans; 0.905282513 0.949744727 0.867669751 0.976269986 0.925318969 0.983459061 0.88874281 0.893827155 0.906259967 0.922696777 0.846429097 0.90282456 0.901112801 0.848015059 0.890508727 0.913047016 0.955417591 0.97474007 169175729 ara Arthrobacter chlorophenolicus A6 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 1.213822983 1.180684273 1.199004348 1.220768229 1.194139671 1.196853015 1.229916262 1.22599656 1.187231588 1.156243054 1.196538106 1.222697146 1.139327151 1.147507911 1.138418605 1.142450128 1.197209599 1.169447223 229377976 FBPase Oxalobacter formigenes HOxBLS Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Oxalobacter;species:Oxalobacter formigenes; 1.110016834 1.145363684 1.138550429 1.183529309 1.168634384 1.168922164 1.182820185 1.176857981 1.175964487 1.135174645 1.160746621 1.176866423 1.16739177 1.106153745 1.130856293 1.137290045 1.143371544 1.136659041 334104079 poba Sphingobium chlorophenolicum L-1 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium;species:Sphingobium chlorophenolicum; 0.899499053 0.899150477 0.887776638 0.929762386 0.903244587 0.885990894 0.868957623 0.821854068 0.914299351 0.795546819 0.84928881 0.817516743 0.928438246 0.910617443 77383205 mdld Pseudomonas fluorescens Pf0-1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 1.161536879 1.124032773 1.106923155 1.16335247 1.102142615 1.119776905 1.091513741 1.111231752 1.15269081 1.113599078 1.109679619 1.147016003 1.104629469 1.093229545 1.085937345 1.10342189 1.126675111 1.159536816 74038408 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.362895379 1.332151665 1.312535924 1.349848494 1.340937597 1.341721945 1.34086179 1.37653053 1.344349656 1.332899058 1.315997983 1.348516496 1.30211973 1.295483427 1.309467904 1.324593005 1.325698458 1.311799278 299795104 mhpa Amycolatopsis mediterranei U32 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 1.024646061 1.001369117 0.957871641 1.017184244 0.917765961 0.97014231 0.983231086 1.014163169 0.973819357 1.002149806 0.901227455 0.975487382 0.888410183 0.96537166 0.880769277 0.926159509 1.013422215 1.007418747 156857677 aps_apra uncultured bacterium Sulfur adenylylsulfate reductase NA superkingdom:Bacteria; 0.852547484 0.813060045 0.878358931 0.841576234 0.85897773 0.824807774 0.817748219 0.81707103 0.838997722 0.884018816 40253074 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.973840118 0.855892245 0.922408922 0.953635736 0.942194369 0.932433419 0.936840005 0.924132765 0.936333747 0.93519541 0.928665272 0.989655299 0.887372698 0.898715056 0.820566677 0.910433587 0.950252439 0.894833508 365329538 phn Bradyrhizobium sp. STM 3809 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 1.233434089 1.158120963 1.15891862 1.196938051 1.171816186 1.1857833 1.157767022 1.210196273 1.203542535 1.161031254 1.158507153 1.181745195 1.128066954 1.112276891 1.118782118 1.14801242 1.222129739 1.172709502 333488469 amyA Mycobacterium sp. JDM601 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 0.820739495 0.866906515 0.853361065 0.879529894 0.853226424 0.850299515 0.811309259 0.803220947 0.843536367 0.84617185 0.82571875 0.829091863 0.839895158 0.830363415 0.857229794 0.871803016 337276055 nifh Acetonema longum DSM 6540 Nitrogen Nitrogen fixation NA superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Acetonema;species:Acetonema longum; 0.947436707 0.985934539 0.9147218 0.979492959 0.929811235 0.941965806 0.898366623 0.936177138 0.958121673 0.95510383 0.922799833 0.967570898 0.955258734 0.962119148 0.910132152 0.974526639 0.978236942 0.938770234 422314229 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.910341157 0.888537222 0.874404007 0.869635875 0.901237858 0.872090868 0.911984015 0.939476599 0.892017205 0.876349227 0.923283777 0.877230393 0.877773234 0.874491669 149201938 GAPDH_Calvin Roseovarius sp. TM1035 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 1.208885447 1.168528972 1.18502437 1.199848568 1.190428081 1.168891238 1.190983952 1.204960668 1.196300396 1.163125336 1.172460425 1.199547868 1.138603884 1.128775513 1.146681072 1.169371527 1.227559981 1.195983461 363416202 catb Acidovorax sp. NO-1 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 0.917605396 0.881538389 0.864624293 0.846874476 0.850164833 0.836986446 0.861547958 0.811936215 0.813441602 0.828356745 0.82428744 0.915902224 0.873227354 291088954 ppx Edwardsiella tarda ATCC 23685 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Edwardsiella;species:Edwardsiella tarda; 0.786991048 0.818360712 0.828085424 0.894919501 0.817295305 0.849552891 0.809791341 0.802930124 0.859695203 0.809172188 0.824850025 0.862110551 0.799340723 0.914635542 165880037 exoglucanase uncultured fungus Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi; 0.916113008 0.979725248 0.964344696 0.954917627 0.945217367 0.954598472 0.920032651 0.894863352 0.851333688 0.918612079 0.850675474 0.899097298 0.905591913 0.89273964 0.839789695 0.877834963 0.968943904 0.948452436 145553716 mcra uncultured methanogenic archaeon Carbon Cycling Methane Methanogenesis superkingdom:Archaea;phylum:Euryarchaeota; 0.780621585 0.894244335 0.846441841 0.815056511 0.800538872 0.841135306 0.849321938 0.786511136 0.836619818 0.839875438 108765660 pcag Rubrobacter xylanophilus DSM 9941 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Rubrobacterales;family:Rubrobacteraceae;genus:Rubrobacter;species:Rubrobacter xylanophilus; 0.853878351 0.968116813 0.897657121 0.936711595 0.911685862 0.952916731 0.871130181 0.904565765 0.843743716 0.933611264 0.915927874 0.910666205 0.933478433 0.889407374 0.86904254 0.928540221 0.925214029 0.956623693 22298490 CsoS1_CcmK Thermosynechococcus elongatus BP-1 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Thermosynechococcus;species:Thermosynechococcus elongatus; 0.959457164 0.878145224 0.882160157 0.893804236 0.874444503 0.862512378 0.894565702 0.944255551 0.892887963 0.904056452 0.912163858 0.910996911 0.925883514 284504810 ara Penicillium funiculosum Carbon Cycling Carbon degradation Hemicellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces; 1.17164194 1.17899695 1.146722552 1.20078297 1.175291349 1.18427763 1.147327389 1.158850391 1.146375427 1.144425233 1.15047134 1.202726975 1.141197359 1.134388017 1.122012923 1.137550898 1.194308797 1.136531791 297161521 RgaE Streptomyces bingchenggensis BCW-1 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces bingchenggensis; 1.075952714 1.119474839 1.067435835 1.090079211 1.031713522 1.042336797 1.012444429 1.068575833 1.072396831 1.039176627 1.03840461 1.106504598 1.049382082 1.038046475 1.031830266 1.051155417 1.076826975 1.065401246 195931869 catechol Gordonia amicalis Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia; 1.137532621 1.161483035 1.140825338 1.141813052 1.155924819 1.183810546 1.133709279 1.104706584 1.119742543 1.112896205 1.109786456 1.14278948 1.134887901 1.137053134 1.147618223 1.123957325 1.169741888 1.176070229 354805769 rubisco uncultured bacterium Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria; 0.983905291 0.972057096 0.942059412 1.018578286 0.94836916 0.99871581 1.000752793 1.027570535 1.014433134 0.988490412 0.958243219 1.011277773 0.957214609 0.96019825 0.926348861 0.938065665 1.039648395 0.974847436 336116531 amyA Microlunatus phosphovorus NM-1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Microlunatus;species:Microlunatus phosphovorus; 0.840331876 0.872155961 0.802377698 0.833311858 0.845576789 0.884509741 0.861822837 0.824265974 0.846784155 0.864099892 0.770266116 0.904532266 283484365 glucoamylase Marssonina brunnea f. sp. 'multigermtubi' Carbon Cycling Carbon degradation Starch superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Dermateaceae;genus:Marssonina;species:Marssonina brunnea; 1.071241003 1.052210824 1.021101094 1.038572647 1.007838109 1.037721624 0.993978709 0.993627801 1.032887521 1.001392186 0.991669177 1.020096809 0.997377918 0.999074311 0.986270503 1.000926172 1.070969854 1.062675734 238884501 amyA Selenomonas flueggei ATCC 43531 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas flueggei; 0.947124437 0.992274728 0.939254016 0.943197594 0.982468287 0.980318937 0.937356601 0.922144342 0.963202951 1.00730868 0.95527414 0.977065515 0.976577402 0.963289608 0.954488783 0.971787371 0.973636024 0.987200431 330957141 ppx Pseudomonas syringae pv. maculicola str. ES4326 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 0.878590025 0.871078025 0.84210732 0.850734919 0.863353561 0.901073124 0.855579501 0.80869069 0.928514399 0.873130672 0.879502817 0.833081498 0.933956489 0.885861452 0.901042591 0.834765106 0.912365451 74317327 dsra Thiobacillus denitrificans ATCC 25259 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus;species:Thiobacillus denitrificans; 0.904741073 0.884405505 0.921607337 0.931890827 0.909245642 0.97097282 0.957453286 0.952773454 0.931076673 0.9025299 0.905470477 0.887166907 0.900142778 0.883655522 0.873437788 0.940695699 0.865921817 261878783 pectinase (pectate_lyase) Prevotella bergensis DSM 17361 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella bergensis; 1.029221404 1.051851735 1.041824966 1.040209363 1.047066125 1.063149276 1.059607623 1.003943884 1.048787602 0.987365659 0.986377885 0.994992241 0.990239344 1.004095449 0.932919865 0.993368802 1.070050887 1.054725541 29125884 nosz uncultured soil bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.832079515 0.834138169 0.801280236 0.813332822 0.835666008 0.840113242 0.866881184 93357964 nbac Ralstonia metallidurans CH34 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 0.894315644 0.992037192 0.850655205 0.907597144 0.89614654 0.839602966 0.880857155 0.892323679 0.879683634 0.81305526 0.847196769 0.817012137 0.898513215 0.891578881 391880284 amyA Parascardovia denticolens IPLA 20019 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Parascardovia;species:Parascardovia denticolens; 0.921867942 0.92889647 0.902823007 0.862303719 0.946672917 0.938069857 0.85504226 0.936471441 0.890783356 0.87820364 0.936129848 0.898018601 0.934409543 0.917309163 0.865849635 0.886457911 0.853958931 0.920137184 384084022 PRI Acidithiobacillus thiooxidans ATCC 19377 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus thiooxidans; 0.946409911 0.918180774 0.933962678 0.913613216 0.993054702 0.959530666 0.938307949 0.920907004 0.933448918 0.947963503 0.935217692 0.899374546 0.902740047 0.935314398 0.926330397 0.881528451 0.913021186 0.938774488 327312714 amyA Prevotella denticola F0289 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella denticola; 1.225861243 1.141781684 1.204914299 1.153010783 1.136833763 1.166773133 1.098145395 1.088639084 1.163488995 1.173854663 1.199788402 1.168188251 1.173730844 1.173124838 1.149869272 1.137244359 1.172896364 1.182628344 73539512 bphd Ralstonia eutropha JMP134 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 1.179864764 1.272794033 1.164234716 1.223215986 1.158580095 1.139638473 1.16038649 1.16480816 1.185374073 1.158754725 1.156606907 1.197702884 1.11312733 1.134760871 1.10504492 1.106192548 1.175424362 1.153550881 192290196 mdlc Rhodopseudomonas palustris TIE-1 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 1.037928809 0.966790594 0.998040103 1.058082988 1.002577495 0.9870069 0.995962258 1.001314957 1.007474695 0.98328059 0.958120978 1.000076429 0.953206947 0.924393228 0.964630623 0.95793369 1.037773946 0.983560995 53758880 nasa Methylococcus capsulatus str. Bath Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylococcus;species:Methylococcus capsulatus; 1.141438888 1.129785136 1.087982621 1.126006556 1.045858549 1.118158003 1.044233095 1.088260152 1.112476276 1.100096293 1.101630984 1.087146256 1.0256417 1.074744329 1.017159007 1.074802501 1.138284599 1.13466094 88643378 dsrB uncultured prokaryote Sulfur sulfite reduction NA 0.875445981 0.834611281 0.879968032 0.82499258 0.857881025 0.851562525 0.847088931 0.885258116 0.870823894 0.888892078 0.818593654 0.836083048 0.819150292 0.936538361 0.814609248 0.820738346 0.875196938 0.887301936 126729045 FBPase Sagittula stellata E-37 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 0.799991485 0.824046366 0.830536274 0.857972803 0.825614881 0.896250489 0.847053691 404267229 exaa(moxf) Bradyrhizobium sp. CCGE-LA001 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.939482176 0.924496657 0.925677034 0.929711656 0.84096023 0.912744998 0.860891177 0.921659751 0.920044942 0.914570568 0.898686819 0.907012556 0.845692485 0.906745042 0.79528117 0.833528535 0.943510517 0.922077139 262082332 pcpe Haliangium ochraceum DSM 14365 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Kofleriaceae;genus:Haliangium;species:Haliangium ochraceum; 0.970480271 1.007736103 0.959083599 0.970344807 0.959187908 0.977751604 0.96652723 0.96978439 0.942526957 0.93468886 0.903507162 0.936915294 0.838422607 0.891686279 0.847982481 0.871693571 0.940079787 0.965288879 119391473 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.936527884 1.005144011 1.003888558 0.905566641 0.966008852 1.041592904 0.933108742 0.866047824 0.880367229 1.001058997 0.916182835 0.92641197 0.930441894 1.013777464 1.133268383 0.93677344 1.039953886 1.063345891 211957059 rd Pseudovibrio sp. JE062 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 0.91240657 0.887587738 0.817464067 0.941410942 0.861041555 0.846505626 0.881462029 0.897465442 0.867664779 0.918396348 0.83591584 0.85415591 0.847423434 0.89367636 0.861968464 126250025 mdh_DiC4HB Pyrobaculum calidifontis JCM 11548 Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum calidifontis; 1.148521629 1.172661925 1.157359966 1.169868171 1.156653415 1.178940883 1.153445839 1.170555231 1.163489599 1.156437998 1.150524766 1.141450401 1.134534196 1.082709406 1.0819706 1.119379682 1.163992421 1.141689893 119512553 amyA Nodularia spumigena CCY9414 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nodularia;species:Nodularia spumigena; 1.033744018 0.948309031 0.917102276 0.94960178 0.946017629 0.981542269 0.932601109 0.897219454 0.879978447 0.947342463 0.948684082 0.927192468 0.935009489 0.981580633 0.873764693 0.949806012 0.951715667 0.904433669 339021066 PRI Acetobacter tropicalis NBRC 101654 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acetobacter;species:Acetobacter tropicalis; 0.816831969 0.795562874 0.813612195 0.825769669 0.811282584 0.851723075 0.850394927 0.806844357 0.830113999 0.802769802 384046004 B_lactamase_A Bacillus megaterium WSH-002 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus megaterium; 1.149867599 1.102301456 1.077752745 1.100343112 1.073237107 1.075163586 1.076969084 1.078778137 1.086186881 1.088422603 1.092862558 1.105613468 1.040015108 1.044953909 0.989442378 1.051272403 1.029874267 1.055860018 297164326 Sir Truepera radiovictrix DSM 17093 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Trueperaceae;genus:Truepera;species:Truepera radiovictrix; 1.339368895 1.286267983 1.302507951 1.266270482 1.337970881 1.251221146 1.258870501 1.288485491 1.265050762 1.260034412 1.254676229 1.282721918 1.240438332 1.280312519 1.300933201 15788869 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.788729023 0.791488169 0.917958976 0.833944632 0.813149615 0.846785018 0.817937159 0.875095268 33594989 one_ring_12diox Bordetella parapertussis 12822 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella parapertussis; 0.846266664 0.853597964 0.810467385 0.807788103 0.860221044 0.815304422 269786088 chitinase Sphaerobacter thermophilus DSM 20745 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Chloroflexi;class:Thermomicrobia;order:Sphaerobacterales;family:Sphaerobacteraceae;genus:Sphaerobacter;species:Sphaerobacter thermophilus; 0.94781089 0.977454939 1.014158592 1.027735512 0.94455063 0.956877619 0.954157002 0.980939732 0.976677439 0.980137898 0.998190065 0.987720078 0.914723104 0.937188106 0.914166097 0.943248185 0.930391423 0.933108752 351732678 dehh Acidovorax radicis N35 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax radicis; 1.111487659 1.151437043 1.157339332 1.145441825 1.154973545 1.195675078 1.144096306 1.146369425 1.120506627 1.123433111 1.167620831 1.147660643 1.122071342 1.117361654 1.110731074 1.133518516 1.16111325 1.108480577 359290126 SoxB Thermus sp. CCB_US3_UF1 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus; 1.404168793 1.373463078 1.34159618 1.37213605 1.333224078 1.383093003 1.334988606 1.362309546 1.326393836 1.322236476 1.344598187 1.345290134 1.321742526 1.321328233 1.325605724 1.329463034 1.356549523 1.321171739 158423027 amyA Azorhizobium caulinodans ORS 571 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Azorhizobium;species:Azorhizobium caulinodans; 1.098813888 1.072055748 1.073061009 1.040116266 1.053271462 1.071968637 1.051773011 1.049119907 1.069942312 1.01978191 1.064980856 1.058821425 1.006218952 1.031077839 0.976287008 1.037821231 1.086324472 1.07647539 12657478 nifh Paenibacillus durus Nitrogen Nitrogen fixation NA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 0.846825895 0.829759554 0.833065146 0.824071993 0.822018893 0.807066426 385235293 pcag Ketogulonicigenium vulgare WSH-001 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ketogulonicigenium;species:Ketogulonicigenium vulgare; 1.242562919 1.189648348 1.191806506 1.224699749 1.17544117 1.184727131 1.179401018 1.190900657 1.218678505 1.190121101 1.177722109 1.221062368 1.149258365 1.108208135 1.133724536 1.159329513 1.217330053 1.199813857 218658454 nhh Rhizobium etli IE4771 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 1.225438407 1.209431866 1.188303358 1.213812465 1.231145588 1.232477894 1.212899939 1.223783877 1.183992874 1.20541275 1.205974846 1.208525373 1.206597986 1.169721998 1.190916085 1.215142119 1.215175135 1.199100699 116625095 tehb Candidatus Solibacter usitatus Ellin6076 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 1.084777542 1.015953738 1.029567722 1.051829016 1.037775683 0.993619873 1.029623824 0.999867317 1.066645984 0.999093372 1.035107649 1.042692455 0.991258968 0.96195543 0.9546885 0.987969515 1.01473031 1.012182806 162449760 RgaE Sorangium cellulosum 'So ce 56' Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 0.965839898 0.955035863 0.914149985 0.95792533 1.006414009 0.956801668 0.958063198 0.926921167 0.931318349 1.017094524 0.951276144 0.937473719 0.93890481 0.938268925 0.834199733 0.890067054 0.950634077 0.971835694 33594314 cysI Bordetella pertussis Tohama I Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella pertussis; 0.818459262 0.842266091 0.79476462 0.888860755 0.861989167 0.850565414 0.828442244 0.838043113 0.7988791 0.842707248 0.83343061 0.818747515 0.836370003 375054757 amyA Rhizobium sp. PDO1-076 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 0.865418634 0.855816099 0.845378275 0.907720935 0.874905685 0.827644153 0.873326878 0.865129113 0.924915938 0.859430212 0.877200335 0.909400819 0.795023495 0.834915621 0.823594141 0.843254168 0.842393187 0.86159315 311887319 xylg Rhodococcus equi 103S Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus equi; 1.308330836 1.300038781 1.268401521 1.272673655 1.260796714 1.322166463 1.264241287 1.266667336 1.254655689 1.286924335 1.263768813 1.269951488 1.246330482 1.271027188 1.237314566 1.268644095 1.287773728 1.297085866 357413794 amyA Streptomyces flavogriseus ATCC 33331 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces flavogriseus; 1.276497087 1.255389899 1.210742185 1.210001601 1.202990157 1.259385646 1.184110898 1.161489582 1.216814316 1.228660475 1.232473811 1.232521783 1.195347346 1.227495254 1.15570642 1.189706369 1.231953631 1.223681373 171688444 glucoamylase Podospora anserina S mat+ Carbon Cycling Carbon degradation Starch superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Lasiosphaeriaceae;genus:Podospora;species:Podospora anserina; 0.880233464 0.892708321 0.848949073 0.903180708 0.889735183 0.860266011 0.84547797 0.837121759 0.91022174 0.846821229 0.909866863 0.86548451 0.848144772 0.830122949 0.85679888 0.806121786 0.837742449 0.87840012 3165372 nifh unidentified nitrogen-fixing bacteria Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.868187714 0.862778846 0.9046673 0.902738537 0.856162639 0.888649287 0.84532124 0.906696583 0.863924725 0.875797694 0.822422471 0.877958593 0.822005639 0.821633682 0.85091159 0.85328559 0.866076393 193085272 acetylglucosaminidase Chlorobaculum parvum NCIB 8327 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobaculum;species:Chlorobaculum parvum; 0.764077053 0.826845903 296924571 mer Desulfurivibrio alkaliphilus AHT2 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobulbaceae;genus:Desulfurivibrio;species:Desulfurivibrio alkaliphilus; 0.821205549 0.824134517 0.816917285 0.802918697 0.826660223 0.827386023 115366286 terc Stigmatella aurantiaca DW4/3-1 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 1.002266091 0.89431882 0.891960093 1.038337598 0.957645204 0.964574204 0.988594546 0.921184475 0.961760777 0.92058215 0.919461687 0.986203066 0.928299539 0.925367143 0.874364242 0.981996729 0.937767989 0.930291575 121307593 terc Thermosinus carboxydivorans Nor1 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Thermosinus;species:Thermosinus carboxydivorans; 0.856777132 0.853265019 0.862906429 0.860237522 0.856923929 0.876793774 0.835394039 0.842687261 0.847906029 0.826951901 0.843780097 0.829586068 0.864227049 0.868025554 0.847220677 0.863589758 226188192 xylc Rhodococcus erythropolis PR4 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 0.964260012 0.928188964 0.923403257 0.933314 0.906074468 0.948238916 0.87075483 0.985385033 0.957866822 0.943245173 0.922852091 0.908116847 0.874244126 0.958010412 0.860344878 0.911801873 0.926661126 0.951183993 304393223 rd Ahrensia sp. R2A130 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ahrensia; 1.021552326 0.982724284 0.981716688 1.032458552 1.028132172 1.011925952 0.97916567 1.020589197 1.031260461 0.947627863 0.936313583 0.992273618 0.988476365 0.936958819 0.909790783 0.963183349 1.010795073 1.017545512 91186102 ppx Psychroflexus torquis ATCC 700755 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Psychroflexus;species:Psychroflexus torquis; 0.807826492 0.903156118 0.831028087 0.784057417 0.808523092 33243151 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.879941086 0.890102019 0.890731425 0.893129378 0.913395587 0.884009524 0.840155261 0.839617977 0.84266251 0.804879948 0.852070354 0.822913479 0.851170228 0.831867478 0.86787875 0.915421867 0.923124002 152985647 alkb Pseudomonas aeruginosa PA7 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 0.814150966 0.872141171 0.785335853 0.852432296 0.860711201 0.860929365 0.803965249 0.80676158 0.895500693 0.84286675 0.829441655 0.765128488 0.830861366 0.826023489 0.837850754 324999079 cysJ Pseudonocardia sp. P1 Sulfur Reduction NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Pseudonocardia; 1.092696083 1.071041559 1.070211656 1.122647135 1.066895648 1.111416533 1.089524473 1.13054893 1.080173077 1.076415295 1.031690054 1.102859468 1.007758059 1.001330551 0.97503417 1.032884647 1.046343399 1.013966542 323366408 nifh uncultured microorganism Nitrogen Nitrogen fixation NA 0.853374468 0.862470116 0.879941075 0.868080011 0.836723405 0.846246651 0.833005395 0.904114202 0.925556197 0.886721742 0.857184142 0.851504349 0.865491466 0.892128947 406697939 chnb Trichosporon asahii var. asahii CBS 8904 Organic Remediation Other Hydrocarbons NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Tremellomycetes;order:Tremellales;genus:Trichosporon;species:Trichosporon asahii; 1.098719681 1.124282524 1.11345141 1.10691374 1.062152475 1.120414291 1.077725236 1.08205039 1.070197075 1.098737601 1.090382287 1.057499352 1.082425957 1.116088465 1.038891753 1.107566786 1.099278625 1.103558165 397890748 mdlc Pseudomonas chlororaphis subsp. aureofaciens 30-84 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas chlororaphis; 1.354009815 1.333948366 1.320897974 1.340760955 1.297088245 1.345411845 1.284358602 1.315600367 1.309571751 1.293906803 1.312809044 1.315723206 1.288524071 1.297781954 1.277481398 1.299122316 1.332749748 1.309141436 169793362 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.815350579 0.933859129 0.903055681 0.976461406 0.923181791 0.964796666 0.9056519 0.888628352 0.896160703 0.954447437 1.055023799 0.964761783 0.908455653 0.905717758 0.900696674 0.901003183 0.864503784 392415463 bphc Mycobacterium chubuense NBB4 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium chubuense; 1.322812023 1.331017108 1.302916979 1.311694154 1.306023834 1.339422132 1.286043251 1.323438576 1.280515073 1.295880423 1.290608889 1.296214846 1.286119467 1.286106939 1.300254354 1.301095386 1.317551221 1.31210724 315596504 aln Variovorax paradoxus EPS Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 1.415769554 1.375852413 1.375226652 1.373555479 1.384497989 1.441492456 1.379850088 1.379621727 1.370193137 1.369008836 1.388787737 1.381719692 1.386193641 1.347344911 1.34605799 1.356150855 1.41046919 1.370368306 296927482 SoxC Starkeya novella DSM 506 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Starkeya;species:Starkeya novella; 0.818757173 0.846794973 0.774649091 0.8135123 0.835270315 0.797236291 0.852035218 0.801859355 0.823538531 0.825062935 0.860749976 311312411 cellobiase Aeromicrobium marinum DSM 15272 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Aeromicrobium;species:Aeromicrobium marinum; 1.260513157 1.228290389 1.21863234 1.255391741 1.196074408 1.235239237 1.159606162 1.220320469 1.250713055 1.205646402 1.208701764 1.241513419 1.178676099 1.204413679 1.180450941 1.198665053 1.245604016 1.204140743 358639061 nifh Azoarcus sp. KH32C Nitrogen Nitrogen fixation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 0.808228104 0.870930046 0.870257714 0.851354171 0.88083079 0.85437749 0.803461482 0.812038852 0.94146544 0.875245985 0.826297511 0.864297917 373851190 amyA Opitutaceae bacterium TAV5 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 1.05774701 1.014602405 0.996785423 0.968012868 0.985379752 0.983174383 0.941378628 1.015391622 1.027054863 0.992239427 0.961702745 0.98570801 0.952072084 0.990977454 0.940132629 0.951363107 1.023082079 1.021686623 59893226 nosz uncultured forest soil bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.794022962 0.798993802 0.835292709 0.833811431 21222837 vgb Streptomyces coelicolor A3(2) Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 0.860812649 0.823243858 0.891017903 0.843203007 0.863108527 0.854001997 0.822072794 0.826389621 0.814365366 0.881617128 0.855434453 0.797512383 0.8230795 0.818880949 0.795599339 0.858108778 0.879998004 312168000 PRI Burkholderia rhizoxinica HKI 454 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia rhizoxinica; 1.072172268 1.069185655 1.053056922 1.049485024 1.064724118 1.061412262 1.011603347 1.029864166 1.03331301 1.048270729 1.038432955 1.036735575 1.045279095 1.040039559 0.997649221 1.062260345 1.066055873 1.070643496 310762832 ppk Achromobacter xylosoxidans A8 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter;species:Achromobacter xylosoxidans; 1.465620268 1.452055644 1.426004325 1.428326382 1.422825849 1.461496737 1.429669445 1.412603331 1.410365783 1.404987777 1.426173919 1.416388677 1.397078483 1.390526622 1.400748984 1.426215449 1.442024112 1.399068 94471253 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.014908011 1.062351998 1.039907722 1.043724132 1.067393338 1.001524395 1.053719681 1.037499867 1.065872806 1.038000622 1.07080723 1.108413181 0.978142221 0.962661209 0.997776898 0.990763913 1.06785156 1.064887757 159465325 mg_chelatase Chlamydomonas reinhardtii Secondary metabolism Pigments Chlorophyll superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Chlorophyceae;order:Chlamydomonadales;family:Chlamydomonadaceae;genus:Chlamydomonas; 1.099643662 0.989815039 1.004747973 1.069419275 0.995327228 1.014263401 0.979524858 0.987983381 1.026405803 0.970446599 0.981857153 0.995886948 0.981986655 0.954244883 0.974575216 0.982234933 1.023048409 1.004491555 70731219 catechol Pseudomonas fluorescens Pf-5 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 1.168812749 1.176333952 1.14014635 1.146099328 1.178743829 1.192514013 1.135668806 1.195466091 1.12572688 1.17148838 1.147548299 1.155144242 1.137044935 1.148887527 1.153570688 1.186291259 1.166637887 1.181796442 6049283 nitro Pseudomonas fluorescens Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.939733289 0.930652091 0.936451316 0.97203972 0.967390516 0.960382574 0.93368441 0.89664699 0.961351832 0.897097422 0.919915238 0.871390588 0.918150602 0.88807463 0.89997469 0.92366554 0.972849448 0.952167488 364578203 xylj Flavonifractor plautii ATCC 29863 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;species:Flavonifractor plautii; 0.888638892 0.883145844 0.866169659 0.878165438 0.890459734 0.90107924 0.836626677 0.832048693 0.906993744 0.916077405 0.899987382 0.884123 0.807275542 0.852994065 0.855419287 0.850492491 0.90996347 0.906615881 197716123 ara Streptomyces sviceus ATCC 29083 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 0.993795447 0.959649566 0.978603052 0.994892961 0.958111738 0.987622801 0.983965425 0.997021163 0.966895833 0.986142088 0.967034644 0.983579454 0.936186595 0.917686264 0.871895229 0.944927332 0.999830491 1.028468145 340360547 amyA Actinomyces sp. oral taxon 448 str. F0400 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 448; 1.100184662 1.096456125 1.081336173 1.100949179 1.184441708 1.132265042 1.123403869 1.112416489 1.107051114 1.08962734 1.112645015 1.114672096 1.132511317 1.10607418 1.094415408 1.097274123 1.103428371 1.100345102 336177837 amyA Frankia symbiont of Datisca glomerata Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 0.776558591 0.851369803 0.858415168 0.854167186 0.871324925 0.798161273 0.83114725 0.855141342 0.813320025 0.900462194 0.862210363 0.804737673 0.846208086 0.899593586 56478484 ben_bcla Aromatoleum aromaticum EbN1 virulence NA NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 0.928159505 0.837506165 0.880596531 0.891161072 0.926739011 0.877249499 0.925062508 0.875956392 0.881835212 0.950045009 0.910297702 0.848624096 0.850151663 0.866717211 0.80708912 0.828172696 0.824025926 0.877081681 260222345 xylc Curvibacter putative symbiont of Hydra magnipapillata Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Curvibacter; 1.216274298 1.200001768 1.192554726 1.232462268 1.20520968 1.144348451 1.184515509 1.202993773 1.232660483 1.196615543 1.199144471 1.232223879 1.146917373 1.117048032 1.15147204 1.16146446 1.211607678 1.178806644 118469676 chnb Mycobacterium smegmatis str. MC2 155 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 1.148733308 1.125459782 1.108223424 1.161282995 1.103818025 1.136524656 1.11665096 1.147386951 1.141414068 1.125858373 1.108782278 1.128127329 1.089029933 1.111900257 1.088015452 1.118401491 1.152322359 1.116798682 330468466 urec Verrucosispora maris AB-18-032 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Verrucosispora;species:Verrucosispora maris; 1.071816742 1.129961932 1.085206825 1.091747619 1.065131632 1.114498375 1.075038238 1.061973854 1.0497356 1.075727924 1.075917246 1.084318765 1.059179536 1.042051814 1.058901229 1.078574561 1.093746381 1.057084423 311279861 mer Enterobacter cloacae SCF1 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter lignolyticus; 1.101795135 1.113760881 1.110147311 1.099866234 1.102677591 1.116071045 1.129735792 1.120987589 1.131245478 1.125271835 1.098101311 1.105535529 1.085808431 1.083240377 1.052617692 1.07409399 1.102357065 1.134266227 339503723 aoxb Roseobacter litoralis Och 149 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter litoralis; 1.135982128 1.093762087 1.093023691 1.122189719 1.096872931 1.101893161 1.091800995 1.087102316 1.112095128 1.121912842 1.099867473 1.108521027 1.052495155 1.062084454 1.048503298 1.057263272 1.150527582 1.108565348 112464171 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.85950882 0.865097673 0.847047841 0.899390246 0.82573751 0.886051421 0.866915155 0.840930679 0.846129818 0.792500082 0.816852278 0.878818195 0.873748998 4755082 nasa Klebsiella oxytoca Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella; 1.103946262 1.07854713 1.072301483 1.074380944 1.034652191 1.060921824 1.027340859 1.04653061 1.098093534 0.98124776 0.993950664 1.021512395 0.995812639 0.961986284 0.995980322 1.038914677 1.079028479 1.08691743 118465384 cdh Mycobacterium avium 104 Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 0.827885426 0.918222246 0.908926696 0.834251328 0.887654419 0.81467049 0.859180894 0.902000663 0.840593224 0.878062047 0.823169349 0.869613803 0.823312499 0.853836292 0.867487271 254822841 limeh Mycobacterium intracellulare ATCC 13950 Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium intracellulare; 0.909211111 0.838762541 0.935289548 0.914795372 0.854612611 0.968784657 0.868354512 0.937010346 0.858004552 0.895524051 0.902876433 0.97673666 0.849275013 0.898367331 0.913804944 0.927366428 0.919620259 0.890192072 111021875 atza Rhodococcus sp. RHA1 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 0.790951113 0.858070468 88702041 urec Congregibacter litoralis KT71 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Congregibacter;species:Congregibacter litoralis; 1.135563177 1.120996543 1.12740475 1.130815186 1.12888675 1.161358677 1.128459325 1.12529468 1.120664478 1.148526924 1.136824345 1.138826319 1.115748018 1.142644641 1.132895835 1.148670589 1.127100328 1.12529644 319764810 FBP_aldolase Alicycliphilus denitrificans BC Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Alicycliphilus;species:Alicycliphilus denitrificans; 0.90111263 0.935084547 0.891917978 0.927103525 0.85350872 0.897474245 0.895965143 0.900524487 0.896667912 0.897408565 0.873896986 0.851517952 0.864435772 0.906960147 0.893017704 251790274 phn Dickeya zeae Ech1591 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya zeae; 0.940743435 0.955539675 0.896606643 0.914107427 0.89285666 0.931341237 0.856617332 0.885965967 0.932940533 0.870866738 0.907491149 0.91405257 0.885681381 0.89246976 0.899059901 0.867458048 0.951042745 0.935624894 90903267 aoxb uncultured bacterium Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 1.002824691 1.013006633 1.027320575 1.01534412 1.027573758 1.034225458 1.027244606 1.026154015 1.008426326 1.058948734 1.038802929 1.010772731 1.00830948 0.988794988 0.936209484 0.96503243 1.044277179 1.02651589 291534978 amyA Roseburia intestinalis M50/1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Roseburia;species:Roseburia intestinalis; 0.769520177 0.84097865 146195669 bphc Bradyrhizobium sp. ORS278 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.844459797 0.893924054 0.84569124 261409817 chitinase Paenibacillus sp. Y412MC10 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 0.888866871 0.910003297 0.91165244 0.932529081 0.870512184 0.924013982 0.944018696 0.912378438 0.91066062 0.910001109 0.892821587 0.897923758 0.86547022 0.853938106 0.860638918 0.886124902 0.931152562 386857669 amyA Deinococcus gobiensis I-0 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus gobiensis; 0.825898913 0.868337945 0.808963428 0.83263995 0.806194348 0.833393376 0.865900721 0.845885486 0.789376845 0.894847714 54019377 merb Nocardia farcinica IFM 10152 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 0.899800317 0.871454622 0.821925929 0.870807694 0.840412773 0.840929246 0.870138836 0.887422285 0.860518147 0.803262134 0.836360798 0.807117409 0.823942464 0.806405016 0.882057457 0.9077452 374422176 tktA Bradyrhizobium sp. WSM471 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.852090678 0.857707562 0.840390666 0.82105339 0.817666522 0.798957112 32815765 mer Delftia acidovorans Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia; 1.169256644 1.093926955 1.109467459 1.130940135 1.192785673 1.190102577 1.148459553 0.966207312 1.009376476 1.188111392 1.112216768 1.131801487 1.123978322 1.183422978 1.152888333 1.125930322 1.08845911 1.121590909 223585947 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.847564207 0.860334231 0.870051806 0.901546391 0.869994902 0.884014124 0.843682287 0.86674758 0.844543537 0.879765901 0.86941956 0.848571246 0.895207096 0.964597062 226424960 phenol_oxidase Trametes sp. C30 Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Trametes; 0.895467503 0.973043219 0.87541063 0.959530954 0.866736584 0.92784015 0.862050112 0.912659938 0.974263287 0.886318835 0.867984467 0.931297746 0.868038422 0.895653072 0.935180381 0.903489907 0.976522029 0.936637677 170777897 soxY Leptothrix cholodnii SP-6 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Leptothrix;species:Leptothrix cholodnii; 0.982060247 0.978539412 0.957330743 0.979374453 0.957897985 0.949676756 0.945894243 0.925368808 0.976730538 0.945692422 0.917158647 0.957789699 0.969989492 0.892262949 0.91863283 0.868393203 0.992052135 0.940556606 291454332 urec Streptomyces albus J1074 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces albus; 1.234861905 1.182578683 1.183876751 1.184878678 1.156814656 1.196805782 1.109686484 1.150122756 1.180082977 1.174861579 1.166219121 1.16876027 1.133315201 1.172705759 1.127483644 1.156790719 1.212358123 1.158689542 146406395 fccab Bradyrhizobium sp. BTAi1 Sulfur Sulfide Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 1.257336534 1.189021164 1.220046413 1.200352015 1.182115493 1.225502072 1.175153671 1.210803969 1.176679665 1.198299243 1.189742734 1.204219341 1.177400949 1.150533296 1.157718692 1.152028109 1.225856753 1.191665063 59893466 nosz uncultured forest soil bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.948550188 0.924005596 0.917047605 0.940987116 0.911710816 0.926589185 0.863256412 0.853924908 0.927771305 0.930849134 0.913917298 0.891496439 0.889915665 0.908064081 0.856457545 0.939792916 0.934569174 0.870572177 90199690 terc Mycobacterium vanbaalenii PYR-1 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 0.97502784 0.958517232 0.975439089 0.993848852 0.906287129 0.938253972 0.907314527 0.96160584 1.001366685 0.947991678 0.941074772 0.969650474 0.953519003 0.872087759 0.888056802 0.934804353 0.97956517 0.922191232 385884856 mer Micromonospora lupini str. Lupac 08 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Micromonospora;species:Micromonospora lupini; 1.259659844 1.196883882 1.250563396 1.251292665 1.246108813 1.263282333 1.233407846 1.243743803 1.223112302 1.251364231 1.243492019 1.256674185 1.254068763 1.203538784 1.224847495 1.223036583 1.279265548 1.198315732 315477771 nrfa Aggregatibacter segnis ATCC 33393 Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Aggregatibacter;species:Aggregatibacter segnis; 1.157958398 1.163160561 1.123800949 1.102856973 1.194818145 1.214657853 1.159809116 1.042281238 1.030080214 1.209354959 1.144012423 1.136962902 1.13861923 1.224550152 1.187349582 1.116285887 1.134566725 1.138239221 254271863 tfda uncultured bacterium Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria; 0.94182395 0.895807204 0.891197945 0.873863231 0.898132981 0.923485665 0.891442721 0.904741363 0.945346523 0.932784292 0.82450429 0.95731048 0.887279948 0.873193582 0.874141643 0.91017568 0.93494963 0.933434928 39998513 mer Geobacter sulfurreducens PCA Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter sulfurreducens; 1.156497228 1.131935516 1.137284904 1.179358753 1.168651403 1.13718028 1.159037563 1.159280324 1.186206717 1.150634905 1.177135759 1.182892373 1.142840142 1.09188791 1.113652004 1.132694952 1.160751751 1.131076702 119693872 catechol Mycobacterium sp. KMS Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 1.002551223 1.141395051 1.058158874 1.045150383 0.998604107 0.982688381 0.95144362 1.017535767 0.959042634 0.970425054 1.007238884 1.037503523 0.923441923 0.972887203 0.932764538 0.978622677 0.988743695 0.986159705 359778537 amyA Arthrobacter globiformis NBRC 12137 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter globiformis; 1.553830845 1.505161536 1.480478737 1.519591478 1.469715144 1.546399335 1.463245439 1.497435493 1.488338657 1.484192822 1.490639264 1.494278727 1.455955608 1.481549889 1.453347298 1.487454615 1.535376584 1.494122012 268680800 arsc Sulfurospirillum deleyianum DSM 6946 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Sulfurospirillum;species:Sulfurospirillum deleyianum; 1.051695162 0.978052822 1.015050378 1.043144001 1.067071224 0.995164129 1.016895723 1.041471672 0.989278638 0.991482904 1.021960799 1.038701544 1.067610377 0.946165174 0.958173107 0.991149119 1.013248994 0.988566418 253689416 pme Pectobacterium carotovorum subsp. carotovorum PC1 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium carotovorum; 0.922259329 0.936341365 0.98314202 0.978343008 0.957642945 0.967708193 0.939831893 0.913384355 0.96447489 0.926730237 0.896373393 0.931585061 0.95773284 0.896014668 0.913090046 0.942548219 1.013259735 0.936319998 114767496 cmci Pelagibaca bermudensis HTCC2601 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pelagibaca;species:Pelagibaca bermudensis; 1.042560811 1.022453452 0.999256434 1.013174968 0.989725133 1.02427274 0.979922677 0.976777087 0.971950514 1.003979649 0.988487913 1.003443152 0.97164886 0.947552981 0.975419634 0.990605621 1.032720976 1.038077717 3660497 xylanase Claviceps purpurea Carbon Cycling Carbon degradation Hemicellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Clavicipitaceae;genus:Claviceps; 1.135161811 1.211333651 1.179710907 1.142799796 1.185224875 1.189141393 1.160351631 1.174876834 1.138679424 1.178205321 1.164804794 1.170594457 1.129099297 1.163923304 1.17327457 1.178253436 1.135063317 1.164251748 78093576 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.936482493 0.93380023 0.965761917 0.978580412 1.051997282 0.954322908 0.914163549 0.84161209 0.854303294 0.869747087 0.849506792 0.992496053 0.916246467 0.856783272 0.916462419 1.135231765 0.998994473 124485383 rubisco Methanocorpusculum labreanum Z Carbon Cycling Carbon fixation Calvin cycle superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;family:Methanocorpusculaceae;genus:Methanocorpusculum;species:Methanocorpusculum labreanum; 0.845220369 0.913985537 0.873918936 0.900094727 0.882465273 0.869477835 0.823769624 0.858959995 0.878173395 0.824130597 0.846012468 0.846648855 0.857474559 0.821198406 0.85194176 0.825669631 0.892339594 0.892332903 126711044 pcag Sagittula stellata E-37 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 0.955976433 0.947920431 0.85793115 0.91503149 0.860511146 0.929684725 0.885363406 0.903888038 0.936993428 0.886686932 0.901378658 0.906844307 0.89329873 0.87721165 0.869884448 0.903035372 0.932474067 0.893161282 56479332 arylest Azoarcus sp. EbN1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 0.851320258 0.895765661 0.834687737 0.905692311 0.837931114 0.878972872 0.868036269 0.816965802 0.861044227 0.845955966 0.858811175 0.814358505 0.84676821 0.815017977 0.857139947 0.938309401 218715462 endopolygalacturonase_fungi Talaromyces stipitatus ATCC 10500 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 0.864212825 0.812931926 0.786427026 0.837356306 0.870989227 0.828788432 0.8167505 0.807508317 374328121 C_CoA_hydratase_DiC4HB Pyrobaculum sp. 1860 Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum; 1.384431736 1.332324035 1.346119551 1.347461195 1.338102859 1.323710632 1.304468902 1.326319434 1.366011999 1.386348617 1.336473025 1.369830826 1.28043043 1.28584943 1.299610169 1.309664024 1.372810466 1.333974582 385675433 catechol_b Amycolatopsis sp. ATCC 39116 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis; 0.928276349 0.92349331 0.937948873 0.922898367 0.944622849 0.92147033 0.932386631 0.918093734 0.899339135 0.916053939 0.902946826 0.934177414 0.873792237 0.885368464 0.834832928 0.888708074 0.92162615 0.948579703 104782500 alginase Pseudomonas entomophila L48 Carbon Cycling Carbon degradation Alginate superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas entomophila; 0.82029085 0.873083864 0.847857141 0.83633378 0.814231162 0.849803334 0.814319216 0.792817903 0.877075922 0.872185226 207738888 phenol_oxidase Ralstonia solanacearum IPO1609 Carbon Cycling Carbon degradation Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 0.867430372 0.895615811 0.891961476 0.895824553 0.856552742 0.903929347 0.859351932 0.911557815 0.912835746 0.875973018 0.835820996 0.888647539 0.822928968 0.833617959 0.823569241 0.818948783 0.886010062 0.89628573 147830786 xylanase Clavibacter michiganensis subsp. michiganensis NCPPB 382 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Clavibacter;species:Clavibacter michiganensis; 1.1009517 1.127887016 1.08219655 1.095463023 1.091678995 1.126482237 1.044686621 1.039338942 1.023437334 1.111447456 1.071451587 1.07552929 1.092852757 1.088019477 1.060779112 1.054194568 1.103374697 1.099712867 146282666 trzn Pseudomonas stutzeri A1501 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 0.881063578 0.828363751 0.835135854 0.800257145 0.850003369 0.8405686 0.83047368 0.763791448 0.818294323 0.809133427 0.856255529 0.861829387 90413891 nitrilase Photobacterium profundum 3TCK Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium profundum; 0.836859363 0.819237298 0.887325902 0.860851907 0.806609972 0.85238635 146306697 alginase Pseudomonas mendocina ymp Carbon Cycling Carbon degradation Alginate superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas mendocina; 1.123576519 1.099298496 1.125933357 1.152526466 1.158106039 1.113972437 1.108779824 1.162807813 1.15174419 1.112099945 1.116533681 1.156464777 1.106607858 1.107562838 1.106521021 1.164604206 1.110061144 1.090375447 55978103 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.89620252 0.935590787 0.879916295 0.842327129 0.966685544 0.983717314 1.008639961 0.818951459 0.802422996 0.938769937 0.991907394 0.965456063 0.903215662 0.909180338 0.890040358 0.953469583 0.937885296 0.938394428 161380409 mer Oceanibulbus indolifex HEL-45 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanibulbus;species:Oceanibulbus indolifex; 0.90402084 0.902988367 0.843553348 0.90324708 0.889731354 0.797112734 0.85564882 0.857886021 0.846439555 0.890751756 0.876473684 0.808352322 0.861230709 0.932703998 171057103 tktA Leptothrix cholodnii SP-6 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Leptothrix;species:Leptothrix cholodnii; 1.00237331 1.011575426 0.99692181 0.955157701 0.9561585 1.021289479 0.95065783 0.924268265 0.977363339 1.016885321 1.000757707 1.011947801 0.981213912 0.969893899 0.910722977 0.96108855 1.014040465 1.003144781 385330849 bend Marinobacter adhaerens HP15 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter adhaerens; 1.000700782 0.998873914 1.033280843 1.032608472 1.016029878 1.068862266 1.022170404 0.989928858 1.039517847 1.041815335 1.015243105 0.985271785 0.966281562 0.957037672 0.973865118 1.027155337 1.001593546 299792879 mhpa Amycolatopsis mediterranei U32 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 0.900628224 1.002489165 0.9478444 0.916682329 0.920896531 0.979555446 0.893990688 0.93236472 0.860740711 0.919839028 0.901540319 0.92611872 0.916333152 0.929941829 0.905187423 0.946989167 0.930927152 0.959425887 299794685 badh Amycolatopsis mediterranei U32 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 0.817683857 0.815084658 0.831892574 0.820953981 0.803475022 0.852795089 0.840155029 0.820866321 0.814612553 0.804482766 0.843691782 0.841652659 84388610 tktA Oceanicola batsensis HTCC2597 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola batsensis; 1.690385337 1.656365259 1.653598102 1.633160318 1.61865129 1.690109081 1.625923844 1.640810128 1.628094132 1.635266406 1.634676064 1.631435192 1.599106058 1.594736704 1.599310711 1.619937155 1.643549341 1.637425055 390449641 terc Nitratireductor aquibiodomus RA22 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Nitratireductor;species:Nitratireductor aquibiodomus; 1.041507878 0.892175766 0.874379407 0.941525749 0.842569923 0.822603499 0.926404526 0.833170466 0.89008432 0.858513275 0.846556673 0.884900592 0.813314195 0.824110413 0.879504712 0.87522585 0.896066976 150399896 nifh Methanococcus vannielii SB Nitrogen Nitrogen fixation NA superkingdom:Archaea;phylum:Euryarchaeota;class:Methanococci;order:Methanococcales;family:Methanococcaceae;genus:Methanococcus;species:Methanococcus vannielii; 0.881698922 0.892282606 0.856314426 0.893245082 0.911621579 0.906716813 0.887708943 0.883355204 0.901774629 0.906129177 0.852467844 0.900497943 0.870652667 0.843545119 0.802727681 0.826345319 0.865050797 0.858119887 299063950 cysJ Erwinia billingiae Eb661 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia billingiae; 1.039201634 1.078100232 1.018054914 1.05200789 1.04078386 1.078579414 1.021935748 1.024656461 1.00695293 1.068960563 1.030290784 1.044399414 1.031070058 1.039728141 1.010931075 1.034988177 1.058753652 1.059857529 304342912 Sir Paenibacillus curdlanolyticus YK9 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus curdlanolyticus; 0.793190865 0.847868713 0.827367284 0.837230771 0.830146047 0.806042196 0.858768857 0.81072845 0.798780202 0.791312968 0.84526855 0.871057736 284073146 actin_Viridiplantae Siphonocladus tropicus Other Phylogenetic NA superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Ulvophyceae;order:Cladophorales;family:Siphonocladaceae;genus:Siphonocladus; 0.791267619 0.825892519 0.779091554 0.789150731 260223332 phn Curvibacter putative symbiont of Hydra magnipapillata Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Curvibacter; 0.967047121 0.857092815 0.896462495 0.883846262 0.880910996 0.900027491 0.910182357 0.866778487 0.857824968 0.910371881 0.902777509 0.919924834 0.815480328 0.847547503 0.807851817 0.824895062 0.883247414 0.897147321 359250332 tktA Mesorhizobium alhagi CCNWXJ12-2 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium alhagi; 0.901890165 0.904995005 0.903105348 0.887048476 0.892528373 0.917602801 0.880747208 0.935060609 0.895917858 0.915632838 0.898658195 0.911496868 0.917118827 0.988464503 0.953742526 0.864097997 0.916993217 0.913554363 378764249 mer Sinorhizobium fredii HH103 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium fredii; 0.84231606 0.902003897 0.818208953 0.921175889 0.824327607 0.828845098 0.874190565 0.84060695 0.832690552 0.812662728 0.820583078 0.837600478 0.868345247 156066398 hsp90_Fornicata Trimitus sp. TRION Other Phylogenetic NA superkingdom:Eukaryota;family:Enteromonadidae;genus:Trimitus; 0.959563722 0.836284448 0.868755216 0.944838894 0.940252127 0.826363104 0.894317865 0.875943174 0.861115581 0.84327774 0.837329547 0.883174064 0.839783366 0.806368677 0.814065966 0.867483784 0.87918572 350527427 alkk Candidatus Burkholderia kirkii UZHbot1 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Candidatus Burkholderia kirkii; 0.902598816 0.878767855 0.888702108 0.905801084 0.882389439 0.893474921 0.881731054 0.870681345 0.894029466 0.869898494 0.824762365 0.858602169 0.795283642 0.803971573 0.804742247 0.909317684 0.890540723 262196703 ppx Haliangium ochraceum DSM 14365 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Kofleriaceae;genus:Haliangium;species:Haliangium ochraceum; 0.842856454 0.90690109 0.847196617 0.876908799 0.893573226 0.877812998 0.792457733 0.853787638 0.889644226 0.805428388 0.818813816 0.845594905 0.7909049 0.82361686 0.894045596 0.860399621 257460107 ppx Campylobacter gracilis RM3268 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter gracilis; 0.885137136 0.872155961 0.823501023 0.89545204 0.849643327 0.896977412 0.849220533 0.831127218 0.818270128 0.874720901 0.851333247 0.853851938 0.847725444 0.943262391 0.901278939 0.868752099 63029731 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.910929766 0.880748388 0.905435761 0.905039661 0.926044944 0.88297519 0.92523629 0.915396623 0.910173664 0.848856329 0.928793777 0.902009552 0.895033419 0.851714651 0.907633407 0.877361561 0.881179161 0.874522186 325550151 xylanase Xanthomonas gardneri ATCC 19865 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas gardneri; 1.000051358 0.981256146 0.974338242 1.028141303 0.897039705 0.966308747 0.948749289 0.954567719 0.975459221 0.980037822 0.91588804 0.953049315 0.876005753 0.949430172 0.898986597 0.911523133 0.990315995 0.997549531 95111185 catb Pseudomonas Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae; 0.891389457 0.909460648 0.836583027 0.908766396 0.854009184 0.844187892 0.847916189 0.847321381 0.823785463 0.870186833 0.817798957 0.869907717 0.893830953 254271981 tfda uncultured bacterium Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria; 1.134297355 1.133280167 1.080153305 1.106459995 1.132360292 1.196540522 1.143675344 1.101735739 1.097151968 1.09755394 1.120601415 1.113923333 1.099929927 1.090269205 1.109115668 1.113372332 1.152655723 1.138039933 237683909 rgl Teredinibacter turnerae T7901 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;genus:Teredinibacter;species:Teredinibacter turnerae; 0.912230156 0.890670949 0.87782192 0.941803837 0.84237899 0.882560118 0.862845661 0.884887089 0.930156569 0.845271503 0.870802623 0.861636707 0.850539777 0.830826134 0.884238821 0.892278508 0.900236705 0.869292393 110818588 ppx Rhodococcus sp. RHA1 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 0.979354429 1.022089958 0.96513961 0.969143407 0.966148054 1.006947595 0.942592375 1.033875911 0.961008379 0.975528391 0.985809756 0.957404668 0.972658882 0.923125762 0.97327176 0.977427288 0.991270937 1.051430049 163746718 soxY Oceanibulbus indolifex HEL-45 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanibulbus;species:Oceanibulbus indolifex; 0.90230964 0.925963025 0.908863558 0.949829027 0.921508487 0.895157778 0.915269141 0.858719819 0.919074931 0.89082758 0.882101713 0.882543528 0.820988742 0.810476112 0.861988975 0.945638132 0.941493823 379710525 alkb Nocardia cyriacigeorgica GUH-2 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia cyriacigeorgica; 1.050558792 1.060646129 0.98126107 1.047890254 0.965984818 1.066832044 0.999792022 1.013178036 1.036673654 1.040498579 0.999012672 1.009412884 0.965493929 0.963203942 0.913334311 1.04186202 1.042520192 1.055257566 29832525 amyA Streptomyces avermitilis MA-4680 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 1.447113163 1.410452017 1.369770348 1.413604399 1.358484725 1.422414288 1.324353281 1.40530923 1.371196025 1.373533585 1.358302028 1.381960646 1.350816325 1.33170028 1.329981998 1.353484954 1.454883205 1.367777567 221736658 tktA Agrobacterium vitis S4 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium vitis; 1.27181257 1.24900402 1.223512574 1.265837352 1.215056103 1.283780088 1.23603907 1.240844715 1.242268197 1.227913487 1.230556974 1.24237884 1.229939633 1.211980202 1.222758928 1.257385083 1.261099759 1.233721774 93354968 ppk Cupriavidus metallidurans CH34 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 1.060663553 1.030939693 0.989155296 1.003605227 0.995163398 0.981201119 0.959084192 0.976106764 1.001957358 0.983332827 1.003992661 0.97840396 0.972101735 0.97204576 0.976669241 0.939729643 1.013905236 0.994740697 319900875 xylanase Bacteroides helcogenes P 36-108 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides helcogenes; 1.151566833 1.146021929 1.146119516 1.18077434 1.128514304 1.159863156 1.112063019 1.118017712 1.08182409 1.137479894 1.080086656 1.115704688 1.071019751 1.074483455 1.015505 1.06603264 1.100555173 1.104376888 310825953 dsra Eubacterium limosum KIST612 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Eubacteriaceae;genus:Eubacterium;species:Eubacterium limosum; 0.811873805 0.845628296 0.804629532 0.892093541 0.84607524 0.836439272 0.814217856 0.840578383 0.88015472 0.819886934 0.874622197 0.808661108 0.853669183 0.846760442 0.825043898 254510328 linc Rhodobacteraceae bacterium KLH11 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 0.786490281 0.824931787 119964666 rubisco Sulfobacillus acidophilus Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XVII. Incertae Sedis;genus:Sulfobacillus; 1.105118581 1.131085221 1.003669498 1.100122473 1.148706056 1.127997617 1.161583831 1.088696565 1.047859351 1.159044204 1.096314883 1.067014835 1.12123932 1.121107704 1.053376226 1.116954927 1.098434109 1.074231242 345302878 xylanase Rhodothermus marinus SG0.5JP17-172 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Bacteroidetes;order:Bacteroidetes Order II. Incertae sedis;family:Rhodothermaceae;genus:Rhodothermus;species:Rhodothermus marinus; 1.025699289 1.015076768 1.044618594 1.035300111 0.993038319 1.019145709 0.998368599 0.977004531 1.038401169 1.040941441 1.020149632 1.032457072 1.018408327 0.976722295 0.995703188 1.005780234 1.036365535 0.999500672 295103193 amyA Faecalibacterium prausnitzii SL3/3 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Faecalibacterium;species:Faecalibacterium prausnitzii; 0.975409312 0.939183103 0.931495071 0.929850362 0.962845792 0.985264916 0.910878062 0.875916206 0.963716538 0.93462594 0.960554403 0.96367267 0.856479926 0.903015161 0.881633768 0.925143156 0.952523931 0.965849175 340554968 tktA Acidithiobacillus caldus SM-1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus caldus; 0.851225531 0.856801233 0.863565098 0.959140648 0.877756089 0.88218421 0.865331785 0.929286111 0.882034007 0.880918612 0.82197044 0.926273152 0.831007509 0.82885986 0.820353429 0.905647967 0.879184084 0.865473042 325968023 dsrB Vulcanisaeta moutnovskia 768-28 Sulfur sulfite reduction NA superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Vulcanisaeta;species:Vulcanisaeta moutnovskia; 0.863725443 0.840503817 0.857892149 0.847764502 0.873391881 0.906288445 0.894756144 0.903173429 0.859172323 0.891735952 0.891884446 0.868088285 0.856205616 0.876420106 0.824027699 0.859253458 0.852038806 50840700 amyA Propionibacterium acnes KPA171202 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium;species:Propionibacterium acnes; 1.129858497 1.150748404 1.112724575 1.159380169 1.143387665 1.114108617 1.100784505 1.136115347 1.157984283 1.099053502 1.072564697 1.162126945 1.077766541 1.069516169 1.074540265 1.096171762 1.127175262 1.116563787 63081906 nosz unidentified bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.932055962 0.933126011 0.858399313 0.939643643 0.83392828 0.905178741 0.892183038 0.905107748 0.912418328 0.928304007 0.916153508 0.908896204 0.827967012 0.845864039 0.835050778 0.850566034 0.916635802 0.959669117 298593545 cysI Afipia sp. 1NLS2 Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Afipia; 1.041374118 1.074732612 1.072651576 1.056226215 1.06796043 1.041106495 1.004968162 1.03573749 1.062819091 1.030764133 1.066821718 1.046953229 0.999543127 1.014775783 1.016706958 1.020659573 1.067048003 1.051164364 85693864 mer Idiomarina baltica OS145 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Idiomarinaceae;genus:Idiomarina;species:Idiomarina baltica; 1.108988522 1.072158229 1.065960578 1.128599935 1.113976797 1.087227423 1.087791257 1.094747911 1.101753785 1.03970518 1.084065573 1.123285365 1.069008344 1.048454799 1.107540202 1.062422429 1.099243915 1.071284495 37925891 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.975823744 1.030301998 0.908537314 0.950884505 0.949864543 0.935186949 0.92047193 0.973408171 0.953468142 0.906692429 0.917430052 0.927096523 0.890409694 0.918925327 0.864042469 0.910049177 0.937923418 0.943399053 367043112 phenol_oxidase Thielavia terrestris NRRL 8126 Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Thielavia;species:Thielavia terrestris; 1.128219271 1.071794938 1.128388205 1.153665261 1.112082192 1.124316629 1.111118093 1.109940095 1.110113258 1.046963365 1.127243521 1.096352247 1.076864392 1.033385536 1.103314445 1.075037015 1.130274509 1.078578923 400537952 mhpb Mycobacterium colombiense CECT 3035 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium colombiense; 0.998408991 0.970083761 1.002140282 1.009157548 0.986877138 1.009900485 0.987432806 1.012815977 0.976210155 1.001347224 0.972614353 0.991088302 0.929668789 0.958829478 0.947852197 0.896135288 1.00871398 1.024605688 121603527 mhpa Polaromonas naphthalenivorans CJ2 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 0.845405365 0.979997919 0.869370317 0.89665521 0.906058539 0.927577622 0.846156391 0.860146755 0.803029515 0.915378237 0.886139265 0.881927894 0.85935787 0.849749444 0.870521195 0.898565231 0.947857853 156523553 one_ring_23diox uncultured bacterium Organic Remediation Aromatics Other aromatics superkingdom:Bacteria; 0.854600383 0.795234694 0.796981042 0.847854134 0.831112337 0.789272162 0.826131472 0.793022484 0.903046498 0.865658144 115315696 catechol Pseudomonas sp. MT1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 1.084969478 1.108932861 1.039521451 1.07877644 1.028555818 1.091733445 1.009687962 1.033799153 1.05853329 1.072792282 1.040922427 1.023342174 1.022867916 1.035137043 0.989423176 1.0428798 1.088244899 1.101409526 219741560 FBPase Xanthobacter flavus Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter; 0.910708324 0.828394053 0.870215441 0.852472875 0.861416422 0.838363334 0.84805781 0.88451987 0.827840044 0.824559682 0.829485412 0.91575593 0.884714521 83026018 alkb uncultured bacterium Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria; 0.922270834 0.934022529 0.95104277 0.927990629 0.902474687 0.956104372 0.877955318 0.857273074 0.943977649 0.91346826 0.914205571 0.882140474 0.893234911 0.904923665 0.86831957 0.911467786 0.953389958 0.90445552 225352717 amyA Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium pseudocatenulatum; 1.010467386 0.993308243 0.977171412 0.98465327 1.207133974 1.021255257 1.024210176 0.93679422 1.028610426 1.037100404 1.04308237 1.301511012 1.008045099 1.014425628 1.018045023 0.966041255 1.003713181 1.002506826 92111140 dsrB Desulfomicrobium thermophilum Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfomicrobiaceae;genus:Desulfomicrobium; 0.860174605 0.786663765 16126632 vana Caulobacter crescentus CB15 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter vibrioides; 0.951213024 0.944630391 0.93919554 0.956247388 0.927692876 0.926742485 0.927400136 0.950550387 0.925056892 0.94662638 0.880970501 0.906608332 0.877893745 0.905231419 0.884338629 0.889517451 0.920191224 0.939644486 384136902 amyA Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Alicyclobacillus;species:Alicyclobacillus acidocaldarius; 0.882689925 0.841781525 0.876460924 0.869076696 0.86776328 0.825095972 0.894637432 0.882425923 0.886169719 0.859370936 0.806930922 0.817981128 0.837718852 0.906246437 333940644 bphc Novosphingobium sp. PP1Y Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 1.088573179 1.04017164 1.037237162 1.098351474 1.065836641 1.103082962 1.088771055 1.086534814 1.03792168 1.022188411 1.062169646 1.048861411 1.020843023 1.019167956 0.960324338 1.004227063 1.065150954 1.091632743 291620460 tktA Gluconacetobacter xylinus Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter; 1.302667598 1.231003509 1.293543125 1.287351975 1.276561735 1.297180749 1.254458808 1.274984252 1.271374487 1.293408993 1.266516975 1.284783794 1.256469951 1.26927495 1.264865934 1.259066449 1.276514132 1.261728033 344997949 cellobiase Streptomyces sp. SirexAA-E Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 0.826151727 0.853233933 0.862665937 0.882725567 0.865193273 0.86725862 0.861243191 0.859744285 0.876786807 0.902568132 0.823623919 0.842991095 0.810097607 0.92594389 0.891275024 0.876269325 300075431 B_lactamase_A Herbaspirillum seropedicae SmR1 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herbaspirillum;species:Herbaspirillum seropedicae; 0.793418507 0.78704669 0.799494649 0.815040055 209954737 ara Fusarium oxysporum Carbon Cycling Carbon degradation Hemicellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;genus:Fusarium; 1.126726724 1.095923357 1.134194028 1.148840553 1.115442269 1.1429725 1.113886158 1.152375583 1.12587596 1.089044352 1.131710545 1.099793672 1.073099381 1.049804657 1.056347818 1.045787265 1.123362307 1.099495862 290569959 xyla Stackebrandtia nassauensis DSM 44728 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Glycomycetaceae;genus:Stackebrandtia;species:Stackebrandtia nassauensis; 1.434028619 1.449853616 1.407141631 1.417297568 1.400803493 1.44680094 1.407574632 1.42115879 1.396090269 1.388886624 1.400312098 1.391139317 1.380309932 1.379218784 1.393308866 1.392867369 1.421036261 1.399526221 403746402 catechol_b Alicyclobacillus hesperidum URH17-3-68 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Alicyclobacillus;species:Alicyclobacillus hesperidum; 0.834883019 0.833648929 0.843797714 0.882720573 0.811118597 0.80628088 0.823838547 0.811525331 0.836793046 340247325 aps_apra uncultured bacterium Sulfur adenylylsulfate reductase NA superkingdom:Bacteria; 0.966036727 0.936395987 0.958464587 0.933615423 1.017395711 0.923616098 0.944883955 0.954035478 0.913313249 0.929376547 0.9483823 0.921904655 0.888163662 0.918106902 0.832613054 0.853910406 0.939546225 0.96721606 372475418 cysJ Opitutaceae bacterium TAV5 Sulfur Reduction NA superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 0.915567935 0.924900958 0.855554093 0.894282546 0.907157724 0.825425418 0.87595446 0.914123716 0.878294245 0.850393681 0.855646695 0.859405495 0.913771108 0.907103937 39648529 mdlc Rhodopseudomonas palustris CGA009 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 0.983702315 0.944565095 0.984423899 1.022329035 0.922255059 0.924180404 0.930560787 0.955240452 0.954820751 0.935170905 0.901103842 0.943045933 0.891490048 0.915964244 0.86085901 0.922217432 0.988475613 0.955875574 338165358 mdlc Cupriavidus necator N-1 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 0.996301421 1.031773123 1.043049072 1.042771526 1.076882516 1.073179103 0.967579992 1.117361588 1.013211253 0.972431772 0.970007293 1.011449149 0.984666208 0.94010907 1.043686784 1.072599656 1.171980348 1.044479655 357636310 pula Streptococcus macacae NCTC 11558 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus macacae; 1.020619261 0.998253283 0.981933198 1.001991215 1.081830401 0.986729582 1.005742876 0.983850841 0.978956958 1.000326258 1.14838611 1.036146464 0.997234087 0.971292335 0.967616803 0.979932847 1.00333994 1.012132175 358635903 FBPase Azoarcus sp. KH32C Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 0.811642414 0.841629048 0.826427693 0.788724801 354613995 alkb Saccharomonospora paurometabolica YIM 90007 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora paurometabolica; 0.953654728 0.935121004 0.92557807 0.903983744 0.943345685 0.970481182 0.929207892 0.915751412 0.932904077 0.929791537 0.924363319 0.919443091 0.936554988 0.936093992 0.949879439 0.905511546 0.956494186 0.952114932 304403713 amyA Paenibacillus curdlanolyticus YK9 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus curdlanolyticus; 0.912548179 0.880470828 0.877914463 0.866320074 0.825263895 0.872604506 0.892828779 0.885657988 0.851034136 0.881749012 0.87141761 0.844637392 0.837262051 0.883330907 0.839176195 406822175 catechol_b Limnobacter sp. 2A6 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Limnobacter; 0.800731745 0.865620077 0.869411497 0.835566558 0.841917634 0.841275346 0.856297323 0.839913373 0.815043256 0.853594689 0.814547584 0.802508125 0.862322171 0.855320911 0.865129376 0.843690201 0.88574344 0.825476934 117986822 poba Burkholderia phymatum STM815 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 0.97322296 1.030702919 0.927425709 0.930313233 0.966771781 1.040040593 0.941177315 0.937427847 0.955553992 0.961712652 0.923591085 0.964988455 0.941071366 0.918498904 0.928441783 0.940753926 1.047010284 1.021696765 290467811 phytase uncultured microorganism Phosphorus Phytic acid hydrolysis NA 0.794491129 0.826550888 0.824001057 0.823722511 212541773 tfda Penicillium marneffei ATCC 18224 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces marneffei; 0.853825692 0.822779882 0.877834073 0.881185094 0.799850266 0.812209075 0.8266785 0.865174793 0.874291186 0.886764643 0.834167605 351594015 arsc Pelagibacterium halotolerans B2 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Pelagibacterium;species:Pelagibacterium halotolerans; 0.795991582 0.840989354 0.847006067 0.897241961 0.821455086 0.882121939 0.838688866 0.83610095 0.833820465 0.824107303 219965628 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.972735124 0.936371649 0.883334647 0.970251474 0.904167849 0.95288034 0.917615577 0.878770653 0.940672081 0.900105198 0.89888802 0.913320372 0.888553682 0.913059629 0.883832985 0.918317571 0.964092221 0.887987231 326415460 phdci Polymorphum gilvum SL003B-26A1 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;species:Polymorphum gilvum; 1.077876538 1.06267049 1.081190899 1.064913222 1.034316161 1.062186532 1.014175329 1.058113461 1.080480588 1.09006138 1.055732332 1.069707604 1.019569383 1.052851055 1.022632546 1.049107589 1.085015459 1.0683299 226244453 ppk Rhodococcus opacus B4 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus opacus; 0.966234435 0.985792927 0.942895579 0.982609348 0.939608072 0.926413605 0.915053822 0.901830871 0.955882399 0.966195354 0.936922989 0.992808904 0.917087527 0.890345577 0.86951837 0.867755063 0.957044723 0.90483321 288924210 xylj Frankia sp. EUN1f Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 0.952739764 1.000296719 0.982252442 1.003789107 0.97831852 0.980213488 0.963831457 0.959323891 0.983440758 0.97895441 0.990946045 0.950779936 0.947268669 0.91621331 0.840082239 0.935879402 0.9934496 1.038737778 95111098 poba Pseudomonas Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae; 1.070474375 1.079363767 1.045745486 1.03723367 1.077306644 1.084991075 1.019240917 1.028952444 1.034895257 1.026711377 1.032768281 1.05028409 1.03343728 1.007115012 1.037365162 1.083645659 1.079387875 iegAssA16 assa Organic Remediation Other Hydrocarbons NA NA 0.931866658 0.870204644 0.834476141 0.869243261 0.801036996 0.828754797 0.869677028 0.800262416 0.818913471 0.906127735 0.879086107 0.831996088 0.822977361 0.863266758 0.820059966 247543146 chitinase Paenibacillus sp. JDR-2 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 0.922032252 0.846929338 0.94076638 0.858718621 0.790215526 0.835883294 0.901558014 0.827641404 0.858071626 0.877188276 0.889946074 0.83304813 375101255 ara Saccharomonospora cyanea NA-134 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora cyanea; 0.825997497 0.812772011 0.808094224 0.819490264 2387 endopolygalacturonase_fungi Aspergillus niger Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 0.833843275 0.822858631 0.821301911 0.864127797 0.812523953 0.868701283 0.80532411 0.817213712 0.911548464 0.849091774 0.867458003 0.88935524 0.849750573 0.8600051 0.84604432 0.826917119 77460301 atza Pseudomonas fluorescens PfO-1 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 1.304790242 1.262827875 1.307879499 1.273599446 1.280638033 1.347776628 1.277882844 1.282433559 1.273013836 1.276173526 1.257692192 1.252348286 1.272017543 1.253854671 1.27321704 1.275966494 1.328222674 1.280913472 94312991 napa Cupriavidus metallidurans CH34 Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 1.057966956 1.073112447 1.081148506 1.06331017 1.097939541 1.11356029 1.045302643 1.092339205 1.054279331 1.077334089 1.037729446 1.037073953 1.056675953 1.005101098 1.001715204 1.021551437 1.07919627 1.087959768 160917811 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.882304783 0.918280311 0.864713786 0.883610721 0.943955548 0.914241499 0.831275532 0.854410087 0.866960566 0.892977503 0.840605276 0.953193433 0.858658438 0.867370653 0.845962669 0.908181845 0.896338117 0.918134001 11344617 nosz Pseudomonas fluorescens Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.954386254 0.966448236 0.977949751 0.963753202 0.960104542 1.02829932 0.943450862 0.943910685 0.976117641 0.998921049 1.021433013 0.99875826 0.976593019 0.981627773 0.943741709 0.968550341 1.000801145 0.96241918 119536073 badh Nocardioides sp. JS614 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 1.159424726 1.157142361 1.147321552 1.162700965 1.141294966 1.203163431 1.123713936 1.153242552 1.131560154 1.158141317 1.145697517 1.143360581 1.129015014 1.113522266 1.075641809 1.128237642 1.168676924 1.131528926 145220333 sucD Chlorobium phaeovibrioides DSM 265 Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeovibrioides; 1.073696933 1.016011075 0.996554523 1.025846286 0.96468015 0.967204772 0.980720379 1.014509189 1.022894663 0.994802349 0.954724468 1.041534418 0.952382109 0.920384703 0.943491055 0.952322256 0.994230244 1.011379698 338171589 catechol Cupriavidus necator N-1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 0.865971195 0.845256909 0.800387623 0.894714074 0.808495771 0.854346682 0.837619067 0.848475596 0.827102524 0.82154519 0.842354068 0.847000563 0.819038643 0.832334436 0.917702957 0.85829628 262089362 nirk uncultured crenarchaeote Nitrogen Denitrification NA superkingdom:Archaea;phylum:Crenarchaeota; 1.270910761 1.173158792 1.247047215 1.14306005 1.344023098 1.439256428 1.345000008 0.901886284 1.359613765 1.255002917 1.200400239 1.271931244 1.388693909 1.376998401 1.173498423 1.279981928 1.24295559 394771852 terc Actinomyces georgiae F0490 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces georgiae; 1.021640751 0.968684451 0.993989701 1.043424114 0.989358266 1.029242124 1.035086024 1.05809584 1.01740553 0.979120849 0.953819198 0.990981126 0.98636607 0.941573279 0.904723131 0.912238801 1.04560077 0.963793934 333488464 amyA Mycobacterium sp. JDM601 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 1.22856507 1.20196002 1.205305171 1.215893709 1.200722211 1.226900965 1.192698489 1.19635082 1.209774358 1.19787184 1.193323715 1.189149108 1.170630837 1.164270234 1.131406975 1.162484847 1.222060726 1.197088678 126731634 mult_ring_12DiOx Sagittula stellata E-37 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 0.808401073 0.82552136 344317268 xylj Streptomyces sp. SirexAA-E Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 0.878157463 0.877675072 0.792184364 0.792319922 0.829504841 0.847706212 0.786814265 0.843025321 0.759148309 0.825986337 283458825 amyA Rothia mucilaginosa DY-18 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Rothia;species:Rothia mucilaginosa; 1.115874914 1.064703921 1.081162164 1.116385407 1.062482156 1.084941 1.145036507 1.112302169 1.092836526 1.077758863 1.104898897 1.083675932 1.038652785 1.062705183 1.044913257 1.029276862 1.113848928 1.044951599 61807996 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.853206716 0.825160329 0.820647217 0.814202927 0.849710852 0.824395552 0.823044401 0.815196917 0.807879344 0.848247369 0.795042055 0.794720024 0.789000542 0.852713783 0.843684128 220923578 mer Methylobacterium nodulans ORS 2060 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 0.971760806 0.939944085 0.964243238 0.967078007 0.971952906 0.953597977 0.940103886 0.981933955 0.995701641 0.939458539 0.916823402 0.938144658 0.923056282 0.889758126 0.811935866 0.880587737 0.956203339 0.972634874 209965564 mer Rhodospirillum centenum SW Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum centenum; 0.913507425 0.936006387 0.811403216 0.891113693 1.082086711 0.924509512 0.871034833 0.846529757 0.845355872 0.934548037 0.856699569 1.152019183 0.883316657 0.86301436 0.89159525 0.963199489 0.878609835 308753084 cmci Ketogulonicigenium vulgare Y25 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ketogulonicigenium;species:Ketogulonicigenium vulgare; 1.625785533 1.573163484 1.57034443 1.567496935 1.571168564 1.585290231 1.529089868 1.562279058 1.558506027 1.547311106 1.562933861 1.586110228 1.554982793 1.489873056 1.548432201 1.537367403 1.598578202 1.5778428 39964010 alpha_galactosidase_fungi Magnaporthe oryzae 70-15 Carbon Cycling Carbon degradation Other superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 1.009494484 1.054524808 1.025742312 1.016797269 1.046933639 1.046874601 1.017604062 1.009332813 1.026903938 1.072506448 1.048492153 1.056135593 1.025639724 1.025577322 1.010685352 1.00306806 1.010434977 1.024316873 73534217 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.909691515 0.865181971 0.85306148 0.85495933 0.837557833 0.80679077 0.849784862 0.867570867 0.843283501 0.853163058 0.839911143 0.823851394 0.906979163 0.832464102 0.887989639 0.847513238 116099534 ccmL Lactobacillus brevis ATCC 367 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus brevis; 1.015858534 0.940249042 0.970710567 1.057390111 1.034470685 0.995278036 0.98312452 1.002758208 1.02493378 0.993567631 1.002164485 1.037664453 0.976834891 0.932585425 0.933257209 0.968740661 1.046189075 0.981626248 62426151 hbh Brevibacterium linens BL2 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Brevibacteriaceae;genus:Brevibacterium;species:Brevibacterium linens; 0.897575896 0.902426925 0.94468634 0.937192838 0.864941467 0.902677122 0.865421546 0.889938267 0.894191163 0.878856007 0.864043314 0.897089989 0.884644831 0.899496293 0.864014785 119716042 amyA Nocardioides sp. JS614 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 1.308424484 1.32085831 1.307606169 1.289413462 1.258817492 1.329766718 1.229933308 1.264059563 1.26366896 1.274921243 1.297582742 1.290201622 1.243629635 1.283695048 1.260071363 1.281762027 1.293521687 1.289648268 83749300 dehh Ralstonia solanacearum UW551 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 1.003086583 0.987635428 1.016403101 1.05621392 1.032173136 1.039712781 1.068965487 1.057911374 1.036881953 1.010970525 1.034449985 1.02927857 1.009953606 0.971963882 0.968902898 0.959978043 1.046940764 1.014079074 326412275 tktA Polymorphum gilvum SL003B-26A1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;species:Polymorphum gilvum; 0.851253604 0.90674992 0.843910473 0.868380611 0.847011911 0.871984685 0.861631693 0.829794197 0.869043804 0.861414003 0.846463205 0.90869681 0.791470695 0.864386891 0.77990921 0.843250302 0.832296387 112463277 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.129420192 1.105822765 1.028762584 1.072823855 1.042450141 1.070006768 1.056993398 1.059302938 1.045727489 1.038198883 0.995551056 1.082885602 1.040554368 1.105029449 1.026635644 1.033250933 1.101968483 1.037028731 39649726 nhh Rhodopseudomonas palustris CGA009 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 1.069800727 1.021058621 1.08440429 1.051027742 1.037098095 1.022982003 1.06896148 1.063515546 1.04462277 1.022925712 1.115534771 1.036889904 1.014669072 0.964842934 1.00384076 1.004472864 1.038914291 0.993174479 84516855 phn Loktanella vestfoldensis SKA53 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Loktanella;species:Loktanella vestfoldensis; 0.905818353 0.88336984 0.862483765 0.949687131 0.902146452 0.853823237 0.925802529 0.97386629 0.931550622 0.855220572 0.845285004 0.884059345 0.873618829 0.809976056 0.809746471 0.850942785 0.82641768 288345549 alkb Frankia sp. EUN1f Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 1.263045682 1.27494285 1.255023508 1.227584434 1.234700678 1.275934109 1.210638146 1.212564086 1.225068912 1.223993028 1.228015466 1.241113423 1.218931649 1.204162318 1.218775156 1.24682527 1.284234078 1.247073127 119695411 terc Mycobacterium sp. KMS Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 1.061121422 1.109225485 1.025153572 1.084561438 1.081925466 1.100095896 1.013886609 0.996795307 1.025157444 1.028828312 1.009655914 1.015336847 1.023333054 1.02538312 0.993879256 1.016280287 1.083781117 1.104849839 299068532 dehh Ralstonia solanacearum CMR15 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 1.000215877 1.002921678 0.996689389 1.007999679 0.931010052 1.021627756 0.941137322 1.028647159 1.004136902 0.999505664 0.971840391 0.984662794 0.910471807 0.97666105 0.877211618 0.963942429 0.998673186 1.006906693 329849932 arsc Asticcacaulis biprosthecum C19 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis biprosthecium; 1.115115215 1.121751789 1.087556941 1.08719232 1.053263518 1.120285412 1.06555037 1.070639207 1.085381372 1.087461222 1.091944008 1.074974045 1.067938954 1.070439219 1.067844724 1.055356071 1.109870813 1.119042606 119490142 p450aro Neosartorya fischeri NRRL 181 Organic Remediation Aromatics polycyclic aromatics superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 0.784181933 0.810927188 0.838151336 0.869071176 0.876447134 0.795315854 0.816511173 0.836725546 0.850526418 0.840923685 0.820939098 0.928534791 0.805935507 0.844417562 386852497 nira Actinoplanes sp. SE50/110 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes; 1.623093661 1.546738608 1.561078578 1.55517428 1.523083915 1.55581336 1.459304038 1.54266803 1.542692606 1.536934016 1.549910141 1.549247009 1.521986743 1.515035314 1.502899127 1.530569424 1.577918164 1.530366684 118170486 nirb Mycobacterium smegmatis str. MC2 155 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 1.054487633 1.112179677 1.011896514 1.07638227 1.063950756 1.090897632 1.055112055 1.042979241 1.040601278 1.040127263 1.057388432 1.067321278 1.041841859 1.012681492 0.998578537 1.04395481 1.064402717 1.02870457 298291575 arsc Starkeya novella DSM 506 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Starkeya;species:Starkeya novella; 1.050322878 1.017825103 1.05883248 1.05492657 1.015087913 1.012111484 1.018868187 1.02277581 1.02162618 1.02965308 0.999768271 1.034201743 1.018889201 0.997943191 1.017151094 1.02665023 1.067206064 1.018783652 320008773 cellobiase Streptomyces flavogriseus ATCC 33331 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces flavogriseus; 0.997554013 0.973441949 0.98220554 0.974917014 0.999066556 0.987810246 1.001574161 0.974403089 0.970029756 0.97009598 0.936095264 0.947339152 0.953147752 0.93155002 0.866609157 0.931802199 0.968502576 1.011534424 270334262 ppk Prevotella bergensis DSM 17361 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella bergensis; 0.806597987 0.822284976 0.876635753 0.782849551 0.808643885 0.855170943 0.909389127 0.799971057 0.850494551 403646205 mdld Gordonia sp. KTR9 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia; 0.801380538 0.802278168 161383874 phn Phaeobacter gallaeciensis 2.10 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 1.187208246 1.138999714 1.095199288 1.105296793 1.118720565 1.131095338 1.087479259 1.079009977 1.104525195 1.096493396 1.094345335 1.101707162 1.131167753 1.117193814 1.085396448 1.107416361 1.11970843 1.109102113 302698007 p450aro Schizophyllum commune H4-8 Organic Remediation Aromatics polycyclic aromatics superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 0.890114381 0.838721594 0.870056696 0.98478411 0.930285787 0.920036658 0.976500274 0.948115736 0.929410882 0.87389076 0.846675186 0.948782285 0.879531528 0.82066686 0.848619289 0.875815542 0.932457976 0.873864281 159039501 xyla Salinispora arenicola CNS-205 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora arenicola; 0.99284184 1.06641838 0.992586565 1.064264878 1.016461711 1.000242762 1.024857762 0.948913377 1.011014117 0.984076689 0.98169868 1.038721926 1.005386941 0.957718722 0.937407509 0.971847304 0.996998421 1.024193424 379988921 dsrB uncultured bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.978272508 1.045403852 0.968687903 1.064254796 0.919456655 0.876394917 0.945207937 0.995872703 1.010930464 0.899128588 0.922621209 1.006443802 0.914065776 0.858214587 0.951571083 0.931488611 0.997988615 0.887815116 284031583 acetylglucosaminidase Kribbella flavida DSM 17836 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Kribbella;species:Kribbella flavida; 1.356297985 1.293203892 1.282085418 1.284658991 1.301801136 1.3606876 1.283709063 1.278236635 1.290224929 1.342252804 1.287600586 1.302216438 1.303517991 1.319153061 1.298537742 1.280592263 1.306159479 1.297316412 261205350 cellobiase Ajellomyces dermatitidis SLH14081 Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces dermatitidis; 0.881128229 0.933997262 0.899304431 0.864814273 0.872850201 0.897375681 0.890502818 0.858618909 0.898075558 0.912779094 0.877003774 0.902876549 0.902641662 0.85634005 0.851539907 0.888539804 0.93713577 0.973915139 71846680 urec Dechloromonas aromatica RCB Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Dechloromonas;species:Dechloromonas aromatica; 0.912963899 0.893531074 0.890736682 0.905170128 0.838202653 0.835404227 0.864778496 0.853893731 0.983949279 0.897169683 0.910760887 0.882821398 0.829143203 0.865416281 0.831662244 0.875776624 0.897783977 0.891079296 28542591 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.860550231 0.945734089 0.894270634 0.909527028 0.962120684 0.890270777 0.923603688 0.854199474 0.879089974 0.908231896 0.852943658 0.876615157 0.900139815 0.916984278 0.962405648 0.863009135 0.900675167 0.934150356 72121507 vana Ralstonia eutropha JMP134 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 1.082158318 0.977985982 0.958433206 0.962471117 1.006618069 1.116750825 0.950694994 0.931145104 0.93995405 0.949999147 0.97156925 1.020482606 0.926686181 0.923214611 0.849181463 0.953609178 1.05221321 0.973203034 226939539 cysI Laribacter hongkongensis HLHK9 Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Laribacter;species:Laribacter hongkongensis; 0.897765676 0.92178709 0.966865806 0.960347343 0.859980845 0.9204607 0.910825117 0.930271632 0.915096222 0.891062014 0.908312942 0.937973214 0.901311279 0.835728967 0.861249283 0.876347516 0.939567742 0.897696755 398979486 one_ring_12diox Pseudomonas sp. GM25 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.85280046 0.866107692 0.825999489 0.905677792 0.854238448 0.85826514 0.841493251 0.870325807 0.875634685 0.870244658 0.828697769 0.867607368 0.886386077 386817333 chitinase Thiothrix nivea DSM 5205 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Thiotrichaceae;genus:Thiothrix;species:Thiothrix nivea; 0.926383576 0.937532678 0.902887885 0.858406747 0.915793437 0.925994013 0.836560931 0.896553722 0.824400438 0.864992987 0.858008383 0.885238131 0.878937951 0.84351699 0.839871386 0.894978813 0.942291679 158111101 tehb Frankia sp. EAN1pec Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 1.415091586 1.414063207 1.392489131 1.382771918 1.376230946 1.434436272 1.350127547 1.385484779 1.365109669 1.359677327 1.369467107 1.385881914 1.360193429 1.363150577 1.313925962 1.374487721 1.410015141 1.376375846 94983091 silicon_transporter NA Metal Homeostasis Silicon Transport 0.819913069 0.851292433 0.838905038 0.881049347 0.844671498 0.810373373 0.805001403 0.817788518 0.83892198 37547930 pcpe Arthrobacter chlorophenolicus Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 0.809855031 0.783641344 0.830237941 0.898562579 0.84982443 0.812126654 0.791705919 0.836962381 392420901 catechol Pseudomonas stutzeri CCUG 29243 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 1.205016365 1.2081757 1.180316914 1.241734095 1.226359551 1.151809264 1.226224928 1.21137869 1.178255878 1.13658246 1.184176631 1.212979965 1.172666771 1.096108261 1.170917303 1.13056445 1.154614011 1.133090222 335339875 ara Halopiger xanaduensis SH-6 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halopiger;species:Halopiger xanaduensis; 0.765118424 0.851518432 0.794321949 0.813146064 0.795412689 0.811762267 0.854055365 0.752248585 0.794419951 0.815961828 0.841502008 319442111 cysJ Corynebacterium variabile DSM 44702 Sulfur Reduction NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium variabile; 0.932303581 0.902369732 0.946322306 0.964785009 0.890329873 0.922290233 0.864278706 0.911831174 0.972261196 0.934280608 0.923564292 0.934942164 0.902354259 0.852952711 0.886987889 0.869910612 0.979585455 0.921328291 386393978 terc Desulfovibrio sp. U5L Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 0.871486407 0.84441924 0.916387841 0.927266955 0.889752125 0.892854215 0.862859898 0.874967992 0.894134441 0.889290848 0.878455403 0.942417452 0.842477125 0.814914862 0.849754649 0.897929641 0.850739578 319790380 sucD Thermovibrio ammonificans HB-1 Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Desulfurobacteriaceae;genus:Thermovibrio;species:Thermovibrio ammonificans; 0.952405186 0.945790128 0.914319822 0.956374308 0.903128554 0.919331753 0.83384653 0.890132282 0.921689658 0.923707092 0.910014767 0.883639545 0.870031945 0.895199121 0.886898222 0.895382922 0.940149161 0.960887117 229380135 PRI Oxalobacter formigenes OXCC13 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Oxalobacter;species:Oxalobacter formigenes; 0.813050323 0.832219694 0.854555801 0.793091756 0.882124666 0.857849017 0.83100188 0.867278971 0.815852666 0.804578588 345864396 SoxB endosymbiont of Tevnia jerichonana (vent Tica) Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;species:endosymbiont of Tevnia jerichonana; 0.821885865 0.8514165 0.862305559 0.863690942 0.894239889 0.899113512 0.830974663 0.842707463 0.842445324 0.862519051 0.82853237 0.849790495 0.807710509 0.808732087 94553904 poba Deinococcus geothermalis DSM 11300 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus geothermalis; 1.020535254 1.004382791 0.982390916 0.987474884 0.997784567 1.065975956 0.982512455 1.030583918 0.979192789 1.053501562 1.017144592 1.026577259 0.972885996 1.106451344 1.033626131 0.986601745 1.03154104 1.048466529 259418612 phn Silicibacter sp. TrichCH4B Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 1.442038862 1.407573624 1.427037678 1.462797665 1.430299047 1.42511791 1.421830668 1.457533906 1.41903931 1.388599518 1.411040942 1.455861552 1.410299193 1.382269353 1.42808711 1.429063422 1.398273052 1.365846738 151279910 FBPase Janthinobacterium sp. Marseille Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Janthinobacterium; 0.867299713 0.870761041 0.919167716 0.982914231 0.871579588 0.890343476 0.889344615 0.937154112 0.918860787 0.890974612 0.866862365 0.944929128 0.873333668 0.911272603 0.83953856 0.902984812 0.857441094 0.903522885 156108619 acetylglucosaminidase Bacteroides ovatus ATCC 8483 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides ovatus; 1.178459583 1.100100858 1.121512603 1.068673991 1.09864666 1.109635658 1.07039112 1.12178279 1.08663572 0.996946101 1.166439977 1.078548542 1.020209838 1.040723947 1.043265104 1.073266165 1.036961525 1.134947882 322511796 dsra delta proteobacterium SCGC AAA240-N20 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 0.824816435 0.829133216 0.839601464 0.886239524 0.836073654 0.832932866 0.911297487 0.857062706 0.871387263 0.828226611 0.865801957 0.876902284 0.852315818 0.81186297 0.865494569 0.886502482 0.88378302 0.857670958 83852318 pgk Oceanicaulis sp. HTCC2633 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Oceanicaulis; 0.804866702 0.8375161 91699573 dehh109 Polaromonas sp. JS666 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 1.241618803 1.114227165 1.140693669 1.186181705 1.121940136 1.148454139 1.084169512 1.121755175 1.147384711 1.107853666 1.132873819 1.159564887 1.129479038 1.097595932 1.094452483 1.119859127 1.179008424 1.091580409 110679207 PRI Roseobacter denitrificans OCh 114 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter denitrificans; 0.895528018 0.921854137 0.884084095 0.895624055 0.858568515 0.876613264 0.838955917 0.863080284 0.854867397 0.897864619 0.832459429 0.86050726 0.801195685 0.91766272 0.881747273 0.894301325 0.910717272 225020608 amyA Corynebacterium matruchotii ATCC 33806 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium matruchotii; 1.445652898 1.389789987 1.392573307 1.430873811 1.390384563 1.43490824 1.404308438 1.426245378 1.39758874 1.37751112 1.380699446 1.410390426 1.364386774 1.354923339 1.376637464 1.386959875 1.427611948 1.374728887 119882220 endochitinase Salinispora arenicola CNS205 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora arenicola; 0.91986636 0.947633594 0.972905363 0.910674429 0.865207798 0.91809834 0.85852356 0.897608859 0.927475569 0.920520007 0.890933034 0.920752435 0.865855472 0.89465009 0.849818864 0.876208547 0.947328307 0.97278226 328810859 ara Verrucosispora maris AB-18-032 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Verrucosispora;species:Verrucosispora maris; 0.924625712 0.930455194 0.883682251 0.953682087 0.838623437 0.895980185 0.814004711 0.858180733 0.934099663 0.900703433 0.852223113 0.846022767 0.904796957 0.866533611 0.849913101 0.935353804 0.934560865 153010072 PRK Ochrobactrum anthropi ATCC 49188 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum anthropi; 0.920879599 0.861661711 0.820115083 0.853181699 0.841718984 0.846950287 0.833531603 0.832074955 0.851508006 0.822225829 0.885157405 0.871054958 0.841005533 0.838127254 0.843315498 0.8544034 377527685 cellobiase Gordonia sputi NBRC 100414 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia sputi; 1.025889734 1.013077908 1.017867887 1.015020163 1.047181359 1.068976237 1.055396371 1.061884288 1.002169206 1.024964599 1.016333826 1.011915807 1.03074108 1.018264803 1.001642774 1.00118937 1.038967269 1.011521815 229593278 ppx Pseudomonas fluorescens SBW25 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 1.041517724 1.049869954 1.058669236 1.091545702 1.097472841 1.092535002 1.119667282 1.105819567 1.144993101 1.062962236 1.056542418 1.073647694 1.053416724 1.021366618 0.98712512 1.024609165 1.038781561 1.045769544 293613363 beta_agarase Coraliomargarita akajimensis DSM 45221 Carbon Cycling Carbon degradation Agar superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;order:Puniceicoccales;family:Puniceicoccaceae;genus:Coraliomargarita;species:Coraliomargarita akajimensis; 0.859042491 0.861137298 0.879808483 0.89066071 0.895560836 0.845824174 0.887384219 0.889150376 0.874253713 0.883870404 0.859625356 0.898848414 0.807860687 0.843400112 0.823357759 0.87719648 0.81398672 0.859247319 283808369 amyA Kribbella flavida DSM 17836 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Kribbella;species:Kribbella flavida; 1.087510234 1.091294214 1.075641962 1.106967525 1.078118463 1.105258285 1.088298619 1.093271739 1.108118361 1.064473895 1.060776219 1.070417262 1.05198663 1.03773838 0.998065084 1.089982834 1.05841932 1.069199264 407753295 oxdb Serratia plymuthica A30 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia plymuthica; 1.026458464 1.084062858 1.022787735 1.103421534 1.046531142 1.028490335 1.041268281 1.02554552 1.019017237 1.051374064 1.013299097 1.059592198 1.067800439 0.989798841 1.013911862 1.015049357 1.10854044 0.994060313 365818710 pcpe Delftia acidovorans Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia; 1.166048214 1.142491595 1.144965045 1.144727202 1.145250458 1.144416255 1.116087032 1.159843312 1.115928932 1.129309548 1.119010814 1.12691802 1.081524951 1.111542163 1.078148251 1.086691883 1.167851305 1.164251511 294326601 ppk Streptomyces clavuligerus ATCC 27064 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces clavuligerus; 0.814327874 0.820536115 0.89946384 0.817411855 0.833881289 0.818058637 0.859964505 0.857777758 0.783729488 0.840124953 0.841730455 0.846824143 0.790481216 0.819891049 0.843977229 145297884 arylest Aeromonas salmonicida subsp. salmonicida A449 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas salmonicida; 0.811143641 0.794933985 0.82239789 0.8442584 177839347 mer Opitutus terrae PB90-1 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 1.377035293 1.325650289 1.324738692 1.349268262 1.329132254 1.373942612 1.313066467 1.339403085 1.365335479 1.33485534 1.304221114 1.308163168 1.31762553 1.28986593 1.270455574 1.304549061 1.382508407 1.340641242 63003133 one_ring_12diox uncultured soil bacterium Organic Remediation Aromatics Other aromatics superkingdom:Bacteria; 1.122494749 1.093564305 1.139479604 1.123460883 1.124968335 1.132654174 1.129543887 1.128629721 1.114158839 1.102449097 1.105759759 1.089353133 1.071912336 1.054939434 1.038090252 1.035810088 1.108123549 1.106074313 18182574 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 0.907956356 0.926170255 0.955558734 0.952244575 0.916094241 0.91533308 0.890234267 0.916312489 0.946847889 0.917468661 0.923815945 0.918662761 0.941460908 0.917941363 0.867272736 0.908303368 0.959077353 0.962108727 154154495 alkj Parvibaculum lavamentivorans DS-1 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Parvibaculum;species:Parvibaculum lavamentivorans; 0.840186423 0.910820602 0.985640729 0.940373676 0.875457144 0.940762155 0.919556517 0.922477049 0.996384481 0.966402463 0.964201271 0.966468824 0.866251777 0.875580385 0.999793354 0.967755033 0.965901222 0.968953688 342316518 aoxb uncultured bacterium Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 1.272359911 1.266052 1.200904353 1.224234236 1.211631325 1.246562314 1.217162192 1.235445543 1.213121533 1.239449179 1.199872088 1.236643028 1.176899159 1.213855533 1.167769182 1.212215364 1.238781336 1.279707898 304353608 phn Pantoea sp. aB Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 1.022549292 1.006979715 0.927106465 1.053454759 0.95276537 0.955115168 0.943971885 0.970343732 0.982671158 0.978120603 0.946378517 0.985608022 0.927132166 0.908424594 0.898234357 0.95238591 1.013295573 0.986276387 302409720 exopolygalacturonase_fungi Verticillium albo-atrum VaMs.102 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticilium;species:Verticillium albo-atrum; 0.821436758 0.798340458 0.965361845 0.843214063 0.901471841 0.893114527 0.903413209 0.881641453 0.793006105 0.891406374 0.867452257 0.84483612 0.884438835 0.88452041 0.811113918 0.861902154 0.867231093 303293278 FBP_aldolase Ahrensia sp. R2A130 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ahrensia; 0.896770281 0.933602703 0.854985324 0.921875103 0.878583786 0.897725923 0.88697179 0.782105812 0.915715832 0.890532157 0.90449634 0.805629864 0.863871543 0.826925257 0.858997038 0.891256295 0.907587859 89333434 dmsa Desulfitobacterium hafniense Y51 Organic Remediation Others NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 1.034587458 0.930084912 0.887274013 0.981373684 0.884680368 0.795479692 0.836070309 0.786585033 0.835130739 39936617 arsc Rhodopseudomonas palustris CGA009 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 1.123174865 1.15710701 1.107422694 1.124219631 1.118755017 1.139114878 1.090836074 1.070640696 1.096585994 1.145654974 1.108325979 1.135840286 1.102115434 1.08181875 1.059123498 1.10166422 1.12882691 1.121208569 151359036 xylanase Kineococcus radiotolerans SRS30216 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Kineosporiaceae;genus:Kineococcus;species:Kineococcus radiotolerans; 0.97868346 0.968240472 0.977455383 0.998266782 0.922107555 0.985547425 0.939211602 0.982346067 0.973751512 0.971668962 0.961890095 0.98504654 0.940172751 0.938311908 0.918919625 0.913092213 0.967024592 0.996536311 214045433 hbh Roseobacter sp. GAI101 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 0.867532018 0.882534132 0.850848974 307551403 dsra Vulcanisaeta distributa DSM 14429 Sulfur sulfite reduction NA superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Vulcanisaeta;species:Vulcanisaeta distributa; 1.035493337 0.982443339 1.003529769 1.057233433 0.998667116 0.972949929 0.955119399 0.982876748 1.031480703 0.970962797 0.972199616 1.007146948 0.97886787 0.931453806 0.915318639 0.960908327 0.990240295 0.980745562 388065109 amyA Gardnerella vaginalis 6119V5 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Gardnerella;species:Gardnerella vaginalis; 0.764685111 0.870140182 313351 cysJ Thiocapsa roseopersicina Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiocapsa; 1.19857208 1.163502896 1.20349931 1.187614958 1.195936634 1.193962935 1.201187524 1.214470436 1.186336768 1.17848945 1.18279215 1.185208948 1.135053358 1.120398377 1.104333324 1.148256027 1.179795355 1.171957597 381357447 nitrilase Bradyrhizobium sp. S23321 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.908610675 0.85126271 0.88275798 0.891766452 0.86154096 0.874181643 0.845733002 0.865246683 0.902699053 0.822887082 0.796788228 0.857023656 0.806156434 0.91778307 0.918549904 223585870 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.982590783 0.976225895 1.003288054 0.996766136 1.011922058 1.008957251 0.995953458 0.986619567 1.006221763 0.946683237 0.999973735 0.990302351 0.952777005 0.906936834 0.934282781 0.921942253 1.009250616 1.009658968 77379107 mer uncultured bacterium Metal Homeostasis Mercury Detoxification superkingdom:Bacteria; 0.826429717 0.830207728 0.793689738 0.827628224 0.850839244 0.837445418 148273952 terc Clavibacter michiganensis subsp. michiganensis NCPPB 382 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Clavibacter;species:Clavibacter michiganensis; 1.091401162 1.090710159 1.077628682 1.08996799 1.091911266 1.10139827 1.082040489 1.09691765 1.07450514 1.098457075 1.039576543 1.117022173 1.066786048 1.061762958 1.044843386 1.035586268 1.055989637 1.08189499 295411516 alkk Kyrpidia tusciae DSM 2912 Organic Remediation Others NA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Kyrpidia;species:Kyrpidia tusciae; 1.054050622 0.990014485 0.930964301 1.029299866 1.013176994 1.029210789 0.920094268 0.941209582 0.992003567 0.975896279 0.889097087 0.958843651 0.916398891 0.92407477 0.968695405 1.024934504 1.230186595 1.0029723 115511388 alkb Mycobacterium sp. TY-6 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 0.992668884 1.02240939 1.010819622 1.080898697 0.990077014 1.091669945 0.990041063 0.99919887 1.02387329 0.987486356 1.008493338 1.049519869 0.976824256 0.954983532 0.971280035 1.003723935 1.04778036 0.989812052 386845860 mannanase Actinoplanes sp. SE50/110 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes; 1.242019621 1.232337699 1.232623187 1.20756123 1.242909713 1.235204256 1.206081478 1.213524691 1.221915104 1.233702762 1.232384386 1.248814724 1.206207581 1.233193738 1.233918695 1.222210478 1.202195875 1.246465972 46580503 codh Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio vulgaris; 0.804503553 0.789533517 0.811719173 0.832875053 0.808886612 169866037 exoglucanase Coprinopsis cinerea okayama7#130 Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 0.867698905 0.809738762 0.824294816 0.871070688 0.872348564 0.867533273 0.832277799 0.885968761 0.920662608 0.825011466 0.888299067 0.797701511 0.879115201 0.83080674 333919340 amyA Amycolicicoccus subflavus DQS3-9A1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Amycolicicoccus;species:Amycolicicoccus subflavus; 0.900972507 0.966546281 0.903619687 0.960413246 0.97594021 0.948175311 0.902071446 0.888064874 0.943041757 0.904893382 0.9205891 0.929625427 0.91597956 0.912151127 0.960455861 0.9157284 0.955374888 380734665 badh Corallococcus coralloides DSM 2259 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Corallococcus;species:Corallococcus coralloides; 1.080213076 1.057426844 1.021582767 1.06426915 1.072625238 1.066486535 1.019184123 1.031079685 1.033161896 1.046555445 1.042278936 1.071861479 1.066922139 1.034510908 1.052122935 1.014627328 1.073224461 1.073255532 347818421 ara Verminephrobacter aporrectodeae subsp. tuberculatae At4 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter aporrectodeae; 1.005286992 0.978470272 0.949038742 0.946918029 0.904586686 0.965021791 0.874847881 0.921689837 1.006377343 0.972690821 0.93318622 0.967639262 0.878919163 0.906574712 0.865604453 0.892125007 0.952181812 1.004582142 110808296 dsrB uncultured Desulfotomaculum sp. Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum; 0.839798295 0.843871601 0.901067575 0.836896745 0.842388993 0.851142456 0.843471013 0.864514832 0.833587544 0.865976721 0.871936382 0.843042944 0.804330824 0.837328289 0.830081482 0.867172513 0.83018795 189347907 AcnA Chlorobium limicola DSM 245 Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium limicola; 1.179488909 1.168169853 1.12184156 1.168539161 1.148374466 1.148131741 1.125909324 1.167852318 1.166790126 1.11673771 1.127263934 1.148530469 1.120259995 1.101033698 1.10854809 1.127024776 1.173642056 1.150166546 222353926 aps_apra uncultured bacterium Sulfur adenylylsulfate reductase NA superkingdom:Bacteria; 1.357703963 1.310087917 1.324463349 1.338446778 1.328596546 1.344159678 1.313867963 1.348710764 1.317568956 1.309851769 1.303473258 1.337816987 1.277632915 1.294693313 1.298807581 1.298682761 1.335071243 1.303449331 357387348 gdh Kitasatospora setae KM-6054 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Kitasatospora;species:Kitasatospora setae; 1.33659378 1.300548872 1.297817125 1.303498178 1.299651724 1.32446711 1.286474435 1.287817861 1.28344531 1.273247492 1.297142555 1.293389961 1.293913131 1.269986525 1.275745317 1.3102517 1.327823951 1.291766555 171465194 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.140527199 1.091162791 1.073402837 1.086253069 1.064954141 1.093720878 1.057626885 1.071572922 1.101327391 1.065074281 1.071285636 1.088490423 1.059408158 1.035940999 1.041560113 1.066855789 1.103188235 1.088398373 145306288 mer Salinispora tropica CNB-440 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora tropica; 1.170946883 1.214618291 1.171855211 1.184106884 1.217011449 1.250444744 1.164380074 1.147549202 1.146991738 1.205032477 1.16997401 1.164987483 1.203790029 1.224404346 1.20913423 1.195072571 1.23566768 1.201967911 383452427 amyA Corallococcus coralloides DSM 2259 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Corallococcus;species:Corallococcus coralloides; 0.878976653 0.970374466 0.898299994 0.840539083 0.891221911 0.873614551 0.861137609 0.915110739 0.923383606 0.912667936 0.876387686 0.87761349 0.897858512 0.882329496 0.87224704 0.876052388 0.875781581 0.881688841 126360302 toma Pseudomonas putida GB-1 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 1.226417331 1.197648435 1.175013137 1.205236869 1.196334116 1.220320114 1.16720833 1.17618873 1.203253483 1.190074219 1.18591362 1.1809498 1.128150704 1.144270983 1.136157047 1.143630287 1.199521006 1.222073889 340027047 arra uncultured bacterium Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 0.911843914 0.894160385 0.922347535 0.959133032 0.928879168 0.907344875 0.923478346 0.958831261 0.917128426 0.922194284 0.90574706 0.944919336 0.876949078 0.886788665 0.901001656 0.902427848 0.859318418 0.91590414 323358599 amyA Microbacterium testaceum StLB037 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Microbacterium;species:Microbacterium testaceum; 0.887125088 0.914254094 0.890442404 0.925201149 0.897625212 0.839786944 0.876473309 0.859154365 0.874797721 0.842713729 0.810514958 0.914252236 0.894469791 0.818216342 0.883822428 0.873575609 0.898858244 0.867229452 119455167 CsoS1_CcmK Lyngbya sp. PCC 8106 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Lyngbya; 0.906314762 0.825067529 0.85847092 0.894029411 0.843096562 0.8366229 0.855005253 0.837057566 0.878660614 0.896750376 0.816897862 218774926 lactase_fungi Aspergillus oryzae Carbon Cycling Carbon degradation Lactose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 0.781499667 0.813726513 0.923670701 0.811034364 0.786973608 319780279 urec Mesorhizobium ciceri biovar biserrulae WSM1271 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium ciceri; 0.934235779 0.983614999 0.94347719 0.923529081 0.924592902 0.881126587 0.950013935 0.891730369 0.952371391 0.949600739 0.940546213 0.962953061 0.910023558 0.87153359 0.860797642 0.880627041 0.896499405 0.947094147 114800413 nirb Hyphomonas neptunium ATCC 15444 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Hyphomonas;species:Hyphomonas neptunium; 0.979827662 0.97519596 0.926213586 0.995499115 0.925940984 0.959408878 0.94776657 0.973519668 0.955876177 0.960954405 0.945189744 0.964508741 0.938415631 0.913438328 0.894819904 0.90696242 1.004512615 1.006869216 294814741 chitinase Streptomyces clavuligerus ATCC 27064 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces clavuligerus; 1.044664739 0.997792758 0.991672009 1.033450541 0.968062436 1.018292623 0.971866559 0.9956499 1.011558056 0.980777984 0.998993642 1.019806565 0.987238763 0.987744366 0.939314113 0.978962743 1.035806299 0.998046428 333898686 ppx Pseudomonas fulva 12-X Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fulva; 1.036735653 1.019175611 0.989637582 1.018177743 1.024358426 1.020936251 1.039943022 1.052838635 1.018585616 1.017402978 1.02122199 1.020945753 0.988571618 0.935381715 0.956611462 0.901619691 1.002628342 0.986701384 88864660 linb Jannaschia sp. CCS1 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Jannaschia; 0.80249454 0.860907388 0.833996692 0.816574388 0.892843362 0.823590698 0.779069063 0.912101499 0.857972331 0.802828556 0.862515444 0.877313409 0.828193521 0.89801793 255269455 ara Bryantella formatexigens DSM 14469 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;species:Marvinbryantia formatexigens; 0.779627319 0.802953566 0.80556984 0.819737722 0.832785717 0.838247451 0.835416632 0.826474767 0.845372213 357416391 cysJ Pseudoxanthomonas spadix BD-a59 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Pseudoxanthomonas;species:Pseudoxanthomonas spadix; 0.874670505 0.8341119 0.840570099 0.880291288 0.873401582 0.828842323 0.881723254 0.853293242 0.770597901 0.802323622 0.870281359 0.848225996 0.856304527 0.869216455 390171757 arsc bacterium Lb Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Chloroflexi;class:Thermomicrobia;order:Sphaerobacterales;family:Sphaerobacteraceae;genus:Nitrolancetus;species:Nitrolancetus hollandicus; 1.01610023 0.980523796 0.975105418 1.012215572 1.007326157 0.972209193 1.00840594 1.008745836 1.018589168 0.9410679 0.983551896 0.983508013 0.91271057 0.914217863 0.852672578 0.923300007 1.018017213 1.02324951 158316921 amyA Frankia sp. EAN1pec Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 1.160756765 1.144953963 1.112382081 1.15412414 1.108583792 1.158973997 1.111085276 1.123367133 1.135195269 1.130572002 1.102946633 1.119652923 1.08307353 1.106326943 1.075392627 1.128113377 1.155732671 1.145259593 302657364 protease_cysteine_fungi Trichophyton verrucosum HKI 0517 Carbon Cycling Carbon degradation protein superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Arthrodermataceae;genus:Trichophyton;species:Trichophyton verrucosum; 0.990416001 0.949488824 1.027022621 0.94299024 0.910975067 0.911856075 1.017805629 0.951832523 0.993979561 0.921650883 0.92460317 0.923545251 0.971241396 0.891713098 1.033270113 320134834 cda Actinomyces sp. oral taxon 171 str. F0337 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 171; 1.039270478 1.006748902 1.011085742 1.032851197 1.02535169 1.07366922 1.029548901 1.017805567 1.027408565 1.051345472 1.03648284 1.028817036 1.027207331 0.982687611 0.995316015 0.996647397 1.082302631 1.036291346 302395331 endoglucanase Butyrivibrio proteoclasticus B316 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Butyrivibrio;species:Butyrivibrio proteoclasticus; 1.004547786 1.004324892 0.90537985 0.976355053 0.97234174 1.007589272 0.964914616 0.989586898 1.019100812 0.977742806 0.930569131 0.940556266 0.921171471 0.956937522 0.944012045 0.889867584 0.971685983 1.072831779 312196690 cdh Frankia sp. EuI1c Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 0.971547148 0.992371302 0.936296211 0.946276501 0.912356436 1.020805091 0.880954318 0.929806204 0.953901895 0.976879807 0.958988279 0.908534845 0.900282736 1.036668089 0.860158085 0.930112811 0.976375841 0.999259197 163743279 ppx Phaeobacter gallaeciensis 2.10 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 1.111139763 1.084068209 1.062226237 1.120434737 1.083429864 1.095952185 1.055842187 1.099426217 1.070243101 1.063834165 1.05553505 1.089191737 1.061587176 1.059812186 1.060221657 1.082185395 1.097691588 1.082695656 300788798 ben_bcla Amycolatopsis mediterranei U32 virulence NA NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 1.064847098 1.056315655 1.21856611 1.064787511 1.016442536 1.034351601 0.981101752 1.050768353 1.072628118 1.03361151 0.997020742 1.053476849 1.003045013 1.024795455 1.033255175 1.019591032 1.086241297 1.058805729 169793548 napa uncultured bacterium Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria; 0.981930164 0.873653968 0.804411579 0.888971701 0.814215786 0.82641841 0.828770551 0.914574551 0.964670446 0.807425211 0.890916349 0.823649558 0.929978538 0.932056803 11036960 phenol_oxidase Lentinus sajor-caju Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Lentinaceae;genus:Lentinus; 1.016867094 0.945393322 1.004932429 1.048439884 1.074769845 0.977324235 0.996943757 1.036182844 1.035400736 0.958738287 0.973093021 1.120565148 1.013587757 0.898008046 0.936307817 1.041436414 1.016875919 0.990514516 359304448 fthfs Arthrobacter globiformis NBRC 12137 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter globiformis; 0.841696377 0.911299379 0.930941847 0.833065892 0.917578917 0.893174935 0.850137011 0.821565276 0.825608945 0.808636953 0.825296813 0.842101218 1.075043339 0.888827223 357031000 ppx Gluconobacter morbifer G707 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconobacter;species:Gluconobacter morbifer; 1.104494029 1.020033052 1.10071503 1.053102052 1.071521474 1.068563418 1.076750483 1.069153982 1.055204423 1.061783101 1.037904466 1.044360282 1.008833839 1.011445326 0.991968272 1.016001297 1.062678268 1.038902443 88696575 endochitinase Bionectria ochroleuca Carbon Cycling Carbon degradation Chitin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Bionectriaceae;genus:Clonostachys; 0.892257712 0.88527903 0.891944213 0.911563909 0.904223606 0.92507741 0.872899958 0.854801159 0.913403195 0.910825794 0.868437616 0.878972903 0.878148309 0.898008416 0.943180104 0.905498674 0.966966847 0.927304192 221083076 nitrilase Variovorax paradoxus S110 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 1.200356667 1.189557779 1.16352423 1.167489533 1.186828711 1.219620692 1.177024728 1.158767846 1.152060412 1.172407903 1.197217381 1.185424872 1.178761185 1.174304014 1.173582067 1.194876394 1.212379684 1.184196352 117610002 arsc Magnetococcus sp. MC-1 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Magnetococcales;family:Magnetococcaceae;genus:Magnetococcus;species:Magnetococcus marinus; 0.803513621 0.806388096 0.83351106 0.793355826 0.802606233 0.810222091 0.779376276 0.801111612 0.855552348 228480939 catechol_b uncultured bacterium Organic Remediation Aromatics Other aromatics superkingdom:Bacteria; 0.78708407 0.808909443 0.830164991 0.800077995 0.803001125 404420235 alkb Mycobacterium fortuitum subsp. fortuitum DSM 46621 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium fortuitum; 0.95121386 0.84439203 0.825254539 0.946754777 0.934892486 0.886328622 0.928299239 0.910929919 1.000275949 0.881855603 0.902604682 0.939551675 0.825738017 0.829845082 0.824379361 0.866869318 0.888467949 0.896858822 353685497 catechol_b uncultured bacterium Organic Remediation Aromatics Other aromatics superkingdom:Bacteria; 0.876205885 0.79016014 0.837153946 0.841062722 0.884693512 389774672 arsc Rhodanobacter spathiphylli B39 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Rhodanobacter;species:Rhodanobacter spathiphylli; 1.481065043 1.443775104 1.420692588 1.42932358 1.408208918 1.466686392 1.386772709 1.431785863 1.408502849 1.389598927 1.411492652 1.400219249 1.393461059 1.388037915 1.373646963 1.397838537 1.466710672 1.422305826 228018837 MCM_3HP4HB Sulfolobus islandicus M.16.27 Carbon Cycling Carbon fixation 3-hydroxypropionate/4-hydroxybutyrate cycle superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Sulfolobales;family:Sulfolobaceae;genus:Sulfolobus;species:Sulfolobus islandicus; 1.093809903 1.122188194 1.097801887 1.121369644 1.13718075 1.107241627 1.110826143 1.077121742 1.104108359 1.144376766 1.14492598 1.193410024 1.105744856 1.069571133 1.11115626 1.120244052 1.110237612 1.078665956 312210542 ligninase Leptosphaeria maculans JN3 Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Leptosphaeriaceae;genus:Leptosphaeria;species:Leptosphaeria maculans; 1.429624127 1.394236506 1.373326558 1.390455806 1.360563194 1.414988237 1.363846411 1.388815332 1.370334757 1.365780352 1.369325104 1.373451689 1.377462576 1.352674868 1.378599917 1.372301891 1.415050933 1.38844709 159181677 dehh109 alpha proteobacterium BAL199 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 1.012098932 1.050468441 1.006944403 1.023757843 0.938853375 0.992072264 0.970157096 1.003408586 0.994252599 1.011534576 1.031076995 1.017638555 0.932048393 0.960919853 0.932755189 0.970031596 1.008866541 1.027726363 384918223 amyA Citreicella sp. 357 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Citreicella; 1.378250339 1.382315859 1.347111607 1.347049376 1.319211882 1.374628059 1.326468009 1.339554225 1.333031163 1.350996342 1.346977615 1.340551251 1.299779342 1.310706935 1.309560871 1.327357895 1.34743739 1.34961443 346643244 gdh Pseudomonas fluorescens Pf-5 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas protegens; 1.062723892 1.032008284 0.982913561 1.106175475 1.003666715 0.996045547 0.974267327 1.031650105 1.073035678 0.999486091 1.010304412 1.05974337 0.993680516 0.934585412 0.945439644 0.991537615 1.022591716 0.981541913 117648160 tehb Acidothermus cellulolyticus 11B Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Acidothermaceae;genus:Acidothermus;species:Acidothermus cellulolyticus; 1.04651496 1.006530443 0.992514863 1.000698217 1.01043327 1.035401764 0.984470373 0.931355272 1.001743197 1.028826332 1.028988713 0.993452425 0.956002051 0.935119169 0.962738363 0.963929591 0.992606945 1.02650375 164455604 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 1.060797506 0.982498895 1.032319087 1.042766743 0.941264094 0.891962503 0.909496938 0.942299164 0.973122756 1.000529358 0.980034341 0.959339782 0.926949586 0.920389964 0.941524226 0.911087127 0.987641502 1.004794144 159485740 mg_chelatase Chlamydomonas reinhardtii Secondary metabolism Pigments Chlorophyll superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Chlorophyceae;order:Chlamydomonadales;family:Chlamydomonadaceae;genus:Chlamydomonas; 0.933101527 0.945809712 0.900890358 0.928046242 0.933547094 0.936828247 0.903699098 0.91432288 0.886912544 0.885335742 0.891681312 0.886256765 0.876071729 0.891470969 0.845917501 0.879382932 0.947474218 0.947729573 149915183 ppx Roseobacter sp. AzwK-3b Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 0.914745675 0.847438949 0.837272088 0.894104782 0.856258694 0.815691308 0.834889473 0.815622037 0.856711064 0.860220644 0.821406012 0.898834739 0.854820669 0.857399327 0.883997253 0.861481888 290956028 mhpa Streptomyces scabiei 87.22 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces scabiei; 0.98502882 1.012527156 0.945424039 0.959081364 0.970153129 1.024548287 0.939136151 0.904738571 0.960034014 0.947261966 0.955590176 0.944927488 0.889048673 0.994289468 0.958473845 0.905194562 1.00013855 1.052160952 110225195 beta_agarase Alteromonas sp. E-1 Carbon Cycling Carbon degradation Agar superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alteromonas; 1.051202086 1.017094698 0.982022256 1.066666145 1.034696422 1.027672055 1.012663497 0.994260165 1.106421941 1.041757875 1.019213011 1.061231557 1.011029096 1.019741824 1.011254098 1.025156423 1.058484411 1.001948994 190685905 mannanase Cellvibrio japonicus Ueda107 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio;species:Cellvibrio japonicus; 1.394466019 1.37253657 1.353913448 1.368425016 1.344546974 1.4118572 1.342130212 1.345847072 1.336137088 1.328654731 1.346561589 1.336878183 1.330065653 1.356195739 1.33134583 1.355500707 1.378600255 1.338818109 63003135 one_ring_12diox uncultured soil bacterium Organic Remediation Aromatics Other aromatics superkingdom:Bacteria; 0.948264666 0.962959981 0.944615477 0.907759277 0.90224439 0.929980268 0.911877263 0.915253158 0.931197229 0.969463957 0.942708387 0.900070471 0.891751931 0.923568432 0.939456911 0.877555463 0.954313511 0.986448551 345888231 ccmL Bilophila sp. 4_1_30 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Bilophila; 0.76329662 0.798229548 237685241 trze Teredinibacter turnerae T7901 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;genus:Teredinibacter;species:Teredinibacter turnerae; 0.745226547 0.8127404 329849042 mannanase Asticcacaulis biprosthecum C19 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis biprosthecium; 0.931590584 0.988815283 0.963992178 0.942649865 0.968066271 0.983467321 0.923458474 0.907755093 0.938940675 1.010571887 0.936969858 0.935883866 0.898675082 0.928865509 0.880298857 0.941080105 0.919047315 0.935304844 256558588 acetylglucosaminidase Brachybacterium faecium DSM 4810 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dermabacteraceae;genus:Brachybacterium;species:Brachybacterium faecium; 1.09915165 1.103568398 1.088613102 1.087376268 1.088086227 1.117647375 1.052572763 1.03386318 1.083278011 1.086434703 1.106134071 1.057675191 1.045889579 1.038433864 1.050945327 1.042756904 1.116817869 1.091710195 395773649 pcag Streptomyces acidiscabies 84-104 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces acidiscabies; 1.100560046 1.162357665 1.100895981 1.114735172 1.119221216 1.153752281 1.123283388 1.060851001 1.074272689 1.154980781 1.140164547 1.13142297 1.114159654 1.126248392 1.097223628 1.132271325 1.105575938 1.154506098 388003864 one_ring_12diox Pseudomonas fluorescens Q8r1-96 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 0.864242577 0.892427611 0.899965511 0.862074474 0.8543595 0.905406094 0.852807831 0.890527055 0.90450758 0.832463799 0.787153451 0.844027453 0.805591153 0.810246153 0.804303713 0.878620157 111147968 ppx Frankia alni ACN14a Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia;species:Frankia alni; 1.172761014 1.172336724 1.156982715 1.172912375 1.182134097 1.180018476 1.170975895 1.153515767 1.180494777 1.179038454 1.173585466 1.182934074 1.114821551 1.122465973 1.061585609 1.151848324 1.169446556 1.162479301 240247502 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.914727054 0.922244367 0.877414384 0.903948523 0.855466144 0.907957933 0.892435981 0.865638122 0.870251496 0.870870388 0.873902071 0.94357979 0.83625369 0.854330041 0.80266567 0.829371634 0.902869367 0.920011368 196478574 ppx Phenylobacterium zucineum HLK1 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Phenylobacterium;species:Phenylobacterium zucineum; 1.006819451 1.034070393 0.990927851 0.96788058 0.973543647 0.965085429 0.945955638 0.963398913 0.986087358 0.992316575 0.996779405 0.949068792 0.88439578 0.960586916 0.876041988 0.921332274 0.985892342 1.011724962 390413036 amyA Terriglobus roseus DSM 18391 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Terriglobus;species:Terriglobus roseus; 0.922588783 0.912276687 0.881535474 0.951442414 0.81208005 0.919218233 0.949172406 0.928690856 0.928377003 0.88847047 0.86602642 0.918181493 0.792871296 0.866639095 0.891421118 0.926548366 325108179 dehh109 Planctomyces brasiliensis DSM 5305 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Planctomyces;species:Planctomyces brasiliensis; 0.807176267 0.855326103 0.841774124 0.817988735 238544296 pmoa uncultured methanotrophic bacterium Carbon Cycling Methane Methane oxidation superkingdom:Bacteria; 0.823155949 0.824452956 0.801345544 0.844560531 0.797668997 0.796468568 0.789133815 0.826459759 0.832011419 14195701 gdh Pseudomonas putida Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.862842259 0.869684006 0.854482043 0.842906859 0.85433161 0.838478608 0.873166426 0.83743068 0.85636064 0.854133832 0.814788291 0.870028641 0.867112727 0.831688981 0.850997596 0.844178131 0.910637051 271964227 urec Streptosporangium roseum DSM 43021 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 0.93580046 0.996335471 0.903200346 0.969488408 0.938248769 0.890135758 0.968100895 0.931555565 0.970188043 0.929097437 0.925074163 0.927432814 0.942213282 0.887772985 0.814619437 0.842574355 0.940287043 0.988916611 345283420 pula Bifidobacterium animalis subsp. lactis BLC1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium animalis; 1.035817026 1.020239872 0.997398563 1.040940352 0.997392068 1.02167673 0.990281628 1.024918252 1.020470483 1.00895605 0.993393801 1.02264596 0.981012046 0.977278781 0.944775804 0.978938653 1.04692188 1.008144492 76056969 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.845344627 0.885887686 0.837243201 0.868638745 0.85246073 0.864685187 0.836276609 0.81294761 0.859543426 0.851656958 0.899675765 0.925276591 358238281 poba Gordonia amarae NBRC 15530 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia amarae; 1.188913262 1.169067603 1.13575779 1.178822585 1.084707496 1.158642006 1.120748388 1.133110206 1.15953586 1.151403125 1.119190084 1.131573561 1.107278206 1.101909003 1.114320503 1.119545249 1.182756951 1.161252857 76577396 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.238735052 1.219463362 1.229055704 1.226185456 1.235462204 1.248167803 1.23091083 1.20838285 1.219160238 1.198473955 1.174345689 1.208898603 1.200289887 1.159285646 1.162578366 1.176226141 1.212555417 1.222521946 300310262 oxdb Herbaspirillum seropedicae SmR1 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herbaspirillum;species:Herbaspirillum seropedicae; 0.858311214 0.903647702 0.892232529 0.980193825 0.874344799 0.821615277 0.865328861 0.834801273 0.848311343 0.826280544 0.881451429 0.848487704 0.838930719 0.918571877 76577538 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.80400715 0.815066167 0.878620781 0.853867165 0.852805592 0.836393771 0.789923769 0.799251388 0.833959989 0.834925652 0.844498357 0.805478176 0.893323731 260430839 nosz Silicibacter lacuscaerulensis ITI-1157 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria lacuscaerulensis; 0.891000835 0.881005389 0.874815092 0.931960101 0.928770631 0.898159301 0.975812777 0.923987639 0.886478568 0.868171991 0.875360563 0.904299531 0.906372529 0.850944941 0.870971167 0.844126758 0.887577084 0.851221072 118164429 cutinase Mycobacterium avium 104 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 1.009329387 1.015469061 1.046612023 1.016337909 1.027459586 1.076968173 1.027264264 0.996008963 0.9693319 1.051813936 1.018176747 1.032534287 1.005904004 1.029256015 0.98899085 1.002433772 1.043600714 1.047495177 357972041 urec Halomonas boliviensis LC1 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas;species:Halomonas boliviensis; 0.903059587 0.922448445 0.915689992 0.915970465 0.925461712 1.04883187 0.943175676 0.866983326 0.91715831 0.936479618 0.879862222 0.904982627 0.950741227 0.88045969 0.88377441 0.891342097 0.904561724 0.936102577 356879062 ppk Azospirillum brasilense Sp245 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum brasilense; 0.851338988 0.984943174 0.903100874 0.835076795 0.852287212 0.849638054 0.838251319 0.883600881 0.806082149 0.827111075 0.83828123 0.827243734 0.888801879 0.940272918 270298222 fthfs uncultured rumen bacterium Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria; 0.840701151 0.803203787 0.788218213 0.89813359 0.830899965 0.851513737 0.887187487 0.874390958 0.859830613 0.876881028 0.871163416 0.880547304 0.869211451 0.847493852 0.851953979 0.848906088 0.877702963 0.872399789 38373201 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.015937984 1.021215796 0.944682975 0.990275784 0.927762331 0.975982354 0.966805876 1.018911094 1.02325494 1.008080615 0.921079401 0.975648376 0.876403518 0.921052884 0.815974313 0.946660837 0.976252702 1.012233089 171911021 Sir Verrucomicrobium spinosum DSM 4136 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobiaceae;genus:Verrucomicrobium;species:Verrucomicrobium spinosum; 0.827408322 0.890299561 0.805293107 0.867552219 0.921266774 0.873598996 0.850898716 0.836474671 0.842839491 0.807683943 0.852695591 0.870444328 0.849715426 117923739 b_lactamase Magnetococcus marinus MC-1 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Magnetococcales;family:Magnetococcaceae;genus:Magnetococcus;species:Magnetococcus marinus; 1.07110275 1.046393219 1.102368834 1.087928997 1.017219377 1.04881877 1.035757489 1.049524529 1.051820312 1.054110482 1.033409645 1.008114422 0.991491537 1.035067518 0.915587805 0.983820504 1.062910276 1.035280596 3157622 nifh unidentified nitrogen-fixing bacteria Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.841490637 0.79516002 0.781439618 0.840271144 0.848774643 0.83565069 0.82420757 0.802169822 0.812495677 0.83363797 327548809 arylest Oxalobacteraceae bacterium IMCC9480 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae; 0.775589699 0.832899716 0.842611314 0.794912117 0.826777409 0.788178784 0.774807375 0.831358365 109452555 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.99410891 1.013135187 1.020834664 0.985468253 0.900527939 0.973141121 0.945299039 0.98174421 0.998541493 0.974858553 0.922036095 0.959695231 0.875728706 0.930408355 0.875399707 0.901527748 0.95898804 1.023457112 150376817 FBP_aldolase Sinorhizobium medicae WSM419 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 0.999218992 1.003392677 1.002310389 0.963643551 0.992489708 0.966070973 0.99460006 0.928704392 1.003502074 0.987422146 1.025663699 0.953289489 0.935670561 0.882277 0.936977559 0.936870009 1.021155052 1.006794037 111020052 chnb Rhodococcus sp. RHA1 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 0.965387915 0.941226033 0.962688005 0.951789177 0.929916202 0.933995998 0.953640099 0.935721253 0.949895907 0.918670387 0.957110708 0.935855119 0.920865507 0.914460841 0.870713637 0.900178272 0.959536021 0.967751378 323149226 mg_chelatase Coccomyxa sp. C-169 Secondary metabolism Pigments Chlorophyll superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Trebouxiophyceae;family:Coccomyxaceae;genus:Coccomyxa;species:Coccomyxa subellipsoidea; 1.037799194 0.964028385 0.954827926 0.951544125 0.946636382 0.983760525 0.935396173 0.917277768 0.986749813 1.037333345 0.987484831 0.978220097 0.952854546 0.965563809 0.944133028 0.970051523 0.992274438 1.009569557 7861554 tktA Hydrogenophilus thermoluteolus Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Hydrogenophilus; 0.845725634 0.858503453 0.833122461 0.867527529 0.822640455 0.820222486 0.877808475 0.800524522 0.830734887 0.830478008 0.853103478 0.816462556 0.829353033 353211049 mer Hyphomicrobium denitrificans 1NES1 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium;species:Hyphomicrobium denitrificans; 1.360333164 1.410085562 1.325970777 1.366464792 1.345058382 1.34027755 1.340065576 1.36877306 1.345547381 1.320452027 1.315018815 1.356964659 1.32519408 1.291247006 1.293336927 1.337162932 1.324784178 1.327053688 29466000 norb uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.845319752 0.83079832 0.813955843 0.849400697 0.936880919 0.817537896 0.863830331 0.9199673 0.825616921 0.773742235 0.822158218 2052182 mer Pseudomonas sp. Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria; 1.165665435 1.236801163 1.15540405 1.181108077 1.160464985 1.228838624 1.152159346 1.142225092 1.179179551 1.185832795 1.156751512 1.17404761 1.140700172 1.125782834 1.11529858 1.185275564 1.201076609 1.169202215 15889672 urec Agrobacterium tumefaciens str. C58 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 1.150601266 1.102975318 1.102227923 1.118341087 1.083564286 1.097227902 1.082500931 1.074387581 1.110890328 1.089058518 1.069068863 1.106803258 1.060649169 1.042552052 1.065991996 1.063610143 1.14708107 1.068238393 346993697 phn Ruegeria sp. TW15 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 1.130745549 1.107603539 1.170750815 1.206181523 1.144163266 1.129897419 1.053906805 1.188981227 1.129622824 1.137688168 1.112539975 1.173948936 1.082421982 1.07725237 1.11015182 1.109871223 1.075776104 1.08559895 297627145 arsc Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium;species:Propionibacterium freudenreichii; 1.326542776 1.348061088 1.311179611 1.312831239 1.298391019 1.31366038 1.27451013 1.298275549 1.281188523 1.291456572 1.306331806 1.30837035 1.288179344 1.267460426 1.278278787 1.267416215 1.323248497 1.3206918 84381458 acetylglucosaminidase Janibacter sp. HTCC2649 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Janibacter; 0.88825536 0.838872998 0.873786935 0.837636539 0.900964911 0.863638402 0.905146835 0.873600537 0.9144472 0.843079722 0.894834312 0.863330975 0.824260766 0.841502095 0.819293693 0.817206477 0.894912713 0.909224275 320155192 Sir Vibrio vulnificus MO6-24/O Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio vulnificus; 0.801126639 0.814391001 0.81329104 0.803739745 0.835321381 0.856079831 0.835169283 0.829066986 0.825151895 0.835522961 0.780992586 0.851035847 0.8394184 189353245 chnb Burkholderia multivorans ATCC 17616 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 0.92390666 0.953675307 0.907228627 0.897917754 0.947175869 0.956503274 0.917613238 0.838723928 0.945111611 0.892387418 0.896353832 0.857568648 0.905580425 0.899094363 0.847084027 0.887582044 0.941082783 0.967183037 293606281 cysJ Achromobacter piechaudii ATCC 43553 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter;species:Achromobacter piechaudii; 0.90408814 0.870883036 0.902440444 0.919251708 0.872107771 0.859073519 0.837380616 0.881431801 0.896254713 0.890455154 0.886045048 0.901193149 0.854116888 0.828722883 0.833770664 0.885708311 0.908213478 0.828665127 89360249 catechol Xanthobacter autotrophicus Py2 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 1.329186008 1.318055452 1.267527083 1.270714327 1.267070863 1.328282807 1.275120186 1.275533936 1.25858867 1.263560839 1.292528727 1.281906507 1.269689736 1.268913381 1.262153635 1.282478028 1.300215284 1.273351399 90020589 pectinase (pectate_lyase) Saccharophagus degradans 2-40 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Saccharophagus;species:Saccharophagus degradans; 0.794854769 0.829533183 0.80660197 0.79624363 0.833617072 0.830212297 0.82542546 0.858432807 0.846053037 0.839393633 74038278 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.762153994 0.805325314 385803909 amyA Haloquadratum walsbyi C23 Carbon Cycling Carbon degradation Starch superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloquadratum;species:Haloquadratum walsbyi; 1.060086 1.11957851 1.068943294 1.081868427 1.081525239 1.052762921 1.033307564 1.038434199 1.128325781 1.077247495 1.043890794 1.087836354 1.023508237 1.026365552 1.027845998 1.044669315 1.039119125 1.067615554 225047243 atza Clostridium asparagiforme DSM 15981 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium asparagiforme; 1.049073436 1.027420041 1.016326458 1.02736538 1.015345848 1.046755129 1.021944679 0.999597493 1.040913117 1.059056919 1.065009402 1.041347808 1.013561777 0.992279194 1.014606299 0.984922284 1.02306271 1.007007915 325530424 tktA Nitrosomonas sp. AL212 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas; 1.345824882 1.310797868 1.321930161 1.283077583 1.346623638 1.311811409 1.310817891 1.299254415 1.330027008 1.357580113 1.348587141 1.319603796 1.290824895 1.320656165 1.320586916 1.284767802 1.310479122 1.332334484 299766972 ara uncultured fungus Carbon Cycling Carbon degradation Hemicellulose superkingdom:Eukaryota;kingdom:Fungi; 1.102492707 1.058358577 1.059651105 1.040610589 1.044183798 1.077194468 1.026139612 1.078966466 1.043793022 1.038581615 1.01393559 1.018909551 1.057075853 1.048594609 0.988592066 1.019753226 1.040705478 1.079565899 311886918 bphc Rhodococcus equi 103S Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus equi; 0.939445334 0.915048763 0.891185478 0.923007445 0.938281855 0.931779705 0.931539211 0.935371859 0.943013253 0.886663981 0.900202421 0.914005553 0.86010774 0.868186904 0.831504995 0.891947659 0.901738965 220927400 soxY Methylobacterium nodulans ORS 2060 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 1.302564253 1.298500582 1.299304523 1.318359691 1.290664129 1.303491718 1.290810782 1.34127026 1.295896308 1.283305156 1.286819685 1.326886506 1.27038144 1.265450662 1.291041305 1.296936881 1.285537137 1.277682472 296446294 FBPase Methylosinus trichosporium OB3b Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylocystaceae;genus:Methylosinus;species:Methylosinus trichosporium; 0.798368099 0.867618006 0.8419461 0.849231741 0.851356882 0.821031633 0.807678892 0.845529151 0.818883218 0.861058931 0.80942627 0.8034693 0.831214891 0.844670314 323527974 tktA Burkholderia sp. CCGE1001 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 0.964172108 0.920671497 0.945730787 0.952024883 0.955504891 0.922661378 0.93465738 0.968721048 0.959931526 0.911621761 0.90500206 0.925455861 0.879522442 0.825294884 0.868349024 0.883764843 0.928103597 0.943943911 94471071 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.035317096 1.032403686 0.989653905 1.051094664 0.986034677 1.068286984 0.974291615 1.021923839 1.014406684 1.022093937 1.009937542 1.011405042 0.953365503 1.044068365 0.933389136 1.002529808 1.03532598 1.04663589 309303964 phospholipase_B_fungi Puccinia graminis f. sp. tritici CRL 75-36-700-3 virulence degradation NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;order:Pucciniales;family:Pucciniaceae;genus:Puccinia;species:Puccinia graminis; 0.844751528 0.837743093 0.86885813 0.872908911 0.899831901 0.858562186 0.957977381 0.904813088 0.893928588 0.920586056 0.924207328 0.93167505 0.86779982 0.82860513 0.858496132 0.866171201 0.939885718 0.923483684 258602414 arsc Corynebacterium jeikeium ATCC 43734 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium jeikeium; 0.859801796 0.817763169 0.793147479 0.846874094 0.790432765 0.801744646 0.831154498 296021683 xylanase Cellulomonas flavigena DSM 20109 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas;species:Cellulomonas flavigena; 0.964265729 0.972517859 0.954384063 0.946998997 0.90354018 0.940449664 0.886400482 0.91155002 0.919582271 0.968641091 0.856483559 0.910452664 0.862676042 0.868032879 0.849371865 0.868899015 0.978328873 0.981220621 225042544 cellobiase Clostridium asparagiforme DSM 15981 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium asparagiforme; 0.830044615 0.863408581 0.849076638 0.87377477 0.846432121 0.821809895 0.805629091 0.852186342 0.859479027 0.825096611 0.868457665 0.867951458 0.879030471 56709183 ben_bcla Ruegeria pomeroyi DSS-3 virulence NA NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 0.837351157 0.83830486 0.891927935 0.889691177 0.90252397 0.891469238 0.893929797 0.87113944 0.851903975 0.908968821 0.893921665 0.900651584 0.816285749 0.832121452 0.831356092 0.84559891 0.888953918 0.846203 339006418 b_lactamase Brevibacillus laterosporus LMG 15441 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Brevibacillus;species:Brevibacillus laterosporus; 0.857703487 0.799476877 0.821302424 0.784200488 0.826684665 0.851728438 0.802957488 0.846818509 0.822682355 0.819969317 270505664 cda Streptosporangium roseum DSM 43021 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 0.989709103 0.993455978 0.898117545 1.003696011 0.974758231 1.013224274 0.981277559 0.910884792 0.969710566 0.989929945 0.971620746 1.01788557 0.973828821 0.970938864 0.984377643 0.98502017 0.977894006 0.967347051 375108813 catb Alishewanella jeotgali KCTC 22429 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alishewanella;species:Alishewanella jeotgali; 0.872168293 0.890450649 0.897266755 0.9530657 0.844449833 0.918433567 0.896433003 0.935626192 0.908166439 0.921073695 0.937494422 0.881056577 0.968193567 0.858702048 0.898099134 0.950903885 171683305 phospholipase_D_fungi Podospora anserina S mat+ Carbon Cycling Carbon degradation Phospholipids superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Lasiosphaeriaceae;genus:Podospora;species:Podospora anserina; 1.04121826 1.014049112 0.992293415 1.004953266 1.025565712 1.01133037 0.987286058 0.985345091 1.029197698 0.946743604 0.969203145 0.974574899 0.92752672 0.944217441 0.876779412 0.93052296 0.993473079 0.985552435 350569836 amyA Propionibacterium avidum ATCC 25577 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium;species:Propionibacterium avidum; 0.830640666 0.783589606 0.81361242 0.796288532 0.8048717 0.781098019 33574493 urec Bordetella parapertussis Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella; 0.858613637 0.912711975 0.933890572 0.883963297 0.825983885 0.826942128 0.858914521 0.854513257 0.879583587 0.856760806 0.866250722 0.849854151 0.821862821 0.905164161 0.862551656 0.912342127 0.881068859 159044699 FBP_aldolase Dinoroseobacter shibae DFL 12 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 0.958612336 0.985754276 0.9367592 1.000206708 0.960814975 0.93022758 0.961993021 0.896764403 0.946424188 0.873037381 0.81363625 0.911905814 0.896044258 0.881493186 0.827068612 0.861446459 0.96545668 0.977410614 344341536 GAPDH_Calvin Thiocapsa marina 5811 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiocapsa;species:Thiocapsa marina; 0.77309098 0.88433168 0.823424225 0.80825111 0.784667473 0.842655109 0.822085787 0.802471998 304322313 glucoamylase Parvularcula bermudensis HTCC2503 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Parvularculales;family:Parvularculaceae;genus:Parvularcula;species:Parvularcula bermudensis; 1.278821784 1.222595376 1.240142958 1.282660352 1.236030157 1.273838551 1.246352209 1.280354256 1.234547174 1.205693654 1.239844618 1.249581268 1.231673203 1.169197497 1.217387868 1.222391497 1.280866087 1.207410636 329120545 linc Neisseria bacilliformis ATCC BAA-1200 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria bacilliformis; 1.385199734 1.357284289 1.356523972 1.354730179 1.356111476 1.389428308 1.324074721 1.31861448 1.351153298 1.353627182 1.354781519 1.367257307 1.347769938 1.31960889 1.334465545 1.351951703 1.380934805 1.352219781 383756125 amyA Rubrivivax gelatinosus IL144 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Rubrivivax;species:Rubrivivax gelatinosus; 0.80162782 0.834425377 0.830912183 0.803690488 0.814004075 0.798355122 0.795669922 0.833165332 0.840189864 146340019 amyA Bradyrhizobium sp. ORS 278 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 1.075017602 1.063502259 1.069764334 1.035852563 1.060197212 1.034079137 1.087648798 1.070840071 1.063832279 1.06297676 1.06575662 1.045906276 1.028466804 0.996697765 1.017194347 0.98946171 1.079365304 1.070285058 111017380 oxdb Rhodococcus sp. RHA1 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 1.116397311 1.133815728 1.120361047 1.094391196 1.122371495 1.124526477 1.103846207 1.105270843 1.139441328 1.110183178 1.097365816 1.098506986 1.081393196 1.03737448 1.029377845 1.077926924 1.150701753 1.12680201 81176227 protease_serine_fungi Penicillium nordicum Carbon Cycling Carbon degradation protein superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium; 0.814083902 0.786723732 0.823775905 0.785295621 56695899 SoxC Ruegeria pomeroyi DSS-3 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 1.594336307 1.547118988 1.542070799 1.568840448 1.542317615 1.601299142 1.546294648 1.572477424 1.53582423 1.515659933 1.532840285 1.552686225 1.520803663 1.515050053 1.531047017 1.555928239 1.573310045 1.51924266 154246839 merb Xanthobacter autotrophicus Py2 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 1.320515016 1.310922186 1.255271229 1.27425141 1.252950074 1.29324388 1.264184713 1.249349 1.253248471 1.260590242 1.26837948 1.262542929 1.239203488 1.260689189 1.253662512 1.256764026 1.281535227 1.254666564 383780082 chitinase Actinoplanes missouriensis 431 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes;species:Actinoplanes missouriensis; 1.111368929 1.141878082 1.094583092 1.152141218 1.118980804 1.161477781 1.173523315 1.151667736 1.115531356 1.122530486 1.144801427 1.150920813 1.138939399 1.102469625 1.128281636 1.143239731 1.093181941 1.097703201 374312539 RgaE Granulicella mallensis MP5ACTX8 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Granulicella;species:Granulicella mallensis; 1.194358064 1.194479868 1.213253002 1.222384001 1.210380616 1.21303816 1.208683696 1.222360159 1.191863511 1.202898978 1.197496447 1.190750055 1.164478484 1.140024696 1.127727185 1.156564856 1.206220939 1.162554973 146195508 amie Bradyrhizobium sp. ORS278 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.899505169 0.910365531 0.929664131 0.931215444 0.974509589 0.923742733 0.902583317 0.879887039 0.921331002 0.940898168 0.925827263 0.960644744 0.890345901 0.885747835 0.846239502 0.898319178 0.898264902 0.9151512 383642942 amyA Streptomyces chartreusis NRRL 12338 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces chartreusis; 0.987296503 0.937605932 0.973556666 0.943244464 0.956212833 0.992734625 0.947533326 0.928721821 0.991519668 0.94828138 0.957264432 0.939386963 0.930051261 0.963900775 1.004707546 0.944535059 0.983488741 0.977314827 394989739 nosz Sulfuricella denitrificans skB26 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Sulfuricella;species:Sulfuricella denitrificans; 0.961834384 0.995382265 0.998702927 1.043964263 1.007999144 0.983800211 1.007958515 1.00492068 1.014204819 0.965603755 0.986745872 0.995394657 0.964285753 0.96183171 0.956500235 0.936887191 0.965196968 0.926286458 312140108 amyA Rhodococcus equi 103S Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus equi; 0.913587009 0.886415585 0.817600636 0.933499184 0.847026116 0.883242977 0.866469614 0.890900878 0.887950996 0.84270931 0.884477789 0.880939109 0.827093272 0.840812074 0.855627485 0.950983291 0.858603895 357394035 chitinase Kitasatospora setae KM-6054 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Kitasatospora;species:Kitasatospora setae; 0.885499864 0.849264699 0.861647952 0.889012199 0.826919655 0.847556385 0.826153501 0.833901879 0.861297397 0.805944921 0.870149719 0.835395608 0.836210292 340029304 mauab Paracoccus sp. TRP Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus; 0.94125706 0.966677972 0.958538665 0.975770832 0.989453985 1.011668518 0.987977085 0.996191337 0.943806742 0.969923424 0.936868916 0.980231258 0.919566867 0.909631872 0.906063845 0.899533981 0.962660885 0.957209938 380774728 amyA Microbacterium laevaniformans OR221 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Microbacterium;species:Microbacterium laevaniformans; 1.046488737 1.060661823 1.073156194 1.086059762 1.046096062 1.037698812 1.023622131 1.044995172 1.113123244 1.024262028 1.053018963 1.040534156 1.065268833 1.002239129 1.039740986 0.989709844 1.071025014 1.02865686 359255229 GAPDH_Calvin Mesorhizobium alhagi CCNWXJ12-2 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium alhagi; 0.830418228 0.840296802 0.801207128 0.83454989 0.840924261 0.790943873 0.806916484 0.788398842 0.853453469 0.806324573 373102616 fccab Cupriavidus basilensis OR16 Sulfur Sulfide Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus basilensis; 1.014218292 0.98114 0.990181897 0.976789692 0.982803657 0.982806214 0.984036442 0.978430329 0.996596651 0.973411719 0.982044525 0.946862586 0.964899004 0.926769188 0.935047433 0.962479431 0.989800617 1.002836055 373849320 nrfa Opitutaceae bacterium TAV5 Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 0.881812655 0.886511699 0.887769327 0.882551885 0.831573433 0.842677478 0.823727446 0.854770922 0.839870273 0.856650242 0.906471117 0.852896762 0.791789928 0.846441071 0.806385734 0.847805682 0.881174702 0.90055833 146193593 nhh Bradyrhizobium sp. ORS278 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.9488001 0.949295271 0.98656884 0.967640333 0.998030531 0.949284079 0.973178559 0.980259261 0.983318354 0.928171751 0.932311247 1.058326352 0.921138387 0.917672849 0.876717191 0.888898006 0.924524913 0.912271599 211905435 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.873443318 0.86515703 0.851372739 0.856595248 0.864277464 0.826325511 0.841614595 0.820138774 0.826705364 0.866275868 0.816677723 0.865755432 0.806060974 0.828029501 0.874268048 323472777 rubisco uncultured bacterium Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria; 0.92657409 0.864712096 0.864305542 0.924679376 1.00452579 1.083198908 0.925925155 0.850021732 0.941629209 0.863131575 0.823227949 0.994529259 0.854821797 0.834513244 0.856781485 0.903471868 0.864888121 319413989 phenol_oxidase uncultured bacterium Carbon Cycling Carbon degradation Lignin superkingdom:Bacteria; 1.374873237 1.360018395 1.336604313 1.33199389 1.306084906 1.360996186 1.297286144 1.306657566 1.308037881 1.320420885 1.319566021 1.324757992 1.297690273 1.30989883 1.298960853 1.329752817 1.344473616 1.330242568 349687963 endoglucanase Gluconacetobacter oboediens 174Bp2 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter oboediens; 1.259628647 1.275468128 1.265998669 1.263092837 1.291581197 1.272293393 1.287716751 1.288751648 1.25684456 1.266198644 1.260261446 1.313522958 1.268423812 1.265325671 1.267893226 1.306892479 1.254439682 1.266690759 295677028 ben_bcla Burkholderia sp. CCGE1002 virulence NA NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 0.898089088 0.925784565 0.890724136 0.970884386 0.911290007 0.948576293 0.900775783 0.912353595 0.879491702 0.942631861 0.885511971 0.910934415 0.91817809 0.903086811 0.89255391 0.886327102 0.948478224 0.913354491 359423911 terc Gordonia amarae NBRC 15530 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia amarae; 1.051761376 1.072344558 1.027864341 1.031102202 1.056978934 1.076133064 1.055247064 1.026249903 1.007083862 1.034792803 1.041476248 1.028936007 1.037828845 1.046674756 1.008385289 1.030733045 1.0469578 1.047463311 98977961 arsc Sphingopyxis alaskensis RB2256 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingopyxis;species:Sphingopyxis alaskensis; 1.292803951 1.27027646 1.264397089 1.277310683 1.246883784 1.286174515 1.232793047 1.275777275 1.260417635 1.244320007 1.24029176 1.259527022 1.228886007 1.225065229 1.20178142 1.237736041 1.269289579 1.264711347 32307669 rubisco uncultured bacterium Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria; 0.788832469 0.809273435 0.797709105 0.792775266 0.824166416 160864687 pula "Salmonella enterica subsp. arizonae serovar 62:z4,z23:--" Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 0.960409488 0.934673466 0.940728782 0.944327807 0.939771281 0.978145416 0.903278583 0.914484751 0.960480569 0.937221772 0.897230456 0.96896483 0.890921745 0.956205773 0.932381224 0.948501465 0.971390454 0.975060535 408779959 bphc Mycobacterium kansasii ATCC 12478 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium kansasii; 1.041252454 1.004172872 1.011144764 1.036710732 1.008057647 1.029472102 0.969550536 1.017528926 1.018397996 1.026514618 0.995095067 1.043041031 0.965874881 0.987292506 0.950391377 0.995700832 1.023929824 1.021269933 297196030 ara Streptomyces pristinaespiralis ATCC 25486 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces pristinaespiralis; 1.362456471 1.362472666 1.33784339 1.341217638 1.324755163 1.374353145 1.316810132 1.322432007 1.303332281 1.33079512 1.314113343 1.324874179 1.280119976 1.29473567 1.284811551 1.29676116 1.346855865 1.327227476 126106201 tktA Rhodobacter sphaeroides ATCC 17029 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 1.187061787 1.11964909 1.151644642 1.179599303 1.183996629 1.234424044 1.199010368 1.172249959 1.17269802 1.190206017 1.170200292 1.176678444 1.182161618 1.16698681 1.161255912 1.153376727 1.200537383 1.147387958 118165597 cdh Mycobacterium avium 104 Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 0.937261157 0.995523081 0.970952003 0.902790517 0.911914595 0.955264443 0.913178648 0.924070626 0.914705631 0.926499632 0.920883271 0.915326866 0.891072461 0.854978063 0.833725258 0.95333399 300715557 phytase Erwinia billingiae Eb661 Phosphorus Phytic acid hydrolysis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia billingiae; 0.938577332 0.995583719 0.975567013 0.984270482 0.981670137 0.965522356 0.976734186 0.989500677 0.974910519 0.97643669 0.949038663 0.99700342 0.982896209 0.916397671 0.926800649 0.948303463 0.96172449 0.99576332 160917807 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.24234979 1.201371933 1.219102258 1.229037771 1.231818716 1.247490064 1.226219192 1.238786651 1.209904073 1.194811928 1.227707182 1.220986129 1.217219682 1.158518164 1.167124607 1.195337013 1.241104969 1.184158237 371552167 amyA Streptomyces coelicoflavus ZG0656 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicoflavus; 0.881568084 0.945637776 0.869598022 0.937380686 0.866620171 0.92821772 0.835489419 0.864514575 0.874581154 0.95910523 0.839859303 0.921623459 0.948571801 0.911279132 0.914224487 0.878301923 0.925600778 119391545 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.209737106 1.221234956 1.19403069 1.170155967 1.183103569 1.208157057 1.145907882 1.15575441 1.154519145 1.183285804 1.177585639 1.163996825 1.178304423 1.166111299 1.151078784 1.14957362 1.194523077 1.210947186 6466835 phenol_oxidase Pycnoporus cinnabarinus Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Polyporaceae;genus:Pycnoporus; 0.808582122 0.807140697 0.82955366 0.888008734 0.840177304 0.791451653 0.8421716 0.7962121 0.865770504 0.887853873 119525483 amyA Thermofilum pendens Hrk 5 Carbon Cycling Carbon degradation Starch superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermofilaceae;genus:Thermofilum;species:Thermofilum pendens; 1.098051219 1.111480332 1.133854868 1.162548442 1.13961914 1.070267011 1.089228927 1.145761103 1.092391925 1.110393623 1.087265724 1.166829086 1.104832314 1.026210484 1.072925299 1.041001682 1.095922797 1.058484039 160917506 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.153770963 1.129662744 1.088291846 1.154363927 1.105089024 1.120337558 1.104328997 1.112114845 1.102749287 1.100796437 1.075222646 1.126156547 1.085307024 1.07517163 1.081848024 1.127998846 1.148082605 1.108966415 196189776 pula Synechococcus sp. PCC 7335 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 0.799877678 0.809392551 0.795342981 0.84356007 332377296 fthfs uncultured bacterium Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria; 0.791472363 0.835874204 0.767489294 0.817267804 0.816331411 0.804435244 0.827735095 0.841287919 91807184 nosz uncultured alpha proteobacterium Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 1.074617113 1.099055884 1.031680282 1.046818553 1.029739678 1.094842248 1.022132471 1.020601547 1.052108286 1.055847897 1.058644019 1.03286259 1.013308014 1.025670313 1.037052465 1.03232502 1.064616304 1.091968505 373102858 b_lactamase Cupriavidus basilensis OR16 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus basilensis; 1.082880131 1.068752064 1.065213585 1.054833865 1.050232692 1.066906115 1.071854178 1.053933298 0.994622604 1.027582533 1.015636194 1.066389715 0.98457074 0.994703908 0.89751054 0.982498033 1.037687091 1.091628424 329300494 mer Streptomyces griseoaurantiacus M045 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseoaurantiacus; 0.870125058 0.906692393 0.858414378 0.947693582 0.878377278 0.88133813 0.86613716 0.886150668 0.881219438 0.835952534 0.864166648 0.823225424 0.833687797 0.835106929 0.905226249 0.895500359 214043104 xyla Roseobacter sp. GAI101 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 0.904048631 0.959555096 0.912810291 0.933964181 0.949874329 0.938284599 0.861036665 0.868348786 0.859926175 0.917756208 0.87549632 0.909682057 0.938885161 0.869360984 0.877611559 0.887948277 0.941759469 0.931345471 118171879 ppx Mycobacterium smegmatis str. MC2 155 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 0.99271944 0.94636988 0.968645551 0.967874369 0.924077828 0.936271864 0.902507337 0.935577732 0.979433621 0.965196541 0.97077068 0.954674804 0.933793409 0.944007409 0.932530248 0.928753109 0.986826153 0.977062654 349700943 vana Gluconacetobacter europaeus LMG 18494 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter europaeus; 0.919660149 0.96618929 1.041005633 1.016638051 1.036005755 1.011798485 0.96263751 1.007602049 1.003336201 0.959056701 0.936065004 0.990961077 0.964404105 0.937028447 0.954808367 1.008949819 0.98778854 0.97478562 12659194 nifh Treponema sp. ZAS-2 Nitrogen Nitrogen fixation NA superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetes;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema; 1.06423064 1.033001731 1.006987559 1.038541907 0.972631592 1.016034145 0.986774262 1.002281296 1.02613872 1.003648826 0.985194977 1.035106019 0.979139439 0.971282712 0.962307692 1.000172604 1.042693759 1.015280403 149359410 ppx Marinobacter algicola DG893 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter algicola; 0.800264457 0.792230401 0.833933384 0.849731904 89113908 exopolygalacturonase_fungi Aspergillus niger Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 0.9992658 0.964931935 1.020130885 0.956480065 0.929150963 0.981251444 0.931774971 0.940804019 0.960655013 0.970774147 0.975215654 0.945896773 0.900265307 0.975255775 0.925449168 0.892134991 0.949692366 0.976335359 86568973 limeh Frankia sp. CcI3 Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 0.924120788 0.927189533 0.864052346 0.889022473 0.900039997 0.90839406 0.904268199 0.916571672 0.892036569 0.890177372 0.851849723 0.881267063 0.870485677 0.820700076 0.817011489 0.897970983 0.871267042 36786085 ppk Photorhabdus luminescens subsp. laumondii TTO1 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Photorhabdus;species:Photorhabdus luminescens; 1.148136504 1.08974239 1.09995088 1.078192254 1.101330453 1.122295083 1.076910592 1.069095751 1.073345316 1.100960083 1.10691393 1.084337726 1.051777163 1.035354541 1.009987339 1.020847177 1.095548156 1.094145867 397727669 bphF1 Rhizobium sp. AP16 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 0.834762306 0.79745301 0.928172933 0.803160372 0.775844317 0.830084863 25270165 nhh Rhodococcus sp. Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 0.866682069 0.932865797 0.910636496 0.874601007 0.907978594 0.961159028 0.877393069 0.864125418 0.883357727 0.909916655 0.895791235 0.869145164 0.895778664 0.920060167 0.881865406 0.877899587 0.951471152 0.929862804 133914413 chitinase Saccharopolyspora erythraea NRRL 2338 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 0.895509149 0.923440276 0.89965941 0.911885793 0.890138472 0.924767508 0.885920398 0.899227441 0.911505071 0.9299816 0.90556651 0.851632871 0.846606473 0.83223582 0.800720072 0.829588907 0.903438166 0.942847007 223585910 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.05093528 1.069779196 1.052557985 1.111119962 1.075678734 1.118167318 1.074507984 1.092665767 1.059027978 1.054942065 1.112159573 1.080066164 1.094051641 1.031312359 1.032568459 1.079835957 1.138511454 1.049595607 309813295 merb Dermacoccus sp. Ellin185 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dermacoccaceae;genus:Dermacoccus; 1.133038458 1.114694139 1.116615757 1.129582636 1.12404609 1.145111257 1.125387935 1.121405457 1.123497574 1.107316572 1.117184031 1.132594013 1.123105403 1.077432148 1.098396853 1.101713073 1.145173597 1.115923545 319949839 ppx Dietzia cinnamea P4 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dietziaceae;genus:Dietzia;species:Dietzia cinnamea; 1.170506664 1.162169102 1.164045525 1.170040832 1.097760419 1.17622977 1.10958115 1.147773409 1.152688151 1.15502611 1.12756743 1.124535124 1.117500804 1.128020832 1.079691974 1.137235117 1.181859603 1.166333449 312198133 limeh Frankia sp. EuI1c Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 1.126909886 1.107381845 1.104243453 1.113797253 1.05924745 1.124802911 1.066939002 1.105786802 1.113402476 1.123278113 1.086312499 1.112300062 1.072388559 1.075881476 1.035831808 1.082451252 1.123698365 1.104956747 45386147 narg unidentified bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.920610651 0.922065816 0.83142626 0.937492118 0.867324042 0.88643051 0.828051481 0.889953199 0.899397874 0.843120084 0.885616375 0.848320312 0.877222352 0.860642323 0.929672753 0.904449828 40740069 rgh Aspergillus nidulans FGSC A4 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 0.834041919 0.813714928 0.786986632 0.835011092 0.837548207 0.80414047 163761438 soxY Hoeflea phototrophica DFL-43 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Hoeflea;species:Hoeflea phototrophica; 1.010108907 1.006589403 1.020615189 1.027510965 1.004933816 1.019981237 1.001324832 1.008203124 1.023547753 1.008523803 1.015775346 1.020618928 0.991518654 0.964144755 0.972787179 0.981844465 1.010024129 1.025395364 39968601 cutinase Magnaporthe oryzae 70-15 Carbon Cycling Carbon degradation Cutin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 1.099227382 1.086064975 1.083551974 1.102657985 1.078935474 1.09830739 1.081986366 1.124999741 1.083274822 1.101036787 1.073606882 1.09943408 1.063463319 1.111266347 1.103631211 1.088188842 1.088878689 1.112613144 84711534 nifh Polaromonas naphthalenivorans CJ2 Nitrogen Nitrogen fixation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 0.854977347 0.906105568 0.834770434 0.896236078 0.847483972 0.869699069 0.809206819 0.842933232 0.858024579 0.842271242 0.827227841 0.90523165 0.84585804 0.879447983 0.877305809 151562371 mer Ochrobactrum anthropi ATCC 49188 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum anthropi; 0.975870571 0.977337939 0.970526677 0.964158019 0.934274734 0.980828636 0.937671616 0.958610689 0.974758729 0.953413389 0.947537489 0.94496894 0.910543803 0.931186921 0.9196598 0.94300605 0.983017375 0.998322971 302431104 xylg Streptomyces sp. SPB78 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 1.236157589 1.18381244 1.208623498 1.212489107 1.197318639 1.236614291 1.20887092 1.217470101 1.207048495 1.198989341 1.147228281 1.17780563 1.157333458 1.147880666 1.120500831 1.140782589 1.21389101 1.195535862 271962485 mannanase Streptosporangium roseum DSM 43021 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 1.097860468 1.073710353 1.100037142 1.087861686 1.07642585 1.097239064 1.083891568 1.098404619 1.092042339 1.093956251 1.064916019 1.087040416 1.066766108 1.032264103 1.020245419 1.067475339 1.107945052 1.105436273 35396182 one_ring_23diox Burkholderia sp. Cs1-4 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 1.06361829 1.037770336 1.022115321 1.032120819 0.992590691 1.020233715 0.986655226 0.995044076 1.019219634 1.025782501 0.999229865 1.010181858 0.991600422 0.969058815 0.944256266 0.982681855 1.009205183 1.031507467 27354699 hbh Bradyrhizobium japonicum USDA 110 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium diazoefficiens; 0.94645079 0.994038987 1.016079896 0.948966096 0.951009066 0.932574632 0.965250917 0.97798913 1.0090755 0.966365947 0.950247394 0.981687615 0.92902558 0.929768576 0.830303171 0.919347873 0.941131754 0.989627229 323366332 nifh uncultured microorganism Nitrogen Nitrogen fixation NA 0.802928609 0.827008603 0.810915124 0.807175226 0.836192394 344035304 mer Streptomyces violaceusniger Tu 4113 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces violaceusniger; 0.816087691 0.839473991 0.849589703 0.799370348 0.852249904 0.847899427 0.804097725 0.808393853 0.810234279 197624586 CsoSCA Cyanobium sp. PCC 7001 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanobium; 1.045725565 1.076374229 1.005681275 1.001220888 0.950114594 1.019201414 0.98375722 1.008869545 0.973847512 1.004829715 0.959954913 0.976613828 0.966107709 0.99229833 0.911227494 0.973783905 1.221403733 1.03022912 343917372 CsoS2 Thiorhodococcus drewsii AZ1 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiorhodococcus;species:Thiorhodococcus drewsii; 1.217849498 1.188165411 1.16067848 1.162702175 1.168768612 1.197500454 1.172449433 1.171824629 1.176019012 1.200819789 1.18043504 1.170562823 1.152100881 1.147056355 1.131302055 1.166110473 1.188758242 1.210862587 56680586 nitrilase Silicibacter pomeroyi DSS-3 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 0.899618075 0.839994435 0.829699869 0.85577689 0.861135792 0.897659946 0.861013982 0.887104435 0.86243844 0.833942501 0.821056369 0.864890225 0.844654728 0.859047617 0.861487078 0.918168856 228470190 fthfs Porphyromonas uenonis 60-3 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Porphyromonas;species:Porphyromonas uenonis; 0.851787467 0.885890408 0.817147197 0.875919461 0.835709851 0.844001537 0.816025993 0.85867176 0.852279279 0.819775607 0.856753354 0.809751323 0.827829583 0.870601917 0.879369447 312199150 bphF1 Frankia sp. EuI1c Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 0.99504192 1.011805143 1.100545637 1.017591653 1.011659488 1.043654026 0.990988061 0.975698361 1.04705392 1.020635077 0.97667001 0.99474538 0.973965624 0.968491045 0.94935885 1.013441201 1.029055501 1.005765013 112463609 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.885162707 0.849292069 0.862356613 0.927043448 0.88598464 0.847567225 0.913371266 0.920069078 0.88494411 0.872290587 0.879351 0.879186763 0.887144688 0.812259057 0.848459784 0.879571255 0.876053054 292834803 amyA Streptomyces sp. e14 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 0.939266185 0.978978032 0.960636219 0.916615921 0.916741929 0.902756631 0.836742912 0.923477807 0.896129073 0.922560751 0.86801694 0.897394412 0.815567199 0.865661981 0.79587942 0.859661632 0.859426677 0.943008931 111073807 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 0.837215833 0.826659523 0.842284334 0.880763646 0.855280321 0.872193426 0.850270855 0.884682662 0.828004922 0.829916909 0.884594365 0.784234864 0.805751323 0.893711549 0.854073857 251789624 pectinase (pectate_lyase) Dickeya zeae Ech1591 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya zeae; 1.15062107 1.098183555 1.081676251 1.08176503 1.071294372 1.100700374 1.062331764 1.102018594 1.111155809 1.104221388 1.112248122 1.096576036 1.021700288 1.082579555 1.053899581 1.063457897 1.077236334 1.120224355 67942375 pmoa Methylosinus acidophilus Carbon Cycling Methane Methane oxidation superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylocystaceae;genus:Methylosinus; 0.831913652 0.823194158 0.833808971 0.824071921 347759509 FBP_aldolase Gluconacetobacter xylinus NBRC 3288 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter xylinus; 1.073982657 1.084840742 1.068190937 1.114270509 1.082771995 1.070658761 1.125699994 1.090660991 1.073302335 1.066962384 1.085500611 1.109179998 1.098106777 1.056446666 1.065622781 1.084893616 1.07429586 1.053775763 351688391 fthfs Natronobacterium gregoryi SP2 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Natronobacterium;species:Natronobacterium gregoryi; 0.782709503 0.832242824 0.859781436 0.897240131 0.861634055 0.844687594 0.798274335 0.850323413 0.934284631 0.816971571 0.868782741 317169854 FBP_aldolase Mesorhizobium ciceri biovar biserrulae WSM1271 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium ciceri; 0.955268851 0.996466089 0.92237728 0.928483413 0.960789291 0.97634676 0.932680569 0.941691164 0.918623284 0.982125647 0.981474399 0.963897727 0.972298202 1.004492473 0.93191873 0.957166532 0.928464563 0.971800762 86573765 cellobiase Rhodopseudomonas palustris HaA2 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 0.795070619 0.785467489 0.765901086 0.78864805 0.850717614 299798760 RgaE Amycolatopsis mediterranei U32 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 1.17307928 1.13944472 1.074368567 1.117717558 1.073462077 1.114553206 1.066523016 1.0833322 1.101408298 1.084067478 1.086811038 1.089292856 1.061259675 1.088670775 1.050579226 1.079158433 1.130260843 1.098917347 162281747 urec Hoeflea phototrophica DFL-43 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Hoeflea;species:Hoeflea phototrophica; 0.801313034 0.805000839 0.828357054 0.821556079 0.853775823 0.811448898 0.846695907 0.859311526 0.798831988 0.826900087 0.804412006 0.803829542 0.826396281 247543430 cysI Paenibacillus sp. JDR-2 Sulfur Other NA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 1.078034069 1.065373254 1.043165281 1.026720095 1.066611021 1.078330936 1.058371138 1.03243112 1.044560966 1.029635284 1.046873928 1.03894877 1.048396156 1.052984308 1.039918951 1.05860287 1.053639457 1.071296821 226305479 cysJ Rhodococcus erythropolis PR4 Sulfur Reduction NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 1.283586173 1.265914307 1.240650922 1.26344505 1.22273303 1.230984368 1.24567947 1.257333794 1.25216814 1.224668719 1.221391736 1.272378561 1.196337117 1.215241402 1.191548591 1.212827231 1.240882449 1.23060468 359797908 phn Achromobacter arsenitoxydans SY8 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter;species:Achromobacter arsenitoxydans; 0.98038543 0.976750114 0.98438177 0.988657495 0.959638187 0.96204669 0.960885955 1.003209003 0.949865684 0.949857764 0.97256972 0.955558134 0.912355427 0.956280602 0.935321713 0.904998501 0.964979966 0.98776419 399540924 chnb Amycolatopsis mediterranei S699 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 0.844258909 0.83502594 1.037739682 0.877082068 0.862889461 0.862275398 0.840385556 0.825610041 0.830565267 0.833816171 0.784351412 0.846265423 0.912007705 0.809096724 0.828825283 0.847633258 270511371 ben_bcla Streptosporangium roseum DSM 43021 virulence NA NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 1.157640432 1.109151241 1.087235029 1.127046544 1.095830785 1.141856474 1.064662723 1.096479053 1.130626476 1.104573151 1.105994614 1.120512599 1.092588726 1.106916555 1.120354183 1.102717347 1.14057805 1.122884997 392379327 xyla Azospirillum brasilense Sp245 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum brasilense; 1.111247583 1.155521481 1.076513922 1.10905054 1.088612197 1.124974904 1.053342784 1.036953449 1.049816633 1.09184761 1.049738929 1.075946375 1.069628167 1.067460805 1.021920169 1.074786883 1.104708914 1.131818001 4633555 nosz uncultured bacterium ProB Nitrogen Denitrification NA superkingdom:Bacteria; 0.956866963 0.9448218 0.927827605 0.991620187 0.941839511 0.965724006 0.897257763 0.913011159 0.960141492 0.920405449 0.908795325 0.958243101 0.926681757 0.928170012 0.892106062 0.920031018 0.959337557 0.968523498 339021990 nitrilase Acetobacter tropicalis NBRC 101654 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acetobacter;species:Acetobacter tropicalis; 0.999213816 0.913384801 0.861681785 0.917269958 0.951527927 0.870544821 0.845039019 0.943732181 0.935148957 0.895531366 0.853161781 0.965431614 0.918254962 0.871582968 0.904530002 0.976601876 0.917726842 0.900049334 186476301 ben_bcla Burkholderia phymatum STM815 virulence NA NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 1.114328106 1.088911829 1.072487405 1.102810717 1.10181248 1.154930986 1.098262456 1.048855869 1.06890811 1.142037069 1.119036768 1.119330137 1.084747126 1.097176111 1.035371528 1.089368593 1.083857186 1.128258734 164456174 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 0.854569679 0.811633187 0.83548597 0.859077211 0.894285848 0.898932144 0.928641583 0.866586315 0.856022561 0.903026119 0.901015848 0.926890518 0.862104833 0.9178522 0.916299924 0.840279305 0.839068807 3367751 endochitinase Streptomyces coelicolor A3(2) Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 0.782978485 0.812340346 0.83183921 0.776458761 0.807299149 0.836680712 0.862684148 226227593 chrr Gemmatimonas aurantiaca T-27 Metal Homeostasis Chromium Detoxification superkingdom:Bacteria;phylum:Gemmatimonadetes;class:Gemmatimonadetes;order:Gemmatimonadales;family:Gemmatimonadaceae;genus:Gemmatimonas;species:Gemmatimonas aurantiaca; 1.133492548 1.119314062 1.135488391 1.15136599 1.116701197 1.123336487 1.133566868 1.097723223 1.138498141 1.125873089 1.094045953 1.11975762 1.099356398 1.078482341 1.074839003 1.114048617 1.155894932 1.099259642 116743229 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.505219936 1.463355445 1.45531337 1.476877361 1.447315771 1.474498529 1.445749744 1.477009334 1.462358082 1.441649688 1.446911106 1.481028463 1.426595806 1.425001335 1.434832667 1.446172521 1.461573842 1.412165403 376168365 amyA Lactobacillus gastricus PS3 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus gastricus; 0.761587395 0.847128584 0.856852808 0.805885084 0.796359365 0.849851736 0.813510257 0.823717626 0.81987348 134100191 terc Saccharopolyspora erythraea NRRL 2338 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 1.449829207 1.436787167 1.421221131 1.448446503 1.415411072 1.448178589 1.385906951 1.424988302 1.414183517 1.400986107 1.39502273 1.425331528 1.372419846 1.388630533 1.356475728 1.379261089 1.434987423 1.391323082 927653 chitinase Kurthia zopfii Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Planococcaceae;genus:Kurthia; 0.839436 0.815781802 0.843532516 0.827432529 0.821903554 0.817203066 0.809653497 0.833670297 425214 bphF1 Pseudomonas sp. Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria; 1.509575735 1.478889466 1.480954123 1.463316582 1.480524337 1.496588862 1.461009228 1.475064387 1.477579283 1.49815126 1.488894196 1.493157741 1.43824668 1.459882861 1.451513876 1.481590125 1.465786405 1.470855809 212536342 pme_Cdeg Penicillium marneffei ATCC 18224 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 0.94740032 0.80924052 0.86312988 0.806373534 0.798883647 0.82137717 0.810063718 0.862861597 0.865546587 0.894768198 0.827079509 167594175 pmoa uncultured bacterium Carbon Cycling Methane Methane oxidation superkingdom:Bacteria; 0.865312004 0.848699799 0.847742377 0.89104238 0.836847291 0.810348761 0.83516211 0.82174428 0.835822534 0.869749446 0.811868379 0.838710404 0.886589234 0.890014355 227214986 tehb Rhodococcus sp. AN-22 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 0.971158203 0.993894666 1.004896796 0.960585436 0.990554141 1.056050356 0.981913347 0.975069404 0.981296954 1.015432576 1.021940197 0.964565226 1.023723607 0.996031439 0.965446421 1.007583316 1.001303957 0.961683014 392379483 arylest Azospirillum brasilense Sp245 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum brasilense; 0.887015038 0.902490921 0.838957223 0.881193907 0.864165543 0.907795686 0.84046798 0.845646181 0.764239547 0.904438156 0.866060018 0.838441989 0.849453235 0.813744125 0.849041397 0.849476749 0.890129998 87311474 ppx Blastopirellula marina DSM 3645 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Blastopirellula;species:Blastopirellula marina; 0.791008181 0.811775033 0.862927759 0.816732093 0.838435906 0.844187011 0.844573857 0.884275943 0.830400076 0.864254482 0.823618457 0.844136241 0.848372676 0.850401432 30026304 ara Bifidobacterium longum Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium; 0.97475073 0.966661659 0.804586419 0.929643555 0.906530075 0.935501958 0.908830949 0.862345395 0.912008648 0.903554421 0.903984066 0.869247851 0.881880443 0.885560909 0.891340319 0.902558603 0.922780898 383642351 amyA Sphingomonas elodea ATCC 31461 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas elodea; 0.997567177 1.104520329 1.023650332 0.990433372 1.031690882 1.036871127 1.014664453 1.02371716 1.043436114 1.028689955 1.035483484 1.015318342 1.020291996 1.013272464 1.045268498 0.986626039 1.030852569 1.059321376 332592235 fthfs uncultured bacterium Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria; 1.057304283 0.97082468 1.013135634 1.038793966 1.055561924 1.033920291 1.04891013 1.04775552 1.032097729 1.032637324 1.016809345 1.004795004 1.007758967 0.973888183 0.950778254 0.977952429 1.037848914 1.023292829 115396660 cutinase Aspergillus terreus NIH2624 Carbon Cycling Carbon degradation Cutin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 0.77427872 0.819462215 0.855010335 0.80594012 285026915 tfda uncultured bacterium Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria; 1.343861768 1.310734448 1.296114958 1.326395079 1.267231509 1.340792482 1.294770039 1.309995314 1.327550444 1.296135392 1.296332918 1.3014049 1.251566454 1.280009024 1.229190076 1.274594997 1.332076516 1.282482039 259345403 tktA Silicibacter sp. TrichCH4B Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 0.837322472 0.922796961 0.888530315 0.822681465 0.911196891 0.847599107 0.928803283 0.881167349 0.806960099 0.985101864 0.91647415 0.864275391 0.806733319 0.861275258 0.877825475 1.00182176 50084262 ppk Acinetobacter sp. ADP1 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 0.858225855 0.830575184 0.819536474 0.887446855 0.853838409 0.829277469 0.882837767 0.872498343 0.844653935 0.849270296 0.85371227 0.806096255 0.793030291 0.846249992 0.823610626 0.809946774 0.784229235 354956662 cmci Bradyrhizobium japonicum USDA 6 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 0.819140635 0.84559727 359778630 terc Arthrobacter globiformis NBRC 12137 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter globiformis; 1.050737921 1.008051904 0.999481154 1.062972113 1.011864618 1.018314247 1.024076251 1.057178565 1.040190303 0.970257489 0.991355328 1.036786976 1.007442165 0.993560131 0.970128023 1.003899429 1.026302761 1.001163331 215421978 amyA Nostoc punctiforme Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc; 0.96027043 0.831009443 0.963006043 0.827082816 0.831220925 0.872464008 0.887865432 161579539 ppk Methylococcus capsulatus str. Bath Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylococcus;species:Methylococcus capsulatus; 1.197275325 1.150449574 1.204151756 1.2245586 1.157511095 1.172214706 1.154755676 1.200194065 1.188982883 1.175607516 1.173807516 1.203142952 1.159901554 1.163113752 1.147125374 1.156058244 1.202033211 1.154492282 126436366 mhpa Mycobacterium sp. JLS Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 1.147885078 1.129930408 1.134682394 1.165348254 1.137756091 1.154727422 1.116372216 1.148900746 1.139494678 1.137430046 1.147743874 1.163014604 1.105612815 1.160421834 1.123377399 1.138976953 1.157843259 1.076182128 23821270 aoxb Thiomonas sp. VB-2002 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Thiomonas; 0.832817139 0.886986238 0.817677945 0.798646078 0.849404089 0.887502724 0.820518069 0.837743364 0.860335933 0.865329116 0.854050314 0.833909823 0.859216342 0.851538995 0.852909708 145306255 cmci Salinispora tropica CNB-440 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora tropica; 1.027250856 1.034725821 1.011070375 0.976294036 0.999658152 1.039315327 0.971905053 0.940901438 0.958491574 1.05023241 1.010747578 0.993970816 0.967062253 0.977498099 0.883849657 0.96214594 0.969218927 1.032735551 222353995 aps_apra uncultured bacterium Sulfur adenylylsulfate reductase NA superkingdom:Bacteria; 0.829331908 0.878736291 0.91097425 0.8488499 0.796866181 0.833350862 0.891989935 0.833260987 0.824062128 398656531 mdlb Phaeobacter gallaeciensis DSM 17395 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 0.752685499 0.811118665 0.831763207 0.792496394 334860863 ppx Frankia symbiont of Datisca glomerata Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 1.373630876 1.352530536 1.338951895 1.34489363 1.34003587 1.378033423 1.324132149 1.341236623 1.32955657 1.346956138 1.331753879 1.336971855 1.302417779 1.321274913 1.231779567 1.296794604 1.337293424 1.314880505 28971836 xylg Sphingomonas sp. P2 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 1.041877759 0.993115679 1.008234219 1.014748104 1.038943509 1.022301741 1.046537494 1.064561254 1.032989134 1.022494103 1.047381622 1.015378645 0.995373617 0.978997036 0.953188631 0.962229881 1.006621785 0.993394338 84510815 TIM Loktanella vestfoldensis SKA53 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Loktanella;species:Loktanella vestfoldensis; 1.035130644 1.029919831 0.993506352 1.008765435 1.084102488 0.975358232 0.968026235 0.970964704 0.978509226 0.981904212 0.986328064 1.167149715 1.012016801 0.954380507 0.965870536 0.970068431 1.007719824 0.980465467 242814606 protease_cysteine_fungi Talaromyces stipitatus ATCC 10500 Carbon Cycling Carbon degradation protein superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 0.849534335 0.90757145 0.913380029 0.848283045 0.883342199 0.894880423 0.894847298 0.849004745 0.860188414 0.924084881 0.821668322 0.855523195 0.851916479 0.847472141 0.873512631 0.852698811 0.856893632 0.880083531 338170990 aln Cupriavidus necator N-1 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 0.910398887 0.892956916 0.922855167 0.894368116 0.832445363 0.843578266 0.830735579 0.876590741 0.95111158 0.868294544 0.818741632 0.838083983 0.873857952 0.872755345 0.829669148 0.898582065 0.907566562 400198673 nitro Achromobacter piechaudii HLE Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter;species:Achromobacter piechaudii; 1.289634654 1.262911065 1.263783496 1.316333299 1.250654987 1.267012906 1.255238297 1.279003081 1.299989247 1.266991108 1.257104844 1.283176501 1.249060818 1.234064719 1.247660329 1.260203296 1.288554705 1.255700308 256648262 nfsb_2 Acetobacter pasteurianus IFO 3283-32 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acetobacter;species:Acetobacter pasteurianus; 0.761543141 0.832205095 0.797321048 0.81002907 332592191 fthfs uncultured bacterium Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria; 0.974741296 0.954772154 1.02838121 1.02739424 1.023414228 1.055444374 0.983490393 1.007155916 0.963162832 1.142254123 0.970583974 0.980682762 0.98437259 0.96656921 0.918470694 0.959322208 0.989538051 0.97543718 85705316 tktA Roseovarius sp. 217 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 1.250144516 1.231004386 1.187354318 1.252024442 1.233441244 1.235403328 1.197623995 1.193477857 1.212876592 1.202519201 1.211966295 1.217243073 1.200578229 1.166127611 1.166286338 1.228153306 1.265131125 1.194981224 353190529 mer Mycobacterium rhodesiae JS60 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 0.992792977 0.966000551 0.967803922 0.934875878 0.991057591 0.984551319 0.992157602 1.002363756 0.994573211 0.963216512 0.985697206 0.990032714 0.938024481 0.922829043 0.838058167 0.8622971 0.95911143 62003539 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.939014933 0.937135886 0.886625833 0.982418991 0.908087559 0.948091905 0.923422581 0.889038324 0.932861653 0.915178145 0.946869838 0.938908138 0.87555137 0.89514996 0.865754773 0.908753401 0.950601092 0.939970909 225019681 ppk Clostridium methylpentosum DSM 5476 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium methylpentosum; 0.870265468 0.900509266 0.836801868 0.915578438 0.875811814 0.895595082 0.892134413 0.891001147 0.871674803 0.867303306 0.900130686 0.837043908 0.866713638 0.908194442 365893948 catechol Bradyrhizobium sp. STM 3843 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.983444396 0.906829823 0.94407557 0.956242706 0.950338933 0.961293941 0.940237945 0.928923187 0.936714445 0.933543371 0.941133898 0.931172781 0.918514011 0.89882791 0.85959765 0.887944114 0.965728715 0.940509884 403655512 catechol Mycobacterium vaccae ATCC 25954 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vaccae; 0.90917607 0.980069469 0.863528774 0.923923975 0.907832462 0.918813942 0.884807122 0.90202173 0.898646368 0.913017429 0.919631433 0.840053512 0.888748339 0.807314891 0.929539921 0.962722851 222880089 ppx Campylobacter rectus RM3267 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter rectus; 1.017057069 1.008321847 0.992929885 1.035538834 0.971512698 0.986564218 0.980663312 1.017395447 1.003694521 0.962904198 0.97608094 0.985789974 0.969405076 0.98132829 0.949248877 0.972225048 1.029876179 0.972708647 237786471 ppx Corynebacterium kroppenstedtii DSM 44385 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium kroppenstedtii; 0.950979515 0.989809087 0.891294234 0.941784905 0.888214875 0.934608861 0.902002435 0.912941839 0.952359361 0.98257902 0.900541055 0.909300626 0.854166976 0.954998736 0.810886755 0.911834452 0.955001711 0.975275395 332670257 ara Cellulomonas fimi ATCC 484 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas;species:Cellulomonas fimi; 1.235162175 1.238768743 1.198435066 1.226816302 1.233249926 1.264045229 1.187901302 1.192152253 1.16797511 1.227032271 1.206172072 1.223561223 1.208776128 1.207210937 1.175183603 1.22386082 1.218740895 1.227589495 153963016 sqr uncultured bacterium Sulfur Sulfide Oxidation NA superkingdom:Bacteria; 0.85258902 0.857667941 0.867490066 0.902443484 0.855821472 0.80524954 0.884577849 0.903360395 0.856199362 0.8518565 0.849199136 0.885662162 0.815203106 0.819344657 0.814801697 0.839615995 0.856366652 25169134 hdno Arthrobacter nicotinovorans Organic Remediation Aromatics Heterocyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 1.157527866 1.125776194 1.158125603 1.158698235 1.157349707 1.155280781 1.1573222 1.183991845 1.158055441 1.12562115 1.128427501 1.149642756 1.131676921 1.085246004 1.098036701 1.110926693 1.161948577 1.115038181 207725024 proO Ralstonia solanacearum MolK2 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 1.071990588 1.000257404 0.995645118 1.025211776 1.018297887 0.981139676 1.006139976 1.042066842 1.024730287 1.001100361 0.984690212 0.999874062 1.000428929 0.940200363 1.012236769 0.954570536 1.024186094 0.939300336 32351448 nitrate_reductase Dunaliella salina Nitrogen N Assimilation NA superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Chlorophyceae;order:Chlamydomonadales;family:Dunaliellaceae;genus:Dunaliella; 0.936010399 0.941394533 0.923433723 0.960423903 0.936171368 0.916672656 0.961222166 0.938923828 0.87545707 0.878547537 0.902886914 0.849698906 0.863831966 0.866057835 0.830237673 0.831371078 0.901391585 0.887117769 340001140 endoglucanase Salmonella bongori NCTC 12419 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella bongori; 0.820545678 0.818336211 0.80816073 0.795681254 0.814816491 0.850241554 0.792293547 118436437 arsc Stappia aggregata IAM 12614 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 0.907187738 0.832864571 29293410 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.856770787 0.824521668 0.892633513 0.877449175 0.905506773 0.82906488 0.887426832 0.873747048 0.833367951 0.884134485 0.827739692 0.921791536 0.821040966 0.831717885 0.815751879 0.844548576 0.897341732 88771705 rubisco Thiovibrio halophilus Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Thiomicrospira; 1.064593819 1.072040512 1.081048535 1.072389188 1.075859647 1.088943541 1.056807069 1.03527639 1.057836619 1.065256001 1.038470001 1.062495608 1.05662378 1.03922372 0.985827343 0.989610168 1.072007794 1.056528968 315262253 cysJ Mycobacterium sp. Spyr1 Sulfur Reduction NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 1.17629022 1.133253312 1.09891148 1.138737819 1.083159373 1.136914245 1.100587407 1.102640322 1.102629882 1.087794218 1.09711059 1.109278725 1.095285194 1.085396757 1.102644617 1.117595276 1.145178833 1.095165552 153005485 pectinase (pectate_lyase) Anaeromyxobacter sp. Fw109-5 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter; 0.806708811 0.859521129 0.802962645 0.848217357 0.844667564 0.810308813 0.772827108 0.809235705 0.876309349 0.873195445 0.907256274 309311742 glx Puccinia graminis f. sp. tritici CRL 75-36-700-3 Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;order:Pucciniales;family:Pucciniaceae;genus:Puccinia;species:Puccinia graminis; 0.88605275 0.89669801 0.881448859 0.881454509 0.898497984 0.928704962 0.873522846 0.909136118 0.903146428 0.927748711 0.859336974 0.897170022 0.913056162 0.885978788 0.88864812 0.875379276 0.949806364 0.971578756 296114544 tktA Gluconacetobacter hansenii ATCC 23769 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter hansenii; 0.978381583 0.99317595 0.968184353 1.007365018 1.006855053 1.014344144 0.962748985 0.932491035 0.95064893 0.982612193 0.996592112 0.998363798 0.963904363 0.966122493 0.942073915 0.986862491 1.020458485 0.963265989 73762580 endochitinase Isaria javanica Carbon Cycling Carbon degradation Chitin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Cordycipitaceae;genus:Isaria; 0.91453611 0.912585762 0.940469322 0.986040161 0.872376717 0.899244661 0.92606539 0.975779127 0.959682219 0.929556841 0.868553479 0.933282961 0.868740808 1.021940571 0.877069825 0.871410349 0.946043142 0.926352536 389778723 amyA Rhodanobacter spathiphylli B39 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Rhodanobacter;species:Rhodanobacter spathiphylli; 1.155058481 1.167487461 1.088016899 1.140876061 1.078305613 1.182778402 1.081967314 1.108321414 1.124283735 1.142752714 1.102828535 1.105775039 1.08180896 1.131781234 1.057524703 1.11291553 1.146930849 1.169445647 312796291 badh Burkholderia rhizoxinica HKI 454 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia rhizoxinica; 0.843592883 0.846747632 0.825946645 0.882475076 0.886461047 0.807961514 0.876930037 0.919521201 0.887311308 0.869077781 0.836911693 0.861196733 0.838537527 0.916456688 0.886541403 71383726 nasa Synechococcus sp. UW105 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 0.803304855 0.866968098 0.834427145 0.803773658 0.807350578 0.824643643 0.849070437 0.815931804 403404393 mult_ring_12DiOx Gordonia namibiensis NBRC 108229 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia namibiensis; 0.859798645 0.83375172 0.884455945 0.846900662 0.817160269 0.868662511 87285056 ccmL Blastopirellula marina DSM 3645 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Blastopirellula;species:Blastopirellula marina; 0.857231818 0.860624261 0.881550123 0.857419925 0.93876653 0.865740142 0.914434954 0.89002184 0.853317612 0.889830086 0.906220255 0.887382323 0.853641774 0.850104752 0.79634626 0.830042225 0.866908843 288895439 FBP_aldolase Allochromatium vinosum DSM 180 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Allochromatium;species:Allochromatium vinosum; 0.899016436 0.873293149 0.865113554 0.877569615 0.877020538 0.89864788 0.884288834 0.872087871 0.851903702 0.850979353 0.850106389 0.875902012 0.825621156 0.810659425 0.832546996 0.87732564 0.878571111 357937696 poba Burkholderia sp. YI23 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 0.954045633 0.943543227 0.867552727 0.953721755 0.938897401 0.950464845 1.030246387 0.904674463 0.927635808 0.952791147 1.01886682 0.96749471 0.980441698 0.923799092 0.86836203 0.928062933 0.959436577 0.924657639 71383816 nasa uncultured bacterium Nitrogen Assimilatory N reduction NA superkingdom:Bacteria; 0.88410425 0.892939746 0.851554832 0.922840897 0.92258634 0.891914836 0.839385701 0.864450899 0.906460726 0.851701855 0.911678485 0.822940185 0.828538623 0.850649855 0.907774125 0.920499234 374104919 pcpe Streptomyces hygroscopicus subsp. jinggangensis 5008 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces hygroscopicus; 1.117914987 1.154035972 1.138412418 1.163378344 1.119801283 1.104584029 1.107524274 1.119536386 1.103835654 1.102851327 1.128771161 1.150544923 1.131236472 1.094586538 1.109717106 1.097917966 1.125976886 1.090066322 325293721 xylanase Agrobacterium sp. H13-3 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium; 0.864472991 0.785208914 0.880284908 0.829508277 0.842937459 0.812251896 226358207 amyA Deinococcus deserti VCD115 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus deserti; 0.848387002 0.844483981 0.860622926 0.827875154 0.859394872 0.836496522 0.864311452 0.838999022 0.822048844 0.806380695 0.871510965 0.827400763 0.88389149 104783508 alginase Pseudomonas entomophila L48 Carbon Cycling Carbon degradation Alginate superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas entomophila; 1.458001249 1.420271397 1.410402932 1.442555552 1.391758773 1.439094264 1.401941605 1.413596737 1.416080158 1.410258065 1.404686683 1.413655373 1.37283118 1.362628428 1.341430941 1.396284478 1.433910645 1.404025173 262076772 amyA Haliangium ochraceum DSM 14365 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Haliangiaceae;genus:Haliangium;species:Haliangium ochraceum; 1.032372317 1.063372051 1.033589508 1.006079325 1.028354668 1.025068041 1.041073257 1.022574731 1.03327327 1.075998803 1.073155933 1.061700444 0.999813906 1.021415078 1.016218077 1.006153168 1.040386098 1.071601907 110826476 aps_apra uncultured Thiobacillus sp. Sulfur adenylylsulfate reductase NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus; 0.912641097 0.82708426 116266954 cysJ Mycobacterium smegmatis str. MC2 155 Sulfur Reduction NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 0.959692198 0.960392153 0.982771015 0.929404071 0.978456044 0.950517324 0.952404421 0.952617943 0.9617835 0.944012088 1.005804607 0.9155925 0.927569881 0.943563296 0.923809644 0.889662013 0.94171656 0.97578585 84388281 FBP_aldolase Oceanicola batsensis HTCC2597 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola batsensis; 1.148173931 1.065597617 1.117516857 1.088347088 1.06776148 1.057072862 1.001758492 1.028987682 1.106109346 1.076370108 1.092112745 1.085869309 1.097603586 1.05812751 1.021612574 1.034498944 1.135168935 1.08746025 2970042 exoglucanase Aspergillus aculeatus Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 0.920619816 0.865322991 0.873038326 0.898329481 0.88506008 0.8233462 0.910022255 0.899961596 0.844464869 0.881512529 0.891345578 0.879011332 0.877595579 0.799186754 0.916663923 0.888274643 254391488 amyA Streptomyces clavuligerus ATCC 27064 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces clavuligerus; 0.874363564 0.906603561 0.866052868 0.875329128 0.895711597 0.835491996 0.897723582 0.902893459 0.800907282 0.823095447 0.92148559 0.91379524 187726416 poba Ralstonia pickettii 12J Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 1.037305452 1.008371357 0.997850334 1.011479535 1.0518907 1.029893766 1.046862572 1.03483126 1.0608025 1.056085982 1.03265184 1.01716395 0.999098047 0.934959142 0.954448544 0.959842199 1.029936317 1.01930286 311887415 nhh Rhodococcus equi 103S Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus equi; 1.233460317 1.216184188 1.187025011 1.24658992 1.19617135 1.234822332 1.205730213 1.232133573 1.201058684 1.184965378 1.196703619 1.199801884 1.178406076 1.185663971 1.208034728 1.191775882 1.250278884 1.206725936 359836138 cda Actinoplanes sp. SE50/110 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes; 0.911651256 0.99957217 0.92823873 0.915163946 0.884089587 0.922648394 0.889138443 0.917244483 0.935225899 0.921772527 0.88056354 0.898465798 0.864995378 0.862273006 0.878788063 0.841378945 0.982764166 0.921289356 27372237 endochitinase Alteromonas sp. O-7 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas; 0.827792768 0.963677399 0.994316929 0.935761389 0.801590669 0.849682756 0.874866136 0.812867722 0.88928826 372488227 PRK Dechlorosoma suillum PS Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azospira;species:Azospira oryzae; 0.793850526 0.860020471 0.820721829 0.799884917 0.814739777 0.786343757 0.82585618 0.890998286 284797303 nosz Neisseria subflava NJ9703 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria subflava; 0.875950729 0.90654278 0.829102597 0.887066195 0.852780563 0.905427468 0.890438778 0.865721544 0.919698218 0.893559858 0.868414581 0.927280467 0.876842899 0.861074152 0.871422541 0.880833747 0.917116824 0.875710953 134268301 bphF1 Geobacillus thermodenitrificans NG80-2 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus;species:Geobacillus thermodenitrificans; 0.80144569 0.823887299 0.793483543 0.831018512 0.797409272 0.853364659 398114664 xylj Pseudomonas sp. GM17 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 1.05840136 1.036031291 0.99760332 1.058814799 1.027492108 1.027627181 0.993547518 1.005420406 1.021163212 1.010876047 0.993777202 1.015909747 1.003484941 0.994441674 0.993817801 1.021094492 1.047933665 1.014556833 375056388 mer Rhizobium sp. PDO1-076 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 0.965488204 0.944725103 0.898523103 0.944934631 0.853026122 0.954529866 0.848293074 0.874898002 0.951671381 0.898239376 0.869151381 0.962526943 0.846926995 0.894285469 0.868107253 0.857250471 0.96300595 0.947442987 397733546 linc Rhodococcus sp. JVH1 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 0.842071198 0.780794288 0.866049928 0.822601884 0.888584323 0.812452341 118029817 aln Burkholderia phymatum STM815 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 1.299087211 1.260295185 1.26211701 1.294456541 1.372893622 1.321608299 1.295301994 1.299805949 1.26541157 1.259053966 1.279441238 1.273004717 1.255982035 1.22544384 1.221150289 1.243669299 1.310031621 1.231802288 408779960 bphd Mycobacterium kansasii ATCC 12478 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium kansasii; 0.918885048 0.888168755 0.940522502 0.904694809 0.868385063 0.886251077 0.878120257 0.872061554 0.900674441 0.877398315 0.866775857 0.870906577 0.846677232 0.880756571 0.829843806 0.833407901 0.854127425 0.923855661 381179493 amyA Treponema saccharophilum DSM 2985 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema saccharophilum; 0.932015201 0.909057369 0.893274013 0.874999519 0.929891905 0.918111122 0.832991177 0.850090821 0.887728862 0.891084081 0.854081117 0.847857301 0.865727599 0.875414688 0.847452939 0.93864428 0.924825802 363423138 amyA Rhodococcus pyridinivorans AK37 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus pyridinivorans; 0.840080249 0.834796044 0.795500674 0.826103864 117647746 acetylglucosaminidase Acidothermus cellulolyticus 11B Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Acidothermaceae;genus:Acidothermus;species:Acidothermus cellulolyticus; 1.025778146 0.947386497 0.976966199 0.996032382 0.943382329 1.015743989 0.908351324 0.945034389 0.972752868 0.964507853 1.030222767 0.943026822 0.934532915 1.001217789 0.905892317 0.967546551 1.003675757 0.949963729 332591851 mcra uncultured archaeon Carbon Cycling Methane Methanogenesis superkingdom:Archaea; 1.009963906 0.996982383 1.004402705 1.036118639 0.958699452 0.999191965 0.92328872 1.003457093 1.018261286 1.025123101 0.989166478 0.976067395 0.977028999 0.995377326 0.999951374 0.972687445 1.009009664 0.963126932 333900391 amyA Pseudomonas fulva 12-X Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fulva; 0.826713494 0.793268711 0.841745765 0.850539297 0.829054518 0.853500835 0.821122347 0.80791909 291197210 exoglucanase uncultured fungus Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi; 0.912939398 0.971186311 0.889186475 0.935479228 0.928422453 0.933020056 0.887076087 0.871247867 0.847049886 0.950626966 0.941105525 0.905011711 0.858339106 0.958675037 0.825824589 0.899999714 0.936358905 0.960669864 269837149 catechol_b Sphaerobacter thermophilus DSM 20745 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Chloroflexi;class:Thermomicrobia;order:Sphaerobacterales;family:Sphaerobacteraceae;genus:Sphaerobacter;species:Sphaerobacter thermophilus; 0.80951517 0.867306065 0.846251508 0.907038485 0.896497379 0.89231448 0.906641413 0.878012849 0.851530473 0.837345911 0.906488012 0.845004375 0.912402887 0.840762962 0.809751396 0.846447512 0.834416519 0.862721624 85672433 nifh Roseovarius sp. 217 Nitrogen Nitrogen fixation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 1.1915126 1.204545136 1.13729256 1.180689619 1.16126685 1.169129043 1.156128359 1.139383121 1.153592395 1.157451832 1.158813474 1.177387903 1.115098106 1.109679884 1.106326892 1.118115285 1.159265183 1.170952102 189210447 cellobiase Pyrenophora tritici-repentis Pt-1C-BFP Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 0.921907995 0.940330482 0.841506768 0.942632304 0.879271083 0.897037338 1.045314759 0.906398753 0.925105803 0.950311414 0.878384771 0.917165115 0.92057412 0.89459396 0.87861443 0.907854423 0.940001183 0.872313725 198262243 alkb gamma proteobacterium HTCC5015 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 0.913158258 0.879784655 0.932368014 0.951527467 0.954835448 0.912653979 0.965090653 0.964018764 0.93657546 0.93534048 0.918025986 0.935137524 0.897570731 0.85008985 0.870009877 0.854410575 0.925781107 0.860215706 251771534 glucoamylase Leptospirillum ferrodiazotrophum Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Nitrospirae;class:Nitrospira;order:Nitrospirales;family:Nitrospiraceae;genus:Leptospirillum; 0.781811055 0.816871867 349702037 atzb Gluconacetobacter europaeus LMG 18494 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter europaeus; 0.911209922 0.859784589 1.035169405 0.916684169 0.973065517 0.940099391 0.957617501 0.926859671 0.945132051 0.938561489 0.918465764 0.984164929 0.93350636 0.916335564 0.888373214 0.932184558 0.923257745 0.914953903 295430610 cellobiase Caulobacter segnis ATCC 21756 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter segnis; 0.848750777 0.803940137 157285722 napa uncultured bacterium Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria; 0.8351364 0.810841363 0.803885976 0.849298922 0.83642359 0.8462874 0.850646738 0.793435935 0.77173207 0.806959674 0.846122965 376372774 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.043844135 1.009752845 1.053439598 1.055633349 1.020660576 1.043608834 1.047473202 1.101946278 1.032626817 0.984684272 1.025180241 0.989956497 0.985310908 0.95067777 0.974640759 0.995618983 1.044407887 1.005479756 33568304 chrr Bordetella bronchiseptica RB50 Metal Homeostasis Chromium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella bronchiseptica; 1.03947804 0.993652086 1.019068306 1.05567438 0.946859932 0.98051337 0.968653872 0.986858333 1.0407668 1.014911018 0.969692476 1.016143095 0.979054011 0.963496206 0.938244111 0.992877094 1.059267209 0.998790446 260220981 ppx Curvibacter putative symbiont of Hydra magnipapillata Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Curvibacter; 0.946047946 0.932995131 0.921530245 0.866345754 0.885877341 0.893380468 0.874045003 0.926995766 0.91249821 0.866998991 0.886037635 0.932556188 0.886191029 0.859433712 0.837820012 0.848467304 0.900642118 0.890748099 313897086 codh Selenomonas sp. oral taxon 137 str. F0430 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas sp. oral taxon 137; 1.27689423 1.234311658 1.194989726 1.255313286 1.208831747 1.217525555 1.220795889 1.243148554 1.225093347 1.205716318 1.199527038 1.241170238 1.195354975 1.191697065 1.195702636 1.222992509 1.232996213 1.200610033 261358044 nitrate_reductase Verticillium albo-atrum VaMs.102 Nitrogen N Assimilation NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticillium;species:Verticillium alfalfae; 0.948754367 0.947249436 0.947796884 0.993939559 0.960020062 0.919760304 0.98377188 0.962844257 0.933484089 0.966312949 0.961720044 0.950636415 0.925421492 0.930361372 0.887638358 0.887684923 0.920777848 0.938165376 169242338 ppk Mycobacterium abscessus Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 1.173207722 1.179685456 1.147842017 1.208347163 1.139032653 1.189411194 1.128479355 1.145895607 1.141064636 1.148517069 1.123943754 1.148001339 1.11575982 1.13704623 1.113104922 1.152979957 1.186093274 1.171790117 338854791 fthfs Weissella koreensis KACC 15510 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Leuconostocaceae;genus:Weissella;species:Weissella koreensis; 0.805865677 0.778830626 351645555 bph Magnaporthe oryzae 70-15 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 0.955429558 0.923736946 0.944100331 0.942745738 0.953672251 0.938589715 0.916579389 0.877964197 0.958962287 0.919755338 0.891675996 0.908008393 0.915975729 0.885409911 0.869962808 0.85901488 0.943163692 0.917888175 116694822 xlnd Ralstonia eutropha H16 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 0.770747027 0.808795465 0.794426212 0.790512561 0.826774331 0.7860522 0.821785825 0.785939232 0.86459372 375139522 cutinase Mycobacterium rhodesiae NBB3 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 0.787930501 0.896307272 0.845399859 0.816754244 0.816549045 0.825626895 0.792220443 0.86729993 0.806233018 0.825761145 296030171 CsoS1_CcmK Thermincola potens JR Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Thermincola;species:Thermincola potens; 0.933359586 0.958915538 0.988147363 0.936894849 0.983331836 0.919114872 0.93737083 0.959517181 0.933566541 0.909704881 1.0022856 0.934832642 0.958542985 0.878403333 0.909082942 0.969574988 0.952981253 18558988 nirs uncultured temperate forest soil bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.99702117 1.022073431 0.992163803 0.97411758 0.980968882 1.014316688 0.965800871 0.962491951 0.988017447 0.980170624 0.976789303 0.946351437 0.913047336 0.94563603 0.854352372 0.930328205 0.962251309 1.013315669 375076695 amyA Paenibacillus sp. Aloe-11 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 0.913828945 0.988041768 0.931570279 0.927950668 0.925581412 0.906389121 0.877251356 0.904009614 0.897561192 0.877473447 0.861544342 0.887999168 0.865063699 0.856851274 0.8596772 0.921906151 0.969372255 953231 catechol_b Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 1.321060796 1.303891797 1.289701439 1.292034625 1.261185556 1.297606384 1.252167248 1.263441253 1.252238632 1.261019535 1.272883025 1.278037233 1.247538521 1.238587966 1.226931955 1.266708129 1.291187346 1.281080332 121590136 dsra Halorhodospira halophila SL1 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Halorhodospira;species:Halorhodospira halophila; 0.909839488 0.914287323 0.868978791 0.89133167 0.84974279 0.821425686 0.810997529 0.878915694 0.884789887 0.891626933 0.846511961 0.850072964 0.827972813 0.848316108 0.818567491 0.904971195 0.930173971 21220367 pme Streptomyces coelicolor A3(2) Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 1.081827068 1.10821348 1.067642539 1.061136607 1.096121334 1.113965516 1.071145064 1.030890685 1.099477051 1.060771128 1.102468097 1.073183255 1.049705625 1.051854998 1.080082889 1.060599677 1.101960333 1.065142472 184194700 mhpc Burkholderia phymatum STM815 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 0.904090655 0.896193444 0.895552272 0.953584495 0.88076691 0.856325634 0.843999105 0.881320491 0.836730746 0.835872014 0.872837772 0.853361533 0.8257967 0.865334216 0.906787405 0.827400506 313141026 amyA Bifidobacterium bifidum NCIMB 41171 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium bifidum; 0.805874498 0.871677787 0.807453737 0.872117455 0.927365463 0.802916752 0.854175582 0.8185746 0.888829913 229591217 arsc Pseudomonas fluorescens SBW25 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 1.035418879 1.038281994 1.025311205 1.036006134 1.004673501 1.003133209 0.981660657 1.001494124 1.004884855 1.012426582 0.987416742 1.009011037 0.996791633 0.987663314 0.967301818 1.00634689 1.039389089 1.02062817 258560757 amyA Corynebacterium genitalium ATCC 33030 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium genitalium; 1.072362629 1.075093712 1.05330865 1.079641259 1.064364098 1.064811927 1.034225942 1.055527485 1.028040145 1.050162358 1.038661128 1.059139329 1.031284954 1.023728882 1.033438872 1.045049744 1.094845944 1.080452079 359305355 catechol_b Arthrobacter globiformis NBRC 12137 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter globiformis; 0.940948176 1.001467734 0.960663594 0.991012235 0.988936193 0.978296473 0.966148508 1.015771551 0.984402187 0.974700097 0.93554769 0.981006113 0.948512174 0.957299191 0.979342418 0.971490659 0.996705344 1.006587837 365891074 fccab Bradyrhizobium sp. STM 3809 Sulfur Sulfide Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.977688972 0.999037809 0.926517974 0.9423344 0.917890047 0.96645397 0.925992809 0.930553343 0.954469855 0.946333375 0.93391368 0.924172701 0.919559798 0.93121448 0.908797166 0.943243938 1.00378379 190343178 ppx Candidatus Nitrospira defluvii Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Nitrospirae;class:Nitrospira;order:Nitrospirales;family:Nitrospiraceae;genus:Nitrospira; 0.866960323 0.872219112 0.812737117 0.843484964 0.906969119 0.830574102 0.842684646 0.827627034 0.828806263 0.824622947 0.904337854 116197288 p450aro Chaetomium globosum CBS 148.51 Organic Remediation Aromatics polycyclic aromatics superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 0.847840039 0.801767067 0.812154175 0.826063801 0.817093118 0.867423593 0.852347467 0.802475698 0.906212152 88643212 dsrB Desulfohalobiaceae bacterium Benz Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfohalobiaceae; 0.959026923 0.93925736 1.011300229 0.980995465 0.930609907 1.010150029 0.892098341 0.986600045 0.983126866 0.95863647 0.954840119 0.951544846 0.910053132 0.962112912 0.909670075 0.901807426 0.980893421 0.98623426 295689836 phytase Caulobacter segnis ATCC 21756 Phosphorus Phytic acid hydrolysis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter segnis; 1.021827476 1.055588758 1.001733443 1.055779891 1.038717882 1.07185594 1.005490063 1.045518861 1.028111508 1.064704521 1.052546531 1.030236659 1.042986284 1.016607306 1.013077226 1.047295584 1.063821757 1.042104319 86135998 cmci Roseobacter sp. MED193 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 0.871370885 0.847325688 0.853770079 0.82927355 0.815785473 0.783802579 0.838482262 0.825396725 0.882183554 0.842460282 359254216 ara Mesorhizobium alhagi CCNWXJ12-2 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium alhagi; 1.025173236 0.985972778 1.008474125 1.034064721 0.981271524 1.010965527 0.956054477 0.96259013 1.011942806 1.015657044 1.027892018 1.01244976 0.99328448 0.976224059 1.040667706 1.030068996 1.06627629 1.004309382 311229240 mhpb Frankia sp. EuI1c Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 1.013273833 1.005164409 0.986641041 1.051090724 0.970042215 1.036460198 0.949560125 1.034624371 1.039194692 0.988590682 0.975037694 1.04595749 0.981066656 0.982539022 0.982364092 0.97320218 1.034199146 0.970287493 229489177 cdh Rhodococcus erythropolis SK121 Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 1.097036135 1.073606041 1.030877825 1.062241178 1.036654668 1.068701088 1.007283515 1.007347469 1.041598774 1.056539747 1.039822945 1.036590129 0.990292888 1.064511098 0.981315233 1.021007136 1.035191209 1.088508983 372268833 beta_agarase Alteromonas sp. S89 Carbon Cycling Carbon degradation Agar superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Microbulbifer;species:Microbulbifer agarilyticus; 1.387455884 1.373407281 1.361765819 1.370882315 1.341647224 1.377951768 1.337947963 1.368181652 1.353408883 1.335472534 1.343531049 1.340678778 1.325077002 1.292267976 1.297702198 1.332963064 1.382140381 1.341344379 374413666 dsra uncultured prokaryote Sulfur sulfite reduction NA 1.027556052 0.996933275 0.99243643 1.017993257 0.947933474 1.000780278 0.929005074 0.964091635 1.009607865 0.991713375 0.96458108 0.986176002 0.963283275 0.951421352 0.911696813 0.978912619 1.027274987 1.00448234 328803688 chitinase Aeromonas veronii B565 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas veronii; 0.900645894 0.972615637 0.934236092 0.933197721 0.931456034 0.962334558 0.902577094 0.921745394 0.867231251 0.941071914 0.892389444 0.908789565 0.930121417 0.86219992 0.866142813 0.952012364 0.932846347 0.967355453 302547426 xylj Streptomyces hygroscopicus ATCC 53653 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces himastatinicus; 1.0813112 1.051889405 1.044067471 1.092193267 1.084028334 1.085681963 1.035838393 1.041158172 1.03862075 1.051783363 1.032657491 1.090557615 1.050432045 1.028781152 0.996061078 1.018953246 1.087936315 1.03729036 189340896 aclb Chlorobium limicola DSM 245 Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium limicola; 0.917016932 0.895756198 0.97382962 0.848677462 0.968687416 0.871780499 0.977946052 0.86985253 0.840173758 0.922578512 0.826985668 0.900368739 0.919020682 0.887931731 0.900223179 0.938262289 0.933819632 0.969941675 374986445 amyA Streptomyces bingchenggensis BCW-1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces bingchenggensis; 1.058168848 1.077802217 1.070720095 1.081462079 1.068648044 1.096942798 1.051897303 1.069991435 1.039485705 1.036262513 1.060856411 1.045376071 1.073542304 1.036270659 1.070866153 1.041068441 1.114567856 1.053886802 371486316 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.890680585 0.902976863 0.910150224 0.95259287 0.901760818 0.849239634 0.910564235 0.904771891 0.900939972 0.842393114 0.86652995 0.847542405 0.801105879 0.855595598 0.937040359 0.928574123 206563969 xylg Burkholderia cenocepacia J2315 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cenocepacia; 1.036085206 0.982782904 0.99907621 1.062862349 1.038532483 1.022843455 0.994347796 0.996269644 0.999119275 0.979149011 1.016599204 1.0132412 1.032110246 0.960953089 0.997249031 0.978379196 1.030491417 1.027639896 116226010 ara Solibacter usitatus Ellin6076 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 1.009432963 1.012999614 1.026709329 1.008002025 1.068619244 1.09949488 1.089259543 1.011602958 0.999048965 1.076225545 1.065056055 1.055567257 1.043935818 1.022646385 0.990808579 1.012153172 1.003511444 1.027558445 379003391 por_DiC4HB Pyrobaculum oguniense TE7 Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum oguniense; 0.912084649 0.895239945 0.82807586 0.914687855 0.866902238 0.862898108 0.844261682 0.818976621 0.86981705 0.842027661 0.82644217 0.891987938 0.859190643 0.813515212 0.828927045 0.869698467 0.903942677 0.912167754 380696320 amyA Bacteroides faecis MAJ27 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides faecis; 0.832649863 0.798898779 0.827783541 0.860268725 0.939576901 0.897272464 0.911960613 0.857084269 0.835796409 0.87837288 0.837941706 0.878560628 0.794767502 0.832195695 0.852760449 0.889009748 0.877766759 112462565 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.786768676 0.826145609 0.866423293 0.870595621 0.853303038 0.91277289 0.902915312 0.896118426 0.863568925 0.930300322 0.954159953 0.853053572 0.840483492 0.821710304 0.896948583 0.81186022 110817983 amyA Rhodococcus jostii RHA1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 0.831353512 0.871007779 0.827488951 0.800129301 0.866381961 0.804817966 0.815887552 0.821778501 0.835270958 0.786999866 0.828244801 0.829084113 383821565 amyA Mycobacterium phlei RIVM601174 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium phlei; 1.374011092 1.375899641 1.36730498 1.331465484 1.351373182 1.388041417 1.338319607 1.365153512 1.318434025 1.367389242 1.36077444 1.346092682 1.333901679 1.36251777 1.331591107 1.366506551 1.338968605 1.370152863 364578331 fthfs Cardiobacterium valvarum F0432 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Cardiobacteriales;family:Cardiobacteriaceae;genus:Cardiobacterium;species:Cardiobacterium valvarum; 1.026584996 0.932215991 0.951117297 0.945030949 0.94569527 0.96169916 0.90458681 0.92526785 0.947233822 0.944691696 0.926076006 1.000251696 0.887508013 0.923601853 0.912583754 0.911018969 0.953650983 0.983311619 313498012 chrr Pseudomonas putida BIRD-1 Metal Homeostasis Chromium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 1.133621077 1.093038477 1.103489516 1.061128001 1.087096777 1.167217022 1.101143173 1.089664781 1.099445914 1.110298228 1.09216629 1.06007075 1.091298463 1.147690158 1.147961816 1.110416178 1.1109581 1.13387487 359822391 cutinase Mycobacterium rhodesiae NBB3 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 0.932060136 0.945523754 0.902927437 0.958386072 0.864382313 0.940767294 0.887930909 0.947485243 0.938518827 0.949499654 0.899614358 0.902688791 0.880723876 0.925959364 0.848702393 0.917171836 0.937491021 0.970754802 353189485 cutinase Mycobacterium rhodesiae JS60 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 0.867192922 0.856339727 0.853395225 0.853918309 0.817986349 0.844976294 0.851180592 0.81157599 0.823716931 0.861106388 373854422 ara Opitutaceae bacterium TAV5 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 0.822282445 0.836270809 0.802919719 0.856647307 209518151 bphd Burkholderia sp. H160 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 1.135076605 1.142456857 1.093288885 1.178555075 1.093120013 1.146038978 1.097439052 1.139554486 1.116547846 1.087643032 1.111285309 1.136943684 1.080604864 1.081004771 1.073239677 1.099794651 1.1468645 1.086252745 357076319 xyla Frankia sp. CN3 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 1.194500193 1.209745195 1.193657543 1.181751356 1.203229519 1.213943064 1.169835819 1.164786805 1.179507021 1.198124254 1.182725438 1.179039045 1.182884636 1.160306322 1.174065817 1.169465863 1.191319758 1.197880774 164455682 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 0.963541463 1.003418887 0.963560779 0.989760778 0.975241378 1.010265309 0.912354549 1.039830051 0.922286859 0.969190159 0.907860737 0.961443599 0.946771314 0.94358515 0.899626664 0.928481029 0.972698306 1.004140772 258653258 amyA Nakamurella multipartita DSM 44233 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nakamurellaceae;genus:Nakamurella;species:Nakamurella multipartita; 1.073200751 1.053037436 1.047317462 1.070723888 1.01823009 1.05822697 1.031464817 1.024955597 1.038469342 1.00907301 1.010546189 1.026957042 1.004545867 1.017334658 0.982424433 1.050192446 1.074512859 1.027250389 224537171 xylanase Bacteroides cellulosilyticus DSM 14838 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides cellulosilyticus; 1.049756351 1.026052028 1.031966662 1.052792202 1.009768352 1.081616495 1.053231308 1.059523785 1.052188248 1.049574975 1.018672394 1.055952238 0.998636516 1.019975884 1.00936839 1.010297677 1.065465874 1.049570444 74317158 TIM Thiobacillus denitrificans ATCC 25259 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus;species:Thiobacillus denitrificans; 0.888410822 0.834638908 0.890649718 0.914667303 0.805988897 0.830042766 0.800680255 0.861873657 0.89794557 0.909924719 0.829365611 0.93536694 0.850367045 0.821858786 0.811691913 0.899046035 0.84710426 238844363 tannase_Cdeg Microsporum canis CBS 113480 Carbon Cycling Carbon degradation Tannins superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Arthrodermataceae;genus:Arthroderma;species:Arthroderma otae; 0.775531021 0.827412523 0.789329723 0.812423945 0.836067723 0.832491157 0.761469193 0.850781099 34017136 dsra uncultured bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.168165084 1.129626507 1.150361364 1.167832452 1.153374696 1.144748355 1.146577444 1.137678107 1.161883975 1.117732476 1.130979862 1.177163308 1.096142803 1.113760913 1.079301353 1.084406663 1.176880134 1.119157428 302418284 phospholipase_A2_fungi Verticillium albo-atrum VaMs.102 Carbon Cycling Carbon degradation Phospholipids superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticilium;species:Verticillium albo-atrum; 1.025033727 1.065269995 1.009566935 1.025115676 0.997779779 0.978005431 0.988652424 0.989753719 1.005425905 1.023025411 0.990286085 1.019298564 0.958114536 0.981988714 0.972197313 0.979090931 1.008010334 1.017797835 403661583 mhpb Mycobacterium fortuitum subsp. fortuitum DSM 46621 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium fortuitum; 0.92227618 0.907329306 0.835954645 0.889876657 0.890143366 0.876920902 0.886888522 0.869323434 0.850919083 0.891122832 0.831539102 0.894617049 0.891183449 3449374 CsoS1_CcmK Halothiobacillus neapolitanus c2 Carbon Cycling Carbon fixation Bacterial Microcompartments 0.964642476 1.00111493 0.940721217 0.937958629 0.923728011 0.94967568 0.879217903 0.923487374 0.91143719 0.912839042 0.93387309 0.918681286 0.911704925 0.940767733 0.898271573 0.919365709 0.90150383 0.962872734 378803720 mult_ring_12DiOx Mycobacterium intracellulare MOTT-02 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium intracellulare; 0.768346433 0.795630918 0.81228135 0.794129604 0.800791448 27762476 xylc Pseudomonas putida Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.883919718 0.942743765 1.045152565 0.953234861 0.922670944 1.046579347 0.885376472 0.925792857 0.978620483 0.909903477 0.88837813 0.899491112 0.878122544 0.868530205 0.898897324 0.99367036 0.96545287 0.923717205 218988998 phenol_oxidase Russula ochroleuca Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Russulales;family:Russulaceae;genus:Russula; 1.188782479 1.185499183 1.16201501 1.228076471 1.08212616 1.212192397 1.12112173 1.11333937 1.172558403 1.172191431 1.150831708 1.181993329 1.170606005 1.15156583 1.106006571 1.148351866 1.205686513 1.15726639 332040658 poba Hylemonella gracilis ATCC 19624 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Hylemonella;species:Hylemonella gracilis; 0.882374086 0.838763691 0.87032028 0.920254341 0.890358643 0.88225451 0.879523316 0.876212233 0.900717685 0.864261329 0.869929218 0.873760952 0.861878254 0.827562296 0.81752193 0.880031161 0.898839902 0.869371401 25990800 dsra uncultured bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.869801889 0.865803683 0.922355827 0.860312258 0.968527674 0.900695036 0.888131362 0.868904372 0.894787274 0.891733163 0.899739179 0.875450551 0.93180014 0.891235063 0.909725433 0.873204447 0.875696137 0.953006626 304343016 acetylglucosaminidase Paenibacillus curdlanolyticus YK9 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus curdlanolyticus; 0.948621903 0.918050506 0.886294051 0.92308228 0.838188728 0.916610754 0.828920562 0.953807124 0.874785088 0.863231558 0.882967107 0.82507085 0.815043712 0.879948149 0.841663122 0.943581053 0.904998591 56479025 nosz Azoarcus sp. EbN1 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 0.853982206 0.841663362 0.91044933 0.867545465 0.835193991 0.845087023 0.881387466 87281083 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.132218995 1.124377583 1.092407558 1.091693463 1.088930641 1.134063596 1.071851955 1.101114108 1.093212337 1.072170804 1.087082369 1.093235079 1.058797008 1.070524537 1.069932879 1.085001973 1.095009793 1.115649798 288961539 cellobiase Azospirillum sp. B510 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum lipoferum; 1.004733336 0.967551882 0.830608289 0.927962802 0.960298428 1.031244177 0.866531467 0.924793664 0.872443106 0.929904839 0.799328453 0.935640208 0.907052888 1.043114544 0.98627054 0.979891895 1.004824025 0.969344879 380768869 mannanase Treponema saccharophilum DSM 2985 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema saccharophilum; 0.79379983 0.79482977 0.806743067 0.829205716 0.873119187 0.815421663 0.830890375 0.850299461 0.858160829 0.892438563 0.848764016 0.821452797 338211054 bphc Runella slithyformis DSM 19594 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Runella;species:Runella slithyformis; 0.958036485 0.910083484 0.906223444 0.942663619 0.949239296 0.936119592 0.946238106 0.93874802 0.954769798 0.986889368 0.962630755 0.951071723 0.921798701 0.910720782 0.891070729 0.891000421 0.991086949 0.988140028 378785702 mult_ring_12DiOx Blastococcus saxobsidens DD2 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Geodermatophilaceae;genus:Blastococcus;species:Blastococcus saxobsidens; 0.968291154 0.91681172 0.905981672 0.955361804 0.928874003 0.936794217 0.944672512 0.932099776 0.930916835 0.920396834 0.936921782 0.944005655 0.867198746 0.866416939 0.851352001 0.890593527 0.904123655 0.848680556 385182658 xylj Burkholderia sp. Ch1-1 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 0.849955645 0.798029907 0.833957508 0.879522489 0.860647582 0.808381053 0.829146485 0.83529655 0.849950331 0.816674308 0.844913208 0.868732737 295690922 mannanase Caulobacter segnis ATCC 21756 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter segnis; 0.817970337 0.88370746 0.807621788 0.818657661 0.91122798 0.869764155 0.849189929 0.845000664 0.882272761 340552219 ppx Collimonas fungivorans Ter331 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Collimonas;species:Collimonas fungivorans; 0.91220544 0.835119831 0.861537844 0.894622968 0.909879763 0.888741912 0.858344792 0.89580494 0.843903942 0.845668542 0.851736234 0.841018788 0.835293354 0.847267915 0.81877521 0.923200786 0.907913654 239611813 phospholipase_C_fungi Ajellomyces dermatitidis ER-3 Carbon Cycling Carbon degradation Phospholipids superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces dermatitidis; 1.033075093 0.964587496 0.941988176 1.002404485 0.963974375 0.958852066 0.962608933 0.98083049 0.989094244 0.964082869 0.98186492 0.988477876 0.941968499 0.921423141 0.903180665 0.988451621 1.01775416 0.99737415 122726265 nifh uncultured microorganism Nitrogen Nitrogen fixation NA 1.012319365 1.0296963 0.986441683 1.054145468 1.04234545 0.992770244 1.040348831 0.987027038 0.999766655 1.029794485 1.080832423 1.06536525 1.020184255 1.047452116 0.979949428 1.008218785 0.960400625 0.997406887 89347607 tktA Rhodoferax ferrireducens T118 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Albidiferax;species:Albidiferax ferrireducens; 0.798174042 0.854388507 0.845747697 0.838913431 0.84773407 0.853006007 0.929802959 0.842532551 0.867101468 0.844611698 0.811760733 0.81785021 0.858194084 0.813616645 398868987 poba Pseudomonas sp. GM78 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 1.019667549 0.994484901 1.000292677 0.992736373 0.994080922 0.979814174 0.999808792 0.999424364 1.043084094 1.008462989 1.003033068 1.009241497 0.970552819 0.9151014 0.922143952 0.950190423 1.027202857 1.015351407 255284099 ppk Bryantella formatexigens DSM 14469 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;species:Marvinbryantia formatexigens; 0.903946922 0.879313541 0.818702641 0.896952613 0.832766038 0.873762348 0.849635262 0.888266178 0.86256385 0.876607484 0.915803151 0.872836356 0.851935708 0.833810179 0.848476137 0.881077403 0.877387329 29466028 norb uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.874066698 0.828712492 87281388 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.007257717 1.025681375 0.983854217 0.97605646 0.936037511 0.924003783 0.885161197 0.968467318 0.948546528 0.943099141 0.910768375 0.958704397 0.922078459 0.911418106 0.933234035 0.919157355 0.915541355 0.937305943 158108308 amyA Frankia sp. EAN1pec Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 0.829872085 0.837220231 0.835985444 0.788021923 0.855862416 0.862813243 0.822922342 0.791289593 0.879276038 0.872119908 0.79408057 0.8421755 0.833036872 0.850926868 0.795533661 0.792970013 0.886295835 88865397 phn Jannaschia sp. CCS1 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Jannaschia; 1.082248702 1.052306971 1.026988386 1.034403306 0.952818332 1.04652895 0.968848097 1.019643633 1.053622872 1.023113139 0.999374502 1.005399671 0.932750369 0.967972711 0.883863867 0.970376086 1.113068031 1.079832897 99030569 ppk uncultured bacterium Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria; 1.284474622 1.212284462 1.207848452 1.250371932 1.210928783 1.17834182 1.228207505 1.203780961 1.232397036 1.18186527 1.180336333 1.236718143 1.182766736 1.137523496 1.169657888 1.168360229 1.262844208 1.157124289 159182524 mer alpha proteobacterium BAL199 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 0.831666727 0.857878695 0.816934775 0.820318994 0.844904407 0.839308473 0.825293845 0.886207535 0.803508607 0.819112992 0.804489411 0.816279506 0.845785288 0.810866538 0.897357278 77378581 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.892565132 0.80505283 0.86737467 0.829534838 0.808087349 0.855981631 0.834901749 0.786206143 0.840187424 0.812376691 0.824350655 39976535 ara Magnaporthe grisea 70-15 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 0.868736245 0.8279463 0.955455251 0.825572382 0.842713548 0.920753182 0.833816791 0.874935658 0.898298636 0.965211439 0.877790881 0.84281053 0.867659797 0.941455445 297565602 amyA Meiothermus silvanus DSM 9946 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Meiothermus;species:Meiothermus silvanus; 0.868068221 0.908173232 0.87478923 0.898482329 0.87150348 0.890706912 0.862752077 0.888444283 0.852289325 0.883800103 0.87049707 0.862964912 0.863537911 0.855896342 0.875839554 0.921004713 222149814 xyla Agrobacterium vitis S4 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium vitis; 1.072622479 1.041256303 1.04507455 1.046341457 1.049183333 1.048210321 1.013633741 1.037649235 1.05432494 0.992829547 1.060857901 1.045172059 1.016263937 0.959042143 0.972583283 0.99279176 1.069884529 1.031585997 167034582 nagg Pseudomonas putida GB-1 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 1.149454856 1.152767516 1.136170361 1.117283217 1.10743618 1.152239875 1.110897908 1.113299286 1.110255412 1.145419385 1.087509009 1.107624398 1.068862264 1.080371608 1.02722585 1.085077297 1.126919186 1.14791656 325519915 vana Burkholderia sp. TJI49 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 0.984072915 1.003701814 1.005203216 0.935984135 0.991521036 0.967167124 0.970117371 0.986570327 0.978720039 0.996585151 1.005661406 0.976791548 0.934451032 0.94173222 0.916572676 0.94306079 0.995595936 1.033925158 34335350 catechol Pseudomonas sp. ND6 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 1.171162119 1.168091689 1.150598514 1.185738483 1.160364055 1.182551731 1.16362553 1.147645187 1.159655596 1.14406898 1.173840095 1.170433978 1.176432615 1.14737075 1.148894124 1.16416914 1.175613359 1.158023339 310867705 rgl Bacillus atrophaeus 1942 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus atrophaeus; 1.124598996 1.058267285 1.074774777 1.09736818 1.07616239 1.144030697 1.070152245 1.088196651 1.147922616 1.10101065 1.100038702 1.112973472 1.089960263 1.22514644 1.114070505 1.069170971 1.071774606 1.084052274 334131546 PRK Methyloversatilis universalis FAM5 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Methyloversatilis;species:Methyloversatilis universalis; 0.850305485 0.914699323 0.875060469 0.87761536 0.861258074 0.894812477 0.853898464 0.870834592 0.929038033 0.819688493 0.811869714 0.817954696 0.783369661 0.82989816 0.845919022 0.842653926 0.85789454 118169063 cutinase Mycobacterium smegmatis str. MC2 155 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 0.845947794 0.954939937 0.880788313 0.9089127 0.890049895 0.915248477 0.840327494 0.85007329 0.866588188 0.935055224 0.872674801 0.89521363 0.869686389 0.896233612 0.854506255 0.838557693 0.900313198 0.963936961 341926068 chitinase Chitiniphilus shinanonensis Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Chitiniphilus; 1.158420793 1.073820136 1.150693015 1.126960228 1.080798707 1.123586816 1.066066112 1.130338505 1.139645584 1.096798806 1.074385897 1.114385477 1.049255768 1.06946126 1.159162559 1.113337672 1.190205669 1.100619923 149361059 mer Marinobacter algicola DG893 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter algicola; 1.280268298 1.262373132 1.258827302 1.261954774 1.257092228 1.284901128 1.264851944 1.237937235 1.26174595 1.27943217 1.26004557 1.268587935 1.214893034 1.217088133 1.1877533 1.234552927 1.245151413 1.240893277 267984668 amyA Edwardsiella tarda EIB202 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Edwardsiella;species:Edwardsiella tarda; 1.173184771 1.195400582 1.16554805 1.181082013 1.185068998 1.192611633 1.177343925 1.178695153 1.365347875 1.152856395 1.165724396 1.180543832 1.184456821 1.091682404 1.109254803 1.144231628 1.214657165 1.16956109 76577390 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.835491231 0.857800824 0.83178593 0.807954644 0.846686012 0.840010312 0.794196406 0.850575626 0.821422182 58002364 FBPase Gluconobacter oxydans 621H Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconobacter;species:Gluconobacter oxydans; 0.933879776 0.876169773 0.895666738 0.912010963 0.902435763 0.907753562 0.846696466 0.877954275 0.909754861 0.863059045 0.876610816 0.853588584 0.895182215 0.842256028 0.839987014 0.847190829 0.958953689 0.917230642 325483131 amyA Prevotella denticola CRIS 18C-A Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella denticola; 0.796118086 0.83373918 0.936599483 0.806843394 0.812607503 0.900140787 0.822847636 0.860348823 0.852381071 0.901062213 0.891507676 374667359 dsrB Burkholderiales bacterium JOSHI_001 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales; 1.158594046 1.104999817 1.123484461 1.133592047 1.121570666 1.172495582 1.146136552 1.138744838 1.168266692 1.114167151 1.116227855 1.105557391 1.103706974 1.107178922 1.042714391 1.089900389 1.153795003 1.140547237 225082033 bphF1 marine gamma proteobacterium HTCC2148 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 0.767574875 0.811923141 0.848138405 0.850585062 0.847859925 0.779774775 90022649 pectinase (pectate_lyase) Saccharophagus degradans 2-40 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Saccharophagus;species:Saccharophagus degradans; 0.967957528 0.9765783 0.972954892 0.97751627 0.977008729 1.019277508 0.925760344 0.887795254 0.947726055 0.945116774 0.911343661 0.943426509 0.938030108 0.915731513 0.951338172 0.896055392 0.967180563 0.982099207 71846167 bphF1 Dechloromonas aromatica RCB Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Dechloromonas;species:Dechloromonas aromatica; 0.83450169 0.817371039 0.854311286 0.79880732 0.820225177 0.835768095 0.837301861 0.815251454 0.813124919 0.803363355 0.851400875 0.836146203 57234837 rd Dehalococcoides ethenogenes 195 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides;species:Dehalococcoides ethenogenes; 1.409197738 1.364158825 1.397241667 1.412374557 1.402858544 1.408458221 1.407662603 1.428153417 1.393529257 1.404345898 1.392757503 1.415910659 1.369164652 1.374107829 1.376376766 1.381350888 1.378694907 1.358246351 110835044 mer Alcanivorax borkumensis SK2 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax;species:Alcanivorax borkumensis; 0.963164638 0.959567861 0.967550943 0.952928541 0.877775271 0.898828742 0.863875116 0.947121512 0.947253279 0.89904729 0.925260222 0.937800248 0.894047619 0.856830341 0.880993527 0.870550019 0.973864853 0.924791084 93357655 catechol Ralstonia metallidurans CH34 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 1.095842241 1.11874548 1.07226164 1.076799999 1.097619931 1.146447967 1.03277158 1.040445744 1.010566244 1.107352285 1.071914555 1.051695006 1.106564628 1.146010895 1.068217881 1.066413698 1.101995594 1.103859835 83955301 pcag Sulfitobacter sp. NAS-14.1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 0.814820143 0.856457495 0.811212538 0.790155873 0.81778886 0.835242382 0.785271865 0.836338118 0.860050209 0.832558909 0.81322651 408749723 thl Rhizobium mesoamericanum STM3625 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium mesoamericanum; 1.196018031 1.176695787 1.15959114 1.171471567 1.146142168 1.18676933 1.148957684 1.167500227 1.162773611 1.189285362 1.16156313 1.218666396 1.142120265 1.158412751 1.144524313 1.195621451 1.184845026 1.170829101 146192101 tfdb Bradyrhizobium sp. ORS278 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 1.00820235 0.976520163 1.001031553 0.944617422 0.983029998 0.974404696 0.975418532 0.961399129 0.962075201 0.991018525 1.002791623 1.015097318 0.928500074 0.912602678 0.919748051 0.930616487 1.003682735 1.024713968 149926107 phn Limnobacter sp. MED105 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Limnobacter; 0.907961005 0.94450755 0.838896938 0.936519793 0.912111758 0.884102277 0.884932468 0.881283577 0.900828968 0.886483178 0.847321342 0.902267518 0.866720452 0.829051877 0.855038851 0.854641114 0.90636717 0.9231033 307728600 arsc Burkholderia sp. CCGE1003 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 1.15638516 1.134206895 1.183473405 1.132995206 1.131331427 1.160748359 1.130553717 1.133253206 1.116730435 1.133207321 1.111122229 1.149235328 1.102026458 1.1040158 1.074839351 1.107512578 1.141145504 1.156271908 338824530 cysJ Agrobacterium tumefaciens F2 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 1.135713998 1.132361841 1.119706107 1.105326572 1.106217493 1.156119418 1.088319614 1.117125795 1.102928964 1.082933064 1.087940624 1.11505423 1.067860976 1.064331912 1.036687624 1.082748868 1.099232214 1.120419318 22299139 CsoS1_CcmK Thermosynechococcus elongatus BP-1 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Thermosynechococcus;species:Thermosynechococcus elongatus; 1.066125163 1.061304388 1.044512702 1.027947558 1.051168614 1.051509966 1.046367249 1.01744876 1.026833022 1.031671167 1.000030015 1.02413822 1.00193399 0.97157759 1.021574385 0.992590117 1.059878434 1.075820622 188533196 ppx Erwinia tasmaniensis Et1/99 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia tasmaniensis; 0.875284797 0.918807359 1.017015057 0.86343905 0.915718913 0.930527458 0.876333345 0.827479253 0.939566662 0.872336673 0.883813417 0.853791638 0.850530753 0.851022444 0.831161441 0.875209448 0.927318813 0.934956718 55378686 amyA Haloarcula marismortui ATCC 43049 Carbon Cycling Carbon degradation Starch superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloarcula;species:Haloarcula marismortui; 0.799652863 0.784694905 0.804704719 0.831462711 90104691 CsoS1_CcmK Rhodopseudomonas palustris BisB18 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 1.26449145 1.202756195 1.232405664 1.225227978 1.189181025 1.246314711 1.203322173 1.205672735 1.226652551 1.21397429 1.21948201 1.223959863 1.207952455 1.214750854 1.205631761 1.221660494 1.240482679 1.212101556 55379419 tehb Haloarcula marismortui ATCC 43049 Metal Homeostasis Tellurium Detoxification superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloarcula;species:Haloarcula marismortui; 0.967938086 0.977369244 0.970365083 0.997050135 0.961799552 0.936789042 0.910220952 0.920895936 0.960102583 0.928689135 0.941042919 0.935587616 0.935350078 0.876006855 0.914207982 0.888672319 0.977856899 0.955477829 367476733 nhh Bradyrhizobium sp. ORS 285 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 1.557629139 1.502417308 1.502172644 1.526022624 1.492213376 1.504369997 1.468499932 1.503349688 1.501282995 1.487200067 1.49339758 1.518700228 1.461614932 1.446196393 1.46289236 1.489331543 1.510712327 1.47299993 73762754 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.905482146 0.834778538 0.910012315 0.908742052 0.955696391 0.930522174 0.853404718 0.886555964 0.911059844 0.896353838 0.879693447 0.858238189 0.89183568 0.876824882 0.848009301 0.89237298 0.945415832 118442823 acetylglucosaminidase Streptomyces thermoviolaceus Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 0.827762822 0.826217447 0.844105099 0.831670685 0.813294384 0.797654003 0.793028494 0.8163879 0.798011399 0.891868772 301386268 phytase Pseudomonas syringae pv. tomato Max13 Phosphorus Phytic acid hydrolysis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 1.355100497 1.321353463 1.298944246 1.321229182 1.291303347 1.326579954 1.303003222 1.302859132 1.298114347 1.291973482 1.287261659 1.308765263 1.260172095 1.263718704 1.228566989 1.275148276 1.299340307 1.314985092 359404117 amyA Prevotella stercorea DSM 18206 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella stercorea; 1.039247099 1.026392747 1.034740164 1.066922688 1.054717208 0.975330737 1.053907489 1.043274529 1.017592304 1.011868776 0.994301068 1.038908114 1.023593982 0.921668541 0.90030565 0.960835083 0.990812823 0.999010612 389775171 chitinase Rhodanobacter spathiphylli B39 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Rhodanobacter;species:Rhodanobacter spathiphylli; 1.235236123 1.233541607 1.204997189 1.218733049 1.16849825 1.221362458 1.159387652 1.192040558 1.201822022 1.168010088 1.178465355 1.208026487 1.168459359 1.160748227 1.186404482 1.158124149 1.216197353 1.214007467 379067075 nitro Pseudomonas stutzeri ATCC 14405 = CCUG 16156 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 0.926606099 0.906690918 0.94024493 0.934855758 0.905042462 0.942701148 0.916631856 0.89682682 0.912843897 0.921040541 0.887720523 0.888674158 0.892536781 0.835723722 0.863687547 0.933857087 0.93544107 111055384 cutinase Phaeosphaeria nodorum SN15 Carbon Cycling Carbon degradation Cutin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Phaeosphaeriaceae;genus:Phaeosphaeria;species:Phaeosphaeria nodorum; 1.00996671 1.011659964 1.053525267 1.029061956 0.996763544 1.157635371 1.038550398 1.03251536 1.110013983 1.029962711 0.94947809 1.081796188 1.053870892 1.030274889 0.969069189 1.01370044 1.042433845 0.989834992 160917424 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.121100098 1.073976578 1.104311632 1.102941898 1.084454691 1.120776946 1.116828207 1.122305672 1.109354077 1.084816766 1.110561034 1.114965155 1.096594533 1.059060639 1.05951561 1.091653564 1.12256164 1.090317051 113867644 nagg Ralstonia eutropha H16 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 0.905701029 0.913191324 0.839378484 0.925968403 0.820120669 0.912179409 0.824481833 0.851804328 0.893919423 0.919424695 0.831311108 0.899353186 0.887228116 0.939796596 0.93338001 117648274 endochitinase Acidothermus cellulolyticus 11B Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Acidothermaceae;genus:Acidothermus;species:Acidothermus cellulolyticus; 0.891188763 0.891186627 0.905048945 0.933294411 0.913233236 0.878270206 0.931485979 0.918696197 0.941497161 0.890018951 0.917285053 0.900935461 0.815677615 0.861578887 0.871981866 0.864466072 0.941588465 0.938770857 225194110 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.827903588 0.830305629 0.871691218 0.784602532 0.852397557 0.97936589 0.86698889 0.819914167 0.81751101 0.814593364 0.875825166 0.904188171 0.829973374 0.85665192 0.961987193 0.937360675 0.999551888 0.94777795 183178660 cutinase Mycobacterium marinum M Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium marinum; 1.149143409 1.143154706 1.124348635 1.112805914 1.124998216 1.161562864 1.123075518 1.181539244 1.128185739 1.140344306 1.151672938 1.112459642 1.106052148 1.115843033 1.069490356 1.087224246 1.117747627 1.166512833 134100912 one_ring_23diox Saccharopolyspora erythraea NRRL 2338 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 0.780834699 0.845795414 0.816962099 0.813606137 0.877628172 0.835788618 0.800419453 0.889435756 334142617 bphF1 Novosphingobium sp. PP1Y Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 0.778917015 0.813003071 0.777007992 0.826016466 270333258 pme Prevotella bergensis DSM 17361 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella bergensis; 1.115676756 1.174831889 1.099092956 1.096794672 1.129344273 1.12970772 1.118408943 1.134941603 1.115128816 1.13225311 1.131011187 1.131112809 1.106881569 1.117784963 1.131532376 1.130996085 1.097084296 1.116306401 114225644 PRI Alkalilimnicola ehrlichii MLHE-1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Alkalilimnicola;species:Alkalilimnicola ehrlichii; 0.776453048 0.81353669 0.833316904 0.81149708 0.807520542 0.8237535 223964434 cellobiase Holdemania filiformis DSM 12042 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Firmicutes;class:Erysipelotrichia;order:Erysipelotrichales;family:Erysipelotrichaceae;genus:Holdemania;species:Holdemania filiformis; 0.821013433 0.787133234 0.771583254 0.805526349 290781797 nifh Megasphaera genomosp. type_1 str. 28L Nitrogen Nitrogen fixation NA superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Megasphaera;species:Megasphaera genomosp. type_1; 0.995827811 0.954104677 1.017487482 1.053735503 1.041026704 0.983569399 1.042176339 1.025363006 1.026926469 1.013924882 1.026428249 1.044666271 1.012549621 0.958856451 0.938898934 0.976918712 0.994890703 0.94605427 354573215 urec Mesorhizobium australicum WSM2073 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium australicum; 1.184411653 1.158363719 1.167627754 1.17522344 1.160975781 1.197437668 1.144665051 1.172983241 1.147709818 1.14674408 1.144081356 1.164244856 1.152777667 1.16302932 1.166154739 1.17728487 1.178674552 1.150491284 357597560 poba Novosphingobium pentaromativorans US6-1 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium pentaromativorans; 1.100168202 1.054471448 1.05940406 1.136418147 1.062018656 1.107646678 1.079284454 1.092966539 1.101309158 1.074387897 1.083950098 1.103208897 1.047751437 1.055225326 1.029045149 1.064718716 1.153955718 1.062952445 284039635 xylanase Spirosoma linguale DSM 74 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Spirosoma;species:Spirosoma linguale; 0.941789378 0.94591556 0.969228026 0.984317005 1.004726087 1.012918748 0.970142056 1.021186746 0.974552695 0.988945158 1.035648534 0.984594466 0.963537559 0.955940534 0.850636181 0.878787108 0.955072748 0.976891213 146408830 terc Bradyrhizobium sp. BTAi1 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 1.419554021 1.393326383 1.378256695 1.373019747 1.367777079 1.408175311 1.353440551 1.361729435 1.358369488 1.37797157 1.384536803 1.391989386 1.343002197 1.346561926 1.320033155 1.368718685 1.374912906 1.372003915 166406453 nirk Azospirillum brasilense Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum; 0.816325351 0.842139189 0.833072804 0.813753547 0.796617176 0.7655614 0.826837247 0.827305453 0.775241463 0.831906017 30909240 arsc Agrobacterium sp. 5A Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium; 0.937574557 0.938981155 0.976763423 0.941223625 0.931497623 0.914415263 0.957838321 0.993706634 0.978610493 0.942257591 0.85118789 0.937193519 0.8432771 0.875454097 0.816783594 0.939267032 0.97411412 0.947739142 383331115 ppx Mycobacterium phlei RIVM601174 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium phlei; 1.191404511 1.137121716 1.111502566 1.172023455 1.131230571 1.161053071 1.098214743 1.14486668 1.143549396 1.103897114 1.098445189 1.135525123 1.093616287 1.10614351 1.084105789 1.086513991 1.170210686 1.126205456 256688145 amyA Kytococcus sedentarius DSM 20547 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dermacoccaceae;genus:Kytococcus;species:Kytococcus sedentarius; 1.034496114 1.044638307 1.009317598 1.037462372 0.973131027 1.079669994 0.994042728 0.98814831 1.024873813 1.020257777 0.995513909 0.992049493 0.982724076 1.018006361 0.963910993 0.996823395 1.050537 1.045052683 302416485 cutinase Verticillium albo-atrum VaMs.102 Carbon Cycling Carbon degradation Cutin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticilium;species:Verticillium albo-atrum; 1.054975701 0.994798137 1.02467728 1.038049176 1.043015329 1.050834399 1.070087503 1.061913254 1.050056812 1.005675028 1.158461401 1.014833099 1.038986627 0.972128371 0.933696669 0.952635974 1.057871632 0.999126489 224607311 amyA Natrialba magadii ATCC 43099 Carbon Cycling Carbon degradation Starch superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Natrialba;species:Natrialba magadii; 1.225411131 1.220386942 1.175240446 1.194515056 1.136912421 1.17172579 1.167688257 1.194756921 1.196158008 1.18937552 1.128025501 1.172261596 1.125613338 1.172826486 1.166313776 1.134875672 1.194417879 1.211376764 260613801 acetylglucosaminidase Vibrio furnissii CIP 102972 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio furnissii; 0.940647281 0.910555218 0.82250377 0.870226749 0.846222657 0.889826268 0.903616881 0.894961197 0.865418245 0.941173096 0.846729504 0.871430583 0.880819416 0.899746036 0.818750471 0.907623518 0.938904059 344338259 PRK Thiocapsa marina 5811 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiocapsa;species:Thiocapsa marina; 0.918236889 0.888528362 0.921221123 0.94515808 0.932990825 0.90177526 0.930157531 0.886154534 0.926142251 0.917947901 0.909670592 0.890320197 0.866586592 0.865757353 0.875827614 0.849783997 0.916920414 0.94924091 330427379 cysI Pusillimonas sp. T7-7 Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Pusillimonas; 0.785690821 0.824558465 0.825926717 0.819606847 0.794985045 0.823137539 0.848210228 116067560 ccmL Synechococcus sp. RS9916 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 1.43701405 1.398768664 1.382728155 1.384060623 1.387222011 1.438962877 1.369932162 1.368636861 1.379482795 1.363112932 1.375452965 1.366368636 1.362339886 1.363904464 1.3455407 1.363898176 1.412602396 1.400549646 327479479 gdh Pseudomonas stutzeri DSM 4166 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 0.942945283 0.952554874 0.95052475 0.988935156 0.931873102 0.936213434 0.935746153 0.946181959 0.938838673 0.88367606 0.935157722 0.952294856 0.860319214 0.885061735 0.826344935 0.846901 0.945643783 0.984284611 115371531 phenol_oxidase Coprinopsis cinerea okayama7#130 Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 0.806464322 0.842956398 0.796976809 0.85854014 0.822866184 0.848814025 0.828332527 0.81559613 0.856148727 68164680 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.941416206 0.883302867 0.921518858 0.995466906 0.978451051 0.953366731 0.961196808 0.949655877 0.955259523 0.939334169 0.933162114 0.98513931 0.928142504 0.940500483 0.955400962 0.970432619 0.951832437 0.901540578 167645877 limeh Caulobacter sp. K31 Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 1.055592972 1.025369592 1.041798115 1.063155646 1.034764208 1.047428813 1.021112685 1.046075848 1.02215199 1.000139201 1.006716882 1.007896833 0.98995326 0.961172537 0.975939625 0.984047269 1.044227095 1.014355487 60494003 amyA Bacteroides fragilis NCTC 9343 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides fragilis; 0.902074049 0.901449386 0.93099257 0.870717978 0.885663676 0.915858249 0.880210115 0.85694403 0.837523655 0.894104007 0.84759996 0.901423787 0.898865191 0.979496796 0.825802824 0.87768698 0.819131387 0.881739115 118424457 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.210807526 1.212018413 1.177607905 1.165228987 1.173918851 1.19233753 1.137816676 1.142546679 1.154590053 1.170648092 1.167749624 1.180858285 1.162791865 1.181309387 1.12391043 1.162962056 1.182371316 1.191235443 379988587 dsrB uncultured bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.04724224 1.087633889 1.02174955 1.060099004 1.004974746 1.069845547 1.012204113 1.052841866 1.057304668 1.055044162 1.031040466 1.034112464 1.027314059 1.024017738 0.999576706 1.039785588 1.088496064 1.089211816 288869027 amyA Clostridium hathewayi DSM 13479 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hathewayi; 0.784339321 0.826755124 0.836041898 0.821038412 0.823740633 0.778791816 357394450 mdlc Kitasatospora setae KM-6054 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Kitasatospora;species:Kitasatospora setae; 1.146388033 1.148105179 1.108437519 1.148722801 1.125057894 1.145911986 1.117678347 1.13664156 1.111467026 1.120742681 1.119134911 1.117398739 1.114819013 1.106424744 1.080619352 1.11310067 1.154890346 1.142547939 343765410 arsc Gordonia alkanivorans NBRC 16433 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia alkanivorans; 0.886580112 0.855434688 0.822534068 0.886839306 0.88448633 0.889381651 0.870730896 0.863917306 0.905141613 0.89567733 0.836682745 0.916339749 0.863964887 0.848318189 0.81020795 0.891994647 0.889302538 291202704 exaa(moxf) Methylobacterium sp. MAFF 211642 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 0.763956689 0.842793747 0.871527064 0.832068459 0.803799615 0.819821397 0.809468032 0.806970144 334106510 rgl Isoptericola variabilis 225 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Promicromonosporaceae;genus:Isoptericola;species:Isoptericola variabilis; 1.116532854 1.064298403 1.04845873 1.07333457 1.064121002 1.07023157 1.054171797 1.049789657 1.050875866 1.039918436 1.024450962 1.071917902 1.047308726 1.02195758 1.046440547 1.063464862 1.138175128 1.049960658 332180438 amyA Treponema brennaborense DSM 12168 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema brennaborense; 0.941058146 0.9574639 0.892432033 0.972337576 0.961227533 0.972576259 0.953259801 0.913143191 0.963122382 0.955810101 0.981060628 0.962546529 0.911078593 0.892040044 0.871708643 0.894778696 0.922013377 0.965355942 344199183 PRI Acidithiobacillus ferrivorans SS3 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus ferrivorans; 1.304612569 1.306384958 1.284490118 1.278653236 1.282502712 1.283793788 1.269796075 1.256341856 1.260982997 1.265572902 1.289535073 1.287045492 1.278314768 1.262207373 1.268106332 1.263020169 1.293193467 1.265264046 118435649 soxY Stappia aggregata IAM 12614 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 1.01715846 1.029273283 0.920604098 0.997589599 0.987468402 1.050445814 0.961507555 1.000262043 1.002763491 0.991333396 0.973283912 0.994730215 0.970111317 0.966410165 0.977190195 0.969177328 1.032876501 1.049020421 403725366 badh Gordonia rhizosphera NBRC 16068 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia rhizosphera; 1.225633537 1.185849812 1.186348653 1.208212005 1.200665948 1.241576004 1.184454871 1.168207371 1.193407611 1.221057671 1.214797135 1.210048339 1.165038246 1.171789667 1.141752007 1.190588209 1.202814517 1.19777867 2627152 catechol_b Acinetobacter sp. YAA Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 0.91981619 0.909879846 0.967753332 0.927749069 0.963602956 0.973844311 0.991607397 0.953798249 0.947319728 0.991321074 0.97969887 0.920919585 1.004511632 0.933078341 0.936354541 0.893051014 0.946168895 315123197 chitinase Pseudoalteromonas sp. SM9913 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas; 1.053385567 1.015598523 1.060101444 1.064778043 1.048038179 1.031902543 1.048637773 1.022021869 1.133200992 1.046480022 1.064297879 1.055618377 1.024027504 1.033053418 1.024652254 1.022493215 1.008565902 1.080047757 119481985 Sir Neosartorya fischeri NRRL 181 Sulfur sulfite reduction NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 0.842362966 0.842679354 0.847537258 0.80059501 0.797647958 0.825968872 0.812457885 0.802657624 0.828885554 206572688 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.928584162 0.909199829 0.992496887 0.902905542 0.912885607 1.009014351 0.873762291 0.975577254 0.950392095 0.978249885 0.833019807 0.912272049 0.938307264 0.970255694 0.958262978 0.963395704 1.049020415 0.98349386 189198678 cellobiase Pyrenophora tritici-repentis Pt-1C-BFP Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 1.189055106 1.145731888 1.073449114 1.128558006 1.057163976 1.14243913 1.080373867 1.1109206 1.125009851 1.129256552 1.078712972 1.09704372 1.041555642 1.097084542 1.02259863 1.085585292 1.142540506 1.154567683 385258300 nifh uncultured microorganism Nitrogen Nitrogen fixation NA 0.966903846 1.017689018 1.005508641 1.002910528 1.011358314 1.001863424 0.939652633 0.992969056 0.984029363 0.980568954 0.934402497 0.974952391 0.997817962 0.94431946 0.946402432 0.980912428 0.988377695 0.982675229 365899348 badh Bradyrhizobium sp. STM 3843 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 1.412002322 1.343778066 1.345909527 1.376826846 1.342261496 1.342315152 1.345953057 1.357715194 1.368485536 1.335300339 1.319563178 1.359459949 1.310149153 1.296476578 1.319054356 1.320841822 1.356833185 1.340139733 237625001 catechol_b Thauera sp. MZ1T Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Thauera; 0.804285354 0.837249584 0.816700239 0.790463693 0.811345346 0.847387493 89091895 mer Oceanospirillum sp. MED92 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Neptuniibacter; 0.782815565 0.809665279 253573707 fosb Paenibacillus sp. oral taxon 786 str. D14 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus sp. oral taxon 786; 0.800826514 0.759144176 0.865437612 0.788781001 357384220 FBPase Pelagibacterium halotolerans B2 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Pelagibacterium;species:Pelagibacterium halotolerans; 1.070481387 1.026510054 1.046255717 1.007419857 1.042256431 1.026895443 1.033391538 0.969075443 1.020604906 1.002107564 1.067606319 0.974710226 0.969266626 0.948101225 0.915970502 0.934314205 1.042330925 1.035835556 93353557 phn Ralstonia metallidurans CH34 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 1.063270003 1.087037742 1.02171503 1.057216856 1.046731222 1.103198972 1.039196839 1.071444317 1.041794577 1.041503072 1.058965366 1.032324877 1.031554604 1.063476402 1.013161488 1.051191049 1.05243383 1.070908799 115423719 TIM Bordetella avium 197N Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella avium; 0.808255314 0.883600801 0.83475384 0.911146505 0.913697338 0.911918787 0.869280624 0.875799056 0.876164259 0.939833006 0.927897 0.926332399 0.880407648 0.860386579 0.870796244 0.93250847 0.88906314 0.903438302 30525486 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.786344193 0.785574255 381194567 SoxB Methylomicrobium album BG8 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylomicrobium;species:Methylomicrobium album; 0.968106974 0.91455142 0.945520377 0.893088398 0.893033545 0.891794156 0.896633119 1.012972013 0.916086334 0.88425923 1.01232579 0.940343029 0.925502175 0.900822824 0.890580765 0.90565648 0.922849285 0.906158224 351595036 xylanase Pelagibacterium halotolerans B2 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Pelagibacterium;species:Pelagibacterium halotolerans; 0.844889745 0.825645369 0.800286171 0.835697133 0.885819154 0.818362609 0.818088877 0.839084274 387889193 narg Escherichia blattae DSM 4481 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Shimwellia;species:Shimwellia blattae; 0.844246114 0.819036538 0.87678992 0.891719897 0.877169216 0.842717546 0.917443874 0.847029488 0.875026061 0.876494225 0.873842195 0.882841437 0.845449153 0.821441226 0.808306309 0.83902392 0.876162383 0.897584859 269096060 RgaE Sanguibacter keddieii DSM 10542 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Sanguibacteraceae;genus:Sanguibacter;species:Sanguibacter keddieii; 0.863214652 0.870853932 0.896822975 0.841097566 0.969448909 0.823601432 0.80780462 0.865837495 0.904477885 0.906705662 0.883382201 0.856694352 0.866225959 0.865338775 0.960239519 0.920947584 365850615 ccmL Yokenella regensburgei ATCC 43003 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yokenella;species:Yokenella regensburgei; 0.949803819 0.896754388 0.939542287 0.950491152 0.948884485 0.857424372 0.851349048 0.991475556 0.952945155 0.885112245 0.914101847 0.944955333 0.895286689 0.85661499 0.890024548 0.879950013 0.924245154 0.930630263 375309789 endoglucanase Paenibacillus sp. Aloe-11 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 0.900358562 0.881833651 0.902622208 0.967144668 0.925041271 0.933476669 0.916234342 0.928481379 0.935589879 0.929950396 0.910805256 0.966971132 0.924650558 0.923999522 0.897486158 0.938095416 0.872085667 0.909667159 266625300 fthfs Clostridium hathewayi DSM 13479 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hathewayi; 0.781398401 0.775752379 94414962 catechol Pseudomonas aeruginosa PA7 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 1.403941618 1.414940956 1.401020135 1.426635301 1.389549853 1.41761152 1.378999105 1.404254266 1.363818887 1.378351172 1.375496366 1.40703186 1.383747708 1.353248836 1.380100284 1.37379014 1.402483759 1.356223589 90420452 poba Aurantimonas manganoxydans SI85-9A1 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Aurantimonas;species:Aurantimonas manganoxydans; 0.972306969 0.949219768 0.955208447 0.953111199 0.947143746 0.950101624 0.944618853 0.933693428 1.020537409 0.952728376 0.964086458 0.957074443 0.906759982 0.920208482 0.851546242 0.941380341 0.98098967 0.971787629 223470335 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.006211927 1.010407381 0.970849589 0.96398675 0.95562511 0.976991077 0.916053056 0.947542772 0.977535218 0.952938193 0.928602196 0.959613517 0.880197556 0.938492029 0.860419809 0.927104991 0.984918223 1.014352873 25900754 fthfs uncultured bacterium Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria; 1.098284974 1.097748196 1.126682287 1.121363783 1.136724388 1.115841357 1.123327523 1.153904316 1.100712808 1.09882447 1.119249682 1.115167208 1.141754524 1.084922979 1.092490338 1.124627763 1.102025086 1.097779266 307217221 cysI Halomonas elongata DSM 2581 Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas;species:Halomonas elongata; 1.63959736 1.614940789 1.589229251 1.575178861 1.577446104 1.645429669 1.561863111 1.579373759 1.561819571 1.568603199 1.58976071 1.569595658 1.575744363 1.56366437 1.566086778 1.569736407 1.628911604 1.578533408 336319885 amyA Cellvibrio] gilvus ATCC 13127 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas;species:[Cellvibrio] gilvus; 0.996269819 0.986387543 1.007422982 1.012964377 0.995060118 0.974867815 0.972017336 0.962097332 0.990327396 0.998110499 1.002507337 1.006308649 0.962005024 0.950245208 0.949234645 0.916848438 1.023418066 1.02881047 77378573 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.912136457 0.824306385 0.870221617 0.84790554 0.91200413 0.859410715 0.805633841 292677813 SoxB Oligobrachia mashikoi endosymbiont E Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 1.0883291 1.08727787 1.070203858 1.125840863 1.145307266 1.086349475 1.070826327 1.068924665 1.070259628 1.058214457 1.119198448 1.124425959 1.077432956 1.056741847 1.085909235 1.081960877 1.11731283 1.045834494 284165251 mdlc Haloterrigena turkmenica DSM 5511 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloterrigena;species:Haloterrigena turkmenica; 0.895994697 0.888249953 0.930469524 0.923960009 0.934924272 0.885590235 0.924998581 0.87223852 0.902297397 0.971308211 0.930701524 0.880028886 0.93865896 0.862940547 0.844690752 0.826892478 0.97778018 0.901153739 66969928 phenol_oxidase Hortaea acidophila Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Dothideales;genus:Hortaea; 0.96103842 0.954128758 0.963217449 0.941997544 0.907116855 0.881280081 0.918002306 0.954150821 0.966688351 0.899947216 0.912808109 0.925820503 0.87447877 0.876926052 0.873827771 0.920164581 0.970931754 0.990690347 133910295 chitinase Saccharopolyspora erythraea NRRL 2338 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 0.888522153 0.896984365 0.873666107 0.840601982 0.86166981 0.866734454 0.877722066 0.847911549 0.818735827 0.858932748 0.861445348 0.85564334 0.892650853 0.836711386 0.809989929 0.903233279 0.896545366 76809670 cysI Burkholderia pseudomallei 1710b Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia pseudomallei; 1.309724502 1.277948828 1.282727797 1.285488874 1.231029182 1.280524301 1.22999774 1.256133682 1.291682547 1.261152388 1.252166527 1.265967438 1.219458483 1.210781236 1.206962245 1.226923831 1.284020632 1.261104357 34102341 atza Chromobacterium violaceum ATCC 12472 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Chromobacterium;species:Chromobacterium violaceum; 1.185282696 1.175905642 1.121820846 1.174166364 1.144556085 1.179901924 1.153237532 1.156990244 1.159464376 1.121162361 1.13411342 1.132378547 1.120043874 1.099262567 1.136614966 1.16095705 1.157868902 1.1616703 118170179 bphc Mycobacterium smegmatis str. MC2 155 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 1.218887774 1.184976825 1.183688094 1.190651853 1.18692439 1.214445532 1.152260285 1.158192508 1.19368842 1.175201493 1.157200961 1.176216129 1.150630103 1.135317096 1.137676791 1.148498591 1.214082718 1.181291125 71919825 cmua uncultured bacterium Organic Remediation Chlorinated solvents NA superkingdom:Bacteria; 1.107183127 1.095586685 1.128349229 1.062259702 1.144794063 1.098062396 1.116871257 1.06118698 1.038695006 1.084619774 0.968751006 1.104338997 1.033346974 1.067952943 1.020154665 1.105655411 1.085160921 1.160369059 328835348 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.062590212 1.035870788 1.036690791 1.090593328 1.00302399 1.058316772 1.020996971 1.062617047 1.073415965 1.032855729 1.033318486 1.044285262 1.007657729 0.999343537 1.001618858 1.019285812 1.068535825 1.010782814 315001624 aoxb uncultured alpha proteobacterium Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 0.80476429 0.785721667 0.808694029 379064403 phytase Pseudomonas stutzeri ATCC 14405 = CCUG 16156 Phosphorus Phytic acid hydrolysis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 1.075893353 1.073132164 1.040961035 1.062196994 1.039547779 1.070696839 1.069187889 1.024226831 1.070958301 1.033604036 1.036802955 1.04535882 1.017431563 0.982298277 1.001344953 1.001668226 1.058261157 1.075854087 388585099 nhh Microvirga sp. WSM3557 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Microvirga; 0.854298049 0.995351152 0.96736846 0.932069737 0.94017217 0.909692332 0.922376539 0.911170911 0.922479858 1.008245746 0.96956982 0.963856033 0.906790549 0.91504458 0.879539132 0.859075007 0.894704877 0.938345015 49240193 GAPDH_Calvin Bartonella quintana str. Toulouse Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bartonellaceae;genus:Bartonella;species:Bartonella quintana; 1.010770038 0.908502278 0.980055666 0.941556078 0.914285669 0.898230409 0.951541512 0.922709508 0.934825294 0.918003016 0.940047736 0.947661569 0.963775945 0.880390898 0.874849905 0.869754965 0.895655894 0.874297127 71848859 tktA Dechloromonas aromatica RCB Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Dechloromonas;species:Dechloromonas aromatica; 0.772432703 0.796613895 0.832096442 0.822072559 0.888470971 0.985588597 0.887417229 0.857579799 0.813520274 0.816296098 0.926913634 0.814818047 221533924 gdh Rhodobacteraceae bacterium KLH11 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 1.0382142 0.982379265 1.018131702 1.061350954 1.003604511 1.039155675 0.968585505 1.043388868 1.050167178 1.011158165 1.028605481 1.03156644 0.983816611 0.986776737 0.983524646 1.023586254 1.061169845 0.990763786 118703430 mdla Sphingomonas wittichii RW1 Organic Remediation Aromatics Aromatic alpha hydroxy acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 1.048578562 1.078860364 1.037269929 1.090449155 1.023006504 1.077759101 1.022408327 1.052505913 1.032455123 1.068027152 1.049220955 1.074193787 1.052087417 1.025982358 1.031531622 1.064470312 1.064933771 1.069979699 66043936 atzb Pseudomonas syringae pv. syringae B728a Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae; 0.939621499 0.970019229 0.942328936 0.978879102 0.960481484 1.006875962 0.946651887 0.935752129 0.925567537 0.943513093 0.978410072 0.994187092 0.953314029 0.983888574 0.93689806 0.923682487 0.976286679 0.942575569 76803680 alkb uncultured bacterium Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria; 1.234039478 1.234089696 1.222165201 1.255155085 1.226243785 1.192616694 1.182978687 1.239082271 1.243249083 1.178533492 1.2159457 1.235077355 1.182359156 1.170917615 1.178229045 1.182921012 1.210247537 1.192358051 240278137 endochitinase Ajellomyces capsulatus H143 Carbon Cycling Carbon degradation Chitin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces capsulatus; 0.92204779 0.947502028 0.870432705 0.946519428 0.878668403 0.982883882 0.909188663 0.881712004 0.903110318 0.904169811 0.860487026 0.921708193 0.889900967 0.922724659 0.868717222 0.854869333 0.973028624 0.948839772 221724457 tktA Agrobacterium radiobacter K84 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 0.855890085 0.891607573 0.831962315 0.862055845 0.812737476 0.812065239 0.805192876 0.864128595 0.856830744 374349028 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.843589044 0.842029189 0.833472741 0.835057253 0.885211339 0.812155926 0.78623655 0.878568286 0.868308702 0.807182157 0.83213889 0.881507928 0.793993546 0.873765502 45269099 bphc Rhodococcus pyridinivorans Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 1.085316614 1.204186573 1.180815465 1.048398451 1.048749913 1.139573359 1.058814591 1.031199589 1.040676047 1.077098709 1.10950038 1.078089696 1.012630241 1.040499075 1.001352867 1.021951482 1.053909475 1.117421638 288918409 pectinase (pectate_lyase) Frankia sp. EUN1f Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 1.120195987 1.119142345 1.095016148 1.103489636 1.089668748 1.121520025 1.076277635 1.094390257 1.112400363 1.117664081 1.045589075 1.094189407 1.058145786 1.055651668 1.017058404 1.08737078 1.104581048 1.13784644 133912646 urec Saccharopolyspora erythraea NRRL 2338 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 0.960953878 0.971703228 0.945435466 0.97099877 0.953177054 0.938670558 0.943137947 1.001527538 0.941407049 0.950484037 0.903132887 0.922530952 0.892480001 0.908946296 0.864838506 0.900525162 0.95807987 0.996114699 358755007 chitinase Granulicella mallensis MP5ACTX8 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Granulicella;species:Granulicella mallensis; 0.79436006 0.805361468 213408365 glucoamylase Schizosaccharomyces japonicus yFS275 Carbon Cycling Carbon degradation Starch superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Schizosaccharomycetes;order:Schizosaccharomycetales;family:Schizosaccharomycetaceae;genus:Schizosaccharomyces;species:Schizosaccharomyces japonicus; 0.823633672 0.830534052 62512303 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.142349732 1.124312888 1.104645632 1.115819263 1.118702201 1.167408809 1.114436224 1.085221923 1.097671367 1.114069739 1.097192687 1.062216296 1.058934283 1.085140194 1.064516257 1.0578912 1.164892598 1.126076693 220718747 oxdb Variovorax paradoxus S110 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 1.276853776 1.219155312 1.198794902 1.237270949 1.224423266 1.260153892 1.237948714 1.254316962 1.2363985 1.219959114 1.212447269 1.212826371 1.218768638 1.174006642 1.163738305 1.183898321 1.229182978 1.190617129 308178074 inulinase Arthrobacter arilaitensis Re117 Carbon Cycling Carbon degradation Inulin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter arilaitensis; 0.854788429 0.887688548 0.849353689 0.904513139 0.881681441 0.88157321 0.820596135 0.84399427 0.89767065 0.941698001 0.855833926 0.867349194 0.852995252 0.903656788 0.843211749 0.881593528 0.913949424 0.904164915 304403696 chitinase Paenibacillus curdlanolyticus YK9 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus curdlanolyticus; 0.801894751 0.878164451 0.848585219 0.888415045 0.791788519 0.894886321 0.872471154 0.840411239 0.823680032 0.845344755 0.892619376 0.869501878 0.823401152 0.844520757 0.793078695 0.800296896 71919878 cmua uncultured bacterium Organic Remediation Chlorinated solvents NA superkingdom:Bacteria; 0.981845449 1.036548329 0.955474813 1.001587452 0.965474615 0.966600494 0.976516623 0.958198485 0.977504772 0.943396006 0.928871713 0.976039345 0.901378492 0.906586136 0.815512281 0.889035623 0.95396312 1.003311008 398837233 catb Herbaspirillum sp. YR522 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herbaspirillum; 0.953627341 0.904065259 0.928469582 0.922201511 0.896677497 0.916837841 0.941774366 0.903540075 0.910031733 0.913758651 0.861874817 0.885943045 0.880313126 0.82759193 0.874549929 0.885714382 0.946776738 0.927054878 364002961 pme Streptomyces sp. W007 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 0.968257637 0.982445463 0.945483321 0.971331368 0.956174316 0.984980839 0.935173071 0.95762335 0.98769684 0.994419627 0.960714781 0.994352514 0.950622906 0.962713613 0.975221843 0.973082933 0.970025191 0.979224096 388556628 mcra uncultured archaeon Carbon Cycling Methane Methanogenesis superkingdom:Archaea; 0.804830905 0.781079256 0.799691684 0.879981287 0.819068074 0.863815324 0.852449056 0.806304088 0.857093038 7592856 rubisco Thiobacillus sp. 'Lamellibrachia symbiont-2' Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 0.915987506 0.978286748 0.928126694 0.962892007 0.915836862 0.95379455 0.894545707 0.896551348 0.908484573 0.906564559 0.927601182 0.924836892 0.903403403 0.908097742 0.886017921 0.90105011 0.90294084 0.955483621 347529260 tfda Sphingobium sp. SYK-6 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium; 0.824246756 0.804440719 0.823981244 0.784597445 0.861650855 0.816903609 0.820320899 0.888348968 0.827248887 312197916 xylj Frankia sp. EuI1c Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 0.904179754 0.925134082 0.912179046 0.888676354 0.91312229 0.891995486 0.826808856 0.804507895 0.901744732 0.8592089 0.906750618 0.85191609 0.854589345 0.842228959 0.832328757 0.920118602 0.893920789 256830948 fthfs Desulfomicrobium baculatum DSM 4028 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfomicrobiaceae;genus:Desulfomicrobium;species:Desulfomicrobium baculatum; 0.993036132 1.035751376 0.983576246 0.98783943 1.008100142 1.035766092 0.972133349 0.971770204 0.972880764 0.993223678 0.976993158 0.957472256 0.941705263 0.97217168 0.90293894 0.923555782 1.023409641 1.047506121 374854789 fccab uncultured Thermus/Deinococcus group bacterium Sulfur Sulfide Oxidation NA superkingdom:Bacteria;phylum:Deinococcus-Thermus; 0.936177906 0.932256258 0.934370826 0.951174179 0.964190509 0.931531164 0.955725139 0.987062344 0.94552881 0.902021085 0.943196362 0.93317967 0.960727812 0.871524866 0.838259537 0.870960524 0.955174814 0.910081645 290962060 xylanase Streptomyces scabiei 87.22 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces scabiei; 1.159961717 1.196445042 1.075401605 1.190990823 1.088491321 1.166748359 1.104809805 1.099046659 1.133828285 1.126200972 1.079328052 1.129052222 1.086472454 1.080825802 1.035191117 1.112267827 1.200587795 1.153575325 324314101 ppx Deinococcus proteolyticus MRP Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus proteolyticus; 1.179686671 1.122185436 1.119625435 1.166951168 1.126287472 1.145568222 1.119154845 1.126286289 1.144642873 1.14671889 1.132374729 1.15412305 1.107090632 1.116929991 1.095143708 1.142671555 1.164610631 1.151096402 90954651 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.953569846 0.956808201 0.909584268 0.924724622 0.901958929 0.93351398 0.873192229 0.902060633 0.917786773 0.857261778 0.872746972 0.908681753 0.829049725 0.918661403 0.865243297 0.896240653 0.97069679 0.98612312 116194428 protease_serine_fungi Chaetomium globosum CBS 148.51 Carbon Cycling Carbon degradation protein superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 1.118805316 1.116411052 1.10295877 1.095605776 1.114676999 1.113214342 1.114905915 1.074602372 1.079051485 1.127663289 1.10527966 1.081626507 1.076815413 1.107589751 1.081790034 1.072650637 1.091629304 1.130457253 126732427 tktA Sagittula stellata E-37 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 1.070586808 1.069488854 1.048361646 1.057130504 1.069608662 1.078895684 1.053911048 1.058236306 1.067782244 1.069113963 1.033278829 1.07004717 0.991336616 1.026952601 0.964600071 1.018028688 1.036718564 1.041654151 91777436 tktA Burkholderia xenovorans LB400 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 0.919341771 0.879487956 0.865755577 0.943772551 0.82910486 1.00273753 0.856747939 0.892809939 0.904059856 0.931992938 0.959828898 0.91722291 0.875121566 0.872560749 0.841424943 0.841733697 0.947516674 0.868675717 359734805 urec Rhodococcus pyridinivorans AK37 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus pyridinivorans; 1.038987964 0.987644219 1.012935738 1.028682273 0.995196005 1.044896359 1.009784971 1.011271421 1.010207149 0.994573192 0.999957 1.005794218 0.987950806 0.965457227 0.933226238 0.95784901 1.024663071 1.017985018 113880899 amyA Synechococcus sp. CC9311 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 0.982336022 1.055979291 0.984585989 1.002659616 1.024051229 1.03078309 0.99373218 0.995102987 0.983019764 1.006490867 1.020450097 0.989957454 1.020708947 1.027274252 1.01724424 1.013864618 1.012941429 1.030102872 333115496 cmci Pseudomonas fulva 12-X Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fulva; 0.962489064 0.969163665 0.950412142 0.986470343 0.940125249 0.931539065 0.921167224 0.991414451 0.993691839 0.936983091 0.910355097 0.979729619 0.903097665 0.90200352 0.946239093 0.893850148 1.007038508 0.987957213 373548346 cutinase Mycobacterium tusciae JS617 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tusciae; 1.032176686 1.049988797 0.936812158 1.034136478 1.038360324 1.08070703 1.053157955 1.101521533 1.0003629 1.05561757 1.03970304 1.031025214 1.050775266 1.035430296 0.991484523 1.063846041 1.013465337 1.036560441 378731525 chnb Exophiala dermatitidis NIH/UT8656 Organic Remediation Other Hydrocarbons NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Chaetothyriales;family:Herpotrichiellaceae;genus:Exophiala;species:Exophiala dermatitidis; 1.01998198 0.969086476 1.035271888 1.023735462 1.003416791 1.016629097 1.023876099 1.00207706 1.004002774 1.008779603 0.972350846 1.008027478 0.945466053 0.973195111 0.8904343 0.954790816 1.019677616 1.01729857 333456269 CsoS1_CcmK Microcoleus vaginatus FGP-2 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Microcoleus;species:Microcoleus vaginatus; 0.789793997 0.863347073 0.828386013 0.772754849 0.835713047 139003446 nifh uncultured nitrogen-fixing bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.958308712 0.973716565 0.95613866 0.973747047 0.959273529 0.961761656 0.897603917 0.918994595 0.956321385 0.957160973 0.932625331 0.94374516 0.911977934 0.959473947 0.907033707 0.913618735 0.95172141 0.963298557 116090309 aoxb Ancylobacter sp. OL1 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Ancylobacter; 0.998884525 1.016550976 0.998592035 1.021808608 1.061779943 1.057781418 0.983248992 1.064729202 1.021407008 1.060250729 1.006539839 1.16586906 0.951503913 0.969042736 0.943487992 1.035524736 0.982192331 1.030423211 184199807 amyA Kocuria rhizophila DC2201 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Kocuria;species:Kocuria rhizophila; 1.014470937 0.985183329 0.961893459 0.987173714 0.963355383 0.995102754 0.988096409 0.970513117 0.987963657 0.962487072 0.968458062 0.993821522 0.963111029 0.932782277 0.958129752 0.975227784 1.001747855 0.942694833 225793556 amyA Acidobacterium capsulatum ATCC 51196 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Acidobacterium;species:Acidobacterium capsulatum; 0.904024107 0.925753053 0.852484353 0.896300194 0.903915311 0.8952829 0.878267566 0.89154302 0.855669873 0.891799707 0.863748332 0.898429387 0.831660731 0.808165541 0.827776686 0.874217832 0.834873333 304438332 fthfs Selenomonas sp. oral taxon 149 str. 67H29BP Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas sp. oral taxon 149; 1.070389873 1.02090867 0.981700066 1.017097804 1.001868995 1.028212045 1.019179694 0.953615475 0.947798649 1.011131131 1.012969445 1.000908502 1.003527012 0.985240918 0.963640605 1.030719902 1.030158267 1.009861351 124258879 SoxC Methylibium petroleiphilum PM1 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 1.253032459 1.221728217 1.213062428 1.265157808 1.264710351 1.235232927 1.263527224 1.283146777 1.242370868 1.221453455 1.238856847 1.277118099 1.223255693 1.196381826 1.275597103 1.249943297 1.214161768 1.18828005 357398940 amyA Streptomyces cattleya NRRL 8057 = DSM 46488 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces cattleya; 0.917461781 0.92434953 0.889339384 0.920779601 0.921997506 0.90392929 0.930818549 0.916785951 0.878131529 0.911026722 0.902512387 0.917778534 0.846918376 0.865312391 0.807621578 0.877093321 0.92094763 0.949579956 336008100 xylanase Lachnospiraceae bacterium 1_4_56FAA Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae; 0.998659286 1.085064263 0.966753869 0.993463217 1.10383857 1.032208201 1.044915713 1.006699318 1.031279703 1.034948803 1.025989973 1.066069804 1.005025804 0.973166098 0.905137346 1.016172764 1.043349488 1.011417113 21114404 cysI Xanthomonas campestris pv. campestris str. ATCC 33913 Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas campestris; 0.807657382 0.820258146 0.815529141 0.808101148 0.817145837 0.846269179 298554195 amyA Deinococcus radiodurans R1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus radiodurans; 1.193851344 1.185263984 1.107700297 1.177913674 1.16891704 1.1681847 1.174909122 1.20208641 1.151385144 1.18496922 1.134736481 1.15804319 1.167946237 1.175167238 1.121961383 1.205415154 1.186040989 1.178487144 219883278 merb Arthrobacter chlorophenolicus A6 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 1.008301276 1.012873649 0.945205967 1.025597762 0.935557829 1.009043948 0.911892419 0.938145666 0.973936714 0.984156103 0.938749164 0.949882997 0.940471982 0.957583076 0.932002945 0.952221259 1.017816492 1.016676486 146192974 soxY Bradyrhizobium sp. ORS278 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 1.252371742 1.252499701 1.248302548 1.229005679 1.2198555 1.285307217 1.241962757 1.232296112 1.200354595 1.221709474 1.261862116 1.251185178 1.212757445 1.235763197 1.225605467 1.236684249 1.242957338 1.231992427 291613464 arsc Sideroxydans lithotrophicus ES-1 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Gallionellales;family:Gallionellaceae;genus:Sideroxydans;species:Sideroxydans lithotrophicus; 0.949134451 0.989145993 0.970441903 0.990601341 0.963174676 1.023289602 0.941977907 0.929367944 0.89185055 0.973941851 0.933849458 0.92862294 0.932235739 0.950736616 0.96569951 0.934839577 0.955549045 1.009642905 153010226 FBPase Ochrobactrum anthropi ATCC 49188 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum anthropi; 1.035969734 0.996554951 1.025513799 0.996802739 0.99336733 1.046664959 1.003583959 1.030004326 1.01462451 1.041779322 1.002060944 1.018878101 0.951363842 1.010426084 0.999952326 1.018397592 1.046094899 1.059427425 192764352 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.211995774 1.154001966 1.178222253 1.214557157 1.174635828 1.19609473 1.18152637 1.182668138 1.198769017 1.152928458 1.156874265 1.169546265 1.148403732 1.110267544 1.12864596 1.139933518 1.207574895 1.142445523 115391876 vana Streptomyces sp. NL15-2K Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 1.022678038 1.021285541 1.044951639 1.014920251 0.916240386 1.031294232 0.95747508 0.999658575 0.997071747 0.994552643 0.960465802 0.977272321 0.90073906 0.979066201 0.949573626 0.974575594 1.034621761 1.031617902 336068935 nosz Prevotella multisaccharivorax DSM 17128 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella multisaccharivorax; 1.189340829 1.154377711 1.152683845 1.206348026 1.107544835 1.109895712 1.105611528 1.159298912 1.166548075 1.117490069 1.133861383 1.159276679 1.113581685 1.074585275 1.101233279 1.131254721 1.173342688 1.12664848 126236596 bphF1 Mycobacterium sp. JLS Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 0.985599857 1.00917059 1.000783158 1.039032092 1.040365271 0.942225026 0.982749886 1.033550059 1.020206124 0.995609237 1.015232508 0.99291174 0.93718497 0.927475639 0.920232081 0.90131016 1.004766612 0.999808259 37548718 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 1.455504428 1.444495495 1.414460036 1.435711505 1.425938854 1.449898938 1.407880722 1.404334426 1.412849804 1.407663549 1.413754532 1.432162725 1.378014632 1.358720938 1.359481905 1.402224342 1.425890961 1.399696729 91978281 phn Rhodopseudomonas palustris BisB5 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 1.173927481 1.088698852 1.099998247 1.124844268 1.098824159 1.127678925 1.086108988 1.106547681 1.083607734 1.084601188 1.078490618 1.093565572 1.086066262 1.065671707 1.050689383 1.058694231 1.129853784 1.090735103 218433141 hcab Escherichia coli Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia coli; 0.985377637 0.979950565 0.977563509 0.986293663 0.938699219 0.947066514 0.936554359 0.931932878 0.969264746 0.963508099 0.934882234 0.978188954 0.958883122 0.961738314 0.920632991 0.901729831 0.988217772 0.976861624 119955112 cutinase Mycobacterium vanbaalenii PYR-1 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 1.287737951 1.236695895 1.252299203 1.279147331 1.203220142 1.298473346 1.208613036 1.25016003 1.273445674 1.238065213 1.241501866 1.241033293 1.215917032 1.234572759 1.218448978 1.25399361 1.291680359 1.244523711 110823901 chnb Rhodococcus sp. RHA1 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 0.838578388 0.865860146 0.885330372 0.88525685 0.883199618 0.869778741 0.86056623 0.84295561 0.847445169 0.844139162 0.905144757 0.891154129 0.852416092 0.830393671 0.802708045 0.850341156 0.830158172 254271903 tfda uncultured bacterium Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria; 0.844696997 0.870076902 0.873018829 0.819698623 0.84980991 0.818332578 0.823165926 0.824435071 0.875678212 0.866088857 94471295 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.903371977 0.916250334 0.847279674 0.907324933 0.878970508 0.947487507 0.862924225 0.881825181 0.861151294 0.897845131 0.869006589 0.887049313 0.882547699 0.92282405 0.941241202 0.870067646 0.911120906 0.934318203 341925985 chitinase Chitiniphilus shinanonensis Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Chitiniphilus; 0.968031589 0.920755522 0.857472508 0.950642155 0.924231905 0.906462644 0.930032669 0.904875326 0.920531517 0.920939208 0.937507808 0.933698351 0.898502645 0.909364564 0.898522671 0.932314291 0.940250496 0.915438516 162451576 xylanase Sorangium cellulosum 'So ce 56' Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 0.859185303 0.873100248 0.860769539 0.900248458 0.903039347 0.899701223 0.894717051 0.854143067 0.869846004 0.890143161 0.888463741 0.874370506 0.894392845 0.874925999 0.826764144 0.86298169 0.867589606 0.860941963 357583311 arsc Desulfovibrio sp. FW1012B Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 1.370047058 1.329434552 1.334613817 1.332270335 1.316732911 1.328555877 1.296857315 1.31373677 1.323934204 1.303275912 1.321616263 1.324225607 1.29046083 1.265293039 1.315684178 1.287300486 1.338675368 1.28419243 254029798 narb uncultured bacterium Nitrogen Assimilatory N reduction NA superkingdom:Bacteria; 0.979949951 1.01215887 0.987363595 1.004819456 1.038188522 1.007298195 0.957567545 0.965041983 0.976550221 1.026432356 1.012839467 1.038773412 0.965786162 1.025213372 1.013874661 0.977695078 1.008645417 1.024826271 156039581 phenol_oxidase Sclerotinia sclerotiorum 1980 Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Sclerotinia;species:Sclerotinia sclerotiorum; 0.820125914 0.791268558 0.861099225 0.868807114 0.840905902 0.871443815 0.902629837 0.85068277 0.817608675 0.842622651 0.829796168 0.802343839 0.876509503 154162362 catechol Xanthobacter autotrophicus Py2 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 0.818211356 0.861033348 0.844337949 0.82906571 358244640 linb Gordonia araii NBRC 100433 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia araii; 1.080610021 1.076518882 1.050917236 1.104460048 1.101596359 1.073990258 1.062294091 1.112063089 1.074905805 1.054159824 1.055269899 1.067737195 1.062810978 1.068649707 1.137303472 1.066576953 1.109073889 1.046086566 78358320 CsoS1_CcmK Desulfovibrio alaskensis G20 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio alaskensis; 0.992165487 0.96534789 1.031299447 1.051733429 0.993097576 1.00331598 1.014769296 1.011468305 1.066350725 1.027977038 1.033265924 1.051219369 0.965722072 0.925684349 0.896501357 0.967280806 1.026807106 1.031238716 320123754 ben_bcla Desulfobulbus propionicus DSM 2032 virulence NA NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobulbaceae;genus:Desulfobulbus;species:Desulfobulbus propionicus; 0.936734642 0.938925755 0.895707622 0.951975726 0.859596106 0.905554575 0.865296639 0.917245684 0.953414664 0.917806693 0.87861118 0.898729361 0.84774531 0.859247553 0.824138814 0.883371036 0.949756323 0.964884799 240138506 tktA Methylobacterium extorquens AM1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium extorquens; 0.911130622 0.896024109 0.91211896 0.92097513 0.846595328 0.91529982 0.906523121 0.920443475 0.927481996 0.896917928 0.844097399 0.907091747 0.854266269 0.897970431 0.791391156 0.889860201 0.914354277 0.933799311 206565176 ppk Klebsiella pneumoniae 342 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 0.884241023 0.908823385 0.812462766 0.895397226 0.883012683 0.839109038 0.815027401 0.844207148 0.856875519 0.803211011 0.831678572 0.843951945 0.846624006 0.834535778 0.876910229 0.883760368 182439074 amyA Streptomyces griseus subsp. griseus NBRC 13350 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseus; 0.944057839 0.956593358 0.865520882 0.946721056 0.875496304 0.910478817 0.885480954 0.863789785 0.898076123 0.909014879 0.825033782 0.909662983 0.875177801 0.907375933 0.850580694 0.886302137 0.90954188 0.983366347 76056999 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.898970006 0.931250306 0.805025379 0.889925978 0.857903986 0.885240081 0.818711212 0.868380519 0.86426692 0.878410014 0.841283803 0.830765209 0.844213204 0.857924146 0.888415258 0.943617362 211961049 nosz Pseudovibrio sp. JE062 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 1.045157386 1.019987877 1.067809164 1.059772323 1.039293008 1.104448627 1.046426909 1.092278341 1.051929659 1.004444097 1.035558978 1.015235878 0.975608507 0.952483629 0.970895359 1.006931023 1.055106439 1.030197083 388554477 gdh Pseudomonas chlororaphis O6 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas chlororaphis; 0.801693534 0.828482127 0.815087197 0.844052561 0.859811658 0.80065309 0.835642315 0.831023593 0.84324217 0.823722887 0.836485852 0.807107193 0.810039136 0.813361964 0.871163194 114762874 FBP_aldolase Pelagibaca bermudensis HTCC2601 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pelagibaca;species:Pelagibaca bermudensis; 0.924615129 0.956026188 0.915001184 0.943799915 0.926088862 0.970845282 0.917206105 0.945155914 0.930320947 0.922323935 1.004622443 0.951357986 0.922755972 0.902154703 0.893415561 0.915773039 0.942151978 0.979333621 385674661 limeh Amycolatopsis sp. ATCC 39116 Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis; 1.274543734 1.233968009 1.2504909 1.283025646 1.231368833 1.294649439 1.244761769 1.274839955 1.254858755 1.21761187 1.238812271 1.273995861 1.19969608 1.225804242 1.194225783 1.226715339 1.276160288 1.231859087 255107125 GAPDH_Calvin Thalassiobium sp. R2A62 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Thalassobium; 1.067518305 1.039442023 1.037950382 1.040947815 1.123976925 1.052867681 1.025161897 1.066446075 1.170401003 1.024159508 1.039183699 1.019202407 1.042724671 0.982052543 0.986550905 1.029593255 1.045312898 1.02451482 359686433 b_lactamase Leptospira santarosai str. 2000030832 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Leptospiraceae;genus:Leptospira;species:Leptospira santarosai; 0.810295534 0.820954086 256560843 ara Brachybacterium faecium DSM 4810 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dermabacteraceae;genus:Brachybacterium;species:Brachybacterium faecium; 1.160621196 1.143633585 1.092897778 1.134425704 1.089815642 1.124309026 1.101275657 1.131661107 1.124044917 1.133957122 1.087571214 1.109653395 1.069562546 1.081014322 1.032839044 1.101530488 1.124005704 1.136900011 219868935 CsoS1_CcmK Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio desulfuricans; 0.843184649 1.064086359 0.807833821 0.830878509 0.894367884 0.826681232 0.85808748 0.833557129 0.838961939 0.876176489 0.848187502 209499614 mer Burkholderia sp. H160 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 1.045837163 1.048543589 1.008175207 1.0473395 1.024707898 1.02326078 1.004663211 1.037219362 1.025472844 1.010434345 1.013789208 1.010766196 1.007621902 1.015118844 0.991629255 1.003471457 1.030803821 1.026142447 86566915 amyA Frankia sp. CcI3 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 1.394928957 1.378474363 1.354045167 1.376241542 1.354239041 1.390899618 1.350283718 1.378789409 1.370178124 1.359306704 1.341632976 1.380620706 1.333173314 1.325528947 1.33787538 1.351464174 1.371618713 1.351486494 296014816 amyA Planctomyces limnophilus DSM 3776 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Planctomyces;species:Planctomyces limnophilus; 0.922290262 0.927083287 0.889453662 0.881207375 0.885030916 0.906058783 0.835988737 0.817102172 0.890502047 0.861622353 0.85015254 0.856414142 0.846363489 0.838036075 0.812751931 0.888054999 0.887775617 320534420 amyA Actinomyces sp. oral taxon 171 str. F0337 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 171; 0.930954482 0.994694873 0.897506975 0.933253955 0.904295979 0.933905928 0.866769244 0.82484026 0.921756347 0.921603295 0.90923793 0.949689452 0.910736718 0.923839613 0.9079627 0.897684695 0.969940583 165874785 norb Azospirillum brasilense Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum; 0.960835893 0.978532441 0.904836057 0.944897199 0.923065528 0.96749632 0.930228606 0.909674439 0.913938736 0.960528667 0.944774559 0.937798361 0.924193083 0.907206571 0.900296774 0.92748679 0.96336333 0.96736766 399520369 aln Pseudomonas pseudoalcaligenes CECT 5344 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas pseudoalcaligenes; 0.776268687 0.831630753 0.82018041 0.822641946 0.819322391 0.865510394 0.865555664 0.849018144 0.826250036 0.833711695 0.85842147 0.912097611 0.826719786 0.859593237 0.798347777 0.812131307 0.871969596 0.861438978 81176593 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.863624783 0.981857552 0.971518292 0.891240357 1.003852826 1.015784622 1.054656952 0.93088948 0.92379995 1.113158455 1.104403307 0.987728955 1.003725133 1.082474131 0.899777425 0.925088415 0.882432003 0.987691539 319742063 norb Lautropia mirabilis ATCC 51599 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Lautropia;species:Lautropia mirabilis; 1.358308942 1.316585787 1.345932511 1.37526237 1.327254434 1.375562616 1.34987352 1.365922827 1.34566307 1.341725423 1.3420232 1.353138008 1.319197732 1.305329533 1.292491936 1.333885252 1.350466384 1.327246728 219808343 aps_apra uncultured bacterium Sulfur adenylylsulfate reductase NA superkingdom:Bacteria; 1.045787888 1.024768429 1.042764798 1.071106613 1.061333735 1.030835754 1.066439249 1.058855382 1.069741051 1.009148662 1.042070118 1.087861103 0.995442331 0.976046783 0.987415583 1.024764695 1.034711481 1.012540286 151302311 aps_apra Desulfobacterium anilini Sulfur adenylylsulfate reductase NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfobacterium; 0.835234947 0.839824982 0.814524372 0.853195756 0.83377643 0.823052596 0.839758206 0.852180568 0.814525233 0.813194605 0.853848549 0.883883973 3157662 nifh unidentified nitrogen-fixing bacteria Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 1.148960833 1.140664472 1.1631917 1.167561023 1.153232346 1.192521075 1.140622722 1.15073128 1.152622699 1.130653591 1.128892132 1.145398288 1.12805984 1.111137591 1.090770476 1.112866291 1.172400473 1.142794159 316907992 xylanase Bacteroides eggerthii 1_2_48FAA Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides eggerthii; 0.90469986 0.844337782 0.881710245 0.918651283 0.893332278 0.811392256 0.826106422 0.863296439 0.887728006 0.902393077 0.840563352 0.86863348 0.853643063 0.835391461 0.813418462 0.824941875 0.963725758 0.943843496 29652448 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.105149116 1.104570911 1.099352695 1.081787071 1.080353682 1.08660728 1.070755657 1.080328703 1.076175802 1.067624482 1.116199811 1.081494267 1.04530118 1.023345393 1.030558612 1.026750568 1.094668401 1.063376949 300666174 pgk Xanthobacter flavus Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter; 1.091633485 1.083662923 1.036766946 1.068220052 1.038723886 1.049392368 1.013575002 1.077276849 1.046357516 1.018203667 1.051989108 1.093526137 1.009177709 1.041745933 1.067928842 1.043081711 1.075246148 1.041681667 295314226 assa uncultured delta proteobacterium Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 1.160845131 1.095902379 1.126674732 1.118473952 1.107112252 1.064188209 1.054718827 1.069383469 1.12483134 1.104690594 1.137760016 1.113080355 1.113752387 1.042129251 1.019149481 1.029331982 1.126584331 1.098094064 78518659 poba Bradyrhizobium sp. BTAi1 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 1.112923114 1.065832376 1.078061377 1.093635368 1.075043261 1.076082171 1.063725652 1.084939929 1.084130197 1.07184656 1.067713999 1.066341949 1.017718476 1.017805786 0.991276192 1.008550543 1.09695182 1.067891745 338749588 acetylglucosaminidase Acetobacter tropicalis NBRC 101654 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acetobacter;species:Acetobacter tropicalis; 0.858568228 0.877698897 0.888108649 0.913477354 0.903101427 0.841669985 0.910955661 0.837945466 0.843640454 0.812631128 0.830818906 0.821916047 0.869168003 0.878038065 0.880326571 119377454 soxY Paracoccus denitrificans PD1222 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 0.817340397 0.851493279 0.803355649 0.799612981 0.831924743 0.797655717 0.826694464 0.794892326 0.808376857 0.778360787 0.843643182 58176536 phenol_oxidase Coriolopsis gallica Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Coriolopsis; 1.043297672 0.957129431 0.990111133 1.06728199 0.980099616 0.981819117 0.989454991 1.014477095 1.026627315 1.001895538 0.962786952 0.983684646 0.97286061 0.988458867 0.940418647 0.974836511 1.028896899 0.995249953 46200720 tktA Magnetospirillum magnetotacticum MS-1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum magnetotacticum; 1.035291113 1.068650406 0.987043199 1.039077024 1.087135615 1.061763988 1.016045171 1.093153305 1.089016121 1.030108513 0.961007329 1.03769372 1.083539424 1.012099915 1.051855028 1.03476568 1.01652725 1.105493483 328803693 chitinase Aeromonas veronii B565 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas veronii; 0.924703302 0.874406973 0.928276976 0.918984403 0.920147851 0.916086933 0.920924044 0.915651054 0.877460587 0.904070132 0.92223928 0.883248629 0.875969444 0.8847921 0.888147217 0.851067999 0.894486713 0.913123475 39650578 urec Rhodopseudomonas palustris CGA009 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 1.338438207 1.280766842 1.28077686 1.295611824 1.25849979 1.297409936 1.255704527 1.26348359 1.280855463 1.242236573 1.27698367 1.277162948 1.261276012 1.229607335 1.241627777 1.265321435 1.291529681 1.24956629 357224068 mer Marinobacter manganoxydans MnI7-9 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter manganoxydans; 0.801303935 0.849991648 0.885319085 0.83201379 0.851854453 0.820028934 0.828538373 0.831111544 0.812337983 0.791807383 0.814756218 0.813240956 6164963 xylanase Streptomyces thermocyaneoviolaceus Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 0.841005638 0.889683044 0.829394459 0.838135948 0.852703723 0.843453836 0.830967711 0.81949273 0.789908934 0.823214098 0.857138996 0.818129175 0.811177837 0.812897717 0.853539576 0.884328126 302527086 xylg Streptomyces sp. AA4 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 1.257999338 1.27228052 1.245019461 1.274343044 1.319096251 1.34796621 1.257218664 1.241643543 1.281345394 1.267653084 1.353610199 1.304034741 1.252078055 1.213162148 1.238884851 1.240263711 1.338853605 1.236504834 398940490 nitrilase Pseudomonas sp. GM41(2012) Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.808769363 0.879148627 18034265 aps_apra Desulfocapsa thiozymogenes Sulfur adenylylsulfate reductase NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobulbaceae;genus:Desulfocapsa; 0.978554867 0.927018599 1.011906821 0.975813024 0.861498644 0.989934576 0.911625717 0.972383838 0.906758125 0.975462333 0.905637538 0.933596932 0.89039672 0.891728446 1.024071757 0.94307126 0.985041776 0.959627337 139478385 mer uncultured soil bacterium Metal Homeostasis Mercury Detoxification superkingdom:Bacteria; 0.797606666 0.834708968 0.80410042 0.793899846 0.810927927 0.832610896 271498891 alginase Dickeya dadantii Ech586 Carbon Cycling Carbon degradation Alginate superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya dadantii; 0.950385057 0.964416924 0.912940983 0.960160605 0.911899071 0.94101656 0.946455988 0.920878975 0.964510777 0.978009968 0.939885203 0.962101514 0.889035902 0.872767075 0.893610293 0.890571882 0.92500463 0.962936407 220714663 catb Comamonas testosteroni KF-1 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 1.021978722 1.055351085 0.966640839 1.025026016 1.020555923 1.101370251 1.039295234 0.989016764 0.966101093 1.062786171 1.053098971 1.053745596 1.05434845 1.05923592 0.999586573 1.027576408 1.022492865 1.042102926 211586274 tfdb Penicillium chrysogenum Wisconsin 54-1255 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 0.836955621 0.85771981 0.853786787 0.7958281 0.847650358 1.004196928 0.810565231 0.804889436 0.861375328 0.921127814 0.814921702 0.787840621 0.955216496 0.813029524 0.902961885 0.856487121 123228556 phenol_oxidase uncultured fungus Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi; 0.838944821 0.872267408 0.883934113 0.859132545 0.78278965 0.870139493 0.797148541 0.856526123 0.848341918 0.816448316 0.828487073 0.843237663 0.831221658 0.826157414 403310215 one_ring_23diox uncultured bacterium Organic Remediation Aromatics Other aromatics superkingdom:Bacteria; 0.820946176 0.772273577 0.792774733 0.840987317 0.854761537 0.777613443 0.792860862 0.851405123 0.819928102 0.804732133 0.814079765 88865992 vana Jannaschia sp. CCS1 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Jannaschia; 1.026760636 1.000030276 1.062979831 1.050422038 0.994495188 1.012980891 1.003888661 1.022983514 1.021762247 1.030874681 1.045158115 1.036227181 1.014479367 0.971479674 0.989764481 0.983505224 1.063621327 1.013128205 298550443 amyA Deinococcus radiodurans R1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus radiodurans; 1.36886206 1.319829185 1.324054013 1.326363617 1.305676646 1.365685505 1.309181386 1.320160795 1.308686062 1.295405174 1.316677483 1.292031966 1.310022666 1.262114957 1.241074525 1.293826979 1.3575152 1.29531107 404252197 poba Sphingomonas sp. PAMC 26621 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 0.832041857 0.845346381 210159617 cellobiase Collinsella stercoris DSM 13279 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Collinsella;species:Collinsella stercoris; 1.120090999 1.058476212 1.100274678 1.124787734 1.09303933 1.08893473 1.084156299 1.132249417 1.135415401 1.084092544 1.076166193 1.109141082 1.07233197 1.034816134 1.02846738 1.06481444 1.096373332 1.071476132 68164666 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.79378032 0.839435347 0.852069859 0.849713177 0.836882595 0.817979641 0.870848803 0.835533881 0.801764846 0.824718721 0.876696813 0.817658065 0.832141215 0.852961385 0.806254392 21221609 chnb Streptomyces coelicolor A3(2) Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 1.265905271 1.250128077 1.234841153 1.254698797 1.259312733 1.249972827 1.243590618 1.236959747 1.222077898 1.221435829 1.231578249 1.249840713 1.230189441 1.198143647 1.204986417 1.232929096 1.26503338 1.204749988 217413262 ppx Bifidobacterium gallicum DSM 20093 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium gallicum; 0.845344395 0.818283723 0.83866243 0.818358128 0.844909988 0.843605783 0.862198836 340350658 amyA Prevotella nigrescens ATCC 33563 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella nigrescens; 0.99286244 1.0031841 0.907118792 0.977382762 0.915632902 0.990570234 0.862134325 0.88636409 1.097002321 0.947476614 0.924082902 0.955254542 0.898608616 0.926958552 0.892385875 0.942740519 0.971945056 0.958963027 238548638 ccmL Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 0.788781252 0.94118675 0.798594475 0.854650295 0.85223357 0.804981718 0.867965529 300690412 pectinase (pectate_lyase) Ralstonia solanacearum PSI07 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 0.99162795 0.960179366 0.988383025 0.992167399 0.969480364 0.996820787 0.969936163 0.950066745 0.947199236 0.944340748 0.960233245 0.962308274 0.951597869 0.937871888 0.988700847 0.955296198 0.98494189 0.97919578 53757574 ppx Methylococcus capsulatus str. Bath Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylococcus;species:Methylococcus capsulatus; 0.928251065 0.884827433 0.907093972 0.899391344 0.90738118 0.893020106 0.912211119 0.90138612 0.924415929 0.912618526 0.900204598 0.905743378 0.938943012 0.884338538 0.865038668 0.879256684 0.882286243 0.92370032 26278848 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.051530733 0.943498637 0.970245031 1.021158264 1.022770839 1.010984228 1.052651361 1.007675922 0.997913606 0.999943206 1.029826382 0.984625417 0.951518572 0.967258999 0.898575884 0.975160461 0.987604381 1.01033452 71909208 FBP_aldolase Dechloromonas aromatica RCB Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Dechloromonas;species:Dechloromonas aromatica; 0.842285335 0.87876038 0.926531238 0.794270139 0.859720214 0.884475233 0.800779829 0.900291502 0.84410443 51869942 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 0.888345021 0.876461909 0.826172172 0.875597051 0.827545007 0.878030232 0.850063443 0.82861335 0.861396099 0.843447293 0.815946201 0.843239039 0.814557953 0.876369262 0.887730888 315654637 ppx Mobiluncus curtisii ATCC 51333 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Mobiluncus;species:Mobiluncus curtisii; 1.037278889 0.99056069 1.025541843 1.046579367 0.974271618 0.99615912 1.003347707 0.997515014 0.985777153 1.007866482 0.996051655 1.015835574 0.945085662 0.95318335 0.898327886 0.93080528 0.993172692 1.006922106 374606069 amyA Paenibacillus dendritiformis C454 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus dendritiformis; 0.958922619 0.935060307 0.894092527 0.920253498 0.901587713 0.952846683 0.901612288 0.868877537 0.888642161 0.871462276 0.88905937 0.882650527 0.878628184 0.86367236 0.868626292 0.879062417 0.957307361 0.939807942 255021040 CsoS2 Acidithiobacillus caldus ATCC 51756 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus caldus; 1.061110589 1.057055323 1.101954269 1.089838653 1.084256403 1.087140222 1.048297072 1.103378187 1.047339566 1.056389334 1.029060103 1.095362976 1.060097286 1.004849357 1.016218519 1.111791613 1.06743637 0.99951397 323364952 nifh uncultured microorganism Nitrogen Nitrogen fixation NA 1.025167842 0.984718102 1.001633006 1.008931887 1.064711085 1.03530137 1.038126928 1.022598709 1.033162614 0.990441813 1.036315506 1.049495052 1.008091151 0.979721299 0.981785396 1.011327293 1.054583462 0.988011849 400195035 xylg Achromobacter piechaudii HLE Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter;species:Achromobacter piechaudii; 1.10839045 1.13215889 1.140687526 1.136525814 1.135885198 1.117540108 1.104367868 1.108568136 1.072030722 1.106886447 1.113084728 1.116673266 1.109862523 1.063950081 1.087197734 1.101301136 1.131091089 1.11650256 345872424 amyA Thiorhodococcus drewsii AZ1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiorhodococcus;species:Thiorhodococcus drewsii; 0.962536788 1.051418213 1.017004803 1.014360076 0.990402371 0.990914072 0.976698578 0.963263878 0.912758304 0.992221926 0.98034636 0.999936306 0.977845884 0.965860967 0.956344792 0.960193355 0.982630354 1.067673813 388556644 mcra uncultured archaeon Carbon Cycling Methane Methanogenesis superkingdom:Archaea; 0.925637595 0.823114236 0.839703712 0.927617983 0.85444647 0.834797785 0.906337108 0.929907301 0.806280462 0.852722992 0.872287217 0.847967787 0.88178959 197712146 pectinase (pectate_lyase) Streptomyces sviceus ATCC 29083 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 0.892007813 0.935177152 0.819464663 0.933263964 0.923538429 0.897735439 0.873182521 0.839702135 0.852357624 0.925679132 0.814410683 0.897587022 0.830067236 0.868844914 0.863984857 0.912036016 0.919129091 317124488 amyA Intrasporangium calvum DSM 43043 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Intrasporangium;species:Intrasporangium calvum; 0.866715532 0.855527168 0.817085746 0.867002197 0.838071801 0.845378738 0.855461514 0.838203615 0.866778539 0.852989179 0.828682368 0.830488003 0.87390415 0.865441111 375140952 linb Mycobacterium rhodesiae NBB3 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 0.942969296 0.931653126 0.870437219 0.847010182 0.833013196 0.832773679 0.893355802 0.846101573 0.822028406 0.804152598 0.834219755 0.814648687 0.896715804 0.911155247 71163424 linb Xylella fastidiosa Dixon Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xylella;species:Xylella fastidiosa; 1.009254096 1.053342904 1.007424776 1.039592432 1.024093408 1.062294867 1.01293814 1.030512674 0.999587122 1.00024089 1.021745033 1.057165104 1.008264843 0.98185674 1.015881611 0.998834151 1.064370904 0.98155483 133778502 endochitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 1.064998133 1.04961514 1.045450125 1.071594485 1.068869623 1.068176766 1.079713185 1.074214393 1.25601018 1.043967325 1.040255725 1.074292544 1.078291072 1.017931037 1.014548885 1.021122152 1.045118765 1.039662931 63081964 nosz unidentified bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.853627896 0.871202713 0.871778799 0.86289796 0.819430908 0.849620662 0.848913435 0.850975447 0.814425526 0.801550107 0.85509558 0.832973256 0.89528737 0.886075711 27531096 hcab Terrabacter sp. DBF63 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Terrabacter; 1.257885276 1.263023984 1.261206032 1.257390692 1.23518787 1.278582806 1.243602957 1.273644055 1.234898091 1.26929112 1.239458076 1.296146568 1.21883456 1.235512266 1.237491166 1.255873841 1.24376514 1.251064706 56112339 tfth Pimelobacter simplex Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Pimelobacter; 1.183001465 1.174113787 1.111752621 1.135717585 1.125843697 1.14908171 1.10424274 1.103039499 1.101843225 1.141424445 1.096305682 1.136282976 1.150443417 1.127386419 1.110551843 1.135965786 1.166841512 1.180933882 9957143 phenol_oxidase Polyporus ciliatus Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Polyporaceae;genus:Polyporus; 0.815196168 0.895137582 0.835426981 0.824072151 0.825070378 0.797019148 0.819638512 0.833661334 0.816805607 0.824085248 0.824997193 0.844367882 184195709 nitrilase Burkholderia phymatum STM815 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 1.231658762 1.200274303 1.208668598 1.254381406 1.220647279 1.221230338 1.213119202 1.229782823 1.205804072 1.229406999 1.25133805 1.247958376 1.197688811 1.17834 1.172507975 1.196352561 1.205685966 1.209896999 373555364 limeh Mycobacterium tusciae JS617 Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tusciae; 0.858884679 0.851941656 0.88397607 0.847213863 1.038121592 0.883406491 0.904215204 0.882257036 0.827717489 0.883993993 0.843748999 0.993553779 0.847666067 0.868457094 0.849591385 0.893945928 0.928260821 227015885 vana Pseudomonas nitroreducens Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.935689946 0.965509531 0.971517292 0.921667972 0.920256953 0.922183333 0.914913289 0.950890641 0.944538432 0.954340154 0.929518848 0.966781224 0.90279017 0.956422049 0.887758455 0.944289745 0.922276462 0.99006104 2707272 mnp Ceriporiopsis subvermispora Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Gelatoporia; 1.025743139 1.031535387 0.92314275 1.010318404 0.946665327 0.995518668 0.982833646 0.975058011 1.001352548 0.98981021 0.923707829 0.980539635 0.907444667 0.941025383 0.913345827 0.986563935 1.022602156 1.043092805 156742580 xyla Roseiflexus castenholzii DSM 13941 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus;species:Roseiflexus castenholzii; 1.095878725 1.13775225 1.08502683 1.10660297 1.061587601 1.076929609 1.036979718 1.050260722 1.052270373 1.077639305 1.055768768 1.059745814 1.050280205 1.083121661 1.031518677 1.046543039 1.079818113 1.107198368 2251108 amyA Pyrococcus sp. Carbon Cycling Carbon degradation Starch superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Pyrococcus; 0.821273459 0.823015373 0.831303484 0.844254223 0.825084553 0.828300027 0.840993255 0.85495993 0.856721013 0.823385628 0.834832103 0.803716056 0.833820717 0.822949566 0.806550754 0.827882209 56798361 catechol_b uncultured bacterium Organic Remediation Aromatics Other aromatics superkingdom:Bacteria; 0.961012277 1.003442827 0.941146415 0.944346204 0.943379397 0.957190344 0.897309959 0.867882963 0.974067617 1.000360339 0.949263449 0.981926846 0.916088111 0.955512316 0.903746799 0.903232297 0.930651612 0.977518415 78212641 nitrilase Synechococcus sp. CC9605 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 0.962412743 0.983107116 0.919610442 1.031052711 0.944855909 0.945056397 0.913531385 0.885528432 0.911676122 0.933399008 0.927125094 0.936381895 0.868449727 0.921290078 0.882753513 0.930084976 0.97696822 0.982389382 119956902 cutinase Mycobacterium vanbaalenii PYR-1 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 1.27134286 1.253869665 1.223162282 1.262818903 1.217727228 1.240306819 1.204548566 1.228201928 1.225344079 1.213772948 1.211567729 1.237690002 1.204318445 1.178005357 1.194149212 1.237602249 1.249500551 1.223133373 340358548 amyA Actinomyces sp. oral taxon 448 str. F0400 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 448; 1.170826835 1.172301638 1.160956649 1.162956847 1.163492982 1.186162018 1.123564524 1.143304343 1.133950836 1.12612747 1.132290119 1.160232729 1.133730467 1.140214369 1.131532683 1.183341579 1.168358955 189172330 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 0.769425406 0.807595603 0.803722686 0.837875608 0.817618095 0.78733297 0.814692342 0.776468241 296020976 pectinase (pectate_lyase) Cellulomonas flavigena DSM 20109 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas;species:Cellulomonas flavigena; 1.179411581 1.171025136 1.150721753 1.199166803 1.168554627 1.186098563 1.151842928 1.161624023 1.147702327 1.160182415 1.175701349 1.181934864 1.158316704 1.157364565 1.146231653 1.147433112 1.172548662 1.15073525 119951113 fthfs Arthrobacter aurescens TC1 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter aurescens; 0.909629082 0.882415318 0.856531444 0.910113242 0.860371288 0.818472144 0.846597107 0.87535961 0.929871775 0.862463233 0.89066906 0.849809095 0.875123586 237746801 amyA Oxalobacter formigenes HOxBLS Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Oxalobacter;species:Oxalobacter formigenes; 0.987479111 0.973366941 0.978485371 1.012087327 0.974249513 1.03267019 1.006062111 1.002721575 1.002381421 0.993420693 1.045276898 1.001833094 0.962028442 0.950810892 0.914786515 0.941513836 1.019219122 1.021407921 39943520 tannase_Cdeg Magnaporthe grisea 70-15 Carbon Cycling Carbon degradation Tannins superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 0.818753417 0.78640054 0.798774693 0.820128002 225155811 pula Diplosphaera colitermitum TAV2 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Diplosphaera;species:Diplosphaera colitermitum; 0.998576312 1.088783033 1.032522502 1.035437565 1.004108004 1.032649571 1.01673073 1.037101035 0.977074055 1.001620967 0.971889668 1.024830639 1.034024753 0.975017904 0.993805113 0.934611732 1.023499067 1.006361181 154155569 chnb Parvibaculum lavamentivorans DS-1 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Parvibaculum;species:Parvibaculum lavamentivorans; 1.343704927 1.238329309 1.229881529 1.224265404 1.234872114 1.257012817 1.206656587 1.261164517 1.254575212 1.194455419 1.226605159 1.247721731 1.245177204 1.156585851 1.204392187 1.230977366 1.267398561 1.221917842 295977338 ppx Gluconacetobacter hansenii ATCC 23769 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter hansenii; 1.046542314 1.002739901 1.024184998 1.037304036 1.023878023 1.04657763 1.030272095 1.031705702 1.039056314 1.029833514 1.035926315 1.027704272 1.029058296 0.998008308 0.965026856 0.962820011 1.065417702 1.020021444 385739471 phn Bradyrhizobium sp. WSM1253 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.818845824 0.857512227 0.822751998 0.878954587 0.81441425 0.806296868 0.802010259 0.81418827 0.81114961 0.842934691 0.812768081 0.798134302 1.022731628 0.864743259 0.836640909 23013190 dsra Magnetospirillum magnetotacticum MS-1 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum magnetotacticum; 0.858140235 0.959270871 0.825601913 0.900447366 0.830512834 0.86077779 0.855609531 0.851410781 0.852980059 0.872745463 0.931322104 0.863708709 145226755 hcab Rhodococcus sp. DK17 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 0.894733043 1.069500965 1.056740478 0.895875607 0.878524786 0.960481747 0.90670355 0.894230813 0.901666556 0.952518237 0.867205529 0.874203406 0.857251166 0.865660596 0.902149212 0.86095956 0.927173758 0.950953576 334703032 endoglucanase Aeromonas caviae Ae398 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas caviae; 1.303785497 1.311576638 1.276947702 1.27224335 1.311601127 1.296831468 1.245630891 1.271817973 1.292344529 1.26955412 1.23464066 1.282972213 1.25147889 1.273354296 1.252786267 1.276850819 1.244603363 1.279312219 386692596 urec Micromonospora lupini str. Lupac 08 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Micromonospora;species:Micromonospora lupini; 1.218451574 1.209847361 1.190680272 1.197684802 1.169477332 1.213237712 1.144496171 1.172594622 1.176527455 1.178896233 1.183806576 1.187416873 1.149926543 1.16649201 1.14056932 1.175402776 1.220144661 1.178560759 284041910 xylj Conexibacter woesei DSM 14684 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Solirubrobacterales;family:Conexibacteraceae;genus:Conexibacter;species:Conexibacter woesei; 0.986784598 0.976378767 0.983519108 0.976346206 0.930380595 1.018216061 0.943148732 0.990833637 0.984111759 0.979260257 0.938424406 0.953092748 0.925430533 0.973889594 0.921219596 0.957117646 0.975877152 0.987359459 119673096 dsrB Pyrobaculum islandicum DSM 4184 Sulfur sulfite reduction NA superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum islandicum; 0.961466089 1.021543906 0.97500439 0.96345514 1.071193351 1.064488469 1.031149475 0.978914569 0.940452064 1.073204736 1.137838235 1.034401521 1.033944048 0.903334722 0.928647915 0.925439171 0.990339942 0.933560044 157837417 pcag Chromohalobacter sp. HS2 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Chromohalobacter; 0.840253485 0.808232749 0.802292439 0.782126869 0.829172623 361064211 cysI Niastella koreensis GR20-10 Sulfur Other NA superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;genus:Niastella;species:Niastella koreensis; 0.817154415 0.827151599 0.873789476 0.890441865 0.847191883 0.814343229 0.867070048 0.840528184 0.869492158 0.888527949 0.859376055 0.889331641 0.800228257 0.83253062 0.833686444 0.841375301 0.834056359 260621491 heparinase Bacteroides finegoldii DSM 17565 Carbon Cycling Carbon degradation Heparin superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides finegoldii; 0.967300821 1.008010683 0.996859417 1.004800382 0.994498098 0.991766747 0.988045251 0.997348504 0.959596832 0.978300055 0.982034337 0.966388744 0.973137913 0.970511675 0.940234779 0.949928384 0.967038567 1.010234046 345004945 dehh109 halophilic archaeon DL31 Organic Remediation Chlorinated solvents NA superkingdom:Archaea; 1.019539884 1.012312211 1.01051372 1.044894775 1.008857995 1.023794988 0.940868238 1.030992618 1.004704278 1.02191381 0.972011987 0.993996809 1.008791992 1.018364006 0.968114384 0.963211158 1.02929622 1.032444834 339511416 chitinase Salmonella bongori NCTC 12419 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella bongori; 0.882371018 0.895693594 0.879304492 0.883685923 0.900843486 0.878127582 0.901445066 0.929163909 0.912745092 0.882855698 0.955600145 0.920940711 0.89240366 0.891393054 0.876649421 0.931919056 0.893418148 0.86835272 10580386 endochitinase Halobacterium sp. NRC-1 Carbon Cycling Carbon degradation Chitin superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halobacterium;species:Halobacterium salinarum; 0.946727475 0.936833611 0.992065982 0.967091129 0.985472771 0.990366395 0.923528228 0.895808672 0.966374111 1.022392073 0.985981529 0.988482341 0.995021074 0.984201405 0.981159164 0.985299649 0.988012812 0.956959165 345864430 FBP_aldolase endosymbiont of Tevnia jerichonana (vent Tica) Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;species:endosymbiont of Tevnia jerichonana; 0.957951206 1.114299643 1.008112217 0.885812536 0.901889579 0.965851362 0.896025499 1.040547205 0.984615517 0.927714576 0.952839072 0.993702478 0.892560956 0.97504197 0.891466294 0.948156758 0.942304441 0.990028874 93356795 cmci Cupriavidus metallidurans CH34 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 0.868497974 0.874794458 0.842388563 0.845569125 0.792415123 0.857816569 0.810638124 0.829414007 0.823326714 0.875287333 0.817675773 0.777968391 0.815791403 0.817719981 0.845643057 26278800 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.031064603 0.995240883 1.036911257 1.047879263 0.937933352 0.987506315 0.930873379 0.991729416 1.032726077 0.981988443 0.975454452 0.997067262 0.955148209 0.949925799 0.920218231 0.958051462 1.042850706 0.997574143 388006822 dehh Pseudomonas synxantha BG33R Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas synxantha; 0.824792097 0.853571063 1.177009804 0.81385875 0.825060794 0.842640085 0.809262225 0.840836032 0.859842335 0.836992292 0.80550912 0.839306469 0.814988667 0.819214301 0.827462222 214028805 phn Ruegeria sp. R11 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 1.13391675 1.126523788 1.117529028 1.124947224 1.107996717 1.113018396 1.109545865 1.147997749 1.117680054 1.093678506 1.134012438 1.148523387 1.098082725 1.110022499 1.124461526 1.101584953 1.118473102 1.09448696 226243761 bphF1 Rhodococcus opacus B4 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus opacus; 0.93059575 0.986926318 0.893579251 0.910874003 0.925100244 0.979748345 0.85652423 0.91381134 0.913511202 0.942726887 0.867486246 0.895933377 0.874401462 0.951979413 0.867962548 0.888676824 0.936871259 0.977249114 398870670 cara Pseudomonas sp. GM74 Organic Remediation Aromatics Heterocyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.957940796 0.862335313 0.933847094 0.96999818 0.890240704 0.905415279 0.928462032 1.0061132 0.979365249 0.898481944 0.88561671 1.032750458 0.875759097 0.854187842 0.875016296 0.868716496 0.979878058 121699582 tannase_Cdeg Aspergillus clavatus NRRL 1 Carbon Cycling Carbon degradation Tannins superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 1.065093175 1.137471579 1.121413514 1.188584492 1.106717148 1.08245589 1.145402926 1.147351472 1.119161147 1.084802871 1.05664069 1.134578645 1.094479933 1.049827578 1.131475838 1.093817283 1.148527314 1.051854682 354953554 catechol Bradyrhizobium japonicum USDA 6 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 0.870593645 0.900465779 0.898648097 0.859344101 0.869742034 0.830130727 0.879689871 0.886519868 0.828119977 0.883149304 0.846495409 0.921733837 334859559 limeh Frankia symbiont of Datisca glomerata Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 0.827385939 0.796964092 0.818918618 0.835798034 0.807151803 0.826976896 0.820753762 0.809488436 0.814328464 0.851583073 83653427 atza Burkholderia thailandensis E264 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia thailandensis; 1.093438787 1.113833072 1.03662634 0.995009266 1.086002789 1.079168315 1.076132502 1.092480521 1.052974435 1.006928864 1.183141192 1.057968788 1.061221002 1.058296235 1.047074467 1.077666373 1.060031549 1.102555499 2331053 ccmN Synechococcus sp. PCC 7002 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 0.962204389 0.896132687 0.875799792 0.925491457 0.915810726 0.855053629 0.948693884 1.072799892 1.067017418 0.806021312 0.880438541 0.959336775 0.970361361 0.972616329 0.918171985 0.875323976 343788427 cysI Rhizobium sp. LPU83 Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 1.056315652 1.070633326 1.044211729 1.08905142 1.052392649 1.07922361 1.034532079 1.024187586 1.074203597 1.057503723 1.058149392 1.055234759 1.060846036 1.089047594 1.030202071 1.046991643 1.151467757 1.036683132 151302253 APS_AprB Desulfococcus sp. DSM 8541 Sulfur adenylylsulfate reductase NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfococcus; 0.973063935 0.97601548 0.908786098 0.955537891 0.949540967 0.94949613 0.898647094 0.91271557 0.943205791 0.934218029 0.892355993 0.919014239 0.86144323 0.87032164 0.870516042 0.889355852 0.972141412 0.987066214 329573893 rgh Paraprevotella xylaniphila YIT 11841 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Paraprevotella;species:Paraprevotella xylaniphila; 1.122566759 1.096170719 1.172018101 1.157093684 1.154951907 1.13450744 1.150667304 1.131943075 1.136869405 1.144745481 1.127592094 1.143736631 1.0899557 1.142857761 1.105319649 1.094215495 1.122527024 1.118477762 261352763 ppx Verticillium albo-atrum VaMs.102 Phosphorus Polyphosphate degradation NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticillium;species:Verticillium alfalfae; 0.858980281 0.999726193 0.920639839 0.87177517 0.961458686 0.885116475 0.871469008 0.966304609 0.916154848 0.889224657 0.935228543 0.835825316 0.902653718 0.874786704 0.981541777 114307799 PRK Nitrosomonas eutropha C91 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas;species:Nitrosomonas eutropha; 1.331768922 1.312546348 1.318701011 1.349230386 1.323110307 1.303460956 1.318517665 1.358770494 1.32407029 1.292999973 1.292802493 1.349091983 1.284925405 1.248718441 1.302561304 1.281635967 1.307298907 1.278994009 51468942 phenol_oxidase uncultured Basidiomycota Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota; 0.861989775 0.79580832 0.813017479 0.779809076 0.810571335 0.811534627 0.825867128 225376385 amyA Roseburia inulinivorans DSM 16841 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Roseburia;species:Roseburia inulinivorans; 0.958884602 0.939797948 0.978582332 0.982387401 0.991823373 1.101293271 0.93471059 0.938649367 0.942041987 0.950802194 0.957145191 1.01491946 0.978855084 0.914582509 0.951364531 0.934233199 0.923242335 0.932379103 145248179 tfth Aspergillus niger Organic Remediation Aromatics Chlorinated aromatics superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 0.83175901 0.791950036 0.829261374 0.899488782 0.824515255 0.877698206 0.854570772 0.826680622 0.864570141 0.842545205 0.813462103 0.889075623 0.821883671 0.857982329 372272671 nitrilase Marinobacterium stanieri S30 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacterium;species:Marinobacterium stanieri; 1.079626755 1.103009296 1.047945774 1.137382225 1.174728517 1.114352386 1.064338731 1.068980509 1.065271727 1.108874484 1.168025055 1.12972062 1.078719552 1.05017108 1.049336506 1.092312853 1.091779425 1.073531622 363417675 tktA Acidovorax sp. NO-1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 1.175488785 1.125499345 1.081636127 1.11323054 1.09548382 1.132416086 1.071469177 1.087603672 1.120624146 1.11649478 1.105073359 1.098343953 1.093979625 1.097619489 1.06669216 1.089208109 1.140423938 1.102491601 212709122 atza Providencia alcalifaciens DSM 30120 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia alcalifaciens; 1.154144408 1.12790741 1.105170086 1.120182419 1.112975722 1.075257073 1.094207133 1.095660252 1.121854185 1.105336979 1.107421408 1.145636683 1.069240514 1.059200013 1.029166333 1.053598024 1.09927667 1.085365748 197116488 phenol_oxidase Geobacter bemidjiensis Bem Carbon Cycling Carbon degradation Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter bemidjiensis; 1.048100256 0.984431819 1.028954503 1.085509268 0.94987598 0.990730455 0.931805 0.981472441 1.016485762 0.987022189 0.97042452 0.981373925 0.960765708 0.944267034 0.975974358 0.969404112 0.993520158 0.97615721 90856158 soxY Allochromatium vinosum Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Allochromatium; 1.131225292 1.105382374 1.124400047 1.123716082 1.103972615 1.134872871 1.119706474 1.102788546 1.096610067 1.079600446 1.091425247 1.109687659 1.092830776 1.070275595 1.11791358 1.095099335 1.136436258 1.107799428 112821387 catechol Sphingomonas sp. KA1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 0.775523684 0.881999634 0.784567121 0.832465328 0.8246051 0.838505092 0.842632154 0.829859208 0.785894261 0.847885423 374608578 tehb Mycobacterium tusciae JS617 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tusciae; 1.004440375 1.019808944 1.025342877 1.017917808 1.022877427 1.036095787 1.023281926 1.004639371 1.001829122 0.999388652 0.988915589 0.989695143 0.998261306 1.004602108 0.95913517 1.031874188 1.022735506 1.019704322 254820226 cutinase Mycobacterium intracellulare ATCC 13950 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium intracellulare; 0.995536747 0.928264657 0.926759789 0.900881966 0.916513618 0.936678928 0.930665694 0.901674109 0.936031953 0.908369397 0.931412826 0.916931312 0.904717443 0.86415097 0.8514412 0.848536275 0.939742801 0.929024039 118168977 cdh Mycobacterium smegmatis str. MC2 155 Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 1.057671666 1.110770851 1.108175222 1.067764243 1.085225481 1.109622533 1.080529137 1.017203361 1.058626541 1.123163892 1.120574223 1.079028722 1.074325413 1.140596946 1.107694299 1.090049202 1.082593751 1.104722126 302540503 xylanase Streptomyces hygroscopicus ATCC 53653 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces himastatinicus; 0.754348824 0.820412883 407999808 oxdb Pseudomonas syringae pv. avellanae str. ISPaVe013 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae; 1.190476068 1.185083789 1.15815447 1.149013534 1.116898943 1.144050303 1.103307404 1.134637889 1.128325614 1.154797515 1.114198325 1.133228421 1.110937907 1.106876868 1.068497056 1.109251051 1.161774906 1.181069678 189436087 xylanase Bacteroides intestinalis DSM 17393 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides intestinalis; 0.821969914 0.782997177 0.817882331 0.851382621 0.821870516 0.86233144 0.915113514 0.856401759 0.834906302 0.831070802 0.812725581 0.833848544 0.846560363 0.861290826 0.863163973 0.816783365 359739597 vgb Saccharomonospora azurea SZMC 14600 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora azurea; 0.958263087 0.946948106 0.91063259 0.959855233 0.96905958 1.148320829 0.900281621 0.891111856 0.958338561 0.895883686 0.936143636 0.9246502 0.909754481 0.911929504 0.894943716 0.936275575 0.97206247 0.929326496 7861553 PRK Hydrogenophilus thermoluteolus Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Hydrogenophilus; 0.802261462 0.781090801 0.812820451 0.784727361 0.813415007 0.820920218 0.80560591 0.771646829 0.872341155 221722353 amyA Agrobacterium radiobacter K84 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 0.826537043 0.842742844 0.792768049 0.834345682 0.834598643 0.809457428 303257138 fthfs Burkholderiales bacterium 1_1_47 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales; 1.004001388 0.972028376 0.926148576 1.039996828 0.919275022 0.994726373 0.922829207 0.944761915 0.936831193 0.956516526 0.914935378 0.940427361 0.968794372 0.941431743 0.883118587 0.987290941 1.032702363 0.953808725 374702220 catb Pseudomonas sp. S9 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.947424484 0.910007387 0.915430133 0.942578767 0.874624664 0.901345159 0.889994142 0.930750073 0.927452963 0.934109549 0.871046623 0.90555957 0.839256419 0.863388613 0.862760493 0.893571967 0.939209787 0.889354311 227236491 amyA Anaerococcus lactolyticus ATCC 51172 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XI. Incertae Sedis;genus:Anaerococcus;species:Anaerococcus lactolyticus; 0.780995131 0.804571738 0.801442323 0.782837743 0.804769936 0.793377509 0.798736116 0.749034585 0.829830489 304309770 PRI gamma proteobacterium HdN1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 0.825996009 0.810496505 57335580 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.813248663 0.784166795 0.805924902 0.797087644 0.801747575 0.815082493 0.79731057 0.867017386 0.877414748 0.82717578 0.810197807 0.89252503 0.869113649 78093536 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.430943759 1.432422991 1.408796332 1.396798049 1.405282435 1.476944139 1.401729246 1.410019269 1.390075691 1.403069766 1.402058301 1.392581911 1.387893121 1.416454073 1.538367944 1.431580621 1.41996974 1.424409558 298291962 SoxA Starkeya novella DSM 506 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Starkeya;species:Starkeya novella; 0.942623501 0.97320368 0.955652714 0.893671941 0.84992536 0.935233562 0.860883548 0.893734614 0.905540659 0.94384393 0.858971402 0.904508961 0.840736659 0.843220984 0.842978566 0.847389617 0.931945445 0.966364532 160917617 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.830615503 0.909509942 0.816970189 0.883512398 0.816878355 0.857261728 0.862787679 0.85560956 206567312 arsc Klebsiella pneumoniae 342 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 0.904600916 0.943339116 0.908076688 0.957771721 0.921596224 0.933708149 0.92569926 0.926657741 0.906231815 0.903575074 0.941787406 0.922358325 0.893555532 0.883909847 0.841657661 0.890224306 0.906670467 0.953210558 300390299 fthfs uncultured bacterium Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria; 0.860243858 0.884490145 0.937156845 0.898292524 0.92272716 0.863795533 0.951440874 0.951754868 0.91065656 0.912466037 0.856265632 0.883542914 0.83503585 0.820687503 0.884171534 0.896630535 66801879 narg unidentified bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.826432452 0.822195666 359688602 arsc Leptospira licerasiae serovar Varillal str. MMD0835 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Leptospiraceae;genus:Leptospira;species:Leptospira licerasiae; 0.77456308 0.826945713 0.823497596 0.870942071 0.796397872 0.8169518 0.842794131 0.879307309 0.840359253 0.847539857 0.892731956 0.827047535 0.80787736 0.831787583 0.793853967 219860575 mannanase Arthrobacter chlorophenolicus A6 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 1.054968994 1.067105943 1.024007506 1.055301391 1.019120485 1.020325827 1.02732389 1.031026779 1.056991853 1.030790295 1.031157844 1.056248577 1.007720401 0.99804327 0.999287955 1.004300553 1.05026001 1.052549485 255930971 Dyp Penicillium chrysogenum Wisconsin 54-1255 Organic Remediation halogenated compounds NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 1.231610529 1.240313657 1.20592918 1.233465013 1.237502097 1.229251829 1.236352082 1.210289841 1.215232068 1.234600632 1.253479435 1.244939319 1.189397878 1.180758205 1.167796777 1.205238096 1.219665102 1.229775527 120590559 endochitinase Acidovorax avenae subsp. citrulli AAC00-1 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax citrulli; 0.898716006 0.908073153 0.844100209 0.935683982 0.842172642 0.896592348 0.858593682 0.935528129 0.912100542 0.916829202 0.879403776 0.874616925 0.821426256 0.87429119 0.829480845 0.871676409 0.898260025 0.94901681 193224926 SoxB Cupriavidus taiwanensis LMG 19424 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus taiwanensis; 1.271268915 1.293516791 1.282406473 1.259061391 1.260632098 1.300677006 1.249778879 1.250746482 1.282329901 1.296675953 1.252341876 1.261380659 1.230240483 1.245563453 1.216190272 1.24014582 1.244043863 1.262344868 392530619 amyA Carnobacterium maltaromaticum ATCC 35586 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Carnobacteriaceae;genus:Carnobacterium;species:Carnobacterium maltaromaticum; 0.955272574 1.031744501 0.956653595 0.998352127 1.000796093 0.949287917 0.981142803 0.935983186 0.993020871 0.997526665 0.991790467 0.993062403 0.966173689 0.927967883 0.9785012 0.944616926 0.94256451 0.973376132 359307894 ara Arthrobacter globiformis NBRC 12137 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter globiformis; 1.111465889 1.10764901 1.107104822 1.122359786 1.114818997 1.150688746 1.079761228 1.098439324 1.100806099 1.102062181 1.115107417 1.141276881 1.065957241 1.067936855 1.065712421 1.097239556 1.105236285 1.079037104 93352999 dehh Cupriavidus metallidurans CH34 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 1.100623354 1.157590765 1.132319754 1.155143327 1.144018632 1.167893263 1.153615082 1.151992258 1.156683418 1.18054852 1.173261551 1.142582662 1.110832294 1.104902806 1.084164242 1.108504339 1.160822815 1.154977113 333937531 urec Novosphingobium sp. PP1Y Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 1.225871145 1.168099765 1.190017151 1.194586397 1.142657254 1.188598515 1.149917038 1.182689253 1.171313576 1.157966765 1.145956483 1.174394914 1.14751202 1.154288783 1.144713575 1.204499879 1.174915072 1.156207659 13346881 mannanase Sorangium cellulosum Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium; 0.783027707 0.822732831 170939361 dehh109 Podospora anserina S mat+ Organic Remediation Chlorinated solvents NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Lasiosphaeriaceae;genus:Podospora;species:Podospora anserina; 0.875588782 0.83965663 116749742 nitrilase Syntrophobacter fumaroxidans MPOB Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophobacteraceae;genus:Syntrophobacter;species:Syntrophobacter fumaroxidans; 1.188936284 1.175429205 1.137525403 1.179795225 1.135632574 1.141034195 1.078840945 1.126081519 1.19157763 1.15216728 1.139204701 1.124182656 1.149291109 1.143419788 1.070912861 1.100140244 1.181845671 1.187682028 326197654 alkb Gordonia neofelifaecis NRRL B-59395 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia neofelifaecis; 0.90277724 0.912876543 0.902404375 0.923159238 0.874825039 0.905020079 0.840755858 0.906379786 0.888532205 0.887466425 0.863095079 0.879878178 0.85211962 0.824736415 0.865279292 0.8622276 0.916548055 0.904483711 350567731 amyA Propionibacterium avidum ATCC 25577 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium;species:Propionibacterium avidum; 0.811177178 0.794850874 0.798015891 223936929 xylanase bacterium Ellin514 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobia subdivision 3;genus:Pedosphaera;species:Pedosphaera parvula; 0.786581894 0.857247937 0.835065748 0.8384783 0.820473875 0.821652916 0.827660923 0.876110271 335441248 ara Halorhabdus tiamatea SARL4B Carbon Cycling Carbon degradation Hemicellulose superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halorhabdus;species:Halorhabdus tiamatea; 0.821445675 0.946114271 0.890855752 0.909991254 0.906822605 0.923619135 0.825004706 0.847795052 0.825753058 0.906933581 0.845381599 0.879513999 0.837869913 0.874046577 0.822956807 0.875947344 0.897416097 0.932078596 121701041 cellobiase Aspergillus clavatus NRRL 1 Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 1.222058274 1.2054256 1.247418077 1.261457713 1.239845895 1.245406101 1.258068888 1.273217917 1.243075041 1.239128826 1.236579073 1.260978474 1.218583807 1.205616745 1.255032488 1.219217409 1.278768661 1.190883124 158336016 FBPase Acaryochloris marina MBIC11017 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Acaryochloris;species:Acaryochloris marina; 1.141097569 1.219492515 1.130291589 1.17305097 1.176871892 1.172475569 1.158527429 1.151935935 1.15542835 1.165078764 1.146856519 1.183583769 1.164669225 1.142700378 1.118497335 1.142044374 1.146880727 1.146804579 356697066 amyA Clostridium hathewayi WAL-18680 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hathewayi; 1.062324313 1.090740382 1.047963497 1.041934509 1.009314419 1.019092775 1.00225699 1.015211302 1.021182348 1.027341164 0.983848388 1.024699874 0.974617728 1.005998472 0.984475056 0.98558057 1.026005016 1.011799323 126470054 bphc Rhodococcus rhodochrous Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 1.264270129 1.229824374 1.228325362 1.260775878 1.243286736 1.277943547 1.230182896 1.256880838 1.271915518 1.241175279 1.236280341 1.268342443 1.211899565 1.209432963 1.189934799 1.225481707 1.242685695 1.245592013 157804739 aps_apra Thiocystis violascens Sulfur adenylylsulfate reductase NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiocystis; 0.898903157 0.846519877 0.860896098 0.926678485 0.866464285 0.877795219 0.899879606 0.873019288 0.902455202 0.90867477 0.899205907 0.912229372 0.799894798 0.906346607 0.795847149 0.816008056 0.837358534 0.85443597 23867874 nifh unidentified nitrogen-fixing bacteria Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.806444524 0.837882684 0.799091846 0.765189655 0.820487789 0.807439778 0.799172287 0.819929011 168703992 amyA Gemmata obscuriglobus UQM 2246 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Gemmata;species:Gemmata obscuriglobus; 0.815151943 0.824519369 0.835663209 0.898156452 0.844218484 0.879469076 0.83184865 0.818750351 0.881314859 0.876027419 0.852669002 0.799464232 0.793836905 0.817609898 0.791481518 0.925802058 0.949807104 383791645 amyA Spirochaeta africana DSM 8902 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Spirochaeta;species:Spirochaeta africana; 1.164793928 1.059634081 1.002391177 1.027491852 1.019412462 0.989853518 1.000032719 1.080988836 1.075795561 1.030851036 1.040456571 1.071419776 0.989826115 0.994542261 0.893619125 0.965876722 1.094789301 0.99694148 226715429 phn Laribacter hongkongensis HLHK9 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Laribacter;species:Laribacter hongkongensis; 0.922390372 0.933191581 0.901897416 0.938598652 0.896862866 0.904885436 0.858184175 0.922575909 0.914104781 0.93199176 0.902301528 0.909541305 0.876308235 0.886209008 0.849226069 0.846608907 0.914191551 0.923357458 398347799 b_lactamase Leptospira broomii str. 5399 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Leptospiraceae;genus:Leptospira;species:Leptospira broomii; 0.846765852 0.899058234 0.860597756 0.88824349 0.893943094 0.861902853 0.862313553 0.828528393 0.838671338 0.846624836 0.908464822 0.902219434 0.84893674 0.87781492 0.893819899 0.884890569 0.878741333 0.911114353 156708224 alkb uncultured bacterium Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria; 0.898438692 0.873909443 0.842465974 0.876166118 0.858065443 0.858770726 0.813983867 0.892272164 0.801298083 187936462 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.807613856 0.803648448 0.815046809 0.815597471 0.817417366 0.78509767 147847969 terc Synechococcus sp. WH 7803 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 0.88837271 0.795348188 0.877257542 0.936577029 0.88732794 0.853366954 0.902821564 0.927527422 0.911189322 0.881133762 0.882071895 0.906010989 0.835369862 0.789011816 0.82258808 0.81221388 0.912446557 0.84825892 334131547 FBPase Methyloversatilis universalis FAM5 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Methyloversatilis;species:Methyloversatilis universalis; 0.913478265 0.903827815 0.880763247 0.871636692 0.870913215 0.888151582 0.850338378 0.83830439 0.886575976 0.880904974 0.815753685 0.840010376 0.837703956 0.89535746 0.813354289 0.869909473 0.871018309 0.925885042 334696048 ppx Corynebacterium ulcerans 809 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium ulcerans; 0.923103296 0.873188262 0.911979875 0.914741694 0.920951475 0.918905755 0.903688758 0.946538064 0.939503049 0.960445569 0.869303765 0.912983406 0.929837509 0.931826962 0.799601232 0.902254668 0.930568326 0.91178 197322304 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.765785461 0.81709843 352962570 rubisco uncultured bacterium Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria; 1.169592897 1.144607036 1.0955785 1.17356425 1.142526756 1.159492919 1.095881609 1.15724946 1.13542545 1.122783724 1.161465873 1.154921371 1.068882671 1.140542228 1.209664902 1.112015189 1.164972908 1.128163801 76056967 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.921673228 0.889489198 0.910416021 0.897606616 0.901275657 0.86921026 0.914145695 0.915310962 0.906421442 0.90000276 0.90739324 0.898201851 0.892012873 0.824200247 0.869321638 0.867535124 0.902803659 0.904820617 383780036 terc Actinoplanes missouriensis 431 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes;species:Actinoplanes missouriensis; 0.954898831 0.965341074 0.9275474 0.986205789 0.918653012 0.905371334 0.91092537 0.944195467 0.978461639 0.954538373 0.850622431 0.963565309 0.857460238 0.88446643 0.822868868 0.880764438 0.984675023 0.98887937 296849733 amyA Meiothermus silvanus DSM 9946 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Meiothermus;species:Meiothermus silvanus; 0.785996471 0.821942889 0.822625297 0.867377755 0.830921384 0.813820062 0.789336387 0.849548113 0.809497479 0.836419955 326696731 tktA Acetobacter pomorum DM001 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acetobacter;species:Acetobacter pomorum; 0.893716569 0.915888271 0.915102019 0.954450989 0.887841942 0.890552543 0.883461775 0.874876507 0.921945744 0.860206269 0.861087071 0.883013939 0.853689944 0.809472074 0.825297581 0.829185201 0.92353551 0.94376819 302038994 fthfs Candidatus Nitrospira defluvii Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Nitrospirae;class:Nitrospira;order:Nitrospirales;family:Nitrospiraceae;genus:Nitrospira; 0.814860911 0.79232107 0.840445872 0.782499227 0.825818373 0.810129606 322433847 amyA Granulicella tundricola MP5ACTX9 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Granulicella;species:Granulicella tundricola; 1.138660753 1.125205801 1.094272236 1.15021352 1.101093044 1.141057498 1.08460184 1.131429275 1.104500603 1.099135194 1.108969686 1.114669268 1.088320236 1.095743741 1.050244573 1.092812653 1.134840504 1.121580169 126718810 nhh Roseobacter sp. SK209-2-6 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 0.849839765 0.814232432 0.853408104 0.835888963 0.878623999 0.833133274 0.881836957 0.806331613 0.801941122 0.811904985 0.853000494 380692170 mcra Methanolobus profundi Carbon Cycling Methane Methanogenesis superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosarcinaceae;genus:Methanolobus; 0.901482421 0.897457043 0.931961944 0.882532167 0.882822836 0.92902507 0.84069694 0.862603318 0.890184636 0.86576478 0.873869685 0.892500274 0.856149454 0.856867626 0.826464823 0.839380868 0.933299945 0.860390457 2967835 endopolygalacturonase_fungi Ophiostoma novo-ulmi Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Ophiostomatales;family:Ophiostomataceae;genus:Ophiostoma; 0.857380506 0.896183393 0.833897449 0.858436308 0.831473976 0.854844491 0.868864469 0.866255114 0.828860186 0.889812714 0.81917706 0.838486199 0.827520806 0.829775938 0.873999263 0.82709518 0.888358861 0.907628234 260432808 napa Silicibacter lacuscaerulensis ITI-1157 Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria lacuscaerulensis; 0.981612883 0.965801719 0.903165742 0.965397662 0.960036592 0.912202291 0.906508856 0.880193534 0.971638751 0.940316074 0.899433476 0.900998295 0.857858336 0.98385148 1.00859037 77954443 amie Marinobacter aquaeolei VT8 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter hydrocarbonoclasticus; 1.447121091 1.385592354 1.396681486 1.396502513 1.358167311 1.450540274 1.355178177 1.37668475 1.375105568 1.377509543 1.370834017 1.352697591 1.351162666 1.38054266 1.340255027 1.381749083 1.438362454 1.391529348 146341448 aln Bradyrhizobium sp. ORS 278 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 1.014819834 0.972651812 1.017387921 1.010683691 1.019046441 0.991352655 0.961452928 0.942456963 0.994288031 0.912818217 0.930918213 0.97219756 0.977954145 0.8944732 0.965047761 0.987281559 1.028663717 0.987710413 393766138 exaa(moxf) Methylobacterium sp. GXF4 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 1.161568801 1.143137575 1.127195159 1.159376621 1.076403989 1.126162064 1.078672235 1.110316887 1.096518067 1.118233607 1.114458548 1.124803907 1.094895771 1.108626112 1.073735056 1.118328867 1.16119282 1.124701764 383781558 amyA Actinoplanes missouriensis 431 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes;species:Actinoplanes missouriensis; 1.202417969 1.167021811 1.137034081 1.182404179 1.115834548 1.165216577 1.138264227 1.167718379 1.170936779 1.168480512 1.124525403 1.155712092 1.098258288 1.136152059 1.098165705 1.107448409 1.195977925 1.166906858 325109940 tehb Planctomyces brasiliensis DSM 5305 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Planctomyces;species:Planctomyces brasiliensis; 0.90920147 0.909104776 0.89403589 0.948729888 0.921467786 0.934689845 0.91224536 0.888457536 0.923265368 0.914492678 0.893101329 0.923180851 0.895969957 0.859763929 0.87351927 0.92214459 0.935321971 0.908203658 212529588 nitrilase Penicillium marneffei ATCC 18224 Organic Remediation Aromatics Other aromatics superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 0.947168356 0.853450482 0.887307218 0.797778634 0.866080959 0.830040361 0.868983345 0.879316199 0.907330642 0.908438526 0.811699699 0.805635043 0.847419908 0.856721396 160864145 CsoS1_CcmK "Salmonella enterica subsp. arizonae serovar 62:z4,z23:--" Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 1.141099447 1.123331012 1.102419996 1.096643087 1.089894994 1.113286586 1.076101687 1.097945697 1.096745943 1.104950699 1.103444751 1.091347604 1.065287573 1.079164578 1.043396799 1.077210215 1.1119405 1.119602453 197782333 hbh Streptomyces sviceus ATCC 29083 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 0.796575913 0.815903321 0.810198249 0.801281858 0.782160745 0.787421954 0.793729387 0.797229654 0.811181616 0.79755612 0.83786456 158514512 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.983681367 0.901809947 0.93503225 0.992021118 0.969013694 0.945029561 0.948701785 0.938534006 0.942422783 0.898718923 0.927242583 0.96416681 0.872383806 0.823162761 0.838713654 0.895554569 0.93240609 0.934350756 343523406 amyA Actinomyces sp. oral taxon 175 str. F0384 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 175; 1.257971238 1.241064575 1.221886498 1.257335881 1.218492505 1.221409786 1.209726187 1.233457345 1.268068644 1.199556554 1.202643409 1.23702617 1.206121922 1.184114251 1.197861753 1.208722946 1.21481728 1.216367629 291440333 amyA Streptomyces ghanaensis ATCC 14672 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces ghanaensis; 0.96657148 1.002742176 0.877025506 0.94294065 0.927585135 0.932972318 0.934397875 0.910029031 0.977324761 0.949065443 0.887753314 0.963549041 0.92188116 0.861284211 0.846822575 0.909844865 0.941029902 0.959668779 34496717 ppx Chromobacterium violaceum ATCC 12472 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Chromobacterium;species:Chromobacterium violaceum; 0.858606652 0.855280813 0.822146944 0.889705863 0.837270625 0.846228529 0.866266901 0.846176701 0.841466772 0.811322021 0.88076506 0.865024523 220935937 PRI Thioalkalivibrio sulfidophilus HL-EbGr7 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio;species:Thioalkalivibrio sulfidophilus; 0.875764915 0.923492539 0.927854263 0.909640245 0.87669381 0.90091122 0.912051871 0.894201883 0.908488538 0.931544686 0.901561888 0.901865783 0.839511373 0.837154366 0.90407226 0.884070819 270210968 alkb uncultured bacterium Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria; 0.974256766 0.966102914 0.973621849 0.971731703 0.983228704 0.957796835 0.897673839 0.880050022 0.961809866 0.930132164 0.94675365 0.927016868 0.959741587 0.893508213 0.925264084 0.932523426 1.007833264 0.953940293 356641485 adhC Pyrobaculum sp. 1860 Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum; 0.80894608 0.793637889 0.811432864 0.79701703 144905877 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.071725826 0.831222684 0.85279509 0.835028869 0.903775635 0.856683729 0.905159685 0.888055575 0.892478991 0.834499271 0.870512543 0.830453705 0.836566531 0.842443271 299767094 mnp uncultured fungus Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi; 0.986457377 0.919485304 0.953764384 0.989250187 0.963294361 0.889923649 0.875706292 0.922717034 0.981934862 0.907451503 0.939951737 0.968259873 0.880944111 0.884848186 0.899743248 0.981122748 0.901497972 353211455 PRK Hyphomicrobium denitrificans 1NES1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium;species:Hyphomicrobium denitrificans; 0.856361196 0.825865283 0.860912032 0.852518963 0.835820552 0.812564881 0.810457028 0.797575903 0.882177498 0.881329945 44829089 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.935697843 0.891474508 0.955904683 0.960975251 0.9943122 0.940218546 0.950254579 0.949733885 0.929665096 0.898960932 0.933355334 0.92713329 0.889486116 0.869776569 0.882462701 0.914643433 0.952193862 0.913512373 171465226 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.981880285 0.853229284 1.010864792 0.930948776 0.977380115 0.925965286 0.829656157 0.950263419 0.965149597 0.898248436 0.980224616 1.021868099 0.960403423 0.942484101 1.014995938 0.989849941 1.019233038 1.01445897 363993506 badh Mycobacterium massiliense CCUG 48898 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium abscessus; 1.038434151 1.019172387 0.986762902 1.060542304 1.021930573 1.068455811 1.031583559 1.03236397 1.140527366 1.013233519 1.05824088 1.064115316 1.022312781 0.992062186 1.002550825 1.037729997 1.076542269 1.008982462 261371546 pme Fibrobacter succinogenes subsp. succinogenes S85 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Fibrobacteres;class:Fibrobacteria;order:Fibrobacterales;family:Fibrobacteraceae;genus:Fibrobacter;species:Fibrobacter succinogenes; 0.779655796 0.786309063 0.797539772 0.84835649 0.781368421 0.806413168 0.785640613 0.80124469 0.815192652 0.825791738 385738364 amyA Bradyrhizobium sp. WSM1253 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.984120557 1.001867336 0.966094566 0.979517321 0.983033388 0.952311994 0.942823493 0.927821287 0.96673159 0.963304646 0.983394877 0.93876985 0.886517058 0.920097502 0.950833775 0.898193368 0.990717596 0.99608222 163792345 tfda alpha proteobacterium BAL199 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 1.342107356 1.378270533 1.320868829 1.357536444 1.310926416 1.391538826 1.299455795 1.306721672 1.289266169 1.305589831 1.294613559 1.308181244 1.3052767 1.290096804 1.29757887 1.33693437 1.356563993 1.323500154 297625688 fthfs Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium;species:Propionibacterium freudenreichii; 1.11557815 1.093551405 1.115814134 1.155663712 1.123302837 1.118669006 1.150921088 1.147804652 1.128732691 1.126696561 1.135870773 1.141678229 1.097473615 1.091489047 1.088831696 1.09286338 1.133639231 1.127530877 380447917 amoa uncultured crenarchaeote Nitrogen Nitrification NA superkingdom:Archaea;phylum:Crenarchaeota; 1.190484014 1.179583005 1.20786694 1.194923907 1.168662523 1.20165389 1.159932559 1.170891808 1.230622026 1.214276423 1.183787119 1.215012453 1.151681242 1.155830269 1.15324566 1.152904664 1.225211409 1.196995921 29466066 norb uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.026492125 1.160147975 1.020060381 1.029446683 1.003731429 1.006126517 0.983997415 1.009873597 0.948565388 0.928286951 0.994395498 0.956281156 0.956548306 0.927244976 0.973247832 0.954645787 0.975574768 0.968711414 149202445 ppx Roseovarius sp. TM1035 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 0.813226753 0.877054835 0.828984214 0.889121239 0.864061005 0.837687934 0.837762755 0.797625548 0.81038017 0.859579895 0.831374902 0.837577714 0.835967201 0.842615389 0.88641915 365855756 TIM Acetobacteraceae bacterium AT-5844 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae; 0.819199659 0.861714389 0.836550259 0.831187285 0.853312161 0.84220676 339018108 tktA Acetobacter tropicalis NBRC 101654 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acetobacter;species:Acetobacter tropicalis; 0.806543881 0.79506729 0.793889771 0.834890529 0.802908707 0.795441441 0.793289684 0.837757087 0.797326583 0.822038587 226362830 bphF1 Rhodococcus opacus B4 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus opacus; 1.043566112 1.034207836 1.014711375 1.041216834 1.016590522 1.018500662 1.009174133 1.036963878 1.019917199 1.012722246 0.97703925 1.050530182 0.951417518 0.995644307 0.937253869 0.963362941 1.035916317 1.053149208 330937084 tktA Pseudomonas syringae pv. pisi str. 1704B Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae; 1.005005854 1.030885427 0.982666338 1.024203477 0.986878405 1.015473434 0.966726745 0.980240889 1.000913844 0.996032069 0.97305505 1.014991446 0.976224606 0.946090355 0.980958282 0.975082841 1.020798914 1.049437251 212538609 cellobiase Penicillium marneffei ATCC 18224 Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 0.874698655 0.81827905 0.905124701 0.889440481 0.885076324 0.850566148 0.898145272 0.883417852 0.865376578 0.929417763 0.886220466 0.868252316 0.865063524 0.831586193 0.861237064 0.860132011 0.836931639 227832119 ppx Corynebacterium aurimucosum ATCC 700975 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium aurimucosum; 1.147363905 1.11277219 1.131780146 1.16706515 1.134417914 1.150091691 1.113110361 1.130896021 1.139744009 1.098518033 1.085416989 1.124354969 1.107088129 1.055568663 1.069362571 1.111020366 1.158819078 1.131718505 88785152 nosz Robiginitalea biformata HTCC2501 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Robiginitalea;species:Robiginitalea biformata; 1.249855076 1.179096108 1.219602355 1.194120553 1.1988461 0.965609715 1.154853026 1.100322631 1.218595059 1.226504854 1.201650478 1.221784606 1.180039883 1.118018533 1.147877028 1.037129368 1.194625783 1.190705054 55229573 tehb Haloarcula marismortui ATCC 43049 Metal Homeostasis Tellurium Detoxification superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloarcula;species:Haloarcula marismortui; 0.782429608 0.864599361 0.844467314 0.869185027 0.839991752 0.795528838 0.894208696 0.910403385 0.981694237 0.815692519 328808954 endoglucanase Verrucosispora maris AB-18-032 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Verrucosispora;species:Verrucosispora maris; 0.932812539 0.906316627 0.951378821 0.93014638 0.822007012 0.873307257 0.870411199 0.900702419 0.937686155 0.891555277 0.893490102 0.861151358 0.895853121 0.857673986 0.838095078 0.888481699 0.915827665 0.931609525 290570097 dehh Stackebrandtia nassauensis DSM 44728 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Glycomycetaceae;genus:Stackebrandtia;species:Stackebrandtia nassauensis; 0.899038872 0.872186513 0.910690658 0.868172485 0.842628007 0.797962737 0.866924344 0.895037938 0.819973827 0.854153354 0.831320413 0.841333215 0.876206249 0.909505054 307719157 ara Spirochaeta thermophila DSM 6192 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Spirochaeta;species:Spirochaeta thermophila; 0.945590131 0.99181494 0.85891427 0.920978488 0.962468226 1.021862379 0.956781368 0.901638622 0.933753433 1.01394093 0.951167484 0.908445909 0.959959173 1.00776487 0.901353673 1.000933119 0.97762173 116334542 ccmL Lactobacillus brevis ATCC 367 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus brevis; 0.955617928 0.977156749 0.971392526 0.961513876 0.979790899 1.032487942 0.940504807 0.90903772 0.945437369 1.001073693 0.890722498 0.948082954 0.971908662 0.947480276 0.986757286 0.966138962 0.992876479 0.976638718 119472458 arylest Alteromonadales bacterium TW-7 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales; 0.856883234 0.799136019 0.851895508 0.860478442 0.808325224 0.817419705 0.806446945 0.854651876 0.814260722 0.861489512 0.814855856 383463913 atzd Saccharomonospora xinjiangensis XJ-54 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora xinjiangensis; 0.86090794 0.807392756 0.854464758 0.825359716 0.813988217 0.822479657 0.848105474 0.814108441 0.886366304 0.802825067 0.831195475 0.86376647 377816190 cysI Pantoea stewartii subsp. stewartii DC283 Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea;species:Pantoea stewartii; 0.868708268 0.906260499 0.899265832 0.939750198 0.910361792 0.876134358 0.925835699 0.90720673 0.931846814 0.856410744 0.890453688 0.895863609 0.860805185 0.86391782 0.84276127 0.830509518 0.904202553 0.932671135 261405524 xylanase Paenibacillus sp. Y412MC10 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 1.018628173 0.955741486 0.934304785 0.913133531 0.90587545 0.950079031 0.903525588 0.925021364 1.016997331 0.918036253 0.918010134 0.92828654 0.874318794 0.917619044 0.903080925 0.900396391 0.943265935 0.924467087 89085506 B_lactamase_A Bacillus sp. NRRL B-14911 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 1.036864537 1.006428648 1.053454003 1.081189929 1.055218781 1.047347024 1.040303839 1.05738968 1.07263901 1.049374337 1.041581933 1.081164322 1.009902011 1.018599815 1.013127005 1.011754086 1.028653909 1.030404967 383779189 amyA Actinoplanes missouriensis 431 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes;species:Actinoplanes missouriensis; 1.051806594 1.000895517 1.069253237 1.081238811 1.046873206 1.066606367 1.074222826 1.099609053 1.077897466 1.031320006 1.045427816 1.055967914 1.047784235 1.038649934 1.011441352 0.994221645 1.079694315 1.022990914 338166071 xylj Cupriavidus necator N-1 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 0.980431246 0.974305092 1.016007775 0.972568643 0.905275342 0.956557483 0.924200917 0.947103906 0.983551054 0.958073278 0.934723616 0.987919088 0.928111505 0.93302307 0.939541223 0.956957548 0.971433216 0.987420924 18558986 nirs uncultured temperate forest soil bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.753215236 0.800416626 0.803467542 0.775133324 344690068 rubisco uncultured bacterium Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria; 0.929432777 0.928775154 0.931057344 0.985246169 0.888866104 0.903872342 0.921990329 0.939151038 0.967043779 0.96340993 0.925016677 0.954158287 0.890602634 0.981909444 0.915226525 0.9154317 0.9722977 0.936558532 327380401 alginase Pseudomonas brassicacearum subsp. brassicacearum NFM421 Carbon Cycling Carbon degradation Alginate superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas brassicacearum; 0.897348642 0.896720231 0.868401967 0.925415138 0.781241347 0.837736703 0.809100764 0.875340033 0.90175031 0.873072172 0.869652301 0.868651664 0.781542816 0.798851908 0.837592495 0.871382566 0.876957969 51872779 chitinase uncultured organism Carbon Cycling Carbon degradation Chitin 0.7799852 0.852188348 0.828509187 0.856566298 0.880844328 0.801310131 0.788721213 0.86021006 162568557 aoxb uncultured bacterium Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 1.107745254 1.041479353 0.987723645 0.944434006 1.054208531 1.11326603 1.055687093 1.024879041 1.075474824 1.105278604 1.13344187 1.082624127 1.088331866 1.058323597 1.139734085 1.088617663 1.12948574 1.115532353 23015073 arsc Magnetospirillum magnetotacticum MS-1 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum magnetotacticum; 1.05928487 1.230454229 1.013145116 1.015840159 0.989229387 1.034853562 1.001192439 1.006789657 1.020258936 1.010218208 0.994820549 1.015791931 0.984462988 1.012185116 0.985864129 1.0197789 1.035859505 1.017181775 190012449 alginase Stenotrophomonas maltophilia K279a Carbon Cycling Carbon degradation Alginate superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 1.036337828 1.035287372 1.055649268 1.044560701 1.016737834 1.053536444 1.019195138 1.035336114 1.033030787 1.043983519 1.037737025 1.047507498 1.003845765 0.998374974 0.969482357 1.003008281 1.052851168 1.053111688 303294303 urec Ahrensia sp. R2A130 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ahrensia; 0.780410197 0.784785979 0.80698117 0.815556677 0.782358988 0.846983955 119355882 fccab Chlorobium phaeobacteroides DSM 266 Sulfur Sulfide Oxidation NA superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeobacteroides; 0.781901313 0.829367427 0.828524479 0.786288878 194591923 arra Ectothiorhodospira sp. PHS-1 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Ectothiorhodospira; 1.02477442 1.09040942 1.03610309 1.0180095 1.051093087 1.095790264 1.037170886 0.987246577 1.003733159 1.053296236 1.036248711 1.059844773 1.011705543 1.052433837 1.039908082 1.035644483 1.042359491 1.070636668 32307929 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.168700013 1.087856031 1.120950776 1.135876662 1.096927407 1.14485999 1.110745781 1.11550696 1.135358387 1.162956479 1.117523469 1.122676231 1.065079433 1.039147382 1.048916548 1.077752429 1.179032356 1.167318776 385208463 mdlc Burkholderia sp. Ch1-1 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 0.985017179 0.89954805 0.964630936 1.002232985 0.939177203 0.941869309 0.974545432 0.970967456 0.985594288 0.934203477 0.891117117 0.944993724 0.899282962 0.86674086 0.881560036 0.923529478 0.98343587 0.952728228 110825675 pcpe Rhodococcus sp. RHA1 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 1.335125564 1.320598139 1.320202312 1.31187239 1.293927883 1.366929872 1.303625504 1.320140661 1.309205626 1.326311878 1.303550117 1.295714218 1.288369793 1.308037994 1.250297798 1.273991068 1.343709397 1.305966688 780727 nifh unidentified marine eubacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.922633132 0.888161632 0.815784969 0.920834498 0.880154626 0.857256201 0.845733258 1.023548511 1.008747992 0.803899128 0.856788982 0.84708931 0.940257432 0.918254403 0.894225453 0.85305997 87080641 amyA Arthrobacter globiformis Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 0.850462785 0.946873674 0.832125277 0.853334949 0.85876981 0.882643715 0.868104275 0.839643477 0.848376509 0.888316263 0.851356647 0.891687609 0.883664244 0.855279964 0.865104905 0.870204319 0.794916088 0.867713575 332173334 beta_agarase Glaciecola sp. 4H-3-7+YE-5 Carbon Cycling Carbon degradation Agar superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Glaciecola; 1.065735493 0.983750142 1.017757897 1.114354122 1.091631241 1.067959766 1.081391676 1.120626772 1.149162707 1.008866221 1.00556909 1.022846487 1.034677361 0.99938364 1.064713981 1.102433758 1.089976714 1.104315865 289711748 amyA Mycobacterium tuberculosis GM 1503 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tuberculosis; 1.076318874 1.101993174 1.103456904 1.115964225 1.104019962 1.100288945 1.080203339 1.077864665 1.102414289 1.060102362 1.070945132 1.09331443 1.081476757 1.048551856 1.084691097 1.056237512 1.112440912 1.076136216 114326976 pgk Granulibacter bethesdensis CGDNIH1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Granulibacter;species:Granulibacter bethesdensis; 0.852877183 0.810232003 0.851076573 0.81846105 0.929795485 0.869969932 0.906065508 0.893478884 0.831075813 0.857730559 0.99499525 0.97445348 0.801363371 0.833519108 119671055 arsc Azoarcus sp. BH72 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 1.177969298 1.15988045 1.165023982 1.181992178 1.106940699 1.144593207 1.101376129 1.165047864 1.176390033 1.125015822 1.13632355 1.167986919 1.095054527 1.108112968 1.073168836 1.117573103 1.184309536 1.129117833 258655172 dehh Nakamurella multipartita DSM 44233 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nakamurellaceae;genus:Nakamurella;species:Nakamurella multipartita; 1.086126629 1.062247378 0.98916919 1.02543646 1.034184418 1.010355162 1.006258049 1.036657541 1.02649016 1.009805962 0.997635365 1.043886491 0.926864267 0.923812058 0.926882982 0.975486555 1.07883534 0.950681431 311069376 xylanase Bacillus atrophaeus 1942 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus atrophaeus; 1.109311387 1.076410368 1.024399255 1.069047112 1.027672063 0.994048977 1.006123327 1.054889624 1.082394638 0.979478721 0.968644351 1.055503415 0.973222787 0.979340806 0.932623338 0.938261596 1.042954089 1.059681494 299135377 nosz Afipia sp. 1NLS2 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Afipia; 1.007017543 0.969323777 0.99887106 1.041753572 1.025597723 0.992977458 1.025554304 1.05928271 1.031751802 1.012942463 0.990705135 1.000325824 1.001760306 0.943401484 0.917828162 0.974241326 1.01468381 1.0252218 87300826 amyA Synechococcus sp. WH 5701 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 0.861873715 0.861508357 0.876418741 0.865727555 0.855002657 0.845943165 0.844503371 0.855070192 0.846505052 0.888977322 0.837207691 0.876398282 0.883309226 0.834250882 0.820636284 0.84772184 189496860 frdA_rTCA Chlorobium phaeobacteroides BS1 Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeobacteroides; 0.871322139 0.925921812 0.942512425 0.845463186 0.855359429 0.879597604 0.862347847 0.85820928 0.804611239 0.826821872 0.885156424 0.813038313 0.895846408 0.852726768 383338218 terc Mycobacterium xenopi RIVM700367 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium xenopi; 0.981210077 0.970726129 0.966319294 0.999704086 1.007349236 0.976321547 1.014041556 0.991842132 0.951665857 0.967805703 0.936077087 0.925376666 0.883895288 0.879587827 0.963701709 0.930740805 0.996585051 1.024276821 326206617 vana Novosphingobium nitrogenifigens DSM 19370 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium nitrogenifigens; 0.971423888 0.951883647 0.94366848 0.93448137 0.898896869 0.948941231 0.993293579 0.957757822 0.929560815 0.93159373 0.843942388 0.880183534 0.924586405 0.902526223 0.87503633 0.874655621 0.957939622 0.973779666 87281263 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.066248497 1.053350608 1.038554424 1.027908073 1.021622608 1.052647972 1.002675119 1.022562641 1.026919951 1.025858012 1.009240848 1.041963245 1.031478606 1.009793496 1.023729356 1.042283503 1.079549441 1.021499664 152970132 dmsa Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 0.841199027 0.78484895 0.846556855 0.837184054 0.824706436 0.79070856 0.905394649 1.029217608 0.871986049 0.779254137 0.841150029 0.840466776 320530302 mer Selenomonas artemidis F0399 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas artemidis; 0.79203191 0.779123612 0.8322572 0.784609499 326413813 tktA Polymorphum gilvum SL003B-26A1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;species:Polymorphum gilvum; 1.170653969 1.158127593 1.146770719 1.17377781 1.127844478 1.145302743 1.130708591 1.157040779 1.162516151 1.130499644 1.114121786 1.130571796 1.101989582 1.082402118 1.091652929 1.11285206 1.179883028 1.138902135 295676523 arylest Burkholderia sp. CCGE1002 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 1.083103506 0.973860758 0.966884946 1.017844695 0.905827083 0.982755815 0.911193657 0.978060132 0.973115524 0.948932242 0.965809723 0.968341382 0.908568714 0.900506946 0.892823927 0.947328917 0.982663864 0.943176795 347735455 FBPase Azospirillum amazonense Y2 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum amazonense; 0.955363799 0.931638398 0.967323246 0.969122421 0.975499197 0.964111446 1.002776996 0.995090099 0.968944612 0.95688422 0.959031598 0.946484903 0.926605361 0.902133428 0.826973112 0.830522141 0.960423533 1.006816634 385654577 mcra uncultured archaeon Carbon Cycling Methane Methanogenesis superkingdom:Archaea; 0.814213093 0.823431209 0.882175691 0.857798114 0.887251764 26278866 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.199292244 1.236286738 1.191841898 1.172770474 1.192542531 1.225637435 1.182785401 1.156642311 1.191317963 1.225617538 1.214736776 1.202403513 1.15423639 1.212621521 1.133625157 1.158860538 1.194658674 1.206658387 89046717 urec Oceanicola granulosus HTCC2516 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola granulosus; 1.055937709 1.006232019 0.995079165 1.041937626 0.966093754 0.994324324 0.937792382 0.96463704 1.021158856 0.97373361 0.986478775 0.966986076 0.954753985 0.968432519 0.943849992 0.968343364 1.036368822 0.988590348 295055293 arsc Enterobacter cloacae subsp. cloacae ATCC 13047 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter cloacae; 1.364040515 1.344305825 1.298399678 1.328698701 1.283164581 1.325826243 1.278803024 1.29724648 1.287437035 1.280847991 1.286586919 1.308393642 1.276209002 1.26777227 1.25832615 1.290799997 1.33203044 1.299087687 197105712 linb Phenylobacterium zucineum HLK1 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Phenylobacterium;species:Phenylobacterium zucineum; 1.06871755 1.039128605 1.045146598 1.047141995 1.037773253 1.070215134 1.050389422 1.067684582 1.038398564 1.043908089 1.034341618 1.048855276 1.006165081 1.018251181 0.991215429 1.026865912 1.099096238 1.032069959 308750395 acetylglucosaminidase Enterobacter cloacae SCF1 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter lignolyticus; 0.810479799 0.816978827 94984863 arsc Deinococcus geothermalis DSM 11300 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus geothermalis; 0.958637283 0.93642157 0.966736705 0.964747868 0.967464937 0.931036161 0.919857298 0.952822491 0.948731905 0.92443063 0.917435461 0.935184468 0.938540235 0.900699097 0.859907565 0.949312945 0.959403143 0.958495287 162285080 tktA Hoeflea phototrophica DFL-43 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Hoeflea;species:Hoeflea phototrophica; 0.981041645 0.870651137 0.9336367 0.857721393 0.873791331 0.824902212 0.852546342 0.842196411 0.914413041 0.881057144 0.918863125 0.880898468 0.835031665 0.80991137 0.795819338 0.859897893 0.878675209 0.912492301 251776277 ben_bcla Geobacter sp. M21 virulence NA NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 0.935701221 0.97902441 0.897325274 0.9855314 0.896885494 0.906017443 0.900068146 0.912718595 0.919688543 0.922683746 0.873718132 0.890366686 0.893854523 0.947564612 0.845850373 0.917344556 0.966945913 0.957379392 118472466 tfth Mycobacterium smegmatis str. MC2 155 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 1.123648322 1.127438696 1.126283859 1.109673641 1.097138507 1.131286011 1.097223281 1.088515914 1.110112312 1.137473986 1.092153833 1.090601113 1.069545942 1.087423861 1.043784688 1.061184077 1.100120076 1.112268643 190010206 linb Stenotrophomonas maltophilia K279a Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 0.93405934 0.950034617 0.881546271 0.916685815 0.930846777 0.992373014 0.832227985 0.788552088 0.788373567 0.857331306 0.868700067 0.862540071 0.834525013 0.847847251 0.832251683 0.963773482 0.928523847 325920130 catb Xanthomonas gardneri ATCC 19865 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas gardneri; 0.78294658 0.804023507 0.832896709 0.770847207 0.811261306 0.825882625 0.762797535 0.780859812 0.82116842 72121857 pcpe Ralstonia eutropha JMP134 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 1.128177486 1.120873358 1.107980059 1.106568992 1.126426914 1.138299531 1.110720461 1.081289349 1.105803672 1.115861818 1.119724424 1.109249862 1.100930609 1.059061926 1.096665396 1.084008845 1.127446974 1.096380199 322436138 amyA Granulicella tundricola MP5ACTX9 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Granulicella;species:Granulicella tundricola; 1.026001591 0.976863211 1.064653921 1.018398284 1.016425807 1.051034308 0.972993147 1.040955231 1.040799571 0.960919137 0.979398232 1.035410571 0.973990865 0.966109489 0.941826813 1.000310037 1.078279838 0.983793998 365899024 mdlc Bradyrhizobium sp. STM 3843 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.987980579 0.939368034 0.868118093 0.856558879 0.872964049 0.829466394 0.870766739 0.814841035 0.885553479 0.851744268 0.879688972 0.834410544 0.850443666 0.888094167 0.908136004 258593148 napa Candidatus Methylomirabilis oxyfera Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria;genus:Candidatus Methylomirabilis; 0.959997596 0.979157539 0.975980745 0.957082522 0.964658756 0.965934656 0.946269453 0.967669982 0.959795837 0.993751309 0.989199549 0.977225966 0.921091521 0.919091701 0.915818486 0.917575613 0.976832268 0.987921349 14022193 nhh Mesorhizobium loti MAFF303099 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 1.16665267 1.131103207 1.108678801 1.151214376 1.054759822 1.112146676 1.065563384 1.11026245 1.128082295 1.102421448 1.112669265 1.096429778 1.030742816 1.060040483 0.999351154 1.070846165 1.133663567 1.1022429 330996010 RgaE Paraprevotella xylaniphila YIT 11841 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Paraprevotella;species:Paraprevotella xylaniphila; 0.915592432 0.986936338 0.88643436 0.914911221 0.934639181 0.959987729 0.915968721 0.861884894 0.899601355 0.916283741 0.924296541 0.918300328 0.879036368 0.915909422 0.880322007 0.910953866 0.917104726 0.941972576 395774098 badh Streptomyces acidiscabies 84-104 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces acidiscabies; 1.118886991 1.082905238 1.03873621 1.122434262 1.013816365 1.088625727 1.049338985 1.100893211 1.095187948 1.062811903 1.024666296 1.065285695 1.003472296 1.031848166 1.006850031 1.032111574 1.099690999 1.091733178 379736708 arsm Blastococcus saxobsidens DD2 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Geodermatophilaceae;genus:Blastococcus;species:Blastococcus saxobsidens; 1.117473293 1.098850605 1.091387096 1.085274549 1.053983073 1.071673766 1.046375868 1.073449191 1.087251213 1.088533249 1.051689667 1.102841459 1.072366079 1.057574071 1.048487792 1.039353852 1.090188483 1.076020403 29832818 terc Streptomyces avermitilis MA-4680 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 0.87204783 0.845648936 0.826718437 0.828523346 0.857269274 0.83891502 0.855949384 0.842777286 0.863893279 0.821959809 0.832932441 0.802027887 0.87802269 0.91012783 319414020 phenol_oxidase uncultured bacterium Carbon Cycling Carbon degradation Lignin superkingdom:Bacteria; 1.190118663 1.170853358 1.142699294 1.177001225 1.223436084 1.194355179 1.143355935 1.150857247 1.214066961 1.172702617 1.15318475 1.162317614 1.162330544 1.156202427 1.119676805 1.137074107 1.195956157 1.164911524 91977592 b_lactamase Rhodopseudomonas palustris BisB5 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 0.92474838 0.902408931 0.934575823 0.930541064 0.828547407 0.966087985 0.841677781 0.889734825 0.906294276 0.911786575 0.888048185 0.880707926 0.876062065 0.910111266 0.840940355 0.868280307 0.935593803 0.893035937 83643339 amyA Hahella chejuensis KCTC 2396 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Hahellaceae;genus:Hahella;species:Hahella chejuensis; 0.813636654 0.908824719 0.873602286 0.907427391 0.875147828 0.8802865 0.826344122 0.802675703 0.801018879 0.815317842 0.820254153 0.808221948 0.816476027 0.850118894 0.855890447 0.907398188 0.929447317 238632213 phenol_oxidase Coriolopsis gallica Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Coriolopsis; 1.205566836 1.174414629 1.180699292 1.206620803 1.146236863 1.177014948 1.152756623 1.18776336 1.179146292 1.168983758 1.147160469 1.169064568 1.118821345 1.143716299 1.143321933 1.159972074 1.185259884 1.16340201 325295319 AcnA Desulfurobacterium thermolithotrophum DSM 11699 Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Desulfurobacteriaceae;genus:Desulfurobacterium;species:Desulfurobacterium thermolithotrophum; 0.840276767 0.797472501 0.851316411 0.82297562 0.837277972 0.800451847 0.858158605 0.862003826 0.844383479 0.821218221 0.807750493 0.844788974 4704462 mult_ring_12DiOx Rhodococcus sp. NCIMB12038 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 1.510512628 1.466527283 1.438804597 1.435428049 1.445074348 1.492349845 1.439834987 1.432235758 1.429432398 1.452486996 1.465940423 1.447614053 1.413501968 1.417057258 1.407978953 1.430798966 1.449428332 1.461777824 227069613 nira uncultured archaeon Nitrogen Assimilatory N reduction NA superkingdom:Archaea; 1.067076829 1.057285479 1.075142681 1.043088697 1.055668397 1.086557973 1.053214576 1.058119582 1.051785416 1.06431091 1.065954379 1.072312467 1.051133579 1.033316511 1.004922542 1.033801848 1.086686203 1.060739594 365331237 sqr Bradyrhizobium sp. STM 3809 Sulfur Sulfide Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.806838652 0.803006195 0.813928751 0.797666695 0.857384148 283951396 alkb Conexibacter woesei DSM 14684 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Solirubrobacterales;family:Conexibacteraceae;genus:Conexibacter;species:Conexibacter woesei; 1.047574535 0.97337394 1.028389013 1.053449009 1.054554633 1.033397144 1.022204902 1.134560701 0.999562795 1.010262141 1.000368413 1.113167894 1.047137893 1.029503426 1.036762254 1.025871428 1.053144233 1.092177716 184195187 catechol Burkholderia phymatum STM815 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 0.987490319 0.98273608 0.986611958 1.001056518 0.984412612 1.004911707 0.975317475 0.967034461 0.956356 1.026355774 1.00705486 0.980144169 1.019964013 0.976657725 0.975354295 0.964435877 1.010037281 1.00231132 88780010 ppx Reinekea sp. MED297 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Reinekea;species:Reinekea blandensis; 0.7782008 0.858676415 0.804431797 0.837475315 0.812518372 0.858971767 0.815858984 0.779660575 0.861401437 0.830575178 374848605 narb Nocardia cyriacigeorgica GUH-2 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia cyriacigeorgica; 0.994729599 1.010408193 0.972256153 0.98188264 0.985357656 0.977956061 0.971026503 0.950033771 0.991659393 0.965755022 0.973978208 0.955771619 0.968369664 0.939826447 0.973941883 0.924108947 1.006604693 0.99225182 76097012 amyA uncultured soil bacterium Carbon Cycling Carbon degradation Starch superkingdom:Bacteria; 0.913607882 0.946032238 0.920544548 0.925027177 0.932450311 0.94285381 0.93187986 0.891577651 0.882316177 0.952500281 0.946251563 0.942358814 0.938798803 0.959544166 0.868810986 0.924947004 0.893086416 0.988337404 403201656 bphd Gordonia rubripertincta NBRC 101908 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia rubripertincta; 0.752876607 0.773206944 46520025 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.17035755 1.187454389 1.164286934 1.159017078 1.166869258 1.178883945 1.157462312 1.151632414 1.165200154 1.172224342 1.146490118 1.149772747 1.09010837 1.09301503 1.02300161 1.109133144 1.115403504 1.130889292 340841421 nirs uncultured denitrifying bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.192024387 1.247370081 1.153029781 1.19040064 1.187833488 1.178936319 1.148938585 1.155746134 1.167286459 1.159886468 1.191001404 1.190036874 1.155178545 1.150201831 1.180510198 1.149538837 1.170424751 1.167153434 255519427 nosz proteobacterium D185 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria; 0.944726898 0.914628755 0.895252916 0.990917142 0.906457999 0.941528916 0.90840297 0.93501119 0.970881501 0.947853997 0.923907159 0.963233538 0.905984397 0.898965546 0.889754236 0.910754464 0.967898958 0.917419055 119481743 cutinase Neosartorya fischeri NRRL 181 Carbon Cycling Carbon degradation Cutin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 0.792746686 0.788743821 0.837486294 0.816576289 0.831007251 0.853200568 0.869108539 0.814215376 0.842926248 0.830002331 0.854058298 0.858132905 111223995 terc Frankia alni ACN14a Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia;species:Frankia alni; 0.913336826 1.005964833 0.919461652 0.900926348 0.8920811 0.961438857 0.86595317 0.906622029 0.877979647 0.962564344 0.916329069 0.942933394 0.895310577 0.90920612 0.885934356 0.899347686 0.866786137 0.956230562 403659883 pcpb Mycobacterium fortuitum subsp. fortuitum DSM 46621 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium fortuitum; 0.80268613 0.869521247 0.839640224 0.807113332 0.849344301 0.811428133 0.844047385 0.81640546 0.864724597 225194052 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.043737037 1.090335353 1.010757893 1.013943529 1.026620327 1.04693933 1.046336284 1.003986266 1.015176082 1.031275418 1.02037829 1.047233696 1.028084426 1.014769181 0.991323558 0.994656618 1.020897988 1.035284391 225042210 codh Clostridium asparagiforme DSM 15981 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium asparagiforme; 0.888262516 0.883913328 0.889721698 0.891033642 0.930864909 0.888515982 0.805127623 0.908883266 0.892624826 0.852678133 0.80965672 0.855800623 0.892672062 0.837855959 0.856104783 0.912770349 0.923960393 395008235 linb Acidovorax sp. CF316 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 1.052759953 1.037068802 1.033987566 1.050790033 1.002149531 1.03312295 1.014139214 1.056314986 1.019355707 1.026160897 0.995372728 1.065385513 1.003594796 1.004896402 0.980069368 1.017512607 1.065246722 1.038129771 323364596 nifh uncultured microorganism Nitrogen Nitrogen fixation NA 0.857330576 0.826314957 0.824507484 0.852357767 0.859019468 0.809173264 0.826925412 0.785876779 0.841665378 0.806795641 0.817605005 0.834871205 0.860585551 389689798 urec Microvirga sp. WSM3557 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Microvirga; 0.89947569 0.89467399 0.879554575 0.900054777 0.92368727 0.869224897 0.874509137 0.88556868 0.88165778 0.88253467 0.893200678 0.896361159 0.806261793 0.818965475 0.818504351 0.812146914 0.92725238 0.89287289 289646913 pgk Pseudomonas syringae pv. aesculi str. 2250 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas amygdali; 1.025387483 1.04200342 1.004897522 1.074611019 1.019618502 1.032835555 1.000224503 1.043922915 1.05722162 0.989826586 1.026584041 1.033817326 0.989543464 0.964278162 0.971239412 0.996594655 1.017978633 1.024124881 62149162 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 1.052921961 1.035200467 1.118786785 1.059641412 1.072005237 1.035442549 1.047845683 1.10698034 1.064076683 1.100245853 1.08135116 1.062909205 1.026968801 0.999682077 1.033268906 1.072436726 1.043983065 1.060324104 157011616 aps_apra uncultured bacterium Sulfur adenylylsulfate reductase NA superkingdom:Bacteria; 0.90331072 1.014381088 0.897935595 1.016027844 0.971259764 1.001946089 0.914800194 0.945105831 0.947621502 0.999719902 0.94102136 0.992564474 0.957570569 0.99721295 0.970042862 0.992522038 0.974653073 0.978929636 164455422 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 1.066786293 1.097076173 1.007952502 1.059502398 1.01883567 1.005279374 0.997564892 1.051331431 1.045500368 1.027971211 1.02118813 1.009923452 0.943467293 0.982966864 0.954637782 0.958550721 1.056173853 1.08447032 256007524 CsoSCA Acidimicrobium ferrooxidans DSM 10331 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Acidimicrobiales;family:Acidimicrobiaceae;genus:Acidimicrobium;species:Acidimicrobium ferrooxidans; 1.014714378 1.004738692 0.996463737 0.978709839 0.926915903 0.981598022 0.956182329 0.998124144 0.982163818 0.996839276 0.952067823 1.013600906 0.931600655 0.951724197 0.905601982 1.0339508 1.003626634 1.027784008 316981136 nirk uncultured proteobacterium Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria; 0.883939287 0.881760456 0.845964053 0.8394744 0.876892672 0.862432423 0.862060068 0.884236654 0.877002329 0.875893675 0.850494294 0.810133913 0.860629124 0.898952816 144905863 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.783685746 0.809534769 0.863050462 0.854961742 0.80154918 0.807540239 0.796391373 0.832882698 0.867072455 0.851705016 0.800546269 323364988 nifh uncultured microorganism Nitrogen Nitrogen fixation NA 1.029845579 1.021131465 1.021032399 1.031474598 1.013933286 1.018462309 0.999869847 1.009737329 1.018423504 1.022354139 1.011417219 1.04423987 0.967396579 0.987800912 0.962810333 1.006768966 1.02145481 1.035162806 357203881 terc Paenibacillus terrae HPL-003 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus terrae; 0.906417973 0.901572069 0.946414249 0.978481219 0.923782558 0.881178889 0.936470505 0.923047705 0.927270217 0.923431643 0.959735157 0.938802174 0.907250595 0.833484806 0.892387213 0.91919412 0.909100081 0.895192679 297626897 ppx Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium;species:Propionibacterium freudenreichii; 0.827356957 0.79857109 0.83500896 0.834062269 0.815529039 0.810671934 0.831795151 0.835001308 0.8273724 0.836304065 0.825666121 113529725 phn Ralstonia eutropha H16 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 1.187767877 1.14106702 1.14834679 1.153117575 1.128804485 1.196599526 1.154239558 1.133078348 1.135897437 1.144783051 1.101821861 1.10036008 1.118561646 1.11051761 1.043073098 1.104207737 1.144748028 1.153938236 159179911 FBPase alpha proteobacterium BAL199 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 1.528586397 1.466992547 1.480279571 1.490346414 1.470934908 1.511732675 1.474762474 1.483466643 1.47859878 1.45323173 1.485073334 1.49774263 1.465799413 1.414839764 1.435117077 1.447250563 1.509772718 1.433733606 358639561 urec Azoarcus sp. KH32C Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 1.421333111 1.398440976 1.392397844 1.417142826 1.420624203 1.426719062 1.388831677 1.40129932 1.401599221 1.375087525 1.409624875 1.430333637 1.406740951 1.364588519 1.390286624 1.3905546 1.411766588 1.351473399 38373179 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.865381141 0.875526466 0.884734725 0.884998471 0.829384907 0.824917946 0.84150747 0.85565428 0.852295948 0.838786279 0.94188504 0.835693231 0.860674231 0.883678748 322396064 exaa(moxf) Methylocystis sp. ATCC 49242 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylocystaceae;genus:Methylocystis; 1.30430415 1.263436708 1.251520551 1.269970011 1.245747295 1.296518142 1.221474993 1.247355744 1.249920947 1.241853842 1.238399934 1.26635722 1.236890014 1.221911782 1.272218346 1.264049698 1.347824481 1.264860139 198251141 fthfs Octadecabacter antarcticus 307 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 0.830640241 0.82976624 0.831862495 0.867290362 0.782907501 0.814613783 0.845082279 0.844818758 0.819100867 0.850628038 0.868150975 0.850236269 32562911 bphd Bacillus sp. JF8 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 1.395936187 1.348841009 1.34282155 1.369514134 1.350268216 1.37118614 1.339954096 1.377027143 1.348472006 1.312271471 1.319129674 1.360018483 1.322339448 1.293637411 1.320124839 1.34648532 1.358274645 1.322272937 348028270 cysJ Glaciecola nitratireducens FR1064 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Glaciecola;species:Glaciecola nitratireducens; 1.256952922 1.231395316 1.23227098 1.271732893 1.201425327 1.254424906 1.205096551 1.235263083 1.210867052 1.224678169 1.21548464 1.2087554 1.20051841 1.204667102 1.199520872 1.208591152 1.267160361 1.22919097 196477505 norb Phenylobacterium zucineum HLK1 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Phenylobacterium;species:Phenylobacterium zucineum; 0.905241971 0.928887749 0.888317144 0.961448235 0.91990982 0.913867269 0.911727866 0.902907755 0.891269808 0.924740379 0.909395042 0.921951876 0.911978464 0.883413361 0.911464367 0.890463731 0.956726623 0.895289522 365750079 amyA Enterobacter cloacae EcWSU1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter cloacae; 0.920487593 0.904190655 0.923751785 0.90454056 0.914447467 0.904715892 0.850058595 0.85687249 0.913715855 0.914646649 0.935044544 0.951228454 0.905986425 0.920456818 0.945135727 0.90790291 0.937478121 0.958927001 390570507 B_lactamase_A Burkholderia terrae BS001 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia terrae; 1.129265021 1.102144821 1.059757543 1.106974941 1.05328709 1.072860727 1.031103448 1.05684566 1.11374885 1.076181951 1.064533334 1.091539606 1.046763197 1.038871655 1.053212268 1.082598277 1.118429857 1.066952141 111147341 cdh Frankia alni ACN14a Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia;species:Frankia alni; 0.872250666 0.905799644 0.879788522 0.895918159 0.895012351 0.881698015 0.827662363 0.813325697 0.821335541 0.924090326 0.832114886 0.85498651 0.865034778 0.861514915 0.886906552 0.887191438 0.932580693 0.84494132 119955705 vgb Mycobacterium vanbaalenii PYR-1 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 1.075405963 1.052320711 1.026320083 1.063081795 1.073749798 1.057142619 0.957892118 0.993611776 1.066655474 1.034713515 1.049848513 1.07426828 1.023054831 1.034480819 1.015795252 1.009692268 1.08200433 1.064368672 119872152 alkk Pyrobaculum islandicum DSM 4184 Organic Remediation Others NA superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum islandicum; 0.892005503 0.951979068 0.941970709 0.923024962 0.92461266 0.978006188 0.923981113 0.963064256 0.943507061 0.936521357 0.94559125 0.92814632 0.87881548 0.908301266 0.915768249 0.906895639 0.899987945 0.965080931 261281022 amyA Paenibacillus sp. Y412MC10 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 1.20773365 1.221326431 1.157879169 1.180044353 1.168628722 1.197319004 1.144097073 1.17005623 1.164138335 1.175733085 1.191986383 1.180832037 1.147000285 1.169415952 1.119375057 1.181038535 1.194012129 1.196028978 270510620 urec Streptosporangium roseum DSM 43021 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 1.346102422 1.333810511 1.334941006 1.290545932 1.295742483 1.310194253 1.283407598 1.257869433 1.302743224 1.317676677 1.305076225 1.308302839 1.28685339 1.266540936 1.274107002 1.266413853 1.33486398 1.33599143 113526540 mdld Ralstonia eutropha H16 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 0.845371203 0.851465358 0.808018404 0.893421146 0.812474111 0.830719908 0.826697694 0.853220042 0.876857242 0.841179293 0.825259343 0.827204285 0.828449647 0.840361272 0.837165604 0.860506165 0.862550837 0.816949108 365971867 cysJ Enterobacter cloacae EcWSU1 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter cloacae; 0.799413297 0.891039759 0.864179339 0.843744833 0.858125221 0.844325255 0.963010608 0.846192927 0.851497054 0.844191597 0.845395091 0.811932135 0.846217718 0.866757972 0.86374261 218893996 mdlc Pseudomonas aeruginosa LESB58 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 1.338396727 1.335428529 1.310207792 1.343790044 1.304883756 1.362715488 1.32273584 1.315849649 1.301348642 1.304618595 1.308434861 1.323615728 1.28183198 1.283381481 1.251601897 1.293824065 1.327002593 1.31612997 383774454 mdlc Bradyrhizobium sp. S23321 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.813108237 0.872689563 0.882264019 0.853219936 0.852942401 0.830311151 0.815425256 0.935137218 0.801317943 0.820975326 0.898168569 0.849942355 0.845734126 0.883378713 0.892212787 197716508 pectinase (pectate_lyase) Streptomyces sviceus ATCC 29083 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 0.996266613 1.047607998 0.945258271 0.976452324 0.994513187 1.079625741 0.954416412 0.986811479 0.960978745 1.027672059 0.971304124 0.97919651 0.958686063 1.046415065 0.981616352 0.995651621 1.015211277 1.028887667 112462785 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.916091321 1.008634442 0.924224559 0.911391615 0.918643921 0.908054556 0.891112562 0.876693555 0.935775497 0.930855813 0.860929048 0.899305115 0.892373147 0.899391297 0.840552047 0.859522042 0.919270722 0.971063598 354583337 amyA Paenibacillus lactis 154 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus lactis; 0.956839855 0.940949494 0.963358843 0.988610217 0.96616009 0.949383847 0.958207224 0.952081192 0.958336109 0.95336477 0.96241471 0.980186291 0.936607633 0.888958487 0.866631453 0.95152632 0.984597075 0.971986096 296426642 phenol_oxidase uncultured bacterium Carbon Cycling Carbon degradation Lignin superkingdom:Bacteria; 1.241407192 1.256069631 1.228316692 1.252685116 1.225134351 1.22779123 1.194942792 1.209099839 1.201247483 1.218835799 1.193587034 1.218049885 1.206875098 1.198051758 1.185323677 1.186618652 1.244336842 1.233385385 26278738 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.059239878 1.078661829 1.042943396 1.044345176 1.078541946 1.080495576 1.061476985 1.017351429 1.02261518 1.050467284 1.057186893 1.049660009 1.042840946 1.056258439 1.073490406 1.02403012 1.058058879 1.051958689 68345139 mdlc Pseudomonas fluorescens Pf-5 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 1.315214284 1.276633493 1.267267279 1.286591784 1.251037611 1.284766965 1.258505276 1.259182939 1.258670434 1.252372753 1.252204555 1.27839352 1.236731742 1.235478175 1.237084426 1.255007679 1.291992414 1.235999676 254947797 mer Dyadobacter fermentans DSM 18053 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Dyadobacter;species:Dyadobacter fermentans; 0.900818984 0.854868171 1.022546749 0.855721837 0.846012848 0.935280444 0.818401625 0.904896006 0.832586412 0.889758876 0.931166894 0.830208252 0.854675401 0.896410811 0.976299716 0.869248327 0.953679842 0.942010845 376315858 ppx uncultured Flavobacteriia bacterium Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia; 0.831457901 0.889347073 0.829853835 0.886509398 0.91700239 0.901723286 0.855068658 0.88092302 0.842547661 0.898799024 0.854581434 1.031695867 0.857096198 0.882266354 0.862241421 0.822172579 0.860707865 146304410 acaB_arch Metallosphaera sedula DSM 5348 Carbon Cycling Carbon fixation 3-hydroxypropionate/4-hydroxybutyrate cycle superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Sulfolobales;family:Sulfolobaceae;genus:Metallosphaera;species:Metallosphaera sedula; 0.828578343 0.790851713 0.836367042 0.8176677 0.784053992 0.848828685 0.796602426 0.871885395 0.812007799 0.781490564 0.850045125 89513030 nifh uncultured nitrogen-fixing bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 1.036299159 1.024703134 0.980116135 1.020922205 0.994788071 1.002772603 0.972408348 1.011586535 0.968266181 0.977282701 1.048835716 1.014485568 0.988451051 0.985600642 1.047536757 0.993356128 0.998548484 1.029819488 343802060 cellobiase Thiocapsa marina 5811 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiocapsa;species:Thiocapsa marina; 1.019124444 1.033915781 0.979878403 1.008415914 0.971301206 1.001092534 0.976616808 0.99757773 0.990256622 0.985669818 0.972570648 0.990848462 0.951482822 0.961691155 0.924109694 0.960831601 1.009302877 1.019559581 403404591 mdlc Gordonia namibiensis NBRC 108229 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia namibiensis; 1.041635358 0.953579188 0.963600595 0.964758811 0.93488048 0.982236411 0.886833497 0.934352616 0.989642254 0.969927776 0.961274037 0.94388155 0.940156203 0.904816876 0.903096674 0.928467207 1.018046261 0.93509797 28971837 xylj Sphingomonas sp. P2 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 0.913708779 0.908664919 0.905379164 0.923470979 0.916790712 0.927559005 0.940634309 0.927852494 0.90715273 0.948344048 0.900108167 0.911528523 0.90801397 0.89721969 0.880781197 0.881418308 0.93208962 0.940596602 118000784 urec Comamonas testosteroni KF-1 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 0.879897956 0.862734889 0.83036308 0.91331155 0.852491212 0.85816633 0.861650602 0.878188047 0.877753857 0.829089649 0.856591368 0.878130111 0.829145226 0.82069028 0.804008906 0.828028517 0.896088071 0.886923613 89952479 endoglucanase Saccharophagus degradans 2-40 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Saccharophagus;species:Saccharophagus degradans; 0.870280502 0.804026793 0.794295311 0.819737814 237880492 nitrilase Burkholderia glumae BGR1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia glumae; 0.89540623 0.945091661 0.916733795 0.953800583 0.915771749 0.932859695 0.885273526 0.915336977 0.911501429 0.872293809 0.84919691 0.881351151 0.913875758 0.845688312 0.858820382 0.848294841 0.936336548 0.928825691 219847902 MMCE Chloroflexus aggregans DSM 9485 Carbon Cycling Carbon fixation 3-hydroxypropionate bicycle superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aggregans; 0.866078199 0.890595806 0.798635165 0.906050566 0.859521039 0.81787634 0.819843513 0.821119298 0.880784975 0.834056622 0.839874785 0.861715382 0.882649748 0.829527637 0.885416413 0.85978295 0.938815228 118618420 urec Mycobacterium ulcerans Agy99 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium ulcerans; 1.338267603 1.333635719 1.291134413 1.310027169 1.27939853 1.359952743 1.294620473 1.307388412 1.279167284 1.295340231 1.300537251 1.289127971 1.282358431 1.284653592 1.245182747 1.276530932 1.336712507 1.304286331 158444652 apu Faecalibacterium prausnitzii M21/2 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Faecalibacterium;species:Faecalibacterium prausnitzii; 1.275326328 1.2644598 1.215458132 1.232803407 1.208689377 1.272391863 1.22046472 1.213358907 1.232553318 1.231316178 1.210113124 1.223393591 1.200911856 1.203952903 1.208548064 1.219630593 1.261852289 1.228397254 302560783 ara Streptomyces griseoflavus Tu4000 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseoflavus; 1.183248371 1.208987622 1.161067162 1.190018346 1.120642561 1.177433649 1.141916143 1.1956644 1.219657671 1.177476751 1.108472796 1.17075689 1.104458622 1.119931049 1.071979406 1.126403504 1.195489077 1.207084791 333444662 APS_AprB Methyloversatilis universalis FAM5 Sulfur adenylylsulfate reductase NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Methyloversatilis;species:Methyloversatilis universalis; 1.079622519 1.091227829 1.091277976 1.099953987 1.096055416 1.111408717 1.07570955 1.062125546 1.060473728 1.079874072 1.037174467 1.046378965 1.027458815 1.015948635 1.01624836 1.018762988 1.093021114 1.107908955 82947026 nosz Magnetospirillum magneticum AMB-1 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum magneticum; 0.985875636 0.955187267 0.978531096 1.020841996 0.945972918 1.002911553 0.985820262 0.986010162 0.992118143 0.90970622 0.961765407 0.984669789 0.912667007 0.910099094 0.913342437 0.96502474 0.95681899 0.958789625 260631136 atza Jonquetella anthropi E3_33 E1 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Synergistetes;class:Synergistia;order:Synergistales;family:Synergistaceae;genus:Jonquetella;species:Jonquetella anthropi; 0.959813222 1.01792905 0.94186385 1.001099081 1.117554992 0.957614608 1.050335206 0.942478026 0.946260987 1.054771663 0.962634424 0.958268149 1.004706903 1.013326164 0.864680414 0.980733001 0.951787717 0.97599363 86355887 endoglucanase Rhizobium etli CFN 42 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 1.06207628 1.022890246 1.038546344 1.045648643 1.054476898 1.043367136 1.063878459 1.068033804 1.037032941 1.023857848 0.995895612 0.983105725 0.988428819 0.985441151 0.95805612 0.978437461 1.056988878 1.045976096 147849356 narb Synechococcus sp. WH 7803 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 0.908661184 0.901548337 0.817535869 0.964247008 0.905180434 0.895355536 0.824696554 1.053282211 0.949595408 0.907251271 0.843978351 0.947889096 0.893918955 0.857789188 0.937393036 0.907136183 0.914215299 76058367 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.001509613 1.005949856 0.988793111 1.011470941 0.987007024 0.979545876 0.982630431 0.997369768 0.990289986 0.990086497 1.012777566 1.004694832 0.95026844 0.953820962 0.936288752 0.982696603 0.965387264 0.993343842 372985287 urec Oceanimonas sp. GK1 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Oceanimonas; 1.011531665 0.922140225 0.940086758 0.965430562 0.985347961 0.952534621 0.930955731 0.94347761 0.94498427 0.929640757 0.939208656 0.981496136 0.882645039 0.887701405 0.938024432 0.954090249 1.028771662 0.934386614 242240028 nifh Dickeya dadantii Ech703 Nitrogen Nitrogen fixation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya dadantii; 1.368653796 1.350005306 1.421913188 1.35326251 1.386132163 1.39439867 1.359851353 1.375933992 1.362879679 1.404521152 1.339622614 1.336844741 1.361529475 1.314832565 1.337272306 1.346964672 1.393494305 1.344059521 344221953 rubisco uncultured bacterium Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria; 0.866581193 0.880519751 1.003582645 0.887807481 0.788693502 0.842088655 0.838012211 0.859016118 0.810215188 0.826970698 333992664 linb Mycobacterium sp. JDM601 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 1.273394261 1.293776342 1.250816896 1.216704148 1.201195336 1.27135077 1.195539496 1.242765301 1.226240192 1.231673618 1.234309016 1.245305587 1.193668171 1.23402363 1.18991321 1.236532715 1.237328326 1.268666301 159045313 atzb Dinoroseobacter shibae DFL 12 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 1.151712187 1.143483883 1.111015723 1.157160918 1.11201485 1.162966449 1.092171177 1.067456553 1.110984593 1.096707294 1.126118306 1.124262988 1.076461269 1.078761973 1.069428506 1.087536971 1.140007226 1.134314256 371651090 nifh Lachnospiraceae bacterium ACC2 Nitrogen Nitrogen fixation NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Stomatobaculum; 1.062745064 0.982885155 0.967885732 0.947430609 0.907631972 0.806480093 0.850055562 0.973378086 0.955345566 0.863724069 0.845190378 0.965754575 0.827870931 0.774951048 0.945497442 147886104 phenol_oxidase uncultured bacterium Carbon Cycling Carbon degradation Lignin superkingdom:Bacteria; 1.099750408 1.112353681 1.066824106 1.068627926 1.031841916 1.081223291 1.02132632 1.02555053 1.061612819 1.05789654 1.041590431 1.026084206 1.031923673 1.064209785 0.982311791 1.056626243 1.078671505 1.074695244 333830085 amoa uncultured ammonia-oxidizing bacterium Nitrogen Nitrification NA superkingdom:Bacteria; 0.870953792 0.957791419 0.891171421 0.920934209 0.918888918 0.91380449 0.87249611 0.851404016 0.873378102 0.925136249 0.824250504 0.877921343 0.893127926 0.872439679 0.843485447 0.94271799 0.928030292 0.913361021 46015 nifh Rhodobacter capsulatus Nitrogen Nitrogen fixation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter; 0.874327672 0.989626514 0.888295612 0.917190701 0.900804556 0.961927875 0.846783612 0.862453777 0.925927133 0.94243672 0.879610701 0.932709598 0.902625649 0.869691465 0.871520727 0.91634927 0.919030408 0.958993639 33391479 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.804205559 0.804654287 0.853389617 332558902 terc Rhodobacter sphaeroides WS8N Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 1.076807642 1.057540272 1.042120788 1.091441994 1.051999194 1.043285409 1.063270427 1.063346184 1.034723442 1.02794442 1.041522472 1.063234546 0.997962863 1.000780203 0.978205692 1.005784031 1.064180525 1.059954563 91689638 one_ring_12diox Burkholderia xenovorans LB400 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 0.985706096 0.982584587 0.98321436 0.971720848 0.978667444 0.981189773 0.97618964 0.968325161 0.966803703 0.980232413 0.938166547 0.946082579 0.925702561 0.916037434 0.886449328 0.900476389 0.953842682 0.98565218 119384611 FBPase Paracoccus denitrificans PD1222 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 0.970959368 0.941075812 0.898458846 0.955872878 0.864043117 0.931880639 0.882434191 0.901493218 0.952961353 0.96694359 0.927343101 0.906348808 0.869299147 0.890661794 0.849838537 0.849350232 0.943139353 0.957849346 300710074 dehh109 Halalkalicoccus jeotgali B3 Organic Remediation Chlorinated solvents NA superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halalkalicoccus;species:Halalkalicoccus jeotgali; 0.805854627 0.79847381 0.833159909 0.861742038 0.935202251 0.810319632 0.819852891 0.818442822 0.902761354 0.828930571 0.802611445 0.974688782 0.832164779 0.853755791 124488337 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.189254298 1.193988764 1.244665795 1.238822252 1.190332237 1.171004371 1.269250525 1.187282346 1.176556875 1.238158474 1.191175096 1.209693209 1.16617209 1.150579009 1.125720792 1.132149721 1.179368003 1.171304129 332699146 fthfs Mahella australiensis 50-1 BON Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacterales Family IV. Incertae Sedis;genus:Mahella;species:Mahella australiensis; 0.932218947 0.914968612 0.935241173 0.941032101 0.929453863 0.881176449 0.917484936 0.908051878 0.901830095 0.899289381 0.929698773 0.921592076 0.863501567 0.843548523 0.809073036 0.857209204 0.933932514 0.949043526 93355950 norb Cupriavidus metallidurans CH34 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 0.880068601 0.874204476 0.84381459 0.929041905 0.870708904 0.844092639 0.893552377 0.880292332 0.927809026 0.814180753 0.912371065 0.840548656 0.811964747 0.84626107 0.888577703 46409941 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.955080144 0.950883845 0.968642114 0.956446025 0.999162867 0.958351405 0.879338068 0.876342684 0.91279709 0.899270015 0.844645529 0.914764433 0.915425541 0.892771279 0.863846375 0.886858857 0.979822322 0.978674064 341925977 chitinase Chitiniphilus shinanonensis Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Chitiniphilus; 1.234543613 1.265526155 1.246686751 1.220231747 1.179820629 1.208650862 1.176342141 1.242985976 1.216054934 1.193597457 1.213342484 1.228324198 1.159000877 1.177639171 1.173242202 1.18161138 1.201514392 1.208460778 225037850 amyA Blautia hydrogenotrophica DSM 10507 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Blautia;species:Blautia hydrogenotrophica; 1.119821063 1.112124459 1.075067896 1.093927149 1.08019326 1.137704823 1.091221546 1.067700526 1.08526296 1.156795549 1.093921146 1.075448288 1.072761371 1.121459825 1.090453184 1.073467697 1.116364018 1.121320319 352682303 adhC Thermoproteus tenax Kra 1 Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Thermoproteus;species:Thermoproteus tenax; 0.970494366 0.979063649 0.947574432 0.977266239 0.92866961 0.960708588 0.939091803 0.926453249 0.966237403 0.958286343 0.925681261 0.980083275 0.92766536 0.943444629 0.957790509 0.953195368 0.987102866 0.961842387 260575807 TIM Rhodobacter sp. SW2 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter; 1.010326455 1.047058971 0.9589037 1.03845443 0.998252596 1.014200343 0.950878477 0.95049571 0.970534916 0.956287535 0.952007707 1.008009785 0.949660315 0.943397488 0.88027387 0.929471758 1.010968314 1.030984424 89145076 ppk Microbacterium foliorum Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Microbacterium; 1.220239093 1.213777397 1.164411564 1.172393442 1.163563048 1.239632856 1.138604912 1.157084978 1.156578636 1.170043406 1.14169032 1.159027447 1.159393205 1.152360015 1.132417417 1.157075306 1.199776596 1.229017144 218239490 gdh Alicyclobacillus acidocaldarius LAA1 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Alicyclobacillus;species:Alicyclobacillus acidocaldarius; 0.775328972 0.812074146 75704537 amyA Anabaena variabilis ATCC 29413 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Anabaena;species:Anabaena variabilis; 0.772315177 0.791862338 162952576 ppx Renibacterium salmoninarum ATCC 33209 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Renibacterium;species:Renibacterium salmoninarum; 0.868109181 0.88307882 0.886318744 0.792833445 0.827511503 0.802778322 0.87794714 0.850028031 0.865830443 0.819780632 0.923272878 0.846745178 116804538 nasa uncultured prokaryote Nitrogen Assimilatory N reduction NA 1.101013304 1.072848547 1.046169843 1.059947034 1.089970774 1.118551778 1.050552145 1.031809557 1.051671096 1.083816496 1.070973604 1.070000255 1.043322281 1.058370816 0.999203391 1.065772464 1.081780594 1.075187646 390411811 glucoamylase Terriglobus roseus DSM 18391 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Terriglobus;species:Terriglobus roseus; 0.808656171 0.80001848 0.824658529 0.833799562 86169120 urec Synechococcus sp. RS9917 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 0.974433439 1.008365789 0.954361828 0.983570535 0.947365461 0.930957082 0.953172866 0.986319922 1.011573495 0.987929432 0.925757237 0.96731916 0.928375807 0.935145099 0.899676767 0.95152206 1.010002085 1.010204332 329305316 bphd Streptomyces griseoaurantiacus M045 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseoaurantiacus; 0.826541143 0.911703862 0.870804 0.919140041 0.927304695 0.905393279 0.903454988 0.963466773 0.910153164 0.95198592 0.942906094 0.922446084 0.898838761 0.893500432 0.86087304 0.927696834 359836137 amyA Actinoplanes sp. SE50/110 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes; 1.389354532 1.358681696 1.352867856 1.334490737 1.349362721 1.407871182 1.33029304 1.36101832 1.320880694 1.352196039 1.357108141 1.346629576 1.337273659 1.364383865 1.364118177 1.365247627 1.34010736 1.347901188 255957243 alkb uncultured bacterium Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria; 1.489494875 1.459455348 1.441315428 1.456569478 1.424902463 1.493008956 1.438542065 1.458779295 1.439986648 1.431211347 1.432837935 1.455991337 1.40284082 1.403056037 1.403990119 1.433368192 1.464088718 1.425178513 371721264 ccmL Caldithrix abyssi DSM 13497 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;genus:Caldithrix;species:Caldithrix abyssi; 0.901164653 0.905839788 0.853952241 0.849334047 0.860788134 0.869923464 0.905501904 0.849674712 0.836853037 0.897397618 0.844933982 0.931465711 0.805051493 0.840027817 0.798203191 0.876658044 0.893252302 256392417 amyA Catenulispora acidiphila DSM 44928 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 1.065674083 1.09183233 1.052202663 1.050786754 1.037435891 1.072976629 1.011015064 1.021653875 1.05159266 1.043442323 1.043582236 1.016182154 0.994591128 1.020810117 0.981412199 1.064793332 1.069038692 1.056511849 110600695 mer Geobacter sp. FRC-32 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 0.927502324 0.938622473 0.885503464 0.921300145 0.876605224 0.884187793 0.866806089 0.880021132 0.925824524 0.894886317 0.878189403 0.895088223 0.851715662 0.949354062 0.845785899 0.878854556 0.934223846 2980618 xylanase Thermobacillus xylanilyticus Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Thermobacillus; 1.528659103 1.473058102 1.468290878 1.481769294 1.483601818 1.478946415 1.458100729 1.485827981 1.482144285 1.448701088 1.452956915 1.47512431 1.451310233 1.390142417 1.461297435 1.432802045 1.478120893 1.436977725 296922693 gdh Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium;species:Propionibacterium freudenreichii; 0.952029178 0.940354396 0.969033622 0.950277323 0.887772703 0.826527204 0.860314998 0.89234095 0.983972557 0.939756842 0.918215683 0.928326782 0.896799344 0.84499166 0.828304368 0.846587451 0.968150319 0.931496997 257052312 ophc Halorhabdus utahensis DSM 12940 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halorhabdus;species:Halorhabdus utahensis; 0.86316015 0.819801501 0.782300109 0.827015168 119536164 amyA Nocardioides sp. JS614 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 1.135518731 1.116629717 1.099293577 1.138556994 1.070470953 1.121749513 1.061540136 1.095903713 1.088137334 1.099923372 1.103352454 1.092999599 1.073934027 1.068254377 1.064829379 1.078944891 1.134301695 1.098382917 295898378 linb Mycobacterium parascrofulaceum ATCC BAA-614 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium parascrofulaceum; 1.084511074 1.050559684 1.060032784 1.06928857 1.058837492 1.082395567 1.041299297 1.023485141 1.072424821 1.054514259 1.026845274 1.040608018 1.050807487 1.024041078 0.98457844 1.010576182 1.085016384 1.065776822 377523923 narg Gordonia otitidis NBRC 100426 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia otitidis; 0.956453929 0.975971178 0.842090471 0.949657973 0.895205972 0.920991495 0.842495565 0.822149461 0.853333647 0.934301909 0.854669559 0.898396334 0.861498295 0.887151312 0.891349565 0.961912991 0.981280175 330838152 B_lactamase_A Selenomonas sputigena ATCC 35185 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas sputigena; 0.939654749 0.901358095 0.929575602 0.947766839 0.930202611 0.929497623 0.905838824 0.91003491 0.917389901 0.915781644 0.900005979 0.925541708 0.91079712 0.901438894 0.869779343 0.89627312 0.940404112 0.934861622 338740065 narg Hyphomicrobium sp. MC1 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium; 0.967652582 0.895390914 0.873847869 0.96868894 0.975235263 0.872779801 0.893098358 0.918362511 0.954501893 0.93730416 0.879829658 0.935802461 0.922207324 0.8855597 0.873732225 0.888007599 0.932898697 0.886563184 124894119 terc Burkholderia dolosa AUO158 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia dolosa; 1.128370068 1.135560325 1.103056647 1.144939016 1.104175989 1.135613596 1.109787609 1.133080242 1.105132778 1.110470203 1.104709166 1.15724559 1.08642857 1.129892759 1.104663548 1.117130396 1.124724951 1.135288573 62468092 bco uncultured bacterium Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria; 0.821533019 0.796346928 171852756 urec Corynebacterium urealyticum DSM 7109 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium urealyticum; 0.997443876 1.050109347 0.970480918 1.053593792 0.963509772 1.007029909 0.957798889 0.987083734 0.978828696 1.015820105 0.968866438 0.994978409 1.009000372 0.966653904 0.9888059 0.970825175 1.044678408 1.014240424 210074669 ara Penicillium marneffei ATCC 18224 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 0.985252588 0.983158105 0.986875365 0.96621049 0.980709588 0.982712823 0.965404703 0.961774883 0.946900558 1.032780819 0.995203513 0.979400355 0.91095426 0.928706306 0.978451996 0.936585465 1.001144831 1.002520834 299123701 urec Halalkalicoccus jeotgali B3 Nitrogen Ammonification NA superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halalkalicoccus;species:Halalkalicoccus jeotgali; 1.208729311 1.180213722 1.233049584 1.192623594 1.18412659 1.19755562 1.160518339 1.166196565 1.168403849 1.195906721 1.188757743 1.19836206 1.144819118 1.132853856 1.103050706 1.187617992 1.172788445 1.149310381 297203175 amyA Streptomyces sviceus ATCC 29083 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 1.072252142 0.993991776 0.967946256 1.01541916 0.989824698 0.987086206 1.005041186 1.04900565 0.998023189 0.969528164 0.958860471 1.011783913 0.986453236 0.956177601 0.928305638 0.960498113 0.992823687 0.973744145 157168013 arsc uncultured bacterium Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 0.942766978 0.941109527 0.879530675 0.954202546 0.808239547 0.924141363 0.917417295 0.914094086 0.955418852 0.921668634 0.833406871 0.928061287 0.815635997 0.837899728 0.813872226 0.853442192 0.951827755 1.018746967 344317269 xylg Streptomyces sp. SirexAA-E Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 1.305321498 1.267458017 1.255602209 1.247771815 1.195043804 1.249249253 1.195491808 1.210868191 1.273404223 1.234138099 1.204215512 1.227290704 1.19407459 1.187207963 1.198913405 1.192400851 1.261798369 1.257928828 214031728 pcag Ruegeria sp. R11 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 0.986223877 1.033962006 1.075447863 0.963793203 1.075398661 1.036257259 1.019194547 0.961818688 0.970450385 1.034686268 1.116530933 0.973297037 1.047671135 1.044021047 1.03546681 1.082684732 0.971358976 0.992519572 13473384 arsc Mesorhizobium loti MAFF303099 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 0.770274727 0.834405994 0.788252785 0.807535411 0.825375841 0.866458193 296263874 aoxb Roseomonas cervicalis ATCC 49957 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Roseomonas;species:Roseomonas cervicalis; 0.854240327 0.865562185 0.834395677 0.783747382 0.838486135 0.827644081 0.801163872 0.841127164 0.873785746 309395684 cellobiase Stigmatella aurantiaca DW4/3-1 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 0.964843204 0.869335509 0.921537349 0.943445634 0.974382853 0.915099687 0.994650469 0.992487664 0.927084296 0.885389425 0.931739773 0.908986619 0.912475005 0.857032881 0.817064368 0.823464136 0.909568141 0.835318242 229360816 fosa Pseudomonas fluorescens SBW25 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 1.032283009 0.995340772 0.96201495 0.986606522 1.024882217 0.974003982 0.987434091 0.962224496 0.980203227 0.985890714 0.970833482 0.965157134 0.98465053 1.001654641 0.921595279 0.956669824 0.978442025 1.004318108 112462259 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.936649372 0.966174925 0.927654357 0.896219114 0.855709642 0.931384641 0.866397887 0.91941153 0.889824247 0.907271536 0.885791821 0.912750639 0.907708758 0.853640516 0.881626953 0.873416995 0.950586727 0.947437361 266622128 hyaluronidase Clostridium hathewayi DSM 13479 Carbon Cycling Carbon degradation hyaluronic acid superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hathewayi; 1.025944442 1.015097621 0.996296297 0.996214959 0.968303281 0.963978883 0.989459558 1.00379519 0.979427074 0.960788169 0.962473215 0.939518328 0.938016494 0.879334464 0.933819668 0.90566528 0.995581299 0.98148155 2588997 exaa(moxf) Hyphomicrobium methylovorum Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium; 0.842605251 0.820717602 0.940025996 0.850521886 0.834334431 0.799914519 0.823417058 0.831572767 0.834859228 0.883289673 288336259 xyla Prevotella buccae D17 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella buccae; 1.155835292 1.179211564 1.145272058 1.15249963 1.173721686 1.186845014 1.159728191 1.135015577 1.128802101 1.189790077 1.16085477 1.142824472 1.114475934 1.146736668 1.074806887 1.142479796 1.181926204 1.162247683 94984647 amyA Deinococcus geothermalis DSM 11300 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus geothermalis; 0.806118897 0.809067236 0.80361125 0.794132955 0.801205882 0.789342823 0.783713989 209549502 amyA Rhizobium leguminosarum bv. trifolii WSM2304 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 1.015694106 0.978916274 0.983497166 0.939584733 0.965855978 1.040524259 1.012557864 1.010017113 0.945563767 0.935591372 0.981052656 0.949686735 0.946419357 0.912693213 0.917351967 0.891324117 0.942402129 0.963530329 40787177 phn Pseudomonas stutzeri Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.865958129 0.91116499 0.897352676 0.947747513 0.952220661 0.897772251 0.924369817 0.909308459 0.895038436 0.874512537 0.850174358 0.930417808 0.924230413 0.86847446 0.867705763 0.944355063 0.877624758 365178320 B_lactamase_A Sinorhizobium fredii HH103 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium fredii; 0.963231488 0.993562335 0.992219911 0.998801502 1.048763604 1.03678917 0.951367639 0.979172457 1.032717143 0.964259986 0.967100386 0.95529726 0.931227901 0.983359673 0.957044649 1.001772458 0.974577886 1.009314831 302558302 amyA Streptomyces griseoflavus Tu4000 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseoflavus; 1.283463741 1.277052527 1.231014306 1.229777346 1.245122138 1.290110896 1.257283198 1.255500887 1.231153652 1.238240068 1.252267041 1.236978526 1.238078344 1.223173529 1.234104625 1.191773603 1.242578558 1.239402644 23494147 one_ring_12diox Corynebacterium efficiens YS-314 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium efficiens; 1.162863376 1.148351539 1.057531155 1.128832816 1.14708189 1.114742169 1.107331939 1.071309601 1.115567892 1.091086211 1.065408623 1.068873151 1.076726712 1.061591845 1.017480307 1.107686836 1.105680179 1.140937041 325921453 ara Xanthomonas gardneri ATCC 19865 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas gardneri; 0.844619254 0.883604375 0.872240522 0.874434227 0.783730411 0.834407484 0.831238133 0.840200394 0.86849122 0.888158471 0.809088707 0.858495686 0.818777348 0.831422701 0.887118352 0.889245382 119495292 phospholipase_C_fungi Neosartorya fischeri NRRL 181 Carbon Cycling Carbon degradation Phospholipids superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 0.926517768 0.805930581 23100011 amyA Oceanobacillus iheyensis HTE831 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Oceanobacillus;species:Oceanobacillus iheyensis; 0.829888142 0.866520732 0.823592929 0.824406397 0.823115842 0.891794028 0.830795262 0.809234045 0.900566608 0.83707585 0.824016045 0.829356892 110827186 vana Verminephrobacter eiseniae EF01-2 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 0.985293939 0.996484394 1.003291573 0.958420942 0.936320769 0.982970951 0.968839626 0.966819631 0.98192485 0.995385948 0.943932089 0.984951048 0.916915769 0.934075789 0.919533887 0.898191858 0.978954812 1.034083283 258576799 nirk Uncinocarpus reesii 1704 Nitrogen Denitrification NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Onygenaceae;genus:Uncinocarpus;species:Uncinocarpus reesii; 1.040616135 1.022518828 1.075056367 1.098776534 1.053981164 1.040626391 1.054786192 1.066540945 1.085325789 1.040578395 1.057565985 1.073234323 1.039235167 1.009244614 1.006802261 1.036003107 1.059968393 1.006800784 309368354 pgk Vibrio caribbenthicus ATCC BAA-2122 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio caribbenthicus; 0.877544651 0.928975498 0.866531702 0.847702553 0.846306564 0.915311653 0.867535693 0.830341876 0.871766914 0.824289222 0.849944653 0.906023261 0.901077963 255034706 arsc Dyadobacter fermentans DSM 18053 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Dyadobacter;species:Dyadobacter fermentans; 1.131291172 1.086656935 1.091594135 1.134241671 1.106087232 1.079776359 1.078728947 1.056624974 1.123921959 1.086269605 1.068022967 1.107637232 1.071752213 1.007603328 1.065396746 1.032911586 1.128509527 1.081668575 297162605 endoglucanase Streptomyces bingchenggensis BCW-1 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces bingchenggensis; 0.904774707 0.874156738 0.840381973 0.855608749 0.81285423 0.83930111 0.916572451 0.817804786 0.816384102 0.833866416 0.863159387 0.804254874 0.811051772 0.881546666 0.863491421 373892314 ara Mucilaginibacter paludis DSM 18603 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Mucilaginibacter;species:Mucilaginibacter paludis; 1.007617982 1.012050743 1.024633289 1.018786121 1.011861226 1.018398835 0.992423871 1.000403464 0.99807456 1.048246225 1.021520331 1.043934967 0.9841799 0.983465439 0.978849875 0.982091793 0.983924359 1.015943182 300692810 norb Ralstonia solanacearum PSI07 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 0.920720647 0.923249323 0.91546601 0.904766125 0.95163067 0.906805249 0.886793746 0.887399 0.907481854 0.921934078 0.827029932 0.890648895 0.886160831 0.8646465 0.896467117 0.948790582 0.937254762 0.969045596 133778530 endochitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 0.973587433 0.94169704 0.934909119 0.882950386 0.883163228 0.874000099 0.952792521 0.901175185 0.96205935 0.935228033 0.893071426 0.923254447 0.940147315 0.902164621 0.877756643 0.96874361 0.961919804 0.966524618 254941670 invertase_fungi Lecythophora sp. olrim22 Carbon Cycling Carbon degradation sucrose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Coniochaetales;family:Coniochaetaceae;genus:Lecythophora; 0.892330127 0.83802831 0.859617058 0.888508851 0.816585563 0.847175853 0.855297529 0.879149791 0.832678518 0.854906637 0.868828268 0.826158672 0.830359453 0.878311058 0.854692854 0.801293287 282324556 xylg Staphylococcus aureus subsp. aureus WBG10049 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Staphylococcus;species:Staphylococcus aureus; 1.588354422 1.539631255 1.557231664 1.532767909 1.539848979 1.567432804 1.536940097 1.552272779 1.543319345 1.517404659 1.550755881 1.537256143 1.522744336 1.486296634 1.554887007 1.527886879 1.546001064 1.503990155 159488550 gdh Chlamydomonas reinhardtii Nitrogen Ammonification NA superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Chlorophyceae;order:Chlamydomonadales;family:Chlamydomonadaceae;genus:Chlamydomonas; 1.140231012 1.123159499 1.081641851 1.0714791 1.087760885 1.087564514 1.070632238 1.097347513 1.070017128 1.051772933 1.037233095 1.07415765 1.121017138 1.111919372 170027547 napa uncultured bacterium Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria; 0.871226512 0.914498894 0.861673327 0.855410199 0.881242495 0.931124765 0.895736752 0.867353808 1.002759634 0.842793454 0.892711795 0.924513027 0.917577255 0.890326991 0.899093344 0.925541488 0.911595365 0.940809977 312619710 amyA Eremococcus coleocola ACS-139-V-Col8 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Aerococcaceae;genus:Eremococcus;species:Eremococcus coleocola; 0.918180275 0.950369902 0.904262156 0.908221025 0.963599669 0.966861102 0.83668592 0.871518546 0.885678929 0.892388275 0.882920188 1.05254269 0.895496572 0.881388642 0.86367033 0.876108731 0.956317981 0.944778288 242264718 cellobiase Thermococcus sibiricus MM 739 Carbon Cycling Carbon degradation Cellulose superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Thermococcus;species:Thermococcus sibiricus; 0.897060145 0.823653569 0.9331049 0.880665031 0.860729033 0.844329627 0.876728366 0.877244254 0.855436836 0.866380711 0.928372311 0.83604609 0.844383901 0.904149268 0.877609621 390631199 amyA Weissella confusa LBAE C39-2 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Leuconostocaceae;genus:Weissella;species:Weissella confusa; 0.822613087 0.804995106 0.8581049 0.843006138 0.803625292 0.867709058 0.842614302 0.802353258 0.841022167 0.763555667 0.813349485 351731529 chitinase Acidovorax radicis N35 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax radicis; 1.185147921 1.1694656 1.205763808 1.173932151 1.171900596 1.191372336 1.175918898 1.184929084 1.19853102 1.162774392 1.160013689 1.171341309 1.167242817 1.130596736 1.186507889 1.15369258 1.179557593 1.161129639 89069893 FBPase Oceanicola granulosus HTCC2516 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola granulosus; 1.477373869 1.47112835 1.461811772 1.449734672 1.448209743 1.505780925 1.418507058 1.420197715 1.443047971 1.431709749 1.425870456 1.434104968 1.416098453 1.40911649 1.41108665 1.437197755 1.473761118 1.449073054 299755403 chitin_deacetylase_fungi Coprinopsis cinerea okayama7#130 Carbon Cycling Carbon degradation Chitin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 0.911829385 0.859700663 0.856409911 0.926569842 0.914098093 0.934872217 0.903789245 0.863533417 0.921037973 0.914395147 0.891647962 0.906544334 0.83818399 0.781873646 0.819542153 0.885170507 0.870221269 260881610 phytase Mitsuokella multacida DSM 20544 Phosphorus Phytic acid hydrolysis NA superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Mitsuokella;species:Mitsuokella multacida; 0.944745836 0.967179868 0.897019581 0.971166134 0.901056069 0.92638177 0.871149087 0.883884317 0.933189417 0.938547059 0.884099293 0.921816482 0.873053703 0.878629091 0.875884327 0.949832434 0.963011347 294814796 chitinase Streptomyces clavuligerus ATCC 27064 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces clavuligerus; 1.184545141 1.113808595 1.135762588 1.16583612 1.13100095 1.145987343 1.133955902 1.140879935 1.16239498 1.138907497 1.126363191 1.157164444 1.114912945 1.124823586 1.140326256 1.11922823 1.174545557 1.117349387 383825688 amyA Mycobacterium xenopi RIVM700367 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium xenopi; 0.970753248 0.944129417 0.963212534 1.001442465 1.015284611 0.973059518 0.993933451 0.970425113 0.986604349 0.967712724 0.996992277 0.987634952 0.923299825 0.948220139 0.92351269 0.931403342 1.034287424 1.036679265 164425288 glucoamylase Neurospora crassa OR74A Carbon Cycling Carbon degradation Starch superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Neurospora;species:Neurospora crassa; 1.080446774 0.998515659 1.055976676 1.010582593 1.060372435 1.008815369 0.975581144 1.064728848 1.019372484 1.021126943 1.004727912 1.013182638 0.992049037 0.945879597 1.004641058 1.022042018 399985224 chnb Mycobacterium smegmatis str. MC2 155 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 0.76494163 0.811440291 0.804526606 0.827610831 0.785966467 0.831915145 0.813505746 0.780389905 0.823925092 227205709 chnd Rhodococcus sp. HI-31 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 0.86762114 0.958554881 0.824040062 0.893340581 0.865256681 0.910120966 0.847610935 0.858451826 0.853141467 0.89987976 0.859830593 0.875506437 0.83049155 0.851408451 0.862843005 0.872506393 0.880913888 294677918 PRI Rhodobacter capsulatus SB 1003 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter capsulatus; 0.817233977 0.822959437 0.904470498 0.807223197 0.82210648 0.816639155 0.825401032 0.853702972 0.844030885 0.83845918 0.848478977 0.774976248 0.862744131 119487901 urec Lyngbya sp. PCC 8106 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Lyngbya; 0.833957946 0.830737619 0.845290548 0.805102948 0.818342571 0.870533053 0.811238759 0.833217348 0.797473496 0.826377727 0.876508103 0.830729992 0.803381082 0.876655705 0.875473736 0.825955203 0.824580007 0.875482683 114307831 CsoSCA Nitrosomonas eutropha C91 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas;species:Nitrosomonas eutropha; 1.098052844 1.071745202 1.094926226 1.049427089 1.075537542 1.052627006 1.043863103 1.047513275 1.064698628 1.070565811 1.047652462 1.067084693 1.058362333 1.040380367 1.008276777 1.041219977 1.087895557 1.071106828 27349178 pcag Bradyrhizobium japonicum USDA 110 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 0.913468728 0.912771302 0.905890435 0.898016304 0.884678488 0.932539065 0.944173798 0.930650444 0.888028609 0.900417345 0.941320428 0.877656339 0.89728878 0.855562641 0.824430223 0.852414519 0.904357101 0.859017325 379254402 chitinase Saccharomonospora azurea NA-128 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora azurea; 1.097623601 1.138638695 1.135935794 1.118338612 1.094163711 1.137967863 1.108053094 1.10271372 1.077997979 1.107473378 1.101206776 1.122886593 1.06673222 1.090592214 1.06303437 1.056915523 1.123453027 1.130133773 338209654 nosz Runella slithyformis DSM 19594 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Runella;species:Runella slithyformis; 0.907764466 0.912363354 0.917971832 0.924471473 0.978497261 0.963670969 0.909088105 0.929645304 0.938371746 0.932748673 0.940044244 0.934039576 0.912503424 0.848220367 0.8627509 0.905625083 0.924473113 0.936161114 179346864 SoxC Methylobacterium populi BJ001 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium populi; 1.46832797 1.459684066 1.444321256 1.45698869 1.427776826 1.476474486 1.425162714 1.43308075 1.411309011 1.410854788 1.428250684 1.431333805 1.41506841 1.400716079 1.405558094 1.41876664 1.466490093 1.426249209 319978951 cda Actinomyces sp. oral taxon 178 str. F0338 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 178; 0.973137698 1.068141545 1.031299182 1.016424192 1.059335703 1.031634271 0.962135482 0.988880732 0.91719835 1.001132675 0.936594821 0.993833537 0.979284743 0.986535369 0.94022528 0.981268815 1.067895511 1.043288131 127511599 cysJ Shewanella loihica PV-4 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella loihica; 0.858240573 0.892559896 0.892319448 0.901137518 0.944548503 0.902784643 0.843136056 0.853079265 0.869333322 0.869215232 0.916997391 0.894778571 0.89338834 0.930658914 0.942906489 0.87886485 0.904169325 0.928275635 359462888 amyA Acaryochloris sp. CCMEE 5410 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Acaryochloris; 0.830025758 0.964671784 0.829766293 0.950892385 0.861438366 0.861194452 0.894070209 0.805380474 0.891036792 0.871063007 0.822973869 343774892 ppx Acidithiobacillus ferrivorans SS3 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus ferrivorans; 1.12321932 0.870414835 0.973354277 1.058605069 1.01442453 0.855504494 0.956915987 0.975081259 0.856664924 0.942366886 1.029043815 0.900864986 0.877869791 0.972274737 0.916769954 0.877078139 379056722 arsm Serinicoccus profundi MCCC 1A05965 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Serinicoccus;species:Serinicoccus profundi; 0.995975964 1.049116196 1.008228501 0.975368767 1.003087935 1.07015502 0.935690596 0.980324881 0.997098238 0.998263702 0.955158801 0.963607579 0.961074471 1.010600609 1.100595386 0.977871156 1.010925424 1.079574229 124266112 msmabcd Methylibium petroleiphilum PM1 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 0.95772305 0.953445239 0.882250113 0.922055763 0.847580987 0.933027311 0.873793376 0.934326959 0.932670854 0.971693286 0.906727302 0.942947873 0.837463761 0.922488148 0.84247606 0.878722392 0.954978808 0.979918253 327465456 ppk Neisseria bacilliformis ATCC BAA-1200 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria bacilliformis; 0.926538682 0.941674965 0.858096854 0.953922031 0.914419433 0.89147332 0.854458376 0.859993477 0.867073692 0.854621392 0.844998809 0.954014486 0.880467075 0.845573119 0.881879651 0.895744734 0.952997462 375057805 arsc Rhizobium sp. PDO1-076 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 0.832626665 0.891532927 0.824444756 0.826193879 0.834311552 0.891260326 0.804989691 0.854753743 0.803294755 0.851291406 290474160 acetylglucosaminidase Xenorhabdus bovienii SS-2004 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Xenorhabdus;species:Xenorhabdus bovienii; 1.422723093 1.390015481 1.407081895 1.414526349 1.391033838 1.421951266 1.369297402 1.390238878 1.393392511 1.357386866 1.383997275 1.383573246 1.358743822 1.345438134 1.37272566 1.358577016 1.392563748 1.372089225 192764370 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.899589333 0.863709239 0.864171179 0.85509624 0.821085627 0.822598083 0.836216564 0.867921245 0.793559401 0.863944867 0.860784606 112463041 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.063129409 1.006992102 1.054511099 1.045061654 1.035003599 1.048491264 1.060815544 1.060136118 1.049086903 1.03108055 1.046621051 1.03885401 1.012351667 0.969826364 1.008419708 0.99749499 1.057187369 1.013541326 374611350 amyA Mycobacterium tusciae JS617 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tusciae; 0.960137758 0.957033864 0.949813333 0.926645562 0.821437235 0.918639661 0.868199841 0.943079372 0.940742012 0.956216451 0.853833227 0.9244627 0.827398062 0.949864313 0.879293169 0.940784724 0.984978478 311104994 catechol Achromobacter xylosoxidans A8 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter;species:Achromobacter xylosoxidans; 0.847241427 0.830193877 0.825923774 0.854785181 0.819918231 0.817725057 0.797285581 0.842720083 0.872653972 0.845330086 0.868292118 0.824683697 0.853440524 0.874544249 83316848 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.04311579 1.063377676 1.029146636 1.100721118 1.088684792 0.992068763 1.012546765 1.067587871 1.131018565 1.029349936 1.02629703 1.058389198 1.029839261 0.994049159 1.007500516 0.97261541 1.040494278 1.033947049 295414694 PRI Synechococcus elongatus Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 1.28081952 1.208783869 1.229952152 1.202873179 1.21157785 1.273138839 1.188372931 1.248150886 1.235569539 1.191152611 1.188749972 1.225620229 1.189678625 1.226470856 1.252103101 1.188707824 1.264641949 1.249252366 283481786 mcra uncultured methanogenic archaeon Carbon Cycling Methane Methanogenesis superkingdom:Archaea;phylum:Euryarchaeota; 1.491569482 1.426356737 1.423263625 1.457422381 1.420783308 1.437525124 1.398870174 1.434597113 1.430637274 1.401055264 1.417293484 1.430305233 1.395475133 1.380473804 1.408733085 1.40816446 1.445221817 1.410310254 121607195 tktA Verminephrobacter eiseniae EF01-2 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 0.970165729 0.919687482 0.984290214 1.034822338 0.930630943 0.903065013 0.946716818 0.977577789 1.0271993 0.946272008 0.966408359 1.020846953 0.893798318 0.890570404 0.894536028 0.89033255 0.986351393 0.887121483 223964454 cellobiase Holdemania filiformis DSM 12042 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Firmicutes;class:Erysipelotrichia;order:Erysipelotrichales;family:Erysipelotrichaceae;genus:Holdemania;species:Holdemania filiformis; 1.056365112 1.037625429 1.087784475 1.087184457 1.079221851 1.065874333 1.071645302 1.110810418 1.129571541 1.076383456 1.071598858 1.09922685 1.033399935 1.027919732 1.059580092 1.083054288 1.07825206 1.098969766 32307983 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.954699954 0.996135576 0.963630523 0.979605003 0.928647611 0.993605676 0.87991209 0.91781577 0.861358525 1.010819924 0.916774573 0.96361734 0.922068781 0.915722286 0.883982262 0.939873322 0.928144359 0.993047679 237846121 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.038491571 1.012494904 1.001659149 1.030522561 1.052334677 1.02015375 1.03156811 1.06079933 1.026376406 1.044388731 0.979177909 1.050463378 1.020989908 1.100077962 1.004866911 1.075303003 1.020353817 1.027525624 157921071 mdh_DiC4HB Caldivirga maquilingensis IC-167 Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Caldivirga;species:Caldivirga maquilingensis; 0.802299875 0.861275696 0.849534369 0.837246443 0.824023514 0.862846884 0.810870429 0.848857589 0.819416633 0.825810922 0.825743203 0.820954238 0.83793911 0.860696302 77977649 ppx Yersinia intermedia ATCC 29909 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia intermedia; 0.845040746 0.890326379 0.811950181 0.790535322 0.828217042 0.894912992 0.849579631 0.821255591 0.850833631 0.837496253 0.834117562 0.810498592 0.848263259 0.870858619 0.886752799 66801889 narg unidentified bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.959532427 0.935626275 0.935654458 0.945140473 0.937585869 0.945834856 0.912382931 0.921105533 0.934195578 0.941213008 0.94233351 0.935523844 0.922468583 0.932066262 0.906880473 0.961626142 0.973477867 0.935546477 121605481 arsc Polaromonas naphthalenivorans CJ2 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 1.319234074 1.328605696 1.275021713 1.29131437 1.300011825 1.325815684 1.274724761 1.282752115 1.273931131 1.27559286 1.28223156 1.276585681 1.266751587 1.239755718 1.215059784 1.232645757 1.3209308 1.263912102 339287765 sqr Sulfobacillus acidophilus TPY Sulfur Sulfide Oxidation NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XVII. Incertae Sedis;genus:Sulfobacillus;species:Sulfobacillus acidophilus; 0.925424848 0.9289272 0.935587148 0.940037572 0.951002982 0.957019263 0.954321873 0.957746489 0.917314583 0.942560667 0.940236571 0.949877787 0.916016482 0.928432275 0.884171179 0.882264038 0.961526675 0.979348033 407308414 poba Nocardia brasiliensis ATCC 700358 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia brasiliensis; 1.103425025 0.973189666 1.021234233 1.042262861 1.030820765 1.030511223 1.007942793 1.04835101 1.012357482 0.967541073 0.970545401 1.01572508 0.994676049 0.970921534 0.950189048 0.981929654 0.984775383 0.98667285 385677083 amyA Amycolatopsis sp. ATCC 39116 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis; 1.151216633 1.121281557 1.110692804 1.135753274 1.130905687 1.135814626 1.122351764 1.130338787 1.148327248 1.119729213 1.116120066 1.127317912 1.079281439 1.081050265 1.056522813 1.083217184 1.133998901 1.141617742 257460378 ppk Campylobacter gracilis RM3268 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter gracilis; 1.087956459 1.074522515 1.044769663 1.133290652 1.061368988 1.070961439 1.050231051 1.079991334 1.074726225 1.043777375 1.060879463 1.073902126 1.040953356 1.013389499 1.059148564 1.028317045 1.101627995 1.043928454 90335930 mer Aurantimonas sp. SI85-9A1 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Aurantimonas;species:Aurantimonas manganoxydans; 1.11158175 1.113346515 1.084374496 1.124802197 1.08133279 1.121347604 1.078395564 1.080698006 1.049817263 1.081085535 1.057930845 1.082815174 1.064253863 1.075116917 1.062088407 1.104592931 1.113763939 1.106610152 347465154 hsp90_Stramenopiles Fucus spiralis Other Phylogenetic NA superkingdom:Eukaryota;phylum:Phaeophyceae;order:Fucales;family:Fucaceae;genus:Fucus; 0.951384206 0.991996965 0.895452 0.931300583 0.93902704 0.933781276 0.829365195 0.84233219 0.87780819 0.845588084 0.855690551 0.859286195 0.834224006 0.940057602 0.9606772 118424418 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.798591696 0.759987292 119492610 phospholipase_C_fungi Neosartorya fischeri NRRL 181 Carbon Cycling Carbon degradation Phospholipids superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 0.779047638 0.854688631 0.885005222 0.807795847 320106025 alginase Terriglobus saanensis SP1PR4 Carbon Cycling Carbon degradation Alginate superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Terriglobus;species:Terriglobus saanensis; 0.898568986 0.93377654 0.912829234 1.020706766 0.935794649 0.961729812 1.009382555 1.045026191 0.927290124 0.89247282 1.016734956 0.969139706 0.930804879 0.909592698 0.901050731 0.911440969 0.971930776 118502249 nitro Pelobacter propionicus DSM 2379 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Pelobacteraceae;genus:Pelobacter;species:Pelobacter propionicus; 0.858819275 0.816813346 0.816692124 0.861593292 0.798073501 0.829852428 0.83075686 0.846040764 0.855485369 353209791 nosz Hyphomicrobium denitrificans 1NES1 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium;species:Hyphomicrobium denitrificans; 0.928391269 0.972483572 0.888793797 0.905146234 0.949769907 0.951035497 0.926936935 0.916333665 0.960903246 0.923994943 0.937710506 0.953614546 0.900550977 0.883393563 0.954555663 0.942402413 0.92171982 1.045906733 29652656 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.165841059 1.190547879 1.144363765 1.133857878 1.130386944 1.230551663 1.115193751 1.122833617 1.142163865 1.150670676 1.131057023 1.136546758 1.126987889 1.140066658 1.126630114 1.149081774 1.18894001 1.200363214 296092782 rgl Thermobispora bispora DSM 43833 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Thermobispora;species:Thermobispora bispora; 0.994391383 1.020780667 0.975477394 1.015699601 1.000845556 1.001054968 0.955491016 1.005976411 0.996659472 0.95880013 0.963035211 0.99990035 0.941548541 0.953650765 0.927987357 0.93303181 0.994866818 0.994675375 326952758 xylj Pseudonocardia dioxanivorans CB1190 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Pseudonocardia;species:Pseudonocardia dioxanivorans; 1.125856846 1.13889797 1.087700392 1.084397802 1.115532591 1.163547877 1.086993403 1.09221736 1.098447972 1.102541327 1.097300181 1.104935909 1.090874088 1.108731466 1.099124265 1.111514721 1.130969515 1.129857757 508289 mult_ring_12DiOx Burkholderia cepacia Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 1.0035348 0.954471611 0.965611885 1.011345547 0.963850136 0.958746798 0.927212978 0.999358767 0.985506068 0.903660197 0.960269146 0.985220146 0.948439605 0.902886842 0.935647398 0.943485129 0.975726584 0.967049222 359834819 poba Actinoplanes sp. SE50/110 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes; 0.914549341 0.931555403 0.919041741 0.924785025 0.973446669 0.985344124 0.94270245 0.912340224 0.962305575 0.939491102 0.960619375 0.97706465 0.943435573 0.924370357 1.004032731 0.95012105 0.976590778 0.995721446 118470979 alkk Mycobacterium smegmatis str. MC2 155 Organic Remediation Others NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 1.222921128 1.254892333 1.205647613 1.233121692 1.204769239 1.241507072 1.194204677 1.199609339 1.196538268 1.19066447 1.214405622 1.212294259 1.178750325 1.16203384 1.154802038 1.180302875 1.220027847 1.204164555 296426473 phenol_oxidase uncultured bacterium Carbon Cycling Carbon degradation Lignin superkingdom:Bacteria; 0.954603829 0.963394466 0.951089324 0.958372566 0.915480944 0.973342109 0.933918673 0.961590152 0.953433641 0.96150923 0.931497084 0.975420795 0.940961947 0.94609685 0.886943263 0.93728217 1.000107046 0.926348558 33320472 dsrB Desulfovibrio piger Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 1.226903726 1.234359645 1.145538366 1.167899054 1.113895592 1.195545313 1.14332451 1.160789062 1.184387923 1.174604306 1.117856979 1.138129116 1.097272033 1.142072538 1.075069255 1.132238687 1.191305361 1.21263433 363719147 tfth Acetobacteraceae bacterium AT-5844 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae; 1.186122966 1.19772006 1.161827701 1.197807254 1.154137961 1.215713332 1.155516452 1.14780927 1.179149042 1.1811199 1.17871116 1.165458942 1.136196061 1.136956621 1.086813709 1.12597156 1.198103464 1.185625899 306488211 nirs uncultured organism Nitrogen Denitrification NA 0.913705907 0.938920874 0.941527626 0.944038264 0.939301555 0.92617319 0.955195236 0.895054571 0.943718983 0.944351755 0.931992246 0.932622713 0.928484896 0.887717716 0.899450077 0.918446301 0.932499369 0.935634458 323319495 arsc uncultured bacterium Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 1.237505547 1.20509536 1.162782609 1.217693227 1.152272541 1.189823128 1.134590922 1.168682189 1.189157447 1.164063402 1.161822621 1.195766103 1.127394192 1.124619904 1.121067501 1.141752391 1.208994531 1.159743357 85704480 urec Roseovarius sp. 217 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 0.820877764 0.814251099 0.792690437 0.799486379 0.855602161 0.852402036 0.79801647 0.817817421 0.824161539 0.85935739 325549158 poba Xanthomonas gardneri ATCC 19865 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas gardneri; 0.828220309 0.859881322 0.947409973 0.854200533 0.825438908 0.864330474 0.867768833 0.860636635 0.881712926 0.893532357 0.857192361 0.855795483 0.854774796 0.852603197 304313256 pgk gamma proteobacterium HdN1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 0.762324247 0.789352924 0.771297011 0.805786631 0.793017024 260414929 fthfs Silicibacter lacuscaerulensis ITI-1157 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria lacuscaerulensis; 0.966094192 0.899909471 1.030782624 0.946456623 0.963862919 1.053792754 0.964684201 0.956242634 0.958745942 0.923075216 0.937111829 0.94238857 0.86316537 0.876179973 0.909708871 0.855885693 0.874669548 0.905237435 389863775 amyA Modestobacter marinus Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Geodermatophilaceae;genus:Modestobacter; 1.245972834 1.252282707 1.247472186 1.20373959 1.192156898 1.265842678 1.173344305 1.201793876 1.215007446 1.227167085 1.201714802 1.194619559 1.177935911 1.200490622 1.187386948 1.177944759 1.242628314 1.256989128 262079045 amyA Haliangium ochraceum DSM 14365 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Haliangiaceae;genus:Haliangium;species:Haliangium ochraceum; 0.916491345 0.957157432 0.895152946 0.911788025 0.841375643 0.899897627 0.893124805 0.835342046 0.885112149 0.932251897 0.904161999 0.849711759 0.899786275 0.890237439 0.914906987 0.910242353 0.916805261 112463739 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.803485889 0.79922982 0.88282551 0.791171344 0.826238505 0.817992099 0.807869226 0.85480127 0.84506618 13422273 xylanase Caulobacter crescentus CB15 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter vibrioides; 0.771401699 0.79719719 0.795372302 0.818375233 0.846011154 0.771481861 0.788564408 0.84442512 0.780864483 0.825090609 189193473 exoglucanase Pyrenophora tritici-repentis Pt-1C-BFP Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 0.979441082 0.936357166 0.929689911 0.948642296 0.95710689 0.943956878 0.962525554 1.00237997 0.967391642 0.936741081 0.95034159 0.945369461 0.913143439 0.918988076 0.847440581 0.906049714 0.988146411 0.963397691 146284230 pgk Pseudomonas stutzeri A1501 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 0.890016211 0.907646527 0.916437015 0.910378982 0.818042523 0.892483389 0.872025871 0.899567296 0.889744337 0.861745836 0.840194169 0.919712874 0.842659187 0.856423226 0.79891501 0.87323481 0.901584777 0.879850521 86357875 amyA Rhizobium etli CFN 42 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 0.97750331 0.804194595 0.816589837 0.885811709 0.838127736 0.840756 0.838773402 0.903815066 0.862209528 0.830680836 0.881329891 0.796953452 0.791360307 0.828083077 0.82910181 0.801419689 0.945890057 0.832595 42558703 atzb Arthrobacter aurescens Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 0.995458568 1.132963271 1.015378391 1.036266659 1.003367822 1.108405756 1.062492881 0.962621987 1.025666643 1.032436945 1.037620947 0.9689322 0.978026986 1.031646316 0.93571455 1.025764999 1.042936347 1.088348344 372477147 urec Opitutaceae bacterium TAV5 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 0.980500408 0.985914902 0.879560238 0.908463853 0.907433221 0.97756858 0.894269121 0.912648521 0.959251367 0.909383039 0.894363409 0.915737714 0.881012372 0.841785878 0.904336944 0.952707581 0.956697868 0.969450414 292560799 aoxb uncultured bacterium Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 0.872377381 0.883205385 0.814107648 0.91065749 0.82636032 0.856726861 0.846714088 0.845197503 0.801694543 0.846018299 0.883851336 0.838594778 283481792 mcra uncultured methanogenic archaeon Carbon Cycling Methane Methanogenesis superkingdom:Archaea;phylum:Euryarchaeota; 1.113352633 0.988946848 1.053852254 1.098901849 1.079866813 1.058889567 1.086983502 1.074272816 1.069459313 1.07589993 1.066325488 1.06637344 1.074893245 1.103576073 1.065206405 1.037095007 1.103078402 1.006357502 261355398 mannanase Verticillium albo-atrum VaMs.102 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticillium;species:Verticillium alfalfae; 1.188300716 1.17283729 1.164821998 1.160374578 1.137868303 1.171570328 1.138206264 1.158008627 1.151773742 1.140305127 1.136274451 1.167868208 1.11949111 1.152133469 1.103540256 1.149609236 1.165600579 1.158338716 91695702 amie Polaromonas sp. JS666 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 0.854547743 0.89315963 0.874482311 0.851611153 0.847118463 0.880289352 0.821304577 0.816685986 0.86035359 0.869175945 0.885229138 0.887264439 0.891930584 57634832 hao Nitrosococcus oceani Nitrogen Nitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Nitrosococcus; 1.244060462 1.195741393 1.180512043 1.232867601 1.192475853 1.163188536 1.172614009 1.213690413 1.197742053 1.13508716 1.161470641 1.186417497 1.161397961 1.137281916 1.12289797 1.158280096 1.250847358 1.187230052 383841415 amyA Rhodococcus imtechensis RKJ300 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus imtechensis; 0.995599275 1.005753341 1.00969135 1.006066744 1.023699082 1.007157824 0.977986928 0.960988438 0.961080138 1.060603606 1.017658479 1.049401008 1.015567441 1.003184555 0.944024307 0.958059138 1.014593807 1.008755328 298246563 mer Ktedonobacter racemifer DSM 44963 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Chloroflexi;class:Ktedonobacteria;order:Ktedonobacterales;family:Ktedonobacteraceae;genus:Ktedonobacter;species:Ktedonobacter racemifer; 0.864491551 0.916491927 0.882095503 0.909901441 0.842966234 0.968646614 0.896370879 0.8567034 0.90163112 0.896014016 0.90519253 0.904250747 0.910927976 0.872987493 0.914880596 0.885905517 0.943109778 0.90168162 149145603 dmdA Roseovarius sp. TM1035 Sulfur DMSP degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 1.084957516 1.157034918 1.1203304 1.193699253 1.083348683 1.184733123 1.038670952 0.996595381 1.197705718 1.170914456 1.071996369 1.184112538 1.099580194 1.129051561 1.070368866 1.108804214 1.137336755 1.162947566 46204754 Sir Magnetospirillum magnetotacticum MS-1 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum magnetotacticum; 0.894840768 0.962384672 0.90260874 0.891473417 0.888967189 0.912751118 0.837119549 0.867569985 0.868605371 0.82674716 0.869903314 0.879909426 0.893434561 0.891469615 0.856922852 0.911294703 0.88809721 0.919310133 319800568 arsc mine drainage metagenome Metal Homeostasis Arsenic Detoxification 0.947833447 0.960734146 0.997333284 1.011472196 1.014591307 0.985557332 0.997031004 1.013725896 0.98473153 0.991834311 0.996538889 0.992064662 0.99311312 0.952348246 0.95281934 0.953377667 0.956793624 0.963713627 374998291 ben_bcla Azospirillum lipoferum 4B virulence NA NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum lipoferum; 0.95147634 1.008155625 1.001842477 1.000533809 1.005027825 0.985096414 0.942690779 0.957275502 0.963362377 0.960654217 0.914535919 0.955724096 0.964610793 0.948075708 0.927681419 0.983941541 1.010695876 0.972295933 255932209 tannase_Cdeg Penicillium chrysogenum Wisconsin 54-1255 Carbon Cycling Carbon degradation Tannins superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 0.769132439 0.847826399 0.81441277 0.808598347 0.773259633 0.854435878 384136297 ppk Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Alicyclobacillus;species:Alicyclobacillus acidocaldarius; 1.052059566 1.092925589 1.049364241 1.063238107 1.042023698 1.083047069 1.072496712 1.055373534 1.070565608 0.999736501 1.008662366 1.06456335 1.021954756 0.966900464 0.95598414 0.985853598 1.046018928 1.079471509 151302301 APS_AprB Desulfofustis glycolicus Sulfur adenylylsulfate reductase NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobulbaceae;genus:Desulfofustis; 0.840426134 0.821505405 0.84123029 0.863612903 0.861371749 0.841286509 0.829593138 0.828196174 0.876433626 0.819328653 0.814878012 0.80724172 0.79428918 0.861052097 221725632 pcpe Agrobacterium radiobacter K84 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 0.875704188 0.905889314 0.83543337 0.840850027 0.804400086 0.858071155 0.870472566 0.839085047 0.810706613 0.838261316 0.85271574 0.837009593 0.863789206 38194441 phenol_oxidase Panus rudis Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Lentinaceae;genus:Panus; 1.050117052 1.002858653 1.001449423 1.06151184 1.021585749 1.049389665 1.052778049 1.037393299 0.984538413 0.986722676 0.985783804 1.025278849 1.026115298 1.023534624 0.977909651 0.969669597 1.043219945 1.053665249 260864267 glucoamylase Ammonifex degensii KC4 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Ammonifex;species:Ammonifex degensii; 0.924634602 0.892770272 0.806109697 0.837883114 0.825786826 0.832576716 0.819466858 0.830232393 0.803035684 0.886464107 0.806612106 0.882928239 0.844568326 0.870547128 261367998 cellobiase Subdoligranulum variabile DSM 15176 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Subdoligranulum;species:Subdoligranulum variabile; 0.86630666 0.924389839 0.871921843 0.890180122 0.877741133 0.872642571 0.862529021 0.862447675 0.814560799 0.873402751 0.845087049 0.874660881 0.866814654 0.906272774 0.919388508 374848027 alkb Nocardia cyriacigeorgica GUH-2 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia cyriacigeorgica; 1.123314709 1.159622352 1.119631037 1.132222342 1.124555937 1.136999783 1.113757856 1.095295007 1.113549738 1.116934947 1.10584155 1.126160198 1.127112277 1.123668565 1.114534257 1.121459917 1.141672067 1.156712713 333483391 arsc Amycolicicoccus subflavus DQS3-9A1 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Amycolicicoccus;species:Amycolicicoccus subflavus; 0.838137177 0.887785999 0.884228106 0.852894426 0.882724364 0.875918424 0.852412293 0.853477946 0.867700059 0.869139778 0.873301669 0.816951209 0.791661468 0.855259135 0.828117889 0.822097495 0.880648462 0.880217528 295894472 phta Mycobacterium parascrofulaceum ATCC BAA-614 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium parascrofulaceum; 0.898625672 0.890811624 0.86070369 0.941123872 0.898486794 0.905255829 0.876113988 0.909165759 0.921112209 0.930633146 0.932794293 0.88081161 0.884436662 0.907333459 0.820425004 0.853515474 0.913801783 0.92071026 356690697 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.451044812 1.41856159 1.425891198 1.448530877 1.414269261 1.420264684 1.405225283 1.410165676 1.431920141 1.402878098 1.406989315 1.440986275 1.391608072 1.371598413 1.387555108 1.407182492 1.434264637 1.372014715 223961301 cellobiase Holdemania filiformis DSM 12042 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Firmicutes;class:Erysipelotrichia;order:Erysipelotrichales;family:Erysipelotrichaceae;genus:Holdemania;species:Holdemania filiformis; 0.978641221 0.987445286 0.9463434 0.999746142 0.974066008 0.970766614 0.978595403 0.937790851 0.962493657 0.948798173 0.988332175 0.965221225 0.95698771 0.94901868 0.955113263 0.99947674 0.997950003 1.004163461 115369549 chitinase Stigmatella aurantiaca DW4/3-1 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 1.068026755 0.953713593 0.9905043 1.018613962 0.919612622 0.996124663 0.956280768 0.969932992 0.964915582 0.9689105 0.965567999 0.941225004 0.940009423 0.944926304 0.92154405 0.944812738 0.998914557 0.949770944 83954038 ppx Sulfitobacter sp. NAS-14.1 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 0.967351506 0.967732613 0.900181523 0.927719903 0.890247663 0.966309096 0.875505588 0.901155249 0.909269459 0.915734321 0.924040706 0.89213226 0.895498499 0.930294785 0.886926827 0.915861457 0.966183579 0.946409263 290954984 ara Streptomyces scabiei 87.22 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces scabiei; 1.186880159 1.136159631 1.179871379 1.166140502 1.10929611 1.195008825 1.089635794 1.148471788 1.158109574 1.123045026 1.066981148 1.105644179 1.086937106 1.131062234 1.100294304 1.103751592 1.163826637 1.14689426 298346580 sqr Mobiluncus curtisii ATCC 43063 Sulfur Sulfide Oxidation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Mobiluncus;species:Mobiluncus curtisii; 1.080637567 1.084431198 1.065999267 1.06688694 1.054002282 1.057188865 1.044733098 1.028267271 1.061802052 1.02418176 1.02311045 1.043466065 1.011322406 1.009922027 1.017991412 1.005626967 1.057768591 1.047975551 219680623 PRI gamma proteobacterium NOR51-B Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Luminiphilus;species:Luminiphilus syltensis; 0.819435903 0.812466978 0.780369439 0.777444939 0.791816471 0.793641325 240247480 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.123904487 1.04251441 1.047494486 1.077355751 1.017267601 1.040698996 0.954123931 1.02237941 1.055996666 1.039393744 1.038789595 1.044820967 1.018366887 1.037783065 0.994043372 1.009955316 1.08919415 1.035453267 289558570 mer Micrococcus luteus SK58 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Micrococcus;species:Micrococcus luteus; 0.844537578 0.86948812 0.827265991 0.795056587 0.823775675 0.810625576 164455722 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 0.815153817 0.823482166 0.877618443 0.785582119 0.817417037 0.840111409 0.825497904 0.858398574 0.786855488 0.850225007 0.808673005 0.849759183 0.831297771 20803909 tktA Mesorhizobium loti R7A Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 0.823297028 0.845609791 0.880961873 0.859309399 0.891682428 0.853827147 0.939970794 0.916520568 0.871828117 0.883802901 0.8584653 0.897599976 0.82004842 0.815115306 0.814306448 0.798541287 0.871515476 0.893402949 384135247 catechol_b Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Alicyclobacillus;species:Alicyclobacillus acidocaldarius; 1.13375854 1.069823053 1.065136828 1.072586233 1.08188075 1.061026976 1.078407439 1.073625653 1.088744176 1.064629743 1.012105063 1.08119315 1.007306072 1.035710144 0.953228515 1.012859233 1.041982319 1.071597807 219739430 FBPase Gloeobacter violaceus PCC 7421 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Cyanobacteria;class:Gloeobacteria;order:Gloeobacterales;genus:Gloeobacter;species:Gloeobacter violaceus; 1.121258787 1.099373474 1.091456347 1.114829358 1.096585701 1.137040642 1.074628345 1.069972018 1.090235207 1.103931329 1.152291597 1.106541924 1.10107028 1.07869986 1.081602898 1.098659069 1.117457409 1.06301089 387139490 urec Corynebacterium pseudotuberculosis CIP 52.97 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium pseudotuberculosis; 0.832900628 0.837195821 0.816622478 0.791671015 0.861604185 0.789140941 0.829844652 0.833293225 311320315 phospholipase_A2_fungi Pyrenophora teres f. teres 0-1 Carbon Cycling Carbon degradation Phospholipids superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora teres; 0.885999851 0.88484048 0.891587483 0.893114638 0.884010236 0.867381632 0.897094467 0.829669028 0.895447381 0.869901649 0.891334474 0.852205884 0.851200613 0.805872636 0.871680702 0.852526438 0.90893029 0.922638424 335340806 FBPase Vibrio anguillarum 775 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio anguillarum; 1.440337205 1.398673362 1.384803599 1.424539585 1.379319672 1.43114375 1.367398325 1.387687598 1.390058241 1.364468988 1.379330868 1.388358059 1.384161027 1.342508249 1.368198499 1.360731924 1.445451492 1.366074212 327304240 phenol_oxidase Trichophyton rubrum CBS 118892 Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Arthrodermataceae;genus:Trichophyton;species:Trichophyton rubrum; 0.838992733 0.799017817 0.842439888 0.794094546 162072842 dsrB Thiocystis gelatinosa Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiocystis; 0.877061705 0.881394194 0.90694436 0.873643008 0.811013833 0.933612306 0.804619336 0.903059459 0.847050779 0.825822291 0.854733325 0.906794898 0.923860337 114766316 phn Pelagibaca bermudensis HTCC2601 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pelagibaca;species:Pelagibaca bermudensis; 0.894772044 0.880796056 0.883897938 0.851465848 0.878336654 0.878377946 0.854119033 0.870058245 0.838218338 0.836254566 0.915469622 0.855130457 0.840547328 0.819501717 0.828917277 0.893894939 0.895949267 255919536 acetylglucosaminidase Actinosynnema mirum DSM 43827 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinosynnemataceae;genus:Actinosynnema;species:Actinosynnema mirum; 1.112811982 1.099991636 1.082950259 1.097545146 1.083038188 1.099146263 1.087103549 1.057770132 1.096031367 1.083800863 1.108867841 1.065333689 1.066574311 1.089245809 1.042268721 1.069184477 1.098744605 1.072309209 302404032 mannanase Verticillium albo-atrum VaMs.102 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticillium;species:Verticillium alfalfae; 0.874164638 1.01111052 0.893569911 0.873060759 0.932341503 0.967080146 0.924145966 0.910137868 0.941455431 0.934036151 0.979378911 0.982574526 0.941652623 0.962015621 0.878706331 0.916194119 0.819256836 0.940388229 54633216 pcpA Sphingobium japonicum Organic Remediation superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium; 0.986926305 0.968928025 0.93833181 0.929837542 0.957731167 0.966675466 0.943616192 0.960090449 0.970403054 0.971652157 0.96531344 0.949805023 0.889192751 0.863326447 0.890244765 0.900203641 0.96198439 1.000552664 32307979 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.95699457 0.990221627 0.951858339 0.978370178 0.935200245 1.015101654 0.984603828 0.953377502 1.008067663 0.950803738 1.016273732 0.964674993 0.96984478 0.93204056 0.92924259 0.976889063 1.019902179 0.998451386 118472160 amyA Mycobacterium smegmatis str. MC2 155 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 1.331703559 1.330275374 1.306706715 1.294097988 1.28179898 1.315483078 1.291701117 1.28419495 1.296959992 1.285487106 1.321448355 1.305542962 1.279696051 1.267239262 1.277211249 1.275282806 1.314835131 1.286126315 145012251 protease_serine_fungi Magnaporthe grisea 70-15 Carbon Cycling Carbon degradation protein superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 0.772812656 0.81536994 0.843533716 0.821720972 0.868595765 0.876636343 0.771108155 0.927848059 0.848062421 116626798 pme Candidatus Solibacter usitatus Ellin6076 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 0.943075782 0.905602605 0.914057306 0.964036918 0.930456866 0.929493183 0.902913917 0.914394115 0.928127062 0.879727388 0.867884302 0.913158185 0.911122639 0.860049772 0.889083411 0.911012592 0.937959372 0.897256938 302537591 amyA Streptomyces sp. C Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 1.420189922 1.416879493 1.399968268 1.40559588 1.40467782 1.430457466 1.391635159 1.404381837 1.379976868 1.380798668 1.389710722 1.399770237 1.383050135 1.381867587 1.400544718 1.383594243 1.418948162 1.389721261 209487006 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.093251326 1.134649876 1.048044217 1.086337449 1.091424283 1.075750673 1.089511487 1.088556243 1.058514902 1.043949059 1.056336151 1.079390685 1.088221984 1.033839941 1.004872074 1.031070791 1.074276488 1.067455875 113953641 amyA Synechococcus sp. CC9311 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 1.044514555 1.058611288 1.068205045 1.029309322 1.07641887 1.063847086 1.073933378 1.053671535 1.043353814 1.082412767 1.071199482 1.063948704 1.050208875 1.020195875 1.023540709 0.964508817 1.052525505 1.080873641 145231462 cutinase Aspergillus niger Carbon Cycling Carbon degradation Cutin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 0.823360579 0.832998169 0.866406856 0.881380068 0.851580948 0.850173714 0.843853811 0.861734467 0.826342349 0.85125044 0.943556601 0.85412699 0.850365557 13242054 phta Arthrobacter keyseri Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 1.28753085 1.285148412 1.251402167 1.264748213 1.260948086 1.282715715 1.221073543 1.231367605 1.256519156 1.225297503 1.214718507 1.23126869 1.25061521 1.205433645 1.200537256 1.237782928 1.308157769 1.245332493 384465101 urec Citreicella sp. 357 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Citreicella; 1.510320324 1.355446208 1.319139565 1.341104886 1.32150135 1.352197193 1.33609958 1.33814167 1.325259854 1.317794352 1.323651007 1.335029033 1.312513046 1.304887424 1.322781603 1.324800564 1.357645219 1.312301254 254431701 Sir Cyanobium sp. PCC 7001 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanobium; 1.069629582 1.091017635 1.029271928 1.042792202 1.018590667 1.075775567 1.023229623 1.052044107 1.032811039 1.069746964 1.027251 1.034688101 1.02039791 1.025916533 1.026503007 1.027741284 1.049244643 1.086093631 109290273 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.858064583 0.845637151 0.799897435 0.809252592 321165511 xyla Granulicella tundricola MP5ACTX9 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Granulicella;species:Granulicella tundricola; 1.093639821 1.149666566 1.140436076 1.136664465 1.149964788 1.174820023 1.128299765 1.175601021 1.14439802 1.120035078 1.125124581 1.130137211 1.111910334 1.094160566 1.119864503 1.122612939 1.130318494 1.109999482 291092068 terc Edwardsiella tarda ATCC 23685 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Edwardsiella;species:Edwardsiella tarda; 0.850218943 0.840461691 0.913818853 0.837001075 0.843242653 0.826086627 0.807421357 327546255 terc Oxalobacteraceae bacterium IMCC9480 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae; 1.09299974 1.036524517 1.038580671 1.089550813 1.103240735 1.015947019 0.975373128 1.027204235 1.048807568 1.016438306 1.002576748 1.131167611 1.042489841 0.991016277 0.997374805 1.038147974 1.065687501 1.035306919 223586133 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.55856065 1.504212613 1.503979911 1.514854752 1.497024833 1.564379828 1.48719903 1.505233372 1.499933211 1.472726832 1.50758455 1.493585039 1.480867285 1.450764947 1.460658869 1.486476577 1.547971161 1.476923186 392728605 amyA Methylobacterium sp. GXF4 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 0.870259772 0.862863994 0.863931611 0.883035122 0.843797352 0.942727567 0.830341417 0.875418897 0.911294738 0.882334223 0.828252578 0.924241036 0.843876911 0.885589344 0.884273823 0.858765236 88813896 chitinase marine actinobacterium PHSC20C1 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria; 0.825522403 0.85279341 0.81964327 0.796004929 0.836387978 0.825500306 142851886 chitinase Aeromonas salmonicida subsp. salmonicida A449 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas salmonicida; 1.120157488 1.118262163 1.127977995 1.101375558 1.043626176 1.165287552 1.056268087 1.114314879 1.100582747 1.103167242 1.075244183 1.117750541 1.055132744 1.132984619 1.02930226 1.089769881 1.140164014 1.155044813 117648641 endoglucanase Acidothermus cellulolyticus 11B Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Acidothermaceae;genus:Acidothermus;species:Acidothermus cellulolyticus; 1.20632368 1.151187489 1.155790375 1.15788993 1.165165326 1.195038217 1.146258877 1.163754465 1.171520786 1.201004992 1.154108047 1.16763142 1.169612828 1.137074647 1.135094033 1.152887659 1.19924678 1.214000188 380832881 poba Kingella kingae PYKK081 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Kingella;species:Kingella kingae; 1.040443109 0.996193642 1.022879139 0.980771145 0.969255887 1.002411835 0.996743428 1.01436519 1.010832532 1.030136123 1.068540265 1.008251144 1.001009121 1.000137764 0.974315039 1.013671203 1.024084305 1.023459482 398248243 xylg Pseudomonas sp. GM78 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.855455967 0.885944716 0.850814636 0.893227768 0.879352568 0.898494045 0.863128382 0.861983923 0.902492248 0.916589664 0.879272508 0.864056176 0.886004208 0.932999477 0.930671588 0.887161415 0.893146674 0.9193196 343764817 cellobiase Gordonia alkanivorans NBRC 16433 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia alkanivorans; 0.803335345 0.841080477 170181188 alkb uncultured bacterium Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria; 1.157271267 1.128958569 1.117170334 1.125881594 1.131639593 1.178632585 1.119139106 1.073342692 1.107174232 1.100955245 1.052722659 1.103340632 1.077721298 1.116747151 1.061061335 1.049490748 1.141467038 1.14253691 398027134 tfda Novosphingobium sp. AP12 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 1.129617251 1.038772373 1.068005498 1.050887397 1.107711603 1.071532125 1.080727851 1.120546441 1.071139088 1.075294955 1.087887287 1.078591702 1.068866811 0.993832614 0.99589117 1.026038203 1.05992767 1.042916105 408446152 nitrilase Bordetella bronchiseptica MO149 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella bronchiseptica; 0.824926443 0.866186203 0.803958967 0.824744254 0.847808059 0.803217109 0.824897011 68510354 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.91280898 1.034050438 0.954830811 0.981012876 0.974295439 0.947997852 0.936037875 0.908286519 0.898520331 0.93692003 0.925888986 1.011200394 0.937735989 0.924927474 0.92602165 0.924835272 0.976284687 0.929859167 169821362 badi Burkholderia cenocepacia MC0-3 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cenocepacia; 0.931399372 0.964044727 0.933227479 0.915712589 0.876290427 0.924547558 0.875709181 0.95668322 0.965595848 0.89250944 0.903025522 0.865494962 0.828571 0.859644943 0.80823353 0.851324931 0.903998383 0.893094544 148851727 terc Bacillus sp. SG-1 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 0.925590711 0.999646901 0.937228774 0.990215327 0.931650682 0.975044689 0.941929887 0.948796614 1.031607367 1.027879299 0.963304492 1.00871635 0.928408664 0.926661839 0.85200044 0.914515631 0.969355387 0.972277261 332372299 rubisco uncultured bacterium Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria; 0.913367073 0.899804568 0.957149498 0.911768244 0.960577652 0.979695156 0.898417065 0.901883569 0.908384226 0.960936438 0.945744596 0.951236434 0.93527912 0.904158418 0.854974065 0.863050126 0.92706985 0.920682418 118571428 bphc Mycobacterium ulcerans Agy99 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium ulcerans; 0.91779961 0.939760179 0.968296703 0.916673211 0.916225458 0.906896053 0.865352878 0.873399176 0.900505887 0.924201832 1.02959026 0.906156329 0.897184435 0.942344447 0.924473633 0.866300448 0.914831608 0.95625248 196171237 urec Anaeromyxobacter sp. K Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter; 0.944010429 0.93562139 0.928674408 0.93009011 0.918668715 0.944013981 0.912762858 0.940946393 0.908512483 0.972147881 0.886176612 0.927493743 0.880624629 0.918501582 0.878032186 0.902777053 0.930020909 0.962993799 223019593 catechol Rhodococcus erythropolis Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 1.010701418 0.964197898 0.904184652 0.972377453 0.889188971 0.915838964 0.961590611 0.912271041 0.96017413 0.931456695 0.856404842 0.952787594 0.864222155 0.884620773 0.981649719 0.909739931 0.978714193 1.001401193 209966627 terc Rhodospirillum centenum SW Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum centenum; 1.127027809 0.979413589 0.948394549 0.955657395 1.002877284 1.000059376 0.932525981 0.914403191 0.913932616 0.98594659 0.948081559 0.979583712 0.970650134 0.977752123 0.886440019 0.983493805 1.021787306 1.00031403 386853130 cysJ Actinoplanes sp. SE50/110 Sulfur Reduction NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes; 1.452713879 1.368387611 1.410119319 1.446175271 1.385334616 1.461542599 1.391141362 1.42575295 1.411001319 1.380535935 1.4082152 1.404814306 1.371615794 1.375465588 1.383446225 1.414547774 1.422533133 1.352536128 371486286 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.8380935 0.820958966 0.825527719 0.814208835 91777081 cysJ Methylobacillus flagellatus KT Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Methylophilales;family:Methylophilaceae;genus:Methylobacillus;species:Methylobacillus flagellatus; 0.798564 0.869944364 0.848808132 0.856438145 0.860218742 0.856448473 0.81298372 0.811261032 0.848063293 0.856383193 0.847662743 86137506 TIM Roseobacter sp. MED193 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 0.926756161 0.92581249 0.893474094 0.900166915 0.900283312 0.952867056 0.902248058 0.869331666 0.870457137 0.883928992 0.897686274 0.863016687 0.846180906 0.852923774 0.921363679 0.92797978 345871771 arylest Thiorhodococcus drewsii AZ1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiorhodococcus;species:Thiorhodococcus drewsii; 0.774353735 0.808672351 395493701 B_lactamase_A Sphingomonas sp. PAMC 26617 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 0.860243082 0.884291979 0.847784818 0.809273552 0.846188197 0.828039266 0.831637426 0.892468451 0.853620763 409934644 nfsa_2 Bacillus bataviensis LMG 21833 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus bataviensis; 0.914173778 0.895121096 0.925209166 0.971187733 0.900860416 0.882679193 0.944870689 0.945247035 0.937833947 0.848234136 0.91842682 0.910580548 0.885563431 0.836122258 0.898965285 0.85469525 0.95953944 0.920451979 358635879 nasa Azoarcus sp. KH32C Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 1.061857912 1.046514824 1.041930355 1.070428728 1.009178856 1.071682976 1.027753062 0.999408136 1.017289914 1.017435364 1.019484553 1.014871899 1.029036668 1.004150776 1.001346991 0.984895848 1.074159579 1.034955888 357426045 tktA Azospirillum lipoferum 4B Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum lipoferum; 1.547933225 1.487635125 1.513187596 1.466849016 1.533541428 1.499417778 1.489281774 1.504183216 1.466090603 1.496763223 1.487517879 1.505769938 1.469509554 1.449152344 1.503647622 1.480119949 1.482254797 1.473578701 43823426 nhh Agrobacterium tumefaciens Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium; 1.119727035 1.110895182 1.049627304 1.067131935 1.08697898 1.112535319 1.103760196 1.083877278 1.107296508 1.13706317 1.077913096 1.097535541 1.053045648 1.074063576 0.97601452 1.060120131 1.059024191 1.097981043 21674530 ppx Chlorobium tepidum TLS Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobaculum;species:Chlorobaculum tepidum; 1.004809608 1.074927402 1.029120652 1.043856989 1.048722516 1.024462968 1.056319302 1.008682919 1.023910169 1.021395721 1.036776597 1.047176286 1.024336853 1.012169266 1.005242491 1.034623132 1.018977388 1.054620096 339503543 FBPase Roseobacter litoralis Och 149 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter litoralis; 1.07237864 1.071285183 1.06366716 1.072984972 1.057235365 1.069531054 1.013833339 1.030871579 1.071426351 1.025637895 1.039196612 1.055721668 1.022225341 1.023072826 0.999245517 1.04183622 1.0765153 1.072344129 1944410 amyA Geobacillus stearothermophilus Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 1.193485654 1.229653598 1.196744635 1.169490493 1.223986441 1.206352823 1.188265997 1.183203465 1.201072664 1.138038457 1.208870672 1.207232992 1.144568437 1.134571809 1.083929933 1.150644821 1.166421376 1.178047875 374667093 exaa(moxf) Burkholderiales bacterium JOSHI_001 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales; 1.091550278 1.074060274 1.100908378 1.094646323 1.115802706 1.114873657 1.081833353 1.047954507 1.079186025 1.055599587 1.137418008 1.119072331 1.118492315 1.042813388 1.10792064 1.120959775 1.116895586 1.090708509 334684258 xyla Microlunatus phosphovorus NM-1 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Microlunatus;species:Microlunatus phosphovorus; 0.917940124 0.893194277 0.891879448 0.898046743 0.917069024 0.927275041 0.900280946 0.890794183 0.872432107 0.905124619 0.90155667 0.902590934 0.841507133 0.830975407 0.821754482 0.856379731 0.916889033 0.94609767 62131454 ppk uncultured bacterium Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria; 1.13255378 1.101082725 1.078074805 1.106920041 1.06645562 1.107135663 1.080221344 1.11265911 1.119527965 1.095826405 1.173824281 1.097683123 1.059910873 1.061437014 1.066380157 1.099224562 1.112763443 1.110999278 225386957 amyA Clostridium asparagiforme DSM 15981 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium asparagiforme; 0.966190851 1.007974125 0.950923375 0.997792468 0.959240141 1.000394613 0.965010491 0.941998767 0.942054149 0.990215161 0.921688976 0.985743701 0.895191073 0.960282683 0.877642758 0.888612656 0.983267794 0.989981987 145569487 narg Pseudomonas stutzeri A1501 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 1.065324056 1.052007263 1.04212538 1.066813658 1.049866161 1.055518624 1.039774832 1.019554937 1.092336451 1.01189263 1.012494698 1.045669637 1.030403111 0.964443047 0.990319144 1.00499771 1.072917124 1.035076833 407428084 nosz Nitratireductor indicus C115 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Nitratireductor;species:Nitratireductor indicus; 1.190122658 1.190214675 1.165332144 1.213233374 1.212071386 1.204546223 1.189635098 1.20293924 1.195479625 1.181546557 1.178368252 1.205634081 1.173790495 1.169920716 1.200454576 1.191045609 1.196109484 1.185763431 169239146 chnb Mycobacterium abscessus Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 1.080301732 1.049947682 1.090523421 1.100733932 1.073570203 1.082436336 1.078869936 1.087979844 1.075048514 1.094081159 1.058412012 1.077591005 1.056843894 1.050710979 1.012233844 1.017198941 1.082374386 1.083681351 214042734 aln Roseobacter sp. GAI101 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 0.809791677 0.814350804 0.816408823 0.833598007 0.813029218 0.83968254 0.75236265 0.810728681 255326903 amyA Rothia mucilaginosa ATCC 25296 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Rothia;species:Rothia mucilaginosa; 1.011716984 1.018530942 1.068360225 1.020140184 1.01286909 1.035303691 0.97518508 0.979164595 1.005602843 1.003415309 0.993236457 1.012224783 0.996665268 0.996537326 0.966974346 0.985673623 1.047330955 1.032698127 149375960 alginase Marinobacter algicola DG893 Carbon Cycling Carbon degradation Alginate superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter algicola; 0.884564705 0.871587508 0.859004082 0.888205217 0.917227123 0.873590838 0.887536036 0.918208183 0.854071911 0.918865477 0.907277023 0.920401539 0.880171777 0.824874235 0.875951591 0.840511999 0.874584722 118592975 xyla Stappia aggregata IAM 12614 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 1.176071157 1.18214915 1.122402598 1.145510062 1.104786852 1.148818159 1.102925109 1.121377302 1.146697561 1.138731999 1.077976232 1.124156912 1.078624077 1.106714954 1.073835703 1.099429538 1.169188892 1.184104505 150029838 tktA Sinorhizobium medicae WSM419 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 0.884751271 0.859683115 0.879057521 0.850900884 0.90425236 0.859908606 0.841493515 0.862583637 0.879311085 0.880485618 0.856716262 0.910330789 0.861419856 0.808820356 0.843158756 0.805170038 0.880616913 0.852429689 297150879 RgaE Streptomyces pristinaespiralis ATCC 25486 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces pristinaespiralis; 0.803329591 0.852153883 0.855334571 0.796754808 0.812421836 0.826083218 0.866915238 0.812393601 393761545 one_ring_12diox Alishewanella agri BL06 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alishewanella;species:Alishewanella agri; 1.038360025 1.081270153 1.023796662 1.01105881 1.023349502 1.04525058 0.952101167 0.955123558 0.991510656 0.977950632 0.983246192 0.990082228 0.96828884 0.972054832 0.959625811 0.957392529 1.030010689 1.027580402 365331114 catb Bradyrhizobium sp. STM 3809 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.817863509 0.850150529 0.832968638 0.828408917 0.790285075 0.838399414 0.78914898 0.836506402 0.828522384 0.826907062 0.806330356 0.84913058 0.826184258 0.865133922 359787952 mer Mesorhizobium alhagi CCNWXJ12-2 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium alhagi; 0.909250703 0.95854279 0.874744714 0.849629785 0.855526542 0.906796481 0.877118093 0.857164319 0.898196959 0.971973383 0.817482929 0.848654988 0.846492662 0.952700536 0.826751743 0.885521892 0.959031934 407275259 mult_ring_12DiOx Rhodococcus sp. P14 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 0.934297418 0.974285316 0.944220045 0.932524839 0.92920601 0.936595745 0.920884366 0.913823438 0.910107909 0.929009067 0.928384414 0.937091954 0.914410551 0.867966034 0.830330391 0.922901676 0.935743428 0.927326907 94983181 silicon_transporter NA Metal Homeostasis Silicon Transport 0.98794974 0.97634588 0.93568853 0.978593546 0.954441358 0.976698817 0.934946033 0.907782769 0.9685386 0.888354953 0.891894321 0.953550185 0.916187969 0.855029817 0.87772302 0.909090104 0.997441003 0.976623818 157911982 ppx Dinoroseobacter shibae DFL 12 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 1.063278648 1.072577106 1.067144071 1.085077367 1.056011474 1.058384242 1.029553196 1.045961358 1.034049113 1.040748431 1.046229882 1.055259072 1.027890532 1.020585599 1.034377405 1.009982329 1.062926063 1.052281783 29466090 norb uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.038082632 1.033221673 1.016408843 1.073427967 1.020121215 1.063473178 1.038397523 1.064001898 1.062539551 1.011843182 1.01949701 1.034590702 1.00731884 1.02086601 1.042519094 1.026617443 1.058276812 1.05590163 308226366 amyA Oscillochloris trichoides DG6 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Oscillochloridaceae;genus:Oscillochloris;species:Oscillochloris trichoides; 0.849333461 0.81829324 0.864979157 0.888335983 0.809334043 0.85918786 0.87517481 0.837680116 0.83413486 0.880718287 0.854698275 0.809687757 0.817176517 338756784 fthfs Roseobacter litoralis Och 149 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter litoralis; 0.942245552 0.928062917 0.951070725 0.982071626 0.963767624 0.927521271 0.870372588 0.963755559 0.963714834 0.908800636 0.942819261 0.976197974 0.90535594 0.858967183 0.853747532 0.892689951 0.961208935 0.942003284 67156658 urec Azotobacter vinelandii AvOP Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Azotobacter;species:Azotobacter vinelandii; 0.923778186 0.978953189 0.945008692 0.945516718 0.948732175 0.948028934 0.922767368 0.906403307 0.988915721 0.89966608 0.941706628 0.914346733 0.872755405 0.919296038 0.896025394 0.817000919 0.933890772 0.964471307 395499456 nitro Pseudomonas sp. PAMC 25886 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.802978291 0.822583036 0.821418551 0.836653635 32307915 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.258481205 1.229587766 1.237805523 1.249398179 1.237609551 1.26251089 1.238199651 1.267626371 1.23653351 1.228519129 1.22260427 1.249106679 1.215344102 1.198821403 1.198761703 1.232286813 1.245234342 1.239334186 380881214 APS_AprB Thiorhodovibrio sp. 970 Sulfur adenylylsulfate reductase NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiorhodovibrio; 0.902745069 0.970975445 0.912580384 0.912701388 0.88277606 0.914420248 0.90375089 0.878929127 0.92198278 0.933469794 0.912404217 0.908943718 0.92398677 0.887070422 0.881670299 0.876766176 0.926181454 0.927879448 284008729 terc Arsenophonus nasoniae Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Arsenophonus; 0.840560029 0.841771254 0.797296285 0.836738928 0.818446915 0.80303456 0.82821694 0.812694039 0.839718888 0.801440267 0.833007954 10175887 amyx Bacillus halodurans C-125 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus halodurans; 1.150887975 1.131953017 1.123251563 1.151058248 1.121956786 1.118387646 1.078754347 1.081195154 1.097075427 1.129521711 1.145636602 1.13087757 1.094525485 1.089654905 1.04529075 1.096410654 1.120385489 1.108265504 340346913 rgl Prevotella dentalis DSM 3688 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella dentalis; 1.166505431 1.102273523 1.112349743 1.096645582 1.065552296 1.032212007 1.072784988 1.051136558 1.121598111 1.081706879 1.071820577 1.071454321 1.05826072 1.024533509 1.011654016 1.003529546 1.176593869 1.114653421 209869148 dsra uncultured marine bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.386247626 1.329734557 1.357860825 1.33894068 1.322485307 1.35763818 1.294249216 1.341156496 1.341918697 1.331030952 1.337746918 1.35120747 1.305346277 1.321162049 1.325872823 1.327217235 1.335555768 1.311886545 348593388 fthfs Oscillibacter valericigenes Sjm18-20 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Oscillospiraceae;genus:Oscillibacter;species:Oscillibacter valericigenes; 1.132398566 1.113753898 1.127805646 1.148006228 1.144248019 1.152605513 1.161256947 1.134452778 1.14781824 1.138335716 1.146154859 1.15716425 1.149853269 1.09930983 1.132204031 1.103982137 1.151656707 1.06687647 297625298 norb Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium;species:Propionibacterium freudenreichii; 0.842082509 0.846930488 0.809050639 0.887357583 0.870492357 0.897876455 0.856194239 0.856108402 0.87597754 0.827243835 0.857346884 0.892081465 0.934755219 151302158 APS_AprB Desulfovibrio sp. JD160 Sulfur adenylylsulfate reductase NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 0.927254732 0.89214954 0.929426922 0.920344468 0.931270356 0.897770705 0.952793844 0.929284264 0.955209331 0.907850226 0.916992592 0.94527033 0.827157363 0.813548228 0.842680865 0.84399756 0.937851672 0.92844021 291340945 ppx Streptomyces ghanaensis ATCC 14672 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces ghanaensis; 1.208038876 1.205948453 1.167181304 1.210777499 1.172811085 1.207000853 1.194088931 1.170461965 1.161876893 1.149580548 1.179724073 1.191607741 1.175997905 1.159853885 1.161333202 1.18741746 1.188141512 1.171166785 68164738 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.800820895 0.801413107 126355810 poba Pseudomonas putida GB-1 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 0.896946133 0.857239786 0.85885233 0.878736947 0.993187069 1.092994301 1.008002759 0.849938146 0.890579377 0.915423828 0.924786037 0.833490876 0.878689751 0.863723575 0.835743474 0.947849415 0.908572554 0.889634128 164456010 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 0.966416677 0.912986747 0.956480064 0.939946046 0.964084098 0.93781981 0.946008778 0.970891035 0.965039612 0.947306304 0.95525154 0.972339706 0.964322898 0.924845613 0.886932525 0.90075098 0.955597852 0.965534417 119355978 dsra Chlorobium phaeobacteroides DSM 266 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeobacteroides; 0.998782502 0.905083781 0.949678218 0.950888942 0.958039652 0.95003611 0.989269425 1.018521131 0.932667015 0.938080888 0.941821196 0.970297999 0.940817022 0.878951397 0.896936201 0.929232816 0.939691894 0.944142736 119674208 AACT_DiC4HB Pyrobaculum islandicum DSM 4184 Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum islandicum; 0.902644845 0.92504712 0.953324528 0.994986045 0.941961815 0.958476279 0.926395886 0.944626479 0.934842989 0.93719826 0.8998526 0.942461016 0.912206773 0.892332196 0.89110887 0.885850194 0.951540657 0.957513171 301109691 pectin_lyase_Oomycetes Phytophthora infestans T30-4 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;order:Peronosporales;genus:Phytophthora;species:Phytophthora infestans; 0.804970248 0.853401604 0.833502771 0.839892799 0.861258602 0.858630867 0.840352605 0.776111336 0.878920312 0.82314831 0.793926842 0.820375699 0.808565002 302684505 xylanase Schizophyllum commune H4-8 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 0.871976753 0.921306467 0.830070709 0.908898732 0.878044604 0.907350701 0.850657063 0.84730079 0.875652884 0.837697349 0.903721327 0.846054348 0.850842343 0.859883459 0.88227562 0.838853144 0.904123264 0.902926215 149176730 CsoS1_CcmK Planctomyces maris DSM 8797 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Planctomyces;species:Planctomyces maris; 0.779107501 0.84454156 0.795954043 0.821707207 0.845480364 0.902225668 0.877883714 0.815756525 0.861115068 0.840845082 0.856682873 0.860839616 0.964182656 0.912457477 0.951650908 153009769 urec Ochrobactrum anthropi ATCC 49188 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum anthropi; 0.907069139 0.914697495 0.918340705 0.918884343 0.837055545 0.896588873 0.869340841 0.922921184 0.922670101 0.918630294 0.886996518 0.882218985 0.82475135 0.884542726 0.819521906 0.8834997 0.934236669 0.933123034 355361449 APS_AprB Desulfotomaculum gibsoniae DSM 7213 Sulfur adenylylsulfate reductase NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum gibsoniae; 0.97085991 1.035964711 0.81484861 0.850954895 0.907303025 0.831688979 0.857807273 0.888968375 0.839973482 0.801755679 0.833142874 0.85570753 0.905342748 78101823 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 1.314262743 1.267695633 1.280420567 1.283123167 1.249199066 1.281849146 1.260875129 1.278255386 1.271471479 1.256746412 1.25801197 1.286854087 1.239689063 1.246265421 1.263679427 1.263780028 1.277987734 1.248634115 254416328 ccmL Microcoleus chthonoplastes PCC 7420 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Coleofasciculus;species:Coleofasciculus chthonoplastes; 0.964792845 0.939111627 0.934907961 0.944197502 0.94663496 0.947724941 0.946634382 0.938776546 0.949156249 0.929291092 0.952840033 0.934272826 0.937545699 0.920672843 0.874616842 0.905601872 0.954139689 0.939805341 229760704 amyA Streptosporangium roseum DSM 43021 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 1.135718879 1.102229545 1.064701574 1.132042788 1.081344464 1.119234914 1.08682664 1.098036643 1.097610901 1.08110357 1.079802484 1.103438273 1.065036556 1.04804017 1.083465441 1.093452854 1.113134808 1.066245196 224027963 aps_apra uncultured gamma proteobacterium Sulfur adenylylsulfate reductase NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 1.460102392 1.399770492 1.431915205 1.44048666 1.426572054 1.44397807 1.429232309 1.455363692 1.430729757 1.405309255 1.418692836 1.427386596 1.408744925 1.373365678 1.400074341 1.404451232 1.416693973 1.387357892 158523656 dsra uncultured bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.779839312 0.833680824 0.879898488 0.893551023 0.913201796 0.860254892 0.87182165 0.923854502 0.900532472 0.909447744 0.866084227 0.898321305 0.858017492 0.842373211 0.859787569 323365690 nifh uncultured microorganism Nitrogen Nitrogen fixation NA 0.871995426 0.93220784 0.929888999 0.912730784 0.870022455 0.948998185 0.873775947 0.932114157 0.928483531 0.920271232 0.866291379 0.884444087 0.858182625 0.93982684 0.884543759 0.897323939 0.96575224 0.953774678 169242811 cutinase Mycobacterium abscessus Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 1.175894817 1.127545256 1.102587647 1.182877037 1.149424807 1.16836016 1.153848697 1.174069195 1.152298727 1.127057344 1.144542923 1.160044452 1.129437298 1.145796454 1.129725217 1.156881195 1.147324373 1.121698853 156232244 mcl Roseiflexus castenholzii DSM 13941 Carbon Cycling Carbon fixation 3-hydroxypropionate bicycle superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus;species:Roseiflexus castenholzii; 1.040038306 1.025775341 1.024509716 1.043263624 1.051517532 1.006245268 1.015983421 1.029757285 1.041304524 1.018026363 1.033881844 1.058171988 1.022343979 0.990927913 0.983154431 0.974217194 1.060021139 1.01059302 72121359 phn Ralstonia eutropha JMP134 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 0.997602829 0.941556517 1.00638753 1.007255008 0.918387395 0.968921436 0.945505088 0.963418338 1.009757373 0.937570973 0.963994493 0.979385566 0.941395643 0.947767766 0.921214035 0.962884124 1.011549619 0.959713608 108759728 chitinase Myxococcus xanthus DK 1622 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus xanthus; 1.286986271 1.198645848 1.263428438 1.245684903 1.250578 1.266753277 1.26918689 1.272317798 1.26451385 1.202416576 1.240328276 1.254233623 1.277830798 1.211092238 1.250166899 1.237092306 1.233396931 1.224783265 170077910 mer Synechococcus sp. PCC 7002 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 0.926097096 0.972801188 0.897648982 0.988383048 0.912818541 0.927360802 0.915997796 0.945100567 0.964265009 0.928177181 0.915090148 0.943785183 0.859025157 0.900364631 0.868838815 0.881745041 0.938501217 0.983720614 126629761 nosz Marinobacter sp. ELB17 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter; 0.964913548 0.956080008 0.963430963 0.991734262 0.962511649 0.951362451 0.933509784 0.963030304 0.981541905 0.922439247 0.943677159 0.980833001 0.974675736 0.894933286 0.917519224 0.900168325 0.992440302 0.962617171 119899342 ben_bcla Azoarcus sp. BH72 virulence NA NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 1.049257874 1.072706064 1.04218429 1.025001381 1.011804972 1.104771443 1.026543169 1.01805508 1.040490515 1.059753162 1.005057794 1.002996474 0.968171681 0.993950195 0.938290665 1.007209816 1.007132114 1.022527983 50119278 alginase Pectobacterium atrosepticum SCRI1043 Carbon Cycling Carbon degradation Alginate superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium atrosepticum; 1.234968479 1.262712844 1.22339072 1.253169465 1.240805696 1.250148001 1.236505413 1.23746274 1.230080005 1.221476021 1.198206845 1.261970251 1.172049473 1.171817688 1.143582779 1.211475645 1.222867601 1.235057956 219949992 ppx Methylobacterium nodulans ORS 2060 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 1.379517096 1.349318921 1.359479454 1.355899529 1.353172972 1.392665973 1.344611467 1.353227328 1.336494597 1.329214741 1.350223853 1.339786066 1.332150953 1.30915269 1.308952091 1.329454483 1.375099206 1.332855973 336320808 exoglucanase Cellvibrio] gilvus ATCC 13127 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas;species:[Cellvibrio] gilvus; 1.129240007 1.109447644 1.093885589 1.091169051 1.063599772 1.099123389 1.052049605 1.060573047 1.065534825 1.083240671 1.053355059 1.039147149 1.048817234 1.064994782 1.042203833 1.074692052 1.091851156 1.0985321 312270114 endoglucanase Ralstonia solanacearum Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 1.235328483 1.181923733 1.205747038 1.229997088 1.168793603 1.215034331 1.165899136 1.187869148 1.213166017 1.164681035 1.200669135 1.166093326 1.179913749 1.152213369 1.149018079 1.166068222 1.228886696 1.169016259 379708665 chnb Nocardia cyriacigeorgica GUH-2 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia cyriacigeorgica; 0.976494256 1.018253636 0.993831323 1.012066388 1.050859709 1.013808407 1.026792303 1.013244976 0.986167404 1.02225336 1.008221635 1.013235463 0.999033333 0.996156853 1.03364279 0.994007981 0.969488014 1.014668296 183176426 mer Mycobacterium marinum M Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium marinum; 1.534094024 1.492840649 1.512978269 1.519233026 1.48869889 1.534106417 1.509520084 1.531993952 1.499911898 1.479384846 1.500357634 1.51908228 1.485847963 1.457094305 1.486547077 1.502769051 1.510194236 1.471549387 335865805 chitinase Shewanella sp. HN-41 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella; 0.832393909 0.861785788 0.834388316 0.843015621 0.864595559 0.813360882 0.844046581 0.850239658 0.829780643 0.813811484 0.901950551 0.8837358 146740636 rubisco Cyanobium sp. PCC 7001 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanobium; 1.158180799 1.161640659 1.173164619 1.177156693 1.134488521 1.219013451 1.133475215 1.142304048 1.153959241 1.184880884 1.112279943 1.153494101 1.163244417 1.167491678 1.237734629 1.152802479 1.197408227 1.188309879 88930670 amyA Acidothermus cellulolyticus 11B Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Acidothermaceae;genus:Acidothermus;species:Acidothermus cellulolyticus; 1.146343534 1.135857268 1.126225561 1.120528381 1.109851471 1.141945775 1.076787824 1.075526259 1.101733843 1.071674779 1.081381076 1.094698241 1.107456294 1.077941019 1.055268021 1.099763212 1.148948817 1.104193973 260893699 rubisco Ammonifex degensii KC4 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Ammonifex;species:Ammonifex degensii; 0.845009694 0.802166397 0.76387404 0.806391485 309812166 amyA Dermacoccus sp. Ellin185 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dermacoccaceae;genus:Dermacoccus; 0.790487921 0.84514539 0.835828974 0.817005523 0.851421191 0.81245988 0.829308684 0.801434737 0.829514785 0.810181887 0.801864029 0.831444548 56314767 ebdabc Azoarcus sp. EbN1 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 0.848479495 0.796479471 0.837494694 0.835781434 352106609 arsm Halomonas sp. HAL1 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas; 1.043053011 1.063161844 1.015223739 1.061421597 1.021543862 1.060670549 1.062783297 1.037322576 1.038230411 1.026831161 1.00576211 1.061918672 1.004008079 1.008569988 0.983247666 1.009524898 1.060109098 0.995484129 339323784 tfth Cupriavidus necator N-1 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 1.293736191 1.202715294 1.250404469 1.253142226 1.271580981 1.236167959 1.261904876 1.243638151 1.263694137 1.260391228 1.281131258 1.243186466 1.245678817 1.221861723 1.236953712 1.234062902 1.265694124 1.225204312 282899150 amyA Cylindrospermopsis raciborskii CS-505 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Cylindrospermopsis;species:Cylindrospermopsis raciborskii; 1.007772454 1.063309454 1.024945701 1.126412015 1.012309517 1.094288568 1.02331723 1.008242629 1.024151516 1.049217019 1.153211111 1.008765366 0.996729963 1.010877381 1.019793484 1.014127835 1.03683146 1.030456456 115491969 phospholipase_C_fungi Aspergillus terreus NIH2624 Carbon Cycling Carbon degradation Phospholipids superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 0.805477505 0.789172973 0.851859609 0.798803037 339323858 xlnd Cupriavidus necator N-1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 0.987642626 0.967746447 0.974402312 0.975074757 0.947018586 0.981921299 0.973381633 0.984207347 0.90800528 0.953176079 0.980720313 0.963849741 0.972406158 0.912189721 0.919355757 0.899660877 1.011919744 0.987160399 145231208 tannase_Cdeg Aspergillus niger Carbon Cycling Carbon degradation Tannins superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 0.952317579 0.973626687 0.880448353 0.952788334 0.906270303 0.934447243 0.879261075 0.943319956 0.935788239 0.891130418 0.916617805 0.908055647 0.842837464 0.869857323 0.921751131 0.973545658 0.941117096 120325980 quinoline Marinobacter aquaeolei VT8 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter hydrocarbonoclasticus; 0.979369857 0.992741198 0.924477313 0.939640354 0.980910583 0.969492641 0.982479163 0.963771513 0.95642102 0.987288174 0.978558089 0.967121045 0.872401871 0.939349174 0.784527565 0.941650561 0.882001768 0.886769462 119479235 nitrate_reductase Neosartorya fischeri NRRL 181 Nitrogen N Assimilation NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 1.082066015 1.065430973 1.057457334 1.075948122 1.15896958 1.133507557 1.103983806 1.096701237 1.059251922 1.126957089 1.093116277 1.061939379 1.051053618 1.102246577 1.007998178 1.041192902 1.050035755 1.072788693 218675774 aps_apra gamma proteobacterium symbiont of Robbea sp. 1 SB-2008 Sulfur adenylylsulfate reductase NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 0.796733105 0.804181306 0.811402476 0.822561308 0.820642263 0.804761057 0.81404523 0.813266867 74038418 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.837843058 0.861299127 0.821469972 0.806166964 0.79532126 0.840674732 0.810183468 0.807953993 0.859577465 158112437 acetylglucosaminidase Frankia sp. EAN1pec Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 0.882557296 0.936050879 0.871130186 0.884422197 0.866488521 0.855457233 0.872262061 0.893424807 0.882423202 0.877782671 0.895668582 0.904981123 0.900563119 0.860442184 0.868361982 0.892994405 0.91679145 357938482 FBPase Burkholderia sp. YI23 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 1.040918071 0.972086773 0.909603587 0.940058537 0.926575106 0.869902454 0.856294558 0.862352078 0.911891815 0.933515402 0.912140037 0.895455706 0.859364609 0.855967761 0.831391949 0.983335187 0.892397192 0.976143834 89044975 ara Oceanicola granulosus HTCC2516 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola granulosus; 1.072842991 1.113009187 1.008137784 1.117822905 1.102900307 1.062534693 1.088419371 1.092875409 1.07482681 1.103866827 1.010378703 0.987394181 1.075231009 1.003613008 0.948436276 1.033671514 1.097901539 1.053002413 389864501 catechol_b Modestobacter marinus Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Geodermatophilaceae;genus:Modestobacter; 1.298858095 1.27683173 1.254622487 1.248721888 1.25565799 1.286449821 1.236440436 1.227375317 1.26475555 1.25050963 1.257696984 1.243911305 1.239142209 1.224142364 1.236604954 1.194151466 1.287172569 1.266152891 260218054 ppx Cronobacter turicensis z3032 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Cronobacter;species:Cronobacter turicensis; 1.017549883 0.976778636 0.928840459 0.98830377 0.921153232 0.969057871 0.961881355 0.970538239 0.959483718 0.946092277 0.964298745 0.94279003 0.868892928 0.907402989 0.872032135 0.863894217 0.970044311 0.974957507 337747757 pme Paenibacillus mucilaginosus KNP414 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 0.92007666 0.81832227 0.858965064 0.862600448 0.88008732 0.812998857 0.8235358 0.869342858 0.872342264 0.833293046 0.847409618 0.892072296 0.814914184 0.81836488 0.833594474 0.851065983 0.867849962 0.937244556 296164898 limeh Mycobacterium parascrofulaceum ATCC BAA-614 Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium parascrofulaceum; 1.119567428 1.054789506 1.096753632 1.081791565 1.033905106 1.036923652 0.861067658 0.983761946 1.092169014 1.060092608 1.050475342 1.074545097 1.05307106 1.061134026 0.956945665 1.02525791 1.098340157 1.092203027 91229318 GAPDH_Calvin Vibrio alginolyticus 12G01 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio alginolyticus; 0.810778624 0.807616437 197625436 ppk Cyanobium sp. PCC 7001 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanobium; 0.833127401 0.944206703 0.911552278 0.875961821 0.859943414 0.879835345 0.834289831 0.771367845 0.861908184 0.80880408 0.803125001 0.826532015 0.817123318 0.826629427 0.857713874 0.881720045 113953433 endoglucanase Synechococcus sp. CC9311 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 0.823021611 0.839709586 0.822204386 0.857642762 0.867467125 0.847288937 0.818762197 317052920 nhh Pantoea sp. At-9b Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 0.853321935 0.825962462 0.922334145 0.911371347 0.904588705 0.895462649 0.898685134 0.878054384 0.852814219 0.973634688 0.933397386 0.882789874 0.89907105 0.823078406 0.841113123 0.897043262 170605698 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.874870343 0.977444872 0.91060489 0.946688598 0.912562363 0.937287315 0.906996575 0.915841737 0.936756593 0.909495454 1.0218915 0.949061501 0.936380141 0.900426498 0.875228687 0.887664596 0.953711911 0.952117657 330468620 amyA Verrucosispora maris AB-18-032 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Verrucosispora;species:Verrucosispora maris; 0.985715893 1.012919395 0.992746685 0.935832631 0.881081406 0.968206628 0.898824115 0.933486884 0.971001443 0.979435308 0.935030432 0.96524819 0.940581214 0.933882317 0.884746121 0.925660587 0.945037048 1.00030373 343523044 amyA Actinomyces sp. oral taxon 175 str. F0384 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 175; 1.489157004 1.45108527 1.442416996 1.436846715 1.429730845 1.482627131 1.43112777 1.454357141 1.434290903 1.430898107 1.428313716 1.441633207 1.438566973 1.395605565 1.420557809 1.413463861 1.467939966 1.422474862 326798504 acetylglucosaminidase Sphingobacterium sp. 21 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Sphingobacterium; 0.87573753 0.868137007 0.833647306 0.847406294 0.84138542 0.825111013 0.836859258 0.841033436 0.79403798 0.824820162 0.869540192 0.826674832 354585539 xylanase Paenibacillus lactis 154 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus lactis; 0.9807018 0.9965331 0.946670889 0.991004767 0.999017034 1.022407108 0.977842053 0.973505566 0.999178168 0.985648279 0.943405643 0.969799818 0.976051766 1.000149867 0.952674629 0.96715733 0.988148614 0.995943317 326947322 adhC Thermoproteus uzoniensis 768-20 Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Thermoproteus;species:Thermoproteus uzoniensis; 1.406301072 1.399234252 1.369459136 1.392266812 1.393202626 1.397900845 1.376180397 1.392321763 1.371773188 1.357991362 1.374414391 1.385257138 1.362396799 1.347664763 1.385425383 1.368430272 1.402274942 1.364477414 302432123 xylc Streptomyces sp. SPB78 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 1.365862062 1.314980757 1.316437748 1.313186981 1.316140576 1.3525803 1.295192447 1.295700967 1.286154049 1.320534072 1.31486162 1.296700629 1.257626222 1.251111957 1.22061296 1.288399898 1.288989645 1.277908436 333486221 cutinase Mycobacterium sp. JDM601 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 1.042501328 1.021110584 0.995541911 1.030694544 0.982987599 1.034188071 0.948853502 1.014524231 1.009306674 1.005220825 0.980793884 0.978254486 0.970744984 0.998486195 0.949314195 0.969769891 1.026159673 1.008780778 87280986 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.996488717 1.028558862 0.995533667 1.035347443 0.915424043 0.977228466 0.952861642 0.914245111 0.991668343 0.997159332 0.951092166 0.977713941 0.95662584 0.973153836 0.904788337 0.94013983 0.998095509 1.000562673 115360324 badh Burkholderia cepacia AMMD Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ambifaria; 1.225527483 1.225041587 1.222402552 1.222125846 1.226062304 1.254424932 1.195503825 1.228244987 1.18766592 1.204390754 1.210520573 1.232266761 1.207510342 1.197563156 1.217429709 1.203832169 1.227958811 1.20234989 373096639 arsc Cupriavidus basilensis OR16 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus basilensis; 0.858897131 0.849366285 0.852146454 0.844218222 0.854249577 0.816497631 0.805506983 0.899849879 0.856911926 0.810766772 0.81521411 0.861896929 0.827572849 0.860619867 56799065 catechol_b uncultured bacterium Organic Remediation Aromatics Other aromatics superkingdom:Bacteria; 0.864975457 0.83715486 0.871522621 0.887887917 0.877967038 0.858263579 0.886938982 0.916818802 0.900670652 0.854017851 0.896341619 0.88653959 0.813545991 0.802405796 0.817494817 0.892986109 0.904982356 0.926121333 374580161 arra Desulfosporosinus youngiae DSM 17734 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfosporosinus;species:Desulfosporosinus youngiae; 0.880383181 0.846042947 0.899274862 0.901651428 0.846877178 0.873017624 0.864908303 0.927938147 0.896272562 0.882505009 0.879192613 0.808674532 0.84557016 0.853391418 0.856294772 0.853859341 361052733 TIM Sulfobacillus acidophilus DSM 10332 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XVII. Incertae Sedis;genus:Sulfobacillus;species:Sulfobacillus acidophilus; 0.81599208 0.84781177 0.803074043 0.856920483 0.858125536 0.853446071 0.892863068 0.858235742 0.842375668 0.858676466 0.839766906 0.847914252 0.838945938 0.852652301 0.852659188 0.804160839 0.842866612 386690232 alkb Micromonospora lupini str. Lupac 08 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Micromonospora;species:Micromonospora lupini; 1.018917628 1.05251864 1.056511264 1.014700611 1.034296791 1.078743563 1.021348209 0.993530686 0.992927678 1.026961328 1.026762062 1.035100523 1.040092218 1.037638463 1.02216856 1.034602385 1.057881197 1.086552457 152026694 nosz Anaeromyxobacter sp. Fw109-5 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter; 0.951985118 0.918634304 0.954060608 0.957683541 0.821400624 0.937634547 0.92682111 0.929345636 0.949834307 0.946038714 0.889521686 0.947506186 0.871333443 0.86027465 0.882069051 0.868020892 0.936485742 0.958373958 20906878 codh Methanosarcina mazei Go1 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosarcinaceae;genus:Methanosarcina;species:Methanosarcina mazei; 0.932702921 0.851900981 0.895271967 0.934559522 0.871152829 0.807608037 0.847783238 0.899094245 0.835009049 0.870353626 0.827836505 0.874680258 0.817652344 0.880085569 0.865906877 71383866 narb uncultured bacterium Nitrogen Assimilatory N reduction NA superkingdom:Bacteria; 0.992970462 0.95839733 0.94614219 0.994485329 0.896229027 0.999179642 0.966874996 0.96846107 0.971769956 0.948724664 0.941928476 0.964127822 0.906365608 0.912811699 0.866467927 0.911753734 0.960035321 0.967061733 199593971 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.948278567 0.955087344 0.919065784 0.932492868 0.863377889 0.933482809 0.903419918 0.923747984 0.962708798 0.9390604 0.906510121 0.913631516 0.864468453 0.908355693 0.843268797 0.869845372 0.92444866 0.945601769 211592468 cellobiase Penicillium chrysogenum Wisconsin 54-1255 Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 0.929369517 0.872599572 0.84795911 0.94003239 0.879940041 0.883142821 0.87176449 0.858653999 0.930482367 0.855122887 0.861997943 0.885201342 0.835449598 0.862249015 0.862911218 0.929348369 0.845108347 28900726 arylest Vibrio parahaemolyticus RIMD 2210633 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 0.896587052 0.829462205 0.87805091 0.88170583 0.843794497 0.85332776 0.886708376 0.851295748 0.853852738 0.84528225 0.896392818 0.83651199 147676385 gdh Pelotomaculum thermopropionicum SI Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Pelotomaculum;species:Pelotomaculum thermopropionicum; 0.919128255 0.808514268 0.890754323 0.832989741 0.867416976 0.844791883 0.831128871 0.849426484 0.854111344 0.854669236 0.885838766 0.904002718 0.829321312 0.882935144 0.865480807 0.784928043 0.927240586 225045471 ccmL Clostridium asparagiforme DSM 15981 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium asparagiforme; 0.803328278 0.803703406 377816191 cysJ Pantoea stewartii subsp. stewartii DC283 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea;species:Pantoea stewartii; 1.014864821 0.961003742 0.968471655 1.014361149 0.970692036 0.975414638 0.975565181 0.962732276 1.021173508 0.990883136 0.971848027 0.997560511 0.91332304 0.933303935 0.894775954 0.942281455 0.994392431 0.979082973 68164636 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.982415932 0.930805015 0.976584094 0.995045886 0.982730549 0.913984585 0.982001538 0.974892839 0.995424889 0.965713241 0.917440902 0.99260384 0.944372592 0.883353823 0.954728166 0.951305351 0.994579068 0.966233572 146192104 rubisco Bradyrhizobium sp. ORS278 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.806935161 0.834107028 0.806957525 0.806631903 0.819696453 0.856744753 0.838389557 26278740 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.302026189 1.280317085 1.245654495 1.314334305 1.234244892 1.288060118 1.224366155 1.242703931 1.248008378 1.24671953 1.213051095 1.246002524 1.215524074 1.22641255 1.205536262 1.247514112 1.311876566 1.266410957 118619182 linb Mycobacterium ulcerans Agy99 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium ulcerans; 0.935744467 0.923937654 0.919929878 0.916327598 0.89006231 0.96428114 0.905799145 0.908912322 0.896607524 0.905414294 0.884665117 0.899023059 0.886825859 0.889936363 0.850361807 0.92267162 0.91593568 114570980 tktA Maricaulis maris MCS10 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Maricaulis;species:Maricaulis maris; 0.893214537 0.88117019 0.894797294 0.920886259 0.847836053 0.887397836 0.840830148 0.873159342 0.912123272 0.902754706 0.863837783 0.790188219 0.853549715 0.813625693 0.872808671 0.911126619 0.880269498 393758866 arsc Alcaligenes faecalis subsp. faecalis NCIB 8687 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Alcaligenes;species:Alcaligenes faecalis; 0.876739007 0.952003547 0.916136588 0.902939683 0.919058868 0.870983161 0.876572068 0.882613539 0.915248923 0.88565411 0.915883907 0.883925106 0.861647221 0.886131739 0.889128527 0.867372856 0.916038246 385737666 nhh Bradyrhizobium sp. WSM1253 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 1.00708906 0.993840754 0.968083554 1.016740091 1.016177834 0.988974824 0.967309902 0.952948158 0.934193236 0.986357605 0.951584174 0.993176162 0.947232045 0.955397999 0.919306006 0.967860411 1.007750182 0.998610335 133910050 hbh Saccharopolyspora erythraea NRRL 2338 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 0.973260969 0.948139286 0.997906445 0.925286033 0.961302084 0.923514131 0.91806576 0.882892876 0.959666601 0.990415951 0.963189858 0.961190165 0.963437699 0.953940617 0.946108395 0.89410908 0.986084957 0.998503709 83026036 alkb uncultured bacterium Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria; 1.287828537 1.3255487 1.268413346 1.297231888 1.338400121 1.393300295 1.296992677 1.346585637 1.317220845 1.281681749 1.292247839 1.265281237 1.25906423 1.284788563 1.217896283 1.291584725 1.318995608 1.301853259 170605570 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.982760157 1.009129417 1.011471306 1.007189876 0.984342611 0.991424702 0.981561811 1.008248651 1.013510865 1.038038275 0.997921785 1.015404139 0.939454589 0.971223374 0.938315897 0.982208214 0.969248052 1.026215692 256037710 chitinase Chitinophaga pinensis DSM 2588 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;genus:Chitinophaga;species:Chitinophaga pinensis; 0.933660157 0.876071244 0.904514523 0.967240418 0.87519063 0.914478125 0.89490719 0.912808049 0.898747345 0.912150394 0.876069538 0.926132516 0.827058343 0.874693845 0.842091871 0.855075522 0.949217421 0.924963595 387889117 catb Escherichia blattae DSM 4481 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Shimwellia;species:Shimwellia blattae; 0.926913964 0.90341547 0.897186164 0.879973145 0.908710646 0.863543623 0.896273395 0.883202132 0.899882816 0.887971406 0.886152538 0.909057998 0.841849256 0.867794672 0.821446419 0.843047042 0.906290085 0.930552608 347731629 dsra Desulfovibrio sp. A2 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 1.153569202 1.124876748 1.10482037 1.164435076 1.114791322 1.14640936 1.115893643 1.123703168 1.116180041 1.10827375 1.106877947 1.125414605 1.116787705 1.081260779 1.11121476 1.121798894 1.164718275 1.115933474 94313984 tfth Ralstonia metallidurans CH34 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 1.19335331 1.218196454 1.196472541 1.201061821 1.191553558 1.224814285 1.194706402 1.216459382 1.173784012 1.199061675 1.197470767 1.197450029 1.159417183 1.167773176 1.123746046 1.170176558 1.183749276 1.216093819 116208710 protease_aspartate_fungi Chaetomium globosum CBS 148.51 Carbon Cycling Carbon degradation protein superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 1.068843061 1.073940122 1.027862951 1.046269173 1.029895051 1.049559373 1.014676368 1.021719287 1.042366655 1.03206056 1.03013698 1.03689556 1.020413606 0.989101901 0.979961514 1.002751585 1.057027644 1.068438321 227163910 ppk Proteus mirabilis ATCC 29906 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Proteus;species:Proteus mirabilis; 0.851033739 0.912862767 0.821253145 0.881693188 0.86544385 0.833626614 0.833837877 0.882028186 0.867626049 0.883342611 0.844042895 0.91861835 0.862807514 49239781 PRI Bartonella quintana str. Toulouse Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bartonellaceae;genus:Bartonella;species:Bartonella quintana; 1.192136802 1.116107987 1.180699437 1.19312761 1.170621061 1.152963282 1.123234419 1.198463926 1.188365211 1.134912246 1.152204418 1.18240512 1.121673624 1.127862894 1.116030714 1.138228712 1.1650961 1.131479089 377659993 fccab Thiorhodovibrio sp. 970 Sulfur Sulfide Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiorhodovibrio; 0.809235967 0.850027325 0.881278885 0.869675856 0.871317071 0.837753327 364570035 tehb Yokenella regensburgei ATCC 43003 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yokenella;species:Yokenella regensburgei; 0.830425719 0.930970376 0.807755011 0.897777831 0.851342903 0.86516807 0.819582154 0.841579684 0.862212496 0.824530548 0.815121171 0.856902137 0.846248447 0.854158153 0.847130945 0.818542076 0.881932614 0.909620609 227822248 PRI Sinorhizobium fredii NGR234 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium fredii; 0.910783575 0.882087539 0.86664424 0.94030552 0.934871736 0.908403131 0.867847835 0.833528166 0.893487621 0.813690105 0.817079281 0.819027306 0.926920485 0.934965873 397890598 oxdb Pseudomonas chlororaphis subsp. aureofaciens 30-84 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas chlororaphis; 1.089882346 1.011566172 1.051005712 1.084938988 0.954640109 1.021678652 0.980870754 1.008894347 1.082526884 1.026261205 1.01994485 1.01990078 0.972082197 0.978968518 0.956246091 0.983712801 1.088732825 1.032171671 323312081 amyA Vibrio brasiliensis LMG 20546 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio brasiliensis; 1.041114909 1.044572554 1.14213559 1.082189972 1.078070096 1.125031632 1.083023549 1.064223289 1.039502719 1.062372385 1.073579238 1.108918126 1.042400845 1.065293902 1.03274491 1.129511151 1.059189229 1.021644164 327480842 cysI Pseudomonas stutzeri DSM 4166 Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 1.028809623 0.975786275 1.008166481 1.028823685 0.986466629 1.00763553 0.991829863 0.997464001 0.993158414 1.014520323 1.003968069 1.001467554 0.976784653 0.963900775 0.970594655 0.99635163 1.0228556 0.999871475 365810716 poba Streptomyces cattleya NRRL 8057 = DSM 46488 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces cattleya; 0.992263677 0.982837465 0.916044319 0.949666743 0.962031293 1.00272251 0.90982609 0.929982774 0.99744742 0.982760246 0.927013522 0.963591475 0.9774164 0.952847571 0.954007295 0.917460511 0.999738638 0.99556701 118424305 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.888426065 0.872528433 0.785977751 0.814403087 0.77376422 0.803758783 393720804 xyla Sphingomonas echinoides ATCC 14820 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas echinoides; 1.025442563 0.979267571 1.010637048 1.024923165 1.063275227 1.007721566 1.061837541 1.022200514 1.002917752 1.041182896 1.003234867 1.042839466 0.997894523 0.961013776 0.958124699 0.989559473 1.013983746 0.983087446 336453287 hao Helicobacter bizzozeronii CIII-1 Nitrogen Nitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Helicobacter;species:Helicobacter bizzozeronii; 1.505009111 1.465770406 1.462728461 1.482944268 1.470478771 1.500807948 1.479279794 1.468726792 1.464859292 1.434192476 1.471886661 1.482599742 1.446932211 1.435649991 1.476151348 1.474493519 1.472755935 1.43198061 356690759 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.776138992 0.795659366 0.762733448 0.831834509 0.795153397 0.76211299 363987226 mcra uncultured archaeon Carbon Cycling Methane Methanogenesis superkingdom:Archaea; 0.784702573 0.895364439 0.7685785 0.796361732 0.814017503 0.849653249 0.82917426 0.794307296 0.866438806 0.856256704 34335348 nahf Pseudomonas sp. ND6 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.943460703 0.844453706 0.900614445 0.971812427 1.00256928 0.901292988 0.97110014 0.967227728 0.974051099 0.86370645 1.036095129 1.004312082 0.876501551 0.812027127 0.88177613 0.877322303 0.922840125 0.918181943 407776331 poba Nitratireductor pacificus pht-3B Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Nitratireductor;species:Nitratireductor pacificus; 1.152804736 1.154199448 1.133842318 1.165054783 1.1341045 1.098592478 1.082588546 1.112135357 1.183334058 1.14464456 1.149130338 1.153171289 1.091247666 1.111981936 1.126538894 1.106729068 1.145670777 1.075818373 108757374 nrfa Myxococcus xanthus DK 1622 Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus xanthus; 0.842643165 0.843051947 0.841412821 0.822166733 0.811914947 0.846394001 0.83740349 0.793732019 0.862135078 0.801734767 0.884179456 0.836352357 0.84065595 0.867422528 0.862634209 302885356 pec_Cdeg Nectria haematococca mpVI 77-13-4 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Nectria;species:Nectria haematococca; 0.905425776 0.818445306 0.839527582 0.861096174 0.892335571 0.844247692 0.868822971 0.857518109 0.835668584 71383812 nasa uncultured bacterium Nitrogen Assimilatory N reduction NA superkingdom:Bacteria; 0.80218504 0.991990598 0.791876806 0.964315851 0.987154859 0.844771843 386788555 limeh Mycobacterium sp. MOTT36Y Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 0.938058671 0.958875996 0.945485118 0.968253877 0.912057564 0.99067169 0.879446133 0.891377273 0.91416128 0.905280881 0.934802877 0.951191864 0.868922754 0.918853439 0.951855729 0.880713168 0.945629328 0.936705313 295799325 cysJ Myxococcus xanthus DK 1622 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus xanthus; 1.090419861 1.070031928 1.097607326 1.105507655 1.032212907 1.086338263 1.02876483 1.049258128 1.066839234 1.067932844 1.056797322 1.072390973 1.053656254 1.049414821 1.036231642 1.05109984 1.078393901 1.085646457 156055520 phenol_oxidase Sclerotinia sclerotiorum 1980 Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Sclerotinia;species:Sclerotinia sclerotiorum; 0.883240731 0.794968254 0.857445169 0.947730508 0.913817637 0.893596602 0.917303962 0.912382262 0.938312422 0.951773239 0.868309268 0.936010878 0.866424658 0.925203996 0.906510769 0.9625638 0.918494397 0.906723214 238577397 cutinase Moniliophthora perniciosa FA553 Carbon Cycling Carbon degradation Cutin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Marasmiaceae;genus:Moniliophthora;species:Moniliophthora perniciosa; 0.81047893 0.860342885 0.902649439 0.818627317 0.843872277 0.809440067 0.808148082 0.890853651 0.872116743 146307643 chnb Pseudomonas mendocina ymp Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas mendocina; 1.013641722 0.974989764 0.954476619 0.994040089 0.946981127 0.973495716 0.954341585 0.952071538 0.984429057 0.974065446 0.947358084 0.958906678 0.945921085 0.948430847 0.942083422 0.954475374 1.001734849 1.004724579 374986455 chitinase Streptomyces bingchenggensis BCW-1 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces bingchenggensis; 1.087632445 1.046492628 1.006153053 1.052690945 1.029295188 1.040350945 1.020459142 1.00014647 1.009612092 1.013175209 1.010733014 1.041731686 1.002203058 1.00620584 0.983154031 1.036993345 1.047345985 1.045931508 313896322 nrfa Selenomonas sp. oral taxon 137 str. F0430 Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas sp. oral taxon 137; 0.97646375 1.011784724 0.99225844 1.013037688 1.013324211 0.955949464 1.014931259 1.054288596 1.035951229 0.97751723 0.946579698 1.0155159 0.959030863 0.941141218 0.90530959 0.935795241 0.982289395 0.973701837 251771950 mer Leptospirillum ferrodiazotrophum Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Nitrospirae;class:Nitrospira;order:Nitrospirales;family:Nitrospiraceae;genus:Leptospirillum; 0.906915353 0.982708996 0.958908151 0.907824983 0.944180376 0.951601235 0.926543894 0.876089961 0.953786827 0.903349705 0.883343137 0.907813545 0.909876907 0.97177092 0.90748 0.91908137 0.968759707 0.953615681 258619103 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.838807538 0.84722993 0.8560483 0.814681787 0.813686281 0.855627795 0.846049063 0.799898526 0.855599598 0.819936251 357935304 dehh109 Burkholderia sp. YI23 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 1.366897125 1.315202958 1.314381355 1.349436683 1.286871558 1.33277308 1.318720741 1.324306995 1.329744313 1.300638996 1.290642621 1.319751776 1.281396055 1.297406786 1.312921567 1.309364461 1.333596767 1.270403734 298282880 cysJ Neisseria sp. oral taxon 014 str. F0314 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria sp. oral taxon 014; 0.910321034 0.91253232 0.848577909 0.901241578 0.873274621 0.903126561 0.853586091 0.855229968 0.903821637 0.858282738 0.866837107 0.841101382 0.864120052 0.872987745 0.880375464 0.934318478 0.912709086 150392261 CsoS1_CcmK Alkaliphilus metalliredigens QYMF Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Alkaliphilus;species:Alkaliphilus metalliredigens; 0.775418414 0.843145016 0.789184736 0.860204244 0.845078089 0.785926172 384217184 exaa(moxf) Bradyrhizobium japonicum USDA 6 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 1.200845295 1.204273518 1.183101802 1.169823925 1.177565857 1.198858328 1.160118065 1.133961426 1.148782454 1.19453631 1.188059605 1.191634087 1.137188893 1.131966772 1.121402434 1.14843438 1.188366718 1.203135948 84517005 pcag Loktanella vestfoldensis SKA53 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Loktanella;species:Loktanella vestfoldensis; 1.215508177 1.225206524 1.223811946 1.221496093 1.252357489 1.176456968 1.195436191 1.209681207 1.260464303 1.247527637 1.231285097 1.244742275 1.184297166 1.139309416 1.13773896 1.177706448 1.180919779 1.207290695 16329365 ccmM Synechocystis sp. PCC 6803 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechocystis; 0.974050612 1.004522794 0.959098377 1.041084776 1.002901926 1.057089203 0.976962277 0.990189721 0.942487731 1.032177579 0.976615275 0.99439628 0.998095268 0.957689408 0.958538316 1.013469415 0.999271896 0.99105703 167586903 atzb Burkholderia ubonensis Bu Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ubonensis; 1.361816188 1.29379686 1.316756047 1.324176118 1.298843283 1.325643201 1.297990382 1.31056652 1.312876409 1.298173689 1.275795024 1.290449485 1.280688158 1.249751789 1.261581917 1.263521523 1.336885882 1.286249795 70673031 nifh uncultured nitrogen-fixing bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.863143457 0.899092304 0.81186214 0.815578183 0.822925949 0.889044818 260651540 cellobiase Streptomyces scabiei 87.22 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces scabiei; 0.879389734 0.856814517 0.839793086 0.938312044 0.886247355 0.834684769 0.809460169 0.848649886 0.859962737 0.835347103 0.877679699 0.845654056 0.87790921 110819439 cdh Rhodococcus sp. RHA1 Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 1.372466837 1.317126816 1.325299501 1.354306597 1.289576483 1.340070855 1.29081991 1.322679091 1.324097113 1.318628538 1.307691388 1.341173785 1.285287981 1.298518114 1.272958117 1.300378687 1.370702688 1.319481558 357012514 atza Paenibacillus elgii B69 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus elgii; 0.874286606 0.922097985 0.887385056 0.906960908 0.871135299 0.84233809 0.859501356 0.896836678 0.875247332 0.931024128 0.82793027 0.92242141 0.844297124 0.86886453 0.856274805 0.856137712 0.898122408 0.963157177 116634791 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.990375675 0.956451747 1.031749476 0.944242205 0.96616085 0.985345743 0.944834729 0.970995369 0.994114689 0.983812771 1.020479245 0.998787172 0.965566508 0.909958857 0.954945219 0.957997618 1.010510183 1.016450778 170751160 atzd Methylobacterium radiotolerans JCM 2831 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium radiotolerans; 1.112774658 1.105526766 1.090545094 1.106144821 1.085724154 1.095641461 1.094757839 1.091140032 1.095883487 1.103067669 1.108252924 1.135841251 1.074031873 1.046602022 1.076144032 1.076071787 1.098789117 1.091914015 335420498 amie Salinisphaera shabanensis E1L3A Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Salinisphaerales;family:Salinisphaeraceae;genus:Salinisphaera;species:Salinisphaera shabanensis; 1.079983596 1.095826932 1.025726364 1.073608178 1.047778594 1.082343123 1.018653115 1.048075931 1.065049109 1.061327734 1.052041152 1.035239444 1.005478955 1.037146955 0.990882795 1.0347317 1.091961559 1.094802385 340810391 amyA Thermococcus sp. 4557 Carbon Cycling Carbon degradation Starch superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Thermococcus; 0.92214447 0.891288312 0.89326669 0.951262537 0.903504603 0.887014607 0.909880789 0.902956555 0.913608089 0.849782632 0.879859646 0.878390289 0.863022156 0.837027823 0.874148732 0.844092709 0.916699635 0.8966285 260535205 acetylglucosaminidase Prevotella veroralis F0319 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella veroralis; 0.929625094 0.944354236 0.877759625 0.917685405 0.87523913 0.987824423 0.896031088 0.891234549 0.923789116 0.977443154 0.847718194 0.893651545 0.853759308 0.910321917 0.824946826 0.866830148 0.941369735 0.970824632 15425969 phdci Pseudomonas fluorescens Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.782341124 0.818479909 0.833686804 0.826504356 0.881161677 0.817356888 0.830843116 0.83473588 0.797541828 0.818907469 0.816664625 0.821067346 0.839406174 91777385 tpha Burkholderia xenovorans LB400 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 1.089710216 1.005305012 1.044590952 0.987072698 1.040965703 1.090947067 0.980057272 0.98044476 1.003137857 0.960245554 1.081238042 0.963222404 1.022611598 0.934980865 1.018558527 0.98544141 1.130218894 1.074362807 387968667 one_ring_23diox Pseudomonas stutzeri TS44 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 1.168830407 1.164351742 1.120631541 1.14377072 1.124995431 1.154146022 1.082816316 1.126373317 1.112042854 1.135084319 1.10399259 1.130294171 1.111978928 1.117973061 1.091298839 1.11970092 1.160639575 1.161993669 324999954 vgb Pseudonocardia sp. P1 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Pseudonocardia; 0.882479855 0.958780318 0.937016309 0.912456254 0.920225015 0.923994745 0.857389653 0.90743301 0.856943398 0.825451877 0.86232764 0.860462592 0.884383844 0.833943327 0.8948538 0.860450687 0.90490293 0.898133151 151281305 atzb Janthinobacterium sp. Marseille Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Janthinobacterium; 1.139888267 1.133677969 1.099174047 1.125809226 1.090045511 1.128464528 1.051325419 1.049822598 1.108505799 1.053782903 1.034899746 1.060580362 1.065996228 1.053188601 1.044710526 1.043136444 1.111757736 1.107473006 359782745 poba Pseudomonas psychrotolerans L19 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas psychrotolerans; 0.861706881 0.851832441 0.848905195 0.825261538 0.78339706 0.805296963 0.799676414 0.808680201 0.840591232 0.817847795 0.77385504 0.826266645 0.845791647 0.8877989 37726807 dsra uncultured prokaryote Sulfur sulfite reduction NA 0.856459701 0.882474089 0.894403143 0.885635069 0.871567881 0.827166782 0.851327998 0.887324762 0.899126566 0.846984324 1.173963562 0.810184461 0.817224026 0.870709681 0.807474612 194719498 chitinase Collimonas fungivorans Ter331 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Collimonas;species:Collimonas fungivorans; 0.935879132 0.907306654 0.934350156 0.887905025 0.901218512 0.923749561 0.896965262 0.904916285 0.918374941 0.913863449 0.952913684 0.922829535 0.886888767 0.893004428 0.887118876 0.893667164 0.921084038 0.945691172 261371594 mannanase Fibrobacter succinogenes subsp. succinogenes S85 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Fibrobacteres;class:Fibrobacteres;order:Fibrobacterales;family:Fibrobacteraceae;genus:Fibrobacter;species:Fibrobacter succinogenes; 1.068428044 1.041201761 1.034599617 1.197448853 0.995690576 1.078261052 1.045675602 1.067502157 1.007392951 1.000655194 1.018962673 1.036482984 0.967975974 1.013747375 0.948968161 1.022505812 1.043378988 1.054993767 364570977 cda Yokenella regensburgei ATCC 43003 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yokenella;species:Yokenella regensburgei; 0.868796199 0.890876847 0.859967565 0.857068731 0.862396026 0.880657257 0.852908838 0.883622331 0.817400584 0.825244303 0.888917219 0.905455882 404401593 cmci Pseudomonas fuscovaginae UPB0736 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fuscovaginae; 1.217453756 1.17923095 1.206769187 1.194933889 1.171226749 1.216326155 1.173988734 1.16682895 1.195752261 1.181669382 1.143221324 1.168849163 1.164419649 1.129825629 1.160631608 1.155291347 1.207840719 1.163550338 383776212 amyA Actinoplanes missouriensis 431 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes;species:Actinoplanes missouriensis; 1.193447608 1.19720018 1.155883042 1.178013957 1.179444837 1.225254924 1.172676211 1.154412548 1.157971825 1.186740065 1.187915887 1.180722215 1.13884528 1.130694001 1.086241155 1.131331037 1.174418225 1.168078956 72160988 amyA Thermobifida fusca YX Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Thermobifida;species:Thermobifida fusca; 0.968601439 0.939110533 0.908617412 0.989316086 0.875835313 0.930137847 0.923890331 0.94669775 0.953619292 0.926816323 0.902152265 0.930087564 0.904241207 0.888016503 0.831275675 0.888257643 0.961018643 0.963092323 310794274 phospholipase_C_fungi Glomerella graminicola M1.001 Carbon Cycling Carbon degradation Phospholipids superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Glomerellaceae;genus:Glomerella;species:Glomerella graminicola; 0.862613413 0.813698077 0.81386922 0.817310723 0.807911959 0.808821613 0.795655348 0.825153911 392721731 catb Novosphingobium sp. Rr 2-17 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 0.968485327 1.01011257 0.977582696 0.969517369 0.981665708 0.988470746 0.987072329 0.960733819 0.950714494 0.969176466 1.000603753 0.984008155 0.965121599 0.958814019 0.97259879 1.004695076 1.000014383 0.985485876 13958044 nirs Azospirillum lipoferum Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum; 0.940764002 0.823570431 0.838742799 0.822636591 0.850941062 0.912079943 0.847932543 0.879104564 0.822465214 0.826387795 0.854971103 0.856972164 220923109 ara Methylobacterium nodulans ORS 2060 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 0.982516384 0.976522345 0.98064635 0.995413262 0.982325996 1.028910175 0.949326634 0.931254646 0.957229263 0.930564289 0.944555757 0.926701246 0.9598059 0.942251916 0.947624172 0.970255879 0.987532348 1.004370653 76577536 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.816978869 0.802326457 0.820628532 0.82381192 0.812966967 0.859779911 0.854501455 342796238 arylest Vibrio scophthalmi LMG 19158 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio scophthalmi; 0.828681952 0.813750133 0.818511148 0.789233216 0.787961416 0.840265804 139004122 nifh uncultured nitrogen-fixing bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 1.120141106 1.02990127 1.049722054 1.099457194 1.050784547 1.061554386 1.038715388 1.083946016 1.094491065 1.028332934 1.045788503 1.094947978 1.025081034 1.011849717 1.08521545 1.034835528 1.091141596 1.050424082 16506204 nasa uncultured marine bacterium Nitrogen Assimilatory N reduction NA superkingdom:Bacteria; 1.059326184 0.940933013 1.124576566 1.126266229 1.018031326 1.016255898 1.046189953 1.087650668 1.116494024 1.027542574 1.033437925 1.088598967 1.058327025 1.000447687 1.000055744 1.028064678 1.104424248 1.017960648 358636026 PRI Azoarcus sp. KH32C Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 1.117348362 1.065026389 1.11268944 1.141386752 1.109532377 1.125507633 1.131167423 1.114433014 1.110863825 1.095732228 1.094560761 1.099596078 1.08837498 1.053379227 1.064615624 1.078112452 1.129389506 1.064135093 403728430 bphF1 Gordonia rhizosphera NBRC 16068 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia rhizosphera; 0.901885334 0.851107646 0.886812532 0.849816914 0.841810717 0.829241287 0.831709794 0.857712469 0.833228565 0.870768596 187920807 tktA Burkholderia phytofirmans PsJN Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 1.437334215 1.455198708 1.364792357 1.422464151 1.320930267 1.441498433 1.309084861 1.220315289 1.374726935 1.411239414 1.38483276 1.433241858 1.360060163 1.393933447 1.31101235 1.330867711 1.415883063 1.425244722 388530103 arsc Tistrella mobilis KA081020-065 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Tistrella;species:Tistrella mobilis; 0.879163258 0.840549972 0.799540563 0.82668238 0.868840844 0.850753853 0.827935769 319899385 pgk Bartonella clarridgeiae 73 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bartonellaceae;genus:Bartonella;species:Bartonella clarridgeiae; 0.940590419 0.97681861 0.927947884 0.966720318 1.007831598 0.976287219 0.952659902 0.970715138 0.915315962 0.936439723 1.006699343 0.983792447 0.966508271 0.942329617 0.925144834 0.93746355 0.951755467 0.97828253 396931180 bphd Rhodococcus sp. JVH1 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 1.420352866 1.363750252 1.38690015 1.368497053 1.42194498 1.441834149 1.388287011 1.292651578 1.309173897 1.416168281 1.363503351 1.36455551 1.376137589 1.365810264 1.409134243 1.350663127 1.379379691 1.366541242 113477304 ccmL Trichodesmium erythraeum IMS101 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Trichodesmium;species:Trichodesmium erythraeum; 0.808722053 0.806025057 147829482 phn Clavibacter michiganensis subsp. michiganensis NCPPB 382 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Clavibacter;species:Clavibacter michiganensis; 1.144710346 1.130148747 1.101246283 1.129016303 1.146821557 1.138087001 1.119292709 1.139836649 1.137391248 1.112945593 1.076572245 1.151485678 1.083512708 1.070020703 1.048955497 1.073214651 1.112433563 1.127936132 386274919 cysJ Methylophaga sp. JAM1 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Methylophaga; 1.015555485 1.00146299 0.986396747 1.003600146 0.968152809 0.997359169 0.983698687 0.956922134 1.047809205 0.996073497 0.996158393 0.993320218 0.943925591 0.946580877 0.918429646 0.977168565 0.992319092 1.023049333 333392830 endoglucanase Enterobacter hormaechei ATCC 49162 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter hormaechei; 0.813912861 0.934604532 0.857971484 0.829402569 0.892493467 0.857983901 0.825878301 0.838607344 0.877062015 0.877255815 0.943860687 115358086 pcpe Burkholderia ambifaria AMMD Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ambifaria; 0.847492977 0.957036755 0.885594832 0.854981393 0.895432845 0.879263659 0.816812955 0.902662056 0.830638054 0.911168935 0.859167228 0.854546798 0.844284745 0.908044175 0.863565704 0.89719539 326197649 bphd Gordonia neofelifaecis NRRL B-59395 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia neofelifaecis; 0.774542388 0.810517016 0.84348377 0.825563281 120594350 mult_ring_12DiOx Polaromonas naphthalenivorans CJ2 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 0.849747127 0.882048792 0.861455828 0.859969526 0.839864122 0.818656346 0.851100022 0.861250439 0.819232421 0.838900602 0.847380958 0.83819135 0.818261836 0.821821065 0.899802009 2660680 catechol_b Burkholderia cepacia Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 0.993672257 0.914545386 0.97867116 1.025657688 0.90856062 0.878945458 0.90667257 0.968644707 0.996216408 0.911402334 1.070806683 0.956213804 0.903071329 0.849973498 0.88817837 0.903583024 0.985919598 0.920614726 8515781 mult_ring_12DiOx uncultured bacterium Organic Remediation Aromatics Other aromatics superkingdom:Bacteria; 0.944980452 0.92782297 0.975615763 0.978034346 0.940593469 0.933464627 0.910113976 0.915883514 0.945584216 0.965135195 0.916212156 0.93840531 0.905191576 0.917508677 0.871501914 0.959974291 0.959078959 0.959885685 383780287 amyA Actinoplanes missouriensis 431 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes;species:Actinoplanes missouriensis; 0.952236485 0.942225814 0.949603565 0.932112303 0.910947066 0.905339686 0.902364329 0.939027696 0.940083011 0.868047637 0.914778251 0.941065814 0.83805131 0.819930706 0.84564301 0.893630003 0.933246023 0.921338475 354567553 arsc Fischerella sp. JSC-11 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Cyanobacteria;order:Stigonematales;genus:Fischerella; 0.864395018 0.829381009 0.849752457 0.943782631 0.889033128 0.874741384 0.873383952 0.889486431 0.90666748 0.863854958 0.874473898 0.88102255 0.862096935 0.838568374 0.811457054 0.842354404 0.866784836 0.838616423 343427025 glx Sporisorium reilianum SRZ2 Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Ustilaginomycetes;order:Ustilaginales;family:Ustilaginaceae;genus:Sporisorium;species:Sporisorium reilianum; 0.816918277 0.794075137 0.8400424 0.829750429 0.81383368 0.819628224 99081800 PRI Ruegeria sp. TM1040 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 0.796651844 0.861211615 302677430 pec_Cdeg Schizophyllum commune H4-8 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 1.043924956 1.110197391 1.03510824 1.088645906 1.033016307 0.9902015 1.004030301 1.028539201 1.061147429 1.024796668 1.013184836 1.070689781 1.015827016 0.973289012 1.013286075 0.99580413 1.023693479 1.009033521 288336913 amyA Prevotella buccae D17 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella buccae; 1.05202081 1.039547289 0.941368356 1.036662967 0.98589248 1.017479016 0.984111917 1.018813944 0.997216539 1.000117684 0.935470985 1.020940752 0.918983153 0.954008681 0.898099421 0.937767201 1.030640329 1.065361418 109290259 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.974977561 0.967678033 0.922299679 0.979730664 0.949832187 0.997034877 0.944775084 0.983635836 0.949776076 0.924139486 0.949310627 0.940803085 0.909438959 0.895572031 0.913783341 0.954888727 0.954355844 300313152 gdh Herbaspirillum seropedicae SmR1 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herbaspirillum;species:Herbaspirillum seropedicae; 0.915407562 0.919857847 0.876800321 0.886459289 0.9123051 0.903616547 0.88368658 0.896504557 0.883566147 0.920414716 0.919469182 0.879029114 0.880191001 0.823556935 0.821544239 0.879419497 0.90061007 146337673 catechol Bradyrhizobium sp. ORS278 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.967408138 0.9657195 0.925185834 0.969101509 0.883247 0.900707822 0.880119266 0.891744047 0.940175836 0.945097294 1.011826931 0.927841745 0.945154308 0.87395935 0.877645131 0.86057894 1.001705832 0.916601151 319907031 vgb mine drainage metagenome Virulence Antibiotic resistance Degradation 0.979039601 1.005427963 0.916672455 0.934498628 0.902045172 0.978139976 0.959556114 0.966152777 0.947840448 0.994255556 0.926367361 0.924259409 0.872151113 0.952020327 0.811668876 0.900031378 0.944793242 1.005227631 333902522 xylc Pseudomonas fulva 12-X Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fulva; 0.770699176 0.823828874 380754498 amyA Rahnella aquatilis HX2 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Rahnella;species:Rahnella aquatilis; 0.802519199 0.810333782 0.83589521 0.868297328 0.807783206 0.827843527 0.837385947 0.801980568 0.825266698 0.816760531 0.90371808 0.803488713 0.861815511 90265665 phenol_oxidase Flammulina velutipes Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Physalacriaceae;genus:Flammulina; 0.988877011 1.016917335 0.951781076 1.009874674 0.981723881 0.982773282 0.960891581 0.931582671 0.977637815 0.978637432 0.961553424 0.985807183 0.997347777 0.956729181 0.914195014 0.960488642 1.005908023 0.982208384 319794391 PRI Variovorax paradoxus EPS Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 1.072122422 1.055790664 1.034936853 1.092867494 1.029230032 1.050133254 0.992703282 1.039998194 1.069498837 1.039014892 1.024413776 1.070968174 0.996963156 1.014630281 1.015171765 1.008212021 1.090348159 1.052371027 284036565 nitrilase Spirosoma linguale DSM 74 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Spirosoma;species:Spirosoma linguale; 0.778444818 0.810331373 170694441 nhh Burkholderia graminis C4D1M Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia graminis; 1.079143381 1.091050661 1.049267796 1.060457516 1.05506279 1.067333733 1.038998748 1.044375626 1.03342569 1.055169197 1.036956985 1.06648429 1.028377038 1.007759772 1.015359253 1.056389221 1.063059279 1.051385198 373942411 FBP_aldolase Ectothiorhodospira sp. PHS-1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Ectothiorhodospira; 0.817401018 0.825489113 0.805958617 0.826453469 0.854420485 0.81892362 0.821564647 0.832380493 0.837872822 0.821175632 0.887046197 0.873699478 150036114 soxY Thiothrix nivea Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Thiotrichaceae;genus:Thiothrix; 0.81731091 0.793557143 328915694 pgk Pseudomonas mendocina NK-01 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas mendocina; 0.983064577 0.963416563 0.940789403 0.932913931 0.92277627 0.951372838 0.877810837 0.908848103 0.935885094 0.911224874 0.936532076 0.947968297 0.933568242 0.901305051 0.883313401 0.944251449 0.973369818 0.955200428 333809261 mer Methylomonas methanica MC09 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylomonas;species:Methylomonas methanica; 1.058194977 1.047783125 0.973731465 1.070644595 0.963664731 0.98105005 0.953736287 1.026948974 1.019849394 0.97969205 0.951749646 1.003763334 0.958213556 0.935063352 0.926432284 0.96048924 1.060236524 1.025756406 354584570 cellobiase Paenibacillus lactis 154 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus lactis; 0.837199929 0.811403867 0.804304805 0.823001986 197103544 linc Phenylobacterium zucineum HLK1 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Phenylobacterium;species:Phenylobacterium zucineum; 0.841737839 0.847953727 0.816424714 0.825487956 0.793740167 0.790784719 0.842165901 155212613 Bacteriorhodopsin uncultured haloarchaeon FLAS10H9 Secondary metabolism Pigments Rhodopsin superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae; 0.971924563 1.056046673 0.962552668 1.012917328 1.008179776 1.028441503 0.975802147 1.007685364 1.004839365 0.98395699 0.957591864 0.942824597 1.00265249 0.959170866 1.012489571 0.982116051 1.026541063 1.010558621 330688062 aoxb uncultured bacterium Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 1.208641724 1.112425609 1.081361652 1.11679304 1.050685121 1.18391177 1.077163171 1.071028883 1.136688691 1.08525713 1.18218182 1.101260766 1.105114532 1.084500986 0.978446393 1.072415611 1.113947902 1.098769492 383774141 atzd Bradyrhizobium sp. S23321 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.956961421 1.006262538 1.026338098 0.954668448 0.950679973 0.985022778 0.881404995 0.940462269 0.931760389 0.910093449 0.909329087 0.954616184 0.934475617 0.922740531 0.918039691 0.93828885 0.989762288 0.974667384 2425103 hbh Azotobacter chroococcum Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Azotobacter; 0.924302817 0.924174735 0.841347538 0.912442276 0.819652508 0.85292138 0.861385722 0.889414147 0.900842774 0.843658582 0.817565851 0.890700301 0.931348525 390451811 ppx Nitratireductor aquibiodomus RA22 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Nitratireductor;species:Nitratireductor aquibiodomus; 1.31420146 1.306064893 1.27809934 1.320840981 1.315768365 1.314734356 1.31403111 1.344925564 1.308868615 1.308254943 1.305397129 1.332466067 1.27714841 1.27037168 1.275836766 1.282580028 1.306751567 1.291640707 377564550 poba Gordonia sputi NBRC 100414 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia sputi; 1.090684458 1.053240168 1.055276383 1.077231026 0.987395759 1.061171546 0.993942427 1.011805253 1.091957719 1.051369885 1.012851884 1.005535713 0.993821483 1.028227232 0.985532726 1.030936753 1.086455791 1.041866759 316981042 nirk uncultured proteobacterium Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria; 1.464790184 1.432143501 1.431214258 1.454318819 1.440639888 1.44415681 1.421511552 1.468465284 1.442224337 1.427875854 1.423489149 1.454015034 1.407877413 1.376545831 1.410572928 1.421473467 1.439076762 1.406019108 237797581 atzb Pseudomonas syringae pv. oryzae str. 1_6 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas coronafaciens; 0.869696567 0.914848792 0.956426307 0.912588909 0.930356482 0.940643495 0.923736296 0.892889165 0.916044961 0.903915906 0.900722031 0.924485076 0.907879185 0.909182223 0.84884138 0.859926979 0.901333639 0.889705951 323459982 aps_apra Desulfovibrio desulfuricans ND132 Sulfur adenylylsulfate reductase NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio desulfuricans; 1.168376985 1.179559362 1.12915853 1.151773832 1.099381896 1.099413493 1.077425708 1.092075764 1.119286524 1.115605165 1.116274977 1.121253592 1.074760998 1.074691492 1.063020194 1.078426594 1.133638361 1.13520391 403201504 bphd Gordonia rubripertincta NBRC 101908 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia rubripertincta; 0.900772367 0.944483188 0.918204814 0.907372367 0.926800204 0.906877289 0.925837584 0.90827016 0.894283082 0.924777989 0.907128248 0.871117984 0.858172635 0.856714214 0.823102657 0.833206104 0.901047967 0.957583624 42524592 b_lactamase Bdellovibrio bacteriovorus HD100 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Bdellovibrionales;family:Bdellovibrionaceae;genus:Bdellovibrio;species:Bdellovibrio bacteriovorus; 0.931145914 0.925573623 0.863110638 0.911678997 0.875960402 0.890523742 0.885036397 0.86891284 0.892220485 0.917397612 0.883158348 0.896948749 0.89015288 0.877366547 0.866118635 0.890502996 0.933362782 0.900002758 157070504 exopolygalacturonase_fungi Neurospora crassa OR74A Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Neurospora;species:Neurospora crassa; 1.216002489 1.22936669 1.180923482 1.229932003 1.185033296 1.227098447 1.190069381 1.199274938 1.197095989 1.189945154 1.187441229 1.185625279 1.17419311 1.183939283 1.180372366 1.164217149 1.231605582 1.191091319 103484273 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 1.146731585 1.141470396 1.123449406 1.086049549 1.112685722 1.137299016 1.085025053 1.045717587 1.091056058 1.08346394 1.099703084 1.102585907 1.078316529 1.083304903 1.078014603 1.115743537 1.119258747 1.115252249 229565227 glucoamylase Beutenbergia cavernae DSM 12333 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Beutenbergiaceae;genus:Beutenbergia;species:Beutenbergia cavernae; 1.077243895 1.022403174 1.044131947 1.048375536 1.020270767 1.023707858 0.984231484 1.044441488 1.062326812 0.993838923 0.996155298 0.998834424 0.984805517 0.99594715 0.96995913 1.011691954 1.140988579 1.063599247 308228491 ara Oscillochloris trichoides DG6 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Oscillochloridaceae;genus:Oscillochloris;species:Oscillochloris trichoides; 0.949217103 0.991955201 1.012303756 1.062346843 1.025436271 1.042878963 1.02786644 1.0240748 1.000913447 1.040663688 1.028373866 1.060344952 1.023338514 0.993306174 0.961636787 1.010027363 0.940458935 0.982529606 4160468 terc Bacillus megaterium Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 0.915319459 0.855678908 0.9283964 0.966720199 0.94080121 0.8974236 0.950146972 0.952760658 1.013492545 0.965462119 0.963104768 0.99651197 0.910715466 0.952845328 0.923823417 0.924206334 0.963364204 0.933097595 333939511 xyla Novosphingobium sp. PP1Y Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 1.263917347 1.258732048 1.232706605 1.232807328 1.225643041 1.2840642 1.233545552 1.254950784 1.209721891 1.208961377 1.22095165 1.235938921 1.216160698 1.198997078 1.217954702 1.250567064 1.243216624 1.224466664 161164464 ppx Sorangium cellulosum 'So ce 56' Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 1.214492999 1.203200818 1.204111848 1.210929985 1.171730873 1.213779652 1.176609648 1.181566908 1.19087814 1.218677434 1.222996197 1.216986099 1.163395156 1.14828258 1.119737846 1.169246021 1.21506633 1.178845103 326948512 dehh109 Thermoproteus uzoniensis 768-20 Organic Remediation Chlorinated solvents NA superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Thermoproteus;species:Thermoproteus uzoniensis; 0.937718335 0.937887034 0.843197831 0.898122353 0.873957933 0.901636414 0.867416591 0.810819222 0.90490498 0.897552931 0.871648732 0.869229214 0.814842111 0.850399469 0.845591655 0.914048205 0.959711375 0.913778105 124258931 vana Methylibium petroleiphilum PM1 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 0.857423886 0.976713235 0.85271072 0.91408194 0.880528806 0.974893809 0.876154688 0.863341104 0.907636669 0.904318744 0.868020601 0.858204622 0.877319782 0.907368011 0.887648973 0.855330913 0.916217864 0.959076256 224027836 aps_apra uncultured alpha proteobacterium Sulfur adenylylsulfate reductase NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 1.462695598 1.438543912 1.408712101 1.452757218 1.407081878 1.424445671 1.425585236 1.42814949 1.425427021 1.381989961 1.395440691 1.436730371 1.393742909 1.360028103 1.393787672 1.396560205 1.420640377 1.368354459 389866120 amyA Modestobacter marinus Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Geodermatophilaceae;genus:Modestobacter; 1.069808326 1.050293747 1.041326111 1.052528744 1.084018998 1.066289798 1.083709931 1.020465759 1.04930771 1.084268516 1.075500538 1.071281926 1.048419323 1.039442912 0.965372051 1.028827482 1.039582973 1.062523832 296132151 CsoS1_CcmK Thermincola potens JR Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Thermincola;species:Thermincola potens; 1.099526853 1.065270359 1.060906082 1.050501777 1.095895778 1.091074027 1.057891295 1.059989891 1.023102299 1.040939616 1.058007454 1.05314005 1.070704254 1.00969737 1.039259772 1.032079185 1.073678547 1.072843693 336103970 amyA Cellvibrio] gilvus ATCC 13127 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas;species:[Cellvibrio] gilvus; 1.181349871 1.180930147 1.1356615 1.219002024 1.25888172 1.137880044 1.234232824 1.141388202 1.186181233 1.106372855 1.171476033 1.265145222 1.131967779 1.072639927 1.07417028 1.197500601 1.182748372 1.116877691 42475470 bphc Rhodococcus rhodochrous Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 1.462708373 1.428374744 1.403399527 1.424997847 1.398411822 1.438953888 1.397481719 1.408370065 1.405811406 1.39118746 1.397401443 1.40129582 1.374985398 1.380339399 1.378232765 1.406318607 1.417576591 1.396524607 77920195 arsc Pelobacter carbinolicus DSM 2380 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Pelobacteraceae;genus:Pelobacter;species:Pelobacter carbinolicus; 0.878639293 0.855561695 0.840339704 0.848099375 0.840997458 0.853349232 0.871746562 0.846716538 0.826504622 0.85369418 0.832616079 0.794886144 0.789811554 0.807243917 0.807409143 0.841649307 0.900345472 341599879 dsra uncultured bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.787865194 0.807579528 0.812556845 0.780699002 0.794943161 0.829088958 256360383 cysJ Catenulispora acidiphila DSM 44928 Sulfur Reduction NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 1.196454887 1.187041005 1.172312392 1.203849614 1.160038143 1.197482394 1.14106601 1.163167931 1.20349992 1.17355663 1.162298116 1.178309958 1.15389041 1.148888813 1.149241432 1.129303342 1.211328875 1.182390094 61394236 hcab Pseudomonas putida Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.868759628 0.848510415 0.827763794 0.876290264 0.877401316 0.856120462 0.831650076 0.809305078 0.886106862 0.810433538 0.868790391 0.805399731 0.874719973 0.850521722 255280482 amyA Bryantella formatexigens DSM 14469 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Marvinbryantia;species:Marvinbryantia formatexigens; 1.179337432 0.975675722 0.985788634 1.008952998 1.042679463 1.054992844 1.006635537 1.00664977 1.014173747 1.033655881 1.026756453 1.011242681 1.012446929 1.030016169 1.014394484 0.961915242 1.06269166 0.991181216 332188869 acetylglucosaminidase Sphingomonas sp. S17 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 1.015993901 1.012267639 0.944413469 0.998833415 0.95970374 0.940476913 0.956498657 1.025747875 0.996719203 0.929488704 0.899793999 0.97169817 0.985077365 0.919839754 0.867303359 0.95998202 0.963595287 0.976749972 220924434 fccab Methylobacterium nodulans ORS 2060 Sulfur Sulfide Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 1.123469843 1.067080174 1.04938339 1.035561139 0.997200845 1.016727069 0.983726151 1.043234254 1.055074087 1.037480243 1.017775252 1.034522504 1.003352982 1.022089057 0.977280492 0.998646541 1.042935736 1.054323773 85671349 cmci Roseovarius sp. 217 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 1.473992102 1.435963117 1.436297167 1.435262523 1.424529175 1.483893595 1.424240098 1.448385627 1.425509854 1.442781372 1.422868842 1.426488594 1.399301221 1.395977944 1.373214034 1.412154505 1.468196427 1.437767564 154162690 exaa(moxf) Xanthobacter autotrophicus Py2 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 0.997373711 1.010918366 0.944943672 0.994320136 0.947069903 0.995344555 0.962872531 0.951056897 0.96521315 0.939018551 0.949375803 0.957739168 0.948017596 0.961415923 0.904258156 0.933511271 0.987324945 1.000703007 325291609 phn Agrobacterium sp. H13-3 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium; 0.884260977 0.862034959 0.882339763 0.858424892 0.886300444 0.913626939 0.904970393 0.905700599 0.845522476 0.90945904 0.905055179 0.901013225 0.889791029 0.891333073 0.852637431 0.861193594 0.877211691 0.895533715 164456042 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 0.780127099 0.898372168 0.821880515 0.823251791 0.821811614 0.809283035 0.836408146 0.869050387 0.790409079 0.801264088 0.807873096 0.829319228 257728031 pectinase (pectate_lyase) Erwinia chrysanthemi Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya; 0.842011926 0.842130604 0.816812468 0.8171529 0.873176118 0.846772352 0.85883554 0.832094715 262039027 amyA Leptotrichia goodfellowii F0264 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Fusobacteria;class:Fusobacteriia;order:Fusobacteriales;family:Leptotrichiaceae;genus:Leptotrichia;species:Leptotrichia goodfellowii; 0.8590128 0.807896294 0.820126208 0.802096148 0.820841616 334144013 bphF1 Thioalkalimicrobium cyclicum ALM1 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Thioalkalimicrobium;species:Thioalkalimicrobium cyclicum; 0.904709351 0.988484001 0.895137438 0.901344389 0.89678584 0.919321876 0.898157624 0.867341345 0.850598613 0.87430473 0.899453165 0.871160475 0.89582808 0.864634796 0.860500924 0.897100499 0.914139709 134081268 tannase_Cdeg Aspergillus niger Carbon Cycling Carbon degradation Tannins superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 1.132815591 1.129313895 1.150034702 1.148452037 1.144595864 1.151205804 1.150594229 1.128377587 1.118626041 1.120944402 1.131421484 1.117077077 1.112197184 1.068732005 1.062582947 1.090907602 1.144544737 1.129024718 261857083 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.11661454 1.126722156 1.156195763 1.155705323 1.141459964 1.097649454 1.104331227 1.115220729 1.14028464 1.082156546 1.12043044 1.133228198 1.094113312 1.04103838 1.063559152 1.066232352 1.1152863 1.120656024 315592590 xylj Thermaerobacter marianensis DSM 12885 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XVII. Incertae Sedis;genus:Thermaerobacter;species:Thermaerobacter marianensis; 1.004683112 1.131571773 1.033307997 1.13042976 1.079863619 1.044125166 1.092578018 1.022691921 1.010729428 1.0352057 0.968092326 1.041522499 1.070734105 1.000501135 1.019067297 1.010333158 1.059803711 1.042207908 380511221 cysJ Xanthomonas sacchari NCPPB 4393 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas sacchari; 0.866189277 0.852403972 0.798705092 0.774974171 0.820918736 0.796281246 0.819734678 0.80612318 0.79481378 0.819161803 8517644 soxY Paracoccus denitrificans Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus; 0.94292726 0.989043916 0.933021954 0.920569392 0.938142037 1.002068658 0.890554136 0.877905994 0.87291734 0.982743677 0.934515942 0.932522915 0.937861731 0.937684659 0.978196121 0.913743151 0.967774676 0.976820459 70930925 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.095897364 1.034603379 1.051036059 0.992683909 1.029751245 0.986582335 0.929166748 0.977947261 1.062465428 1.050855443 1.046608504 0.985847311 1.059251141 1.050731648 1.057803035 0.972228437 1.042430734 1.108136515 35212160 amyA Gloeobacter violaceus PCC 7421 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Cyanobacteria;class:Gloeobacteria;order:Gloeobacterales;genus:Gloeobacter;species:Gloeobacter violaceus; 0.931762231 0.840291174 0.89177337 0.886707541 0.870431241 0.854564488 0.870112332 0.849439846 0.834747326 0.930019939 0.912422845 0.910410818 0.849598068 0.826715025 0.847085701 0.838585159 0.93194385 0.998558611 298290439 tktA Starkeya novella DSM 506 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Starkeya;species:Starkeya novella; 1.290109177 1.280864919 1.240923113 1.279728667 1.227332668 1.29024595 1.211830307 1.223167382 1.261224469 1.243920244 1.247966189 1.252713216 1.209754471 1.225724699 1.184720084 1.247329087 1.298321482 1.241103953 343925164 mult_ring_12DiOx Gordonia alkanivorans NBRC 16433 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia alkanivorans; 1.257496956 1.248163663 1.258793999 1.24782238 1.246637126 1.271046813 1.23259661 1.242156905 1.232879273 1.228755174 1.238926498 1.249631722 1.24296559 1.205584856 1.234346346 1.220748338 1.28393566 1.23136112 318041673 terc Synechococcus sp. CB0101 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 1.172340276 1.117160877 1.095882786 1.152477683 1.065832795 1.115811887 1.073932747 1.111133745 1.144307513 1.105229692 1.086034272 1.106255365 1.033960085 1.071513169 1.03926269 1.091475108 1.141485284 1.105344264 359306721 amyA Arthrobacter globiformis NBRC 12137 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter globiformis; 1.051294036 1.051851989 0.99836312 1.016690312 0.998459891 1.032642826 1.016838304 1.015346649 1.009148009 1.06057229 1.031168255 1.032408931 0.992072028 0.968067366 0.992166958 0.977502614 1.038382852 1.062553883 339329034 pcpe Cupriavidus necator N-1 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 1.057335184 1.116381058 1.080413726 1.129519417 1.135081936 1.065962726 1.12012729 1.122997773 1.07496487 1.041941611 1.063432846 1.10961406 1.047657462 1.027784981 1.107384556 1.077037394 1.069680877 1.049348922 90423810 chnd Rhodopseudomonas palustris BisB18 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 0.972614904 0.949721865 0.982429867 0.917877144 0.955878927 0.957779043 0.919233776 0.95675579 0.963362633 0.978473329 1.025121782 0.966782462 0.906183841 0.926244708 0.908180204 0.903912294 0.999135834 1.000911487 156857781 aps_apra uncultured bacterium Sulfur adenylylsulfate reductase NA superkingdom:Bacteria; 1.181701409 1.141461625 1.063349204 1.100917069 1.068338443 1.162819617 1.103638867 1.132251002 1.095122926 1.120322799 1.076271598 1.089830971 1.076887191 1.114100602 1.063253757 1.089856513 1.158266799 1.145501928 294475571 phn Rhodobacter capsulatus SB 1003 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter capsulatus; 1.107153859 1.116418966 1.09815159 1.126019131 1.111300082 1.097596124 1.084318897 1.099562793 1.123406805 1.102573031 1.092300301 1.142681722 1.078453061 1.021752213 1.076079951 1.068656625 1.113727128 1.061920829 291529967 mannanase Eubacterium siraeum 70/3 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Eubacteriaceae;genus:Eubacterium;species:Eubacterium siraeum; 0.880692797 0.897652149 0.808263127 0.862640107 0.843884584 0.825352928 0.817629202 0.831217097 0.85166241 0.882402492 0.848690523 302418644 cellobiase Verticillium albo-atrum VaMs.102 Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticilium;species:Verticillium albo-atrum; 0.830441209 0.819763398 0.841381235 0.847626723 0.834919417 0.848682353 0.817061598 0.851912499 0.827976807 0.829517233 0.838434768 0.894961699 0.870191955 116610554 xylc Arthrobacter sp. FB24 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 0.899556014 0.848174675 0.881642434 0.907637816 0.947315567 0.925149866 0.923971271 0.937276784 0.888162306 0.898831151 0.90835366 0.903068254 0.886081452 0.858554322 0.833984394 0.878099314 0.892082973 386772996 amyA Brachybacterium paraconglomeratum LC44 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dermabacteraceae;genus:Brachybacterium;species:Brachybacterium paraconglomeratum; 1.453487141 1.438632314 1.402020868 1.456449541 1.388330272 1.439781296 1.394834222 1.404493197 1.384404874 1.379966172 1.385059674 1.395587057 1.386044772 1.357515199 1.364822135 1.372540383 1.463182635 1.376385624 254270048 urec Methylobacterium extorquens DM4 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium extorquens; 1.066929621 1.040823148 1.058539398 1.050115229 1.043454825 1.03072091 1.030910258 1.036546877 1.053322716 1.055670039 1.015370305 1.040104529 1.017409484 1.016038862 0.9919682 1.030423412 1.064571949 1.075005945 158307489 ppk Acaryochloris marina MBIC11017 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Acaryochloris;species:Acaryochloris marina; 0.969588717 1.022641082 0.973060669 0.992520822 0.902912552 1.010303579 0.939022643 0.956458953 0.974498331 0.971564439 0.994865619 0.951034684 0.906380881 0.949720658 0.847002017 0.921226398 0.989382557 0.995360002 90954571 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.291545422 1.267324754 1.255767909 1.271773132 1.235901201 1.265115846 1.20619898 1.229335986 1.239426061 1.235979002 1.249003871 1.259806421 1.221793287 1.243162564 1.222752415 1.244490491 1.264037724 1.221670948 76058454 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.883502852 0.937233502 0.8969721 0.89700353 0.91164523 0.907173539 0.917432642 0.870813463 0.879828495 0.918128237 0.891637328 0.935978861 0.911420138 0.891942797 0.857659785 0.914807968 0.874355182 0.926975379 186472363 bphF1 Burkholderia phymatum STM815 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 1.065772551 1.017591263 1.061450292 1.081808215 1.044137158 1.050444827 1.075238202 1.049926395 1.044146255 1.063984023 1.078968716 1.097359253 1.003736688 1.019376067 0.971408767 1.019738531 1.04290308 0.995357207 112875704 mult_ring_12DiOx Terrabacter sp. HH4 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Terrabacter; 1.012104708 1.003580972 0.979768849 1.029145505 0.96492202 0.986428931 0.963074572 0.980890688 1.010007534 0.976623563 0.998451295 1.003797181 0.935709567 0.948115086 0.929981173 0.897811786 1.018573861 0.993274509 384918250 soxY Citreicella sp. 357 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Citreicella; 0.984143452 0.896580813 0.948735897 0.944175828 0.91770621 0.871021366 0.904821638 0.909699064 0.969479695 0.957490171 0.941717624 0.949355892 0.932494588 0.912786978 0.8838347 0.894149186 0.965645242 0.929569861 189458761 lind uncultured bacterium Organic Remediation superkingdom:Bacteria; 0.963076051 0.925064967 0.93394237 0.928160369 0.864577537 0.87806977 0.925648721 0.87771085 0.934038932 0.893062188 0.926178672 0.919171227 0.88079174 0.821163527 0.876643117 0.904532452 0.940557296 0.987528371 374986299 pectinase (pectate_lyase) Streptomyces bingchenggensis BCW-1 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces bingchenggensis; 1.402530863 1.363903413 1.355865606 1.381526705 1.304728856 1.3824965 1.305122959 1.34195959 1.357400101 1.33564041 1.336023643 1.348067219 1.308810205 1.304071206 1.283541 1.329496242 1.399473727 1.353365655 357590694 cmci Corynebacterium nuruki S6-4 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium nuruki; 0.993145976 0.978204189 0.928636386 0.968652854 0.938027205 0.934353356 0.949200176 0.967492798 0.946370415 0.954131437 0.937421173 1.001249173 0.933146806 0.971476955 0.962060364 0.959536782 0.983469459 0.968758625 119714389 alkb Nocardioides sp. JS614 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 0.971545993 1.000833381 0.987827819 0.984070821 1.005660169 1.014796276 0.947470276 0.947252258 0.940669043 0.975990876 0.9409864 0.969051105 1.003180911 0.959868479 0.971501388 0.963567764 0.990754801 0.981037855 346921932 xylc Azospirillum amazonense Y2 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum amazonense; 1.197378474 1.133129419 1.136275458 1.189859608 1.122868482 1.14276944 1.1372042 1.170353668 1.174037003 1.128970951 1.126271443 1.167057264 1.137784743 1.105617441 1.137997287 1.143106145 1.182943132 1.119588053 86605117 TIM Synechococcus sp. JA-3-3Ab Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 0.925771251 0.982238878 0.978163081 0.928956749 0.918261652 0.949739127 0.936623589 0.948832266 0.915866209 0.995681648 0.864035371 0.938362985 0.824528641 0.886647933 0.836928924 1.031905289 0.888816848 0.889435973 68264014 amyA Corynebacterium jeikeium K411 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium jeikeium; 1.173300865 1.196867247 1.165961547 1.162751 1.174903266 1.20078207 1.145485654 1.132417198 1.14769052 1.178731467 1.156347255 1.17481952 1.158931646 1.13953454 1.113645389 1.162380486 1.196146812 1.167038673 208009952 acetylglucosaminidase Aliivibrio salmonicida LFI1238 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Aliivibrio;species:Aliivibrio salmonicida; 1.071166863 1.095041789 1.026662676 1.077333107 1.074742176 1.110029887 1.057360384 1.052786268 1.061920733 1.043070276 1.039899593 1.072581426 1.031749881 1.070059091 1.036757749 1.037646056 1.092231227 1.056776333 115500896 soxY Hydrogenophilus thermoluteolus Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Hydrogenophilus; 1.133812138 1.124452299 1.121552351 1.146180188 1.137230699 1.141979414 1.148933396 1.154911915 1.144168833 1.120520468 1.148508083 1.154285643 1.092838852 1.09478011 1.074560272 1.114293037 1.163690161 1.133309857 144429 xylanase Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas; 1.218819921 1.240922028 1.201946511 1.204345411 1.179661332 1.209412774 1.169957304 1.15487632 1.184292494 1.18754168 1.184973447 1.197121905 1.193384708 1.159416196 1.151948717 1.16813976 1.2121424 1.196913293 237903796 endochitinase Uncinocarpus reesii 1704 Carbon Cycling Carbon degradation Chitin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Onygenaceae;genus:Uncinocarpus;species:Uncinocarpus reesii; 1.611717417 1.551429092 1.571286341 1.572994207 1.56506312 1.589020142 1.556672164 1.59311377 1.567231255 1.549532191 1.555766911 1.585223229 1.538580009 1.53292876 1.556395825 1.551226617 1.573700369 1.531989744 336010853 pula Lachnospiraceae bacterium 3_1_57FAA_CT1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae; 0.796490145 0.836813275 0.808313821 0.839065164 0.80080402 0.799086429 0.853283328 0.831704734 0.861281047 0.846095118 0.819347883 0.800998365 0.829845609 0.82213608 383334953 amyA Mycobacterium xenopi RIVM700367 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium xenopi; 0.905125337 0.952861261 0.94962084 0.944819799 0.95099877 0.937130701 0.938592206 0.928341576 0.902770275 0.913937497 0.963012149 0.957250784 0.944750648 0.895887667 0.937923096 0.929102326 1.004406961 0.951082505 261857056 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.10349129 1.100157993 1.078995321 1.118769606 1.073401841 1.084105222 1.047545336 1.108167073 1.095724364 1.08468892 1.058399391 1.097370558 1.057501165 1.040319629 1.052531854 1.057428503 1.118192013 1.102780903 114321573 arxa Alkalilimnicola ehrlichii MLHE-1 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Alkalilimnicola;species:Alkalilimnicola ehrlichii; 0.937737564 0.962283753 0.950626583 0.976286354 0.914094607 0.995724688 0.952982715 0.96045223 0.921975685 0.897538499 0.929835825 0.879070843 0.840313712 0.873488037 0.856477431 0.877830121 0.982855768 0.961998174 359424827 amyA Gordonia amarae NBRC 15530 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia amarae; 1.15702525 1.134746934 1.136960095 1.168017553 1.138547095 1.172589069 1.096486742 1.127545133 1.122834984 1.148992309 1.116272043 1.13398067 1.125615847 1.136319223 1.106288145 1.125189271 1.160025371 1.13908727 167588466 vgb Burkholderia ubonensis Bu Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ubonensis; 0.806053322 0.792229622 0.800484587 0.81893009 385696965 cysJ Neisseria sicca VK64 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria sicca; 1.105570743 1.059028982 1.073347647 1.065363666 1.029256549 0.978222205 0.969002135 0.983463211 1.091193474 1.038140017 1.141331913 1.027846456 1.033240211 0.978047961 0.96331458 0.924265365 1.070587766 1.082756628 83590610 bphF1 Moorella thermoacetica ATCC 39073 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Moorella;species:Moorella thermoacetica; 1.11546575 1.119094003 1.136392115 1.110786124 1.104691263 1.129194711 1.097902739 1.106337755 1.119482266 1.117123929 1.088849285 1.0835442 1.061160995 1.037560829 1.016832732 1.034566558 1.136230119 1.056581012 358239839 cutinase Gordonia amarae NBRC 15530 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia amarae; 0.925853184 0.889929373 0.896907901 0.921316842 0.928840696 0.915775198 0.848980519 0.848317732 0.894509594 0.837961295 0.899415478 0.860463634 0.856648478 0.830143229 0.810064315 0.967513731 0.937774294 381374037 tehb Actinoplanes missouriensis 431 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes;species:Actinoplanes missouriensis; 0.869757576 0.797863465 0.852729495 0.76703248 0.84253859 0.806378782 0.854907213 0.852631621 0.801527269 0.801838688 0.797656712 157285415 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.059653976 1.12463449 1.02217554 1.033774636 1.036729152 1.05145147 1.008062478 1.000513361 1.047305802 1.06490011 1.016242203 1.040773828 1.030488254 1.046043747 1.031243171 1.020008401 1.069551869 1.046819512 302035417 badh Candidatus Nitrospira defluvii Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Nitrospirae;class:Nitrospira;order:Nitrospirales;family:Nitrospiraceae;genus:Nitrospira; 0.807658855 0.868741081 0.817721474 0.875295908 0.870705759 0.82508774 0.844477236 0.871885558 0.837318282 0.84095835 0.892331234 334136211 terc Paenibacillus sp. HGF7 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 0.972619945 1.003344929 0.989190815 1.02120297 0.992945003 0.962718916 0.997907587 1.051765738 1.016687843 0.930962074 0.972335735 0.972423934 0.956487079 0.921947775 0.906494035 0.950375527 0.99560704 0.92453778 87288805 arsc Blastopirellula marina DSM 3645 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Blastopirellula;species:Blastopirellula marina; 0.772281547 0.794331192 0.784447969 0.789074818 0.782176272 0.794424246 0.805437729 365896421 nirk Bradyrhizobium sp. STM 3843 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.828301591 0.911637217 0.879608945 0.836718328 0.894985796 0.859641614 0.882343221 0.872960419 0.897976705 0.787998101 0.80827845 0.865867575 0.889730025 0.920968033 288895729 cellobiase Allochromatium vinosum DSM 180 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Allochromatium;species:Allochromatium vinosum; 0.787212215 0.79592824 0.798320053 0.88064907 116198985 rgl Chaetomium globosum CBS 148.51 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 0.892769671 0.921981135 0.874516435 0.851824041 0.87097389 0.882647832 0.832360523 0.872208492 0.809847646 0.888041932 0.843578319 0.85725099 0.853042306 0.840076168 0.827351728 0.845930147 0.886951633 261857017 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.804020117 0.830174052 0.831268035 0.826343308 0.814742667 0.821823492 0.908899205 0.823961673 0.85969867 0.795912716 0.793973579 0.868040898 357389571 chitinase Kitasatospora setae KM-6054 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Kitasatospora;species:Kitasatospora setae; 0.876251305 0.861544522 0.861412019 0.871791457 0.795090352 0.875934709 0.83310237 0.858893296 0.82193866 0.848245148 0.800112602 0.836175595 0.815241236 0.831614291 0.858298704 0.866996086 383459636 urec Corallococcus coralloides DSM 2259 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Corallococcus;species:Corallococcus coralloides; 1.103153043 1.094183932 1.097571473 1.125045124 1.083093851 1.107031322 1.07658089 1.154531331 1.112200771 1.083077075 1.087094987 1.131121948 1.053775879 1.112124026 1.080938942 1.09415035 1.115202191 1.090576633 294884149 aoxb bacterium enrichment culture clone aoxheteroB23_4W Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 1.113548214 1.126571351 1.043658906 1.092661285 1.078644374 1.119633542 1.044885952 1.072528709 1.05657135 1.059485074 1.06439822 1.066228859 1.047757803 1.043121894 0.990401258 1.05430298 1.105036657 1.097986029 386397865 amyA Bradyrhizobium sp. WSM1253 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.959552888 0.95096329 0.919246858 0.9053802 0.944036621 0.922817763 0.92937862 0.895841086 0.904658586 0.938891235 0.941367152 0.910575616 0.880105471 0.917637132 0.927734511 0.89729694 0.932740392 99030559 ppk uncultured bacterium Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria; 0.829233606 0.875468283 0.919269381 0.775127084 0.826110028 0.849795556 0.824276774 0.908517282 358244526 nirb Gordonia araii NBRC 100433 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia araii; 0.822276192 0.801692304 0.803549687 0.798234379 0.813476142 0.813992327 0.82715901 0.840508166 0.78855054 0.783908557 0.879079288 299062671 gdh Erwinia billingiae Eb661 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia billingiae; 0.983431405 0.936192152 0.963847978 0.988658347 0.977079689 0.956150369 0.979728035 0.950872912 0.994659794 0.972505767 0.997676235 0.991534922 0.951878394 0.914637171 0.894340429 0.96490859 0.934225189 0.89757177 354615663 xylanase Saccharomonospora paurometabolica YIM 90007 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora paurometabolica; 1.345162388 1.305538496 1.324501652 1.29783508 1.265466901 1.196867525 1.229140643 1.239338571 1.338398143 1.307181108 1.295003982 1.290987601 1.291576016 1.251194108 1.252029159 1.259784085 1.367442021 1.315094109 13422497 linb Caulobacter crescentus CB15 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter vibrioides; 0.8732925 0.838433507 0.836610957 0.919046124 0.818335785 0.83676779 0.84265106 0.864570439 0.890478454 0.823070555 0.821662966 0.872419357 0.820129369 0.827982548 0.982223298 0.843050264 56695454 mer Silicibacter pomeroyi DSS-3 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 1.236935154 1.225715225 1.222241549 1.212622312 1.231192288 1.247655821 1.227778938 1.220932063 1.228315832 1.226068453 1.227914538 1.233869766 1.222433837 1.18235479 1.145265702 1.181644101 1.247851755 1.212465467 377564641 amyA Gordonia sputi NBRC 100414 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia sputi; 0.835157304 0.824306966 0.844436376 0.811155072 0.794804244 0.821159475 0.894983366 0.826945189 0.799663399 0.842886351 221083729 nhh Variovorax paradoxus S110 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 0.959804742 0.942062878 0.949756409 1.001578085 0.955830654 0.97518563 0.965800528 0.915106849 0.973427052 0.991519899 0.968072193 0.982359884 0.897522218 0.914395672 0.886494872 0.956270481 0.926704266 0.955827509 302475167 RgaE Streptomyces griseoflavus Tu4000 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseoflavus; 1.181177925 1.174571207 1.110598142 1.169478016 1.128766327 1.187928113 1.112228042 1.162613229 1.149930852 1.127388965 1.124567902 1.140528756 1.108903801 1.122485947 1.11261738 1.143865258 1.18572298 1.167391367 76803698 alkb uncultured bacterium Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria; 0.794660526 0.79556821 0.851976884 0.835874394 0.799036174 0.839900839 0.831788673 262086218 amyA Gordonia bronchialis DSM 43247 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia bronchialis; 0.903717344 0.89174721 0.925628049 0.897973343 0.920885367 0.924129557 0.910941268 0.940106477 0.905399761 0.926585065 0.906598861 0.907853306 0.880749462 0.911481781 0.929306574 0.914689606 0.91037905 0.940525212 359732642 limeh Rhodococcus pyridinivorans AK37 Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus pyridinivorans; 1.035764914 1.057630087 1.001447136 1.053459841 0.984517373 1.036246952 1.005182122 1.105079868 1.041803729 1.014365065 0.977557698 1.021732568 0.965519066 1.007321358 0.946932963 0.969123779 1.020227287 1.037310066 192764326 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.902718345 0.887490579 0.898849374 0.939153042 0.91014888 0.881562553 0.92584204 0.903342649 0.932511736 0.876997191 0.909153032 0.898098863 0.854107103 0.881685673 0.816421073 0.85707913 0.991409837 0.911913853 217160 rubisco Acidithiobacillus ferrooxidans Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus; 0.909740441 0.908753654 0.851968635 0.908282434 0.829486421 0.891555119 0.812494309 0.859267676 0.912988976 0.886794008 0.827413064 0.837309881 0.781599137 0.857486175 0.820791533 0.904388101 0.927649139 374984085 ara Streptomyces bingchenggensis BCW-1 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces bingchenggensis; 1.138002987 1.176368931 1.131043306 1.236563659 1.109956777 1.142743306 1.093914781 1.123677625 1.117403346 1.105004814 1.122362171 1.126812929 1.12791433 1.096920695 1.093167048 1.101568335 1.178832262 1.127002653 258593072 ppx Candidatus Methylomirabilis oxyfera Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;genus:Candidatus Methylomirabilis; 1.188115944 1.139021312 1.164501267 1.175575436 1.18252055 1.204940135 1.127125945 1.109065469 1.154042858 1.140980262 1.131138971 1.176003132 1.139068249 1.127370045 1.144835105 1.130308697 1.197280117 1.141984452 239593743 endochitinase Ajellomyces dermatitidis SLH14081 Carbon Cycling Carbon degradation Chitin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces dermatitidis; 0.82499833 0.862315874 0.908397622 0.935749194 0.893461178 0.836303277 0.88544885 0.82633408 0.856958696 0.849562753 0.87350369 0.898653165 0.847252599 0.900017453 116248799 linc Rhizobium leguminosarum bv. viciae 3841 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 0.840581863 0.801682708 0.811322295 0.827650752 0.777068916 0.816465553 261286652 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 1.001825122 1.007009532 0.978571971 0.99798184 0.960685021 1.000073548 0.971730513 1.007686149 0.979715143 0.991084604 0.970526385 0.972882695 0.956765114 0.952645656 0.933567067 0.964922602 1.002394368 1.000654401 160705536 protease_serine_fungi Phaeosphaeria nodorum SN15 Carbon Cycling Carbon degradation protein superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Phaeosphaeriaceae;genus:Parastagonospora;species:Parastagonospora nodorum; 0.802804679 0.789588068 0.849258124 134078654 tannase_Cdeg Aspergillus niger Carbon Cycling Carbon degradation Tannins superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 0.794566463 0.83230546 0.847884795 0.834263977 0.796462412 0.840095934 0.80223371 0.802097458 0.825973271 294884135 aoxb bacterium enrichment culture clone aoxheteroA73_4W Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 0.961003786 0.894929507 0.977322817 0.954308201 0.890152718 0.878167903 0.854682756 0.955180336 0.858234041 0.95562066 0.880085147 0.910524716 0.845174473 0.843969492 0.990109947 0.877944156 269219357 chitinase Actinomyces sp. oral taxon 848 str. F0332 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 848; 1.426921356 1.398765628 1.419592835 1.440925692 1.417707926 1.422567662 1.400133344 1.414713841 1.406115474 1.396243762 1.394289208 1.438997956 1.384313453 1.352125728 1.393182127 1.367253409 1.418519933 1.375605232 225192951 endopolygalacturonase_fungi Athelia rolfsii Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Atheliales;family:Atheliaceae;genus:Athelia; 0.829051779 0.807966021 0.770756855 0.868692825 0.785689808 0.854177748 0.822379347 0.848037211 225572024 codh Blautia hydrogenotrophica DSM 10507 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Blautia;species:Blautia hydrogenotrophica; 0.934359961 0.882732573 1.104207939 0.911584411 0.855394895 0.840102038 0.886916485 0.828342164 0.8562013 0.844646358 0.882434465 0.831643818 0.858930996 0.897819163 0.879828154 229473029 dsrB uncultured bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.890883958 0.81935306 0.903976658 0.812095531 0.848246819 0.835736605 0.858517389 0.844641466 0.836788672 0.838392682 0.808172394 0.850841114 0.881978011 0.879233981 297203252 RgaE Streptomyces sviceus ATCC 29083 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 0.814634099 0.7973191 0.827711811 0.791523932 0.890258754 0.869182263 0.866093579 0.859986444 0.853702029 0.828147819 0.825463681 0.792851284 0.816127485 0.844133078 0.845672857 0.826450936 83859960 GAPDH_Calvin Oceanicaulis alexandrii HTCC2633 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Oceanicaulis; 0.90190319 0.981831542 0.890979419 0.95097884 0.908304903 0.932791691 0.899978673 0.900641593 0.901455794 0.954370779 0.939556504 0.914891794 0.892619005 0.908449563 0.968321557 0.892803163 0.890140676 0.924580694 315169665 B_lactamase_A Enterococcus faecalis TX1342 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Enterococcaceae;genus:Enterococcus;species:Enterococcus faecalis; 0.834392159 0.819325647 0.837549053 0.796672959 0.773616395 0.813008528 0.805192317 0.840192941 402258760 pcag Sphingomonas sp. LH128 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 1.226956445 1.247116244 1.210315281 1.232788593 1.216190066 1.27097185 1.202277984 1.186440223 1.20570213 1.198649625 1.211806917 1.187615905 1.189184901 1.192690548 1.176667079 1.183153451 1.23529423 1.221048786 345633978 acetylglucosaminidase Streptomyces zinciresistens K42 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces zinciresistens; 1.040900814 1.007795035 1.001646307 1.025524703 1.023195812 1.048331098 1.024849805 1.000459812 1.010076243 1.034929748 0.973229593 1.017471187 0.964254219 0.984356495 0.940432533 0.980124736 1.024118544 1.025067281 208936519 dsra uncultured prokaryote Sulfur sulfite reduction NA 1.007419522 0.972584837 0.996548736 1.001408739 0.957457921 0.992830612 0.943780304 0.944636234 0.989948109 0.971911962 0.971307564 0.97289382 0.931911874 0.944511274 0.936410423 0.988693107 1.038782269 0.992386217 154509357 amyA Actinomyces odontolyticus ATCC 17982 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces odontolyticus; 0.980462125 0.967568045 0.895220682 0.986354739 0.911823254 0.882092898 0.915446477 0.960714369 0.98222835 0.97611649 0.870929267 0.969955802 0.892238947 0.869934818 0.848621656 0.888603159 0.962019743 0.968361463 83645112 B_lactamase_A Hahella chejuensis KCTC 2396 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Hahellaceae;genus:Hahella;species:Hahella chejuensis; 1.11317617 1.077870908 1.09953242 1.125371084 1.087938478 1.119458289 1.089235702 1.124896798 1.084069717 1.107470491 1.080583104 1.107802822 1.065501543 1.078186163 1.058573869 1.079227381 1.101853748 1.109842014 118575710 vgb Cenarchaeum symbiosum A Virulence Antibiotic resistance Degradation superkingdom:Archaea;phylum:Thaumarchaeota;order:Cenarchaeales;family:Cenarchaeaceae;genus:Cenarchaeum;species:Cenarchaeum symbiosum; 1.072577424 1.119875765 1.027776498 1.065248628 1.080019959 1.107335351 1.067826827 1.057453051 1.067517867 1.076454058 1.09044076 1.085059461 1.05672424 1.068834529 1.040151412 1.052487875 1.07405531 1.082912136 90107177 amyA Rhodopseudomonas palustris BisB18 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 0.770293373 0.804092424 189210435 endopolygalacturonase_fungi Pyrenophora tritici-repentis Pt-1C-BFP Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 0.84451834 0.82919816 0.835978625 0.822746453 0.809293441 0.792537769 0.857653104 0.835887645 0.790297049 297627523 amyA Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium;species:Propionibacterium freudenreichii; 0.92657776 0.902730826 0.838648289 0.913681257 0.95297572 1.03164844 0.912387448 0.903417716 0.895010772 0.922399189 0.872025938 0.874784279 0.809907562 0.835325278 0.894264945 1.011411206 0.929856055 300101199 bph Schizophyllum commune H4-8 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 0.915400234 0.972957516 0.826121716 0.90727784 0.925562173 0.937906181 0.866939825 0.866486677 0.991916396 0.885826471 0.942316111 0.91013982 0.934088643 0.861265798 0.908895415 0.843217541 1.003977862 403649527 xylj Mycobacterium fortuitum subsp. fortuitum DSM 46621 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium fortuitum; 1.16611813 1.116273124 1.139471057 1.14892244 1.173997366 1.144986188 1.154995831 1.155469833 1.152513451 1.153960179 1.141936139 1.155915218 1.105797439 1.083779312 1.113290866 1.084476067 1.154488749 1.095132119 111223515 camdcab Frankia alni ACN14a Carbon Cycling Carbon degradation Camphor superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia;species:Frankia alni; 1.686164931 1.669233383 1.648921704 1.637654622 1.644598904 1.69020638 1.61184891 1.657278697 1.635690812 1.643708131 1.644202299 1.648731599 1.600290113 1.600704879 1.610744632 1.630602362 1.63502454 1.631498479 299742989 exopolygalacturonase_fungi Coprinopsis cinerea okayama7#130 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 0.82137901 0.811740441 0.797985623 0.835906544 0.843866368 0.810945499 0.837284964 0.81127603 0.920025757 0.870201111 0.836795149 0.832256969 0.831136008 0.861033718 226184811 nirb Rhodococcus erythropolis PR4 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 0.784702119 0.817660453 0.807208279 0.834379885 0.815581658 0.830529049 0.782556321 0.811016242 0.924663331 0.799070942 0.819603959 0.858479739 114054980 aclb Balnearium lithotrophicum Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Desulfurobacteriaceae;genus:Balnearium; 0.922142272 0.84709353 0.852678754 0.901649729 0.864867855 0.858458736 0.856231073 0.893123498 0.93299571 0.878871432 0.815418185 0.884683447 0.8621914 0.893171094 0.892020649 0.904507903 0.883012177 169793474 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.096239592 1.062058615 1.036450461 1.060468176 1.07412678 1.027387942 1.053183907 1.028932701 1.034213378 1.017294216 1.044342227 1.051644481 1.049372029 1.010401685 1.047332427 1.043139461 1.070125561 1.018929757 326951140 amyA Pseudonocardia dioxanivorans CB1190 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Pseudonocardia;species:Pseudonocardia dioxanivorans; 1.352712699 1.34737151 1.310030756 1.331501786 1.311151368 1.346817325 1.294762647 1.342230281 1.309999465 1.302696386 1.305065038 1.317072165 1.293447214 1.278033051 1.299362311 1.304106581 1.343617022 1.295137161 296418489 amyA Tuber melanosporum Mel28 Carbon Cycling Carbon degradation Starch superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Pezizomycetes;order:Pezizales;family:Tuberaceae;genus:Tuber;species:Tuber melanosporum; 1.064140043 1.059674773 1.041642627 1.005257686 0.939300871 1.0054403 0.957730354 0.963516819 1.025856541 1.016765308 1.002577966 0.988919523 0.983307669 0.992178116 0.950861338 0.958440693 1.028745938 1.03778675 112463953 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.914738116 0.852876782 0.891438274 0.897375938 0.897315797 0.924959554 0.907924223 0.876749172 0.891089965 0.861623493 0.880034465 0.928787237 0.852451068 0.849982755 0.862390542 0.816567756 0.897108814 0.931307449 149121623 endoglucanase Methylobacterium sp. 4-46 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 0.930361196 0.983822807 0.989782036 0.949366507 1.054819373 0.958770052 0.97331253 0.974881751 0.994285036 0.971522633 0.891359214 0.989738892 0.988367953 0.919109093 0.966179355 0.979869137 0.995775008 1.007378937 177843342 xylanase Opitutus terrae PB90-1 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 0.831975028 0.867827814 0.841400099 0.835573984 0.791822712 0.851924566 0.806255988 0.863527276 0.847350302 225194062 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.979080433 0.905432008 0.850192797 0.909415422 0.817598644 0.850134906 0.819343435 0.872512812 0.906840477 0.891361229 0.850231196 0.897968972 0.787054691 0.849212096 0.823058034 0.838695531 0.920145136 0.945392075 303328517 ppx Desulfovibrio sp. 3_1_syn3 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 1.094135868 1.061315119 1.0671866 1.11354041 1.041094414 1.095266706 1.088740769 1.087528895 1.099293759 1.038846236 1.062441569 1.08303157 1.06154237 1.056375444 1.063754739 1.088457436 1.110590444 1.029331835 294054161 cysI Coraliomargarita akajimensis DSM 45221 Sulfur Other NA superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;order:Puniceicoccales;family:Puniceicoccaceae;genus:Coraliomargarita;species:Coraliomargarita akajimensis; 0.789268304 0.794968084 0.811107954 0.810058366 0.832330284 0.816688007 0.879486762 0.812235284 0.807892025 0.819940089 0.808519503 0.817006953 375053533 urec Rhizobium sp. PDO1-076 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 1.082546747 1.088804074 1.057196688 1.072671118 1.049968007 1.083590964 1.049796817 1.08668513 1.075872289 1.092141104 1.055764807 1.078761681 1.027281191 1.047003691 1.016369368 1.048635894 1.108771789 1.087521274 225041240 amyA Clostridium asparagiforme DSM 15981 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium asparagiforme; 1.043983353 1.033217047 1.033802162 1.05729108 1.036968618 1.049092632 1.037441495 1.01729952 1.183392994 1.024352967 1.02283983 1.024681128 1.008039 1.014472512 0.9724637 0.978546806 1.056739749 1.032540358 78484155 endochitinase Streptomyces sp. AJ9463 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 0.813001507 0.873047332 0.821980205 0.85946237 10441635 bphF1 Comamonas sp. JS765 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas; 0.907436865 0.845567764 0.872365742 0.895898299 0.903588334 0.868496083 0.868242232 0.864366737 0.911150262 0.917074524 0.889284247 0.897643613 0.849369464 0.827234728 0.82473063 0.857443709 0.894032222 0.911171532 363984517 CsoS1_CcmK Thermanaerovibrio velox DSM 12556 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Synergistetes;class:Synergistia;order:Synergistales;family:Synergistaceae;genus:Thermanaerovibrio;species:Thermanaerovibrio velox; 0.795745048 0.898532702 0.810504623 0.825757863 0.871633577 0.901518535 0.84050589 0.918234628 0.782178681 0.911411673 0.836813309 0.856467026 0.85523089 0.873455536 0.913503154 0.872280627 0.837910491 0.86680307 158108669 mdlc Frankia sp. EAN1pec Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 1.048984318 1.095243616 1.074484715 1.08054777 1.078375949 1.147212377 1.064584187 1.079442005 1.091662795 1.090083154 1.064537499 1.057902863 1.067431278 1.076806562 1.024929291 1.065912554 1.110413744 1.088495862 326949859 merb Pseudonocardia dioxanivorans CB1190 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Pseudonocardia;species:Pseudonocardia dioxanivorans; 1.238360466 1.250019247 1.21542642 1.211792543 1.218762047 1.246584114 1.241647731 1.200274726 1.183495803 1.216265195 1.234887887 1.216822921 1.226542439 1.205153359 1.20113801 1.194870622 1.233876658 1.216432476 357589205 ppx Corynebacterium nuruki S6-4 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium nuruki; 1.185382345 1.182303948 1.17280362 1.179765354 1.154727412 1.205957452 1.168980423 1.18384039 1.174422429 1.163723291 1.161155906 1.189702414 1.137163485 1.149065685 1.127488707 1.165010037 1.190987012 1.164576822 26985954 SoxB bacterium HY-90 Sulfur Sulfur Oxidation NA superkingdom:Bacteria; 1.023305143 1.011038281 1.001764188 1.013994581 0.935427939 0.984675696 0.941562581 1.006273941 1.001204358 0.994050068 0.984630318 1.015544727 0.92620488 0.912861934 0.91893045 0.962503165 1.023231289 388452154 pmoa uncultured bacterium Carbon Cycling Methane Methane oxidation superkingdom:Bacteria; 1.319249751 1.151860084 1.052714033 1.152985184 1.103928066 1.109294745 1.049830027 1.178349534 1.201043528 1.011079896 0.987494868 1.087293535 1.097665501 1.046798373 1.045531413 1.077270025 1.139173333 1.126126424 295896235 amyA Mycobacterium parascrofulaceum ATCC BAA-614 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium parascrofulaceum; 1.187055119 1.171544618 1.17313015 1.183759775 1.146234421 1.196291577 1.173316731 1.193099043 1.160125469 1.157992657 1.146319155 1.1789493 1.136169488 1.152944428 1.106298507 1.173826827 1.161706734 1.169410233 91788718 PRI Polaromonas sp. JS666 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 1.138856018 1.123022267 1.113297311 1.147272243 1.147608516 1.123259128 1.109436818 1.098612702 1.124661952 1.10855132 1.093752355 1.192455655 1.075079472 1.051453029 1.020854986 1.081747555 1.132829728 1.130834864 60475978 rubisco uncultured bacterium Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria; 1.226779334 1.218155685 1.185082814 1.187526241 1.17431918 1.207663234 1.183182725 1.163034431 1.19821766 1.197786223 1.176526414 1.202485304 1.147613268 1.16943806 1.1757977 1.160336622 1.203361327 1.2179187 170093714 phospholipase_C_fungi Laccaria bicolor S238N-H82 Carbon Cycling Carbon degradation Phospholipids superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Tricholomataceae;genus:Laccaria;species:Laccaria bicolor; 0.944119422 0.953726584 0.918990098 0.943050887 0.947765338 0.916672022 0.927160416 0.931707964 0.929459578 0.916382869 0.89367558 0.909607521 0.889019351 0.900559363 0.859460463 0.879173852 0.923941494 0.937941968 381403415 xyla Pantoea sp. Sc1 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 1.14045767 1.108332252 1.136711011 1.118211409 1.108763807 1.16085129 1.096222213 1.118302992 1.124754479 1.139701898 1.104918997 1.113680653 1.120803676 1.09937905 1.074693953 1.112894533 1.174955308 1.152017989 338823029 TIM Agrobacterium tumefaciens F2 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 1.149388798 1.165071248 1.125437482 1.170446458 1.157059435 1.164798605 1.164629834 1.159545901 1.155651274 1.120864008 1.137001275 1.163718191 1.15799016 1.091316878 1.127732504 1.099482678 1.16602747 1.111762026 148254273 nasa Bradyrhizobium sp. BTAi1 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.963378812 1.010884736 0.96886162 0.986068247 0.996899501 0.989372791 0.984644954 0.947234012 0.998770024 0.98617599 1.000269725 0.98891125 0.970069095 0.953329921 0.961387605 0.927469304 0.963743973 0.989809775 380774933 amyA Microbacterium laevaniformans OR221 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Microbacterium;species:Microbacterium laevaniformans; 0.963360423 0.924304352 0.896204239 0.937627996 0.895213418 0.93331967 0.970006249 0.806716266 0.866149273 0.942420713 0.869148093 0.905217882 0.916658687 0.918897041 0.853218742 0.86232419 0.997009105 0.942596498 161394700 urec Roseobacter litoralis Och 149 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter litoralis; 0.883414652 0.817961175 0.859088579 0.830791383 0.837487337 0.870789075 0.798678421 0.883106144 0.82712531 0.889434846 0.867133507 142852446 fthfs Aeromonas salmonicida subsp. salmonicida A449 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas salmonicida; 0.996224517 0.990605655 0.962920398 0.979847905 0.994343949 1.006247475 0.958729664 0.968162056 0.967432744 0.994444993 0.986662188 0.972598059 0.973824418 0.996216234 0.943667909 0.946066209 1.009548223 1.019703766 20270772 phenol_oxidase Trametes pubescens Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Trametes; 0.81105991 0.857872719 0.831890963 0.868507545 0.834047968 0.844568036 0.832309384 170605730 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.81533214 0.809125453 71002270 Glucose_oxidase_fungi Aspergillus fumigatus Af293 Carbon Cycling Carbon degradation glucose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Aspergillus fumigatus; 1.016416176 0.947206165 0.987925666 1.071048254 0.958826639 0.940010127 0.944701133 0.998521144 1.018175938 0.949743135 0.963751931 0.967971013 0.957826173 0.910640774 0.906177402 0.902270907 1.026009674 0.941104842 330958934 cmci Pseudomonas syringae pv. maculicola str. ES4326 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 0.901407857 0.827313714 0.808430166 0.802035773 0.834009683 0.845522211 0.843109179 294631660 merb Streptomyces sp. e14 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 0.907507343 0.836321315 0.886499755 0.865220448 0.789409396 0.861546547 0.858939867 0.873651025 0.892658804 0.895966783 0.792514483 0.816380922 0.827043394 0.855636588 284448043 nitrate_reductase uncultured eukaryote Nitrogen N Assimilation NA superkingdom:Eukaryota; 1.046472403 1.03580569 1.025955395 1.04276937 1.046939605 1.062813859 1.042493174 1.045685661 1.007791099 1.033634649 1.006277381 1.04496706 0.97944976 1.011752748 0.941937918 1.00284037 1.069577609 1.03840315 392951484 xylj Hydrocarboniphaga effusa AP103 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Sinobacteraceae;genus:Hydrocarboniphaga;species:Hydrocarboniphaga effusa; 0.797942155 0.842449139 0.803650149 0.819070005 74038364 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.077745182 1.047227118 1.077126699 1.060370047 1.082993329 1.06391972 1.070001623 1.074495003 1.077596165 1.099732037 1.076953506 1.058283876 1.032565735 1.030302226 1.02410538 1.001515326 1.086872548 1.052611646 388604769 amyA Enterobacter cloacae subsp. cloacae GS1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter cloacae; 0.983995938 0.929697794 0.975099605 0.972967283 0.930331234 0.959906132 0.888999585 1.001932274 0.950622259 0.954124068 0.941808536 1.000664516 0.949247045 0.964591793 0.91028302 0.911503132 0.991564476 0.939566082 28556705 catechol_b uncultured bacterium Organic Remediation Aromatics Other aromatics superkingdom:Bacteria; 1.246511109 1.290619165 1.217076319 1.249829663 1.253039935 1.253844384 1.225888179 1.192162707 1.229670299 1.198661219 1.200130737 1.227096649 1.201120272 1.194064515 1.162987107 1.176232322 1.256466552 1.25627432 302557276 rgl Streptomyces griseoflavus Tu4000 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseoflavus; 1.314507495 1.304397958 1.294333153 1.279965479 1.278132915 1.317763437 1.285477679 1.260354012 1.284746757 1.296804047 1.287019485 1.305888909 1.256377622 1.281223711 1.251203548 1.29114672 1.30641022 1.3023785 260435422 CsoS2 Synechococcus sp. WH 8109 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 1.360758956 1.34673187 1.329757713 1.321739784 1.294232467 1.355836699 1.291998477 1.314529763 1.310984528 1.318649097 1.318649785 1.325013283 1.286087547 1.306065962 1.26418351 1.322238932 1.36021967 1.351100923 330836734 amyA Sphaerochaeta coccoides DSM 17374 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Sphaerochaeta;species:Sphaerochaeta coccoides; 0.898822502 0.87688096 0.849591474 0.957566968 0.816023277 0.806431022 0.916690856 0.897077029 0.911181992 0.860651619 0.825078398 0.884357989 0.810526683 0.827355544 0.854167179 0.913022145 0.918091145 140713899 nasa uncultured marine bacterium Nitrogen Assimilatory N reduction NA superkingdom:Bacteria; 0.998938266 1.01876552 0.952985705 1.018673316 0.990456858 1.055583503 0.949108178 0.950676741 1.012534997 0.986215883 0.974695159 0.942055488 0.95161574 1.031699118 0.950116732 0.932175437 1.017191818 1.035031636 114571140 pgk Maricaulis maris MCS10 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Maricaulis;species:Maricaulis maris; 1.273935358 1.258480477 1.224091607 1.233242792 1.21449127 1.257870565 1.181953097 1.252796908 1.213658326 1.226765415 1.225099848 1.226705541 1.201361963 1.226358705 1.187227521 1.218121089 1.262327025 1.232109139 224602531 terc Pseudogulbenkiania ferrooxidans 2002 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Pseudogulbenkiania;species:Pseudogulbenkiania ferrooxidans; 1.067697548 1.022065485 1.035421183 1.002469439 1.042853285 1.085440012 1.056333858 1.038057805 0.985526677 1.042123841 1.039324893 1.01872572 1.000720244 0.968886482 0.932623901 0.981887881 1.040306176 1.011001367 332284343 arsc Pusillimonas sp. T7-7 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Pusillimonas; 0.910468268 0.90896255 0.880383554 0.915965561 0.866261902 0.823613809 0.829514 0.863526453 0.85492306 0.866059085 0.864244186 0.892463695 0.819829473 0.814678278 0.896670996 0.897054438 84509013 cmci Loktanella vestfoldensis SKA53 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Loktanella;species:Loktanella vestfoldensis; 0.877584504 0.879377335 0.9105656 0.940200033 0.888327108 0.900186306 0.860324838 0.938068336 0.900645627 0.880310791 0.892373201 0.943783666 0.882859723 0.861159593 0.850445625 0.885773651 0.872508753 0.863021437 269828740 endochitinase Vibrio alginolyticus 40B Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio alginolyticus; 1.226655961 1.197989234 1.210668882 1.165702646 1.195364671 1.213753394 1.193749724 1.199824835 1.181541065 1.181215638 1.185395377 1.178086501 1.189415418 1.198454812 1.201566264 1.197389187 1.182360311 1.19321622 296847955 cutinase Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Nocardiopsis;species:Nocardiopsis dassonvillei; 0.957959709 1.009154328 0.940971321 0.953800107 0.983171743 1.015548748 0.964150574 0.979469949 0.948757412 0.97802909 0.972480542 0.975389158 0.981526224 0.950616192 0.94790965 0.985682874 0.981561941 1.025619143 220936052 pgk Thioalkalivibrio sulfidophilus HL-EbGr7 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio;species:Thioalkalivibrio sulfidophilus; 1.203659382 1.193571738 1.237092131 1.156026458 1.164696079 1.161129032 1.081172382 1.141292391 1.13319025 1.175316781 1.165459651 1.15164995 1.157535094 1.189026896 1.100067359 1.150265253 1.194265523 1.187518401 388487119 amyA Modestobacter marinus Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Geodermatophilaceae;genus:Modestobacter; 1.081006555 1.088337661 1.05795099 1.089828334 1.069322185 1.09070906 1.018327448 1.062834088 1.028689421 1.055907339 1.02933805 1.05161238 1.051346342 1.041951537 1.023699121 1.026869771 1.075942188 1.065212592 345853542 ppx Streptomyces zinciresistens K42 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces zinciresistens; 1.069728666 1.096739271 1.018365627 1.039486194 1.05736111 1.036334199 0.999571454 1.011848173 1.033731646 1.059409084 1.020087907 1.008327964 0.977536704 0.99039068 0.965371471 0.969025242 1.055869966 1.096237345 170076957 FBPase Synechococcus sp. PCC 7002 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 1.091252614 1.085663764 1.004660127 1.03199627 0.953830843 1.056263109 0.982616905 1.031662683 1.017380156 1.054838044 1.011620904 0.9995438 0.982720694 1.059300977 1.000250064 1.012242075 1.040666298 1.060135344 116251365 ppk Rhizobium leguminosarum bv. viciae 3841 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 0.933294354 0.88911194 0.891854744 0.929929829 0.861603769 0.898488836 0.85743916 0.944003347 0.872073278 0.924429885 0.871463475 0.923398274 0.845723928 0.866948372 0.815914874 0.912657123 0.881943466 223470359 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.007665977 1.050300852 0.989415356 1.009802463 1.012453806 0.989535688 1.000917089 0.960167231 1.044947443 0.925339431 0.987924041 0.999929513 0.970576045 0.956749376 0.980661571 0.972125229 1.000925393 0.98909555 91977950 amyA Rhodopseudomonas palustris BisB5 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 0.838502687 0.834391208 0.852289185 0.86447578 0.876111318 0.814531783 0.85861575 0.847825297 0.832904637 0.826654715 0.834401156 0.964050947 0.869588834 0.887518324 0.871660274 50542710 rubisco uncultured bacterium Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria; 0.835879652 0.814575703 0.902698873 0.794972413 0.862396976 0.808254479 261206220 dehh109 Ajellomyces dermatitidis SLH14081 Organic Remediation Chlorinated solvents NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces dermatitidis; 0.833952535 0.822937025 0.844600006 0.8002249 227238515 amyA Mobiluncus curtisii ATCC 43063 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Mobiluncus;species:Mobiluncus curtisii; 0.946212876 0.9403266 0.942567018 0.963751019 0.928248697 0.976730877 0.922120975 0.921472234 0.929624949 0.903787282 0.929702286 0.938102893 0.91276143 0.939937758 0.896974394 0.908925608 0.95315648 0.901298759 119538763 terc Nocardioides sp. JS614 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 1.24630442 1.299012031 1.221455828 1.240655771 1.239664982 1.281761851 1.214502578 1.222226285 1.211109285 1.168014136 1.15822976 1.17736783 1.18367014 1.212831207 1.222060276 1.223482576 1.20846492 1.238969734 50236433 b_lactamase Ralstonia pickettii Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 1.481525487 1.439441049 1.442426595 1.461662611 1.411456293 1.470321191 1.404110522 1.442638896 1.433502211 1.429615223 1.430588547 1.446087851 1.396837699 1.407749953 1.395337002 1.42360756 1.457490424 1.431279012 334103606 one_ring_23diox Sphingobium chlorophenolicum L-1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium;species:Sphingobium chlorophenolicum; 1.211691552 1.228363727 1.187147489 1.219182518 1.2221722 1.237885297 1.198078275 1.204443362 1.199658538 1.208504253 1.21340443 1.21912472 1.208101483 1.176130286 1.194140873 1.213421274 1.218825974 1.170794292 164415622 mer Sphingomonas sp. Seq21_b Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 1.037449778 0.954720567 0.964490492 1.046434505 1.007385901 0.987967485 0.97755598 0.994359423 1.036730252 0.947399823 0.972942652 1.066639374 0.950995045 0.917711069 0.984486607 0.954462272 1.043313485 0.945546258 171851849 terc Corynebacterium urealyticum DSM 7109 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium urealyticum; 0.86278152 0.852943633 0.819018624 0.772057259 0.805426211 0.861580976 0.817632323 0.89606863 0.831182158 0.903562685 0.901426946 3157720 nifh unidentified nitrogen-fixing bacteria Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 1.135889029 1.130183709 1.138965517 1.148753029 1.121543898 1.163524335 1.156369957 1.151271067 1.123886682 1.131544889 1.1095395 1.146469831 1.079150327 1.086922406 1.053958659 1.078358368 1.126264983 1.120970015 288911619 mhpa Azospirillum sp. B510 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum lipoferum; 1.041996002 1.071021879 1.045774582 1.043113172 1.049837222 1.047949122 1.033777507 1.03634753 1.038198412 1.001603959 1.037651351 1.016178585 1.016587651 1.009532735 0.978832971 0.974264886 1.044154407 1.009216336 334343281 badh Sphingobium chlorophenolicum L-1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium;species:Sphingobium chlorophenolicum; 1.015338519 0.952373751 0.904480038 0.969679252 0.955220074 0.941167976 0.917590324 0.881677388 0.956942429 0.857844779 0.850300875 0.932172924 0.952575274 0.852107279 0.852764436 0.922714642 0.966475653 0.918696964 115525282 ppx Rhodopseudomonas palustris BisA53 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 0.798537055 0.813449151 0.824233659 0.82537805 0.809887383 0.820023632 0.854801965 0.832169944 0.824031226 0.841616478 0.866342026 151280243 urec Janthinobacterium sp. Marseille Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Janthinobacterium; 1.253168502 1.219664857 1.234345576 1.249391196 1.214317126 1.234478405 1.206266086 1.223911092 1.247564403 1.218723384 1.220173589 1.234744985 1.202211079 1.195127699 1.24263309 1.216520231 1.223709451 1.221941264 353207527 terc Hyphomicrobium denitrificans 1NES1 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium;species:Hyphomicrobium denitrificans; 0.864660221 0.849053382 0.873932183 0.857014961 0.808413143 0.827114213 0.88289908 0.834912906 299132720 mer Afipia sp. 1NLS2 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Afipia; 0.796965971 0.812276784 344035775 rgl Streptomyces violaceusniger Tu 4113 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces violaceusniger; 0.808175041 0.888110512 0.879538099 0.864327595 0.868636054 0.915785721 0.873253781 0.915643367 0.803689577 0.846757819 0.860804484 0.831400068 158424800 nfsa_2 Azorhizobium caulinodans ORS 571 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Azorhizobium;species:Azorhizobium caulinodans; 1.077993765 1.075780575 0.999709124 0.984507524 1.017497456 1.050372324 0.991787598 0.962180167 1.007254908 1.036724083 1.020383299 0.998572155 0.978649543 0.993245579 0.939481087 0.986946102 1.046553007 1.046132124 289626671 cysJ Pseudomonas syringae pv. aesculi str. NCPPB3681 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas amygdali; 1.328456725 1.230530289 1.209207135 1.224686814 1.204255487 1.225409294 1.197318813 1.220446615 1.223981203 1.205436438 1.194416295 1.189958262 1.161679129 1.177697899 1.197780507 1.14773093 1.233893122 1.241484584 373107111 pula Lachnospiraceae bacterium ACC2 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Stomatobaculum; 0.976900083 1.023134256 0.980297614 0.998539997 1.013071548 1.004246838 0.949703913 1.036299844 0.970861721 0.966337013 1.019187748 0.999847831 0.961114195 0.951805837 0.95521859 0.947303011 0.97391391 0.990826024 373547786 amyA Mycobacterium tusciae JS617 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tusciae; 0.982639819 0.992315281 0.978044475 1.034631925 0.981922493 1.014966091 0.954532232 1.006181962 1.045375424 1.030143102 0.991018545 0.987784213 0.956905012 0.993768737 0.983399778 0.971063887 0.996785763 0.98739279 295978260 ppx Gluconacetobacter hansenii ATCC 23769 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter hansenii; 1.339764305 1.33987973 1.348769213 1.34497018 1.31363729 1.335221066 1.311790833 1.323630083 1.313033655 1.29014486 1.30183513 1.332953458 1.304861534 1.263056074 1.300278722 1.321827926 1.326532725 1.288714276 499712 chitinase Aeromonas sp. 10S-24 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas; 1.158587146 1.143871201 1.143749774 1.173897885 1.141771866 1.194576132 1.175396087 1.189374601 1.128904929 1.135621932 1.121553677 1.146830437 1.124901003 1.106214699 1.090312506 1.120765284 1.176785012 1.164858313 269928606 amyA Sphaerobacter thermophilus DSM 20745 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Chloroflexi;class:Thermomicrobia;order:Sphaerobacterales;family:Sphaerobacteraceae;genus:Sphaerobacter;species:Sphaerobacter thermophilus; 1.07752845 1.026588572 1.027442802 1.082272364 1.039601617 1.039452698 1.036658168 1.024129952 1.068203503 1.026722158 1.028731145 1.054717577 1.022559495 1.008385856 1.02760155 1.055991301 1.058690244 1.005988335 320100952 amyA Desulfurococcus mucosus DSM 2162 Carbon Cycling Carbon degradation Starch superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Desulfurococcales;family:Desulfurococcaceae;genus:Desulfurococcus;species:Desulfurococcus mucosus; 0.769966861 0.823519765 261198655 chnb Ajellomyces dermatitidis SLH14081 Organic Remediation Other Hydrocarbons NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces dermatitidis; 0.954671013 0.913399276 0.918453511 0.962002629 0.881199159 0.89860908 0.888440493 0.867606549 0.941362852 0.872490326 0.877924067 0.915195011 0.846568374 0.843525702 0.859908661 0.851091717 0.953003258 0.911997193 380737386 amyA Pantoea sp. Sc1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 0.95364795 0.98640539 0.9955645 0.964741383 0.921693472 0.984243987 0.953407026 0.916935163 0.937619233 0.956317002 0.942641649 0.959401701 0.900376587 0.897536175 0.867085398 0.903458564 0.95388497 0.955634422 163854555 ophc Bordetella petrii DSM 12804 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella petrii; 1.064887204 0.958257496 1.053741988 0.93260113 1.115359011 1.125250308 1.125866111 0.943369686 1.005350304 1.136741024 1.081043801 1.009208066 1.078687512 1.084052909 1.0853004 1.102769992 1.005100495 1.111502773 308179069 catb Arthrobacter arilaitensis Re117 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter arilaitensis; 1.20574029 1.205068653 1.163657754 1.165724243 1.159419262 1.223252081 1.151133334 1.13100621 1.152464595 1.161395988 1.158355617 1.132669095 1.136941528 1.151450898 1.123565147 1.151283161 1.173170708 1.202911371 623540 pectinase (pectate_lyase) Pseudomonas fluorescens Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.841993107 0.848546549 0.823175376 0.802468409 0.881741113 0.813762381 0.796233222 0.846010421 0.861400257 88809813 pgk Synechococcus sp. WH 7805 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 1.003569452 1.014095301 0.933585514 0.974909259 0.935885698 0.988355854 0.950695096 1.016103857 1.016769392 0.948311486 0.884568519 0.953895699 0.966005759 0.935829873 0.932973985 0.984514386 1.044988082 1.068423618 33391427 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.886674277 0.886483549 0.830858854 0.864199376 0.852404405 0.903058052 0.877291291 0.833717258 0.875580128 0.91142824 0.8866816 0.894174843 0.858162351 0.847917426 0.860914341 0.840773665 0.8749699 0.903833804 356690779 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.983596738 0.900940311 0.943118632 0.928325482 0.905714941 0.850660138 0.891078582 0.904997709 0.866269051 0.927265917 0.85597718 0.866631724 0.961027673 0.898020287 408418745 rd Desulfobacula toluolica Tol2 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfobacula;species:Desulfobacula toluolica; 1.040408899 1.077881664 1.051036004 1.102976221 1.072252974 1.051910746 1.037597826 1.03554289 1.030943576 1.088483727 1.053967282 1.081244666 1.07305477 1.052471395 1.034334996 1.032431313 1.022915941 1.029161212 359460903 FBPase Acaryochloris sp. CCMEE 5410 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Acaryochloris; 1.205362151 1.266167822 1.19802378 1.233184421 1.230558807 1.220817276 1.20566335 1.219116461 1.20329298 1.20073641 1.199075522 1.217790035 1.212209663 1.205048965 1.189320899 1.176223253 1.201373687 1.220269682 310823767 gdh Stigmatella aurantiaca DW4/3-1 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 1.134151193 1.117721798 1.086773325 1.096265979 1.058728029 1.143483364 1.076284916 1.082420528 1.091323478 1.128017626 1.0643062 1.08339186 1.065977078 1.097240573 1.03874454 1.064451089 1.105363527 1.135860102 85826226 alkb Roseobacter sp. MED193 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 0.869460886 0.824476588 0.826226588 0.888560697 0.808509665 0.823396978 0.831759965 0.840321577 0.841091501 0.823728308 0.83863383 0.797154785 0.825252036 0.813345273 0.827776442 0.817222888 154244878 mhpa Xanthobacter autotrophicus Py2 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 1.142169692 1.07742798 1.084118466 1.103758358 1.114695808 1.087111772 1.099977428 1.086371666 1.099142832 1.084007095 1.081718541 1.113845554 1.02508246 1.037443518 0.990229087 1.042418051 1.097544456 1.09919847 306517163 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.88257973 0.88852684 0.847113994 0.884520293 0.87985437 0.922718444 0.892495166 0.898894994 0.842125734 0.902525036 0.872317743 0.89207349 0.85788071 0.85768866 0.930456324 0.886415468 0.958972395 329114754 tktA Acetobacter pomorum DM001 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acetobacter;species:Acetobacter pomorum; 0.900369576 0.899594031 0.833561191 0.928869824 0.899047995 0.905115136 0.881944271 0.869945665 0.866039318 0.920455827 0.895091116 0.925808931 0.835987702 0.865060691 0.82116411 0.910804417 0.868193998 0.936926157 288963245 arylest uncultured sludge bacterium Organic Remediation Aromatics Other aromatics superkingdom:Bacteria; 0.811492739 0.841709029 121495586 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.913936544 0.890551458 0.911344288 0.896140653 0.832207775 0.902988074 0.844702925 0.91388258 0.893801153 0.919640269 0.863822901 0.858384532 0.79297394 0.88801307 0.815612936 0.807035245 0.885313301 0.925530166 163746029 nhh Oceanibulbus indolifex HEL-45 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanibulbus;species:Oceanibulbus indolifex; 0.997079628 1.033704485 1.03786901 1.04498089 1.032207132 1.033574104 0.951890937 1.019790494 1.010357106 0.945354595 0.959111913 1.02078055 0.961231742 0.898320857 0.94165218 0.978421404 1.014484294 1.0337073 118472935 catechol Mycobacterium smegmatis str. MC2 155 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 1.241026963 1.220409078 1.199851749 1.190299467 1.169232799 1.210014602 1.16686568 1.198981868 1.189939917 1.181980318 1.18148111 1.184564775 1.153380683 1.143942647 1.146620526 1.174386729 1.220143531 1.219664722 116193993 RgaE Chaetomium globosum CBS 148.51 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 0.98053736 0.990518532 0.951135783 1.018381847 0.962369145 0.955016947 0.922303211 0.999114285 0.968309517 0.951437232 0.955248605 0.997504262 0.953292748 0.937261911 0.929769952 0.953033018 1.01494862 1.037579989 21229834 poba Xanthomonas campestris pv. campestris str. ATCC 33913 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas campestris; 0.903850832 0.866955985 0.918200336 0.956289834 0.8814805 0.882137545 0.959151342 0.942403432 0.928804596 0.848525174 0.899079824 0.910546754 0.881366725 0.82419457 0.821851598 0.861126916 0.951345911 0.855190315 15597475 arsc Pseudomonas aeruginosa PAO1 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 0.838900042 0.893892754 0.840300002 0.821222062 0.884897409 0.841605025 0.834222714 0.846243505 0.823567687 0.837961714 0.878417142 0.871610171 35212658 CsoS1_CcmK Gloeobacter violaceus PCC 7421 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Cyanobacteria;class:Gloeobacteria;order:Gloeobacterales;genus:Gloeobacter;species:Gloeobacter violaceus; 0.84913225 0.820997382 302466157 nagg Streptomyces himastatinicus ATCC 53653 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces himastatinicus; 1.014650138 1.064808889 0.976403019 0.956840205 0.940675506 1.03029819 0.956110435 0.938438456 0.958465865 1.008403475 0.977261609 0.958110269 0.913095872 0.90911125 0.897090754 0.958422145 1.002390031 1.040556777 356477818 amyA Mycobacterium thermoresistibile ATCC 19527 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium thermoresistibile; 1.045112239 1.05835488 1.033091431 1.043496363 1.05800186 1.038717453 1.079620473 1.059608258 1.062863197 1.05879782 1.038654856 1.04477735 1.00459877 0.986538527 1.005923243 1.019805662 1.082291915 1.057132683 21224618 acetylglucosaminidase Streptomyces coelicolor A3(2) Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 1.07868025 1.05831064 1.07615466 1.065175876 1.07363997 1.092240276 1.076321917 1.081155171 1.042196032 1.054480742 1.044858883 1.039587078 1.078499043 1.026809371 1.004132424 1.020755556 1.059784554 1.064730661 357199163 ppx Paenibacillus terrae HPL-003 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus terrae; 1.124414779 1.098191755 1.154574475 1.09170231 1.112424375 1.113585097 1.090950579 1.110062045 1.140082099 1.0864858 1.145732534 1.135350289 1.054616473 1.069567911 1.051497449 1.097632459 1.113641039 1.115322795 389577047 amyA Eubacterium cellulosolvens 6 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Eubacteriaceae;genus:Eubacterium;species:Eubacterium cellulosolvens; 0.786454294 0.813951706 0.846629691 0.820405126 0.817810177 0.818640093 0.813533451 160945094 ppk Faecalibacterium prausnitzii M21/2 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Faecalibacterium;species:Faecalibacterium prausnitzii; 0.984098242 0.957847556 0.971528198 1.000529187 0.972784854 0.970819152 0.976149677 1.001434375 1.003892198 0.988939429 0.962591195 0.981606824 0.913662246 0.95475617 0.936045712 0.949031264 0.957259157 0.967293462 378598982 pgk Sutterella parvirubra YIT 11816 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Sutterellaceae;genus:Sutterella;species:Sutterella parvirubra; 1.144566539 1.132657921 1.103662662 1.129015146 1.123928207 1.11579683 1.10076771 1.107927062 1.134615318 1.093402204 1.152201048 1.133520403 1.096636371 1.079780654 1.077314743 1.097800281 1.120639757 1.116866938 116000792 mg_chelatase Ostreococcus tauri Secondary metabolism Pigments Chlorophyll superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Mamiellophyceae;order:Mamiellales;genus:Ostreococcus; 0.928693542 0.933615903 0.872669557 0.932932648 0.908908991 0.907579808 0.892705155 0.882371949 0.932673824 0.854603403 0.854942521 0.901722898 0.861639342 0.855623918 0.829256833 0.904190795 0.936981421 0.950612664 378769237 ppx Pantoea ananatis LMG 5342 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea;species:Pantoea ananatis; 0.918007809 0.877723757 0.919307743 0.911924225 0.966003019 0.894603253 0.872228955 0.928595602 0.956368603 0.891926413 0.88244011 0.913155113 0.879503318 0.89723903 0.886136881 0.848955992 0.921338929 0.919327261 9949509 phn Pseudomonas aeruginosa PAO1 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 0.74510872 0.832628863 311105710 xylg Achromobacter xylosoxidans A8 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter;species:Achromobacter xylosoxidans; 0.789267311 0.891536191 0.840316575 0.874315945 0.845323103 0.890605653 0.79306061 0.815833459 0.853633188 0.807762663 0.835799774 0.907772521 0.898928134 373488331 codh Holophaga foetida DSM 6591 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Acidobacteria;class:Holophagae;order:Holophagales;family:Holophagaceae;genus:Holophaga;species:Holophaga foetida; 0.81830463 0.82323375 0.801371344 0.83889442 0.801439041 0.847463578 166028472 ppk Dorea formicigenerans ATCC 27755 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Dorea;species:Dorea formicigenerans; 0.98396671 0.968473093 1.010992356 1.03085624 1.02294522 1.05054033 0.996517051 1.020264146 1.01903601 0.982718254 1.047369048 1.026083356 1.002299518 0.97585167 1.049543711 1.048427647 1.025533213 0.953401359 14325459 mdlc Thermoplasma volcanium GSS1 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Archaea;phylum:Euryarchaeota;class:Thermoplasmata;order:Thermoplasmatales;family:Thermoplasmataceae;genus:Thermoplasma;species:Thermoplasma volcanium; 0.936511737 0.967011583 0.855711678 0.956861672 0.982635746 0.997606019 0.912185884 0.902943824 0.864332229 0.966023358 0.904903723 0.972588249 0.970776301 0.996858433 0.959286542 0.933365429 1.015101588 0.936302698 120405358 pcpe Mycobacterium vanbaalenii PYR-1 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 0.952318646 0.925551234 0.919687968 0.914132228 0.952553493 0.97725187 0.943304768 0.89800848 0.898408882 0.941158526 0.883485202 0.921160464 0.967592921 0.922086225 0.9744219 0.964626537 0.939430537 1.010589302 302679170 p450aro Schizophyllum commune H4-8 Organic Remediation Aromatics polycyclic aromatics superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 1.075504601 1.010303988 1.042743586 1.061612304 1.023249808 1.038629442 1.018625692 1.002050462 1.060695597 1.062577935 1.071151077 1.036938646 1.011913879 1.005443646 0.985448572 0.997530942 1.093839123 1.054339151 21110665 xylanase Xanthomonas axonopodis pv. citri str. 306 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas axonopodis; 0.932602307 0.890263157 0.927314126 0.946223141 0.92852239 0.942915076 0.880078212 0.988122224 0.938847775 0.893239729 0.862294581 0.88353385 0.895890871 0.883637458 0.931125104 0.919893938 0.943377467 0.936712282 77799786 one_ring_12diox Burkholderia gladioli Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 0.937966887 0.926404663 0.889504866 0.952130065 0.914686209 0.906702584 0.886482715 0.88825493 0.912745152 0.890050196 0.901242481 1.028962925 0.88057498 0.856367781 0.879233798 0.871145218 0.925410564 0.972276434 357408389 amyA Streptomyces cattleya NRRL 8057 = DSM 46488 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces cattleya; 1.660764233 1.606866448 1.598566719 1.596711768 1.567054335 1.661540113 1.565392774 1.590080459 1.571479489 1.55730953 1.579414841 1.55633752 1.556259035 1.542991467 1.54608836 1.567502022 1.631650806 1.576449976 387859149 amyA Mesotoga prima MesG1.Ag.4.2 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Mesotoga;species:Mesotoga prima; 0.888877946 0.85582427 0.850528402 0.871479638 0.875820824 0.892347452 0.809720975 0.87151936 0.848110822 0.847763589 0.811883252 0.858400951 0.803866571 0.884701227 0.875217 226312559 nbac Brevibacillus brevis NBRC 100599 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Brevibacillus;species:Brevibacillus brevis; 0.915695062 0.919143628 0.954685728 0.968986782 0.968151268 0.92146756 0.924387303 0.911485498 0.965354096 0.932453148 1.03560247 0.987725187 0.860248202 0.865603935 0.895094421 0.862351947 0.92632469 0.957955206 177841087 CsoS1_CcmK Opitutus terrae PB90-1 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 0.897660029 0.811399437 0.847469028 0.927879547 0.824301662 0.849773903 0.874186833 0.878279986 0.815275362 0.843278991 0.822590563 0.833507093 0.819505255 0.905050392 0.892440363 156066928 endoglucanase Cellulomonas flavigena Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas; 0.987924577 0.96592047 0.943194249 1.028893795 0.974539714 0.98936923 1.03309611 1.027237312 1.008062745 0.980004971 0.943153071 0.959428949 0.956362673 0.958557435 0.962441324 0.939510025 0.994496049 0.964720359 257056648 poba Saccharomonospora viridis DSM 43017 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora viridis; 0.833420102 0.796761448 0.819581003 0.771017118 0.791154583 0.788952647 0.818702774 0.837122407 0.857301303 341925993 ppx Chitiniphilus shinanonensis Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Chitiniphilus; 1.13611904 0.975662873 0.976502256 0.995997257 1.077951672 1.126631529 0.90346649 0.987592426 0.976500202 0.970376123 0.925236221 0.934885735 0.972519719 0.924643879 0.975848765 0.969222839 1.29114268 0.99138292 182416029 urec Opitutus terrae PB90-1 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 0.872731359 0.862394055 0.909153448 0.859642583 0.841610716 0.851565539 0.858280669 0.865614978 0.866314999 0.895745533 0.867196633 0.884901202 0.846885405 0.822003557 0.775245086 0.886037963 0.901117511 0.872865973 116748490 aps_apra Syntrophobacter fumaroxidans MPOB Sulfur adenylylsulfate reductase NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophobacteraceae;genus:Syntrophobacter;species:Syntrophobacter fumaroxidans; 1.296362892 1.285525343 1.270246203 1.29573242 1.269571165 1.26895648 1.263049032 1.255846222 1.269013467 1.24646399 1.272475087 1.283656678 1.249456203 1.205492411 1.225378391 1.26786772 1.275435832 1.254209669 340551736 ppk Collimonas fungivorans Ter331 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Collimonas;species:Collimonas fungivorans; 0.822705957 0.817492184 0.782117079 0.8461779 0.945157059 0.804040277 0.867039222 0.886629514 0.917271844 0.791804112 0.833992261 0.828407039 375095435 bphF1 Saccharomonospora marina XMU15 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora marina; 1.146181735 1.181867878 1.112066304 1.156783076 1.098581689 1.168127482 1.158571717 1.155108881 1.138599871 1.132645936 1.102600464 1.156531789 1.064043772 1.092777781 1.062381635 1.087834101 1.154481784 1.164469993 76056949 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.829567202 0.8239151 0.825450555 0.825468531 0.795750259 0.804155583 0.801015218 0.85974532 0.813180372 0.810642039 237858257 GAPDH_Parabasalia Foaina nana Other Phylogenetic NA superkingdom:Eukaryota;order:Cristamonadida;family:Lophomonadidae;genus:Foaina; 0.867894192 0.832103328 0.87163008 0.873438829 0.79981232 0.847888514 0.856035729 0.885577618 0.912669559 0.880283996 0.853583675 0.893906452 0.831815014 0.878754419 0.834772996 0.845535545 0.860055423 0.86291891 45386121 narg unidentified bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.923085866 0.938744077 0.959905425 0.945642376 0.933059813 0.934268602 0.97513159 0.96847161 0.938965919 0.950549585 0.975180342 0.957028231 0.899974729 0.905867418 0.886306374 0.91468964 0.933266097 0.931904574 170734622 mdld Burkholderia cenocepacia MC0-3 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cenocepacia; 0.992753226 0.980783558 0.97590183 0.991744931 0.994523919 1.010560739 0.969416778 0.964631834 0.963773857 0.999035228 1.004152613 0.957606638 0.92893502 0.960815311 0.924354225 0.893181675 0.967809399 1.011698937 225194037 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.917169774 0.899400397 0.880641901 0.925294512 0.877653905 0.868163798 0.843914502 0.900766161 0.878383535 0.878275268 0.895078072 0.895287687 0.831277639 0.846334556 0.87604997 0.88846732 0.886599813 0.915208818 160361072 chrr Delftia acidovorans SPH-1 Metal Homeostasis Chromium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 1.379947378 1.341334564 1.370341998 1.364162883 1.334722305 1.37876605 1.352152951 1.378501103 1.345633127 1.34078939 1.331994952 1.372924011 1.310152365 1.299840195 1.305717932 1.339415376 1.355004497 1.325690713 237807995 amyA Tolumonas auensis DSM 9187 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Tolumonas;species:Tolumonas auensis; 1.000186038 0.956868302 0.99107056 0.985101625 0.958311355 1.011401975 0.913239714 0.953088011 0.955062898 0.96927178 0.947953146 0.955586382 0.924559953 0.946229414 0.819996527 0.921648649 0.990894131 0.998908188 177840770 cysJ Opitutus terrae PB90-1 Sulfur Reduction NA superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 0.994412602 0.999030209 0.975333321 0.954235126 1.006913034 0.993910815 1.017032767 0.998452354 0.974908526 0.965657862 0.981857335 0.98645772 0.972500768 0.935525097 0.920593906 0.915403596 0.977429938 0.956011135 158424506 mhpa Azorhizobium caulinodans ORS 571 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Azorhizobium;species:Azorhizobium caulinodans; 0.905728422 0.901220164 0.897481809 0.898158815 0.845459339 0.928791887 0.895562647 0.895028375 0.805900997 0.814376738 0.922548408 0.941018319 399231907 chnb Mycobacterium smegmatis str. MC2 155 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 0.952640001 1.068002253 0.918262116 0.957298581 0.928704779 0.919061211 0.961662521 0.93430609 0.910662787 0.90988622 0.929828144 0.943496378 0.924785574 0.841227225 0.835743422 0.90120552 0.933413407 1.000377235 307700793 terc Mobiluncus mulieris FB024-16 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Mobiluncus;species:Mobiluncus mulieris; 1.310939215 1.296445112 1.285737595 1.299089739 1.281073415 1.312874684 1.296415611 1.308382596 1.294228245 1.2848383 1.288322273 1.291926969 1.247937717 1.225068147 1.244319371 1.292451214 1.320904778 1.286103252 119026577 amyA Bifidobacterium adolescentis ATCC 15703 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium adolescentis; 1.163395861 1.048222221 1.091997103 1.102452574 1.1062083 1.130295497 1.117237508 1.126346136 1.116534958 1.099270466 1.067951698 1.119881139 1.034094048 1.029662107 1.027554033 1.086348365 1.119883639 1.106571935 291441089 pectinase (pectate_lyase) Streptomyces ghanaensis ATCC 14672 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces ghanaensis; 1.391520334 1.369214358 1.374680914 1.371872859 1.420574213 1.423825839 1.353533475 1.33621828 1.371251062 1.349335372 1.358228426 1.370826202 1.370860811 1.327609711 1.360476113 1.360824602 1.377134037 1.358419082 206678282 soxY Rhodobacterales bacterium HTCC2083 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 0.819282768 0.843188458 0.763715427 0.840454601 0.846081605 0.817939381 0.810033843 0.830625279 0.85759248 0.878813379 310764079 dehh Achromobacter xylosoxidans A8 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter;species:Achromobacter xylosoxidans; 1.10658169 1.06915805 1.038694218 1.061640633 1.008142991 1.056041179 0.995590821 1.040536787 1.067127298 1.032343409 1.029865075 1.026699249 1.02333303 1.026803955 0.979017274 1.017738381 1.063210259 1.03415911 393165366 terc Alcaligenes faecalis subsp. faecalis NCIB 8687 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Alcaligenes;species:Alcaligenes faecalis; 0.91849297 0.946546272 0.918151903 1.001646308 1.003584508 0.983117079 1.016788158 0.920911561 0.987627851 1.013380104 1.029616715 1.024951788 0.993210017 0.98082138 0.950777093 0.972164644 0.923340491 0.955984725 154154796 terc Parvibaculum lavamentivorans DS-1 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Parvibaculum;species:Parvibaculum lavamentivorans; 1.104550062 1.076477429 1.063981493 1.087794943 1.02589165 1.048870492 0.999827108 1.045626541 1.111243871 1.042096952 1.045464986 1.065635148 0.999953426 1.01834749 0.985960605 1.015337696 1.0816257 1.066621173 283481772 mcra uncultured methanogenic archaeon Carbon Cycling Methane Methanogenesis superkingdom:Archaea;phylum:Euryarchaeota; 0.894137937 1.1521241 0.887024826 0.922362834 0.858712497 0.922164182 0.877473101 0.852787526 0.872079981 0.934413237 0.826894858 0.876972824 1.030690437 0.86593101 0.863025295 0.936184513 0.864891686 0.918046515 148975269 chitinase Vibrionales bacterium SWAT-3 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales; 0.880080307 0.878446162 0.856229806 0.911963684 0.911069075 0.892071844 0.892375425 0.899885455 0.891128655 0.903671088 0.879170888 0.889925944 0.892874254 0.859099807 0.821399529 0.891607558 0.887790252 0.870762312 212633497 nrfa Shewanella piezotolerans WP3 Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella piezotolerans; 0.893032207 0.930405431 0.972342765 0.941006434 0.976752417 0.984003637 0.969482556 0.949713064 0.946687142 0.950028139 0.973383581 0.935373294 0.914190855 0.962878537 0.916259901 0.880385496 0.940313477 1.004782607 152981778 soxY Janthinobacterium sp. Marseille Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Janthinobacterium; 0.79807441 0.776050624 4886552 hbh Pseudomonas sp. Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria; 1.399975547 1.385201315 1.337666446 1.347838664 1.319457765 1.364307236 1.300367553 1.326783013 1.327540803 1.327834768 1.32365795 1.320033649 1.307337359 1.294316011 1.273830777 1.297412819 1.362917383 1.36066377 94549834 ara Acidobacteria bacterium Ellin345 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Acidobacteria;genus:Candidatus Koribacter;species:Candidatus Koribacter versatilis; 0.817226207 0.812297605 0.859216023 0.828150332 0.848895651 0.912827631 0.817565391 0.814183285 0.814999486 0.84059807 381373860 amyA Actinoplanes missouriensis 431 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes;species:Actinoplanes missouriensis; 1.070502394 1.012647089 0.982591963 1.075274606 1.029471844 1.021526659 1.019400363 1.026061183 1.021956437 0.984649658 0.965966344 1.012256284 0.988114133 0.933127316 0.967455794 1.052601075 1.066984001 1.025881955 260421400 GAPDH_Calvin Citreicella sp. SE45 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Citreicella; 1.035797921 1.04937999 0.989333758 1.015923197 1.024940306 1.086369162 1.011998193 0.948565115 1.020890579 1.039915215 1.101046355 1.003011739 0.993915918 1.014737704 0.99713034 1.01877384 1.050278603 1.042532004 126470038 bphc Rhodococcus rhodochrous Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 0.993701001 1.010845206 0.947879735 0.974591235 0.950163363 0.953231796 0.908532611 0.913920745 0.970993437 0.980765403 0.955163703 0.941713723 0.896283556 0.885839717 0.872755824 0.907178905 0.982101801 0.997785962 94471259 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.984168121 0.982962813 0.958706466 0.997956686 0.991781688 0.993712815 0.978934457 0.969868001 0.98867851 0.940369557 0.946016217 0.976948117 0.963569305 0.912370996 0.935237235 0.952834982 1.016224905 0.979834766 350560259 GAPDH_Calvin Thioalkalivibrio thiocyanoxidans ARh 4 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio;species:Thioalkalivibrio thiocyanoxidans; 1.429219943 1.395663338 1.374302956 1.372515661 1.39375785 1.448121355 1.361811195 1.350161301 1.336963111 1.370271309 1.362624931 1.349506189 1.354590294 1.36246325 1.363489583 1.354267723 1.438679966 1.385674461 94415004 terc Pseudomonas aeruginosa PA7 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 0.868090381 0.822468668 0.83538294 0.814639112 0.889001534 0.838606182 0.848018748 0.85739805 0.820671883 0.809067229 0.888175136 0.832196548 0.837870801 0.793247892 0.818049012 0.843675545 403211219 cmci Kineosphaera limosa NBRC 100340 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dermatophilaceae;genus:Kineosphaera;species:Kineosphaera limosa; 1.096950451 1.086069317 1.092225412 1.101258965 1.075592971 1.074649147 1.072194692 1.091496654 1.065081677 1.036726372 1.074525702 1.053457617 1.028621919 0.987980117 0.993767079 1.026226363 1.081880837 1.041785786 350601461 urec Halomonas sp. HAL1 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas; 0.805377977 0.904001168 0.857942992 0.857605373 0.834126018 0.829494964 0.909298042 0.824761099 0.988100364 0.885738749 0.851530463 0.898420638 0.947973811 0.879206738 0.841498094 0.880447499 219952231 nitrilase Methylobacterium nodulans ORS 2060 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 1.093346734 1.034239029 1.037092473 1.079000614 1.096499509 1.072385607 1.056221792 1.085265913 1.050151755 1.06428418 1.047054096 1.071509393 1.045056082 1.063714126 1.028735347 1.091247662 1.068836079 1.028590736 308177680 amyA Arthrobacter arilaitensis Re117 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter arilaitensis; 1.005284189 1.007786672 0.969318598 0.983454102 0.959623024 1.001747353 0.957637701 0.951332228 0.995151626 1.000546245 1.011336742 1.016318904 0.937432844 0.997855788 0.927075042 0.918283629 0.991262086 0.99390901 118173735 urec Mycobacterium smegmatis str. MC2 155 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 0.959329027 0.999762075 0.953446541 0.967424278 0.947039331 0.965742768 0.974309894 0.966623773 0.932935993 0.987769133 0.884497687 0.98419611 0.837797772 0.916895043 0.815600506 0.924831574 0.924728317 0.891022429 119897238 nasa Azoarcus sp. BH72 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 0.888269908 0.949126058 0.860142707 0.918229192 0.863985517 0.891291271 0.877218994 0.881486791 0.897838548 0.871018584 0.882244333 0.888398357 0.89287812 0.944108182 0.912953628 0.839197075 0.900529594 0.927388222 372281874 alkb Oceanicola sp. S124 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola; 1.116315457 1.07110421 1.114799633 1.109692698 1.010881128 1.093093509 1.042789169 1.07394606 1.107751974 1.068461086 1.053417598 1.089816937 1.050006722 1.031970987 1.045940757 1.044069033 1.120072132 1.081833484 167752017 amyA Alistipes putredinis DSM 17216 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Rikenellaceae;genus:Alistipes;species:Alistipes putredinis; 0.919289927 0.957931033 0.911757521 0.969835952 0.896093336 0.975336347 0.926349994 0.948329842 0.941210383 0.873834387 0.905034654 0.914698251 0.917805243 0.928123179 0.891105426 0.896942497 0.936218195 0.95152935 158313257 tfda Frankia sp. EAN1pec Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 0.882438635 0.877347746 0.84828225 0.833305099 0.807010278 0.822609865 0.850601288 0.868716056 0.887253211 386422904 tmoabe Thiothrix nivea DSM 5205 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Thiotrichaceae;genus:Thiothrix;species:Thiothrix nivea; 0.897347972 0.872045615 0.908162494 0.92064087 0.852107955 0.861390852 0.828341242 0.866981555 0.908032536 0.872068638 0.85816325 0.876302268 0.834728257 0.87784965 0.864860307 0.905601637 0.828894476 77378622 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.85636322 0.832055956 0.858291937 0.799139377 0.790511749 0.885411252 0.830900639 0.863721566 0.82536275 334335677 ara Isoptericola variabilis 225 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Promicromonosporaceae;genus:Isoptericola;species:Isoptericola variabilis; 1.266861203 1.289066324 1.234591653 1.265746274 1.241586274 1.289206999 1.223722775 1.260761402 1.255957615 1.276261451 1.230736901 1.254131502 1.203969359 1.246867449 1.213605519 1.227756929 1.2528788 1.238894115 296930644 amyA Starkeya novella DSM 506 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Starkeya;species:Starkeya novella; 0.849783186 0.855996034 0.894951452 0.880537331 0.820432179 0.835388114 0.869893367 0.874979441 0.871888087 0.797620679 0.863988335 0.808937982 0.81994676 0.812742057 0.890341366 0.881756008 59892666 nifh uncultured forest soil bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.94326495 0.933893786 0.931200191 0.966085317 0.879186926 0.905023943 0.889816746 0.924781896 0.94307951 0.91804711 0.901029185 0.917859015 0.869626675 0.865109335 0.901419566 0.89963695 0.947657678 0.938781257 222436393 tktA Labrenzia alexandrii DFL-11 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia alexandrii; 0.822249688 0.815303705 307586380 tehb Burkholderia sp. CCGE1003 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 0.996995914 0.998025552 1.003703415 1.010780658 0.979027407 1.015611022 1.004512134 1.023311689 0.991900354 0.999358307 0.99019087 0.989818623 0.972595217 0.989616119 0.960080724 0.985917428 1.016745355 1.014342027 254788460 xyla Teredinibacter turnerae T7901 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;genus:Teredinibacter;species:Teredinibacter turnerae; 0.824104835 0.876015572 0.834495043 0.847664665 0.825140912 0.809878569 0.841724089 0.869592234 336296197 rgl Paenibacillus mucilaginosus KNP414 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 1.070085448 0.972538384 0.963217769 1.025122521 1.010859576 0.991525553 0.984038325 0.981295611 1.023273608 0.961551449 0.962012756 0.985021461 0.937458109 0.905381315 0.902484319 0.943414903 1.004987345 0.989080895 157804858 aps_apra sulfur-oxidizing bacterium DIII5 Sulfur adenylylsulfate reductase NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 0.804656004 0.872607648 0.81285189 0.802024503 85704852 tktA Roseovarius sp. 217 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 1.169010886 1.156934185 1.143764166 1.161077963 1.094619767 1.110341216 1.093337946 1.133113548 1.135951781 1.115608356 1.106047027 1.14622213 1.120323949 1.093232648 1.086118087 1.100955511 1.137739275 1.12701321 296264235 GAPDH_Calvin Roseomonas cervicalis ATCC 49957 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Roseomonas;species:Roseomonas cervicalis; 1.389880513 1.342562278 1.345829839 1.290938786 1.28050435 1.235867338 1.203180459 1.226388218 1.318942572 1.311066074 1.313585737 1.297212325 1.295655558 1.267923309 1.274530315 1.215457812 1.361789367 1.33790216 393719697 linb Sphingomonas echinoides ATCC 14820 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas echinoides; 1.2127558 1.196842662 1.180057799 1.187150024 1.172281518 1.209563119 1.182135907 1.194612564 1.178400523 1.175735135 1.169152249 1.179101443 1.163317032 1.164320691 1.156863827 1.177293999 1.191011652 1.174047816 3805971 amyA Streptomyces griseus Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 0.950284363 0.983992892 0.982338584 0.939267889 0.976192358 1.02787991 1.013556142 0.892152903 0.962890905 1.026470811 0.907211261 0.902691911 0.90651015 0.986641022 1.033284521 0.909449941 1.00239938 1.008241482 2944191 axe Penicillium purpurogenum Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces; 0.790541873 0.792343423 302035821 gdh Candidatus Nitrospira defluvii Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Nitrospirae;class:Nitrospira;order:Nitrospirales;family:Nitrospiraceae;genus:Nitrospira; 0.993173257 0.871462566 0.993960306 1.005232883 0.946144403 0.995239245 0.935666631 0.965669501 0.982472546 0.966880695 0.959678673 0.934430259 0.906694951 0.974206985 0.899631624 0.908789814 1.00404443 0.962725277 111153558 gdh Frankia alni ACN14a Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia;species:Frankia alni; 0.803998304 0.792563901 0.849277809 0.783403419 0.817774427 0.83054811 0.835794835 0.786754914 0.806575376 0.850090276 0.799692001 0.796180665 0.808689223 0.90338685 392417552 amyA Mycobacterium chubuense NBB4 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium chubuense; 0.98930894 1.035911934 0.971001971 1.03040031 1.020446913 0.94817331 0.942804545 0.965364979 1.011251189 0.978578654 0.959824006 1.033168496 0.953380656 0.936996811 0.879446864 0.936654139 0.977751325 1.033550495 242123429 b_lactamase Desulfovibrio salexigens DSM 2638 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio salexigens; 0.839975218 0.825538961 0.823616162 0.845695874 0.804952602 0.835067413 354570475 phn Mesorhizobium australicum WSM2073 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium australicum; 1.013373874 1.006152711 0.970009501 0.99473788 0.943825258 1.009034915 0.934302259 0.964352399 0.974249052 1.001086389 0.980748083 0.980327351 0.91191747 0.981862169 0.917075276 0.937566094 1.032304009 0.991966983 388585237 dehh109 Microvirga sp. WSM3557 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Microvirga; 1.146475491 1.08409549 1.091435495 1.155953797 1.085740105 1.137740336 1.120082261 1.1144253 1.155613432 1.086365509 1.081539987 1.124123168 1.059506139 1.057560758 1.025583172 1.071822516 1.086902847 1.064205059 388590953 exaa(moxf) Microvirga sp. WSM3557 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Microvirga; 0.950532162 0.993995598 0.988587814 0.982430754 1.00783214 1.034470722 0.962907518 0.929497727 0.955957685 0.973119136 0.959082538 0.944283665 0.966234131 0.999777765 0.980067637 0.964076901 0.99454824 1.0323741 239932330 ara Streptomyces ghanaensis ATCC 14672 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces ghanaensis; 0.780644645 0.792727488 0.830790534 0.812571447 0.848517515 385742670 aoxb Bradyrhizobium sp. WSM1253 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.991840706 0.929232996 0.928425435 0.871384066 0.851552451 0.812417071 0.864343776 0.863775716 0.840908172 1.040050672 0.921609442 0.926639584 0.887796008 0.887952723 0.894127156 0.915522428 399021994 poba Herbaspirillum sp. CF444 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herbaspirillum; 0.773378814 0.805020797 0.84470911 0.791205424 84788778 B_lactamase_A Erythrobacter litoralis HTCC2594 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter;species:Erythrobacter litoralis; 0.957231895 0.956766072 0.971266864 0.96773031 1.001570835 0.933667936 0.997262547 0.983602138 0.996809247 0.943443802 0.951357841 0.957868536 0.927744862 0.898825396 0.847923514 0.893881116 0.944681279 0.946007104 422314525 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.898409625 0.861848915 0.837894313 0.894022412 0.810580679 0.877117049 0.885941767 256592139 phytase Cyanothece sp. PCC 8802 Phosphorus Phytic acid hydrolysis NA superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 0.82621808 1.006133 0.766954784 0.839642078 0.823156752 0.837050258 0.80743612 0.847538551 0.757749318 0.835035591 28855617 ppk Pseudomonas syringae pv. tomato str. DC3000 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 1.204184169 1.08525818 1.177298462 1.18659264 1.174145005 1.29324283 1.100620452 1.052673117 1.107145492 1.148888642 1.160634782 1.160475322 1.112742528 1.183434992 1.137028798 1.165289867 1.167831406 1.117837805 119951498 atzb Arthrobacter aurescens TC1 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter aurescens; 0.999086637 1.121391905 0.986386995 1.021710368 1.017508459 1.07605212 1.05151297 0.950738958 1.010070257 1.031943541 1.023124175 0.96391009 0.94500544 1.032787281 0.92340055 1.047318729 1.023275136 1.051837449 196226211 arsc Chthoniobacter flavus Ellin428 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Verrucomicrobia;class:Spartobacteria;genus:Chthoniobacter;species:Chthoniobacter flavus; 0.801821184 0.802715304 0.845220492 0.809713079 0.824704279 0.855068322 0.819702791 0.895542473 0.844209294 0.798345191 0.841117448 0.849952391 328809536 endoglucanase Verrucosispora maris AB-18-032 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Verrucosispora;species:Verrucosispora maris; 1.168587055 1.224553721 1.190643038 1.14487769 1.099715657 1.158782244 1.070343317 1.125908223 1.128237576 1.126116492 1.115780434 1.132526194 1.064153957 1.099624887 1.050835108 1.111257754 1.147519762 1.118345109 84691156 amyA Parvularcula bermudensis HTCC2503 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Parvularculales;family:Parvularculaceae;genus:Parvularcula;species:Parvularcula bermudensis; 1.135378567 1.10373208 1.143332584 1.126018978 1.159987865 1.16744922 1.149899552 1.133799258 1.17432629 1.184042346 1.158609788 1.16095759 1.128306023 1.154790722 1.124544558 1.147729298 1.142097375 1.165367647 359399952 cysI Novosphingobium pentaromativorans US6-1 Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium pentaromativorans; 0.85266444 0.870711387 0.875570601 0.820626237 0.825697382 0.873715584 0.812850252 0.828374219 0.788621979 0.817843132 0.874383966 0.884257018 0.901551552 255923395 pcag Actinosynnema mirum DSM 43827 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Actinosynnema;species:Actinosynnema mirum; 1.145103377 1.136266137 1.10411759 1.149449241 1.123757923 1.1326117 1.09794714 1.100078914 1.098031846 1.090256841 1.099124023 1.125769653 1.112151404 1.088138625 1.092438151 1.114544926 1.127022559 1.114804172 89033282 mer Escherichia coli Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia; 1.179474392 1.043333633 1.006388617 1.046494142 1.007677616 1.190287045 0.982229766 1.002700961 1.004966634 0.997378169 1.013351296 1.000207914 1.003177107 0.966267336 0.98453905 1.012141212 1.120106927 1.029944522 376384739 amyA Klebsiella oxytoca 10-5243 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella oxytoca; 1.040052223 0.933764042 1.035574413 1.081880929 0.999330227 1.076618949 1.055775523 1.0095078 1.045291568 1.000201558 1.051556994 1.002588591 1.058741814 1.00933591 0.95441794 1.009529302 1.08293325 1.000584176 198273197 rgh Bacteroides plebeius DSM 17135 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides plebeius; 0.847095961 0.852918422 0.856912719 0.858580416 0.858648051 0.853230664 0.871105718 0.849795587 0.859499535 0.83531368 0.887590592 0.875317739 0.866113057 0.868544871 0.848184823 113877828 ppx Sinorhizobium medicae WSM419 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 0.918845835 0.873776932 0.829977145 0.941794395 0.848934834 0.840584775 0.926113749 0.847562315 0.834521018 0.877456307 0.851838965 0.903451809 0.930855756 0.811830185 380837268 mannanase Sphingomonas sp. JB13 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 0.827344547 0.805144667 0.825209557 0.8002616 0.826279678 0.85277489 0.803517151 0.886860624 0.858717732 0.815199928 257056700 ppx Saccharomonospora viridis DSM 43017 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora viridis; 1.334807524 1.311828433 1.30965844 1.300941111 1.286311507 1.309609121 1.268415991 1.302183922 1.30093021 1.294797177 1.293923645 1.309022399 1.27249152 1.227555522 1.263020285 1.278988614 1.325027769 1.289232873 220964589 mdld Caulobacter crescentus NA1000 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter vibrioides; 1.011977272 1.018709324 0.967391742 1.010585118 0.984531505 0.979461607 0.943955439 0.973363191 0.94829463 0.974079479 0.967762235 0.970146915 0.974024026 0.966953384 0.952823433 0.963983297 1.01412451 1.007044016 206560132 mdlb Burkholderia cenocepacia J2315 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cenocepacia; 0.786326704 0.874825231 170941809 protease_aspartate_fungi Podospora anserina S mat+ Carbon Cycling Carbon degradation protein superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Lasiosphaeriaceae;genus:Podospora;species:Podospora anserina; 1.141697747 1.116442894 1.068623015 1.111228828 1.082721355 1.154929107 1.072931375 1.060003154 1.071968937 1.110213848 1.099584378 1.051845992 1.050384963 1.090287544 1.031663239 1.060740639 1.136120671 1.127953192 330993229 tktA Gluconacetobacter sp. SXCC-1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter; 0.938290379 0.931633906 0.970523763 0.928639529 0.960906528 0.957120126 0.975774723 0.953049414 0.983020044 1.024135993 0.988137026 0.963901316 0.916819518 0.923028836 0.892476917 0.905577723 0.980409555 0.973128314 90954583 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.252296784 1.20726418 1.213799339 1.211348913 1.203674126 1.183055096 1.174294925 1.195417696 1.20556038 1.201177976 1.224375632 1.21577184 1.169316107 1.158616756 1.16845809 1.183092944 1.189948289 1.190173543 294012841 nirb Sphingobium japonicum UT26S Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium;species:Sphingobium japonicum; 0.846034149 0.811829114 0.832064305 0.876101632 0.821747532 0.854382754 0.829006738 0.859855263 0.809259701 0.829800617 0.828264286 0.860150355 0.798041719 224944207 ppx Corynebacterium matruchotii ATCC 33806 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium matruchotii; 0.943594703 0.839657119 0.898326576 0.920265008 0.903444923 0.931206996 0.919634107 0.8947253 0.912634474 0.911409142 0.915468165 0.834699361 0.812606371 0.856310468 0.791432641 0.842665601 0.864448304 0.899492181 385763560 dsrB uncultured bacterium ws101A12 Sulfur sulfite reduction NA superkingdom:Bacteria; 0.877827704 0.837301051 0.849195167 0.849297994 0.898305495 0.825999987 0.879462422 0.894110195 0.835606595 0.846981991 0.862686785 0.842932461 0.832852371 0.861389385 0.868981781 0.901424609 247547205 ara Paenibacillus sp. JDR-2 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 0.817881992 0.812384655 0.855463404 329746444 fthfs Selenomonas sputigena ATCC 35185 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas sputigena; 0.971013815 0.96444087 0.975257966 0.995043454 0.981550512 0.967247115 0.964967898 0.972627027 0.964846448 0.95320291 0.969378116 0.968931552 0.943343031 0.919432317 0.900497646 0.946257784 1.030701931 0.975604127 221728823 catb Diaphorobacter sp. TPSY Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax ebreus; 0.857085582 0.812215326 0.868746846 0.803787061 0.835835266 0.81083623 0.837727042 0.821862025 0.809249386 0.796810696 0.832754784 295398411 cda Aerococcus viridans ATCC 11563 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Aerococcaceae;genus:Aerococcus;species:Aerococcus viridans; 1.217017937 1.193153584 1.202955163 1.224458531 1.204946588 1.233771534 1.219898564 1.233531032 1.206787916 1.219016824 1.200498196 1.230523636 1.181333329 1.198652479 1.191388169 1.19826527 1.187115566 1.203399604 227290132 glucoamylase Humicola grisea Carbon Cycling Carbon degradation Starch superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;genus:Humicola; 1.297517807 1.20407634 1.236750034 1.245909472 1.213255791 1.275412954 1.23550656 1.247406901 1.236817139 1.219151371 1.222295009 1.217049024 1.202068894 1.176063268 1.181837383 1.170570529 1.295600553 1.218578808 311286862 alginase Pseudomonas fluorescens WH6 Carbon Cycling Carbon degradation Alginate superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 0.911500824 0.891697454 0.864992345 0.883154666 0.872506206 0.867284007 0.875696203 0.845870152 0.899353539 0.895123364 0.903859297 0.915218936 0.8480756 0.904414724 0.857437567 0.901583505 0.910326825 86282167 xylanase Rhizobium etli CFN 42 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 1.17740441 1.164044011 1.178238013 1.144160307 1.105617846 1.097118575 1.091290327 1.106021642 1.143747325 1.161525306 1.148953205 1.150874183 1.108376928 1.089130164 1.088004577 1.097001248 1.133937844 1.148093491 358752126 amyA Granulicella mallensis MP5ACTX8 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Granulicella;species:Granulicella mallensis; 0.805541977 0.772528834 186911824 aps_apra Candidatus Thiobios zoothamnicoli Sulfur adenylylsulfate reductase NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Candidatus Thiobios; 0.824445833 0.779566831 0.813818596 0.847363627 0.774642539 0.822278207 254822999 alkb Mycobacterium intracellulare ATCC 13950 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium intracellulare; 0.803250121 0.795069147 227543193 gdh Corynebacterium glucuronolyticum ATCC 51866 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium glucuronolyticum; 0.775614823 0.848542475 0.869564599 0.824495067 0.862180737 0.877654781 0.812880332 0.797048144 0.860026616 179343034 tktA Methylobacterium populi BJ001 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium populi; 1.152607105 1.163846775 1.136881797 1.178952626 1.152081367 1.174055842 1.135647048 1.136877768 1.127084217 1.114839205 1.140906764 1.139276936 1.136468461 1.096301534 1.09834169 1.118287469 1.180507456 1.14278994 323365200 nifh uncultured microorganism Nitrogen Nitrogen fixation NA 1.309516458 1.321597516 1.311255351 1.305451156 1.29959051 1.310338621 1.27991855 1.273204236 1.276783323 1.285768842 1.298528308 1.308628969 1.298977861 1.265713505 1.279072411 1.261460095 1.298035597 1.310693531 63081980 nosz unidentified bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.364105576 1.359908685 1.339620415 1.336468872 1.332045546 1.367463179 1.333976842 1.33078778 1.307736348 1.320186359 1.332438989 1.333442206 1.316069948 1.304660494 1.300821668 1.335786496 1.338075613 1.320945974 392520471 linb Rhizobium leguminosarum bv. trifolii WU95 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 1.33815563 1.332043637 1.314486234 1.318776371 1.314635012 1.339705406 1.328475774 1.311380414 1.353153099 1.297927645 1.276638146 1.328525846 86555596 ppx Synechococcus sp. JA-3-3Ab Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 0.861887401 0.868687352 0.806630075 0.849369032 0.820558848 0.846752387 0.828843773 0.77942128 0.853952215 0.846167358 0.821674608 0.80328351 0.889969691 0.852032013 0.897375739 29833735 ppx Streptomyces avermitilis MA-4680 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 0.986856199 0.994566635 1.008023309 0.997313381 0.982824593 0.961670498 0.941409504 0.98197917 1.004487293 0.972101394 0.958954552 1.002330627 0.933096695 0.983590738 0.958423307 0.981703126 0.982592709 0.964369967 116695701 mer Ralstonia eutropha H16 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 0.764741599 0.859622599 0.815300864 0.832737696 0.824977764 0.875722258 0.8408065 0.792483003 0.8020843 0.832075133 0.84379231 217504384 mer Methylocella silvestris BL2 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Methylocella;species:Methylocella silvestris; 1.123795186 1.151875143 1.096476353 1.139923319 1.114210962 1.070698114 1.091230252 1.078742886 1.162883354 1.152575572 1.111745845 1.141809003 1.088113664 1.049352929 1.030977624 1.078448799 1.173794464 1.177673036 83814446 amyA Salinibacter ruber DSM 13855 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;order:Bacteroidetes Order II. Incertae sedis;family:Rhodothermaceae;genus:Salinibacter;species:Salinibacter ruber; 1.225841734 1.238894394 1.188199222 1.199017784 1.193623238 1.231729245 1.195515713 1.179902936 1.16829048 1.173016947 1.203664398 1.183831926 1.182120485 1.165697563 1.172987808 1.18459418 1.211854788 1.197005758 388256683 atzb Cellvibrio sp. BR Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio; 0.955867363 0.994402847 0.939695054 0.933312333 0.913327121 0.965880454 0.932832799 0.944598793 0.918453976 0.962663141 0.917339691 0.933971976 0.926324613 0.947782514 0.940039997 0.956886588 0.973139446 0.966416328 6179922 dsrB Solar Lake Mat Clone9065 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 0.9797238 0.931648356 0.962496671 0.99119181 0.954007744 0.996505717 0.988798068 0.992531447 0.970938818 0.952704291 0.899006975 0.939345948 0.938478965 0.896226965 0.853475769 0.911358759 0.9784873 0.984488889 177671597 ppx Micrococcus luteus NCTC 2665 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Micrococcus;species:Micrococcus luteus; 0.772511822 0.797591947 0.805931384 0.789770488 0.779229117 0.794420299 0.824168151 338821542 alginase Agrobacterium tumefaciens F2 Carbon Cycling Carbon degradation Alginate superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 0.889031799 0.866368386 0.867083297 0.870639817 0.814628373 0.847575275 0.828608428 0.840025826 0.867506922 0.918244321 0.885114772 0.862722488 0.836179236 0.874243628 0.848214883 0.841137579 0.84664138 0.862837159 188579535 tktA Methylobacterium populi BJ001 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium populi; 1.003935261 1.069026578 1.002298626 1.026922982 1.038850103 1.095991551 0.958306837 0.977118225 0.939505634 1.049938024 0.980249854 1.010586655 0.998645391 1.030256782 0.969009406 1.040376609 1.032517022 1.029186592 91790351 mdld Polaromonas sp. JS666 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 0.983586095 1.000830899 1.005325543 1.026367194 1.011781928 1.04313526 1.020030291 1.02508698 1.025522123 1.04409458 1.016526478 0.998529173 1.006383549 0.976054545 0.947775364 1.007417714 1.038698502 1.025376951 14026768 hbh Mesorhizobium loti MAFF303099 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 1.058759364 1.016976306 1.028270853 1.037608967 0.980407419 1.054564626 1.064982614 1.004440541 1.061435886 1.033869897 1.049251606 1.036142102 1.012518758 1.006905331 0.971273657 1.060080987 1.048382862 1.014090142 290572046 arsc Stackebrandtia nassauensis DSM 44728 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Glycomycetaceae;genus:Stackebrandtia;species:Stackebrandtia nassauensis; 0.898091312 0.877272124 0.809295057 0.825934111 0.873165834 0.792711226 0.835458385 0.824432342 0.816625685 0.931546174 0.843709721 0.901275568 214030093 PRI Ruegeria sp. R11 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 1.005373125 0.989150321 0.830128203 0.87156794 0.938746673 0.987093668 0.948298243 0.96820703 0.907443359 0.958344347 0.911304242 1.021511119 1.036030225 0.926290954 0.884884925 1.037125195 1.008981419 1.027358219 3157736 nifh unidentified nitrogen-fixing bacteria Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.791427322 0.805757085 0.81677564 0.851029242 0.867180998 0.853146347 0.785589469 0.80406357 0.813799214 0.802355034 0.792617071 0.822424413 114539885 pgk Fulvimarina pelagi HTCC2506 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Fulvimarina;species:Fulvimarina pelagi; 1.266066695 1.258000668 1.215534564 1.256238909 1.214315111 1.270015935 1.18635094 1.236752594 1.217659962 1.20827537 1.209552528 1.224589408 1.199595092 1.199220853 1.180676186 1.203111762 1.27359509 1.240782711 206685279 ppx Rhodobacterales bacterium Y4I Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 1.278546523 1.248830137 1.260522069 1.27127832 1.252446729 1.260494418 1.248809183 1.297085295 1.271568126 1.280532012 1.266506147 1.279385852 1.235721187 1.225622894 1.219054611 1.246028933 1.245426358 1.258091096 347309296 tutfdg uncultured bacterium Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria; 0.931608815 0.965387025 0.916514619 0.915083061 0.92426223 0.927081193 0.897875436 0.891317504 0.887622077 0.945518313 0.915998988 0.92863075 0.921646844 0.90827745 0.883622644 0.916624138 0.956255485 0.94672052 94471237 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.990944042 0.981848724 1.019999205 1.011363684 1.027797319 0.992745578 0.998940329 1.013110626 0.983268995 1.053808014 1.010457374 1.018021019 0.987923775 0.980836438 0.959697438 0.965547644 1.017357242 1.014611286 197341619 exochitinase Streptomyces sp. SPB74 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 1.097265568 1.096957995 1.068727652 1.104604966 1.060165642 1.094001335 1.064071328 1.083469816 1.076279668 1.075176953 1.071178397 1.098796165 1.0499429 1.034028167 0.987958046 1.034047078 1.0969276 1.072672684 89334795 atza Desulfitobacterium hafniense Y51 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 1.087234479 1.097151963 1.113252024 1.127052453 1.103376849 1.095370764 1.089032371 1.100556892 1.083574642 1.104978232 1.081944046 1.090700698 1.088450999 1.054417232 1.033796971 1.057630206 1.079947161 1.108521688 5531409 alkj Pseudomonas putida Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.832477284 0.783020896 0.795466598 0.816534047 0.798131504 0.829897944 0.798962281 0.787601567 0.803666448 0.788932133 133778528 endochitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 0.813944497 0.869460788 0.902114103 0.817832786 0.861542248 0.98209338 0.858078524 0.813877969 0.780409092 0.961796407 0.856943391 0.854189037 0.852224624 0.847005606 0.89362148 0.796516959 0.876086658 88180631 phospholipase_A2_fungi Chaetomium globosum CBS 148.51 Carbon Cycling Carbon degradation Phospholipids superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 1.136088326 1.11753682 1.106344291 1.142600141 1.095487001 1.116628843 1.107432745 1.130154006 1.109865933 1.106475606 1.072994313 1.134113521 1.069556941 1.089624601 1.082704358 1.094042846 1.115835317 1.11807257 214044111 ppx Roseobacter sp. GAI101 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 1.41997351 1.378008399 1.359537629 1.409396914 1.328675287 1.404241225 1.356935733 1.388694659 1.362110315 1.34434112 1.351276568 1.355838075 1.325291204 1.327427195 1.324023125 1.34890678 1.400194181 1.33657891 77378519 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.778097527 0.828138221 0.802019739 0.839957459 78693202 dehh109 Bradyrhizobium sp. BTAi1 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.995914305 1.02587544 0.914447677 0.957638462 0.987220495 1.001212418 0.925831064 0.97338979 0.97603355 0.970788215 0.922644488 0.948873332 0.974704477 0.966333588 0.933137428 0.969205154 1.027723753 1.008590839 196195102 linb Alcanivorax sp. DG881 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax; 1.005463001 0.981578051 0.98977592 0.975737736 0.981713373 0.992507169 0.961955237 0.971874278 0.988681818 1.004831712 1.012947197 0.969435909 0.947264183 0.980688974 1.000703996 0.973695184 0.97773787 1.008186822 94471283 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.007058106 1.001483841 0.965724967 0.98206433 0.933452665 1.000721892 0.973427735 0.981521339 0.984363834 0.982494568 0.931891019 0.987755013 0.898993348 0.923382615 0.862253896 0.919026474 0.979557417 1.007379296 363616393 amyA Subdoligranulum sp. 4_3_54A2FAA Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Subdoligranulum; 0.956247162 1.012015632 0.980776299 0.977265336 0.994200221 0.991929612 0.927229482 0.977554376 0.954765272 0.969360407 0.945545001 0.969551502 0.935756292 0.982451482 0.932013876 0.969525895 0.992713032 1.01750171 290962153 urec Streptomyces scabiei 87.22 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces scabiei; 1.227605506 1.197089543 1.181107115 1.183932247 1.185909643 1.173840551 1.16642022 1.158378593 1.201238148 1.207602304 1.195478069 1.194605616 1.174415954 1.1301575 1.118984421 1.146647474 1.240733105 1.212177116 152987507 arsc Pseudomonas aeruginosa PA7 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 0.993408908 1.026289496 0.940560803 0.995003763 0.983008979 1.017388892 0.942365716 0.89921928 0.983094548 0.970173927 0.950195169 0.966415784 0.917326515 0.953870315 0.922428759 0.940243215 1.034982416 1.045258331 309395666 glucoamylase Stigmatella aurantiaca DW4/3-1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 1.067874604 1.074839603 1.06226412 1.061535151 1.072147739 1.066308615 1.053114554 1.04105319 1.064731198 1.067532951 1.007194931 1.01204978 0.994687943 0.991592237 1.013245329 0.973999373 1.087505035 1.101897296 365291682 fccab Bradyrhizobium sp. ORS 375 Sulfur Sulfide Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.915544629 0.801362148 0.859568396 0.903979395 0.884455363 0.876661632 0.897161185 0.858725976 0.891635749 0.884202416 0.911726426 0.828032373 0.785495556 0.838918721 0.953001742 0.853967789 239806525 amyA Geobacillus sp. WCH70 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 0.910777416 0.839739201 0.849893613 0.893710409 0.837015316 0.832534154 0.836122724 0.918039131 0.834137774 0.851209753 0.873151964 0.869309783 0.841796163 323469260 terc Arthrobacter phenanthrenivorans Sphe3 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter phenanthrenivorans; 0.931249755 0.894007396 0.836673137 0.97275561 0.824569792 0.871463013 0.83069074 0.862326257 0.961975762 0.84314306 0.876899812 0.902357805 0.839808325 0.850041453 0.868533019 0.942478163 0.85219452 145570245 one_ring_12diox Pseudomonas stutzeri A1501 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 1.144874602 1.150297649 1.053239564 1.133118976 1.093711648 1.155606201 1.05399569 1.100446532 1.112093673 1.109336172 1.06450309 1.091401829 1.081367905 1.074941478 1.027755529 1.075824763 1.136957618 1.145566351 223999185 nitrite_reductase_protist Thalassiosira pseudonana CCMP1335 Nitrogen Assimilation NA superkingdom:Eukaryota;phylum:Bacillariophyta;class:Coscinodiscophyceae;family:Thalassiosiraceae;genus:Thalassiosira;species:Thalassiosira pseudonana; 0.920112667 0.971491062 0.974705997 1.067843344 1.038747227 0.980562066 0.979485654 0.972238914 0.993102665 0.975814167 0.918094828 1.002819824 0.991146271 0.960636901 0.90161657 0.972981344 0.976231164 0.982669446 147886084 phenol_oxidase uncultured bacterium Carbon Cycling Carbon degradation Lignin superkingdom:Bacteria; 1.194922295 1.057559102 1.052643345 1.142548804 1.042331466 1.103848201 1.137924066 1.089738598 1.072036195 1.062770593 1.062356418 1.085406004 1.049714792 1.088276302 1.05188833 1.114296176 1.073293846 1.084193209 3378201 tehb Eikenella corrodens Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Eikenella; 0.96748777 0.906422951 0.939804587 0.996849652 0.915365063 1.094489847 0.944807898 0.908780609 0.968421154 0.944389971 0.97503625 0.924502488 0.880926398 0.841129491 0.871040167 0.898215602 1.070637964 0.956900437 374425368 exaa(moxf) Bradyrhizobium sp. WSM471 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.79873306 0.81615488 0.802685594 0.805442953 0.835839828 0.815323244 121605619 vana Polaromonas naphthalenivorans CJ2 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 1.060568139 1.079398126 1.041423764 1.04780119 1.02004713 1.043472029 1.004731206 0.995076772 1.028370716 1.06336439 1.043036991 1.047794415 1.01586695 1.044360819 0.98568784 1.0299345 1.045618496 1.071395091 296426391 phenol_oxidase uncultured bacterium Carbon Cycling Carbon degradation Lignin superkingdom:Bacteria; 0.793320802 0.837663343 0.805701709 0.84377264 184192713 mer Burkholderia phymatum STM815 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 1.404602878 1.39965333 1.378262614 1.415248661 1.38698995 1.392599496 1.37862641 1.402035789 1.392365974 1.355708693 1.362315551 1.427546797 1.330801021 1.33530869 1.342058674 1.357567992 1.356632589 1.341043408 311226183 amyA Frankia sp. EuI1c Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 1.250180969 1.246663617 1.21380485 1.230256308 1.235016969 1.249335981 1.210142403 1.227014237 1.217390066 1.19670796 1.219140872 1.224455265 1.201073814 1.182455393 1.185098988 1.217936916 1.247734975 1.213201223 170739375 endoglucanase Methylobacterium sp. 4-46 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 0.962317207 0.94733016 0.981145738 0.964451123 0.975496601 0.948257885 0.99605979 0.971032323 0.971796287 0.940447235 0.97245004 0.970314078 0.924862735 0.917199588 0.922452283 0.912277575 0.960660349 0.950298294 148271944 amyA Clavibacter michiganensis subsp. michiganensis NCPPB 382 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Clavibacter;species:Clavibacter michiganensis; 0.91991007 0.895239504 0.955289551 0.890113735 0.86044614 0.843417707 0.85554188 0.906656251 0.879626334 0.920815341 0.961751866 0.859034869 0.866757209 0.844000364 0.834163806 0.917813981 0.904061777 225161054 fthfs Clostridium hylemonae DSM 15053 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hylemonae; 0.772769831 0.807163899 0.831649008 0.831395013 385679924 linb Amycolatopsis sp. ATCC 39116 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis; 0.953243849 1.005513729 0.978553976 1.0046065 0.941645694 0.969923922 0.883056301 0.935880253 0.94279651 0.934545977 0.933203348 0.952513357 0.920791374 0.945571239 0.873448017 0.914576059 0.985806139 0.988542187 255301038 fthfs Campylobacter showae RM3277 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter showae; 0.874832989 0.851456099 0.891844407 0.862121279 0.801501008 0.878265169 0.832939705 0.877078676 0.880300703 0.877597785 0.866327486 0.84285059 0.860316934 0.843308624 0.90948538 0.830945145 0.87494934 209401710 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.821615456 0.981781715 0.908081159 0.97864063 0.889675514 0.87588469 0.902475927 0.848707552 0.980794848 0.912481679 0.883913598 0.943985957 0.832332298 0.967960608 0.876763737 0.885444948 0.866470752 388488318 amyA Modestobacter marinus Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Geodermatophilaceae;genus:Modestobacter; 1.101062619 1.078138158 1.095896884 1.110098663 1.110234599 1.101024017 1.111209137 1.131884078 1.092644114 1.067882791 1.117995447 1.102679949 1.066112847 1.042639833 1.067264495 1.075639161 1.120261492 1.076239404 126706083 mer Rhodobacteraceae bacterium HTCC2150 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 0.888778124 0.91186187 0.851409227 0.897381346 0.861436777 0.883164968 0.854617368 0.844121061 0.930149777 0.840505267 0.892671082 0.876113881 0.833590724 0.853388799 0.83199863 0.901703714 0.910437719 299526568 arsc Hyphomicrobium denitrificans ATCC 51888 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium;species:Hyphomicrobium denitrificans; 0.981820547 1.062102483 0.939440999 0.988497146 0.99436753 1.050754214 0.942306306 0.934488898 1.015732436 0.984414746 0.919170016 1.00230732 0.962692088 0.919679546 0.914693827 0.971859921 1.044707 1.031472281 386000907 dsra Methanosaeta harundinacea 6Ac Sulfur sulfite reduction NA superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosaetaceae;genus:Methanosaeta;species:Methanosaeta harundinacea; 0.887177732 0.959239096 0.896168484 0.937439062 0.916802809 0.876659869 0.888728041 0.925444088 0.897485004 0.904028961 0.865733331 0.961123987 0.850561195 0.863636619 0.80951232 0.851875314 0.888496259 0.895542886 113200815 catechol_b Sphingomonas sp. C230 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 0.808028389 0.8811515 0.815308242 0.845359942 0.870989646 0.823541848 0.842553369 0.808825579 164643400 phenol_oxidase Laccaria bicolor S238N-H82 Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Tricholomataceae;genus:Laccaria;species:Laccaria bicolor; 0.992682122 0.923780312 0.920554671 0.95360898 0.926004671 0.898821713 0.92654815 0.932504776 0.915264046 0.911039407 0.937247917 0.93847415 0.922964034 0.92251869 0.905668634 0.906727542 0.963505873 0.908311535 189499412 sucD Chlorobium phaeobacteroides BS1 Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeobacteroides; 1.254174562 1.213892664 1.230815539 1.227942563 1.228936262 1.256555887 1.228774747 1.215054869 1.222413116 1.196581416 1.254890796 1.223514043 1.218973382 1.153165203 1.186902125 1.197177444 1.243853137 1.173468388 371940152 cda Bacillus licheniformis Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 0.769071702 0.79542374 0.789737721 0.797740446 0.824916052 378549849 catb Citricoccus sp. CH26A Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Citricoccus; 1.010589934 0.96518208 0.997481049 0.97659122 0.987690969 1.012817841 1.030054282 1.004112947 0.990604225 0.997222914 0.984431157 0.990539031 0.974998278 0.958876657 0.990848702 0.939966831 0.991030863 0.972967461 394487883 terc Turicella otitidis ATCC 51513 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;genus:Turicella;species:Turicella otitidis; 1.1751963 1.172588013 1.162230714 1.168650827 1.118758928 1.154680811 1.107741411 1.165079098 1.166162614 1.157967335 1.113337668 1.146441708 1.111764129 1.113583245 1.098915144 1.118542346 1.19340646 1.161741952 343918789 arsc Thiorhodococcus drewsii AZ1 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiorhodococcus;species:Thiorhodococcus drewsii; 1.08672628 1.106328109 1.061820472 1.097685575 1.06295321 1.110396696 1.081233644 1.09186986 1.045278663 1.060013364 1.022598347 1.06990735 1.001619848 1.020298451 0.961352093 0.993390964 1.077102859 1.078456484 227467048 tktA Rhizobium leguminosarum bv. viciae 3841 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 0.839655163 0.797750623 0.837110067 0.895457682 0.870597401 0.792760787 0.804098414 0.807420808 0.865775251 0.802877853 0.880597345 0.809202366 0.844844375 0.839473535 192764452 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.146259148 1.140618346 1.143276796 1.144599395 1.141207428 1.143289268 1.124700313 1.126705185 1.150737032 1.145289862 1.125782042 1.150699098 1.098844585 1.10533802 1.063196354 1.106186488 1.129152411 1.151654304 393180528 amyA Rhizobium leguminosarum bv. trifolii WSM2297 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 0.977783471 0.967661716 0.971155247 1.00392993 0.906257913 0.946639197 0.86513939 0.916974965 0.977800297 0.94176525 0.950794883 0.943678785 0.901525512 0.924282544 0.875804064 0.901496325 0.963383203 0.95503968 323530582 dsra uncultured bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.811842041 0.808663309 0.803435586 0.818792019 0.794953891 0.831886576 0.802242234 0.853088713 0.913977891 0.790714865 295414396 PRI Cyanothece sp. PCC 7424 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 1.000139208 0.94532281 0.947125091 0.967808886 0.973251678 0.977837172 0.968904696 0.945274187 0.984609991 0.973106656 0.989238326 0.976358078 0.935697037 0.911857754 0.874307321 0.925934592 0.959660485 0.942572865 338812097 bphF1 Acetonema longum DSM 6540 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Acetonema;species:Acetonema longum; 1.089261508 1.078052851 1.047825375 1.083464459 1.054887624 1.119346476 1.052938302 1.030596931 1.062027265 1.062393546 1.056360209 1.084045646 1.037238675 1.029883155 1.019228904 1.021648708 1.069657808 1.093142317 145238806 cellobiase Aspergillus niger Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 1.152793477 1.131164755 1.103551605 1.12629809 1.104500548 1.134195091 1.091415829 1.103457324 1.122538907 1.115427052 1.081435379 1.100251992 1.080898994 1.130490862 296923179 amyA Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium;species:Propionibacterium freudenreichii; 1.174970822 1.156561073 1.165549181 1.15853969 1.136879091 1.17549264 1.140676115 1.162176838 1.159163687 1.151967722 1.131689089 1.18049844 1.108148737 1.116544909 1.113338465 1.145667223 1.169770884 1.144010945 149817772 vana Plesiocystis pacifica SIR-1 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Nannocystaceae;genus:Plesiocystis;species:Plesiocystis pacifica; 0.842451213 0.901018413 0.903674362 0.898903935 0.900467636 0.92069292 0.93474919 0.923952141 0.867297636 0.869523909 0.910780212 0.8619341 0.875107511 0.813082807 0.880552378 0.897480422 257389187 endochitinase Halomicrobium mukohataei DSM 12286 Carbon Cycling Carbon degradation Chitin superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halomicrobium;species:Halomicrobium mukohataei; 0.899211293 0.939020345 0.844473381 0.96442408 0.923022877 0.857623281 0.853843396 0.846983717 0.87065592 0.824930996 0.854416994 0.85072818 0.932005553 114192360 endopolygalacturonase_fungi Aspergillus terreus NIH2624 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 1.296015217 1.230120381 1.254334882 1.29924835 1.225297918 1.308506738 1.268275906 1.223224781 1.256648803 1.229803627 1.24917338 1.249978622 1.238160914 1.237564647 1.230819571 1.262023227 1.296415638 1.223858065 43913 pula Klebsiella pneumoniae Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella; 1.006335805 1.004520436 0.964904797 1.022336297 1.001513972 0.989731536 0.991816339 1.004386172 1.007408816 0.977815273 0.954895383 1.001489304 0.975235542 0.953640725 0.947274808 0.973670781 1.024748372 0.990195921 378597503 fccab Sutterella parvirubra YIT 11816 Sulfur Sulfide Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Sutterellaceae;genus:Sutterella;species:Sutterella parvirubra; 0.776265934 0.849505558 0.812755382 0.815593572 342316556 aoxb uncultured bacterium Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 1.103135955 1.044854053 0.985327015 1.001221115 1.010445071 1.06652489 0.992364406 1.067570072 1.09913146 1.029013323 1.045819217 1.07067646 1.027606099 0.978031499 1.025532872 1.040636505 1.074248807 1.067985779 189204386 RgaE Pyrenophora tritici-repentis Pt-1C-BFP Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 0.89148035 0.851428907 0.883314229 0.887340922 0.889855882 0.815776197 0.85587043 0.869394841 0.820749765 0.903041892 0.782088142 0.8505069 0.808833725 0.9083616 0.863729343 338166073 bphF1 Cupriavidus necator N-1 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 0.824128217 0.805068432 0.840804204 0.831371162 0.849217104 0.796124804 0.804934953 0.829365999 0.829586296 0.817606991 169597295 phospholipase_D_fungi Phaeosphaeria nodorum SN15 Carbon Cycling Carbon degradation Phospholipids superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Phaeosphaeriaceae;genus:Phaeosphaeria;species:Phaeosphaeria nodorum; 0.778570992 0.845054388 0.810349605 0.865402373 0.834630175 0.862329734 0.852870923 0.835632094 0.833581922 0.844889359 0.85265918 0.830603406 0.84634761 0.817630312 0.810496017 0.872884761 171911022 cysJ Verrucomicrobium spinosum DSM 4136 Sulfur Reduction NA superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobiaceae;genus:Verrucomicrobium;species:Verrucomicrobium spinosum; 0.952576034 0.907510644 0.962953145 0.978147677 0.967244392 0.947271166 1.018547646 0.979290655 0.999411749 0.987228378 0.990002369 0.977653459 0.940458783 0.907899319 0.934743152 0.891794133 1.011586941 0.96785322 206576326 nirb Klebsiella pneumoniae 342 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 1.091194438 1.064184838 1.050540448 1.115917357 1.025317463 1.019384378 1.02957886 1.028536849 1.063838811 1.041427281 1.046477408 1.082371638 1.015720478 1.00619191 0.985368255 1.015875153 1.024954414 1.008103935 84787703 linc Erythrobacter litoralis HTCC2594 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter;species:Erythrobacter litoralis; 0.837099574 0.873833073 0.807743107 0.858478203 0.859697716 0.824458926 0.823220282 0.825541364 0.857231094 0.802673728 0.782434953 0.788764977 0.902959986 375160397 AACT_DiC4HB Pyrobaculum oguniense TE7 Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum oguniense; 0.899738328 0.826226459 0.866864303 0.88630172 0.924970578 0.954411738 0.962070015 0.875130308 0.896115091 0.888827191 0.874892008 0.851073795 0.911086549 0.793122056 0.854912608 0.951911652 0.827413942 383330295 amyA Mycobacterium phlei RIVM601174 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium phlei; 1.134701236 1.184102378 1.076747038 1.132212424 1.138371085 1.188245686 1.091878541 1.111009488 1.066687869 1.11618347 1.083872865 1.120806575 1.085197606 1.123772337 1.059774914 1.082014565 1.138283171 1.178920924 312879295 ppx Aminomonas paucivorans DSM 12260 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Synergistetes;class:Synergistia;order:Synergistales;family:Synergistaceae;genus:Aminomonas;species:Aminomonas paucivorans; 0.977500984 0.920277157 0.960770397 0.945366978 0.903451609 0.931577021 0.830760597 0.870053678 0.909639424 0.893258882 0.913280469 0.887754292 0.907034457 0.900229676 0.914348224 0.870001244 0.924249264 0.936771656 345004781 nosz halophilic archaeon DL31 Nitrogen Denitrification NA superkingdom:Archaea; 1.271195249 1.289782689 1.22819566 1.209004292 1.228085884 1.286982821 1.228567669 1.237627182 1.225156656 1.279004262 1.248768399 1.227448372 1.222319323 1.266489166 1.201312869 1.223159794 1.225124165 1.280090575 14719373 chnc Brevibacterium sp. HCU Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Brevibacteriaceae;genus:Brevibacterium; 0.778106047 0.83818585 335419524 PRK Salinisphaera shabanensis E1L3A Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Salinisphaerales;family:Salinisphaeraceae;genus:Salinisphaera;species:Salinisphaera shabanensis; 0.98525095 0.957414802 1.020515214 0.981871048 0.968706095 0.98396942 0.972001934 1.015668018 0.931719063 0.943221027 1.00444728 0.960230547 0.936623978 0.949413597 0.875977567 0.905108678 0.971183798 0.96186624 110637666 urec Cytophaga hutchinsonii ATCC 33406 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Cytophaga;species:Cytophaga hutchinsonii; 0.848558097 0.921187594 0.862356758 0.888826294 0.91814086 0.842926358 0.9227263 0.862716598 0.879816491 0.939039902 0.857294396 0.879418326 0.948618619 0.886479007 0.859107326 0.905841746 0.869534543 0.911783549 75992408 pcag Terrabacter sp. DBF63 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Terrabacter; 0.942807127 0.975273403 0.880600025 0.969403571 0.881236712 0.961197111 0.857628374 0.917241748 0.918281197 0.941769834 0.923754465 0.916600411 0.84804707 0.912388148 0.869242814 0.879475592 0.958910693 0.972468134 315602559 PRI Rhodopseudomonas palustris DX-1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 1.317649441 1.29104729 1.315428727 1.317324188 1.332139695 1.33470264 1.296314484 1.301691657 1.293803654 1.259549254 1.289265312 1.308523047 1.291766381 1.257383067 1.301248366 1.298957331 1.308509905 1.276969326 296115748 acetylglucosaminidase Gluconacetobacter hansenii ATCC 23769 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter hansenii; 0.854863323 0.883201993 0.911198889 0.917548116 0.847284647 0.819568097 0.861260304 0.862396015 0.862342842 0.81519077 0.838654121 0.886448818 0.844189281 0.826723721 0.842291517 0.918257195 0.84551995 256390573 alkb Catenulispora acidiphila DSM 44928 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 0.886724742 0.936186947 0.895305194 0.885703173 0.905506773 1.017929408 0.89382948 0.923052685 0.977900246 0.955361766 0.935001912 0.967985402 0.978127081 0.900727188 0.890535932 0.959990232 254465095 tktA Rhodobacterales bacterium Y4I Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 0.837637241 0.79719404 0.855186457 0.867129236 0.841371166 0.882368707 0.813222628 0.869779227 0.828440344 0.890320902 0.835765858 0.84798822 0.836397082 0.810889736 0.855051382 0.828034333 296927891 urec Starkeya novella DSM 506 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Starkeya;species:Starkeya novella; 1.145067744 1.132947933 1.129497646 1.126971661 1.118564097 1.137043947 1.116418962 1.113057092 1.137786939 1.12299402 1.14775405 1.127276885 1.099715845 1.099683722 1.072978205 1.125058259 1.117091727 1.138375105 66801967 narg unidentified bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.821734895 0.820268453 0.811861826 0.801540005 0.829843631 0.87637756 222543244 phytase uncultured bacterium Phosphorus Phytic acid hydrolysis NA superkingdom:Bacteria; 1.040083214 0.956805425 0.927061197 0.987644822 0.921529233 0.992808322 0.881278138 0.936935823 1.003382645 0.973078404 0.899793154 0.929177485 0.906358423 0.948928203 0.939610592 0.956097696 1.01633901 0.93079996 18389591 norb Roseobacter denitrificans Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 1.068495052 1.037345675 1.102410971 1.112576608 1.114881975 1.101295996 1.052540325 1.189289831 1.062542829 1.049780707 1.047821549 1.075659024 1.035187158 1.015871939 1.105502541 1.117069965 1.215234429 1.047490314 320008533 chitinase Streptomyces flavogriseus ATCC 33331 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces flavogriseus; 0.805647127 0.782991568 0.784284841 0.784564577 0.816552968 121589518 fccab Halorhodospira halophila SL1 Sulfur Sulfide Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Halorhodospira;species:Halorhodospira halophila; 0.800376806 0.854329092 0.828064632 0.808273078 0.817954001 0.869303967 91783709 nagg Burkholderia xenovorans LB400 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 0.968312947 0.921387166 0.956991705 0.920328993 0.910446126 0.841856985 0.861192578 0.853486005 0.955362696 0.870817173 0.899695223 0.862736808 0.873493158 0.909369099 0.857891025 0.817804892 0.954834681 0.954835185 254489200 vana Roseobacter sp. GAI101 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 1.002486102 0.986043858 0.991054063 0.985148145 0.997597751 0.987596583 0.995142692 0.988052621 0.980520209 1.001771182 0.982995154 0.972101812 0.967239721 0.976849842 0.940385199 0.895595213 0.971887503 0.987561273 349785348 cda Thermobacillus composti KWC4 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Thermobacillus;species:Thermobacillus composti; 0.857302124 0.797158418 63003125 one_ring_12diox uncultured soil bacterium Organic Remediation Aromatics Other aromatics superkingdom:Bacteria; 0.867394429 0.803275238 0.841241919 0.839330244 0.821307537 0.814719715 0.858299128 0.851798065 13423933 badh Caulobacter crescentus CB15 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter vibrioides; 0.871924916 0.9468564 0.943171922 0.94003189 0.938043659 0.968871785 0.878838585 0.862734535 0.911802486 0.887053932 0.851916706 0.878633165 0.924526968 0.878932389 0.839229754 0.9034508 0.948402511 0.959998995 257065176 fthfs Slackia heliotrinireducens DSM 20476 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Slackia;species:Slackia heliotrinireducens; 0.916005931 0.97148827 0.896123575 0.920124808 0.866275325 0.901859739 0.897792613 0.878005365 0.897451483 0.859011273 0.937564095 0.926830417 0.899856329 0.872030559 0.856184918 0.864277422 0.893143241 373248994 RgaE Bacillus licheniformis Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 0.935789237 0.862395313 0.836145647 0.948051469 0.825603 0.844723279 0.849017828 0.864490641 0.902505283 0.891613976 0.821838064 0.897000286 0.865760005 0.859646828 0.890032658 0.888337902 0.879211055 196177601 TIM Microcoleus chthonoplastes PCC 7420 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Coleofasciculus;species:Coleofasciculus chthonoplastes; 1.189965735 1.171799123 1.182173828 1.21281815 1.207700866 1.191076078 1.214277781 1.227638285 1.190650389 1.180554759 1.19807223 1.222858076 1.174057519 1.152132768 1.179571498 1.185739392 1.207517387 1.203898449 319415384 acetylglucosaminidase Bacteroides helcogenes P 36-108 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides helcogenes; 1.098488422 1.103023207 1.113154789 1.107334555 1.115434286 1.158155012 1.120025134 1.1257252 1.091298777 1.110352628 1.106451251 1.095759865 1.095536285 1.06746092 1.031927873 1.075595852 1.109993714 1.123506046 345012938 mannanase Streptomyces violaceusniger Tu 4113 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces violaceusniger; 0.886824133 0.934512674 0.890252024 0.863516459 0.889310526 0.913649453 0.869722946 0.833715513 0.879798238 0.840422845 0.872994719 0.852471701 0.82800974 0.858327259 0.877254041 0.965949032 357941071 nagg Burkholderia sp. YI23 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 1.173541824 1.16772851 1.118514893 1.155031722 1.090018001 1.130211234 1.106057181 1.127981164 1.130579947 1.150064531 1.102590643 1.148781894 1.081428353 1.083719136 1.048458341 1.118195271 1.140811204 1.157915312 398224218 poba Bradyrhizobium sp. YR681 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.802386727 0.828819741 0.908790865 0.835305011 0.869072387 0.871250936 0.932683854 0.8540066 0.863431271 0.841911213 0.82266046 0.867107549 0.792448457 0.836159614 0.822866423 0.857760189 364505619 hzsa uncultured anaerobic ammonium-oxidizing bacterium Nitrogen Anammox NA superkingdom:Bacteria; 0.993609058 1.095176218 1.020298683 1.019951216 1.015095218 1.033661747 0.996002739 1.023460252 1.021457867 1.01779978 1.019199473 1.038200404 0.954842242 0.968557815 0.944426216 0.93465538 1.008103638 0.977875143 329573290 xylanase Paraprevotella xylaniphila YIT 11841 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Paraprevotella;species:Paraprevotella xylaniphila; 0.869655417 0.879375522 0.818470565 0.838854976 0.815823866 0.810358299 0.850062374 0.901845396 0.925465947 0.841744174 0.823568348 0.810039277 0.854241517 0.89834359 156934741 pme Cronobacter sakazakii ATCC BAA-894 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Cronobacter;species:Cronobacter sakazakii; 0.846166176 0.788467282 0.795126837 0.7995806 218251368 dsra Mitsuokella multacida DSM 20544 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Mitsuokella;species:Mitsuokella multacida; 0.847926744 0.894448015 0.847993188 0.824169187 0.834201387 0.821509371 0.802240304 0.839168371 0.865130508 126704210 GAPDH_Calvin Rhodobacteraceae bacterium HTCC2150 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 1.212448486 1.203597661 1.196579532 1.204674239 1.212801581 1.203616749 1.188698478 1.204839515 1.193375732 1.194086068 1.169150428 1.214618753 1.156752911 1.171430115 1.163532384 1.177520659 1.209279374 1.182661454 359818547 cutinase Mycobacterium rhodesiae NBB3 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 0.794172969 0.829666702 0.833168558 0.837254167 0.852726396 0.815787156 0.809219966 0.859033421 0.837240147 0.82164983 0.822659272 0.887586393 28868949 atza Pseudomonas syringae pv. tomato str. DC3000 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 0.973419122 0.919701109 0.955598427 0.979039263 0.920917937 0.930516695 0.872026428 0.940816393 0.969995475 0.928398223 0.891120625 0.945761406 0.889178394 0.916149954 0.891107769 0.929656088 0.987466669 0.945410203 247537086 cysI Dickeya zeae Ech1591 Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya zeae; 1.351555866 1.325447334 1.312954195 1.309640275 1.296473093 1.343597112 1.297847404 1.304515423 1.301618278 1.309019754 1.295983015 1.299271613 1.299042095 1.28525128 1.278258091 1.307492221 1.332213249 1.316277662 84713304 pcpe Polaromonas naphthalenivorans CJ2 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 1.299692295 1.285518294 1.292510674 1.295716236 1.28890126 1.311947532 1.302342419 1.282844416 1.298236742 1.293262125 1.305514791 1.309125265 1.271805741 1.261174963 1.251522361 1.294931119 1.319031711 1.305681065 29652498 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.993386762 0.995784358 0.956866516 0.938250959 0.952126084 0.985110385 0.945378098 0.961412376 0.9431463 0.979488984 0.964190995 0.947192934 0.979140404 0.99369295 1.004578737 0.969396525 0.972874156 0.966942881 339500717 amyA Spirochaeta caldaria DSM 7334 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema caldaria; 0.96564188 0.955515815 0.957235941 0.968016736 0.964929068 0.96041191 0.938710212 0.925172108 0.981526147 1.021648099 0.969609285 0.966903189 0.940511095 0.937934002 0.92127774 0.929244879 0.956573245 0.96683966 295432816 xylanase Caulobacter segnis ATCC 21756 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter segnis; 1.241396665 1.224780452 1.208062093 1.221887709 1.193137868 1.253794276 1.160245956 1.183322962 1.215257656 1.204953112 1.208756353 1.240844364 1.187432623 1.216682759 1.177988935 1.188240324 1.224172064 1.202142601 126668643 urec Marinobacter sp. ELB17 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter; 0.984901082 0.873842967 0.810813662 0.819567156 66801831 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.99237378 0.987829169 0.971825007 0.998779336 0.986426844 0.99968602 0.97677327 0.943727232 1.032498997 1.001866829 0.992323138 0.993679037 0.965709487 0.916817486 0.892304181 0.981587742 0.974149838 0.974690498 154508931 amyA Actinomyces odontolyticus ATCC 17982 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces odontolyticus; 0.842465337 0.907626366 0.822337805 0.894507538 0.877302936 0.901613193 0.890440978 0.901912534 0.887569816 0.858320221 0.850973352 0.896590799 0.844424286 0.85008651 0.852248277 0.847782918 0.901770773 0.89203766 198262978 ppk gamma proteobacterium HTCC5015 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 1.014924474 0.985076978 0.975220717 1.005178833 0.948747786 0.985610572 0.949119921 0.981124414 0.993460407 0.984545676 0.951507276 0.979083711 0.942216434 0.952175087 0.904271831 0.946672261 0.994322558 1.005374936 149123273 pcag Methylobacterium sp. 4-46 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 0.966402179 0.975821656 0.960102572 0.973105333 1.006180903 0.963508245 0.953514666 0.941994751 0.957161236 0.977976872 0.970949078 0.96846268 0.97976572 0.969599234 0.913761573 0.966404123 0.975420184 1.010017304 324988348 acetylglucosaminidase Prevotella multiformis DSM 16608 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella multiformis; 0.901181281 0.952135839 0.961132569 0.892087372 0.912042725 0.908821344 0.881702425 0.896260871 0.923576602 0.939115339 0.90571797 0.853655852 0.903028831 0.870930264 0.958266247 0.970114811 329310610 ppx Alicycliphilus denitrificans K601 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Alicycliphilus;species:Alicycliphilus denitrificans; 1.273176887 1.243248825 1.211727181 1.230193388 1.216088866 1.25485384 1.209696676 1.205583966 1.231185727 1.216417227 1.228515841 1.228581542 1.221422533 1.189466491 1.199450994 1.224727109 1.239973673 1.208095255 13421197 linc Caulobacter crescentus CB15 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter vibrioides; 0.877704001 1.017004916 1.008900388 0.93652498 0.90404884 0.929698272 0.880042554 0.868031177 0.857664891 0.898287401 0.884350103 0.906868883 0.873521714 0.874401092 0.86380264 0.867210062 0.927266549 0.963985524 315444764 amyA Mycobacterium gilvum Spyr1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 1.161970002 1.172859827 1.1498184 1.217445882 1.124000445 1.235237496 1.165138246 1.186633357 1.187894824 1.186863915 1.169445859 1.209853625 1.179524823 1.177815125 1.173588092 1.198546987 1.211943699 1.17559817 183976694 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.902072802 0.902632679 0.90508605 0.877424601 0.913445851 0.889818145 0.869990842 0.940737774 0.872676543 0.897579275 0.886198483 0.924035182 0.839858815 0.893271347 0.849324759 0.882684327 0.858736037 0.877774045 291090366 fthfs Edwardsiella tarda ATCC 23685 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Edwardsiella;species:Edwardsiella tarda; 0.941595653 0.918335391 0.834799916 0.892882014 0.803188113 0.840186356 0.814405498 0.832379842 0.91310122 0.851150701 0.88142495 0.908789162 0.829073593 0.806876967 0.854161965 0.851423295 0.927519871 78093560 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.857992401 0.88823294 0.851865484 0.854131676 0.82942441 0.793302144 0.856969854 0.839658762 0.88195332 0.799814216 0.769467697 0.813174388 0.823183355 0.877969431 217504916 badh Methylocella silvestris BL2 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Methylocella;species:Methylocella silvestris; 0.938337112 0.881169222 0.93376659 0.946490133 0.960184797 0.902324939 0.97036437 0.91971737 0.960826122 0.928534298 0.908260341 0.912772168 0.852367761 0.83019772 0.881923154 0.814944099 0.911696031 0.903558199 296030169 ccmL Thermincola potens JR Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Thermincola;species:Thermincola potens; 0.794649118 0.779892095 0.795028382 0.816667136 0.781467863 0.801638948 0.799196963 0.807029315 0.808694488 0.806729973 0.847368683 121663856 pcpe Rhizobium sp. MTP-10005 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 0.836287472 0.839442406 0.849547007 0.806271412 0.846956846 0.867871233 148835307 TIM Vibrio shilonii AK1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio shilonii; 0.850098742 0.883814188 0.825759707 0.813440556 0.845433514 0.79205128 0.848599413 0.827502207 0.831104847 0.841568639 0.848706973 119954214 cutinase Mycobacterium vanbaalenii PYR-1 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 1.460947658 1.389252092 1.399602595 1.433615174 1.380333929 1.457737698 1.38884827 1.426859244 1.411823142 1.391325604 1.393976232 1.410409499 1.36989074 1.36464357 1.37231963 1.412524797 1.427824055 1.37423884 237808447 CsoS1_CcmK Tolumonas auensis DSM 9187 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Tolumonas;species:Tolumonas auensis; 0.78832 0.825646247 0.77382078 0.802908492 398039479 trze Novosphingobium sp. AP12 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 1.192598958 1.139527138 1.206051927 1.202027135 1.152419124 1.150070035 1.17358048 1.180110521 1.183695041 1.160546633 1.164328412 1.172917178 1.161644062 1.131111941 1.149854734 1.139909692 1.197166844 1.122487183 115367542 endochitinase Stigmatella aurantiaca DW4/3-1 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 0.846984339 0.791628752 0.815359826 0.805322888 0.827944219 374365565 B_lactamase_A Cupriavidus basilensis OR16 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus basilensis; 0.80372754 0.845473856 296426343 phenol_oxidase uncultured bacterium Carbon Cycling Carbon degradation Lignin superkingdom:Bacteria; 0.794258287 0.833691219 0.864857389 0.834369 0.815761127 0.836107357 0.816781674 93353268 terc Ralstonia metallidurans CH34 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 0.975022258 0.98968634 0.945442493 0.950348612 1.001372641 0.99650787 0.974530332 1.004002268 0.962052372 0.923633808 0.960651675 0.952196049 0.94019455 0.9325315 0.867255378 0.914375281 0.965912542 0.939383892 209960678 linc Rhodospirillum centenum SW Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum centenum; 0.98175314 0.913472294 0.963326602 0.951784328 1.008183604 0.923969243 0.99626654 0.962966953 0.95943376 0.969319698 0.976845589 0.953399596 0.942358423 0.902019266 0.894728042 0.90938107 0.936886857 0.913915072 51893507 arsm Symbiobacterium thermophilum IAM 14863 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XVIII. Incertae Sedis;genus:Symbiobacterium;species:Symbiobacterium thermophilum; 0.972681368 0.97041866 0.966957262 0.919050239 0.887683843 0.950871044 0.891700043 0.905054542 0.949559192 0.945247798 0.924647171 0.937750175 0.896693435 0.920822632 0.841700827 0.932553785 0.942376421 0.97788918 171057132 poba Leptothrix cholodnii SP-6 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Leptothrix;species:Leptothrix cholodnii; 1.122897383 1.125879718 1.06845256 1.081284162 1.038403043 1.098919481 1.039985036 1.078205528 1.072875807 1.084399592 1.051426007 1.090152059 1.020561762 1.052572864 1.02735095 1.076969314 1.072618629 1.117335411 149915958 GAPDH_Calvin Roseobacter sp. AzwK-3b Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 0.833077435 0.852728476 0.831692343 0.852685983 0.850615304 0.839269739 0.854879209 0.846219817 0.843897908 0.81118684 0.884317767 0.855614839 157285634 napa uncultured bacterium Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria; 1.033705683 1.021735669 1.006750763 1.02083039 0.930017399 0.978560616 0.913119316 1.009102728 1.041745484 0.983645396 0.971240671 0.977188795 0.907505791 0.95335791 0.918427875 0.950375234 1.049906999 1.047482018 294054147 beta_agarase Coraliomargarita akajimensis DSM 45221 Carbon Cycling Carbon degradation Agar superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;order:Puniceicoccales;family:Puniceicoccaceae;genus:Coraliomargarita;species:Coraliomargarita akajimensis; 1.105610101 1.099603474 1.059377352 1.154059511 1.04429699 1.087463724 1.075105215 1.105481817 1.108439331 1.100049233 1.073023099 1.083434749 1.047320541 1.031260701 1.043389983 1.072103132 1.096416212 1.093545565 34104878 cysI Chromobacterium violaceum ATCC 12472 Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Chromobacterium;species:Chromobacterium violaceum; 1.012711646 1.029251569 1.014584647 0.998436833 0.982150341 0.993428752 1.005712377 1.02887518 1.038241213 1.002108589 1.015535342 0.992121325 0.972496589 0.948495383 0.924520146 0.951084959 1.018615966 0.996793465 315312357 amyA Actinomyces sp. oral taxon 180 str. F0310 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 180; 1.03157009 1.053672318 0.991381385 1.035107264 0.995218063 1.032160257 0.971148321 0.99143006 0.98111745 1.011136777 0.956827308 0.996578266 0.937491345 0.995321224 0.902969156 0.950146875 1.023426865 1.075408685 294627601 exaa(moxf) Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas fuscans; 0.941229058 0.941479089 0.913286839 0.981196186 0.916827119 0.914497895 0.903946585 0.873050586 0.933571913 0.939086013 0.86389322 0.902929418 0.901433958 0.914223132 0.850675309 0.897801454 0.909798636 0.936912264 68510310 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.045860622 1.015864931 0.990910522 1.051127796 1.000263137 0.989351527 1.009655719 1.036092023 1.050459283 0.991675783 1.001226522 1.019146351 0.968503116 0.941105622 0.937996073 0.980187923 1.012775682 0.983865453 302694727 mannanase Schizophyllum commune H4-8 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 1.000725019 0.855285171 0.897196121 0.886757874 0.856047772 0.799098528 0.853709255 0.806134442 0.890948395 0.851340064 0.886339737 0.852776359 0.870082261 0.842982794 0.82066435 0.859415633 261338438 ppk Bifidobacterium gallicum DSM 20093 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium gallicum; 0.938224853 1.011962403 0.926518727 0.949166662 0.935810575 0.993477184 0.905240678 0.819310261 0.975874716 0.984783801 0.91786015 0.952430484 0.931321026 0.936646534 0.903308974 0.951730754 0.993312669 149202427 arsc Roseovarius sp. TM1035 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 0.94506455 0.982046843 0.939007934 1.008168437 0.997749204 1.017509121 1.0333275 0.983502755 1.012883238 0.986759063 1.026477964 1.02896598 0.986636383 0.952616576 0.999257319 1.057291743 0.943642334 1.011685138 73763012 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.141724567 1.088815884 1.123103444 1.114539504 1.065455526 1.186392626 1.016653947 1.065628583 1.118441672 1.06113895 1.058780816 1.070919167 1.037654232 1.052472165 1.041620169 1.02898101 1.174307879 1.084863222 302562176 amyA Streptomyces griseoflavus Tu4000 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseoflavus; 1.416733294 1.409517332 1.409821474 1.388747818 1.395816481 1.438543546 1.392144386 1.405537343 1.384585921 1.389348441 1.39490404 1.391554418 1.378549664 1.361785759 1.360819099 1.384294143 1.405610941 1.398114719 68536414 amyA Corynebacterium jeikeium K411 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium jeikeium; 0.806085571 0.795742578 0.858508193 0.841014144 0.862015625 0.833911544 0.83528494 0.829179866 0.800369935 0.785193013 0.815208396 0.955989781 353200490 chitinase Paenibacillus lactis 154 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus lactis; 0.95469937 0.967687251 0.92319807 0.945216557 0.954867774 0.942279685 0.907333896 0.952442801 0.951418823 0.96545853 0.90609475 0.928117897 0.916294351 0.912119219 0.941758426 1.005345604 0.950882042 0.982866091 259507917 cmci Corynebacterium efficiens YS-314 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium efficiens; 1.156472517 1.162271574 1.226085241 1.187745607 1.169492391 1.15202285 1.17591797 1.160070355 1.151575568 1.164269908 1.174190528 1.194957339 1.153171178 1.14780763 1.184466692 1.162507428 1.159998353 1.13851495 154316440 glucoamylase Botryotinia fuckeliana B05.10 Carbon Cycling Carbon degradation Starch superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Botryotinia;species:Botryotinia fuckeliana; 0.759146776 0.797212894 0.833462487 0.838234825 0.80976563 0.875486023 0.836597508 0.848785299 0.861414392 0.82751245 0.810257209 0.794074444 0.836503958 0.800360946 298549761 amyA Deinococcus geothermalis DSM 11300 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus geothermalis; 0.933462257 0.844986944 0.898486609 0.975456058 0.906104355 0.900301129 0.875686364 0.887006227 0.932147979 0.888914789 0.896743014 0.919901429 0.872950737 0.858627198 0.846511783 0.865782835 0.938291193 0.864493242 83849318 arsc Croceibacter atlanticus HTCC2559 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Croceibacter;species:Croceibacter atlanticus; 0.846429985 0.77018679 0.839637425 0.786161986 34102804 acetylglucosaminidase Chromobacterium violaceum ATCC 12472 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Chromobacterium;species:Chromobacterium violaceum; 0.920874446 0.986159635 0.91134467 0.951800584 0.984407425 0.96371055 0.932920977 0.921954617 0.947756791 0.923993283 0.931671139 0.917596911 0.911250457 0.936786883 0.931874382 0.935205258 0.984531033 0.994531443 45386231 narg unidentified bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.233683322 1.268238982 1.194788017 1.193561464 1.207555398 1.237291094 1.163924569 1.159812262 1.174455441 1.198266323 1.199236379 1.189393522 1.190890519 1.207617042 1.158917485 1.183233202 1.22013616 1.211152942 328529605 amyA Actinomyces sp. oral taxon 170 str. F0386 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 170; 0.876950423 0.861566536 0.832863571 0.886463711 0.836781783 0.83305193 0.882789031 0.880674961 0.794037983 0.846485016 0.820812029 0.79965717 0.852770611 327310619 APS_AprB Thermoproteus uzoniensis 768-20 Sulfur adenylylsulfate reductase NA superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Thermoproteus;species:Thermoproteus uzoniensis; 0.864268647 0.925698261 0.881230683 0.905452364 0.876615957 0.882759463 0.84365452 0.836775892 0.835964291 0.871367405 0.859954732 0.873758099 0.871655572 0.87050979 0.826455968 0.835087903 0.891029145 0.926190393 26989303 atzb Pseudomonas putida KT2440 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 1.096753424 1.023624738 1.031620562 1.04483662 1.000560638 1.016905831 1.006532487 1.076536442 1.047610089 1.008655128 1.01323379 1.044878881 1.000209446 0.995333195 0.98200322 1.014743344 1.065275865 1.013921574 21221249 cellobiase Streptomyces coelicolor A3(2) Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 0.990437377 1.003645222 0.944620011 0.981106364 0.966687837 0.983387808 0.966060008 0.922049138 0.949000567 0.995792916 0.962462657 0.98100692 0.969361409 0.984284011 0.949289408 0.983993082 1.034559117 1.031952664 115363955 cysJ Stigmatella aurantiaca DW4/3-1 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 1.076071133 1.081238629 1.061170895 1.11381262 1.059445827 1.090966912 1.053593347 1.086529327 1.056519194 1.061272499 1.055406938 1.072690018 1.080762199 1.030808651 1.049995807 1.046618765 1.101853206 1.051561642 255942725 phospholipase_B_fungi Penicillium chrysogenum Wisconsin 54-1255 virulence degradation NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 0.943614027 0.9126665 0.881666254 0.984833358 0.952193529 0.893942091 0.93168617 0.956949993 0.957849781 0.917035125 0.914924281 1.061323072 0.910541736 0.85302139 0.880108288 0.877123038 0.930920531 0.903470277 359733404 one_ring_12diox Rhodococcus pyridinivorans AK37 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus pyridinivorans; 1.031846706 1.005632218 0.986524194 0.947114919 0.916234788 0.88981777 0.840678937 0.909895317 0.959763356 0.958129787 0.925347116 0.907045402 0.922602378 0.9305556 0.909891351 0.902304116 0.988893829 0.977113419 302420831 alpha_galactosidase_fungi Verticillium albo-atrum VaMs.102 Carbon Cycling Carbon degradation Other superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticilium;species:Verticillium albo-atrum; 0.836183091 0.818422869 0.798645828 0.812867362 0.83618115 0.79555168 147829157 acetylglucosaminidase Clavibacter michiganensis subsp. michiganensis NCPPB 382 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Clavibacter;species:Clavibacter michiganensis; 0.814974731 0.849290579 0.84841714 0.850209285 0.863559816 0.81279493 0.78965409 0.832921782 0.805749477 0.825134191 0.83646766 0.829423935 4579699 catb Frateuria sp. ANA-18 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Frateuria; 1.153141683 1.118675375 1.090651961 1.159660285 1.142224206 1.157771767 1.109501491 1.133253934 1.12522761 1.090753951 1.12701458 1.123113638 1.08857884 1.093980527 1.119434791 1.113070321 1.160262227 1.114931302 332592161 fthfs uncultured bacterium Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria; 1.033495243 1.035474022 1.041517209 1.015500606 0.958966397 1.006993768 0.963759241 0.992132405 1.01488741 1.016736531 1.000138315 1.014709162 0.985069101 0.968440887 0.954410236 0.983366393 1.022534559 1.034867547 290745682 nirk Intrasporangium sp. 4LS1 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Intrasporangium; 0.774758615 0.844711096 0.790884944 0.847628527 0.827379757 0.807998044 0.812073471 0.809316738 0.81944291 0.833838188 0.865440131 372267228 chitinase Alteromonas sp. S89 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Microbulbifer;species:Microbulbifer agarilyticus; 0.92608703 0.906951952 0.859371383 0.78396989 0.887671802 0.917334746 0.81150768 0.798535891 0.936945308 0.808577922 0.80889129 0.827788215 0.908193848 0.955339108 0.836466426 0.78299172 1.002462855 383936701 arsc Rheinheimera nanhaiensis E407-8 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Rheinheimera;species:Rheinheimera nanhaiensis; 0.968432719 0.968350882 1.01236859 1.012259843 0.883549308 1.053521628 0.91905601 0.953216842 1.002218578 0.995644172 0.968079957 0.968287813 0.955807778 0.929021472 0.93938341 0.921187408 0.99586282 0.974228966 312961545 nirs Pseudomonas fluorescens WH6 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 1.219818853 1.237467919 1.185378177 1.193878913 1.180348078 1.239805401 1.149071509 1.149650717 1.19975535 1.20441273 1.175924746 1.17068872 1.156224101 1.187622407 1.159178356 1.166069052 1.230711362 1.203579891 255531507 xyla Pedobacter heparinus DSM 2366 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Pedobacter;species:Pedobacter heparinus; 0.794983565 0.869061126 226942607 codh Azotobacter vinelandii DJ Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Azotobacter;species:Azotobacter vinelandii; 0.980003194 0.989149771 0.966208538 1.002683433 0.958298951 1.015658474 0.972577463 0.976540668 0.961205033 0.980419396 0.964809675 1.011608621 0.945582915 0.929687131 0.916379806 1.152043981 0.96682897 0.989965327 82618379 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.77239272 0.815898353 0.809323484 0.825662544 0.859409411 0.810749666 0.806955792 0.865280833 0.815910885 0.814661157 0.776229749 0.870127864 209883189 arsc Oligotropha carboxidovorans OM5 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Oligotropha;species:Oligotropha carboxidovorans; 1.024010982 0.927073135 1.022675833 0.996482361 0.942378462 0.842078112 0.887279901 0.864801679 1.010424799 0.971445878 0.962861994 0.954548038 0.980118716 0.919955903 0.963675137 0.880299564 1.026927031 0.976148286 193997018 phytase uncultured bacterium Phosphorus Phytic acid hydrolysis NA superkingdom:Bacteria; 0.799687057 0.813088977 0.839242235 0.855745476 0.829189096 0.870232149 0.855370939 0.852047663 196185934 amyA Brevundimonas sp. BAL3 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Brevundimonas; 1.420009009 1.412148655 1.407369946 1.41345877 1.413722589 1.436099324 1.412444111 1.419787975 1.406311424 1.37436431 1.41554219 1.426658079 1.389639633 1.369193139 1.392371029 1.40943295 1.426297177 1.382148336 89347187 pgk Rhodoferax ferrireducens T118 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Albidiferax;species:Albidiferax ferrireducens; 0.965597188 0.863706823 0.782565337 0.819622021 0.839318407 0.84698955 0.768272064 0.848116241 219544325 amyA Chloroflexus aggregans DSM 9485 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aggregans; 0.969535516 0.953326434 0.915479081 0.96772061 0.856925479 0.923427554 0.880571985 0.926728432 0.954938924 0.940929625 0.921734001 0.912180611 0.869626336 0.889186247 0.88862447 0.902137412 0.982868172 0.967440176 26989095 cysI Pseudomonas putida KT2440 Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 0.990214234 0.98958684 0.984040971 0.974630728 0.964955744 0.989349309 0.98071328 0.981428552 0.967574592 0.984203161 0.865707571 0.949518502 0.934019135 0.898060197 0.879503338 0.890880807 0.96707258 0.988365434 407235087 nhh Burkholderia phenoliruptrix BR3459a Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phenoliruptrix; 0.871530437 0.853820703 0.883583793 0.873589828 0.845569811 0.86966804 0.855720499 0.828875983 0.843155855 0.88487387 0.824201135 0.849140149 0.804771179 0.810007609 0.852133202 0.884055389 90903279 aoxb uncultured bacterium Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 1.404571945 1.338994124 1.337990295 1.354613224 1.316885246 1.380853149 1.33078005 1.332857783 1.355506439 1.338568403 1.326961826 1.337845137 1.324714818 1.286622933 1.297279527 1.297632884 1.395040608 1.329395907 58616642 pcpe Achromobacter xylosoxidans Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter; 0.985330049 0.94334976 0.965435116 1.030839496 0.956185002 0.939341397 0.935490725 0.970214593 1.010793407 0.977473196 0.966599251 1.007174039 0.932540662 0.910272868 0.915968101 0.906495689 0.999913803 0.968881868 328929435 codh Methanosaeta concilii GP6 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosaetaceae;genus:Methanosaeta;species:Methanosaeta concilii; 0.938876152 0.911766712 0.82902723 0.961055911 0.833773587 0.872189588 0.825269537 0.855859701 0.885419906 0.854240349 0.818654636 0.889902304 0.805362291 0.856995271 0.824047997 0.820408244 0.930366886 0.894569973 359248618 nhh Mesorhizobium alhagi CCNWXJ12-2 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium alhagi; 0.793988918 0.815786255 0.829525212 0.811079069 0.833270959 0.806218805 0.814314143 0.811081717 0.821731413 383824679 amyA Mycobacterium xenopi RIVM700367 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium xenopi; 0.818912279 0.880869326 0.831566182 0.879245314 0.819420849 0.864581956 0.836265209 0.81297981 0.86458963 0.862183066 0.860502475 0.85349439 0.831301375 0.842386106 0.850121995 0.837460104 0.879110581 109632419 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.808553698 0.961519438 0.845358303 0.783927562 226455492 mg_chelatase Micromonas pusilla CCMP1545 Secondary metabolism Pigments Chlorophyll superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Mamiellophyceae;order:Mamiellales;genus:Micromonas;species:Micromonas pusilla; 0.909928515 0.914327018 0.898017113 0.951860172 0.878035702 0.941112709 0.96191033 0.921891862 0.908354896 0.885839041 0.881907713 0.941259345 0.881452655 0.853021642 0.86247233 0.874489304 0.915890029 0.94840632 118591660 soxY Stappia aggregata IAM 12614 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 0.955862824 0.968217703 0.966844313 0.975642394 0.954594546 0.973294698 0.946271566 0.971989971 0.919161328 0.955335834 0.94309602 0.917845514 0.985600349 0.991996587 146192973 soxY Bradyrhizobium sp. ORS278 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 1.142493984 1.112308688 1.132853393 1.120482364 1.097351304 1.12194369 1.093374159 1.109056076 1.123671966 1.098043338 1.134584118 1.103437383 1.072299543 1.057069505 1.051059999 1.064415477 1.12129097 1.0934403 254454395 TIM Octadecabacter antarcticus 238 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter arcticus; 0.81627232 0.845538559 0.821721364 0.773077639 0.835384927 0.84289137 0.78389836 0.828608683 0.845468105 148255077 soxY Bradyrhizobium sp. BTAi1 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 1.232233609 1.233808935 1.239723422 1.255905811 1.21272488 1.232437065 1.222118884 1.227729387 1.223602644 1.190765611 1.237189676 1.246480951 1.224939939 1.189047613 1.195088632 1.21673259 1.23403908 1.188469565 189495692 nitrilase Chlorobium phaeobacteroides BS1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeobacteroides; 0.782338705 0.817286263 335881688 amyA Rheinheimera sp. A13L Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Rheinheimera; 1.210376912 1.152366057 1.177892969 1.232744407 1.185448965 1.207600711 1.207241512 1.219528864 1.206301697 1.171937885 1.164933764 1.210151156 1.143484419 1.135282538 1.118219501 1.170417879 1.197405727 1.140892935 76802027 rubisco Natronomonas pharaonis DSM 2160 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Natronomonas;species:Natronomonas pharaonis; 1.066588587 1.004578867 1.026635485 1.068645303 0.964641115 0.981737585 0.972124097 1.026304826 1.052430462 1.002224094 1.021288008 1.048637398 1.011329557 0.956610081 0.969386328 0.974590071 1.056222139 0.999550365 257797304 arsm Desulfohalobium retbaense DSM 5692 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfohalobiaceae;genus:Desulfohalobium;species:Desulfohalobium retbaense; 1.290094393 1.258643195 1.248868181 1.263414927 1.249958805 1.248031934 1.228768426 1.228837425 1.242481545 1.231685427 1.24712349 1.246870241 1.231020078 1.209054396 1.226752539 1.228041196 1.268392136 1.241027202 114537963 fccab Fulvimarina pelagi HTCC2506 Sulfur Sulfide Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Fulvimarina;species:Fulvimarina pelagi; 0.848258103 0.869699088 0.863799914 0.948006879 0.813858233 0.855517581 0.888927075 0.9100111 0.852162999 0.884108111 0.829961493 0.896530121 0.877654439 163797967 dmdA alpha proteobacterium BAL199 Sulfur DMSP degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 0.932328362 0.94450787 0.902494735 0.976651799 0.966262778 1.015140962 0.937427673 0.915844049 0.952503198 0.997752674 0.997996881 0.966733085 0.991067172 0.835425641 0.8861291 0.973600186 0.949279205 377532791 amyA Gordonia terrae NBRC 100016 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia terrae; 0.99977553 1.045637942 1.048443754 1.03436867 1.035472798 1.003588271 1.019893399 1.028226218 1.014538508 1.030487367 1.016060223 1.023853717 0.998565923 0.977141012 1.001572898 0.955855472 1.001043347 1.001917923 383781761 amyA Actinoplanes missouriensis 431 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes;species:Actinoplanes missouriensis; 0.91432953 0.899444747 0.93198113 0.902997974 0.855502582 0.885377228 0.851714863 0.844971878 0.942288292 0.857467523 0.881542395 0.885469813 0.848780028 0.914019261 0.890893341 0.875163024 294935419 actin_Perkinsea Perkinsus marinus ATCC 50983 Other Phylogenetic NA superkingdom:Eukaryota;order:Perkinsida;family:Perkinsidae;genus:Perkinsus;species:Perkinsus marinus; 0.93022817 0.887433193 0.856891914 0.880880286 0.960503601 0.85096553 0.851961146 0.890297677 0.889416127 0.890108686 0.81835567 0.807625889 0.807739007 0.839666188 0.898615635 253826067 endochitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 1.020343114 1.06018531 0.988659611 1.020408822 0.961367611 0.999378081 0.943066616 0.969608508 0.999587189 0.993101838 0.965374917 0.969292178 0.951979546 0.98529519 0.910366796 0.99700167 1.025915812 1.023638619 212527670 endochitinase Penicillium marneffei ATCC 18224 Carbon Cycling Carbon degradation Chitin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 1.087927899 1.10975062 1.049088301 1.071060122 1.044790208 1.10504198 1.009306519 1.069828405 1.035235784 1.064718779 1.050704637 1.047801572 1.035921789 1.033178168 1.016778709 1.045098275 1.084324532 1.078929072 326798448 ara Sphingobacterium sp. 21 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Sphingobacterium; 1.177452818 1.148326763 1.205684 1.194111936 1.168873129 1.143148489 1.146598323 1.172886009 1.202212929 1.172405688 1.151941987 1.204184213 1.117619868 1.146211778 1.116743168 1.135609779 1.17335214 1.152874963 145019076 endochitinase Magnaporthe grisea 70-15 Carbon Cycling Carbon degradation Chitin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 0.953593717 0.968657442 0.905804257 0.930936204 0.973509319 0.969289395 0.885623676 0.907302736 0.895573029 0.885861296 0.895517778 0.913016165 0.876992842 0.91156411 0.862874492 0.892344976 0.963498417 0.971938826 300590657 FBPase Rhodobacter capsulatus Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter; 1.106028811 1.089735932 1.071503211 1.108231004 1.0279128 1.091484004 1.077742938 1.109160274 1.107869224 1.079829963 1.000696681 1.086281116 1.0214568 1.03682942 1.012999467 1.056064583 1.086585305 1.105442283 254515804 pgk gamma proteobacterium NOR5-3 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 0.880671521 0.88005118 0.885677964 0.873938382 0.90335914 0.843710429 0.861620973 0.8259841 0.885334853 0.859419405 0.851922038 0.808801605 0.80393614 0.898967847 0.883331332 289780457 aromatic_peroxygenase Agrocybe aegerita Organic Remediation Aromatics Other superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Bolbitiaceae;genus:Agrocybe; 0.802590617 0.833467804 0.793152461 0.812256495 0.823035385 0.83208618 295695777 Sir Bacillus tusciae DSM 2912 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Kyrpidia;species:Kyrpidia tusciae; 1.033423517 1.071585052 1.035749107 1.068011622 1.039018444 1.035634815 0.999850044 1.008472664 1.016541353 1.027718996 1.014645371 1.028652112 1.049371834 1.003653985 0.982830706 1.041213893 1.069612184 1.029863251 344037193 xylj Streptomyces violaceusniger Tu 4113 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces violaceusniger; 1.278312902 1.311633078 1.260361804 1.269515422 1.284850794 1.313489355 1.271398164 1.193825974 1.275176868 1.265220363 1.301903465 1.268855221 1.234498984 1.171994849 1.184783225 1.215494599 1.321079471 1.247234514 223470324 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.927430111 0.936160311 0.881733715 0.891102137 0.885988421 0.915522967 0.860401028 0.863430315 0.839151968 0.857664667 0.827669903 0.849627577 0.852132406 0.861353249 0.826062687 0.85879484 0.894181975 237886075 bphF1 Micromonospora sp. ATCC 39149 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Micromonospora; 0.870195179 0.943164768 0.896039792 0.933415762 0.965747184 0.934320596 0.918221154 0.894836634 0.903217402 0.926160214 0.86922087 0.889817697 0.873556502 0.907411544 0.879611461 0.897553029 0.903437459 0.909776057 352082060 arsc Rhodanobacter sp. 2APBS1 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Rhodanobacter; 0.968164768 0.95757657 0.90425313 0.936819382 0.962168657 0.927182552 0.82678863 1.003126535 0.901218597 0.854629855 0.873610883 0.889355769 0.9306094 0.854546632 0.832082858 0.865624158 0.955178054 0.923575228 161163674 pectinase (pectate_lyase) Sorangium cellulosum 'So ce 56' Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 1.041260443 1.056591908 0.991623098 1.057717913 1.030566529 1.053083182 0.99866794 0.994550468 1.051006151 0.997390045 0.993887323 1.004572374 0.957656673 0.974019478 0.939470439 1.000928171 1.064226124 1.07628037 254446358 CsoS1_CcmK Verrucomicrobiae bacterium DG1235 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales; 1.409368015 1.372539239 1.379438886 1.349726177 1.38243541 1.354274808 1.357461815 1.346046286 1.399050407 1.35437091 1.371869524 1.391683812 1.332528234 1.325969554 1.347633081 1.321956899 1.370523418 1.385540473 93353672 FBPase Cupriavidus metallidurans CH34 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 0.934626542 1.189371845 0.849847133 1.144935956 1.060694676 0.969190418 1.089260082 0.878556951 1.034110981 0.955738452 0.958151447 1.045737197 0.954320222 1.000967881 0.870110125 283781054 ccmL Pirellula staleyi DSM 6068 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Pirellula;species:Pirellula staleyi; 0.996335143 0.967091702 1.002970775 0.981338184 1.045954212 1.016055506 1.008291311 0.939443602 1.019115699 1.08288506 1.074647744 1.00311461 1.008134341 1.009343969 0.970645965 0.982159011 1.006530352 1.035574197 239802863 tktA Variovorax paradoxus S110 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 0.922637942 0.918927942 0.882644961 0.908589596 0.878846726 0.943315224 0.925837943 0.891336175 0.919174712 0.91259229 0.899238418 0.894066521 0.836620351 0.863064123 0.784171247 0.855016639 0.884447209 0.891939341 284034582 amyA Kribbella flavida DSM 17836 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Kribbella;species:Kribbella flavida; 1.182244678 1.174470427 1.178702088 1.17491673 1.146082519 1.154618039 1.118672786 1.139990213 1.13707617 1.168215635 1.169474585 1.15279163 1.128398643 1.106594788 1.064951136 1.123135778 1.14599858 1.145231455 384147770 amyA Amycolatopsis mediterranei S699 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 0.876393478 0.909658413 0.867188156 0.849129582 0.877906139 0.92510424 0.857895636 0.847325302 0.907025134 0.821961116 0.830269814 0.815753168 0.891550422 0.905257522 0.877940725 0.904084934 0.886083229 326412470 pcpe Polymorphum gilvum SL003B-26A1 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;species:Polymorphum gilvum; 0.987171053 0.95156857 0.953341275 0.979903602 0.955148289 0.964481924 0.957071668 0.900318912 0.950804719 0.963981479 0.924162956 0.926999372 0.936996114 0.955613108 0.903630347 0.949978625 0.999383713 0.92833852 77174013 mer Streptococcus agalactiae H36B Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus agalactiae; 0.814138233 0.818515683 88643307 dsrB uncultured prokaryote Sulfur sulfite reduction NA 1.055402332 1.062576553 1.047902548 1.097164995 1.034709411 1.053893451 1.06814339 1.07408782 1.065808448 1.030301635 1.001994551 1.063980308 1.024723977 0.997434341 0.992725027 0.999398867 1.053017562 1.037581678 212171520 alkb uncultured bacterium Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria; 1.040982038 1.0303274 1.013995563 1.050925847 1.041813041 1.06649343 1.049131427 1.02969664 1.044360736 1.023493639 1.027460576 1.066972372 1.024488968 1.041542343 1.013703091 1.073379981 1.04705926 1.047322665 260222673 poba Curvibacter putative symbiont of Hydra magnipapillata Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Curvibacter; 0.817422821 0.913005703 0.848326047 0.883738946 0.861088021 0.845118775 0.876715383 0.872381328 0.853011161 0.874489659 0.8685804 0.861233803 0.865404537 0.852431191 0.863774658 0.841599339 0.856815124 0.884516023 67527312 tannase_Cdeg Aspergillus nidulans FGSC A4 Carbon Cycling Carbon degradation Tannins superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 0.771540781 0.817487566 111073741 endochitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 0.792121528 0.803777032 0.798494555 0.8095853 0.842427504 0.818310617 0.792204411 0.822310059 0.840634245 0.801144085 383789538 amyA Spirochaeta africana DSM 8902 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Spirochaeta;species:Spirochaeta africana; 0.819281307 0.821480237 0.826909182 0.79983605 0.790147143 270289830 B_lactamase_A Pediococcus acidilactici 7_4 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Pediococcus;species:Pediococcus acidilactici; 1.159720949 1.068344314 1.132418139 1.099341759 1.100871995 1.135943537 1.105167108 1.069932829 1.099388097 1.116275516 1.196937274 1.12513474 1.122192657 1.032283632 1.03964347 1.062668048 1.096161894 1.114247004 225570987 codh Clostridium hylemonae DSM 15053 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hylemonae; 1.535454989 1.509716461 1.495781497 1.493621377 1.464576623 1.510105082 1.452868722 1.485126461 1.489883342 1.477968618 1.476782924 1.484437624 1.438226637 1.461261297 1.458250386 1.45987006 1.518632984 1.495975789 182677872 PRI Beijerinckia indica subsp. indica ATCC 9039 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Beijerinckia;species:Beijerinckia indica; 0.956946725 0.910321314 0.896216949 0.999996871 0.886175838 0.894060558 0.911062942 0.969968212 0.960987293 0.899806829 0.887406179 0.960336571 0.849854955 0.865206073 0.846977941 0.842801193 0.941255674 0.8912008 372000035 mer Rhodococcus sp. Mel Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 0.987165121 0.962751205 0.970638586 0.983272821 0.936578173 0.986430368 0.945148993 0.973517994 0.98790974 0.9670706 0.938775498 0.962866658 0.963987988 0.938751653 0.893635777 0.963604804 0.979834335 0.992276011 112463111 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.96074596 1.013893392 0.902161868 0.96504788 0.944917104 0.999547998 0.931403027 0.96408326 0.940260262 0.946345184 0.873854348 0.952998028 0.93197427 0.911722792 0.884894776 0.93177051 0.967501294 1.000183413 323528153 xylg Burkholderia sp. CCGE1001 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 1.200238438 1.19220084 1.191029143 1.200983229 1.192635968 1.221525556 1.181498596 1.187695427 1.17676358 1.176209922 1.191004523 1.189045445 1.182826611 1.161170888 1.163319155 1.178589103 1.203728096 1.18632082 327183198 amyA Lactobacillus amylovorus GRL1118 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus amylovorus; 1.013364729 1.004565981 0.957642467 1.017204155 0.954068284 1.026017064 0.939929904 0.970274537 0.994265461 0.982497728 0.949973395 0.993514266 0.946739442 0.951551171 0.912165323 0.943449392 0.99595579 0.99305794 383330597 bphd Mycobacterium xenopi RIVM700367 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium xenopi; 0.912015716 0.932907171 0.937649831 0.932999086 0.950047511 0.911979806 0.947382433 0.91855395 0.936276521 0.921211408 0.901613051 0.925569714 0.944411989 0.859905159 0.897075715 0.821872796 0.892079348 262184445 amyA Corynebacterium aurimucosum ATCC 700975 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium aurimucosum; 0.805285467 0.862755804 0.917223792 0.840032847 0.87744123 0.857672124 6689528 metc Xanthomonas campestris Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas; 0.918789925 1.024041873 0.902961326 0.927145327 0.937734459 0.963183013 0.917360829 0.91800784 0.929165221 0.963950155 0.928510129 0.921733812 0.920919403 0.947407623 0.942936771 0.929453827 0.976704046 0.99390315 45386139 narg unidentified bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.932988895 0.962421382 0.938880363 0.947642113 0.960777729 0.932757081 0.861790249 0.888329479 0.919029802 0.933586857 0.914946634 0.883425066 0.932715013 0.865072052 0.877474978 0.913058676 0.955164507 0.931587201 3560021 exoglucanase Streptomyces coelicolor A3(2) Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 0.943329245 0.962286674 0.929344058 0.952541143 0.881612937 0.917534554 0.888200655 0.915345067 0.924469222 0.882613784 0.877732196 0.905130307 0.895733431 0.908866195 0.847603879 0.881040062 0.92483691 0.921536521 150036050 soxY Spirochaeta sp. M-6 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetes;order:Spirochaetales;family:Spirochaetaceae;genus:Spirochaeta; 0.775563248 0.809332456 260218298 cysI Cronobacter turicensis z3032 Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Cronobacter;species:Cronobacter turicensis; 1.314112895 1.268142063 1.283636536 1.287182304 1.245109948 1.27598853 1.254357848 1.281991662 1.273876664 1.238679197 1.261606645 1.287981289 1.221065377 1.226680369 1.200819086 1.255897425 1.276235084 1.265824025 385867138 alkb uncultured bacterium Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria; 0.780713221 0.872567566 0.825358263 0.863523527 0.814106931 0.827708023 0.806086658 0.830872701 0.819710256 0.840846871 0.849871332 289207733 PRI Thioalkalivibrio sp. K90mix Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio; 1.001870127 0.942327057 0.985910471 0.914857303 0.920126044 0.920264996 0.803951199 0.903002588 0.880935451 0.84058938 0.802165573 0.893386729 0.932544011 0.838923396 0.845397864 0.895232142 0.9658905 0.932247833 297624316 xyla Truepera radiovictrix DSM 17093 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Trueperaceae;genus:Truepera;species:Truepera radiovictrix; 0.884396705 0.827357347 0.846959058 0.893483076 0.873679051 0.825335555 0.874907869 0.887513176 0.908210084 0.847738892 0.872623682 0.900454756 0.841174733 0.866416627 0.900128737 365418364 tktA Bradyrhizobium sp. STM 3843 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.849695605 0.78692612 0.807692085 0.834065652 0.829339808 0.835704314 0.86777412 0.807122789 0.820618468 0.825344452 0.816591633 0.838944964 0.831454675 220691861 rgl Aspergillus flavus NRRL3357 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus flavus; 1.222542242 1.215641508 1.18814111 1.195466697 1.18256513 1.217669346 1.212313256 1.179631229 1.177581246 1.213592736 1.194814546 1.202119266 1.169675327 1.196767265 1.1710053 1.200183823 1.175040153 1.205031799 45386243 narg unidentified bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.044994509 1.041625582 1.040828642 1.03034658 0.960433222 1.032047774 1.016970062 1.020338425 1.035931491 1.060337929 0.992737328 1.079051052 0.994753975 1.004286757 0.985228411 1.019899223 1.066600033 1.071732969 145593359 amyA Salinispora tropica CNB-440 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora tropica; 1.014067396 1.032651093 0.948996573 0.975736749 0.956572688 0.99977183 0.9489339 0.941624401 0.987626077 0.947684947 0.924946119 0.967128683 0.928785105 0.942838487 0.90363002 0.960924706 0.981932309 1.038662915 88926806 nifh Halorhodospira halophila SL1 Nitrogen Nitrogen fixation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Halorhodospira;species:Halorhodospira halophila; 0.943386201 0.926082256 0.880003626 0.983112039 0.874354124 0.946117202 0.912780357 0.918897603 0.936483183 0.917277934 0.868909709 0.905800475 0.87002863 0.934583973 0.814264344 0.885749741 0.93722474 0.959228229 161785006 acetylglucosaminidase Gluconacetobacter diazotrophicus PAl 5 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter diazotrophicus; 1.064294192 1.038070024 1.041524694 1.02372521 0.951637194 1.020376224 0.938987352 0.970134434 1.034163252 1.008323556 1.001769403 0.96582432 0.996245447 0.968991346 0.933079412 0.995884067 1.034795446 1.02462141 337761747 FBPase Hyphomicrobium sp. MC1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium; 0.898742803 0.808836825 0.895748996 0.935870595 0.902262446 0.905495426 0.902724159 0.910288836 0.906610668 0.896960837 0.851253757 0.945787373 0.837732158 0.862913843 0.819755753 0.839019104 0.913012187 0.860130372 291561229 cda butyrate-producing bacterium SS3/4 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales; 0.91571959 0.882892031 0.874937698 0.904514079 0.860081598 0.853630967 0.821265133 0.824709408 0.913731552 0.885573443 0.885871047 0.893528077 0.852810311 0.885913958 0.856199602 0.875934996 0.894604344 149939152 dsrB uncultured bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.917708011 0.920639775 0.895023227 0.955045427 0.891198504 0.963991908 0.930166682 0.997637491 0.950530712 0.902152031 0.875971821 0.930108323 0.929549932 0.90510442 0.854245775 0.84740757 0.929759371 0.954831601 119535317 limeh Nocardioides sp. JS614 Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 0.887955593 0.870377018 0.860851057 0.891199907 0.90196105 0.948584177 0.898191145 0.825519425 0.91677737 0.890494155 0.890928289 0.903818995 0.814763196 0.870369045 0.876503543 0.869818555 0.898468913 255707096 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.971299305 1.019250024 0.948055632 0.973580455 0.950330282 0.992980939 0.886810689 0.995213438 0.970207282 0.940219106 0.909456052 0.938906874 0.924824345 0.938609777 0.863496473 0.9112274 0.974109313 0.979408445 319413907 phenol_oxidase uncultured bacterium Carbon Cycling Carbon degradation Lignin superkingdom:Bacteria; 1.045502989 1.028808348 0.984361512 1.031033845 1.040473991 1.023258279 0.999884188 1.01398704 1.036616787 1.006609108 1.009951647 1.025106427 1.036319179 0.952960162 0.949827209 0.983885183 1.036522419 1.034184219 395237920 chnb Turicella otitidis ATCC 51513 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;genus:Turicella;species:Turicella otitidis; 1.040113835 0.99574902 0.978804823 1.036404427 0.971101988 0.973183189 0.933959971 1.081116018 1.030230885 0.962454023 0.994046139 0.981924389 0.939412056 0.951643279 0.944464058 0.974531179 1.028523753 0.990374235 326332447 amyA Nocardioidaceae bacterium Broad-1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae; 1.018005514 1.022897401 0.932973865 0.994177322 0.940390941 1.010394325 0.96999166 0.973790507 0.97357281 1.047257195 1.02301571 0.991608182 0.913683767 0.986623766 0.894170763 0.917206729 0.990393827 1.038230831 157915237 amyA Salinispora arenicola CNS-205 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora arenicola; 0.859828143 0.856578073 0.812310766 0.841292037 0.856234059 0.847901067 0.822790292 0.950574635 0.847550292 220936396 PRK Thioalkalivibrio sulfidophilus HL-EbGr7 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio;species:Thioalkalivibrio sulfidophilus; 0.83179606 0.878618761 0.822633953 0.831109907 0.818737655 0.822731715 0.889225051 0.816778721 0.799775004 0.839233589 0.84726429 187727841 mer Ralstonia pickettii 12J Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 1.132735397 1.107486032 1.072629532 1.090652437 1.069579514 1.06655869 1.050454429 1.062526444 1.055070844 1.03040394 1.09139538 1.071624713 1.052386216 1.014607767 1.018131625 1.042631513 1.08949914 1.060926608 4827073 hcab Rhodococcus sp. NCIMB12038 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 0.814952402 0.786419332 0.80827143 0.81046377 21623660 nirk Hyphomicrobium denitrificans Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium; 0.863042913 0.872022282 0.934742103 0.870777286 0.861301792 0.837929302 0.881749748 0.881692816 0.891937402 0.845816268 0.833022564 0.871129977 0.809880378 0.845931723 0.898028315 0.858506158 108771092 tfda Mycobacterium sp. MCS Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 0.867891906 0.806901278 0.950852007 0.915241154 0.92193765 0.9159988 0.896009243 0.925344381 0.89403982 0.841232681 0.948841643 0.852974937 0.860866046 0.881801374 0.833290256 0.892769388 0.867431992 0.893666388 386923289 pcpe Escherichia blattae DSM 4481 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Shimwellia;species:Shimwellia blattae; 0.938570009 0.930753263 0.971580368 1.024163907 0.979065756 1.002661858 1.020546856 1.031272787 1.008042852 1.026076308 1.013644123 1.015839608 0.998016634 0.932452996 0.954511557 0.996847948 1.056446407 1.004590138 88175199 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.890883028 0.890597035 0.876087723 0.843149264 0.797043218 0.868225374 0.862580085 0.889604216 0.885322903 0.828827972 0.808176179 0.863066147 0.837417631 0.836858649 0.838424388 0.825519772 389866606 ppx Modestobacter marinus Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Geodermatophilaceae;genus:Modestobacter; 1.083156315 1.07870464 1.07120606 1.08765559 1.07066822 1.105665571 1.073864942 1.077921697 1.065591536 1.063243284 1.06534499 1.055852061 1.061886299 1.042085499 1.033619485 1.044391956 1.080795402 1.070782295 255106777 dmdA Thalassiobium sp. R2A62 Sulfur DMSP degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Thalassobium; 1.023764033 1.014896485 0.989875223 1.045814215 1.007811906 1.014642177 1.011088495 1.007451924 1.026621631 1.003008987 1.015255664 1.03802253 0.958389938 0.965257279 0.958590097 0.996075495 1.026819524 1.010114883 87280994 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.942234606 0.911749188 0.904698294 0.985192923 0.875707818 0.91629352 0.892300725 0.917911105 0.907872444 0.901047126 0.877825847 0.904135221 0.884562143 0.906972553 0.8908014 0.918228375 0.958716757 0.929021933 365884791 tktA Bradyrhizobium sp. ORS 375 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 1.204317936 1.181132027 1.123816442 1.180856681 1.106670137 1.156316016 1.116360037 1.142078372 1.141577706 1.128917445 1.142879339 1.149433161 1.121220959 1.120385701 1.091403361 1.1211179 1.173998544 1.131805587 109456299 GAPDH_Calvin Roseobacter denitrificans OCh 114 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter denitrificans; 0.817479625 0.899905058 0.828012979 0.836079018 0.849263783 0.879744149 0.843581417 0.899274594 0.892746181 0.857257078 0.86963579 0.857332557 0.844713999 0.922387968 0.847117129 374576254 tktA Bradyrhizobium sp. WSM471 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 1.113567037 1.100797936 1.108555109 1.120312555 1.069025237 1.094214873 1.047681337 1.079268114 1.128611477 1.05977799 1.093716382 1.084574111 1.057387927 1.04839751 1.044624101 1.077390488 1.126444749 1.08087505 312443536 ppx Paludibacter propionicigenes WB4 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Paludibacter;species:Paludibacter propionicigenes; 0.78780489 0.803783138 118174130 cutinase Mycobacterium smegmatis str. MC2 155 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 1.492702974 1.491601824 1.474460268 1.471630024 1.477407879 1.505351122 1.478604196 1.483196894 1.475169731 1.460392837 1.482572648 1.478954602 1.479844909 1.441852795 1.463275825 1.461463237 1.466241191 1.438649359 329897919 tktA gamma proteobacterium IMCC3088 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 0.990106641 0.956298003 0.968828337 1.035027138 0.980140318 0.948795511 1.005533399 0.995992618 0.993200438 0.976400178 1.012377835 1.022981593 0.966295396 0.952316919 0.987359876 0.962126045 0.955318116 0.927008605 347761298 PRI Gluconacetobacter xylinus NBRC 3288 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter xylinus; 0.875681209 0.878498598 0.895572043 0.872619421 0.837562483 0.904790574 0.951125771 0.894005919 0.843673505 0.844464247 0.844713964 0.882307451 342316482 aoxb uncultured bacterium Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 0.995370379 0.926026426 0.942891977 0.995713335 0.926016979 0.928411281 0.983736697 0.930113956 0.968533345 0.981180189 0.932326326 0.956480806 0.919320561 0.932630822 0.898478289 0.920915685 0.939711288 0.924108417 334344633 camdcab Sphingobium chlorophenolicum L-1 Carbon Cycling Carbon degradation Camphor superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium;species:Sphingobium chlorophenolicum; 1.130503859 1.108136093 1.112731666 1.110773612 1.089214056 1.107938222 1.091700568 1.100255083 1.082702701 1.095634328 1.090077443 1.086965204 1.077452573 1.032894158 1.019947573 1.045446406 1.114361763 1.106229378 310758154 pectinase (pectate_lyase) Achromobacter xylosoxidans A8 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter;species:Achromobacter xylosoxidans; 0.870956167 0.820157853 0.787780068 0.853773788 0.818395692 0.8346744 0.818263134 0.772560785 0.831643994 0.824869512 0.808919359 0.784962748 0.864280575 0.870436722 219664365 one_ring_23diox Rhodococcus sp. TFB Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 0.825470864 0.881233186 0.857751719 0.819678392 0.832447591 0.829883826 0.808882739 0.833058272 0.86319688 0.855934738 0.846258351 29828701 amyA Streptomyces avermitilis MA-4680 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 0.87453065 0.911496492 0.887035766 0.931718392 0.842936738 0.85774042 0.857685172 0.851035454 0.908921174 0.868368415 0.822208101 0.862620471 0.765706306 0.88070295 0.831497873 0.80345151 0.859677671 0.863711251 302534534 acetylglucosaminidase Streptomyces sp. C Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 0.943886571 0.925340914 0.906525033 0.936552857 0.876525309 0.906707027 0.920208915 0.900008444 0.936905525 0.923724604 0.876221974 0.902991519 0.876515518 0.887399185 0.889897939 0.895958864 0.95685286 0.920338945 333443030 PRI Methyloversatilis universalis FAM5 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Methyloversatilis;species:Methyloversatilis universalis; 0.950279961 0.953911322 0.945257191 0.993403914 0.998501919 0.974632869 0.992695815 1.015487284 0.984103469 0.943553247 0.981563205 0.989545807 0.96427787 0.936051181 0.870570199 0.939423488 0.9789885 0.931994176 66801891 narg unidentified bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.816492978 0.833558955 0.815130294 0.838646791 270511764 amyA Streptosporangium roseum DSM 43021 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 1.209834858 1.252216784 1.202708455 1.178621598 1.200587544 1.233613068 1.173553098 1.16236521 1.176995199 1.204431711 1.205179761 1.181618078 1.171840643 1.193061843 1.164134868 1.183898141 1.207089096 1.223551994 146406868 tktA Bradyrhizobium sp. BTAi1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 1.223891971 1.306893818 1.199524479 1.215098526 1.176744775 1.21743546 1.157274083 1.182664659 1.191455757 1.191980497 1.190193151 1.212821376 1.17171227 1.169888512 1.143657939 1.194866915 1.2178399 1.207087154 383789545 amyA Spirochaeta africana DSM 8902 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Spirochaeta;species:Spirochaeta africana; 1.375264807 1.348301169 1.336121193 1.3387538 1.328023872 1.362928415 1.303144432 1.339575624 1.325372391 1.318452058 1.32331877 1.326017377 1.321316552 1.314737375 1.31446143 1.31964086 1.349142815 1.335452895 374610029 merb Mycobacterium tusciae JS617 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tusciae; 1.072739076 1.062253787 1.072422721 1.024545403 1.016414288 1.096600582 1.01377685 1.023009075 1.046703547 1.048382144 1.057078865 1.040400994 1.059629462 1.041259999 0.970241301 1.052233914 1.054765931 1.072772812 377560582 badh Gordonia otitidis NBRC 100426 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia otitidis; 0.770231088 0.804738107 0.809087653 0.796095163 0.799620251 0.797662946 0.848815131 0.820387304 0.838569321 69938258 nosz Paracoccus denitrificans PD1222 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 0.992434189 1.026730239 0.977836328 0.983619204 0.97384051 1.01093314 0.945226109 0.984562923 0.964367877 0.96328169 0.950204727 0.982609673 0.965655032 0.949718172 0.955239158 0.971793913 1.003442581 1.016481488 302472977 pcpe Streptomyces viridochromogenes DSM 40736 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces viridochromogenes; 1.018878711 1.055650024 0.975099332 0.997706587 0.977722497 1.011755164 0.984115639 1.002246383 0.939462608 1.020269986 0.995758247 0.989694631 0.948985256 0.973342661 0.919818064 0.914515902 0.996741768 0.986482219 409427374 nitro Pseudomonas sp. HYS Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 1.056953304 1.057429355 1.023836518 1.043795753 1.002314513 1.027246465 1.013015261 1.013933674 1.063380679 1.016516817 0.989551909 0.992123437 0.930947368 0.91618784 0.864772319 0.97720864 0.996780455 1.004794691 46307842 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.813042061 0.824468524 0.8169051 0.815244499 111615152 poba Verminephrobacter eiseniae EF01-2 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 0.811794 0.807144925 0.792167211 0.877476537 39982726 terc Geobacter sulfurreducens PCA Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter sulfurreducens; 0.971673496 0.903451723 0.961560008 1.032763644 0.958660735 0.980707319 1.007758431 1.008610737 0.980631744 0.979420202 0.989589516 0.991232275 0.965082374 0.954020732 0.984652118 0.97819102 1.007089235 0.936929886 315609063 amyA Prevotella buccae ATCC 33574 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella buccae; 1.091174465 1.213527908 1.071450318 0.958148257 1.028549967 0.993208216 0.998466058 0.966728115 0.966808208 1.020452451 0.997956716 1.028622682 0.970303096 0.989030567 0.945793933 0.989550868 0.917908141 1.00024301 84498490 arsc Janibacter sp. HTCC2649 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Janibacter; 0.981139411 0.968960498 0.92531315 0.979515524 0.941374961 0.97971089 0.937519867 0.907093926 0.962550058 0.936053557 0.90522868 0.928553762 0.93778225 0.900496461 0.902166973 0.927544824 1.004052161 0.958274922 349687934 catb Gluconacetobacter oboediens 174Bp2 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter oboediens; 0.755862514 0.801728267 300772074 xylanase Sphingobacterium spiritivorum ATCC 33861 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Sphingobacterium;species:Sphingobacterium spiritivorum; 0.833745778 0.851373744 0.811514753 0.830623153 0.881318629 0.82718642 0.813931162 0.83119739 0.831352949 0.893961455 29125954 nosz uncultured soil bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.779895484 0.857391196 0.792836816 0.794322414 0.828986955 60326762 nifh uncultured nitrogen-fixing bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 1.170687517 1.138808673 1.162519549 1.184184193 1.165219595 1.156672891 1.159301658 1.182991277 1.170979306 1.135386493 1.147546041 1.179106148 1.170850652 1.088136039 1.153057368 1.150627474 1.169175627 1.133476306 74056902 nosz Thiobacillus denitrificans ATCC 25259 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus;species:Thiobacillus denitrificans; 1.050150236 1.079735828 1.004876779 1.017615063 1.04506027 1.053455797 1.031587442 1.000341477 1.012406403 1.019570715 1.000493681 1.008555846 0.995742832 1.015488344 0.939347677 1.020006675 1.090003012 1.07641839 145223959 cutinase Mycobacterium gilvum PYR-GCK Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 0.984172421 0.944888679 0.974537754 0.971124445 0.983151045 0.980050806 0.964942203 0.971870314 0.983818397 1.015380394 0.992744585 0.972794706 0.911054569 0.927231075 0.905878373 0.932426303 0.989204945 0.964673844 73535242 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.81379599 0.793593095 0.790583959 0.822703702 0.794335045 0.800749562 0.804441126 0.833401087 0.817835271 295096540 pme Enterobacter cloacae subsp. cloacae NCTC 9394 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter cloacae; 0.938142755 0.902943353 0.914381892 0.906074193 0.882691352 0.967864485 0.863535131 0.899211081 0.867197883 0.935493261 0.874718956 0.891070927 0.906023134 0.915323038 0.916186234 0.93206613 0.964548809 0.950770376 375301669 dsra Acetobacterium woodii DSM 1030 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Eubacteriaceae;genus:Acetobacterium;species:Acetobacterium woodii; 1.007653819 0.999175461 1.020656383 1.038762752 1.039257879 1.01202716 1.028336236 1.031332424 1.095557783 1.029572216 1.024427488 1.021838261 0.994847104 0.971394272 0.984891267 0.978325579 1.00163125 0.973395488 305383630 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 1.064986025 1.016680006 1.033537205 1.037828542 0.972412328 1.022026223 1.011814466 1.027894097 1.033779709 1.002250539 0.998615301 1.058392035 0.972452193 0.985165906 0.966648063 0.995966283 1.03818678 1.041041409 302882620 cutinase Nectria haematococca mpVI 77-13-4 Carbon Cycling Carbon degradation Cutin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Nectria;species:Nectria haematococca; 1.160223911 1.154417207 1.179902437 1.176356473 1.191149275 1.178909892 1.167354205 1.13170338 1.175653176 1.214026219 1.142147355 1.169001612 1.148900136 1.174561285 1.184113422 1.142889809 1.161715501 1.158854246 328950946 amyA Marinithermus hydrothermalis DSM 14884 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Marinithermus;species:Marinithermus hydrothermalis; 1.267820363 1.191767196 1.202937438 1.259442108 1.212284191 1.210504752 1.200085779 1.244958422 1.230771493 1.192877116 1.188574997 1.2457084 1.192502436 1.185289297 1.206745005 1.213154356 1.208996292 1.220942354 145299277 nrfa Aeromonas salmonicida subsp. salmonicida A449 Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas salmonicida; 0.968544482 0.865499981 0.841177725 0.92189491 0.84117679 0.873217581 0.969533526 0.854191847 0.893887383 158524010 dsra uncultured bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.09541283 1.024109582 0.948197566 0.98645672 1.130406149 1.037495171 0.947425598 0.922414801 0.958962529 0.971134059 0.927057375 0.966005059 0.973301544 0.943658718 0.906732287 1.063631944 1.116804301 1.011277517 222543226 phytase uncultured bacterium Phosphorus Phytic acid hydrolysis NA superkingdom:Bacteria; 0.92480707 0.883459729 0.898702492 0.927292658 0.904476419 0.88179415 0.918923776 0.922524909 0.883457587 0.873673587 0.914538757 0.898737159 0.904197054 0.846634224 0.843750762 0.835282995 0.889588318 0.868596212 82940315 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.872766439 0.914059369 0.827085752 0.867151611 0.823911967 0.879864402 0.833547701 0.921383384 0.873734517 0.885616415 0.850958543 0.853126695 0.846403795 0.895328544 0.826088823 0.833030322 0.884916431 0.94372054 111026276 one_ring_23diox Rhodococcus jostii RHA1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 0.83228761 0.902089568 0.836522867 0.882212758 0.877777386 0.87398872 0.848924506 0.814273843 0.827252186 0.893753455 0.834757606 0.934099945 0.91704277 118424304 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.810822515 0.876931491 0.817183146 0.826756729 0.886487682 0.828292397 0.823131156 0.785134988 0.855417114 0.824925628 0.828909808 0.879684021 578092 phenol_oxidase Phlebia radiata Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Corticiales;family:Corticiaceae;genus:Phlebia; 0.906429735 0.880672777 0.877088455 0.923343064 0.8324925 0.846275673 0.83216812 0.870039929 0.842172335 0.814602377 0.833033481 0.875814255 0.841008157 0.907578188 0.87295803 62392084 bphc uncultured bacterium Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria; 0.838758278 0.808309997 0.849578064 0.908261377 0.894383735 0.820092625 0.930917321 0.911866027 0.869991296 0.855637992 0.852143758 0.876476497 0.819307863 0.8101111 0.832954774 0.812779693 345876450 sucD endosymbiont of Riftia pachyptila (vent Ph05) Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;species:endosymbiont of Riftia pachyptila; 0.906068338 0.918339341 0.876888348 0.932433586 0.850590686 0.907673864 0.911287878 0.86957492 0.881618308 0.874467721 0.866892825 0.812997763 0.875022287 0.837578615 0.839849171 0.948889793 0.944348588 153813005 ppk Ruminococcus obeum ATCC 29174 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Blautia;species:[Ruminococcus] obeum; 0.931718191 0.834608184 0.816087604 0.862064518 0.910738986 0.99715611 0.837678708 0.928939923 0.893544247 0.81103582 0.805318212 0.868173045 0.859761208 0.833011235 332592289 fthfs uncultured bacterium Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria; 0.786059286 0.867498462 0.771825771 0.807310175 0.792278432 0.819798579 156235125 MCM Roseiflexus castenholzii DSM 13941 Carbon Cycling Carbon fixation 3-hydroxypropionate bicycle superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus;species:Roseiflexus castenholzii; 0.932573722 0.916129202 0.919634164 0.955146702 0.919785976 0.922795586 0.958556249 0.944539986 0.956117584 0.918082036 0.976508498 0.956879577 0.875071024 0.93288337 0.931702817 0.893107026 0.954502846 0.946540218 238700160 cysJ Yersinia kristensenii ATCC 33638 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia kristensenii; 1.029534551 1.02938094 1.026879235 1.053973543 1.081141144 1.035842414 1.01639034 1.054465315 1.063341115 1.018372148 1.086959576 1.080254174 1.022043077 1.01330595 0.979498914 1.008236067 1.018655229 1.042668154 119535732 mult_ring_12DiOx Nocardioides sp. JS614 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 1.036269866 1.10241516 0.973012533 1.008786688 1.099162997 1.082314185 1.013244425 0.973146019 1.016806265 1.05595149 1.100499876 1.039880027 1.011468875 1.015782516 1.015520697 1.010641026 0.985972751 1.057690048 334141052 one_ring_23diox Novosphingobium sp. PP1Y Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 0.954286661 0.873812293 0.920845744 0.861002463 0.893344212 0.931874389 0.878767814 0.893909041 0.891713112 0.882081854 0.899080567 0.840852608 0.842188226 0.841664745 0.838024808 0.81598834 0.852189003 0.878569085 330502255 GAPDH_Calvin Pseudomonas mendocina NK-01 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas mendocina; 0.997236564 0.960336335 0.928358091 0.936637892 0.83571302 0.945118997 0.847358947 0.943560742 0.940943976 0.939851606 0.94413553 0.939850898 0.877381494 0.947434795 0.859128491 0.930302726 0.965302662 0.951257334 257171269 chitinase Halomicrobium mukohataei DSM 12286 Carbon Cycling Carbon degradation Chitin superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halomicrobium;species:Halomicrobium mukohataei; 0.967280291 0.955249023 0.96647978 0.923294191 0.952980984 0.968418982 0.931528733 0.911665169 0.929839243 0.968093432 1.107469546 0.958338226 0.945737039 0.951953905 0.94816673 0.905258214 0.938619952 0.989859875 389878289 cmci Tistrella mobilis KA081020-065 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Tistrella;species:Tistrella mobilis; 1.026110862 1.002673101 1.023688041 1.035067393 0.99685343 1.022479892 0.962362377 1.014321673 1.046533432 1.032091257 1.003550252 1.014151503 0.961957605 0.972328435 0.971535882 0.968833986 0.994829425 1.016986556 229489436 cysJ Rhodococcus erythropolis SK121 Sulfur Reduction NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 1.185883696 1.20441874 1.204969149 1.186979691 1.203326163 1.237242018 1.177565494 1.16739874 1.202293743 1.174670875 1.151417141 1.178772926 1.169845099 1.158913993 1.15780637 1.147076469 1.201176899 1.207721396 374990867 pectinase (pectate_lyase) Streptomyces bingchenggensis BCW-1 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces bingchenggensis; 0.920315392 0.968062426 0.938317162 0.902302779 0.860175481 0.93016501 0.884672013 0.886542296 0.882752422 0.946557662 0.921637006 0.918721713 0.891299872 0.886571097 0.856937172 0.919019475 0.876151708 0.92917641 393172383 amyA Rhizobium leguminosarum bv. trifolii WSM2012 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 0.880896601 0.784592122 0.7965228 0.854763132 0.926261748 0.801864465 0.881129295 0.850397474 0.889661322 0.80833491 0.915780487 0.859504052 1890342 one_ring_23diox Cupriavidus necator Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus; 0.982035477 0.990252946 1.049432392 0.969361494 0.940044644 0.980213666 0.935395921 0.941493966 0.953732166 1.022727284 0.922715874 0.957453667 0.924973322 0.903125301 0.860753169 0.907258638 0.970519153 0.986100218 159793518 pcpe Pseudomonas sp. PDS-7 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.803454319 0.819359731 0.789055437 0.819258009 221208445 catechol Burkholderia multivorans CGD2 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 0.987370218 1.042865923 0.991103486 0.996350914 0.965430167 1.000501044 0.966351379 0.980294288 0.969444834 0.970073777 1.005389031 1.003228689 0.982239913 0.96653538 1.021741958 0.991767593 1.027266878 1.021666231 53759053 nitrate_reductase Colletotrichum sublineolum Nitrogen N Assimilation NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Glomerellaceae;genus:Colletotrichum; 0.99015833 0.982572081 0.968520984 0.974321784 1.010100958 0.994625467 0.973699144 0.971301167 1.050749136 0.986999406 0.961144122 0.968660396 0.938374136 0.958675931 0.906605024 0.94727974 0.962332673 0.986236349 112462885 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.931817038 0.927141852 0.926830328 0.964162101 0.858501641 0.915685032 0.882647364 0.90243501 0.975158053 0.917716269 0.876598804 0.875063609 0.858567042 0.881501921 0.855629094 0.889786875 0.925942266 0.940122441 39972751 RgaE Magnaporthe oryzae 70-15 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 0.758552465 0.788040034 0.792704242 0.819503683 291005410 xylc Saccharopolyspora erythraea NRRL 2338 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 1.340214473 1.330949639 1.294003609 1.302957074 1.29555016 1.338978117 1.300937763 1.296483961 1.277254219 1.274198261 1.293779377 1.291882016 1.283756245 1.276752609 1.303004657 1.306435095 1.318322477 1.290505557 383791438 amyA Spirochaeta africana DSM 8902 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Spirochaeta;species:Spirochaeta africana; 0.834374875 0.838557761 0.830752004 0.907820184 0.871517598 0.827616621 0.876579065 0.861568319 0.850709649 0.827298738 0.866459059 0.838270533 0.799448866 99030507 ppk uncultured bacterium Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria; 1.268508688 1.229717768 1.183890793 1.227951782 1.188610812 1.24032775 1.199572928 1.220979468 1.185397724 1.192147046 1.189910896 1.196899499 1.174357987 1.154102464 1.194104185 1.193839786 1.222067139 1.17620023 33596686 ppx Bordetella parapertussis 12822 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella parapertussis; 0.878046883 0.882006472 0.9263384 0.968990196 0.910691335 0.896232475 0.918838198 0.906700412 0.859052833 0.883633173 0.897096271 0.893432188 0.877656243 0.824504078 145217504 cutinase Mycobacterium gilvum PYR-GCK Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 1.157938299 1.151844933 1.116345122 1.162969558 1.126803844 1.158074062 1.095244336 1.120598169 1.143729811 1.070561857 1.061522231 1.09168242 1.083731309 1.081537151 1.054051334 1.075769184 1.1774617 1.1530551 111070407 pme_Cdeg Phaeosphaeria nodorum SN15 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Phaeosphaeriaceae;genus:Parastagonospora;species:Parastagonospora nodorum; 0.934490589 0.932715438 0.913364821 0.962038766 0.959826824 0.903767782 0.918444646 0.92370588 0.944818836 0.89284401 0.863688488 0.899839426 0.826573524 0.828321817 0.835174594 0.828712945 0.960436322 0.926649042 336096613 cysJ Oligotropha carboxidovorans OM4 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Oligotropha;species:Oligotropha carboxidovorans; 1.2974404 1.286956657 1.275176221 1.312623968 1.284420584 1.290231147 1.240996548 1.245825558 1.272973365 1.266830627 1.263525919 1.264885682 1.286805536 1.26085722 1.24737183 1.257843453 1.287164093 1.258038369 159173130 chitinase Vibrio sp. AND4 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 0.849104791 0.879638065 0.798200843 0.842043057 0.784614253 0.827681509 0.820344689 340528562 endoglucanase Amycolatopsis mediterranei S699 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 0.803231232 0.79427987 0.837304345 0.797296849 0.853273873 0.832542945 0.777530849 0.801958932 0.824429858 220719997 one_ring_23diox Variovorax paradoxus S110 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 1.07676302 1.173770334 1.031511734 1.048178244 1.053974329 1.058097404 1.009637124 1.08448318 1.00494664 1.028659858 1.000803425 1.089558836 1.022809889 0.995398383 0.99073894 1.009045004 1.075604851 1.052008083 365329556 phn Bradyrhizobium sp. STM 3809 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.896604952 0.887085394 0.884377795 0.940565707 0.834207693 0.882216973 0.879951685 0.937498863 0.92760305 0.887628465 0.893580273 0.927626196 0.820604708 0.872620274 0.900792091 0.888612414 0.914608496 0.908389141 226356151 cda Deinococcus deserti VCD115 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus deserti; 0.751274301 0.827123778 0.796663935 0.85920728 0.818088479 0.834625893 0.913490681 340359104 nrfa Actinomyces sp. oral taxon 448 str. F0400 Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 448; 0.814312404 0.845964068 0.879690523 0.821456801 0.817780939 0.806344748 0.812986387 0.851157351 4883502 exoglucanase Humicola grisea var. thermoidea Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;genus:Humicola;species:Humicola grisea; 1.175825904 1.169585357 1.144024844 1.13363967 1.137046003 1.181657976 1.140868925 1.142356514 1.131705031 1.133153172 1.131205331 1.141917624 1.139524389 1.101726769 1.116209771 1.083901105 1.151552313 1.142377585 343784642 narb Haloarcula hispanica ATCC 33960 Nitrogen Assimilatory N reduction NA superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloarcula;species:Haloarcula hispanica; 1.014813597 0.993191322 0.992821727 1.044758371 0.970157712 1.009343592 0.997555982 1.017336275 1.014846952 1.008864031 0.980276503 1.015877243 0.954838999 0.956170796 0.981076576 0.974614915 1.013094984 0.994618879 313886266 amyA Porphyromonas asaccharolytica PR426713P-I Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Porphyromonas;species:Porphyromonas asaccharolytica; 0.873848751 0.912388033 0.904452379 0.914566001 0.906764979 0.904982108 0.927808786 0.914446729 0.89450663 0.905615316 0.94109347 0.929622897 0.921873826 0.851507295 0.920973429 0.920971429 0.886562372 386851775 amyA Actinoplanes sp. SE50/110 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes; 0.83066319 0.850574827 0.814802185 0.819604574 0.864676197 0.819318931 0.821931244 0.841608302 0.856543749 0.852931166 0.806784798 0.789152903 0.837042248 0.815608852 0.807452273 0.841327918 0.856552699 374847000 badh Nocardia cyriacigeorgica GUH-2 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia cyriacigeorgica; 1.359118285 1.332861025 1.324049808 1.312534849 1.30026198 1.356585128 1.301358953 1.311253551 1.327924898 1.333105751 1.309864436 1.311664768 1.300834211 1.277862004 1.267941791 1.299230755 1.353156052 1.336905879 296426331 phenol_oxidase uncultured bacterium Carbon Cycling Carbon degradation Lignin superkingdom:Bacteria; 1.020511931 1.021211994 0.998011237 1.029050569 1.019495222 1.048214441 1.020690255 1.004571147 1.015805198 1.04477317 1.100156232 1.00610087 0.991682644 1.041760104 0.905853823 1.00063001 1.010379261 1.046088826 66801973 narg unidentified bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.973587779 0.924639452 0.993397603 0.965962904 0.993741801 0.953329139 1.005442769 0.90085086 0.934984419 0.926290314 1.014615171 0.950117383 0.930063023 0.909402859 0.850934605 0.875509003 0.927598224 0.938456198 322434801 pme Granulicella tundricola Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Granulicella; 1.491939453 1.48743108 1.470934538 1.465886356 1.453359567 1.48146593 1.437777464 1.489677266 1.446541869 1.450923898 1.464806814 1.502973655 1.420511157 1.41521777 1.462833383 1.447030605 1.449682645 1.430233265 22651419 poba Pseudomonas mendocina Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 1.043627221 1.051838684 1.005429254 1.037786236 1.02185121 0.97388183 1.017817046 1.045049387 1.052964615 1.032605961 1.015480555 1.012968453 0.996782769 1.036236116 0.972318588 1.010145914 1.030465423 1.063976817 76057573 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.092208349 1.068104699 1.031542172 1.072573911 1.003239506 1.041389512 1.012515319 1.124044443 1.042142283 1.039534299 0.989287298 1.020442392 0.947131353 0.99707805 0.98127126 0.972646306 1.052662575 1.069193529 325949223 ara Nocardioidaceae bacterium Broad-1 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae; 1.101091203 1.076453961 1.086032059 1.077851338 1.038113748 1.076646204 1.004922866 1.038206678 1.084344707 1.072880088 1.042569223 1.048729885 1.02020559 1.061690163 1.037542123 1.026667102 1.084985516 1.086407767 302468181 xylanase Streptomyces viridochromogenes DSM 40736 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces viridochromogenes; 0.966238742 0.964491868 0.90768421 0.975528953 0.905416635 0.956778414 0.951615795 0.884446726 0.945728751 0.979708966 0.968032629 0.942358722 0.879874513 0.887113048 0.838187364 0.893620273 0.956038405 0.928467408 206601957 amyA Leptospirillum sp. Group II '5-way CG' Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Nitrospirae;class:Nitrospira;order:Nitrospirales;family:Nitrospiraceae;genus:Leptospirillum; 1.146796575 1.094217017 1.239160271 1.135842369 1.118195089 1.043713688 1.014331034 1.100708061 1.113505414 1.073635143 1.118096763 1.151924326 1.063284883 1.019424376 1.120803412 1.061823709 1.104716084 1.104692576 269218142 amyA Actinomyces sp. oral taxon 848 str. F0332 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 848; 0.787703426 0.808150392 0.855409436 0.990640001 0.823714622 0.852700062 334892478 Bacteriorhodopsin Halorhabdus tiamatea SARL4B Secondary metabolism Pigments Rhodopsin superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halorhabdus;species:Halorhabdus tiamatea; 0.902245969 0.950914271 0.892154042 0.991567789 0.905041056 0.892040294 0.844092023 0.969012986 0.919900714 0.88579868 0.840392335 0.949826545 0.8751887 0.841652767 0.829648067 0.880677153 0.949110189 0.941908804 126630170 mer Marinobacter sp. ELB17 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter; 0.944432253 0.968761433 0.89417464 0.926644259 1.01095195 0.983723195 0.933991149 0.861012907 0.828020936 0.974415054 0.932567131 0.905610329 0.899183175 0.973465114 0.932611487 0.955866011 0.982726485 1.010695277 55229578 ppk Haloarcula marismortui ATCC 43049 Phosphorus Polyphosphate synthesis NA superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloarcula;species:Haloarcula marismortui; 0.956398296 0.812960516 0.843370399 0.880941277 0.945225057 0.949927383 0.8481019 0.91227573 0.908288712 0.832880793 0.879842713 0.844994786 0.858218689 0.876532505 0.90986432 0.827411189 374621891 tehb Ectothiorhodospira sp. PHS-1 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Ectothiorhodospira; 1.032711282 1.09798799 1.068644937 1.039750971 1.043595287 1.069597737 1.014824571 1.013742226 0.98583433 1.045481921 1.008183459 1.054816991 1.002119204 1.000742814 0.973533556 1.020925961 1.033427917 1.054273281 256357533 amyA Catenulispora acidiphila DSM 44928 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 0.944226886 0.96132926 0.949406357 0.944625947 0.9354561 1.010083709 0.930309892 0.929652859 0.954498107 0.920930482 0.961619309 0.952627524 0.891091041 0.906500801 0.842963959 0.902939574 0.932827576 0.983107571 27125563 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.966860878 0.983275836 0.977327694 1.060994356 1.114428217 1.019446378 1.005646544 0.996508549 0.984371239 0.989611115 0.952033333 0.997730177 0.971331595 0.95482043 0.921387163 0.958805602 0.999174877 0.967130352 317969559 CsoS2 Synechococcus sp. CB0205 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 0.900413681 0.792390973 0.86244766 0.843073499 0.864103732 0.796841854 0.823092623 0.861568845 0.807269993 0.892174445 113528998 xylj Ralstonia eutropha H16 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 1.201367005 1.211357029 1.152194354 1.21266015 1.231546733 1.264942241 1.206966476 1.139599297 1.20032816 1.224955391 1.26977694 1.254966115 1.190483702 1.140243815 1.142837082 1.176647317 1.212690612 1.179303848 62184245 exoglucanase Verticillium dahliae Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticilium; 0.979436919 0.908612802 0.908228473 1.007550007 0.849747392 0.879625471 0.900899925 0.896477249 0.938467045 0.90505333 0.924804754 0.938093597 0.875970839 0.876631934 0.852614026 0.921196282 0.991271818 0.893152809 218130385 amyA Bacteroides eggerthii DSM 20697 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides eggerthii; 1.634719441 1.639665797 1.60284413 1.556386299 1.606141316 1.657549517 1.586363555 1.593064812 1.565883787 1.582568368 1.593622226 1.587044662 1.576408189 1.575704093 1.582064473 1.589133939 1.576080425 1.597832048 333936747 ara Novosphingobium sp. PP1Y Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 0.984326424 1.031521318 0.985432662 1.024329075 0.931318335 1.02447541 1.027263855 1.025674752 0.97584469 0.978787534 0.923070454 1.011563155 0.904053383 0.930153087 0.87531031 0.953706089 0.988104874 1.034078285 222452154 alkk Halorubrum lacusprofundi ATCC 49239 Organic Remediation Others NA superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halorubrum;species:Halorubrum lacusprofundi; 0.985504094 0.994648301 0.907473603 0.95267571 0.905396394 0.962165975 0.928812622 0.934271878 0.954585229 0.972285881 0.917015954 0.912998752 0.895321611 0.960669379 0.897016943 0.908920722 0.948923298 0.996276265 334343384 nahf Sphingobium chlorophenolicum L-1 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium;species:Sphingobium chlorophenolicum; 0.795280674 0.863757854 0.840691193 0.823891419 0.846385318 0.877393646 0.853396056 0.785799844 0.891654439 158113291 ppx Frankia sp. EAN1pec Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 0.971920826 1.054042005 1.00069208 1.046874299 1.051746929 1.037292791 0.986038688 0.962311782 0.988101361 1.025431791 0.968657116 0.995187978 1.016999909 0.948951028 0.941016641 1.016023043 1.022978689 1.029046025 217986854 fthfs Bacteroides eggerthii DSM 20697 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides eggerthii; 1.147264871 1.135403322 1.155109216 1.244753241 1.189192042 1.13670475 1.154361527 1.228051512 1.186201903 1.087155791 1.147096028 1.214879849 1.164655644 1.108883079 1.166993923 1.148409629 1.143416001 1.090373865 386825791 poba Serratia plymuthica PRI-2C Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia plymuthica; 1.124984669 1.102519611 1.090640812 1.066211466 1.041589079 1.086242883 1.061848649 1.066856476 1.074881909 1.079819898 1.055692949 1.074187685 1.026462268 1.0485445 1.03085611 1.06079249 1.096431325 1.115124119 330962450 cysJ Pseudomonas syringae pv. maculicola str. ES4326 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 0.863515353 0.824366813 0.800337749 0.846409782 0.898233736 0.850541963 0.850898944 0.787112931 0.833742485 0.841679022 0.847867378 0.828023937 0.826723946 0.856288924 0.845455095 0.829394849 0.850442671 86278357 mannanase Paenibacillus polymyxa Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 0.795896981 0.810126457 326695050 vana Acetobacter pomorum DM001 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acetobacter;species:Acetobacter pomorum; 0.970483971 0.955048862 0.843111282 1.004038843 0.876934314 0.966542527 0.871542304 0.918772123 0.927122875 0.930688204 0.907060509 0.914481072 0.855964987 0.863391662 0.855165214 0.893033745 0.977687217 0.951630176 288961173 pgk Azospirillum sp. B510 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum lipoferum; 1.06206947 1.135025661 1.082525727 1.063975397 1.066235107 1.115472282 1.055190305 1.056411091 1.047563162 1.080051918 1.064533962 1.057988905 1.045473639 1.074306139 1.082997925 1.055573065 1.09765897 1.127409689 255072183 actin_Viridiplantae Micromonas sp. RCC299 Other Phylogenetic NA superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Mamiellophyceae;order:Mamiellales;genus:Micromonas; 0.942235743 0.932433777 0.967744128 0.939677891 0.966606835 1.014380275 0.992283127 0.932512881 0.931058547 1.053451953 1.025214221 0.934179566 0.920191531 0.968770045 0.894702503 0.954696702 0.902873113 0.949868138 364569297 CsoS1_CcmK Hafnia alvei ATCC 51873 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Hafnia;species:Hafnia alvei; 0.909349797 0.846849387 0.926824754 0.935261393 0.889868614 0.875162307 0.933528389 0.949016419 0.928965744 0.89559531 0.832232446 0.891349833 0.874274537 0.821407501 0.823361984 0.931310434 0.881763368 22415761 rubisco Synechocystis trididemni Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechocystis; 0.831085542 0.799408659 0.822100591 0.849161608 0.798612793 0.817714113 0.835139431 0.821569956 0.826045298 0.809333312 0.785076754 0.834295604 0.808991101 0.842368921 0.842467692 384080545 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.052968779 1.007058064 1.018858889 1.026895447 0.992847911 1.003673678 1.007942137 1.010529094 1.018183517 1.023923621 1.02100596 1.013614132 0.988874223 0.974680649 0.958668768 1.008586113 1.298678057 1.043295411 315251516 xylanase Prevotella buccae ATCC 33574 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella buccae; 1.000681844 0.900488356 0.976312164 1.03719419 1.034211165 0.984460013 1.030215077 0.952739858 0.966263089 1.000879693 1.017391711 1.033356537 1.028955722 0.956997866 0.974915729 0.979564204 0.92522798 0.947110377 376261237 endoglucanase Clostridium sp. BNL1100 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium; 1.200000777 1.167564026 1.141701182 1.194690033 1.162172313 1.164705315 1.127870628 1.181923833 1.178596469 1.155782129 1.163473395 1.183438088 1.126483142 1.13886539 1.155142612 1.150635519 1.178717015 1.130595076 386854657 arsc Deinococcus gobiensis I-0 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus gobiensis; 0.893664333 0.915510222 0.88455178 0.892740574 0.879463729 0.914037409 0.888737593 0.867124046 0.860810598 0.912067584 0.908482887 0.875087062 0.904453544 0.865900314 0.916303743 0.902762919 0.920113534 0.913340939 288351737 vgb Frankia sp. EUN1f Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 0.993715919 0.965732375 0.981262704 1.020911001 0.982572435 1.003754034 1.015910811 1.012389111 0.989555013 0.989281264 1.035426572 1.010957985 0.95416038 0.911502269 0.931705731 0.920595711 0.995621931 0.94965653 268590924 CsoS1_CcmK Providencia rettgeri DSM 1131 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia rettgeri; 0.839155478 0.854429911 0.801279983 1.143246799 0.842470687 0.807780487 0.796562881 0.808295759 0.869152563 340028595 tktA Paracoccus sp. TRP Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus; 0.784700643 0.797773175 0.854712977 0.823847934 0.831359998 0.792925693 0.80667914 1.069573287 0.81491776 306516855 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.241868199 1.217712955 1.204152462 1.220421408 1.200018314 1.228569233 1.186111249 1.190586395 1.19449611 1.20005716 1.197058819 1.199836236 1.180704288 1.184702524 1.1712291 1.226198992 1.243927027 1.213445788 302407379 cellobiase Verticillium albo-atrum VaMs.102 Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticilium;species:Verticillium albo-atrum; 0.872918474 0.876655435 0.866633907 0.901590758 0.851286931 0.824562427 0.901194043 0.873304293 0.829897822 0.863303197 0.891805715 0.872342766 0.83780955 84383827 amyA Janibacter sp. HTCC2649 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Janibacter; 0.957841386 0.875257978 0.910384927 0.925765783 0.957771827 0.943739201 0.893194328 0.86898563 0.905581898 0.94395559 0.965016505 0.911907279 0.879824288 0.886677922 0.807639258 0.88745205 0.886691397 0.876157209 15212230 ara Cellvibrio japonicus Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio; 0.817338456 0.802293681 0.846506123 0.826791828 0.849036312 0.804348697 0.823785261 0.815678328 0.846773342 0.820634687 373941622 nifh Ectothiorhodospira sp. PHS-1 Nitrogen Nitrogen fixation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Ectothiorhodospira; 0.97633355 1.004466635 1.005467247 1.004302468 0.970525698 1.007577098 0.975423293 0.97757944 0.967334612 0.932287845 0.946290279 0.990765995 0.964674347 0.943504505 0.970344274 0.95639912 0.985267211 0.970398725 328524694 rgl Bacteroides clarus YIT 12056 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides clarus; 0.921431154 0.860213135 0.96091561 0.846338194 0.858260035 0.886169404 0.863048375 0.835899064 0.829242732 0.862646778 0.860611031 0.853963581 0.827457196 0.913727921 0.870265528 0.859209727 0.799921537 0.888700806 334090051 linb Desulfotomaculum ruminis DSM 2154 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum ruminis; 0.938647536 0.906138187 0.899382502 0.942399887 0.918128668 0.936800464 0.89392198 0.933721749 0.96369935 0.913578935 1.029078458 0.958242261 0.8818711 0.914996957 0.888272802 0.913190868 0.969673411 0.892533564 115526609 beta_agarase Rhodopseudomonas palustris BisA53 Carbon Cycling Carbon degradation Agar superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 0.865638771 0.864803719 0.841722969 0.899074364 0.887506359 0.853981606 0.879230823 0.867088739 0.893708098 0.821524054 0.906335885 0.884227384 0.818449101 0.772426711 0.82265946 0.808548586 0.870286927 294787352 amyA Parascardovia denticolens F0305 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Parascardovia;species:Parascardovia denticolens; 1.369070541 1.351568614 1.349278438 1.350711073 1.322575838 1.393275413 1.323442749 1.345898457 1.31486432 1.307240498 1.331799253 1.325765489 1.315223328 1.28120305 1.283822492 1.319991167 1.345281648 1.306658714 356881271 B_lactamase_A Azospirillum brasilense Sp245 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum brasilense; 1.13433633 1.150963604 1.124022807 1.140518935 1.105339913 1.129064308 1.072533413 1.09732543 1.075776568 1.09217265 1.073514777 1.129204478 1.090214562 1.082798698 1.064720824 1.094465848 1.166614482 1.156937364 350285750 phenol_oxidase Lenzites gibbosa Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Lenzites; 0.865006303 0.834085331 0.832404046 0.879957431 0.870968737 0.850923305 0.836317763 0.850927584 0.864784354 0.817968607 0.842799836 0.872854762 0.855744788 0.894237894 0.87294428 0.857013436 146342198 phn Bradyrhizobium sp. ORS278 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.956116407 0.99471037 0.989922731 1.012496837 1.02089618 1.022306966 0.985217222 0.989055844 0.997085332 0.992266354 0.976861529 0.991891562 1.028694843 0.979047176 0.953384288 1.003450304 1.040254524 0.984180295 332670817 cda Cellulomonas fimi ATCC 484 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas;species:Cellulomonas fimi; 0.823388609 0.824876094 0.806042626 0.825684822 0.819619051 0.809857687 0.823334487 0.827436193 0.845542334 0.827642083 0.857836056 34017154 dsra uncultured bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.91123945 0.942518869 1.016866845 0.965989584 0.947446096 0.936943847 0.911977385 0.921980507 0.905683507 0.884283355 0.86152372 0.902677451 0.920423298 0.854610081 0.834370616 0.903856902 0.975589929 0.916309687 353188446 amyA Mycobacterium rhodesiae JS60 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 0.771677452 0.873552839 0.802355697 0.816334521 240277183 nitrate_reductase Ajellomyces capsulatus H143 Nitrogen N Assimilation NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces capsulatus; 0.955722722 0.88214302 1.038016284 0.996519407 1.02569566 0.928227163 0.968524541 0.974864982 0.975450568 0.932556071 1.068894175 0.946850508 0.974378492 0.872040909 0.879724377 1.046605215 0.960727708 0.928792537 269933986 acetylglucosaminidase Mobiluncus mulieris 28-1 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Mobiluncus;species:Mobiluncus mulieris; 1.091768263 1.162292434 1.097499902 1.119911624 1.15051624 1.120831581 1.090535898 1.089692535 1.092043935 1.133025196 1.126757424 1.120454785 1.147102775 1.089367029 1.053490033 1.126852176 1.126694649 1.108816643 384086268 TIM Acidithiobacillus thiooxidans ATCC 19377 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus thiooxidans; 0.958638497 0.878897887 0.904414776 0.900666938 0.863401791 0.82738537 0.854302636 0.905124468 0.877558019 0.87844488 0.894572447 0.848405564 0.878413342 0.839816478 0.840949569 0.901335352 0.909854949 126709769 TIM Sagittula stellata E-37 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 1.394274308 1.363544267 1.378552253 1.356782392 1.338484379 1.393428759 1.342923076 1.348494501 1.346709066 1.358492048 1.343799588 1.352060177 1.323591801 1.313632634 1.288749818 1.350086675 1.375990108 1.36483709 84686973 soxY Rhodobacterales bacterium HTCC2654 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Maritimibacter;species:Maritimibacter alkaliphilus; 0.862297418 0.851429672 0.825231253 0.834636733 0.796567611 0.867055103 0.816318114 0.806645545 0.866104713 0.850237071 357078581 mannanase Frankia sp. CN3 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 0.957924588 0.961956719 0.970617276 0.968719388 0.953314595 0.963337731 0.901030216 0.940757568 0.94604501 0.959482822 0.937707941 0.943487737 0.953909717 0.938532798 0.925377494 1.044099677 0.96695147 0.977178031 241206442 acetylglucosaminidase Rhizobium leguminosarum bv. trifolii WSM1325 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 0.864592829 0.936100972 0.861889692 0.814201018 0.868560376 0.820782644 0.813900749 0.770522154 0.87226972 0.82396822 0.859236169 0.819061028 0.845943541 0.842798304 0.834524007 0.819224979 0.889604767 294345172 chitinase Salinibacter ruber M8 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Bacteroidetes;order:Bacteroidetes Order II. Incertae sedis;family:Rhodothermaceae;genus:Salinibacter;species:Salinibacter ruber; 0.899631123 0.918379176 0.831648019 0.861967164 0.854553511 0.84285796 0.868382182 0.839910783 0.828707667 0.864509011 55230727 narg Haloarcula marismortui ATCC 43049 Nitrogen Denitrification NA superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloarcula;species:Haloarcula marismortui; 1.209415419 1.169697639 1.192171556 1.218699592 1.234793158 1.207774446 1.242231697 1.214907886 1.218283601 1.194825933 1.201705304 1.223669814 1.18604373 1.15654883 1.204516751 1.204847572 1.191282842 1.180498362 151302186 aps_apra Desulfohalobium retbaense DSM 5692 Sulfur adenylylsulfate reductase NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfohalobiaceae;genus:Desulfohalobium;species:Desulfohalobium retbaense; 1.104102319 1.054311999 1.057808959 1.105059016 1.040869243 1.065670038 1.031032661 1.091779469 1.043766229 1.055841653 1.04087442 1.065027376 1.020202735 1.004120242 1.011844027 1.029023484 1.074068755 1.051632625 153884706 chnb Ralstonia pickettii 12D Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 0.878236977 0.88301545 0.896856523 0.930692164 0.895642114 0.898101988 0.904525889 0.859817893 0.897587647 0.900538113 0.881424074 0.867635599 0.825616181 0.860256758 0.852099 0.901226929 0.907167537 217502822 mmox Methylocella silvestris BL2 Carbon Cycling Methane Methane oxidation superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Methylocella;species:Methylocella silvestris; 1.117864605 1.086878023 1.071546924 1.120155847 1.090395785 1.08255537 1.100516403 1.087148072 1.097539391 1.07694173 1.087245539 1.094434293 1.043857706 1.038068053 1.035253549 1.048009058 1.086574382 1.12574285 1255480 nifh unidentified bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.810922144 0.792880449 148553994 pcag Sphingomonas wittichii RW1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 0.879949312 0.88475296 0.82130014 0.888936753 0.885361255 0.843495045 0.872012267 0.893833315 0.883694753 0.896360012 0.892252116 0.858640351 0.852078202 0.858723449 0.832959201 0.899176838 0.84577424 0.905092319 295422879 PRI Agrobacterium tumefaciens str. C58 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium fabrum; 1.453983414 1.444038207 1.412700115 1.434077905 1.452230519 1.477347468 1.43868157 1.442431808 1.430897873 1.40871346 1.434152719 1.437106561 1.409745778 1.386238833 1.437643304 1.428568952 1.46586662 1.383926642 119503015 dmdA marine gamma proteobacterium HTCC2080 Sulfur DMSP degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 0.95675981 0.940625084 0.861991826 0.922120555 0.997618992 0.913933734 0.934071513 0.903706875 0.952372173 0.886047589 0.886883646 0.901178086 0.903327902 0.840866508 0.802044052 0.828207545 0.928308196 0.936426125 302338429 amyA Spirochaeta smaragdinae DSM 11293 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Spirochaeta;species:Spirochaeta smaragdinae; 0.837860441 0.783598398 0.934253082 0.898575451 0.878199728 0.983128884 0.892801491 0.83842905 0.802080856 0.901907858 0.800956536 0.804437656 0.834752986 0.8965429 0.965643966 0.875211428 1.028800509 0.951341955 169762876 ara Aspergillus oryzae RIB40 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus oryzae; 0.91878973 0.935876762 0.897952259 0.942334728 0.907592909 0.906160676 0.876419614 0.954487524 0.957181541 0.911538502 0.905618108 0.932028713 0.883007942 0.879726628 0.868106215 0.872203662 0.921241391 0.915030661 403655455 amie Mycobacterium fortuitum subsp. fortuitum DSM 46621 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium fortuitum; 1.132168153 1.107422954 1.081171418 1.111284445 1.065848319 1.129844667 1.093033304 1.112547944 1.108057548 1.103513607 1.073325384 1.090521887 1.082904183 1.107086116 1.067431233 1.097419688 1.131545567 1.127005668 255325387 ppx Corynebacterium tuberculostearicum SK141 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium tuberculostearicum; 0.897454552 0.890917466 0.925210093 0.824868696 0.828876864 0.809507429 0.870547551 0.850573404 0.846968982 0.82319108 0.897587227 0.918486345 71001696 phospholipase_A2_fungi Aspergillus fumigatus Af293 Carbon Cycling Carbon degradation Phospholipids superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Aspergillus fumigatus; 1.046875487 1.013372071 1.047784563 1.060187598 0.996845815 1.02571613 1.003003354 1.053482612 1.042673526 1.031753454 0.997072163 1.017122962 0.980682732 0.994167713 0.907441376 0.997843889 1.041305015 1.024209583 87286596 glucoamylase Blastopirellula marina DSM 3645 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Blastopirellula;species:Blastopirellula marina; 1.508528468 1.424590603 1.467875115 1.475402776 1.440306844 1.473311995 1.451400895 1.487780898 1.470619604 1.441611888 1.464476557 1.491970394 1.434351716 1.429905373 1.461587538 1.472645609 1.456758588 1.414874591 254487049 atzb Roseobacter sp. GAI101 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 0.814102298 0.796524032 0.835686455 0.823292057 219543221 ara Chloroflexus aggregans DSM 9485 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aggregans; 0.88683923 0.879822905 0.896261292 0.961381722 0.909637103 0.903816578 0.884067865 0.936228761 0.915972073 0.92516657 0.903311049 0.975333412 0.911865703 0.883840659 0.944914471 0.883107992 0.884492127 0.860493165 260418250 cellobiase Silicibacter lacuscaerulensis ITI-1157 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria lacuscaerulensis; 0.937961265 0.969618346 0.986503339 1.004831686 1.059101129 1.029019974 1.015076201 0.982096241 0.995605515 1.016077542 1.011355123 1.035379271 1.040190275 1.024871409 1.038959117 1.035921798 1.014642807 1.010632278 375140498 cutinase Mycobacterium rhodesiae NBB3 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 1.158000203 1.148790716 1.194184045 1.145119191 1.135863318 1.165502586 1.133039316 1.136987213 1.137124553 1.126412612 1.129174772 1.123803364 1.149192953 1.120683063 1.104328031 1.143440075 1.186812858 1.150923122 196194725 amie Alcanivorax sp. DG881 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax; 0.822360572 0.813465428 0.80905256 0.858508608 0.82841275 0.813008541 0.821718049 0.796268452 0.856467782 0.807541534 0.825360386 0.797393465 0.815184857 377812571 pchcf Burkholderia sp. YI23 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 1.016059162 0.962871834 0.982482513 1.030644978 0.970635798 0.99505815 0.984400026 0.991854106 1.0317771 0.982577255 0.945447071 0.989234775 0.907325422 0.951067518 0.924947874 0.950398003 0.97782842 0.954181229 386851558 amyA Actinoplanes sp. SE50/110 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes; 1.563389599 1.518236852 1.524124556 1.541796712 1.500386401 1.571279625 1.491377849 1.532712286 1.506648289 1.499999155 1.50927813 1.516737053 1.481512702 1.511453546 1.489663287 1.506564608 1.541762195 1.505942049 342316564 aoxb Bosea sp. 7AGV Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bosea; 0.995198951 1.004406538 0.983008308 1.033852095 0.96276708 0.973644249 0.995531473 0.974868231 0.96734496 0.990158165 0.950039738 0.979841141 0.968763862 0.955590741 0.972274621 0.956853725 1.039898934 1.006293286 315494590 aoxb uncultured bacterium Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 1.283123503 1.276397495 1.287987708 1.268615957 1.265838305 1.35248664 1.215848518 1.26426029 1.260935663 1.255635517 1.266560107 1.261306671 1.233679362 1.240854419 1.412821708 1.238176695 1.274122771 1.293265402 70831139 gdh Trypanosoma brucei brucei strain 927/4 GUTat10.1 Nitrogen Ammonification NA superkingdom:Eukaryota;order:Kinetoplastida;family:Trypanosomatidae;genus:Trypanosoma;species:Trypanosoma brucei; 1.176409462 1.134665498 1.174888029 1.160067965 1.122576884 1.177679097 1.110346303 1.140384097 1.142026537 1.128659038 1.135101132 1.126914098 1.111469104 1.081548016 1.029360238 1.131336834 1.187191026 1.098016941 377561427 bphc Gordonia otitidis NBRC 100426 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia otitidis; 0.802198436 0.802940815 0.844510555 0.804686147 0.869870827 0.823973646 0.836693225 0.882539289 0.830109725 0.803562446 0.860432384 0.819034653 0.838402798 94422635 ppx Sphingomonas sp. SKA58 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 1.058780343 0.998831111 1.033193616 1.081789093 1.003182462 1.022855232 1.020345823 1.118593069 1.087000281 0.981598897 1.023156983 1.044842596 0.966007303 0.963905444 0.979158755 1.016808683 1.058038864 1.026143137 323707611 amyA Vulcanisaeta moutnovskia 768-28 Carbon Cycling Carbon degradation Starch superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Vulcanisaeta;species:Vulcanisaeta moutnovskia; 0.960268664 0.960985031 0.931001007 0.967363543 0.953650488 0.976187108 0.906190715 0.920227326 0.8991502 0.937225362 0.936503747 0.944055096 0.933301456 0.907299563 0.933216438 0.913410053 0.950644581 0.953576286 377520442 nirb Gordonia otitidis NBRC 100426 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia otitidis; 0.941694403 0.93154408 0.976801346 0.950093833 0.97719253 0.979586476 0.962383934 0.963374212 0.921251109 0.976828629 0.956333463 0.930043253 0.911315313 0.884855541 0.825782106 0.817836301 0.948064305 0.950705311 221636260 dehh109 Thermomicrobium roseum DSM 5159 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Chloroflexi;class:Thermomicrobia;order:Thermomicrobiales;family:Thermomicrobiaceae;genus:Thermomicrobium;species:Thermomicrobium roseum; 0.99062029 1.024675529 0.967988902 0.995123814 0.985113323 0.98224807 1.000321065 0.99318859 0.95689535 0.982753084 0.970407678 0.973044421 0.916756268 0.937069086 0.898352739 0.940885381 0.978616465 1.034035547 115390791 pcpe Aspergillus terreus NIH2624 Organic Remediation Herbicides related compound NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 1.193111617 1.19872781 1.156981694 1.177503484 1.116792403 1.185247478 1.104795906 1.132350968 1.165117364 1.133632406 1.140829125 1.158447173 1.115497739 1.141501367 1.124719221 1.126836208 1.180983579 1.134217789 302423926 pec_Cdeg Verticillium albo-atrum VaMs.102 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticillium;species:Verticillium alfalfae; 0.846304408 0.832660948 0.846062864 0.847769949 0.83841081 0.843874024 0.893558765 0.812400482 0.886674111 0.87302225 0.803005397 0.858965446 0.809237246 0.846512754 0.904853238 0.889793704 308187937 cysJ Pantoea vagans C9-1 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea;species:Pantoea vagans; 1.225191405 1.278037029 1.156618511 1.209891642 1.138713148 1.191477484 1.167214442 1.185487884 1.172607896 1.176221547 1.14224833 1.188458643 1.116615419 1.144740146 1.106475034 1.136283745 1.195596157 1.206743724 146192228 SoxA Bradyrhizobium sp. ORS 278 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 1.368649003 1.373326814 1.358638538 1.3359602 1.335853231 1.37653198 1.305905471 1.298299256 1.343230937 1.356417573 1.33196057 1.332731017 1.328875083 1.314279713 1.325633027 1.310661708 1.357993911 1.344200682 54016528 bphF1 Nocardia farcinica IFM 10152 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 1.209316312 1.206395483 1.173195809 1.183144424 1.169097884 1.183995452 1.130848853 1.155550316 1.162038333 1.140126128 1.162683015 1.162598029 1.142460645 1.101780511 1.101079433 1.137259349 1.189900442 1.15405899 323364650 nifh uncultured microorganism Nitrogen Nitrogen fixation NA 1.030670896 1.00998502 1.036696863 1.036329723 1.017535231 1.014255118 0.982626488 0.997839291 1.048142312 0.998804386 0.980487593 0.997192477 1.049670771 0.939324492 0.954327273 0.941652737 1.04005283 1.002785586 330825541 terc Alicycliphilus denitrificans K601 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Alicycliphilus;species:Alicycliphilus denitrificans; 1.131552552 1.101628102 1.103022353 1.110883373 1.072200433 1.091726614 1.042275964 1.063049124 1.092785566 1.102473211 1.080834426 1.100798225 1.09147904 1.068284565 1.009934473 1.075018239 1.110890977 1.085462571 206581044 cueo Klebsiella pneumoniae 342 Metal Homeostasis Copper Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 0.934785058 0.948702128 0.976173489 0.975108003 0.993199849 0.912272545 0.96556967 0.980546515 0.994110218 0.879677057 0.909693946 0.989277269 0.950526165 0.936245286 0.926623395 0.918380052 0.994966374 0.916720056 363720069 arsc Acetobacteraceae bacterium AT-5844 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae; 0.936058026 0.94081307 0.919870028 0.92178034 0.868308395 0.922006133 0.861493371 0.917076847 0.914980597 0.909662603 0.900591064 0.892453462 0.846884888 0.898880044 0.846177093 0.849346991 0.939637505 0.969770777 70984631 alpha_galactosidase_fungi Aspergillus fumigatus Af293 Carbon Cycling Carbon degradation Other superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus fumigatus; 0.907689811 0.906251129 0.938094437 0.978415522 0.910748861 0.918627914 0.877124852 0.925815289 0.926322666 0.939606585 0.878425131 0.925151681 0.867423091 0.944773493 0.894894093 0.878848446 0.973827043 0.897123195 307742876 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.884012132 0.815388617 0.983230234 0.898386747 0.836645905 0.783753456 0.811397579 0.879951834 0.87948563 0.984915336 0.830953606 0.880658917 0.814921082 0.827091725 238612300 glx Moniliophthora perniciosa FA553 Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Marasmiaceae;genus:Moniliophthora;species:Moniliophthora perniciosa; 0.776566477 0.832537667 0.777587419 0.831119095 0.811949477 0.789297696 0.835456872 0.814982394 284927634 alkb uncultured bacterium Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria; 0.831474019 0.788204033 0.800625096 0.861826158 336102148 ppx Corynebacterium resistens DSM 45100 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium resistens; 1.291338231 1.293308739 1.311778941 1.338055588 1.315130503 1.30038949 1.339156179 1.30716834 1.306194133 1.289318455 1.318183395 1.323110633 1.283170778 1.264599471 1.259066978 1.309135739 1.283516596 1.242599637 313902167 terc Thermaerobacter subterraneus DSM 13965 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XVII. Incertae Sedis;genus:Thermaerobacter;species:Thermaerobacter subterraneus; 0.763870237 0.811587426 0.797731692 0.851368189 403728690 bphd Gordonia rhizosphera NBRC 16068 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia rhizosphera; 1.080573907 1.10565955 1.07511126 1.076757963 1.090357058 1.147905594 1.057545084 1.063941823 1.068035069 1.10777749 1.087497712 1.102767704 1.092931819 1.093808668 1.071663828 1.096323511 1.118123286 1.098166334 49530583 xylc Acinetobacter sp. ADP1 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 0.886788025 0.970658791 0.887253297 0.906589223 0.933201309 0.95582331 0.899758315 0.895449316 0.892790367 0.924739526 0.909477691 0.91474499 0.898725202 0.930647676 0.872074955 0.891720958 0.94264747 0.972040249 170134500 bphd Burkholderia ambifaria IOP40-10 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ambifaria; 0.834255769 0.870202095 0.818264074 0.839004721 0.829317708 0.849108734 0.847739422 0.806411121 0.828303958 0.779443478 0.854757247 218174855 amyA Cyanothece sp. PCC 7424 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 0.879100057 0.849412525 0.83079879 0.880075056 0.886190616 0.846396705 0.817845274 0.873510804 0.862677271 0.826987643 0.836828358 0.852835433 0.828845621 0.859344532 0.861938514 117929001 arsc Acidothermus cellulolyticus 11B Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Acidothermaceae;genus:Acidothermus;species:Acidothermus cellulolyticus; 0.957192666 0.913333678 0.899311164 0.910994736 0.86409846 0.911445256 0.860398572 0.870291133 0.925557577 0.884980687 0.863522649 0.891485944 0.841810903 0.848074251 0.842440639 0.922129175 0.894419461 261354019 cellobiase Verticillium albo-atrum VaMs.102 Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticillium;species:Verticillium alfalfae; 0.934575303 0.87246833 0.861793526 0.868878334 0.870349364 0.904067881 0.895795886 0.845986865 0.841220353 0.808977993 0.88749116 0.804747384 0.862850066 0.92058364 342135214 cutinase Mycobacterium colombiense CECT 3035 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium colombiense; 0.932384631 0.848216833 0.876596153 0.856989134 0.808287392 0.839655863 0.787452283 0.875889219 0.880094955 0.833437226 0.81995195 0.844837653 0.883935347 0.877692385 115365025 poba Stigmatella aurantiaca DW4/3-1 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 1.347806716 1.311794533 1.320197843 1.34619565 1.310089466 1.352606904 1.319696064 1.330065191 1.318068117 1.303360234 1.31261236 1.323631514 1.290506074 1.26308383 1.31845278 1.324571083 1.333645386 1.277739727 225043118 ccmL Clostridium asparagiforme DSM 15981 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium asparagiforme; 0.819903109 0.802094825 94471145 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.96907695 0.994082225 0.975822444 0.991496624 0.952377875 1.013180758 0.936049912 0.968437128 0.954723649 0.982415685 1.055748836 1.0087804 0.921969581 0.98129467 0.944825925 0.914070009 1.005754237 0.992406938 294884171 aoxb bacterium enrichment culture clone aoxheteroC99_4W Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 1.125892425 1.139504697 1.119702553 1.109852519 1.127072104 1.145934287 1.109035807 1.143444617 1.102191664 1.120316663 1.117262106 1.126962076 1.114345576 1.094882757 1.108933725 1.106267655 1.114859313 1.103328187 190688154 chitinase Cellvibrio japonicus Ueda107 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio;species:Cellvibrio japonicus; 1.241911706 1.211258461 1.20287824 1.264129358 1.193999019 1.203803568 1.204379134 1.264879662 1.207087062 1.204822555 1.203780581 1.262099888 1.182035249 1.180068816 1.178830579 1.216296852 1.222215969 1.177369071 373098384 arsc Cupriavidus basilensis OR16 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus basilensis; 1.10065649 1.163154737 1.086053761 1.15210715 1.048359792 1.161483226 1.071435625 1.068200989 1.100798018 1.147765787 1.068154445 1.135740799 1.093290599 1.121417452 1.063235415 1.121315664 1.134871986 1.151582388 345284346 fthfs Lactobacillus ruminis ATCC 27782 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus ruminis; 0.811285237 0.791251659 0.865858406 0.800552667 0.78855742 0.808431093 0.798537851 0.807224367 0.815698956 197104151 narg Phenylobacterium zucineum HLK1 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Phenylobacterium;species:Phenylobacterium zucineum; 1.105162956 1.090804012 1.027299261 1.083002345 1.036762336 1.068648641 1.052415353 1.055709663 1.071740859 1.040501299 1.063048543 1.07008891 1.041977944 1.029492042 1.025712268 1.03247563 1.081908662 1.054685446 78093546 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.129609346 1.176978289 1.111746479 1.106462878 1.079958739 1.116976153 1.091360947 1.095742242 1.104945422 1.113913773 1.097816637 1.0778848 1.047948994 1.086395003 1.042884122 1.061415153 1.122482584 1.136339997 371958101 phytase Singulisphaera acidiphila DSM 18658 Phosphorus Phytic acid hydrolysis NA superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Singulisphaera;species:Singulisphaera acidiphila; 1.092893005 1.138917084 1.108466096 1.075013873 1.112559454 1.140414512 1.078428198 1.089477975 1.081767119 1.131444516 1.150537763 1.119450582 1.110263444 1.148788599 1.125773576 1.101486251 1.098230192 1.149930239 313128343 frdA_rTCA Helicobacter cinaedi CCUG 18818 Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Helicobacter;species:Helicobacter cinaedi; 0.875799013 0.810769956 0.903540879 0.900069273 0.867169592 0.791916834 0.811698625 0.810212695 167950118 TIM Endoriftia persephone 'Hot96_1+Hot96_2' Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Endoriftia;species:Endoriftia persephone; 1.003443539 0.923059899 0.977875944 0.981160436 0.97683336 0.943129796 0.951942681 1.011962537 0.91643575 0.945386836 0.948905507 0.98387319 0.868218417 0.920691262 0.932757948 0.861278396 0.949889969 0.968722831 34104418 terc Chromobacterium violaceum ATCC 12472 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Chromobacterium;species:Chromobacterium violaceum; 0.963583424 1.040993646 0.994511131 0.994396402 0.994648761 1.010852806 0.963273524 0.980558045 0.971029311 0.988041309 0.997436508 0.985928316 0.98504134 0.972532201 0.969937491 0.986039498 0.984546361 0.982003331 260173517 acetylglucosaminidase Bacteroides sp. D2 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides; 1.05919949 1.01230627 1.002015712 1.086419586 0.989116625 1.005461905 0.986643393 1.030077983 1.063170952 1.007786145 0.996033753 1.015946315 1.000710924 0.967256948 0.968813459 0.989033486 1.080210023 1.012362388 213926036 atzb Pseudomonas syringae pv. tomato T1 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 0.886520334 0.864319168 0.875583906 0.933857245 0.835689656 0.845313684 0.84657512 0.863049468 0.889247874 0.864459266 0.862893034 0.846361393 0.856011266 0.857530129 0.836991471 0.852361911 0.894721396 0.848214677 88790372 FBPase Nitrococcus mobilis Nb-231 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Nitrococcus;species:Nitrococcus mobilis; 0.931611245 0.924228137 0.891727048 0.958540106 0.941678202 0.972650913 0.884387051 0.910998436 0.904378847 0.925276524 0.918359934 0.940805857 0.919371991 0.906441954 0.908022803 0.927582507 0.935668277 0.918977421 422314325 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.029511031 0.984965491 0.971814795 0.954269425 0.988745848 0.998596899 0.972307768 0.934459219 0.976356178 0.970303048 0.96857432 0.980731318 0.908815721 0.963252388 0.884155287 0.940246495 0.980377458 1.004910538 121556293 FBP_aldolase Verminephrobacter eiseniae EF01-2 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 1.099955746 1.083870975 1.078442422 1.097934706 1.045344012 1.085657565 1.059303801 1.094098283 1.080613599 1.080640632 1.07533452 1.123683076 1.05464747 1.056398436 1.058094 1.049263392 1.119347971 1.083406396 398897015 mult_ring_12DiOx Pseudomonas sp. GM55 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 1.235717159 1.235965232 1.250717262 1.272192706 1.263510516 1.277527206 1.272948786 1.266543482 1.265834878 1.283270801 1.272034992 1.272646566 1.21821195 1.218726312 1.216273661 1.236335684 1.289563894 1.289588091 159145955 nifh uncultured nitrogen-fixing bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 1.270992723 1.279868616 1.234901276 1.237659006 1.215758071 1.280799169 1.203203213 1.239848266 1.22476374 1.241316639 1.234321767 1.22897908 1.191628394 1.235120805 1.195734985 1.214180442 1.243732199 1.270532973 340346392 gdh Prevotella dentalis DSM 3688 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella dentalis; 1.0754567 1.047314033 0.994293869 1.053195553 1.026578837 0.991520714 1.007442294 1.001787385 1.016727798 1.008275468 1.050895175 0.989204537 1.173826959 0.972936353 0.95605284 0.976325285 1.024075385 1.003496207 39941236 tannase_Cdeg Magnaporthe grisea 70-15 Carbon Cycling Carbon degradation Tannins superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 1.136144124 1.105782218 1.174980104 1.126568768 1.075767873 1.125649045 1.090231008 1.112412007 1.102332045 1.088773525 1.092710057 1.129997764 1.081871315 1.094362995 1.071602777 1.09906493 1.122135809 1.093113293 348618410 FBPase Candidatus Glomeribacter gigasporarum BEG34 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Candidatus Glomeribacter;species:Candidatus Glomeribacter gigasporarum; 0.889285188 0.860609311 0.896015071 0.904155835 0.903581492 0.901754786 0.925367154 0.926794739 0.844150305 0.873130283 0.889806527 0.909070001 0.868621625 0.829538337 0.851748571 0.876831697 0.921510211 0.875094031 348173342 ben_bcla Saccharopolyspora spinosa NRRL 18395 virulence NA NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora spinosa; 0.930036809 0.963318134 0.9363945 0.973575522 0.935560739 0.940532125 0.92023792 0.958480045 0.940469869 0.93998601 0.924844504 0.903815452 0.876021682 0.887603373 0.835555245 0.830143697 0.99997171 0.954098591 336365917 glx Serpula lacrymans var. lacrymans S7.3 Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Boletales;family:Serpulaceae;genus:Serpula;species:Serpula lacrymans; 0.94403528 0.85693419 0.8875656 0.944971962 0.957976792 0.923077784 0.983911715 0.925044007 0.942241538 0.919236487 0.861691846 0.93835091 0.888772108 0.884942761 0.862348919 0.902833796 0.87935049 0.895052176 150955520 mhpa Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 0.948070367 0.895233586 0.882913672 0.951816289 0.849388573 0.943935164 0.933678082 0.992974998 0.954416921 0.968164231 0.902714491 0.927177124 0.833769699 0.944970787 0.825414721 0.840403208 0.924328527 0.96200693 374568122 arsc Alishewanella jeotgali KCTC 22429 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alishewanella;species:Alishewanella jeotgali; 0.861512788 0.890019102 0.883389612 0.88374429 0.858865516 0.845893706 0.814376631 0.842424706 0.873230014 0.835343932 0.839031323 0.851838409 0.843146635 0.854639097 0.850386558 0.846842861 0.891787988 0.910459769 151362235 nitro Kineococcus radiotolerans SRS30216 Organic Remediation Others NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Kineosporiaceae;genus:Kineococcus;species:Kineococcus radiotolerans; 1.218078962 1.162395533 1.178321124 1.190686646 1.142049826 1.187270508 1.142035066 1.167963237 1.17211201 1.15023992 1.153331795 1.165295737 1.139519828 1.148115181 1.133025014 1.14743928 1.202769481 1.143892907 339483888 tktA Nitrosomonas sp. Is79A3 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas; 0.98795075 0.976919664 0.967598952 1.008448033 0.979294211 0.971835815 1.007653012 1.009862924 0.989602722 0.978650043 0.972746859 0.999820625 0.938278276 0.963994385 0.99018569 0.942510264 0.94609208 0.988488766 116179278 pec_Cdeg Chaetomium globosum CBS 148.51 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 0.890302251 0.920588699 0.955528187 0.909165979 0.905066425 0.903147206 0.900775464 0.94638895 0.914802419 0.929016605 0.89233623 0.929396876 0.888129552 0.888438902 0.879069896 0.885963686 0.9039305 0.94005239 359424109 nfsa_2 Gordonia amarae NBRC 15530 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia amarae; 1.245872496 1.223905036 1.227513697 1.230415952 1.244456126 1.253334134 1.193276027 1.211634489 1.209791152 1.205497384 1.216166851 1.237854253 1.190143511 1.198010239 1.140875011 1.208859664 1.283658872 1.232424614 311033176 amyA Bacillus sp. m3-13 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 0.922391946 0.905968844 0.931564604 0.919632037 0.91896747 0.908177984 0.92338142 0.93891635 0.980727655 0.938183794 0.91148184 0.911725299 0.949738195 0.85850914 0.896229752 0.875980922 0.954781148 237684176 bphF1 Teredinibacter turnerae T7901 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;genus:Teredinibacter;species:Teredinibacter turnerae; 0.90691346 0.919656911 0.904805236 0.944799643 0.913410441 0.958506373 0.941612199 0.88049229 0.93774276 0.925956689 0.933657523 0.948888174 0.898198164 0.90205714 0.861401927 0.922478397 0.911092298 0.888179084 374636588 dsra Methanotorris formicicus Mc-S-70 Sulfur sulfite reduction NA superkingdom:Archaea;phylum:Euryarchaeota;class:Methanococci;order:Methanococcales;family:Methanocaldococcaceae;genus:Methanotorris;species:Methanotorris formicicus; 0.962640818 0.955845235 0.868393557 0.908655173 0.898296651 0.788019357 0.946388448 119504926 bphF1 marine gamma proteobacterium HTCC2080 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 0.949617423 0.91893131 0.873265954 0.977788726 0.85524692 0.903787542 0.872812011 0.931944462 0.955304557 0.898425822 0.882662372 0.890909877 0.802927084 0.853077116 0.860569862 0.849090313 0.979733644 0.952185397 192764428 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.890756401 0.892863286 0.880325258 0.887330563 0.895996713 0.913514212 0.886701302 0.882076871 0.889687685 0.900582574 0.876659433 0.864978994 0.808972999 0.810515103 0.829831335 0.832866061 0.918175372 0.891982513 74318308 phn Thiobacillus denitrificans ATCC 25259 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus;species:Thiobacillus denitrificans; 0.802660381 0.933914027 0.864827647 0.968429733 0.856656616 0.864602944 0.889466854 0.870928982 0.821800149 0.861945792 0.863638308 0.888370982 0.865118127 0.917032796 38232603 urec Yersinia intermedia Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia; 0.920310414 0.947893913 0.970422883 0.927627092 0.940986323 0.89500443 0.932715157 0.950332657 0.937858011 0.922033972 0.933147625 0.947891692 0.934537839 0.887921556 0.846814572 0.880061452 0.932165671 0.913516065 146217337 mmox uncultured bacterium Carbon Cycling Methane Methane oxidation superkingdom:Bacteria; 0.932338891 0.862109335 0.928542357 1.025669832 1.022682557 0.951703821 1.016212897 1.021824365 1.076038474 0.916100109 0.925817156 0.856494367 0.926803737 0.834060911 0.959183046 0.978167781 0.99938317 1.022779716 343498696 PRI Vibrio tubiashii ATCC 19109 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio tubiashii; 1.208142122 1.124236382 1.174844756 1.19191971 1.053288974 1.11131257 1.056815888 1.13617785 1.156636517 1.106353931 1.121439551 1.103509025 1.085272743 1.09199509 1.079836657 1.064954594 1.150753976 1.13554155 114320425 soxY Alkalilimnicola ehrlichei MLHE-1 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Alkalilimnicola;species:Alkalilimnicola ehrlichii; 0.777980686 0.788866987 0.83732372 0.837961422 0.845527955 0.833610749 0.820198567 0.853844821 0.821020566 0.811341669 0.879744915 109290313 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.076892071 1.086400501 1.043065015 1.079870706 1.036788397 1.058355798 1.03594213 1.071336661 1.055864374 1.070441132 1.024642217 1.061105895 1.022974739 1.019597795 0.95628356 1.036808132 1.049257036 1.068751551 298551117 amyA Arthrobacter sp. FB24 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 0.795250298 0.832232214 0.776001511 0.861358774 0.791117358 0.886044851 0.802621177 0.781570092 0.852834376 0.841242435 0.826259246 0.865950275 0.817224894 19070843 nifh unidentified nitrogen-fixing bacteria Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 1.004131449 0.930677495 0.947496352 0.965703707 0.930132652 0.944491228 0.927217393 0.940539604 0.948263272 0.899946206 0.984043185 0.937956678 0.902262556 0.908676925 0.896220217 0.89098644 0.936833911 0.949888277 45386135 narg unidentified bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.069336554 1.069042103 1.041824835 1.035808434 1.016064154 1.009463957 1.014546096 0.999503953 1.017227776 1.024583797 1.027785902 1.040355545 1.029544875 0.988341251 0.970586589 1.005098878 1.057289979 1.039899197 262194709 endochitinase Haliangium ochraceum DSM 14365 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Haliangiaceae;genus:Haliangium;species:Haliangium ochraceum; 0.92162861 0.8989977 0.905943133 0.894990415 0.888794275 0.91180627 0.878416291 0.888525846 0.866308152 0.896657284 0.877497064 0.838083703 0.836102987 0.876981329 0.842239731 0.874131311 0.897403426 237899460 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.927237059 0.918099508 0.888873657 0.918811727 0.907373223 0.885582921 0.865800818 0.88954906 0.950792304 0.916835183 0.891709191 0.919284307 0.853034503 0.917729704 0.867876928 0.890048243 0.915588682 0.898415737 409118724 xylg Pseudomonas sp. Chol1 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.946373986 0.907471589 0.956641476 0.947366928 0.922626365 0.964943811 0.935781492 0.923522119 0.918778937 0.926332457 0.918586939 0.934379184 0.91396964 0.896433717 0.876980885 0.942815968 0.937879254 0.962002851 302439563 xylj Streptomyces sp. AA4 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 1.186395613 1.186339173 1.17001469 1.178464812 1.167556659 1.165093524 1.160927406 1.185172482 1.139709608 1.133573092 1.126858069 1.182877765 1.146893651 1.097502477 1.119770978 1.147378266 1.173510871 1.140364286 396935292 mult_ring_12DiOx Rhodococcus sp. JVH1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 0.798664448 0.838904297 372474191 ara Opitutaceae bacterium TAV5 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 0.982684859 1.014793492 0.91417588 1.032455936 0.952376925 0.966787956 0.947375108 0.994657582 1.00134938 0.966005023 0.941570969 0.988476226 0.931258169 0.919215244 0.923460011 0.948130372 1.007218112 1.000157622 357406550 fthfs Methylomicrobium alcaliphilum Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylomicrobium; 0.882148572 0.883522581 0.887503924 0.857253829 0.890197071 0.862034499 0.842820591 0.846718325 0.908241367 0.823986417 0.844647263 0.809247792 0.77044913 0.825335842 0.801563435 0.823958406 0.855415807 297148703 poba Streptomyces sviceus ATCC 29083 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 0.912829956 0.994282967 0.942046736 0.957470435 0.96205878 0.998189855 0.969691728 0.918349599 0.939819791 0.97561855 0.963602338 0.973830219 0.937208668 0.984883327 0.965375273 0.947394044 0.913651208 0.932483764 285026943 tfda uncultured bacterium Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria; 0.931867737 0.937991722 0.883432432 0.967716045 0.891808553 0.976664861 0.877113199 0.961817548 0.918313717 0.966769592 0.915667192 0.900133953 0.875234701 0.977354305 0.953969106 220919931 SoxC Methylobacterium nodulans ORS 2060 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 0.977087092 0.922829899 0.929029783 0.948939524 0.869544223 0.920715907 0.868729807 0.940287167 0.960618653 0.907097212 0.895652235 0.943939987 0.908941116 0.873893822 0.849847505 0.893901862 0.962753137 0.925697199 111026377 tfdb Rhodococcus jostii RHA1 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 0.78258618 0.909871147 0.817665437 0.823800739 0.813104114 162448335 pcpb Sorangium cellulosum 'So ce 56' Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 0.946579464 0.939146176 0.93774986 0.973543703 0.941072848 0.934527836 0.93075525 0.94620014 0.940182757 0.928697573 0.930751566 0.951885286 0.918556658 0.91537444 0.878430264 0.87893959 0.953605694 0.96619867 81168197 FBPase Synechococcus elongatus PCC 7942 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus;species:Synechococcus elongatus; 1.118824579 1.09649081 1.082954344 1.120146271 1.110278389 1.097452652 1.105607285 1.118748017 1.087698847 1.075265149 1.111940052 1.137806123 1.064141196 1.024708136 1.037844514 1.06028303 1.113880246 1.118829734 237785400 urec Corynebacterium kroppenstedtii DSM 44385 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium kroppenstedtii; 1.221658836 1.236913312 1.235059833 1.244580541 1.230457678 1.258948285 1.248942635 1.236382998 1.201978794 1.213397725 1.219773213 1.233100406 1.20413096 1.215005322 1.196208928 1.208597479 1.240673781 1.248353918 37726856 dsrB uncultured prokaryote Sulfur sulfite reduction NA 0.879203207 0.837437888 0.872641841 0.88964077 1.144034814 0.889716136 0.854194595 0.878200983 1.07164391 0.867070094 0.796776129 0.827789447 0.872851512 0.899747437 0.818703737 0.884734516 0.86765184 109804235 mdlc Pseudomonas putida Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 1.282719912 1.196789968 1.251461149 1.230364056 1.228610389 1.237180103 1.205027767 1.208616391 1.237729897 1.244116091 1.237771317 1.242213729 1.225363414 1.226992212 1.210260579 1.193697817 1.230253586 1.206926545 115388175 tannase_Cdeg Aspergillus terreus NIH2624 Carbon Cycling Carbon degradation Tannins superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 1.02966492 1.047193045 1.003278644 1.025865542 1.030034678 1.010089702 1.009023693 1.029886771 1.01242792 1.017263663 0.979112252 1.023601339 0.959370242 1.00715161 0.92799621 0.992783881 0.997903964 1.065702175 304357069 acetylglucosaminidase Pantoea sp. aB Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 0.836831487 0.792778039 0.845492816 0.811500413 0.848546951 0.84052895 0.811897381 0.882341149 0.870383034 0.813519504 0.839437706 302448422 poba Streptomyces sp. C Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 1.200342254 1.19632834 1.184721351 1.197868127 1.197872647 1.22699771 1.213631623 1.201240848 1.207397669 1.181817789 1.188874327 1.192296286 1.144434639 1.155190842 1.138623833 1.155511 1.219921387 1.216872783 115371545 phenol_oxidase Coprinopsis cinerea okayama7#130 Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 0.991487971 1.005808107 0.978035858 1.004656833 0.978349006 1.002084671 1.018536262 1.029415582 1.017100561 0.998596658 0.907716884 0.982307 0.881778594 0.923608552 0.847125971 0.940232945 0.906436437 0.915664856 383837983 oxdb Rhodococcus imtechensis RKJ300 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus imtechensis; 0.903826438 0.946965401 0.940251918 0.960331265 0.920344084 0.937836857 0.847584497 0.898541069 0.939858857 0.951270319 0.91802309 0.933752089 0.951984978 0.953315724 0.880952417 0.911067379 0.957021768 0.920669199 300718113 cysI Erwinia billingiae Eb661 Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia billingiae; 0.846945818 0.817525138 0.876510348 0.784265437 219546032 dsra Candidatus Methanosphaerula palustris E1-9c Sulfur sulfite reduction NA superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;genus:Methanosphaerula;species:Methanosphaerula palustris; 0.85025065 0.871778051 0.889209979 0.86898249 0.879638988 0.868727525 0.883785813 0.850160035 0.883382658 0.884649436 0.889639524 0.818090481 0.861201758 0.860106503 0.824379509 378592764 urec Nocardia brasiliensis ATCC 700358 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia brasiliensis; 0.897704447 0.900134161 0.969155851 0.915978843 0.880059239 0.905378989 0.837422621 0.855717056 0.875176473 0.870572397 0.962496408 0.884216796 0.795853417 0.821508706 0.875017009 0.858483276 0.904405316 0.911638579 299470011 actin_Stramenopiles Ectocarpus siliculosus Other Phylogenetic NA superkingdom:Eukaryota;phylum:Phaeophyceae;order:Ectocarpales;family:Ectocarpaceae;genus:Ectocarpus; 0.953568278 0.896617496 0.92915234 0.968248427 0.92831347 0.892918766 0.912876139 0.931512197 0.926439987 0.886840043 0.924828379 0.953130606 0.912222157 0.812954077 0.837698139 0.899895426 0.910536169 0.911575409 254941666 invertase_fungi Capnodium sp. olrim506 Carbon Cycling Carbon degradation sucrose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Capnodiales;family:Capnodiaceae;genus:Capnodium; 1.125302447 1.152934394 1.126446975 1.132099276 1.160084645 1.168121697 1.119487125 1.13651607 1.091840397 1.140469368 1.138458513 1.132050172 1.162694897 1.153169103 1.14997998 1.135818357 1.158190469 1.143781203 271962489 amyA Streptosporangium roseum DSM 43021 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 1.157782446 1.096373889 1.129277444 1.130255128 1.137744966 1.127223827 1.115899359 1.130891761 1.134867789 1.119035405 1.085023916 1.158532502 1.084371625 1.071956632 1.099046678 1.097530642 1.141639474 1.128818511 217980017 amyA Methylocella silvestris BL2 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Methylocella;species:Methylocella silvestris; 1.091201293 1.054691586 1.069728889 1.081564045 1.048901164 1.064219577 1.035351003 1.083853507 1.045138077 1.05701708 1.070885807 1.070047923 1.039519598 1.076752966 1.056754079 1.051697745 1.065918763 1.057054965 354825447 rubisco Methanolinea tarda NOBI-1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;family:Methanoregulaceae;genus:Methanolinea;species:Methanolinea tarda; 0.861343753 0.849709295 0.836465542 0.858141094 0.801909153 0.835358604 0.826189607 0.834178681 0.848886003 0.827646779 0.847753868 0.831274982 0.853988646 0.818138447 0.878920463 0.908108468 326947321 PEPC Thermoproteus uzoniensis 768-20 Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Thermoproteus;species:Thermoproteus uzoniensis; 1.075383301 0.977409812 0.92288584 0.979874054 0.943222748 1.004030396 0.978327767 0.984142164 1.008491124 0.993797033 0.962332158 0.971914494 0.921356399 0.95579165 0.959840475 0.978897274 0.985274311 0.98779473 302882434 pec_Cdeg Nectria haematococca mpVI 77-13-4 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Nectria;species:Nectria haematococca; 1.001454444 1.026655126 1.004354389 0.999938231 1.002298169 1.109918621 1.022224923 0.973819411 1.022997022 1.018222857 1.027148763 1.015608734 0.981386894 0.952414552 0.860922878 0.962923295 1.070934467 0.976061837 111071938 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.817836145 0.829838296 0.841768216 0.859451853 0.850426868 0.821384121 0.847844126 0.806029817 14276799 dsra Desulfotomaculum geothermicum Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum; 0.83135055 0.837076138 0.812301333 0.827441626 257454574 mer Enhydrobacter aerosaccus SK60 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Enhydrobacter;species:Enhydrobacter aerosaccus; 0.803169399 0.894589211 0.86492837 0.78805718 0.809740027 0.839962688 0.820841509 0.800217376 0.806626926 0.806910933 0.781997064 0.845460551 83840203 FBP_aldolase Sulfitobacter sp. NAS-14.1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 1.057174556 1.035197015 1.078349606 1.083309416 1.059603675 1.060162583 1.0486996 1.049066117 1.052337968 1.094252839 1.075529038 1.087574917 1.009471458 1.04638066 0.977233358 1.025240409 1.018467258 1.002661024 294972251 merb Brevibacterium mcbrellneri ATCC 49030 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Brevibacteriaceae;genus:Brevibacterium;species:Brevibacterium mcbrellneri; 1.037891378 0.924429517 0.908410235 0.976549956 0.882134909 0.862813686 0.86211965 0.870198031 0.893286392 0.899931942 0.858253841 0.877078838 0.804047039 0.843591737 0.863452471 0.930414772 0.932329453 197931425 exochitinase Streptomyces sviceus ATCC 29083 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 1.202579384 1.213678329 1.187515338 1.210814812 1.227185537 1.214211524 1.18142194 1.190427032 1.192610552 1.183883878 1.200242906 1.215237366 1.149085001 1.164479467 1.154941599 1.15196814 1.21280655 1.197901116 99030632 ppk uncultured bacterium Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria; 0.782441676 0.847757395 0.808154524 0.829039873 0.812978207 0.771784688 0.871106471 0.841035862 0.862511917 0.773444769 0.865977872 166087500 FBPase Microcystis aeruginosa NIES-843 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Microcystis;species:Microcystis aeruginosa; 0.999708616 1.049650594 1.04201466 1.055109054 1.017977228 1.00145279 0.977775008 0.956097167 1.023944675 1.025944096 1.027975063 1.054221481 0.993707459 0.971705718 0.973016905 1.047553499 0.938683053 0.999561869 226718503 GAPDH_Calvin Azotobacter vinelandii DJ Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Azotobacter;species:Azotobacter vinelandii; 0.844335504 0.794495632 0.809551851 0.793335003 0.859086033 0.813534721 0.787988161 0.8242674 374815474 fthfs Treponema primitia ZAS-1 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema primitia; 0.786217639 0.825015351 0.763922734 0.831115409 283814573 amyA Spirosoma linguale DSM 74 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Spirosoma;species:Spirosoma linguale; 0.821862599 0.867397632 0.81765326 0.875417209 0.80677547 0.796852453 0.840238561 0.852241483 0.830369655 0.838802313 0.817407014 0.869690004 222544016 soxY uncultured sulfur-oxidizing bacterium Sulfur Sulfur Oxidation NA superkingdom:Bacteria; 1.004756994 1.013430525 1.039992639 0.937321729 0.962698141 0.946085175 0.933954986 0.960051002 0.935287796 0.963595023 0.958448598 0.929911309 0.935127703 0.933367783 0.874355691 0.895771873 0.971978512 0.926584786 126726914 ppx Rhodobacterales bacterium HTCC2150 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 1.251326067 1.038442416 1.064377609 1.140938887 1.098109364 1.105695354 1.11307987 1.108052296 1.116685942 1.077888844 1.075148059 1.136037298 1.0366149 1.021482491 1.003606158 1.141219932 1.078909717 1.084836499 113529104 bphc Ralstonia eutropha H16 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 0.954955613 0.981147938 0.861309345 1.00845274 0.963297396 0.96068947 0.968764393 0.882712508 0.92718535 0.965583199 0.889782092 0.928901804 0.968610023 0.930284903 0.900206253 0.931652389 0.946840165 0.969884815 359787975 pcag Mesorhizobium alhagi CCNWXJ12-2 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium alhagi; 1.125935028 1.188139733 1.126096771 1.132109509 1.112019453 1.155182718 1.136791358 1.130987398 1.125218279 1.132475428 1.107736277 1.136190856 1.080432793 1.09469168 1.030589852 1.083271238 1.140483007 1.144140421 161381297 cpne Oceanibulbus indolifex HEL-45 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanibulbus;species:Oceanibulbus indolifex; 0.951891891 0.910123242 0.933203349 0.97835792 0.985758928 1.016441712 0.911554507 1.055117934 0.96242965 0.935650023 0.939009695 1.136492581 0.926751434 0.903226287 0.996131202 0.909882097 0.925342235 0.909852268 388550256 amyA Pseudomonas chlororaphis O6 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas chlororaphis; 1.164040657 1.168628645 1.112045135 1.163172342 1.155060938 1.189227329 1.138022295 1.137847123 1.147315224 1.151088551 1.144480384 1.12701568 1.094386265 1.12877581 1.077549819 1.149310225 1.149832643 1.148529177 110632685 arsc Mesorhizobium sp. BNC1 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 0.89573792 0.870693708 0.89170588 0.900124893 0.883016355 0.868623143 0.843466654 0.810113055 0.862731541 0.802193926 0.831667364 0.867245237 0.834479829 0.817289961 0.82449486 0.91475776 0.899025888 333604207 chitinase Paenibacillus sp. HGF7 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 0.855022554 0.792111508 0.832406513 0.819381342 0.828089728 110285386 cmci Chelativorans sp. BNC1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 0.783249648 0.803417396 359839455 ara Actinoplanes sp. SE50/110 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes; 1.073638361 1.104005787 1.089075049 1.080281564 1.088654321 1.101225937 1.092933343 1.064343404 1.074341025 1.093530424 1.092523816 1.080380016 1.077317558 1.069428299 1.037441153 1.072260944 1.087280775 1.092549147 119958175 tfth Mycobacterium vanbaalenii PYR-1 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 0.803446955 0.826921839 0.834357319 0.807096556 0.799418323 0.861178513 0.807487699 0.870318836 0.895749983 0.815579799 169858289 glucoamylase Coprinopsis cinerea okayama7#130 Carbon Cycling Carbon degradation Starch superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 0.771452051 0.817316236 0.847456152 0.823950506 0.792527957 0.818299447 0.843160453 281300792 nrfa Prevotella buccalis ATCC 35310 Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella buccalis; 0.822477932 0.811307806 0.805077921 0.820933955 99083075 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.987718172 0.958748529 0.953093376 0.985618269 0.957728484 0.978956966 0.965646098 0.98334922 0.983874093 0.917627724 0.928173499 0.950236969 1.165375517 0.884491867 0.922766852 0.867248993 0.976946034 0.960429911 333897898 CsoS1_CcmK Thermoanaerobacterium xylanolyticum LX-11 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacterales Family III. Incertae Sedis;genus:Thermoanaerobacterium;species:Thermoanaerobacterium xylanolyticum; 0.865141426 1.000958492 0.999604701 0.963914576 0.943508235 1.005982391 0.916069438 0.899244401 0.909745678 0.949876277 0.908394068 0.949840791 0.939764748 0.950498765 0.925086781 0.95912242 0.926345803 0.962228693 149812794 arsc Roseobacter sp. AzwK-3b Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 0.863106152 0.790027012 0.767752914 302189467 phytase Pseudomonas syringae pv. syringae 642 Phosphorus Phytic acid hydrolysis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae; 0.870684964 0.844569296 0.861156333 0.868295694 0.853407036 0.90970372 47155106 mcra uncultured methanogenic archaeon Carbon Cycling Methane Methanogenesis superkingdom:Archaea;phylum:Euryarchaeota; 0.774744064 0.807915429 0.790094091 0.798486682 0.8043408 376399419 mdlc Klebsiella oxytoca 10-5250 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella oxytoca; 0.790005479 0.85213141 0.813467595 0.867045886 0.822494606 0.822691077 0.829193308 0.813522801 0.867240155 0.870948224 320450230 bphF1 Thermus scotoductus SA-01 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus;species:Thermus scotoductus; 1.052200131 1.008989576 1.05360246 1.11903532 0.994263098 1.029455699 0.985360763 1.033355511 1.030222314 1.053090185 1.016736224 1.07814451 0.982370523 1.014372595 0.991898064 1.122484493 1.022992835 1.024741848 92912811 pcpb Mycobacterium sp. KMS Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 1.003970825 1.022817697 0.962680656 0.987904784 0.968572715 0.975613091 0.945091103 0.913426752 0.955676055 0.973901424 0.9455611 0.953509959 0.928465594 0.953390006 0.876057126 0.900455343 0.982866078 1.010352314 300545463 amyA Chelativorans sp. BNC1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 0.841144774 0.884719044 0.819920614 0.90704608 0.839343155 0.868502007 0.841410492 0.873711436 0.833620046 0.885974704 0.858664624 0.841950017 0.85241743 0.87765816 0.87699557 0.868853786 0.882998829 21229847 cmci Xanthomonas campestris pv. campestris str. ATCC 33913 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas campestris; 0.838610486 0.876038755 0.857593235 0.892171201 0.856837965 0.897124767 0.900645942 0.8479677 0.868631844 0.882362482 0.859696488 0.864940454 0.847330585 0.851110826 261213046 chitinase Vibrio sp. RC341 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 0.789326255 1.038509816 0.800779863 1.074034354 1.066177655 0.816198095 1.032664415 0.845989224 0.957037635 1.039580065 1.036781807 0.854520763 0.828433647 63029763 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.933867839 0.870185502 0.829168924 0.879814208 0.820181966 0.854502666 0.865863128 0.858876371 0.878534433 0.813074937 0.82475368 0.868167131 0.835180306 0.81813202 0.845548306 0.916196269 0.873986025 219862122 mer Arthrobacter chlorophenolicus A6 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 1.131226073 1.078337172 0.988816013 1.040262446 1.050800549 1.074472294 0.975520615 1.022169823 1.031687028 0.999724284 0.930499354 1.02384527 0.994025538 1.104827093 0.996144215 0.989456202 1.105748591 1.071570785 326951030 xylj Pseudonocardia dioxanivorans CB1190 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Pseudonocardia;species:Pseudonocardia dioxanivorans; 1.444699665 1.431852895 1.386801041 1.394923698 1.390196459 1.443109818 1.385944449 1.38346737 1.401003717 1.403584286 1.391479707 1.421919034 1.349647002 1.382670198 1.350116942 1.394285322 1.426813769 1.407069378 375078155 amyA Paenibacillus sp. Aloe-11 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 0.79401033 0.806390502 0.784618413 0.812789504 0.803366235 0.788409678 0.84735867 0.798524661 0.773540443 0.865730156 357601159 amyA Novosphingobium pentaromativorans US6-1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium pentaromativorans; 1.014072029 0.988662183 1.011517422 1.024241874 0.994087789 0.934784338 0.93590152 0.972276349 1.004132337 0.994629804 1.02215613 1.027777501 1.004373266 0.964930643 0.895598467 0.953984345 1.007781541 0.976179045 50542690 rubisco uncultured bacterium Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria; 0.784776454 0.797796371 0.81422165 0.855725093 0.826317158 0.786172768 0.848479631 0.825890673 0.829705457 0.831551862 0.799162965 0.823336446 0.829788806 0.794085908 0.811165892 94554960 amyA Deinococcus geothermalis DSM 11300 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus geothermalis; 1.000599599 0.995622809 1.000941753 1.014836598 1.025713923 0.992501767 1.060504205 1.101058583 1.00646088 1.043280475 1.104715881 1.004791324 0.981908665 0.962896119 0.944701926 0.972019319 1.000743016 0.985386247 296091223 pme Thermobispora bispora DSM 43833 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Thermobispora;species:Thermobispora bispora; 1.252669292 1.221710013 1.207479926 1.236820203 1.237328301 1.268890965 1.217173184 1.210438938 1.21641212 1.202675919 1.211912646 1.232770898 1.196955201 1.206134934 1.203679366 1.23031748 1.228588958 1.202817661 383463596 ppx Saccharomonospora xinjiangensis XJ-54 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora xinjiangensis; 0.971612137 0.971579788 0.954043759 1.001779978 1.00794434 0.972158754 0.99630761 1.006919779 0.982489684 0.954105541 0.953926209 0.988769191 1.006832134 0.959790586 0.979650545 0.983062123 0.997808849 0.930456805 341868965 arra Geobacter uraniireducens Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 1.058302489 1.046031385 1.053665513 1.031086596 1.064748451 1.042834394 1.049259182 1.042590465 1.039849592 1.044187713 1.032231252 1.031977084 1.019203684 1.00852436 0.978892693 1.016742562 1.040343474 1.046367398 77378433 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.21130339 1.160076573 1.184558965 1.173505303 1.206489209 1.203537889 1.214835734 1.193156303 1.182528536 1.183815658 1.199589338 1.212374311 1.173535481 1.170806266 1.173204181 1.192194229 1.157022017 1.152115025 30180438 mer Nitrosomonas europaea ATCC 19718 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas;species:Nitrosomonas europaea; 1.353375041 1.359532094 1.327539212 1.329864057 1.326037907 1.373288782 1.295234529 1.310668395 1.30610676 1.292819134 1.300063261 1.307808807 1.306094098 1.292752886 1.305772629 1.309903474 1.362207821 1.323337856 34499923 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.854049357 0.833988793 0.88431043 0.827844226 0.808645092 0.860912907 0.843521987 0.862818856 0.829617435 0.788457612 0.864720152 0.866648364 0.877882124 158337007 cysI Acaryochloris marina MBIC11017 Sulfur Other NA superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Acaryochloris;species:Acaryochloris marina; 0.823991686 0.790117581 0.827290495 0.838282571 0.81045313 0.810091438 0.812795666 0.832389249 0.830228733 0.80108363 0.845158598 0.800569532 0.822423331 224606049 rubisco Natrialba magadii ATCC 43099 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Natrialba;species:Natrialba magadii; 1.052147776 1.039281939 1.0444868 1.027728357 1.03237039 1.015518644 1.015995541 1.017937112 1.02523716 1.012312955 1.022098621 1.019167442 0.986767911 0.966807009 0.978587145 0.971818762 1.043910369 1.052927134 254241317 mult_ring_12DiOx Pseudomonas aeruginosa 2192 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 1.006878083 0.99344612 0.930802322 0.99546505 0.950139851 0.96493634 0.947405363 1.00950569 1.05124393 0.969505022 0.936918682 0.963761321 0.935053172 0.954663646 0.895445586 0.942471427 0.983718693 1.019253374 149177368 fthfs Planctomyces maris DSM 8797 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Planctomyces;species:Planctomyces maris; 0.790136941 0.840539753 0.822341689 0.794565018 319894937 ppk mine drainage metagenome Phosphorus Polyphosphate synthesis NA 1.27799033 1.238297106 1.23889301 1.250130823 1.230877246 1.259022229 1.241435558 1.254060764 1.238491834 1.261639269 1.243797699 1.251643069 1.231994519 1.200587132 1.197228037 1.228857543 1.302066641 1.263779578 346989453 amoa uncultured archaeon Nitrogen Nitrification NA superkingdom:Archaea; 1.44132535 1.380259175 1.367954589 1.375163206 1.37462932 1.35671086 1.349956813 1.361365961 1.313238445 1.342803726 1.354738885 1.389021322 1.306375577 1.294322685 1.300501075 1.326477407 1.375422306 1.326503054 363419801 bphF1 Rhodococcus pyridinivorans AK37 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus pyridinivorans; 0.810480474 0.824182859 0.806096994 0.813018763 0.801514182 0.840983777 0.83171322 0.792632895 0.821188234 84663553 dsrB sulfate-reducing bacterium AR1103 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 0.981743489 0.932139486 1.009666785 1.040624531 0.968996068 0.974380467 0.992818616 0.994404798 0.992951746 0.983631564 0.991050578 1.029299228 0.94709491 0.916973235 0.909945 0.971599929 0.983356355 0.925494251 374657060 ppx Saccharomonospora marina XMU15 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora marina; 0.946742207 1.003703358 0.925215624 0.953884537 0.948076228 0.969903975 0.931400779 0.937970019 0.948693188 0.971678464 0.955384882 0.957362129 0.931004939 0.933887764 0.914974435 0.938135343 0.967655155 0.978398389 197776540 xyla Streptomyces pristinaespiralis ATCC 25486 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces pristinaespiralis; 1.427636564 1.3990477 1.374493896 1.383957193 1.353215628 1.432712374 1.340325949 1.372557255 1.368774145 1.376982256 1.362757755 1.3692616 1.338575342 1.374236059 1.325063723 1.370401233 1.429634848 1.371601973 340348479 amyA Prevotella dentalis DSM 3688 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella dentalis; 1.232393019 1.237605777 1.213447494 1.235152637 1.201696779 1.238233094 1.226961347 1.207681117 1.203243184 1.184954259 1.205595753 1.231739513 1.199561113 1.181324217 1.197952577 1.212561851 1.231905428 1.18480035 320122579 nrfa Desulfobulbus propionicus DSM 2032 Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobulbaceae;genus:Desulfobulbus;species:Desulfobulbus propionicus; 1.049715103 1.06168743 1.037223321 1.029483251 1.025886917 1.036506548 1.000823825 1.023497288 1.005331535 1.009334209 1.030353514 1.042089001 0.990097195 0.989127101 0.934269975 0.985817852 1.041590539 1.071908916 119391561 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.769277692 0.818553598 0.849117935 0.888146767 288869050 ppx Clostridium hathewayi DSM 13479 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hathewayi; 1.204500115 1.155058633 1.180139213 1.193690023 1.204015157 1.155245556 1.216337909 1.216413134 1.181184016 1.187743634 1.185257653 1.213934815 1.155867139 1.128081678 1.17524894 1.160108227 1.167454753 1.161297885 392844399 amyA Rhizobium leguminosarum bv. viciae USDA 2370 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 1.093225313 1.102257144 1.050885988 1.112984515 1.022109793 1.114912728 1.029336718 1.044612659 1.082622826 1.050955405 1.025404074 1.051375535 1.042175003 1.030443647 0.989483092 1.064116997 1.100054773 1.083614601 365867393 badh Streptomyces sp. W007 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 0.986479204 1.017719757 0.946745039 0.979851853 0.97265685 0.976902406 0.968753786 0.974205107 0.994139014 0.998058002 0.977507695 0.959228124 0.946712523 0.948293786 0.888855867 0.936167016 1.01170809 1.038408056 212540702 phospholipase_B_fungi Penicillium marneffei ATCC 18224 virulence degradation NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 0.818491473 0.8563707 0.800927592 0.82746199 0.849799245 0.85663381 0.82812509 0.832782628 0.880281554 77379051 mer uncultured bacterium Metal Homeostasis Mercury Detoxification superkingdom:Bacteria; 1.004146018 0.997566876 1.030105487 1.004862724 0.917317414 0.972363067 0.930394064 1.014166894 0.995591209 0.989250466 0.932175211 0.984130172 0.899726924 0.915375809 0.90361175 0.93372399 0.98197398 1.040850702 189336147 mer Burkholderia multivorans ATCC 17616 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 0.903661642 0.892929703 0.892820585 0.870742139 0.915055483 0.910485903 0.877974327 0.841161695 0.911910159 1.020078483 0.974378962 0.93823255 0.901240413 0.847236914 0.780741475 0.86268554 0.919199748 0.937982338 6457937 amyA Deinococcus radiodurans R1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus radiodurans; 0.911866801 0.979234075 0.894674483 0.911655623 0.88587483 0.922986398 0.935935201 0.947799419 0.889751233 0.899075039 0.884707471 0.890944897 0.851883982 0.830714862 0.803458103 0.883797091 0.876192851 0.897076547 84778373 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.960365628 0.968534011 0.95904047 0.998346637 0.975599628 0.969424185 0.946121633 0.883858906 0.962269835 0.887346534 0.883169803 0.921854341 0.897142709 0.870689109 0.831358752 0.88764702 0.978752238 0.984687106 345869999 nifh Thiorhodococcus drewsii AZ1 Nitrogen Nitrogen fixation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiorhodococcus;species:Thiorhodococcus drewsii; 1.254383006 1.209653234 1.223598992 1.242747173 1.235760033 1.256648787 1.24112143 1.249217185 1.23651965 1.222084185 1.228020473 1.204737743 1.194660628 1.169518695 1.165135898 1.200405757 1.257990713 1.224035512 91978771 tktA Rhodopseudomonas palustris BisB5 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 0.810964495 0.808562201 0.759014099 0.811497062 29652646 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.902281976 0.925394273 0.919212462 0.912436391 0.905528972 0.901952342 0.885442645 0.931630988 0.947162735 0.900102661 0.873507925 0.916105193 0.899101113 0.926765518 0.86185571 0.911416739 0.917066991 0.911882967 227069423 narb uncultured archaeon Nitrogen Assimilatory N reduction NA superkingdom:Archaea; 0.987969185 1.008165193 0.98196999 0.971086687 0.974014966 1.030388525 0.975544335 0.954645843 0.947449754 1.007729519 1.006414798 0.998536918 0.972516768 1.015201872 0.999889724 1.005944798 0.964681086 1.013364142 242208680 cellobiase Postia placenta Mad-698-R Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Postia;species:Postia placenta; 0.873353637 0.82823951 0.854431028 0.896564729 0.859651099 0.839333813 0.887078647 0.865270497 0.879068 0.845754965 0.879585017 0.900088734 0.884867695 0.80764637 0.832061361 0.840236495 0.890410131 0.829666375 209486972 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.334947637 1.296855663 1.292363853 1.339161243 1.303036023 1.340272124 1.280797182 1.305130647 1.302478448 1.268178222 1.275838801 1.289734127 1.2987966 1.250115056 1.273222204 1.293959806 1.358200234 1.264936201 209486940 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.01932099 0.985852021 1.004147292 0.987435598 0.958918946 0.952149692 0.893478191 0.943722898 1.021752738 0.997112352 1.003298303 0.995092659 0.962933561 0.978247111 0.918501377 0.897769997 0.999617331 0.941404165 111026237 amie Rhodococcus jostii RHA1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 1.231847605 1.261609947 1.266137089 1.289915104 1.287905122 1.282857613 1.269178753 1.271690331 1.260217945 1.236224067 1.305562383 1.268884943 1.257900193 1.233974094 1.239197469 1.26108025 1.245650612 1.246023306 298719706 ppx Comamonas testosteroni S44 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 0.834151291 0.809052727 0.873810281 0.823645718 0.831394712 0.811015338 0.80687881 0.831969843 0.843832328 0.827560992 327372658 chitinase Burkholderia gladioli BSR3 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia gladioli; 0.85241436 0.925908381 0.866964509 0.892851729 0.929237635 0.8999987 0.886791647 0.845158799 0.860186952 0.869414838 0.846132273 0.843182556 0.861876786 0.859583568 0.846177815 0.836733272 0.874487606 0.917350272 319950505 glucoamylase Dietzia cinnamea P4 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dietziaceae;genus:Dietzia;species:Dietzia cinnamea; 1.141272865 1.158973878 1.162308384 1.170747023 1.20858257 1.180254363 1.168667651 1.172195362 1.137664912 1.160895427 1.154596058 1.177321895 1.160143693 1.149641859 1.159014187 1.178380182 1.158993673 1.145952098 169276 ligninase Phanerochaete chrysosporium Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Corticiales;family:Corticiaceae;genus:Phanerochaete; 0.983660773 1.013070647 0.934117139 1.030587547 0.89396018 0.974911675 0.877803077 0.960286098 0.928577845 0.958266186 0.863016899 0.940783378 0.851179329 0.877799447 0.896447801 1.026722694 1.015902907 118762452 tfth Sphingomonas wittichii RW1 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 1.137588726 1.103268378 1.10137905 1.153065007 1.121003331 1.137750604 1.160927233 1.179814989 1.126684119 1.148872376 1.11824792 1.146464414 1.113299187 1.120166288 1.068801725 1.125935048 1.132977165 1.133585031 76667575 nifh uncultured nitrogen-fixing bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.924527002 1.003395487 0.974536181 1.059309698 0.995969332 0.977806163 0.974629963 0.979424281 0.96953412 0.980615705 0.913302717 0.992150006 0.997928509 0.967914033 0.933484273 0.950034222 1.004190759 0.98088864 344998109 endoglucanase Streptomyces sp. SirexAA-E Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 0.939183723 0.963652953 0.928862859 0.943563174 0.92130713 1.020133953 0.915561294 0.943844958 0.929216985 0.960577683 0.941928277 0.944680693 0.941562854 0.864278575 0.968654569 0.914209593 0.980281009 77546552 nirb Pelobacter carbinolicus DSM 2380 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Pelobacteraceae;genus:Pelobacter;species:Pelobacter carbinolicus; 0.811935114 0.80519128 0.801771741 0.887105142 0.831445879 0.846531641 0.808436007 0.903059158 0.823638312 0.848203947 0.835001227 0.805718133 261876697 mannanase Selenomonas noxia ATCC 43541 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas noxia; 0.942393071 0.999633481 1.010578991 1.058774268 1.04631172 1.041183528 0.986669345 0.992826137 1.008255565 1.00440395 0.997409784 1.021772268 1.030033858 0.99171783 1.001122778 1.016690723 0.993180562 0.962233341 62003517 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.202609006 1.211484043 1.156955002 1.168900169 1.171174498 1.183998727 1.132062107 1.133001512 1.152408152 1.142154282 1.144226749 1.153495585 1.145500637 1.129070034 1.149951441 1.132469877 1.188468625 1.192319006 270045207 chitinase Serratia odorifera 4Rx13 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia plymuthica; 1.202499016 1.169985997 1.195794182 1.17416235 1.178715469 1.198971913 1.249522997 1.182338425 1.19302468 1.172901831 1.177038062 1.160830788 1.163383471 1.152549412 1.137629579 1.129240528 1.191100235 1.155974867 124266088 chnb Methylibium petroleiphilum PM1 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 1.027104057 1.009261562 1.019258346 1.017747671 0.969088376 0.98427759 0.953637592 0.994922308 1.016329876 1.008573149 0.997918344 1.000300351 0.987780375 1.000382581 0.964453097 0.999051275 1.032702146 1.029653005 89344640 cellobiase Rhodoferax ferrireducens T118 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Albidiferax;species:Albidiferax ferrireducens; 0.822144515 0.791847413 0.786977307 0.801079713 0.794811702 0.811430896 0.795661574 322395742 arsc Methylocystis sp. ATCC 49242 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylocystaceae;genus:Methylocystis; 1.281261109 1.250247938 1.250663639 1.275345487 1.25375755 1.270657694 1.254408469 1.258021937 1.256945488 1.244032276 1.243680509 1.246212833 1.228370872 1.197967152 1.213163458 1.209675412 1.272316428 1.234043531 311742895 gdh Aeromicrobium marinum DSM 15272 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Aeromicrobium;species:Aeromicrobium marinum; 0.846557599 0.798965806 0.75133362 0.888792385 0.867286372 0.889971969 0.855993368 0.832330394 0.824667098 0.847087641 0.809352217 0.806535901 0.853698231 0.830577106 40744228 cutinase Aspergillus nidulans FGSC A4 Carbon Cycling Carbon degradation Cutin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 0.863114638 0.874083935 0.868717452 0.846641031 0.850026583 0.917178028 0.815338235 0.828535319 0.833533057 0.911139096 0.862338733 0.851633382 0.892943447 0.918399686 0.823943702 0.873902145 283815745 poba Spirosoma linguale DSM 74 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Spirosoma;species:Spirosoma linguale; 0.937672979 1.03267879 0.916275034 1.017094238 0.981057757 1.0451393 0.989935815 0.987686302 0.964762248 1.057115106 1.008958641 0.975057157 0.974485928 1.058137389 0.921085411 1.00407261 0.997967425 1.006317553 121495592 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.073399469 1.048414266 1.050200873 1.040299225 1.059361232 1.089527877 1.024658426 0.99468164 1.040709975 1.043161585 1.03772978 1.054407039 1.03638726 1.029640861 0.971023041 1.074261555 1.065089502 1.042667421 139478525 mer uncultured soil bacterium Metal Homeostasis Mercury Detoxification superkingdom:Bacteria; 0.994684854 0.930178164 0.963596231 1.01397529 0.91817527 0.971067992 0.930022055 0.966014365 1.015440654 0.956195052 0.930971608 0.968295793 0.875158058 0.944996028 0.900651816 0.939860768 0.987939126 0.964156768 19421883 rd Desulfitobacterium hafniense Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 0.794294838 0.837066537 0.84420248 0.799982425 0.82337519 0.839428175 0.862725759 0.86888367 0.87414224 0.828204235 0.82482638 0.859140809 363406451 acetylglucosaminidase Tannerella forsythia ATCC 43037 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Tannerella;species:Tannerella forsythia; 0.882194659 0.89930508 1.051404026 1.008433643 0.923191736 0.876209332 1.015769394 1.031026201 1.044889384 0.969809408 0.939519257 0.915015461 0.866169567 0.89630468 0.877533456 0.957626291 1.011670624 0.93980037 350561893 CsoSCA Thioalkalivibrio thiocyanoxidans ARh 4 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio;species:Thioalkalivibrio thiocyanoxidans; 0.88123347 0.871190931 0.898355272 0.898707772 0.862262673 0.851106617 0.878012146 0.856035057 0.821407741 0.840397899 0.914130936 0.918826129 340553643 arsc Collimonas fungivorans Ter331 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Collimonas;species:Collimonas fungivorans; 0.789236645 0.79604902 0.809243658 0.83402586 296020822 amyA Cellulomonas flavigena DSM 20109 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas;species:Cellulomonas flavigena; 1.385188132 1.365006861 1.377360836 1.354552522 1.363993586 1.404254011 1.356280497 1.357164689 1.347109016 1.348534232 1.373632235 1.349912364 1.352016589 1.339522639 1.353966992 1.345792384 1.37251771 1.347297457 6690687 urec Rhodobacter sphaeroides Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter; 0.979199562 0.997095151 0.963188397 1.030930635 0.952853992 0.996454077 0.962303824 0.988277151 0.979105274 0.974473025 0.945780162 0.999402516 0.936470371 0.944872978 0.898436428 0.911270899 0.979669158 1.027709261 226363977 badh Rhodococcus opacus B4 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus opacus; 1.12353043 1.089809769 1.097798819 1.095541733 1.091343345 1.123050403 1.09585674 1.085170705 1.058153841 1.111484782 1.091410183 1.116597105 1.040725258 1.085501776 1.023691319 1.086094813 1.0422434 1.059860229 170700590 bphF1 Burkholderia ambifaria IOP40-10 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ambifaria; 0.88900502 0.914885933 0.882368736 0.909401854 0.89700455 0.85069866 0.904306007 0.876055472 0.912808643 0.896702299 0.908782634 0.918445889 1.072554656 0.833708593 0.795949349 0.866988903 0.915265806 0.918070681 319996148 amyA Anaerolinea thermophila UNI-1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Chloroflexi;class:Anaerolineae;order:Anaerolineales;family:Anaerolineaceae;genus:Anaerolinea;species:Anaerolinea thermophila; 0.946496657 0.966933965 0.91418174 0.929535764 0.870497485 0.938088819 0.897784275 0.851949037 0.961270981 0.918127862 0.872715599 0.943068225 0.889941874 0.93231555 0.880722276 0.923144049 0.948953943 0.987504026 86605045 GAPDH_Calvin Synechococcus sp. JA-3-3Ab Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 1.165371893 1.088780626 1.08860018 1.09131518 1.092547323 1.051109301 1.084853531 1.093934148 1.100238624 1.039270003 1.027375332 1.069594208 1.085564977 0.985700031 1.003749336 1.03133156 1.087735131 1.099581672 345124814 PRK endosymbiont of Tevnia jerichonana (vent Tica) Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;species:endosymbiont of Tevnia jerichonana; 0.834012795 0.868086757 0.899239303 0.857073131 0.876933347 0.940334603 0.876978733 0.896691977 0.922965128 0.898794364 0.859437057 0.879635329 0.860664256 0.829274615 0.824676532 0.805164845 0.839401276 0.850828154 115399748 pec_Cdeg Aspergillus terreus NIH2624 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 0.822189705 0.843134651 0.831742967 0.852844445 0.855969451 0.830514618 0.851618948 0.763177609 0.872674186 145220525 frdA_rTCA Chlorobium phaeovibrioides DSM 265 Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeovibrioides; 0.861881326 0.947538406 0.89499795 0.868757712 0.814380338 0.85226279 0.858764931 0.894026322 0.827759238 0.818851442 0.862615023 0.815096836 0.861090871 0.861252661 0.859159225 0.859406408 240278619 endochitinase Ajellomyces capsulatus H143 Carbon Cycling Carbon degradation Chitin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces capsulatus; 1.248876122 1.254539157 1.204064375 1.227609805 1.199977735 1.269717852 1.202760862 1.228862934 1.190564478 1.217211235 1.20732018 1.222296717 1.194675558 1.18523198 1.195689869 1.180176036 1.248532937 1.198523471 294884043 aoxb bacterium enrichment culture clone aoxauto6_4W Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 0.878834766 0.80784538 0.826566105 0.897678771 0.884440741 0.871045391 0.8194977 0.838422058 0.88684568 0.838425614 0.915911196 0.852265316 0.863483233 0.829499134 0.81206427 0.828855509 0.88774373 0.849480214 112463267 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.067048016 1.036725247 1.027596722 1.044813919 1.010192132 1.02943325 1.023543103 1.047546677 1.036655596 1.040655513 1.024508224 1.049613091 1.02419115 1.01518211 1.018840426 1.022323789 1.064184364 1.03204424 209401858 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.110448523 1.141143749 1.110604819 1.112661354 1.034455774 1.125314048 1.055654149 1.114478571 1.100930751 1.091234072 1.03558257 1.08210495 1.013336573 1.041257517 0.976408482 1.07812067 1.095290769 1.081535696 145607567 pec_Cdeg Magnaporthe oryzae 70-15 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 0.953200832 0.93764735 0.980172694 0.943580043 0.96890766 0.95365389 0.999008514 0.97729519 1.006692148 0.959013629 0.965810581 0.9662497 0.892346711 0.914616266 0.929300734 0.937318155 0.985063038 1.019851139 83016464 actin_Cryptophyta Rhodomonas chrysoidea Other Phylogenetic NA superkingdom:Eukaryota;class:Cryptophyta;order:Pyrenomonadales;family:Pyrenomonadaceae;genus:Rhodomonas; 0.838617115 0.882099956 0.859102543 0.873432046 0.833837831 0.827968948 0.80309965 0.823999876 0.832198107 0.824762715 0.877726551 0.810256666 0.834353098 0.841422743 295680847 cysI Burkholderia sp. CCGE1002 Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 0.772652922 0.814862321 0.835404354 0.841191645 0.786014534 0.810571324 0.834048673 112462199 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.771902289 0.793461775 124516034 sqr Leptospirillum rubarum Sulfur Sulfide Oxidation NA superkingdom:Bacteria;phylum:Nitrospirae;class:Nitrospira;order:Nitrospirales;family:Nitrospiraceae;genus:Leptospirillum; 0.949179631 0.894390648 0.935346191 0.955340843 0.95411826 0.933883569 1.011584253 0.978207303 0.944567804 0.934443947 0.930414328 0.926556438 0.940640994 0.893286568 0.888567801 0.874562809 0.962462132 0.911039947 146404231 rubisco Bradyrhizobium sp. BTAi1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.880186431 0.810162264 0.866227677 0.820489665 0.839836843 0.800987106 0.889516209 0.870158964 299743826 glucoamylase Coprinopsis cinerea okayama7#130 Carbon Cycling Carbon degradation Starch superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 0.925259187 0.92751731 0.879882906 0.906103001 0.845531838 0.855429516 0.892233555 0.844215636 0.869239061 0.820613484 0.875510222 0.880947157 0.918469138 0.88311748 146323424 endochitinase Aspergillus fumigatus Af293 Carbon Cycling Carbon degradation Chitin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Aspergillus fumigatus; 1.220762872 1.193265286 1.181555055 1.222479728 1.150838974 1.162956445 1.149968514 1.217609008 1.210185064 1.178761313 1.163008017 1.187367175 1.158029477 1.128087545 1.169600779 1.163945461 1.197617893 1.176918662 68264127 mer Corynebacterium jeikeium K411 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium jeikeium; 0.975762706 0.938873323 1.000102602 0.998898637 0.959013745 0.982036146 0.961954885 0.972247101 0.99129179 0.990827452 1.013464593 0.977976675 0.930874889 0.916042882 0.906102894 0.899116444 0.953313944 0.909897107 31619067 linb Mycobacterium bovis AF2122/97 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium bovis; 0.768144486 0.88193625 0.82975827 0.869362099 0.89422467 0.824318746 0.845490028 0.842713241 0.837596134 0.825205996 0.852622283 161378932 urec Oceanibulbus indolifex HEL-45 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanibulbus;species:Oceanibulbus indolifex; 0.971223877 0.953149338 0.993234716 0.997556097 0.941624376 0.954121834 0.949223057 0.977805785 0.944618844 0.929705871 0.966465652 0.957951274 0.905073997 0.862464864 0.875832379 0.888215568 0.988328589 0.9610463 288910086 cysI Azospirillum sp. B510 Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum lipoferum; 0.860423299 0.90182264 0.857647406 0.845939087 0.862301022 0.872054644 0.844696069 0.835088302 0.827399345 0.811711335 0.823539673 0.841347795 0.858289533 0.860544747 0.820770986 0.840519958 0.84288008 0.876757692 91789118 TIM Polaromonas sp. JS666 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 0.956205452 0.971235621 0.920240194 0.934841719 0.962240489 0.941615892 0.912152351 0.888659789 0.906461461 0.915090528 0.919432567 0.925528447 0.933944807 0.927097301 0.913485851 0.911478601 0.943541039 1.000743546 319784882 poba Mesorhizobium ciceri biovar biserrulae WSM1271 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium ciceri; 0.987100674 0.963686112 0.931527672 0.92034871 0.856923929 0.895499744 0.870741933 0.853671898 0.96812816 0.927508357 0.938653028 0.912516826 0.815235938 0.863119077 0.85490916 0.850999354 0.967519808 0.938594903 157272192 amyA Actinoplanes sp. SN223/29 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes; 0.937908582 1.080111547 0.890117239 0.887537433 0.888954397 0.918708927 0.900022669 0.885633911 0.890994658 0.909614552 0.908510711 0.897707383 0.905235901 0.882390483 0.807505477 0.894104806 0.894330418 182676943 tktA Beijerinckia indica subsp. indica ATCC 9039 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Beijerinckia;species:Beijerinckia indica; 0.769447776 0.806776648 0.837245147 0.837056558 119673534 mdh_DiC4HB Pyrobaculum islandicum DSM 4184 Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum islandicum; 1.203165679 1.165024379 1.152267086 1.187889131 1.15362835 1.131685641 1.147296966 1.211205937 1.170877573 1.127213903 1.125003979 1.202931625 1.12282007 1.108867161 1.09227299 1.101389043 1.162851113 1.133684633 92441508 amyA Mycobacterium sp. KMS Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 1.086277141 1.045761652 1.079120065 1.076024059 1.005534932 1.072155688 1.041498265 1.019220923 1.067965256 1.045510791 1.066477435 1.029219702 1.02771972 1.02086082 0.974985509 1.030174658 1.063401558 1.049633196 390126549 arsc Sinorhizobium fredii USDA 257 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium fredii; 1.087509391 1.153781673 1.133788382 1.083367532 1.116611481 1.116217519 1.091434095 1.122815696 1.082191138 1.10860614 1.144651896 1.104080813 1.084490691 1.113013001 1.125853895 1.101206258 1.062599437 1.122866939 110632316 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.781510786 0.904713299 0.892158244 0.868506764 0.940329677 0.85439396 0.838641072 0.829908261 0.8620701 0.850494421 0.909068508 0.875455423 0.846445461 0.866065786 0.78851419 0.880382506 190572256 arsc Stenotrophomonas maltophilia K279a Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 1.058630457 0.927573743 0.923003107 0.915284487 0.812880372 0.835770058 0.824149289 0.856365799 0.897613197 0.873772703 0.945122708 0.891033695 0.817534949 0.83207756 0.839845266 0.843733512 0.901797898 0.905820271 299769922 pcag Acinetobacter oleivorans DR1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter oleivorans; 0.748462643 0.84560092 0.76082215 0.800034712 336099758 tktA Oligotropha carboxidovorans OM5 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Oligotropha;species:Oligotropha carboxidovorans; 1.212850134 1.191509558 1.187348264 1.188322921 1.190305887 1.214781574 1.206604357 1.165576563 1.191707435 1.190810003 1.146589383 1.19194178 1.118524298 1.112347721 1.056017338 1.144045991 1.191075633 1.176715006 167647359 cellobiase Caulobacter sp. K31 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 0.846901416 0.937899401 0.923528604 0.880613486 0.892488856 0.905396455 0.95350695 0.88334112 0.932557715 0.949290183 0.925263433 0.926397525 0.91500774 0.849574393 0.902200683 0.871083966 0.975215399 192764478 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.225226931 1.207610287 1.22143039 1.211722918 1.213333121 1.218678779 1.204569157 1.17059512 1.19719815 1.197144328 1.211475686 1.198910603 1.199684241 1.145400202 1.150451493 1.195342027 1.218131192 1.209273024 194292809 norb Cupriavidus taiwanensis Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus; 1.106709372 1.087276799 1.100136032 1.078818711 1.099753062 1.104973164 1.071032018 1.060457072 1.087788948 1.078686373 1.090358001 1.085178874 1.081890181 1.054052131 1.085337993 1.075979393 1.108034393 1.090013132 195952981 AcnA Hydrogenobaculum sp. Y04AAS1 Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Aquificaceae;genus:Hydrogenobaculum; 1.003940627 0.986167926 0.99870999 0.996894858 1.170676047 0.964825792 0.996506403 0.987606309 0.971792497 0.987026028 0.971701712 0.983824258 0.995811032 0.982329712 0.99754172 0.960053456 0.999992747 0.966816745 2765118 mer Thiobacillus sp. Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus; 0.829582606 0.891034267 0.830366414 0.812018139 0.877646981 0.812644219 0.854373087 0.846257977 0.889858374 227882417 glucoamylase Halogeometricum borinquense DSM 11551 Carbon Cycling Carbon degradation Starch superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halogeometricum;species:Halogeometricum borinquense; 1.071186565 0.992811447 0.987752305 1.001470886 0.974377361 0.990734418 0.936490164 0.982632315 1.028913796 1.013227199 1.006117269 1.076593791 0.956750332 0.947745325 0.915178411 0.950355608 1.008848778 0.965684399 254281991 ppk gamma proteobacterium NOR51-B Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 1.134423113 1.124339766 1.072272422 1.140738739 1.094772059 1.148096984 1.099820228 1.105392595 1.106466554 1.094536163 1.085392597 1.104213271 1.085953217 1.071435813 1.074012494 1.097740749 1.138022277 1.093049196 89053136 mer Jannaschia sp. CCS1 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Jannaschia; 1.016573267 1.041647646 0.996566017 1.066246145 1.040532467 1.050933813 1.05982002 1.057705717 1.04903407 1.068416614 1.050255991 1.076423892 1.042569555 0.986600916 1.010810661 1.073172649 1.030104233 1.029756925 83846202 pgk Sulfitobacter sp. EE-36 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 1.006160845 1.004893216 0.924482212 0.959365608 0.945321827 0.969267312 0.923521667 0.939207989 0.91909269 0.962935024 0.910662128 0.931882371 0.875966361 0.938264317 0.854119354 0.867982761 0.964240343 1.008479751 350532587 amyA Vibrio rotiferianus DAT722 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio rotiferianus; 0.929093317 0.929191855 0.921963547 0.991452146 0.913784304 0.923692051 0.897283302 0.918055355 0.943873788 0.897587481 0.878071806 0.921006052 0.879112272 0.853982184 0.868183118 0.847058777 0.920137113 0.891342077 299794603 terc Amycolatopsis mediterranei U32 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 1.345885629 1.365836771 1.355494347 1.298832668 1.328499041 1.395959069 1.318183319 1.34037114 1.31126185 1.322001472 1.310112319 1.310609614 1.315408988 1.327976596 1.329871422 1.329432465 1.319802012 1.364881049 262201363 cysJ Gordonia bronchialis DSM 43247 Sulfur Reduction NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia bronchialis; 0.950926355 0.964681156 0.931676076 0.958140107 0.957122156 0.986144374 0.925895741 1.059748247 0.962489641 0.931222166 0.91552227 0.941823398 0.901398452 0.983974965 0.887475118 0.894252195 0.929252337 0.993415026 18034316 dsra Syntrophobacter wolinii Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophobacteraceae;genus:Syntrophobacter; 1.256580974 1.257404406 1.234628145 1.260864585 1.249734327 1.301106655 1.224522105 1.243256448 1.247073695 1.226930026 1.245280969 1.23867278 1.236098923 1.211472865 1.255109337 1.24518969 1.259070129 1.241804919 325532301 terc Nitrosomonas sp. AL212 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas; 1.194459009 1.131309158 1.149600862 1.187046811 1.137201885 1.191165823 1.167617718 1.166164088 1.194930649 1.159498337 1.111944173 1.124600744 1.12357903 1.122835624 1.11906012 1.117899101 1.209539364 1.164643863 375141867 linb Mycobacterium rhodesiae NBB3 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 0.91923646 0.890570765 0.884445669 0.933249274 0.885029087 0.902896758 0.87754209 0.925645353 0.916190335 0.916671307 0.871989321 0.873140577 0.892000914 0.95121608 0.907801849 0.91470398 0.932256433 0.882742417 260219042 xyla Cronobacter turicensis z3032 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Cronobacter;species:Cronobacter turicensis; 0.85125883 0.870381797 0.855192362 0.888665076 0.806826777 0.843825671 0.811128781 0.835718903 0.923039186 0.886570112 0.802726996 0.851830417 0.841422971 0.853165444 0.826876234 0.834894571 0.854283783 0.875564498 15160399 alginase Agrobacterium tumefaciens str. C58 Carbon Cycling Carbon degradation Alginate superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium fabrum; 1.238200348 1.242679443 1.221281834 1.279088191 1.235916438 1.278138211 1.230557746 1.256784332 1.238790305 1.232560917 1.218846444 1.235916263 1.252042905 1.230047541 1.205326508 1.281305819 1.291850796 1.221889879 157679439 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.820531728 0.810155257 0.859056026 0.807699547 0.848081418 0.894229402 0.874125753 0.860889206 0.798484861 0.841742336 0.84181582 0.786812664 0.829348822 0.81569526 78778252 soxY Thiomicrospira denitrificans ATCC 33889 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Sulfurimonas;species:Sulfurimonas denitrificans; 1.038663799 0.928376418 0.937253521 1.010840343 0.976959068 0.935192176 0.96662958 0.977233444 0.980856646 0.920779105 0.947005392 0.985957765 0.980428079 0.884096255 0.896181005 0.92582711 0.991757016 0.899133343 28556672 catechol_b uncultured bacterium Organic Remediation Aromatics Other aromatics superkingdom:Bacteria; 0.90392324 0.941942711 0.895927881 0.897752636 0.821504236 0.913669864 0.83361873 0.888778131 0.892724945 0.896832972 0.84344842 0.865004047 0.795855626 0.860355651 0.86414897 0.900625631 0.941013542 383452553 alkh Corallococcus coralloides DSM 2259 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Corallococcus;species:Corallococcus coralloides; 1.062504952 1.063303576 1.066081444 1.068217943 1.052278885 1.057174911 1.025051652 1.038629518 1.028918927 1.03916188 1.046673143 1.043409234 1.057630016 0.987441991 1.018390498 1.024378521 1.076603304 1.017671758 269979711 fthfs uncultured rumen bacterium Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria; 0.852998475 0.854579574 0.862193236 0.85479114 0.859867178 0.881192078 0.842327549 0.876988421 0.806707162 0.818156003 0.849691227 0.873356727 111019375 one_ring_12diox Rhodococcus sp. RHA1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 0.991200621 1.046147444 1.013927483 0.932320815 0.993534587 0.970522934 0.957537713 0.91973325 1.002706978 0.956762119 1.031013097 0.938709258 0.904081995 0.85871465 0.837098473 0.869566404 1.019967296 0.959191679 229469654 amyA Exiguobacterium sp. AT1b Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium; 1.075507693 1.201500569 0.997306377 1.130270299 1.133458711 1.196166436 1.137407247 1.014563433 1.08806647 1.105006545 1.145991102 1.121702787 1.118723403 1.023695454 0.946788945 1.063075238 1.152015532 1.05177594 288927618 amyA Prevotella sp. oral taxon 317 str. F0108 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella sp. oral taxon 317; 1.16129001 1.096822448 1.14326378 1.161528294 1.074527913 1.100545731 1.088205202 1.114214005 1.147948491 1.104203673 1.096807725 1.120633325 1.093497359 1.067943448 1.06666029 1.103483699 1.15317178 1.113959612 206686490 rd Rhodobacterales bacterium Y4I Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 0.822341407 0.805882292 0.831908583 0.847740797 0.789956512 113196156 chitinase Serratia marcescens Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia; 0.957946287 0.892223137 0.908330239 0.877589682 0.851183059 0.981853963 0.913103525 0.946386426 1.01929885 0.965742269 0.905374138 0.858535208 0.911358765 0.915843301 0.876006185 0.884812568 82719311 mer Shewanella sp. W3-18-1 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella; 0.933712136 0.878621124 0.872174875 0.865494972 0.907628129 0.84736639 0.893225967 0.871373833 0.86388812 0.826957816 0.875635477 0.799829888 0.828252046 0.916223967 0.9274855 363714233 mdlb Acetobacteraceae bacterium AT-5844 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae; 0.865744841 0.789974636 0.789872504 0.86190308 0.847468631 0.804830598 0.868497863 0.839628487 0.833406834 0.916695628 0.889175932 0.797447307 0.825000289 0.854621436 302419501 exopolygalacturonase_fungi Verticillium albo-atrum VaMs.102 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticilium;species:Verticillium albo-atrum; 0.872532923 0.86774475 0.908247577 0.86177349 0.835420543 0.850047722 0.892104928 0.826865391 0.851445074 0.873072926 0.884535334 223954132 dsra uncultured bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.1853674 1.272099672 1.12259028 1.216023499 1.16699721 1.173330438 1.148281815 1.134622577 1.169495105 1.14146784 1.203378096 1.166910584 1.141703415 1.133290937 1.12894244 1.109332843 1.161431712 1.149779439 350559642 fccab Thioalkalivibrio thiocyanoxidans ARh 4 Sulfur Sulfide Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio;species:Thioalkalivibrio thiocyanoxidans; 0.790765474 0.807007575 0.80718057 0.774103585 0.795043612 116096219 ppx Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Leuconostocaceae;genus:Leuconostoc;species:Leuconostoc mesenteroides; 0.923807076 0.943025392 0.943838417 0.969119692 0.900048657 0.961509088 0.904633295 0.955312351 0.926757376 0.934536117 0.842237042 0.932176503 0.872848395 0.905349074 0.859716793 0.893024016 0.92895418 0.977555077 108764850 dmdA Rubrobacter xylanophilus DSM 9941 Sulfur DMSP degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Rubrobacterales;family:Rubrobacteraceae;genus:Rubrobacter;species:Rubrobacter xylanophilus; 0.870458884 0.865141064 0.939425335 0.850327192 0.82928172 0.900807395 0.870050481 0.887951317 0.883109118 0.848163064 0.77440152 0.911211398 0.809193256 0.884120764 0.909781608 0.947439318 37199901 Sir Vibrio vulnificus YJ016 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio vulnificus; 0.905169125 0.840192177 0.846389518 0.884031765 0.941997312 0.940738002 0.979627951 0.859752308 0.866000307 0.924572226 0.988171299 0.900911277 0.942757305 0.947695311 0.834378071 0.818165604 0.899776167 0.847342964 356690818 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.869199853 0.828247925 0.80986653 0.843590707 1.02689537 0.878603396 0.815945644 0.846961586 0.843879835 0.889083447 0.878820142 0.900527266 0.824989492 0.819389594 0.79882183 0.856475364 0.880427416 269796436 glucoamylase Sanguibacter keddieii DSM 10542 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Sanguibacteraceae;genus:Sanguibacter;species:Sanguibacter keddieii; 1.531354324 1.507808096 1.476585948 1.492116084 1.447153344 1.535292771 1.469288709 1.480197527 1.459528235 1.463398283 1.457059205 1.484647072 1.417002259 1.440009606 1.392348436 1.445866966 1.502162491 1.474990768 77378649 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.848920723 0.841685304 0.893669531 0.84799163 171679840 endochitinase Podospora anserina S mat+ Carbon Cycling Carbon degradation Chitin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Lasiosphaeriaceae;genus:Podospora;species:Podospora anserina; 0.943848653 0.912005584 0.96038183 1.00828346 0.965510673 0.926251477 0.969871275 0.989850139 0.978115242 0.929610545 0.871488981 0.923594632 0.915471407 0.876630756 0.859017211 0.870828978 0.962554797 0.958068252 325497736 CsoS1_CcmK Escherichia fergusonii ECD227 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia fergusonii; 0.788427927 0.985479896 0.839671092 0.87774134 0.78178288 0.840504883 0.831419232 0.836504715 407252212 cmci Alcanivorax dieselolei B5 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax;species:Alcanivorax dieselolei; 0.783720929 0.917459814 357941878 merb Burkholderia sp. YI23 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 0.998784419 1.01992632 0.932632475 1.041325965 0.955408901 1.002715463 0.941413303 0.984533587 0.995864275 0.966835552 0.979571797 0.993958251 0.929197701 0.927603581 0.922949278 0.930341978 0.999678726 1.003945562 77165857 ppx Nitrosococcus oceani ATCC 19707 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Nitrosococcus;species:Nitrosococcus oceani; 0.833954117 0.825039726 0.788223653 0.834720065 0.859413604 0.821866513 0.78573539 0.843711122 0.816375657 0.817388274 0.801067412 0.861119892 226355444 amyA Deinococcus deserti VCD115 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus deserti; 1.11498667 1.056566709 1.071561245 1.077178831 1.068231899 1.083893992 1.05182826 1.054852188 1.071696732 1.074321805 1.068459147 1.069197463 1.015143321 0.983081808 0.964499195 1.044715096 1.049378075 1.055239757 146335703 aoxb Agrobacterium sp. C13 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium; 0.872136681 0.863038071 0.844673635 0.805515687 0.842469445 0.865190885 0.849816144 0.848297698 0.861722999 0.833413665 119116961 alpha_tubulin_Oxymonads Saccinobaculus environmental sample Other Phylogenetic NA superkingdom:Eukaryota;order:Oxymonadida;family:Saccinobaculidae;genus:Saccinobaculus; 1.202217799 1.188175655 1.173015294 1.175184202 1.167770179 1.195302426 1.156014634 1.155846136 1.181534658 1.191804752 1.188250899 1.17174776 1.134195077 1.136934211 1.105233178 1.152707039 1.204803022 1.205294232 302350999 ppk sediment metagenome Phosphorus Polyphosphate synthesis NA 0.80114056 0.813718037 0.820315439 0.835140776 0.812542248 0.828780589 0.801294209 0.814219135 359767191 amyA Gordonia polyisoprenivorans NBRC 16320 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia polyisoprenivorans; 0.76482752 0.819516112 291152477 arsc Pantoea ananatis LMG 20103 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea;species:Pantoea ananatis; 0.954264183 0.946816864 0.938965711 0.94640845 0.936910812 0.945534133 0.93832932 0.909774595 0.933632105 0.978491149 0.910500421 0.927396122 0.930991395 0.907183009 0.890530296 0.931272516 0.94701057 0.966593637 393180122 nhh Rhizobium leguminosarum bv. trifolii WSM2297 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 1.063565135 1.034509452 1.035493246 1.053266592 1.051426157 1.070318729 1.081831484 1.055108906 1.055915886 1.118022264 1.072555943 1.051601159 1.034117899 1.081672928 1.004601635 1.039750905 1.039687967 1.049440946 312959580 poba Pseudomonas fluorescens WH6 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 1.228432445 1.193517535 1.202770467 1.213620058 1.193250742 1.22581216 1.175790001 1.185188909 1.193039115 1.162088318 1.174813153 1.201265234 1.222373039 1.145706305 1.169055169 1.160405759 1.250036801 1.16986856 357045843 rgl Paraprevotella clara YIT 11840 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Paraprevotella;species:Paraprevotella clara; 0.939851624 1.004433354 0.963296711 1.008845394 0.977250241 1.001307643 1.017953359 0.97315211 1.015504389 0.981784097 0.930750479 1.016407293 0.979465511 0.945400685 0.956507693 0.952904291 0.977808789 0.946990181 169831034 codh Candidatus Desulforudis audaxviator MP104C Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Candidatus Desulforudis;species:Candidatus Desulforudis audaxviator; 1.005124982 0.993067972 0.979579721 1.042736553 0.959916701 0.974315247 0.953147968 0.953737445 1.006038711 0.95638189 0.954714441 0.965380656 0.871690279 0.930205303 0.926015959 0.882186945 1.006065707 0.99236988 83746982 mdld Ralstonia solanacearum UW551 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 1.062026805 1.10498237 1.007759848 1.065858711 1.058340429 1.092278477 1.029515773 1.051704266 1.045289266 1.053138674 1.038496241 1.03871268 1.043424397 1.021732145 1.054898132 1.021863895 1.094365373 1.10480728 337273302 nifh Acetonema longum DSM 6540 Nitrogen Nitrogen fixation NA superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Acetonema;species:Acetonema longum; 0.84378933 0.880348543 0.933502743 0.811098288 0.864474846 0.812860294 0.887376981 0.823490332 0.861041436 0.926869246 0.869193113 0.852452696 0.856223998 0.909332676 26278902 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.069673197 1.054841828 1.04921253 1.037905055 1.016002432 1.013535575 1.000140106 1.046128346 1.03328209 1.040949013 1.031751138 1.057101635 1.027565221 1.041054041 0.991335974 1.014277995 1.060259842 1.049020913 182382484 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.996497721 1.004305724 0.966278218 0.991170775 0.987579873 0.990753535 0.936169836 0.948775148 0.975789838 0.986981468 0.985858172 0.963205168 0.972190099 0.96550524 0.962088678 0.960723582 1.007895388 0.994268273 291513633 heparinase Alistipes shahii WAL 8301 Carbon Cycling Carbon degradation Heparin superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Rikenellaceae;genus:Alistipes;species:Alistipes shahii; 1.052095088 1.057992058 1.088807709 1.0732677 1.060303193 1.060272595 1.046192554 1.058304118 1.105725843 1.066522197 1.055902476 1.064282779 1.060062618 1.005661248 1.021123468 1.008891028 1.114459954 1.045148252 348690556 rgl Phytophthora sojae Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;order:Peronosporales;genus:Phytophthora; 0.884786757 0.832545582 0.827044185 0.881082602 0.96434298 0.861078186 0.924136196 0.881201121 0.880537083 0.880322289 0.889684465 0.859414167 0.817731406 0.833371661 0.822387448 269838062 arsm Sphaerobacter thermophilus DSM 20745 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Chloroflexi;class:Thermomicrobia;order:Sphaerobacterales;family:Sphaerobacteraceae;genus:Sphaerobacter;species:Sphaerobacter thermophilus; 0.928125646 0.966129182 0.98752131 0.963517253 0.962233302 0.953414781 0.993919328 0.940578572 0.943254904 0.906115231 1.003321083 0.925559509 0.861710344 0.947814463 0.970243266 0.909658737 0.917636224 158329924 pcpe Azorhizobium caulinodans ORS 571 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Azorhizobium;species:Azorhizobium caulinodans; 0.945828526 0.93798798 0.945659477 0.920991702 0.964517629 0.944429049 0.959290092 0.954919814 0.914276388 0.935775526 0.936191385 0.947759486 0.929393765 0.895675252 0.854184379 0.902862709 0.93751826 0.91852079 254000265 amyA Methylovorus glucosetrophus SIP3-4 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Methylophilales;family:Methylophilaceae;genus:Methylovorus;species:Methylovorus glucosotrophus; 1.182678846 1.149349148 1.153451099 1.187788298 1.15597102 1.181314681 1.165970899 1.153539237 1.1548836 1.110931588 1.13375971 1.143308438 1.136782568 1.11444769 1.115321169 1.132156955 1.183787545 1.148202786 212711351 mdlc Providencia alcalifaciens DSM 30120 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia alcalifaciens; 0.910277435 0.918608185 0.890535868 0.891895955 0.866667924 0.868766989 0.890662702 0.856098077 0.867319471 0.854456035 0.864652514 0.874401499 0.862734657 0.848725244 0.840171087 0.839266806 0.888429961 0.897407474 189340204 AcnA Chlorobium limicola DSM 245 Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium limicola; 1.279644492 1.274116201 1.26001239 1.296341097 1.275905526 1.252685591 1.285441886 1.313543822 1.287637948 1.258941778 1.257885537 1.298851798 1.231750011 1.23437696 1.274107193 1.252606908 1.235459983 1.243663149 333743526 proO Delftia sp. Cs1-4 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia; 0.908433117 0.908213488 0.905200637 0.993519857 0.935637573 0.847407437 0.90070946 0.895318171 0.946808913 0.907131299 0.89442999 0.927614185 0.861859997 0.836020427 0.847640101 0.890256987 0.940043592 0.936866977 17223654 tutfdg Azoarcus sp. T Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 1.133621746 1.05477826 1.06654965 1.106356946 1.088772296 1.114430326 1.019043155 1.126457487 1.104809995 1.087680023 1.078555607 1.035857776 1.064947225 1.063211446 1.038559341 1.090848064 1.070763458 1.070473277 110681866 endoglucanase Rhizobium leguminosarum bv. trifolii Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 0.815280743 0.894227619 0.838623948 0.858231292 0.811192625 0.892752831 0.807067353 0.811289152 0.932782312 0.805223479 0.797846963 0.910415096 0.880592278 0.834133264 0.981356006 0.981199673 209401786 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.081323037 1.047881343 1.101982224 1.037386471 1.064730018 1.117978659 1.060266132 1.068503494 1.055026566 1.052081478 1.046991468 1.031669733 1.053836384 1.043961014 1.063323382 1.024328522 1.092396081 1.082810915 14027653 ppx Mesorhizobium loti MAFF303099 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 1.259107107 1.25602056 1.238912167 1.232414707 1.252291555 1.281053521 1.236130078 1.228728713 1.227892008 1.239290205 1.244366853 1.23298137 1.221423405 1.199418952 1.184850011 1.225382161 1.259540481 1.245211578 70672897 nifh uncultured nitrogen-fixing bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.977837278 0.942576291 0.965033273 0.990843796 1.021066212 0.976077666 0.956325795 0.968351553 0.975140415 0.97863829 0.969315115 0.992606918 0.964707767 0.919518497 0.924387651 0.901356186 0.972273447 0.937645847 334687508 catb Microlunatus phosphovorus NM-1 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Microlunatus;species:Microlunatus phosphovorus; 0.910352838 0.939669815 0.945479526 0.897541792 0.863394203 0.923362386 0.933664951 0.930156061 0.963884069 0.905469494 1.004734098 0.877933798 0.898565821 0.87593303 0.89798824 0.881747808 0.892964229 284029980 hyaluronidase Kribbella flavida DSM 17836 Carbon Cycling Carbon degradation hyaluronic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Kribbella;species:Kribbella flavida; 0.886212778 0.859608219 0.847361144 0.822144924 0.84334629 0.889852946 0.807605238 0.798736088 0.825936679 0.912102518 0.884013482 0.849561457 0.86614184 0.896049666 0.811624675 0.84079204 0.812546343 0.873223112 334887195 cda Haloplasma contractile SSD-17B Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;order:Haloplasmatales;family:Haloplasmataceae;genus:Haloplasma;species:Haloplasma contractile; 0.840140334 0.805436185 0.787349203 0.789285884 0.846729215 0.821541509 164456128 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 1.247946559 1.193723279 1.220274944 1.2337661 1.19826998 1.187039612 1.192555723 1.219812112 1.230252217 1.178157211 1.210634613 1.241689369 1.180238144 1.139791439 1.161003647 1.186409235 1.250111832 1.160310528 317464593 cysJ Pseudoxanthomonas suwonensis 11-1 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Pseudoxanthomonas;species:Pseudoxanthomonas suwonensis; 1.097451506 1.06413028 1.062966274 1.066745501 1.067672663 1.10101901 1.028682153 1.041263416 1.05578392 1.092016429 1.083358749 1.067076721 1.036702458 1.029934292 1.094780253 1.051073182 1.093143468 1.067444704 89056319 GAPDH_Calvin Jannaschia sp. CCS1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Jannaschia; 1.022798465 1.030161386 0.969777577 1.017148554 0.984852625 0.997795098 1.032739278 1.019078717 1.02046894 1.028253929 1.005615756 1.020710803 0.966643771 1.021935129 1.011367322 1.004354135 1.012567 1.072413482 315497676 xylanase Asticcacaulis excentricus CB 48 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis excentricus; 1.087959318 1.029427709 1.061805994 1.036101647 0.979207185 1.028009901 0.980629294 1.024266523 1.028854675 1.033833209 0.991860813 1.012336784 0.971739636 0.996797732 0.95392949 0.994306011 1.028299138 1.029268066 363406122 cda Tannerella forsythia ATCC 43037 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Tannerella;species:Tannerella forsythia; 0.887922231 0.929664043 0.849062867 0.872796729 0.86317237 0.93851266 0.886662994 0.890329698 0.887994472 0.908805143 0.924597148 0.899942263 0.881136118 0.898980736 0.878355013 0.961399525 0.923291123 15157719 pcpe Agrobacterium tumefaciens str. C58 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 1.328888728 1.295189534 1.323365986 1.343440988 1.320851377 1.331725861 1.338145492 1.353453657 1.320595041 1.299032484 1.312486078 1.350711929 1.302165993 1.273022129 1.299821464 1.309639154 1.319785845 1.295047366 74058162 CsoSCA Thiobacillus denitrificans ATCC 25259 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus;species:Thiobacillus denitrificans; 1.066377525 1.03542214 1.011126755 1.006963491 1.034613267 0.99407468 1.007109763 1.019639598 1.045240231 1.018116996 0.986111078 1.009390189 0.983295223 0.994735681 1.057494607 1.073163766 388567244 linb Hydrogenophaga sp. PBC Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Hydrogenophaga; 1.336754155 1.34425566 1.336287388 1.271968323 1.28673139 1.333417915 1.262312935 1.26456027 1.279763493 1.323186294 1.320670758 1.292240666 1.254808379 1.308587119 1.246492654 1.298656959 1.30728304 1.335035252 29466086 norb uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.970799853 0.971610711 0.87046489 0.980683673 0.916591081 0.956508098 0.908507417 0.934458297 0.968203704 0.932958719 0.876250966 0.941801121 0.927614501 0.907131184 0.898345977 0.936921726 0.986776927 0.981469347 319945535 nosz Lautropia mirabilis ATCC 51599 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Lautropia;species:Lautropia mirabilis; 0.833762532 0.792279906 0.880836334 0.817230802 0.803499427 0.832044104 0.870771964 0.840655795 0.839982427 0.838393987 0.87287642 0.81770827 399539379 mhpa Amycolatopsis mediterranei S699 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 0.859936892 0.913084137 0.868908433 0.925814021 0.931191481 0.938767847 0.918870918 0.843799962 0.853533585 0.93263021 0.891160211 0.891910249 0.888794015 0.916555281 0.907929258 0.923326223 0.900129581 0.926266053 374607976 cutinase Mycobacterium tusciae JS617 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tusciae; 1.060548794 0.997969057 1.117932453 1.021414653 1.054260043 1.056801538 1.065136699 1.077210838 1.022970413 1.087033516 1.072444541 1.032501834 1.035869567 1.031590929 0.977725008 1.000895022 1.059004809 1.045348784 359146676 vgb Streptomyces sp. S4 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 1.273019041 1.245860675 1.247960332 1.258567367 1.239325606 1.261193193 1.219784862 1.234850585 1.28546925 1.236224001 1.200474933 1.24038402 1.20688749 1.202621456 1.236542976 1.24877717 1.260188875 1.227604391 260223621 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.944627817 0.94798622 0.954558496 0.964713991 0.973558889 0.961826401 1.002099221 0.968772268 0.924305945 0.950451692 0.939244874 0.94865767 0.912656322 0.928240382 0.869512658 0.894053402 0.941549633 0.969859635 304328243 xylanase Pediococcus acidilactici DSM 20284 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Pediococcus;species:Pediococcus acidilactici; 1.044333797 1.03245902 1.020310428 1.048771642 0.978136331 1.034992027 1.013474897 1.021978059 1.035935953 1.017829184 0.993770875 1.033699228 0.975143219 1.005530408 0.979595577 1.042706861 1.056945462 1.025633042 111022350 terc Rhodococcus sp. RHA1 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 0.973490022 0.995787358 0.966733176 0.98931668 0.962733047 0.965513547 0.926382418 0.947949179 0.96995796 0.942509462 0.885850017 0.944413491 0.928594375 0.912927111 0.83674651 0.900034399 0.985617729 0.976476654 387939567 acetylglucosaminidase Cellvibrio sp. BR Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio; 0.823728216 0.823115722 0.826127228 0.852822921 0.794461281 0.819081258 0.814950285 0.894837037 0.818659811 0.828826954 0.834296796 337268834 exaa(moxf) Mesorhizobium opportunistum WSM2075 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium opportunistum; 0.962620825 0.934179932 0.985049284 0.975931956 0.913608602 0.964392181 0.923574086 0.871434891 0.935887897 0.950612772 0.91964063 0.949298234 0.92381939 0.952901317 0.978249249 0.947204379 0.98964319 0.963186801 259164816 amyA Corynebacterium efficiens YS-314 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium efficiens; 0.998456866 0.988443117 0.986666754 0.93638432 0.902492634 1.004869353 0.878915878 0.952134581 0.978827715 0.996911877 0.955350086 0.933831569 0.868600755 0.928181166 0.893168197 0.916357431 1.075452478 1.019767098 163745832 fthfs Oceanibulbus indolifex HEL-45 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanibulbus;species:Oceanibulbus indolifex; 0.891657929 0.880908325 0.909122127 0.92153116 0.928010131 0.889097505 0.919822209 0.903375139 0.922208923 0.906868476 0.916026578 0.926923068 0.88413565 0.874274286 0.839343061 0.863339176 0.934256645 0.886031928 259427865 mdlb Nostoc sp. PCC 7120 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc; 0.875063889 0.85139974 0.939790599 0.864252608 0.855767932 0.880726405 0.831903819 0.824573742 0.8382119 0.905256572 0.866868953 0.857869261 0.813489072 0.833565568 0.850064543 56312056 tktA Aromatoleum aromaticum EbN1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 1.09185413 1.079334375 1.076171514 1.110655812 1.073400432 1.071418215 1.075402355 1.073016279 1.073889971 1.086287035 1.085643212 1.077901592 1.067709783 1.012738021 1.011485507 1.044037311 1.111359971 1.079153792 170742169 ara Methylobacterium sp. 4-46 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 1.393551275 1.384100384 1.36548555 1.384001028 1.359083263 1.394181632 1.350019711 1.39151296 1.35500744 1.359527099 1.357428097 1.384727328 1.348045079 1.342606795 1.346334555 1.351341272 1.37605361 1.348608241 1526617 bphb Pseudomonas putida Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.776450178 0.796684032 0.771100584 0.836098495 359255334 pgk Mesorhizobium alhagi CCNWXJ12-2 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium alhagi; 0.997758388 0.974985698 1.01402395 0.976830519 0.961784393 0.982102308 0.936596658 1.002731069 0.992630471 0.962298363 0.955356556 0.963755834 0.935981823 0.918865997 0.961825406 0.909415544 0.991391536 0.989428897 373954711 xyla Mucilaginibacter paludis DSM 18603 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Mucilaginibacter;species:Mucilaginibacter paludis; 0.821880565 0.894214148 0.854299609 0.862771874 0.900814783 0.874560473 0.780283388 0.837758534 0.888553777 0.852077411 0.841218658 0.885134026 0.863271806 0.815160457 0.838126184 0.85655774 0.881816246 323382198 bphF1 Burkholderia sp. CCGE1001 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 1.033541613 1.00946213 1.032020836 1.016330203 1.030302818 1.040325032 1.051356305 1.059675866 1.03396235 1.00214922 1.012460889 1.01278733 0.99854339 0.977943303 0.98244204 0.967805915 1.047404813 1.020756537 390568536 mdla Burkholderia terrae BS001 Organic Remediation Aromatics Aromatic alpha hydroxy acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia terrae; 0.905096405 0.837048001 0.873122719 0.881301897 0.910456044 0.886258233 0.931780201 0.901657977 0.878498251 0.860774474 0.893908225 0.849334135 0.875035 0.825745194 0.865737944 0.878839357 0.920537995 157912047 tktA Dinoroseobacter shibae DFL 12 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 1.160162921 1.173681769 1.173119826 1.151610576 1.194823729 1.182507416 1.191797276 1.135454763 1.14594386 1.163830222 1.136328585 1.171482884 1.143766277 1.134779383 1.166693339 1.17446029 1.15020693 1.177559011 226319417 mer Deinococcus deserti VCD115 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus deserti; 0.843729458 0.838362313 0.904786596 0.898545596 0.903313207 0.905700656 0.853165753 0.850446458 0.805633219 0.933228791 0.914370007 0.885246685 0.859437552 0.910485182 0.85543633 0.848756121 0.875141607 0.87364414 340554237 pgk Collimonas fungivorans Ter331 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Collimonas;species:Collimonas fungivorans; 0.76678391 0.829857252 0.789456011 0.785982346 0.850562508 0.825231706 0.850003728 156523001 aps_apra uncultured bacterium Sulfur adenylylsulfate reductase NA superkingdom:Bacteria; 0.858232428 0.812635405 0.814406495 0.845432757 0.805988287 302438557 adpb Streptomyces sp. AA4 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 0.90210435 0.907647138 0.824073715 0.8571745 0.841805575 0.834366724 0.856136091 0.88761069 0.815850446 0.840425071 0.950590995 210065277 bph Penicillium marneffei ATCC 18224 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 1.068945936 1.048908135 1.033400563 1.061675667 1.035900968 1.013865507 1.047404646 1.031063292 1.043623636 1.038196095 1.077203676 1.051670156 1.034934327 1.041224367 1.004855104 1.062592746 1.054430334 1.028521967 90421109 arylest Aurantimonas sp. SI85-9A1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Aurantimonas;species:Aurantimonas manganoxydans; 1.221089781 1.19755423 1.167446628 1.202891981 1.129571611 1.161798057 1.125418181 1.199181568 1.189169563 1.153315546 1.147784237 1.195164062 1.106344421 1.109042155 1.092138898 1.104691146 1.165539081 1.139248611 261357289 alpha_galactosidase_fungi Verticillium albo-atrum VaMs.102 Carbon Cycling Carbon degradation Other superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticillium;species:Verticillium alfalfae; 0.873659423 0.938565644 0.9011097 0.864780647 0.952989571 0.852745822 0.818253331 0.903380384 0.915372754 0.93016031 0.902895991 0.869382101 0.864109901 0.878109871 0.872393469 0.882168007 0.935375534 314967426 amyA Propionibacterium acnes HL037PA1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium;species:Propionibacterium acnes; 0.948777841 0.915342383 0.895823355 0.924251543 0.972820461 0.907120088 0.871470652 0.87889903 0.944900669 0.903632029 0.936378044 0.937904396 0.915189026 0.892491084 0.880681585 0.939233694 0.928002196 0.908438087 381201525 terc Sphingobium yanoikuyae XLDN2-5 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium;species:Sphingobium yanoikuyae; 1.039574342 0.974292628 1.011544731 1.043696282 1.001772661 0.98914149 0.986875372 1.025592678 1.030937247 0.96736226 0.964219629 1.020488292 0.994228276 0.906693322 0.966164442 0.922423221 1.047042083 239937278 poba Paenibacillus sp. JJ-1b Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 1.141576626 1.044840083 1.070430281 1.084730456 1.035751071 1.016225301 1.066880385 1.084994009 1.072689657 1.083274567 1.054614202 1.058916397 0.998003151 1.015089183 0.994368974 1.034274728 1.050909874 1.066335721 302418426 exoglucanase Verticillium albo-atrum VaMs.102 Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticillium;species:Verticillium alfalfae; 0.971218055 0.990141722 1.013622809 0.985150596 0.998547483 0.971372356 1.002612159 0.961665308 0.952951761 0.921470023 0.94232691 1.027669922 0.920005198 1.007768343 291444923 cellobiase Streptomyces roseosporus NRRL 15998 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces filamentosus; 0.871300096 0.857925027 0.820021933 0.846503542 0.811093538 0.831685027 0.836284566 0.843258022 0.815945665 0.825608458 0.866457305 209530632 endoglucanase Gluconacetobacter diazotrophicus PAl 5 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter diazotrophicus; 1.291516717 1.250688052 1.283806438 1.326773815 1.290315293 1.307321372 1.27127311 1.316403985 1.295940421 1.254978511 1.287657445 1.296567207 1.277325381 1.226164578 1.256430441 1.26324933 1.302447233 1.241868394 28867630 chitinase Pseudomonas syringae pv. tomato str. DC3000 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 1.042497455 1.037031447 1.067138413 1.111775707 1.047710957 1.074842662 1.028016609 1.051951964 1.130247596 1.067921537 1.051975031 1.077630732 1.04309217 1.036423782 1.039358817 1.059530406 1.088609641 1.058616936 169793642 napa uncultured bacterium Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria; 1.004300314 1.009319154 0.973209674 1.000271052 0.942837197 0.983331523 0.982037624 1.003802517 0.997187728 1.001875433 0.971961277 1.038280289 0.938264096 0.957273796 0.938556085 0.968783168 1.016531686 0.98052472 325922367 acetylglucosaminidase Xanthomonas gardneri ATCC 19865 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas gardneri; 0.923020122 1.004862552 0.907580723 0.967354983 0.941804948 0.927087136 0.888919802 0.93501122 0.94049019 0.90846378 0.911566201 0.940757752 0.889000724 0.877298269 0.866596834 0.946711638 0.944566807 0.975896718 71846611 quinoline Dechloromonas aromatica RCB Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Dechloromonas;species:Dechloromonas aromatica; 0.834568626 0.793845205 0.823411255 0.87006595 0.803624097 0.834389123 0.843369018 0.848484455 0.887516 0.816944656 0.842129945 0.875762582 0.884659004 95113224 ppx Pseudomonas Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae; 0.936491267 0.937944382 0.831764674 0.92775212 0.903772831 0.906476387 0.875578134 0.853370897 0.917828881 0.910146054 0.886732647 0.906471101 0.914312893 0.864330044 0.853608233 0.927419598 0.915947211 86606277 CsoS1_CcmK Synechococcus sp. JA-3-3Ab Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 1.011309618 1.040351851 1.015820672 1.045613554 1.052299083 1.03094668 1.029011449 1.014273634 0.999386908 1.023075193 1.027339482 1.03046633 1.020617785 1.023949109 1.075871792 1.032527182 1.027655786 0.998194063 283786682 cysJ Citrobacter rodentium ICC168 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter rodentium; 0.853157522 0.836718752 0.823464188 0.838335303 0.811120349 0.804049478 0.801227937 0.816873169 0.857497941 0.840966475 0.869535089 409408212 mdlc Herbaspirillum sp. GW103 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herbaspirillum; 0.822547447 0.830180975 0.821575857 0.843553257 169861071 chitin_deacetylase_fungi Coprinopsis cinerea okayama7#130 Carbon Cycling Carbon degradation Chitin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 0.869454629 0.859190326 0.802727699 0.846379222 0.86980812 0.846081042 0.831418208 0.837533632 0.865570956 0.845542602 148255520 nira Bradyrhizobium sp. BTAi1 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 1.200509187 1.229678961 1.186475817 1.16044405 1.190442417 1.21023819 1.148740531 1.129712405 1.189595782 1.185647712 1.207114152 1.184926901 1.16367201 1.181044028 1.138160794 1.195266661 1.178401107 1.186279165 118472095 linb Mycobacterium smegmatis str. MC2 155 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 1.426092975 1.411712528 1.394652714 1.417058647 1.3774462 1.391870865 1.365990386 1.384231588 1.384670215 1.377954689 1.380889825 1.408046014 1.363686049 1.359947969 1.348381906 1.368771456 1.388924563 1.371260373 116634749 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.791895598 0.811198537 159028642 mer Microcystis aeruginosa PCC 7806 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Microcystis;species:Microcystis aeruginosa; 0.975365168 0.890486917 0.883173653 0.988767409 0.877197235 0.930361187 0.833263243 0.909529524 0.967776667 0.913790816 0.903482164 0.911678428 0.884145338 0.891525415 0.882879733 0.97150569 0.922328949 375094927 bphc Saccharomonospora marina XMU15 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora marina; 0.793157072 0.905489019 0.864232864 0.891820924 0.897991774 0.852975819 0.824428753 0.866316328 0.82064023 0.889457782 0.818901831 0.823186572 0.862488968 0.81258674 0.819738428 0.848827373 0.854564897 0.877688936 375079858 fthfs Paenibacillus sp. Aloe-11 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 0.951186127 0.9366745 0.936159516 0.931235591 0.92043079 0.94689505 0.919668056 0.954887084 0.970775754 0.914905106 0.987180065 0.998164108 0.926624801 0.964111524 0.903376971 0.953740378 0.914689639 0.962433923 260778296 trza Vibrio coralliilyticus ATCC BAA-450 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio coralliilyticus; 1.14429571 1.067101747 1.100107464 1.119051679 1.100664588 1.123629421 1.112773729 1.089170125 1.096724889 1.104534777 1.075958985 1.112984275 1.07496351 1.07154764 1.014704817 1.068819167 1.110390938 1.114821159 55229415 urec Haloarcula marismortui ATCC 43049 Nitrogen Ammonification NA superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloarcula;species:Haloarcula marismortui; 0.887428447 0.858114603 0.85990464 0.932652268 0.899692544 0.874013891 0.885345945 0.888523907 0.910820732 0.873227774 0.873586368 0.859886856 0.869240768 0.811326826 0.797886973 0.823421395 0.913029078 0.842941191 389590174 catechol_b Sphingobium indicum B90A Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium;species:Sphingobium indicum; 0.953952044 0.951263289 0.906455933 0.929912966 0.887578133 0.952882365 0.90367061 0.995459239 0.927479762 0.933933586 0.886334882 0.900846446 0.88219109 0.920860141 0.855381984 0.876911415 0.932367464 0.95180443 311228766 vana Frankia sp. EuI1c Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 0.879755768 0.871662796 0.843555965 0.855942093 0.791086561 0.856633939 0.855986711 0.875074531 0.834161338 0.808412325 0.84042135 0.863765967 0.907260863 296426429 phenol_oxidase uncultured bacterium Carbon Cycling Carbon degradation Lignin superkingdom:Bacteria; 0.96063352 0.841422144 0.88854255 0.89079888 0.89085598 0.825905476 0.866976613 0.831035419 0.870374475 0.859575225 0.849997523 0.865798882 0.875552662 0.8408104 0.84485858 0.86466861 0.855566779 409392758 scnabc Gordonia rubripertincta NBRC 101908 Organic Remediation Others NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia rubripertincta; 0.819316384 0.867656897 0.826682634 0.878105833 166860730 badh Pseudomonas putida GB-1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 0.857706068 0.826448751 0.844005425 0.866312359 0.860367871 0.866934785 0.888253945 0.900680445 0.83535279 0.850471572 0.836477209 0.834613591 0.850842018 21224748 badh Streptomyces coelicolor A3(2) Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 1.11493098 1.113747774 1.088643708 1.092924755 1.111823352 1.112839244 1.10634639 1.086790824 1.10240042 1.129833775 1.136254986 1.100206939 1.088680145 1.099353979 1.072823583 1.089472828 1.110028998 1.138167268 124266668 fccab Methylibium petroleiphilum PM1 Sulfur Sulfide Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 0.877572296 0.98344849 0.889363098 0.954317603 0.965379146 0.909930083 0.970808117 0.902648264 0.928827104 0.892935808 0.905528849 1.002443988 0.982563952 0.889368063 0.943206379 0.919635018 0.902933915 333442363 tktA Methyloversatilis universalis FAM5 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Methyloversatilis;species:Methyloversatilis universalis; 0.959489192 0.945719735 0.918655311 0.929273334 0.881007376 0.926819849 0.859575685 0.89969647 0.945267279 0.946620522 0.887275124 0.897168433 0.855092566 0.940953206 0.828395049 0.894136271 0.972180917 0.970883909 182678432 TIM Beijerinckia indica subsp. indica ATCC 9039 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Beijerinckia;species:Beijerinckia indica; 1.26896252 1.283062827 1.267876685 1.283347293 1.267687762 1.284129246 1.27326318 1.277746388 1.268678581 1.232348776 1.247204819 1.305594696 1.239218052 1.249500405 1.24352453 1.265856485 1.251482256 1.250419876 399012030 nagg Pseudomonas sp. GM16 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.975319474 0.964318996 0.956961577 0.966976575 0.978392429 0.963268692 0.932530098 0.987651517 0.962784835 0.931132929 0.923930298 0.910016997 0.957922989 0.862814237 0.876019377 0.904177483 0.956953902 0.982151833 380317953 terc Listeriaceae bacterium TTU M1-001 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Listeriaceae; 0.752418155 0.786175391 0.807452433 0.801173017 238591869 xylanase Moniliophthora perniciosa FA553 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Marasmiaceae;genus:Moniliophthora;species:Moniliophthora perniciosa; 0.951344498 0.990050554 0.933716578 0.891246263 0.895705333 0.914270212 0.966228158 0.965437938 0.935073643 0.889634233 0.978417706 0.933770813 0.941133811 0.841638952 0.924988346 0.94211262 0.946812542 29606454 amyA Streptomyces avermitilis MA-4680 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 0.818048386 0.828991061 0.881812643 0.85911986 0.922167655 0.828805764 0.842813388 0.795450224 0.799731172 0.87555146 0.872503801 0.818215265 0.884228827 0.89130877 0.863258156 0.844162855 0.854197608 0.821067701 256361008 terc Catenulispora acidiphila DSM 44928 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 1.125936882 1.104705976 1.116954424 1.113395855 1.143045041 1.112299196 1.114752219 1.064399188 1.067547683 1.086739554 1.10279236 1.072002288 1.065918288 1.052764296 1.020196617 1.047898034 1.095031278 1.101839126 16505117 nirb Salmonella enterica subsp. enterica serovar Typhi Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 0.840446433 0.998960022 0.885111938 1.002912353 0.978120133 0.970832764 0.873312925 0.961974096 0.918849844 0.974131838 0.884877079 0.980964367 0.914467778 0.997789047 0.863425742 0.942892613 0.926546478 0.991966531 2765429 vana Pseudomonas putida Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.962993474 1.021368159 0.966770455 0.968051664 0.988210942 0.991209062 0.925359353 0.906497893 0.92177506 0.955114554 0.884613629 0.934513084 0.916409376 0.960721983 0.935044532 0.944403518 0.98146225 1.007254185 380878361 urec Thiorhodovibrio sp. 970 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiorhodovibrio; 0.927237152 0.944042845 0.911163716 0.898671636 0.941038829 0.966178492 0.886862362 0.894249047 0.927357135 0.898021519 0.861692528 0.868086536 0.833197126 0.863500951 0.86253473 0.871060612 0.902107291 0.95795819 386422294 SoxA Thiothrix nivea DSM 5205 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Thiotrichaceae;genus:Thiothrix;species:Thiothrix nivea; 0.884747764 0.862945495 0.869503871 0.868494833 0.843994192 0.832296776 0.86977205 0.86691921 0.878109844 0.886069679 0.861944809 0.85964267 0.830339449 0.792368212 0.852116192 0.8621989 0.85770138 11344610 nirs Pseudomonas fluorescens Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.939700954 0.962158865 0.934669478 0.921574342 0.948699331 0.971447968 0.969577211 1.0155754 0.959099405 0.964687187 0.931907758 0.920768072 0.935903627 0.909891075 0.884914921 0.896122505 0.961662122 0.890683062 302474538 amyA Streptomyces griseoflavus Tu4000 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseoflavus; 1.024157424 1.024553828 1.044858253 1.008430515 1.014139811 1.008772854 0.988570046 1.015309439 1.007645036 0.999867757 1.033094701 1.003898301 0.979209055 0.97454829 0.934755784 0.958820145 1.015824277 1.011233965 402567008 alkb Burkholderia cepacia GG4 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cepacia; 1.066042899 1.061997321 0.982883489 1.034313319 0.999245938 1.050375309 0.957713596 0.979871707 1.009328711 1.00307827 0.988932163 0.995513107 0.939793937 0.981013867 0.954665545 0.932794307 1.039722234 1.017061619 345003160 amyA Streptomyces sp. SirexAA-E Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 0.908338765 0.958980263 0.968543614 0.930271029 0.887658285 0.939453412 0.855063177 0.849113616 0.879652015 0.811594373 0.869685604 0.866378179 0.874747805 0.875218335 0.967662872 0.960034335 383320528 amyA Methanocella conradii HZ254 Carbon Cycling Carbon degradation Starch superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanocellales;family:Methanocellaceae;genus:Methanocella;species:Methanocella conradii; 0.871780718 0.801949386 0.855309086 0.900573181 0.852998888 0.844065131 0.852665173 0.875210385 0.866792482 0.847426893 0.865673085 0.842250606 315592598 catechol_b Thermaerobacter marianensis DSM 12885 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XVII. Incertae Sedis;genus:Thermaerobacter;species:Thermaerobacter marianensis; 0.92719245 0.986705238 0.890037798 0.934304224 0.922701904 0.944438651 0.935999217 0.900343327 0.924580639 0.917049013 0.908625505 0.915610924 0.893412832 0.902207728 0.878131234 0.90376421 0.894233342 0.896038484 384069979 arsc Fibrella aestuarina BUZ 2 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Fibrella;species:Fibrella aestuarina; 0.925101606 0.911076566 0.963364932 0.970719321 0.959730076 0.960983871 0.982716055 0.956989009 0.93850594 0.986748482 0.961109411 0.927731345 0.945947115 0.914153716 0.84166044 0.899612046 0.979216623 0.905661776 281403378 xylanase Prevotella copri DSM 18205 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella copri; 0.844007028 0.841919497 0.825756865 0.800212646 88186476 endochitinase Sanguibacter antarcticus Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Sanguibacteraceae;genus:Sanguibacter; 1.064496976 1.037793728 0.978857072 1.059252683 0.969457859 1.050005749 0.970432969 1.009521962 1.024345436 1.014531611 0.981047905 0.996622836 0.968645709 1.012017456 0.934630812 0.975622208 1.054815102 1.03672031 147847555 CsoS2 Synechococcus sp. WH 7803 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 0.780538986 0.81556831 118472241 amyA Mycobacterium smegmatis str. MC2 155 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 0.9295915 0.907854132 0.969614715 0.939959175 0.952498328 0.98375402 0.916785335 0.863694943 0.950785771 0.918641623 0.879063452 0.899508987 0.915813533 0.932033725 0.955959576 0.910742172 0.998708595 0.966314375 365879556 SoxC Bradyrhizobium sp. ORS 375 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 1.02455418 1.011138922 1.01144491 0.994971493 0.973446649 1.016605572 0.980098674 0.967918898 0.986779209 1.016354393 0.997567624 0.983668253 0.943392882 1.002192713 0.929594884 0.959011375 0.94508043 0.995873746 112463637 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.015031547 1.024993969 0.99429253 0.997450937 0.956578997 1.038669736 0.962394582 1.01730048 1.042635559 1.005800748 0.960543919 0.952393831 0.918987075 0.965929609 0.897564561 0.970999318 0.969026295 1.016374837 162281286 soxY Hoeflea phototrophica DFL-43 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Hoeflea;species:Hoeflea phototrophica; 0.84593112 0.822992647 0.860217977 0.854486383 0.820500832 0.839787357 0.842398289 0.828344989 0.829439361 239613261 phospholipase_D_fungi Ajellomyces dermatitidis ER-3 Carbon Cycling Carbon degradation Phospholipids superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces dermatitidis; 0.875388145 0.85033452 0.903072703 0.912134991 0.864624611 0.863216912 0.883993238 0.921981897 0.889985937 0.845736706 0.85194453 0.86859938 0.829837897 0.926985113 0.85178032 69287553 ara Kineococcus radiotolerans SRS30216 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Kineosporiaceae;genus:Kineococcus;species:Kineococcus radiotolerans; 0.924403975 0.938452291 0.92125444 0.982743288 0.955701129 0.965546168 0.958260456 0.979355156 0.94919186 1.024842342 0.940262106 0.955890931 0.948840051 0.944765239 0.918100106 0.962992414 0.979711716 1.01727015 379990469 dsrB uncultured bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.972320485 0.907011303 0.894553318 0.919470274 0.890141548 0.919690506 0.868430227 0.876359021 0.931018406 0.920553757 0.924417627 0.880440183 0.837474662 0.895387406 0.846817831 0.898508334 0.959552548 0.90919333 315663923 pectinase (pectate_lyase) Prevotella salivae DSM 15606 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella salivae; 0.77982632 0.81139623 0.80640946 0.816261689 260221820 tktA Curvibacter putative symbiont of Hydra magnipapillata Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Curvibacter; 0.815919728 0.835819417 0.869010921 0.873574181 0.89349315 0.8481847 0.928410834 0.88877172 0.822179686 0.87372041 0.845617063 0.864986957 0.833997673 0.814711632 0.859507781 0.823222685 298242341 vgb Ktedonobacter racemifer DSM 44963 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Chloroflexi;class:Ktedonobacteria;order:Ktedonobacterales;family:Ktedonobacteraceae;genus:Ktedonobacter;species:Ktedonobacter racemifer; 0.846757865 0.831013471 0.850651564 0.872134523 0.854138534 0.814813 0.860398062 0.834834879 0.780994966 0.826619081 0.833466914 0.799314993 0.855801349 0.822029166 188592238 bphd Cupriavidus taiwanensis Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus; 0.859526822 0.94303748 0.808808159 0.868794157 0.836275924 0.947846268 0.847939686 0.871438828 0.826018347 0.934156275 0.862118111 0.852139089 0.860202579 0.861252521 0.873326844 0.86782105 0.914154016 260430198 nitrilase Citreicella sp. SE45 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Citreicella; 1.024230393 1.060242689 1.031001698 1.031945849 1.035788454 1.040478371 1.003930535 1.00700982 1.031495184 1.033137095 0.975630329 1.050190062 1.016659977 0.995522668 0.990870792 1.00454222 1.051349185 1.026058629 317170091 ppx Mesorhizobium ciceri biovar biserrulae WSM1271 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium ciceri; 1.464298012 1.443965633 1.442751508 1.419213932 1.406449449 1.453218307 1.411544012 1.451651745 1.426543074 1.435049876 1.458541369 1.471544946 1.388302644 1.41171118 1.417393719 1.422767625 1.443708117 1.442665749 171186240 por_DiC4HB Thermoproteus neutrophilus V24Sta Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum neutrophilum; 0.848142118 0.846459454 0.832275719 0.870987344 0.881527276 0.895100169 0.908393893 0.878952158 0.864390197 0.89987269 0.867648296 0.928794361 0.839367439 0.903965389 0.799350888 0.886843141 0.836655516 0.86027004 302533126 urec Streptomyces sp. C Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 1.357944245 1.293060499 1.309535844 1.348393924 1.296819801 1.351275774 1.294544303 1.333639255 1.300078079 1.295497255 1.301701166 1.308670518 1.288650779 1.292944113 1.282632999 1.331823944 1.340251484 1.295814673 258405620 mer Desulfohalobium retbaense DSM 5692 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfohalobiaceae;genus:Desulfohalobium;species:Desulfohalobium retbaense; 1.157505844 1.133359967 1.09585168 1.158479752 1.131025517 1.099242264 1.103361876 1.163908223 1.151851823 1.121184313 1.130576772 1.157509767 1.066795436 1.081621441 1.033522069 1.06561302 1.122897174 1.156591775 139004179 nifh uncultured nitrogen-fixing bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.926789665 0.912273012 0.915174292 0.874611787 0.905876022 0.906738519 0.980373565 0.876757646 0.892444419 0.896081328 0.909841627 0.88649096 0.888330696 0.952381817 0.836636738 0.934452014 0.887946615 0.979001977 144577478 actin_Viridiplantae Ostreococcus lucimarinus CCE9901 Other Phylogenetic NA NA 0.880610717 0.857988696 0.824346695 0.883322067 0.822835624 0.858807632 0.803499706 0.834169325 0.854635924 0.815896133 0.832466115 0.851422022 0.870803545 331025105 PRI Pseudomonas syringae pv. oryzae str. 1_6 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas coronafaciens; 1.384936407 1.328114561 1.328556575 1.336305362 1.304238301 1.345482095 1.301818938 1.345951565 1.332767635 1.313870498 1.328068105 1.340953311 1.299614657 1.287566307 1.301300759 1.334174739 1.338424752 1.333958465 157850317 one_ring_23diox uncultured bacterium Organic Remediation Aromatics Other aromatics superkingdom:Bacteria; 1.022107599 1.041674441 0.970150159 1.022254163 0.932624757 1.018608387 0.971728534 1.061129234 1.023815298 1.033180227 1.034940606 0.992178551 0.919638402 0.990358677 0.897061459 0.973407553 1.025592482 1.059704112 194359406 mer Pseudomonas aeruginosa Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 1.116550822 1.067664867 1.074857443 1.10910574 1.083151759 1.100753421 1.109423309 1.086140868 1.08665465 1.068315656 1.026296293 1.086947481 0.997914268 1.025823712 0.967928098 1.022252804 1.084792832 1.083582487 338820385 mer Agrobacterium tumefaciens F2 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 0.831130969 0.827056551 0.874272398 0.811411471 0.79531484 0.823002672 0.814531614 0.851376293 0.81126093 237886442 ara Micromonospora sp. ATCC 39149 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Micromonospora; 1.122976064 1.137477432 1.095094283 1.127221154 1.099669393 1.143506288 1.102922939 1.118835874 1.095147379 1.12238956 1.117229806 1.121334359 1.094685848 1.092430709 1.11053978 1.138367067 1.110028656 1.097565494 284927642 alkb uncultured bacterium Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria; 0.839754157 0.955885508 0.916792655 0.896100771 0.821702726 0.872279126 0.894984565 0.930484048 0.846546831 0.857036351 0.850005785 0.954676695 2980982 endoglucanase Actinomyces sp. 40 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces; 1.107116865 1.062912125 1.097126515 1.072768433 1.077630944 1.079098833 0.997905097 1.077848438 1.083545839 1.086418097 1.07853932 1.097816633 1.071081403 1.100167393 1.057561437 1.092640645 1.097483259 1.093813252 219563104 mult_ring_12DiOx uncultured bacterium Organic Remediation Aromatics Other aromatics superkingdom:Bacteria; 0.935172801 0.897527631 0.936301915 0.944385577 0.939904166 0.908324591 0.944717312 0.950282746 0.91001389 0.881187186 0.912524611 0.882465053 0.870107143 0.839159398 0.863710301 0.828769195 0.8907897 0.91698995 323358481 xylanase Microbacterium testaceum StLB037 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Microbacterium;species:Microbacterium testaceum; 1.056699312 1.103162177 1.034993821 1.086188696 1.073114861 1.093801334 1.079471924 1.068874668 1.069858527 1.065315649 1.061103347 1.093224522 1.060954666 1.045360711 1.042600797 1.071233514 1.061202642 1.050559947 3242405 gdh Thermococcus profundus Nitrogen Ammonification NA superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Thermococcus; 0.825112085 0.82997619 0.867955195 0.810017675 0.835683553 0.839127874 0.814861971 0.859158944 0.813802703 0.80072592 0.881851201 68164622 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.994573072 0.999897226 0.960632544 0.962103549 0.982199743 1.003146866 0.941947336 0.91999161 0.962102376 1.003424064 0.979616335 0.976350382 0.957064177 0.93812529 0.921192195 0.944579462 0.995392485 0.979054037 302881943 nitrate_reductase Nectria haematococca mpVI 77-13-4 Nitrogen N Assimilation NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Nectria;species:Nectria haematococca; 0.765904291 0.810087616 0.799849695 0.817121276 300390289 fthfs uncultured bacterium Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria; 0.964666676 0.930637547 0.924082283 0.96265595 0.971002207 1.014682373 0.980366927 0.936234963 0.944626844 0.966384465 0.94290721 0.949119252 0.969217845 0.987439303 0.964029224 0.937044428 0.962940072 0.939338942 307545825 nirb Halomonas elongata DSM 2581 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas;species:Halomonas elongata; 0.913559174 0.939972544 0.912415083 0.879361551 0.897802348 0.933950969 0.851457064 0.878927534 0.921487083 0.908060801 0.90018894 0.895248296 0.863670821 0.850371264 0.847426312 0.901499316 0.947823063 0.951222551 329956217 RgaE Bacteroides clarus YIT 12056 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides clarus; 0.860897472 0.857298874 0.908181287 0.905395418 0.907231716 0.96063668 0.868100001 0.985628159 0.958154629 0.863723486 0.835556596 0.869239816 0.834234442 0.851655225 0.830766293 0.854355476 0.894574366 0.913500251 147886170 phenol_oxidase uncultured bacterium Carbon Cycling Carbon degradation Lignin superkingdom:Bacteria; 1.086979178 1.067633463 1.064900613 1.065570282 1.03501341 1.075316151 0.987957786 1.02504098 1.044943577 1.05981274 1.068298048 1.036785588 1.048602811 1.05375719 1.01875548 1.045512136 1.058659666 1.071090309 384566222 bphF1 Saccharomonospora glauca K62 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora glauca; 1.078566402 1.065541688 1.034189808 1.015997205 1.015784489 1.020185159 0.963409676 1.037171247 1.052449964 0.98574225 0.947945225 1.012298351 0.989527351 0.973137264 0.933628194 0.983739958 1.022706322 1.020373821 197093940 dmsa Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 0.760874228 0.801052103 319924947 chitinase Terriglobus saanensis SP1PR4 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Terriglobus;species:Terriglobus saanensis; 0.917776433 0.884813629 0.886877305 0.974840065 0.931617489 0.971407133 0.942312599 0.880164159 0.986542526 0.894533626 0.90030016 0.930750944 0.856218796 0.852474041 0.825139512 0.898371372 1.011327302 0.920987544 333372931 arsc Desmospora sp. 8437 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Thermoactinomycetaceae;genus:Desmospora; 1.012364741 1.000466495 1.045946621 1.037841167 0.935827641 1.035926992 0.967469359 0.986869641 1.027082781 0.999245556 1.025172981 0.943745318 0.969551449 0.985337774 0.941302851 0.965546704 1.039062938 1.025869979 145304531 bphc Salinispora tropica CNB-440 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora tropica; 0.777845745 0.868976256 0.833398146 0.880512378 0.837132931 0.86781871 0.88121017 0.880515551 0.817243866 0.809232931 0.849122803 0.894500406 0.881191707 0.828313613 187736156 acetylglucosaminidase Akkermansia muciniphila ATCC BAA-835 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobiaceae;genus:Akkermansia;species:Akkermansia muciniphila; 1.191235228 1.192391759 1.164222931 1.202838762 1.146393105 1.188321677 1.157720083 1.188396424 1.175924368 1.172681862 1.135977443 1.183742001 1.101394888 1.157485342 1.11072713 1.133266152 1.162363282 1.175335654 328921708 pgk gamma proteobacterium IMCC3088 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 1.107571289 1.041725862 1.081014558 1.09097525 1.125577147 1.074111864 1.102488329 1.020676916 1.086537543 1.00572564 1.004470539 1.051412808 1.005432468 0.990406433 1.016627777 1.036823315 1.001555192 1.055481651 90954589 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.859697447 0.897471886 0.876556066 0.856628329 0.887349448 0.803771147 0.934215222 0.834967685 0.833303279 0.792272127 0.875217854 0.880002558 45386183 narg unidentified bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.30738041 1.266207038 1.278820882 1.28691249 1.292419772 1.294171945 1.273907031 1.248962485 1.254191563 1.279082446 1.267066789 1.279038726 1.254166121 1.264787752 1.29177789 1.258678517 1.278769491 1.256037281 186473357 bphd Burkholderia phymatum STM815 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 1.171341044 1.184583714 1.114352737 1.178218069 1.144273987 1.201380521 1.120803525 1.124108898 1.133199124 1.160930405 1.124998902 1.134460982 1.124376612 1.14687602 1.07696671 1.118597224 1.173594655 1.195611198 333921456 alkb Amycolicicoccus subflavus DQS3-9A1 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Amycolicicoccus;species:Amycolicicoccus subflavus; 0.871087278 0.879158011 0.885924653 0.89110031 0.87105184 0.877379874 0.846595826 0.878508351 0.830689021 0.857801828 0.867143388 0.895605601 0.8476237 336392613 CsoS1_CcmK Lactobacillus coryniformis subsp. torquens KCTC 3535 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus coryniformis; 0.860025434 0.856661796 0.871651562 0.887089241 0.86221024 0.802556892 0.861076911 0.919527219 0.89305802 0.890005613 0.868058448 0.942345357 0.816014281 0.811757858 0.877582588 0.880380774 78102285 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.799611324 0.97143045 0.821953877 0.800270009 0.836111823 0.830763899 0.823209398 0.817937484 0.831397973 0.82948812 0.790629345 0.825766462 254266621 soxY Methylobacterium extorquens DM4 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium extorquens; 1.162049405 1.170752765 1.142607081 1.184460152 1.149684127 1.178166352 1.113012625 1.13227199 1.130399383 1.141476469 1.139854121 1.145969931 1.135351075 1.148376322 1.094366616 1.128674248 1.18210737 1.144895141 283787053 nrfa Citrobacter rodentium ICC168 Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter rodentium; 0.954382939 0.984395511 1.026500039 1.007843081 0.994133212 1.005395441 0.999026379 0.98962307 0.991535521 1.017400471 1.030863131 1.021783024 0.927012557 0.94728899 0.937893683 0.919313639 1.009831573 0.958070892 12667630 dsra uncultured sulfate-reducing bacterium UMTRAdsr610-1 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 0.837896664 0.834087932 0.821099977 0.876104318 0.835372468 0.823450704 0.805497634 0.814578904 0.811121907 0.80842759 197714255 urec Streptomyces sviceus ATCC 29083 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 0.949619312 0.984463112 0.922930039 0.917649232 0.952119094 0.971174171 0.880985314 0.934042137 0.924335911 0.938766685 0.926867418 0.945507653 0.905403837 0.941850828 0.897045872 0.917983401 0.936070416 0.979456697 284167058 chna Haloterrigena turkmenica DSM 5511 Organic Remediation Other Hydrocarbons NA superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloterrigena;species:Haloterrigena turkmenica; 1.208626423 1.200727989 1.18594022 1.207368336 1.211966941 1.188896186 1.196172369 1.242788767 1.222235811 1.177961047 1.209901543 1.219149551 1.179577171 1.15287678 1.147824187 1.152280601 1.190381565 1.177464725 315589918 amyA Intrasporangium calvum DSM 43043 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Intrasporangium;species:Intrasporangium calvum; 1.104380068 1.059842238 1.063750461 1.039125132 0.94596948 1.024676369 0.978856524 1.02848625 1.050653491 1.049742776 0.971808456 1.053878469 0.973738681 0.984511862 0.96565936 0.972476896 1.050358034 1.047888676 374569992 Sir Alishewanella jeotgali KCTC 22429 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alishewanella;species:Alishewanella jeotgali; 1.076276069 1.068346467 1.053456186 1.100743574 1.032286173 1.046511473 1.030759842 1.057700927 1.097368711 1.064182513 1.061860199 1.065468867 1.046557435 1.026692657 0.992588638 1.012598165 1.074827148 1.028009497 296426247 phenol_oxidase uncultured bacterium Carbon Cycling Carbon degradation Lignin superkingdom:Bacteria; 1.268876978 1.254192375 1.247966042 1.342334562 1.218776838 1.302484224 1.215727364 1.247112913 1.229348946 1.255884913 1.241995267 1.228494747 1.231036299 1.233239775 1.217782297 1.233526472 1.2658584 1.261226531 227496021 mer Actinomyces urogenitalis DSM 15434 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces urogenitalis; 0.859010927 0.849094403 0.838320426 0.861538149 0.817218192 0.926070469 0.804210292 300390416 fthfs uncultured bacterium Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria; 0.999325201 0.944641746 0.934652833 0.921236395 0.818882523 0.905614383 0.882747747 0.892422745 0.91460771 0.929438659 0.875605036 0.890895405 0.852560337 0.873023941 0.864611055 0.806728482 0.94418531 0.981080436 78515749 nosz Bradyrhizobium sp. BTAi1 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.901191203 0.903071558 0.866096661 0.810383798 0.835597017 0.819351753 0.83818929 0.856350295 0.872114545 89069700 atzb Oceanicola granulosus HTCC2516 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola granulosus; 1.088413475 1.107893791 1.079551706 1.094797991 1.081645772 1.140956069 1.095077055 1.074457843 1.056030125 1.104828096 1.097760433 1.11434346 1.084259899 1.096576715 1.099038377 1.111885975 1.09711649 1.104094927 33348784 amyA Thermus thermophilus Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus; 0.903036149 0.869143471 0.892287051 0.908819104 0.911367934 0.957938242 0.915353135 0.909587837 0.931536474 0.936888919 0.874479114 0.926044102 0.886573349 0.913525519 0.879262001 0.88230173 0.902340336 0.890816298 56312803 apc Azoarcus sp. EbN1 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 0.901763927 0.933187135 0.818879869 0.871679324 0.845518876 0.906504377 0.830834664 0.83578887 0.872531227 0.874790149 0.875039544 0.894679887 0.859020848 0.835349632 0.83380355 0.896284838 0.943537546 164456186 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 1.069208858 0.985597593 1.077282912 0.832580356 0.898154041 0.854174471 0.965681048 0.925074582 0.819677202 0.920910214 1.050671172 0.924170617 0.918702695 0.950667713 0.992684723 0.990941709 326198777 xylg Gordonia neofelifaecis NRRL B-59395 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia neofelifaecis; 1.013619889 1.090655891 1.041100934 0.978261157 1.009043769 1.005920021 0.994151963 0.971346792 0.967549134 1.044993803 0.977327627 0.996215091 0.93337505 0.941160343 0.971932808 0.944844279 1.001467404 1.020976518 149375481 bend Marinobacter algicola DG893 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter algicola; 0.947143174 0.987036532 0.951013263 0.973926462 0.985956857 0.980458304 0.89201975 0.989247622 0.95361188 0.921854293 0.966598959 0.923029373 0.980043623 0.887391726 0.940013221 0.971598031 0.969754925 0.966492021 374296467 nifh Clostridium clariflavum DSM 19732 Nitrogen Nitrogen fixation NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium clariflavum; 0.853402311 0.828453708 0.93225929 0.923167188 0.904539017 0.85723178 0.852314469 0.868471986 0.955841225 0.863071931 0.823042274 0.939138739 0.84773362 0.848212652 0.868373081 0.907362859 0.935227931 262381226 ara Bacteroides sp. 2_1_33B Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides; 1.007075318 1.03777749 0.96391524 0.986428344 0.99367483 1.039733223 0.949044588 0.951262093 0.952560773 1.047200598 0.984557873 1.033484949 0.987863351 0.998454435 0.909862173 0.991057693 1.038312782 1.049308484 75993817 arra uncultured bacterium Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 0.926467657 0.946076128 0.94329503 0.892171828 0.903475929 0.974642627 0.885330365 0.883597417 0.896578642 0.956811409 0.917068528 0.92828508 0.903673116 0.914185476 0.862310045 0.887373074 0.938845885 0.945377094 290745590 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.117432871 1.132211365 1.121860101 1.120351089 1.113576438 1.12993185 1.11998144 1.122814678 1.112219742 1.173266095 1.138733224 1.135512703 1.091155449 1.098392615 1.075351845 1.106339018 1.155037237 1.164131609 311219402 phn Rhodomicrobium vannielii ATCC 17100 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Rhodomicrobium;species:Rhodomicrobium vannielii; 1.24306594 1.217563561 1.23411258 1.269214508 1.203995167 1.220386869 1.195140944 1.214749835 1.223608062 1.199961445 1.181113218 1.210461831 1.187203151 1.187194949 1.15988495 1.219143912 1.255269945 1.188149545 394311147 linb Acidovorax sp. CF316 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 1.01334275 0.958754712 0.96503286 1.000317922 1.012299324 0.985953598 0.969161449 1.003455177 0.981016017 0.920160369 0.936681334 0.989968422 0.969434569 0.908286902 0.942956948 0.934626954 1.017713775 0.979690546 258520037 fthfs Cardiobacterium hominis ATCC 15826 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Cardiobacteriales;family:Cardiobacteriaceae;genus:Cardiobacterium;species:Cardiobacterium hominis; 1.015398976 1.073244048 1.031882153 1.011481972 1.02761064 1.110898026 0.999628304 0.981439363 0.976507016 1.065034471 0.997391424 1.038681455 0.995657918 1.01767481 1.037832478 1.033358735 1.104340276 1.104887238 326692172 ppx Leuconostoc argentinum KCTC 3773 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Leuconostocaceae;genus:Leuconostoc;species:Leuconostoc lactis; 0.955294716 0.938987627 0.947494168 0.941163724 0.948042929 0.869334615 0.944876474 0.942257908 0.922921238 0.941209624 0.90907528 0.924133265 0.924974893 0.974839971 0.923342749 220934907 fccab Thioalkalivibrio sulfidophilus HL-EbGr7 Sulfur Sulfide Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio;species:Thioalkalivibrio sulfidophilus; 0.769047053 0.795527482 116062461 PEP_synthase Aeropyrum pernix K1 Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Desulfurococcales;family:Desulfurococcaceae;genus:Aeropyrum;species:Aeropyrum pernix; 1.008103863 0.991548089 0.995501857 0.983833741 0.960817777 0.983166108 0.946503041 1.001157341 0.967450187 0.973380183 0.961163328 0.985350534 0.928327679 0.970656233 0.92502639 0.959102094 0.991175204 0.988403601 365419928 vana Bradyrhizobium sp. STM 3843 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 1.03969928 1.045410409 0.965782793 1.044178108 0.985613837 1.036505597 0.951291266 0.984392065 0.981263136 1.005960262 0.967479154 1.009051691 0.963571687 0.991662621 0.924062598 0.974524914 1.023002498 1.056454712 170747695 mer Methylobacterium radiotolerans JCM 2831 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium radiotolerans; 1.357579541 1.342788841 1.342187463 1.347794754 1.334177599 1.374448222 1.337192583 1.344477556 1.327521104 1.328797757 1.324567964 1.330843419 1.307946646 1.277839415 1.264890334 1.316678745 1.344355969 1.321165 115432154 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.85144267 0.837355401 0.878992076 0.851698075 0.922454615 0.907493701 0.850498847 0.826391515 0.85948663 0.925970224 0.887403348 0.958617791 0.893972221 0.884027393 0.883300112 0.903045278 0.864386774 0.891986285 344338285 ppx Thiocapsa marina 5811 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiocapsa;species:Thiocapsa marina; 0.992613991 0.975519872 1.025995054 0.98639165 1.029728617 1.019733421 1.016253764 1.025075758 1.016078377 1.014385285 1.013921007 0.992025768 0.982504031 0.94729176 0.961492766 0.986450175 1.02833149 1.020435045 217497270 cysI Shewanella baltica OS223 Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella baltica; 0.829218769 0.788766755 0.818605161 0.819709278 0.901642014 0.824008021 0.848368301 188022950 dmsa Providencia stuartii ATCC 25827 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia stuartii; 0.828263457 0.907500657 0.865700458 0.853052771 0.82654372 0.894363408 299133300 fcba Afipia sp. 1NLS2 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Afipia; 0.93099877 1.180006984 0.920469261 0.880934371 0.889662216 0.851770043 0.829976765 0.828114726 0.868044126 0.866010909 0.910186818 0.934199944 0.80412851 0.913813891 0.849235554 351730178 urec Acidovorax radicis N35 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax radicis; 1.094153516 1.095436996 1.028997278 1.079285574 1.028623968 1.081731077 1.07979828 1.020720571 1.071520574 1.033265228 1.014571602 1.065392113 1.009361989 1.017961412 1.090908551 1.019010199 1.08837488 1.078637001 359783689 TIM Pseudomonas psychrotolerans L19 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas psychrotolerans; 0.861349848 0.882544881 0.887088006 0.89569021 0.894380781 0.903309971 0.886855447 0.880506435 0.871604035 0.87596976 0.874469349 0.855451474 0.879892451 0.81678846 0.847327163 0.87477802 0.870779562 299070991 cysI Ralstonia solanacearum CFBP2957 Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 1.171892893 1.167172917 1.157064342 1.209647728 1.176165614 1.184636662 1.168904058 1.185713705 1.167200705 1.130036562 1.155122541 1.165104016 1.169917249 1.116628687 1.150597215 1.161529364 1.198616274 1.143162573 91682817 poba Rhodopseudomonas palustris BisB5 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 0.999256862 1.026770905 1.015201802 0.998698045 0.959974424 1.009218981 0.959015958 0.995850653 1.006717442 0.988710058 0.97609867 0.954351914 0.945354843 0.94534038 0.921012835 0.933193585 1.000852783 1.000316443 255078846 mg_chelatase Micromonas sp. RCC299 Secondary metabolism Pigments Chlorophyll superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Mamiellophyceae;order:Mamiellales;genus:Micromonas; 0.774007571 0.82365371 0.813967472 0.86534562 0.817319212 0.811634178 0.805705753 0.827014969 0.838727186 0.90177191 71735592 xylc Pseudomonas syringae pv. phaseolicola 1448A Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas savastanoi; 1.197562808 1.154821748 1.186857734 1.229532141 1.145306144 1.198157837 1.143420621 1.196183972 1.180030652 1.165205345 1.136108781 1.165251806 1.148135985 1.170046085 1.165920576 1.163387631 1.220405533 1.166291088 374348802 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.065270538 1.008049748 1.026182897 1.011858589 1.057260315 1.061004778 1.044701158 1.054609111 1.036875173 1.005818706 1.054557041 1.047785005 1.045128454 1.007927392 0.967605272 0.99970025 1.013080284 1.026338986 377526508 amyA Gordonia sputi NBRC 100414 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia sputi; 0.89556897 0.876092467 0.897414552 0.828802268 0.823327664 0.853196907 0.887811016 0.794613569 0.864352507 0.831158196 0.850611861 0.884077402 0.841817376 0.859484793 0.882226279 296426611 phenol_oxidase uncultured bacterium Carbon Cycling Carbon degradation Lignin superkingdom:Bacteria; 0.791654679 0.854039649 0.776218266 0.841799843 0.807270289 0.826450548 342316532 aoxb uncultured bacterium Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 1.114904483 1.101739109 1.097632317 1.110553332 1.098012155 1.092641676 1.055571346 1.096221558 1.082057569 1.108198282 1.093238806 1.068113783 1.080729815 1.051163022 1.060721257 1.032565503 1.098502763 1.085338922 167769744 CsoS1_CcmK Anaerotruncus colihominis DSM 17241 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Anaerotruncus;species:Anaerotruncus colihominis; 1.367281676 1.336954385 1.317024861 1.335461601 1.311391719 1.327600163 1.300182102 1.305632305 1.333990751 1.326612188 1.31632702 1.333628834 1.271551276 1.258640931 1.258319323 1.302524525 1.334442708 1.304128612 354955248 amyA Bradyrhizobium japonicum USDA 6 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 0.974829748 0.956693989 0.990275452 0.942935057 0.998753209 0.980927521 1.023875975 0.987900629 1.007316024 0.972589427 0.975134647 1.010195901 0.969904104 0.929828688 0.931552281 0.913727256 0.9505607 340528563 exoglucanase Amycolatopsis mediterranei S699 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 1.059355506 1.064226959 1.284844724 1.105367831 1.098339088 1.022341921 1.024502767 1.08252799 1.182539709 1.029252185 1.06795395 1.134084877 1.011655811 1.04664772 1.034610072 1.079182259 1.053970516 1.080998291 345878199 mdh endosymbiont of Riftia pachyptila (vent Ph05) Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;species:endosymbiont of Riftia pachyptila; 1.0134656 0.983253718 0.991588537 1.080167932 0.950886711 1.040974989 0.982284229 0.985370625 0.974011048 1.013082937 0.956967326 0.982311415 0.979429268 1.031847735 0.974508574 0.973489839 0.998415216 0.999727171 297164831 amyA Truepera radiovictrix DSM 17093 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Trueperaceae;genus:Truepera;species:Truepera radiovictrix; 1.0720095 1.057796459 1.055768002 1.098238294 1.073061725 1.066108745 1.063966744 1.040884293 1.083579552 1.047618379 1.034271878 1.034901458 1.02073733 1.005276424 1.006530182 1.001225474 1.074441956 1.115475654 334261828 narg uncultured organism Nitrogen Denitrification NA 0.832690062 0.793258136 0.781623136 0.82919149 359317181 gdh Gordonia polyisoprenivorans NBRC 16320 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia polyisoprenivorans; 1.17864376 1.140080258 1.128932858 1.143720365 1.098261572 1.178127094 1.101134141 1.118593872 1.138968703 1.145331395 1.106625956 1.088415695 1.086397378 1.134630956 1.037125299 1.088667017 1.141311371 1.1646983 145236316 Glucose_oxidase_fungi Aspergillus niger Carbon Cycling Carbon degradation glucose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 1.066733151 1.067387912 1.058869383 1.056421089 1.003424615 1.054223796 0.986128364 1.051285994 1.038885515 1.002335618 1.01795378 1.019423132 1.004105599 1.006470468 1.001563079 1.017618016 1.067136433 1.036044607 296426459 phenol_oxidase uncultured bacterium Carbon Cycling Carbon degradation Lignin superkingdom:Bacteria; 0.900771276 0.920405627 0.825952454 0.86851436 0.879708807 225171965 dsrB Desulfonatronospira thiodismutans ASO3-1 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfohalobiaceae;genus:Desulfonatronospira;species:Desulfonatronospira thiodismutans; 0.862521434 0.916135675 0.854311132 0.924007388 0.888578758 0.862015922 0.895484955 0.845903255 0.907485971 0.836414651 0.829027981 0.819794345 0.805092306 0.848671722 0.902590836 0.875810382 0.918805589 330502496 arsc Pseudomonas mendocina NK-01 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas mendocina; 0.891773601 0.825000389 0.811458664 0.863282983 0.804316983 0.811048894 0.818008702 0.846667724 0.848853472 0.850420712 0.820604036 0.863883387 0.814810355 167594239 pmoa uncultured bacterium Carbon Cycling Methane Methane oxidation superkingdom:Bacteria; 1.003519259 1.002406007 1.010961262 0.964897961 0.944888278 1.019135693 0.911718266 0.995127074 0.970789253 0.986075493 0.955208368 0.950423798 0.955580007 1.013818942 0.95597274 0.994741613 1.015527431 1.029097961 291302150 amyA Stackebrandtia nassauensis DSM 44728 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Glycomycetaceae;genus:Stackebrandtia;species:Stackebrandtia nassauensis; 0.782252153 0.860500173 0.877897636 0.837986348 0.778838477 0.868864294 0.828408252 0.805594739 0.814759993 0.858350958 0.804654754 0.832803657 55379268 narb Haloarcula marismortui ATCC 43049 Nitrogen Assimilatory N reduction NA superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloarcula;species:Haloarcula marismortui; 0.880096682 0.860230067 0.833680737 0.885357049 0.806479905 211588246 cellobiase Penicillium chrysogenum Wisconsin 54-1255 Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 1.057818434 1.024788684 1.020235083 1.018869392 1.000181676 1.009700096 0.939142497 1.014933576 1.018988846 1.023549633 1.023532511 1.057787698 1.020973044 1.001798173 0.954248293 1.012627348 1.01521483 1.023268952 110678868 norb Roseobacter denitrificans OCh 114 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter denitrificans; 0.879690056 0.845059905 0.855541508 0.927731203 0.89355537 0.81140866 0.91585393 0.911441023 0.913493476 0.838051519 0.851124142 0.903568978 0.829548198 0.814810664 0.80311364 0.938327902 0.903511891 312270112 endoglucanase Ralstonia solanacearum Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 1.033869607 0.99760544 1.019842113 1.064230652 0.967814661 1.017910066 0.968908258 0.989408693 1.051935464 0.981324874 0.99476959 0.997001125 0.988411081 0.952596055 0.941178262 0.984315231 1.074348385 0.977728999 340360834 nitro Actinomyces sp. oral taxon 448 str. F0400 Organic Remediation Others NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 448; 0.846925891 0.872824041 0.832983207 0.889153181 0.832058183 0.938786358 0.833409688 0.811452861 0.893301882 0.868807571 0.873228773 0.841881838 0.876678973 0.864473599 0.887629094 145570660 GAPDH_Calvin Pseudomonas stutzeri A1501 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 0.964005184 0.923354551 0.922176984 0.881933458 0.907517706 0.893527866 0.940736693 0.854303295 1.011979341 0.901553707 0.885890798 0.922067339 0.938408632 0.851238477 0.887228751 0.925579615 0.919141669 0.953033266 83844818 hbh Sulfitobacter sp. EE-36 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 0.80505026 0.839629685 0.827261506 0.817167863 0.892568442 0.904140548 0.928931177 109452408 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.016628118 0.969031968 0.992790144 1.035593403 1.066994176 0.999618064 0.961804076 1.069874163 1.012683521 1.001456564 0.980583515 0.979087834 0.989684028 0.912110907 0.933825571 1.036696301 1.023061157 0.979348466 227843437 amyA Mobiluncus mulieris ATCC 35243 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Mobiluncus;species:Mobiluncus mulieris; 0.938037016 0.949049912 0.962767671 0.991295769 0.937122002 0.948873057 0.952178956 0.939324935 0.971160816 0.952825711 0.957657163 1.010613187 0.925939052 0.88304289 0.902500756 0.941459462 0.922269175 0.971236155 118575599 amoa Cenarchaeum symbiosum A Nitrogen Nitrification NA superkingdom:Archaea;phylum:Thaumarchaeota;order:Cenarchaeales;family:Cenarchaeaceae;genus:Cenarchaeum;species:Cenarchaeum symbiosum; 0.787641147 0.81127597 0.834305453 0.802197175 6048994 xylg Burkholderia sp. RP007 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 1.10931224 1.13128015 1.098484199 1.095281052 1.072148253 1.108868121 1.04708311 1.071056605 1.100746822 1.097005824 1.067849721 1.067682123 1.075946187 1.083416807 1.057723665 1.086840335 1.092339973 1.091172621 238752182 fthfs Yersinia rohdei ATCC 43380 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia rohdei; 0.857075723 0.807650623 0.864061765 0.879178027 0.841293527 0.812957668 0.842976179 0.856979522 0.804057499 0.848334059 0.831450549 0.970948243 0.914875581 378550722 amyA Citricoccus sp. CH26A Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Citricoccus; 1.033701565 1.018094734 1.032106728 1.084975374 0.934028359 1.057539271 0.985789661 1.031213657 1.044308671 1.047654736 1.006572083 0.994150379 0.948749535 1.029964536 0.985844812 0.991998127 1.055178933 1.051470916 325073053 nitrate_reductase uncultured stramenopile Nitrogen N Assimilation NA superkingdom:Eukaryota; 0.802461047 0.802598379 0.777017451 0.809212238 0.780942784 0.859865381 0.819700639 0.815211659 0.815288073 0.834267518 160917743 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.815528026 0.829268036 0.817592347 0.794464339 0.842346517 0.852541458 0.879830511 118472122 mhpc Mycobacterium smegmatis str. MC2 155 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 0.785333032 0.844462629 226940360 tehb Laribacter hongkongensis HLHK9 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Laribacter;species:Laribacter hongkongensis; 0.802383543 0.808987718 169855830 xylanase Coprinopsis cinerea okayama7#130 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 1.274140933 1.207249349 1.213642982 1.266245588 1.173202545 1.237189819 1.165756147 1.204441737 1.225306286 1.194252542 1.204229925 1.209694021 1.179374665 1.190241576 1.167530019 1.177476664 1.268765017 1.176481463 336302484 xyla Paenibacillus mucilaginosus KNP414 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 1.024858592 1.059026483 1.025407859 1.003451684 1.01902211 1.027236358 0.997252805 1.052580236 0.9970161 1.017629411 1.003610295 1.020730427 1.016391164 1.023899937 0.992745179 1.002648087 1.021186777 1.032225831 317465227 amyA Pseudoxanthomonas suwonensis 11-1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Pseudoxanthomonas;species:Pseudoxanthomonas suwonensis; 1.112749136 1.11290277 1.03616184 1.09043466 1.110465963 1.074238423 1.035207316 1.02376063 1.081605781 1.049813852 1.021530708 1.09527546 0.990557211 1.022407776 0.968039848 1.015570977 1.061789773 1.057418368 110167910 mer Trichodesmium erythraeum IMS101 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Trichodesmium;species:Trichodesmium erythraeum; 0.94665752 0.870224511 0.898976359 0.935819493 0.847254253 0.914776881 0.828808804 0.826750664 0.888923467 0.935465864 0.871856526 0.872904491 0.809295517 0.875502776 0.875799547 0.842202485 0.846038565 118748744 vana Marinomonas sp. MWYL1 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Marinomonas; 0.802471705 0.838237402 0.847754454 0.84054493 0.816682092 0.881725385 0.881017688 0.8748284 0.81387886 0.874282809 0.868503098 0.91016041 0.871722725 374607585 amyA Mycobacterium tusciae JS617 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tusciae; 1.247774608 1.240816092 1.22807258 1.214104694 1.221640286 1.243092792 1.21244771 1.202859197 1.197483055 1.202112967 1.227214308 1.218790483 1.206897647 1.213373749 1.208021507 1.19511615 1.235213044 1.214241942 89052885 alkb Jannaschia sp. CCS1 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Jannaschia; 0.923862949 0.954034608 0.92417513 0.955444332 0.981664416 0.972455739 0.942670932 0.952643214 0.949709836 0.936270317 0.960656072 0.957843892 0.895035863 0.908277766 0.858614928 0.927588404 0.884055919 0.921938461 333480072 bphF1 Amycolicicoccus subflavus DQS3-9A1 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Amycolicicoccus;species:Amycolicicoccus subflavus; 0.813233203 0.871554517 0.85786573 0.858163098 0.824546376 0.822690391 0.819139053 0.889126823 0.823236691 0.834502784 333371551 cda Desmospora sp. 8437 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Thermoactinomycetaceae;genus:Desmospora; 1.407133198 1.36115685 1.378925542 1.38814327 1.376952758 1.437756979 1.365860036 1.369257927 1.375253602 1.345833851 1.369694217 1.349893843 1.358487635 1.334633566 1.361941127 1.36257876 1.410191799 1.365955181 329575187 phytase Parasutterella excrementihominis YIT 11859 Phosphorus Phytic acid hydrolysis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Sutterellaceae;genus:Parasutterella;species:Parasutterella excrementihominis; 0.87323576 0.841584965 146282380 arylest Pseudomonas stutzeri A1501 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 0.803213327 0.787469231 0.825951171 0.789474475 0.831764936 238843148 cutinase Microsporum canis CBS 113480 Carbon Cycling Carbon degradation Cutin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Arthrodermataceae;genus:Arthroderma;species:Arthroderma otae; 1.019434514 1.014254611 0.976541257 1.004021449 1.028623125 0.981399464 0.993619448 0.985003642 0.967863242 0.963715579 0.977134949 0.992417221 0.998718487 0.95907439 0.967887599 0.994891362 0.987332537 1.02886342 296184451 ara Bifidobacterium longum subsp. longum JDM301 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium longum; 0.982101325 1.050125373 0.972814971 1.011998826 1.004636579 1.01886759 0.987896364 0.980400876 1.007217801 0.979777499 0.969936034 0.995829891 0.95685074 0.965735578 0.95535589 1.01002842 1.007457096 0.963749996 343954410 nbac Muricauda ruestringensis DSM 13258 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Muricauda;species:Muricauda ruestringensis; 0.907647577 0.905946649 0.951151737 0.994557332 0.922693172 0.935844678 0.917758733 0.922152542 0.901950711 0.95722421 0.967848737 0.944561102 0.882494771 0.930011449 0.948825369 0.88799863 0.927175672 0.874249073 83943925 fthfs Sulfitobacter sp. EE-36 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 0.799640361 0.832813484 0.850105751 0.810011172 0.855370332 0.785713988 0.829201201 0.825003064 0.832518939 0.834671423 0.851887663 0.817849029 0.795242621 0.835613856 0.797153564 0.802673874 0.820601896 0.885235361 224010906 nitrate_reductase Thalassiosira pseudonana CCMP1335 Nitrogen N Assimilation NA superkingdom:Eukaryota;phylum:Bacillariophyta;class:Coscinodiscophyceae;family:Thalassiosiraceae;genus:Thalassiosira;species:Thalassiosira pseudonana; 0.818598063 0.831400988 0.804946517 0.804282797 0.809789499 0.791812293 0.780418019 0.871114193 271964639 ppx Streptosporangium roseum DSM 43021 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 1.183260563 1.158740966 1.188144258 1.220236155 1.185671013 1.195453821 1.197648024 1.190192932 1.175144989 1.161907373 1.179707504 1.207633999 1.158280247 1.158062543 1.161974542 1.202948898 1.171595445 1.138519238 124027099 sucA_DiC4HB Hyperthermus butylicus DSM 5456 Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Desulfurococcales;family:Pyrodictiaceae;genus:Hyperthermus;species:Hyperthermus butylicus; 1.030981442 1.068792961 1.101238226 1.081298786 1.03914795 1.050631214 1.035917167 1.058121474 1.043625431 1.04272714 1.138578605 1.069195049 1.022398128 1.023409584 1.003374604 1.024015887 1.080558351 1.02617424 149144755 B_lactamase_A Roseovarius sp. TM1035 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 0.981088624 0.918644311 0.94399143 1.009118022 0.947418 0.965557313 1.020821753 0.98487636 0.977726999 0.998628676 1.002147693 0.994446975 0.953866044 0.924408739 0.925211659 0.946904191 0.990959027 0.933632458 214028622 soxY Ruegeria sp. R11 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 1.378671702 1.345342689 1.331253189 1.335626897 1.299758371 1.375324671 1.301913468 1.314515833 1.318193176 1.307451046 1.334102677 1.310271231 1.309710786 1.309916801 1.297867281 1.326130174 1.35556395 1.331325207 223984910 dsra Holdemania filiformis DSM 12042 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Firmicutes;class:Erysipelotrichi;order:Erysipelotrichales;family:Erysipelotrichaceae;genus:Holdemania;species:Holdemania filiformis; 1.082346458 1.117611365 1.058823873 1.086277437 1.085222862 1.104387115 1.081492493 1.092360391 1.094702352 1.074405359 1.062931717 1.083025835 1.078725175 1.022889775 1.080591817 1.071715422 1.076494439 1.067048272 340359660 nira Actinomyces sp. oral taxon 448 str. F0400 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 448; 1.062068877 1.057199523 1.010680141 1.05841442 0.990337611 1.079727221 1.000963799 1.006482491 1.039884982 1.04828402 1.002333624 1.014523499 0.990657117 1.066193958 0.955742657 0.994273735 1.073479481 1.04480501 256558359 urec Brachybacterium faecium DSM 4810 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dermabacteraceae;genus:Brachybacterium;species:Brachybacterium faecium; 0.909189963 0.879253152 0.885880399 0.938014727 0.807474382 0.865468435 0.853528178 0.92111073 0.86584149 0.817069073 0.849125655 0.921210611 0.921043517 374435164 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.871871488 0.881743237 0.85523656 0.894263015 0.869279261 0.845994497 0.850989647 0.862417162 0.842912415 0.849283344 0.847319239 0.863080896 0.812749863 0.832280563 0.890119944 78093548 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.971548899 1.023191971 0.97654083 0.995333484 0.942428541 1.004704129 0.913903087 0.939469177 0.930836544 0.998334386 0.925182122 0.928134226 0.895121045 0.955316161 0.855492735 0.914225776 0.968913292 1.042527232 325917313 proO Xanthomonas vesicatoria ATCC 35937 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas vesicatoria; 1.304333438 1.2540914 1.31006462 1.315802864 1.300604273 1.284964133 1.266704823 1.290452868 1.256669319 1.296252236 1.281615514 1.30219861 1.273768355 1.249166763 1.257194854 1.279888493 1.289128187 1.245341442 110627663 mannanase Phanerochaete chrysosporium Carbon Cycling Carbon degradation Hemicellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Corticiales;family:Corticiaceae;genus:Phanerochaete; 0.909739575 0.829050477 0.78197786 0.826099402 0.845732578 0.82029275 0.848554814 0.806932247 0.911300145 0.822755475 0.856335666 0.837017087 114767349 mer Roseovarius sp. HTCC2601 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pelagibaca;species:Pelagibaca bermudensis; 0.968832661 0.918177618 0.940059319 0.949724247 0.938477975 0.903682353 0.939162245 0.954799813 0.93685629 0.967862231 0.941312918 0.968198176 0.932211887 0.893697074 0.919464355 0.873235122 0.953892857 0.938023609 319925448 RgaE Terriglobus saanensis SP1PR4 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Terriglobus;species:Terriglobus saanensis; 0.871818895 0.910083284 0.863629275 0.850231855 0.866311724 0.809354889 0.821316396 0.820586854 0.846770327 0.834803228 0.818024599 0.795844553 0.828778264 389848676 nosz Haloferax mediterranei ATCC 33500 Nitrogen Denitrification NA superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloferax;species:Haloferax mediterranei; 1.116463537 1.146725235 1.086900941 1.147145843 1.069889597 1.106526656 1.016991805 1.037628353 1.128749322 1.117605696 1.080588943 1.139039975 1.08516326 1.068905037 1.041381919 1.068783693 1.125653087 1.09317538 319952413 xylanase Cellulophaga algicola DSM 14237 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Cellulophaga;species:Cellulophaga algicola; 0.806664629 0.817495267 0.798376874 0.835595289 0.810107424 0.830492879 0.835142485 0.812320815 0.829982911 0.832700544 0.792185896 0.78812306 0.794458339 0.850698516 297196022 ara Streptomyces pristinaespiralis ATCC 25486 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces pristinaespiralis; 0.921177849 0.974104287 0.901599864 0.93630994 0.97357152 0.967602965 0.922925731 0.883963357 0.890157836 0.963207867 0.934887851 0.921829927 0.95417965 0.933276054 0.878584905 0.951646716 0.931716846 0.980551806 21223376 exochitinase Streptomyces coelicolor A3(2) Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 1.098718408 1.097081325 1.12213829 1.093764921 1.09906889 1.158663576 1.105444756 1.09113579 1.096852436 1.118069429 1.085731773 1.126898897 1.073750958 1.149853341 1.06267615 1.106920792 1.08783345 1.127369875 302411782 badh Verticillium albo-atrum VaMs.102 Organic Remediation Aromatics Other aromatics superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticillium;species:Verticillium alfalfae; 0.958986723 0.789246141 302685431 amyA Schizophyllum commune H4-8 Carbon Cycling Carbon degradation Starch superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 1.130662709 1.128526322 1.099156199 1.149311708 1.098002436 1.122356373 1.078806698 1.112097492 1.113399268 1.088735553 1.077591436 1.102055571 1.094090383 1.078848792 1.134929857 1.095459569 1.1420491 1.128130621 125862066 rubisco Methanoculleus marisnigri JR1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;family:Methanomicrobiaceae;genus:Methanoculleus;species:Methanoculleus marisnigri; 1.059217851 1.009160938 0.989543814 1.036498906 0.970436336 1.015872091 0.968763227 0.976092227 1.041778127 1.001261874 1.008790001 0.98705051 0.959701011 0.984427953 0.925797472 0.996305067 1.049536147 1.023842013 189341599 rubisco Chlorobium limicola DSM 245 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium limicola; 0.861214298 0.805683593 0.825251177 0.820829565 46307971 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.88682455 0.886617284 0.848142215 0.917783963 0.837959816 0.853736482 0.854309558 0.881554454 0.906186605 0.796404328 0.886022267 0.881724286 0.832470295 0.839330029 0.832183419 0.920041298 0.872185348 117949580 phenol_oxidase uncultured bacterium Carbon Cycling Carbon degradation Lignin superkingdom:Bacteria; 0.817020459 0.836738817 0.847190603 0.860394165 0.874519148 0.829529091 0.854928614 0.784100514 0.846218175 0.840594692 0.813106497 0.945321493 0.852479391 0.875978411 0.884656835 404264235 exaa(moxf) Bradyrhizobium sp. CCGE-LA001 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.978775397 1.006440695 1.017122709 0.962261136 0.989913159 0.974697776 0.964702037 0.965219949 0.997218117 0.970056344 0.951864654 0.985633085 0.977347513 0.963080725 0.961213981 0.961861656 0.983107593 1.014900149 392437444 amyA Lactobacillus pentosus KCA1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus pentosus; 1.25459507 1.220518157 1.229612401 1.256764426 1.201096302 1.248609969 1.192400954 1.208723624 1.243461467 1.223458269 1.233280717 1.247488137 1.209102492 1.195038058 1.188795664 1.21301074 1.263567604 1.209290696 302865270 amyA Micromonospora aurantiaca ATCC 27029 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Micromonospora;species:Micromonospora aurantiaca; 1.250954922 1.309877877 1.226509007 1.269882865 1.247030599 1.285186583 1.235600185 1.225889036 1.228791037 1.236733893 1.219346306 1.24809429 1.232281306 1.244257734 1.227911362 1.232495975 1.254346043 1.261499319 55978127 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.109005301 1.095441582 1.148491862 1.121159324 1.109962704 1.089264133 1.066948483 1.088498272 1.118266893 1.105102286 1.105342453 1.127896214 1.064665214 1.067735915 1.06865437 1.049441909 1.108718157 1.09671729 325001908 amyA Pseudonocardia sp. P1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Pseudonocardia; 1.341493993 1.312366464 1.288802806 1.312535866 1.320145508 1.349482505 1.270519332 1.261954159 1.288127717 1.36686258 1.314920654 1.357232834 1.311901004 1.329981981 1.370470273 1.363915408 1.303417209 1.307174838 299538843 arsc Nitrosococcus watsonii C-113 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Nitrosococcus;species:Nitrosococcus watsonii; 0.817383185 0.854123674 0.835357027 0.79648579 0.837357568 0.864807559 0.79999302 0.795133094 0.832954033 0.855667932 408527732 pcpe Streptomyces davawensis JCM 4913 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces davawensis; 0.971250918 1.007901659 0.935982277 0.97821256 0.993079439 0.979043219 0.90771305 0.878871469 0.915109936 0.921767866 0.868548137 0.92274226 0.929060487 0.981110975 0.890893459 0.906517476 0.963677677 0.990845287 392449732 amyA Pelosinus fermentans A11 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Pelosinus;species:Pelosinus fermentans; 0.878776708 0.87920044 0.809325676 0.92213055 0.88602034 0.843652861 0.870382697 0.853781486 0.837398254 0.834608073 0.886489374 0.880248158 33391353 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.892145393 0.94169792 0.847824285 0.855866613 0.917466494 0.905040481 0.867655834 0.846199353 0.845678835 0.940313945 0.896362226 0.928748074 0.906492042 0.912929198 0.879072409 0.917693946 0.915204985 118761912 nitrilase Sphingomonas wittichii RW1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 1.646405996 1.616676897 1.574526322 1.576923937 1.55519503 1.63063029 1.537153889 1.564470617 1.56303268 1.568171368 1.565926444 1.565359627 1.522334796 1.563480944 1.523028705 1.563740676 1.605781577 1.578229444 119855819 urec Pseudomonas putida W619 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 0.909436357 0.898117657 0.821814795 0.883817712 0.844961845 0.867562421 0.806410435 0.83657001 0.853193593 0.840232672 0.808986656 0.828795155 0.861216699 0.892915083 10863129 nifh lactate SRB-Enrichment culture clone HBLac1 Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 1.663272445 1.600497249 1.616186716 1.612269778 1.606433693 1.649248599 1.601064546 1.634730587 1.615965057 1.603940155 1.615902695 1.615095612 1.574611194 1.54515645 1.601897953 1.615835283 1.612032173 1.588643419 51243149 pcpe Sphingomonas sp. tfd44 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 0.772602214 0.890417699 0.780403167 0.830278004 86556078 nira Synechococcus sp. JA-2-3B'a(2-13) Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 0.933962643 0.921496063 0.891604589 0.911086749 0.8370141 0.862442429 0.870090685 0.912359694 0.923464647 0.930233409 0.871618276 0.902587692 0.822166054 0.901426103 0.978680837 119391437 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.30780624 1.254409155 1.253917624 1.259298695 1.238624536 1.259259015 1.169250023 1.218760146 1.28340233 1.276319501 1.273461057 1.276106716 1.233610956 1.234763148 1.223238446 1.217215195 1.258347748 1.257244953 300503010 nirk Chryseobacterium gleum ATCC 35910 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Chryseobacterium;species:Chryseobacterium gleum; 0.997179176 1.004016013 0.986063979 1.031991666 1.026300618 0.97639437 1.008069128 0.965951537 0.991117167 1.001118394 0.990109102 1.014999935 0.969200065 0.927136942 0.911667341 0.970178904 0.984361563 1.010926954 215460737 chitin_deacetylase_fungi Moniliophthora perniciosa FA553 Carbon Cycling Carbon degradation Chitin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Marasmiaceae;genus:Moniliophthora;species:Moniliophthora perniciosa; 0.86866492 0.882336491 0.855483096 0.974235677 0.897803522 0.89159418 0.888641549 0.895202442 1.00353192 0.880404385 0.86320014 0.881522405 0.888701583 0.796157795 0.811398018 0.84285109 308050504 ppx Ferrimonas balearica DSM 9799 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Ferrimonadaceae;genus:Ferrimonas;species:Ferrimonas balearica; 1.013229928 0.986332382 1.011319836 1.066652804 0.984887109 1.029925855 1.018777797 1.043130628 1.019228884 0.991239058 0.991479308 1.034451891 0.956513637 0.96058244 0.913302413 0.985865301 1.037439672 0.986177477 255955931 nitrate_reductase Penicillium chrysogenum Wisconsin 54-1255 Nitrogen N Assimilation NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 1.250029129 1.197313825 1.229207686 1.204108264 1.185644179 1.051906425 1.104839488 1.124044417 1.246762399 1.195635882 1.214701071 1.194827206 1.182012364 1.120037105 1.12607498 1.103580002 1.231798306 1.215592837 241774118 ara Asticcacaulis excentricus CB 48 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis excentricus; 0.887035183 0.881622215 0.905298764 0.930147728 0.96625995 0.881115109 0.884369791 0.831416573 0.891873993 0.869797414 0.9077295 0.904285675 0.903783501 0.779678968 0.876896858 0.882392689 0.882476665 0.866340248 29828293 chitinase Streptomyces avermitilis MA-4680 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 0.804184943 0.827852563 0.80902348 0.852474536 29611066 amyA Streptomyces avermitilis MA-4680 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 1.113066766 1.125662513 1.065706831 1.116794347 1.060563247 1.146827122 1.065861561 1.108531581 1.096371887 1.117397456 1.053903473 1.082159494 1.066081701 1.097573705 1.009888072 1.052870456 1.132113421 1.144682875 225375867 amyA Roseburia inulinivorans DSM 16841 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Roseburia;species:Roseburia inulinivorans; 0.793845489 0.817709051 0.891662031 0.798312091 0.862297023 0.806742311 0.795487001 0.847290462 0.881292066 0.801922147 0.871505448 0.887314297 0.829768615 29652532 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.423546716 1.402539784 1.405087872 1.389083175 1.377990687 1.388441777 1.352387351 1.379483651 1.373223348 1.367224469 1.372878175 1.422230823 1.353765982 1.332295159 1.371988341 1.348706056 1.396361295 1.385286036 18150952 badh Pseudomonas putida Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.869576875 0.847904577 0.8796658 0.833952685 0.827710453 0.846574151 0.836368966 0.819339391 0.859331535 0.883065551 0.832771193 284812469 nitrate_reductase uncultured eukaryote Nitrogen N Assimilation NA superkingdom:Eukaryota; 0.953231986 0.972708534 0.977346418 1.001967098 0.997263824 0.997761916 0.985497593 0.981493859 0.948257076 0.96495538 0.945643047 0.931305834 0.967548769 0.937720678 0.968981172 0.951773937 0.972057622 0.980781959 118069597 arylest Serratia proteamaculans 568 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia proteamaculans; 1.028172018 1.002405393 0.986931323 1.016265203 0.992934191 1.017273627 1.003930748 0.968325755 1.013592308 0.979848272 0.994428135 1.015572579 0.965960197 0.885921896 0.906126441 0.899793083 1.058428667 0.939813582 188028237 tehb Erwinia tasmaniensis Et1/99 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia tasmaniensis; 1.098880911 1.115925509 1.084783614 1.103407653 1.109743728 1.137180975 1.088506328 1.078101152 1.062465221 1.069584245 1.067551794 1.094453661 1.095085127 1.085718378 1.081971127 1.066138354 1.137366858 1.105343204 156043008 endochitinase Sclerotinia sclerotiorum 1980 Carbon Cycling Carbon degradation Chitin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Sclerotinia;species:Sclerotinia sclerotiorum; 0.784793813 0.798313507 0.820405152 0.858946691 0.813733635 0.832198518 0.781636027 0.840547714 385181840 one_ring_23diox Burkholderia sp. Ch1-1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 1.120513906 1.128978043 1.074393897 1.104345725 1.060225383 1.123864264 1.096395339 1.113418286 1.077245354 1.085618493 1.082038487 1.086743507 1.066673419 1.059758824 1.032299085 1.089538695 1.113785243 1.139017429 170740957 tktA Methylobacterium sp. 4-46 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 1.061143565 1.056826235 1.033631968 1.094886872 1.00661343 1.031366558 1.002279287 1.007714653 1.062601367 1.031692325 1.002388542 1.020847179 0.991457259 0.999955209 0.980912249 1.010593141 1.083125186 1.039188634 45386205 narg unidentified bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.179578168 1.162581253 1.136423197 1.132832359 1.109325995 1.145522044 1.100710884 1.132287766 1.124061376 1.129686749 1.125821317 1.157264229 1.091076297 1.115261924 1.079632001 1.100542976 1.208294479 1.15718471 392594423 badh Coniophora puteana RWD-64-598 SS2 Organic Remediation Aromatics Other aromatics superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Boletales;family:Coniophoraceae;genus:Coniophora;species:Coniophora puteana; 1.172798606 1.154152042 1.152246612 1.18604244 1.141645781 1.169122811 1.15956675 1.184617854 1.12020214 1.12930743 1.149968927 1.151275238 1.127167923 1.081214736 1.095853239 1.109740702 1.187341284 1.146563785 299766958 ara uncultured fungus Carbon Cycling Carbon degradation Hemicellulose superkingdom:Eukaryota;kingdom:Fungi; 1.150998877 1.206526766 1.180120446 1.157725726 1.193072773 1.186753534 1.131264025 1.150279444 1.102450945 1.167165092 1.150753102 1.159884228 1.135858476 1.160108367 1.141617976 1.154477557 1.142845444 1.150455015 386849856 alkb Actinoplanes sp. SE50/110 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes; 1.0975065 1.086564376 1.083208165 1.107819531 1.083337558 1.131384719 1.035943087 1.086663354 1.110908958 1.113229052 1.04917821 1.117318312 1.025140141 1.049484878 1.027342716 1.026962825 1.10293726 1.091454177 381383720 nrfa Caldilinea aerophila DSM 14535 = NBRC 104270 Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria;phylum:Chloroflexi;class:Caldilineae;order:Caldilineales;family:Caldilineaceae;genus:Caldilinea;species:Caldilinea aerophila; 0.935141416 0.919886649 0.891332161 0.885025094 0.888831406 0.877682233 0.864153224 0.870948279 0.894307164 0.929407713 0.881970106 0.914246111 0.862966393 0.869190879 0.822681829 0.829195425 0.9388731 0.956279211 262204049 alkb Gordonia bronchialis DSM 43247 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia bronchialis; 1.244952701 1.191134967 1.164771018 1.220006034 1.171914897 1.216828195 1.13877535 1.164948685 1.179221113 1.156700594 1.179033293 1.176812301 1.175950024 1.143069273 1.135397271 1.164791116 1.204568773 1.183451048 326197577 limeh Gordonia neofelifaecis NRRL B-59395 Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia neofelifaecis; 0.914358635 0.854177394 0.871008381 0.840769203 0.892420963 0.857912963 0.91394478 0.881286374 0.868248204 0.869856632 0.847467421 0.841848908 0.839192683 0.802212833 0.879929967 0.849039448 167348802 ara Caulobacter sp. K31 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 0.799783439 0.790366448 0.815124825 323366208 nifh uncultured microorganism Nitrogen Nitrogen fixation NA 0.846124544 0.847340182 0.855803979 0.896260413 0.984167847 0.826645373 0.851080936 0.898427723 0.913064165 0.899430883 0.89481655 0.888319791 0.774219591 0.894063389 0.824946672 0.895007886 0.906165951 317968447 tktA Synechococcus sp. CB0205 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 0.993774511 0.990587083 0.99967541 1.017213065 0.986267412 0.996760331 0.971923999 0.907569504 1.004860968 0.982825223 0.947395951 0.958116219 0.953065244 0.941148029 0.93924181 0.958081835 1.015446075 1.003191737 73539625 nagg Ralstonia eutropha JMP134 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 1.022020377 0.998325439 1.018850101 1.012083883 1.016929472 0.981961408 0.99934075 0.990588755 1.002647697 0.984646343 1.022492307 1.015987856 0.989887028 0.935297737 0.933340771 0.968297822 1.028328576 1.006468291 170934871 PEP_synthase Thermoproteus neutrophilus V24Sta Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum neutrophilum; 1.147076193 1.088086122 1.093946968 1.157436681 1.061521717 1.086865696 1.07503449 1.099368894 1.130462806 1.04593659 1.097220712 1.077777424 1.065124299 1.042522547 1.02770144 1.076437529 1.139873817 1.066638658 145221320 badh Mycobacterium gilvum PYR-GCK Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 1.15442731 1.12479867 1.118277354 1.119700339 1.114911019 1.115782046 1.083989001 1.099500083 1.088865281 1.095915361 1.102366024 1.114638941 1.098668131 1.073658603 1.082585246 1.066624086 1.15694409 1.110750028 34332835 narg Chromobacterium violaceum ATCC 12472 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Chromobacterium;species:Chromobacterium violaceum; 1.427947761 1.401285146 1.383478938 1.398113705 1.377065769 1.403146081 1.363971879 1.392492552 1.39165223 1.380123554 1.358223587 1.392363489 1.361899248 1.34051488 1.357022579 1.375423922 1.413769383 1.359611484 16126643 hbh Caulobacter crescentus CB15 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter vibrioides; 1.162269651 1.139708108 1.136407967 1.122483033 1.083458764 1.129535376 1.099601437 1.085756655 1.111795708 1.124083645 1.10689997 1.12687326 1.090783443 1.083059784 1.074979951 1.10078218 1.138810026 1.141191765 354954744 mdlc Bradyrhizobium japonicum USDA 6 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 1.093174414 1.078737236 1.072278353 1.029891231 1.043079951 1.066044676 1.059418957 1.078419261 1.070594082 1.068419672 1.071128661 1.07125829 1.058987986 1.021310586 1.022454215 1.038143056 1.064964559 1.081155301 84690227 ppx Parvularcula bermudensis HTCC2503 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Parvularculales;family:Parvularculaceae;genus:Parvularcula;species:Parvularcula bermudensis; 0.908941733 0.907767925 0.898984238 0.892204265 0.920325475 0.905096561 0.880328428 0.915332112 0.93889272 0.898872029 0.888811604 0.889643481 0.884592862 0.887044334 0.876564695 0.903039978 0.853098585 0.911613994 294786454 pula Parascardovia denticolens F0305 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Parascardovia;species:Parascardovia denticolens; 1.121273596 1.069409402 1.042534438 1.048714917 1.073222792 1.13610063 1.044036177 1.051901423 1.082562817 1.140651936 1.074621859 1.051514997 1.078084606 1.14195919 1.085942189 1.067857801 1.128292705 1.10614662 91807172 nosz uncultured alpha proteobacterium Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 0.93089273 0.934603439 0.905945256 0.877736865 0.924352439 0.992941555 0.947838345 0.844929552 0.912667933 0.975772967 0.92786074 0.865788117 0.955951456 0.947623434 0.816007374 0.967916429 0.934970246 0.991178631 218759964 nifh Desulfatibacillum alkenivorans AK-01 Nitrogen Nitrogen fixation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfatibacillum;species:Desulfatibacillum alkenivorans; 0.830956223 0.814076111 0.818443109 0.838084481 0.817508279 0.827700678 0.800927396 0.847379287 0.804654508 0.817970328 0.875839545 0.859351414 0.832966588 289709233 amyA Mycobacterium tuberculosis GM 1503 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tuberculosis; 1.194111914 1.230716906 1.138982274 1.177753115 1.161948552 1.179835932 1.147071556 1.13304837 1.14681873 1.152083116 1.118492095 1.151564677 1.186011589 1.165234833 1.07835169 1.147035349 1.202075773 1.178056272 346922018 dehh109 Azospirillum amazonense Y2 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum amazonense; 1.185491615 1.160207977 1.173897358 1.206597301 1.1413438 1.222377266 1.139787328 1.156595238 1.15634872 1.14271832 1.146283638 1.15782119 1.132373731 1.14191435 1.129814415 1.181709556 1.242393716 1.168654666 308802856 mg_chelatase Ostreococcus tauri Secondary metabolism Pigments Chlorophyll superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Mamiellophyceae;order:Mamiellales;genus:Ostreococcus; 0.890243098 0.852713958 0.850663994 0.864439843 0.909256573 0.868381065 0.826029383 0.830857764 0.897048172 0.795780334 0.808753008 0.797420138 0.868778 0.826957921 0.874646752 0.921002139 110283398 xlnd Chelativorans sp. BNC1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 0.845078472 0.809452063 0.867636022 0.805003523 0.857583505 0.868930191 0.822223652 0.861574388 0.86693852 110824775 bphd Rhodococcus jostii RHA1 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 0.787060815 0.849403763 0.94283437 0.893771119 0.814480734 0.865981463 0.793901426 0.864405582 0.847881954 0.84389281 0.815583021 0.812868701 226185465 cellobiase Rhodococcus erythropolis PR4 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 0.884423607 0.883140921 0.863939418 0.885350417 0.864347919 0.892756267 0.88015454 0.882073204 0.830281674 0.905592628 0.876613655 0.905638583 0.86092562 0.897174059 0.931479266 0.845090705 0.865388512 0.923310791 329902074 catb Oxalobacteraceae bacterium IMCC9480 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae; 0.864246154 0.859307766 0.854221203 0.894941984 0.8558286 0.866374614 0.825879006 0.890215368 0.811355073 0.857478011 0.856594018 0.796311041 0.88120457 333390862 amyA Centipeda periodontii DSM 2778 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Centipeda;species:Centipeda periodontii; 1.216104912 1.174996279 1.189381493 1.199471315 1.139656071 1.197454145 1.147943436 1.170883457 1.176906819 1.169266505 1.150280869 1.16130821 1.132227284 1.144587248 1.085086385 1.135654849 1.222470564 1.163867623 371552171 amyA Streptomyces coelicoflavus ZG0656 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicoflavus; 1.15119041 1.181971526 1.136073387 1.152935754 1.127565728 1.14751184 1.088465432 1.127389505 1.140227081 1.095244357 1.145517916 1.112958962 1.066565675 1.091491206 1.053716629 1.07256921 1.153847317 1.171571789 332517123 amyA Ruminococcaceae bacterium D16 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae; 0.837338363 0.85268381 0.854762869 0.815799381 0.78994371 0.845352522 0.82508745 0.867606851 0.854952778 0.872571005 0.808410631 0.838754417 0.830950635 0.819643496 0.834248681 0.906177202 344041897 acetylglucosaminidase Streptomyces violaceusniger Tu 4113 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces violaceusniger; 1.048087957 1.042466275 1.015763442 1.079209869 1.021801521 1.041669097 1.024692651 1.0057257 1.045331011 1.01893194 1.00778031 1.04953578 1.013569678 1.006005586 0.973005767 1.006947521 1.035175633 1.045808998 116195526 pec_Cdeg Chaetomium globosum CBS 148.51 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 0.849128777 0.821304521 0.840843241 0.867394778 0.871712221 0.810388753 0.888226619 0.849480657 0.806312486 0.843679661 0.812326704 0.846156606 0.803883438 0.804041709 0.837646089 0.847091947 0.852325637 0.894619411 323528277 tktA Burkholderia sp. CCGE1001 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 1.330993839 1.311779704 1.292632257 1.295974431 1.278701113 1.335314146 1.291014407 1.291597531 1.281158185 1.269022681 1.291582997 1.288286373 1.281390126 1.26970689 1.27841977 1.303481696 1.314169368 1.279163671 339282941 mnp Polyporus brumalis Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Polyporaceae;genus:Polyporus; 1.00568041 0.969165136 1.028077452 1.048565688 0.94590126 0.967506406 0.944205661 0.978995592 1.010167018 0.959295529 0.962300661 1.004146162 0.96089837 0.957074242 0.976589958 0.964786875 1.011863917 0.966811917 374419546 chitinase Desulfosporosinus youngiae DSM 17734 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfosporosinus;species:Desulfosporosinus youngiae; 1.055336608 1.015471377 1.016091735 1.07655212 1.056807606 1.027834883 1.000472334 1.019820732 1.030718394 1.026629146 1.017550502 1.048395107 1.026925147 1.023646873 1.064588593 1.002589619 1.073358727 1.021944344 111148956 alkb Frankia alni ACN14a Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia;species:Frankia alni; 0.818148377 0.893960373 0.811268462 0.898692606 0.820888934 0.832795525 0.801317815 0.843068377 1.205677054 0.82013328 0.822707542 0.811419007 0.830969864 91784304 mer Burkholderia xenovorans LB400 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 1.197922413 1.141210486 1.131183864 1.177616564 1.119587975 1.151962246 1.115444628 1.142746393 1.17760433 1.154290055 1.1276438 1.165015599 1.105447296 1.114878862 1.126289018 1.123071898 1.170035929 1.134611754 78170004 pgk Synechococcus sp. CC9902 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 0.847736954 0.852266787 0.793058559 0.891253529 0.854788607 0.81425028 0.795523878 0.826383632 0.818148591 0.807166686 0.814502971 0.868467222 196176604 urec Microcoleus chthonoplastes PCC 7420 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Microcoleus;species:Microcoleus chthonoplastes; 0.95598458 0.956361149 0.934697147 0.959439768 0.919630945 0.936295343 0.923011037 0.928399432 0.959961939 0.910045021 0.900864101 0.895660902 0.855857941 0.859830155 0.778911078 0.851704514 0.911841832 0.899558935 262083603 xylj Gordonia bronchialis DSM 43247 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia bronchialis; 0.898356746 0.917137163 0.916952986 0.89016077 0.865086779 0.878189202 0.862233246 0.966553898 0.935136186 0.928368721 0.877381087 0.952734299 0.871092496 0.897055853 0.877399413 0.899397128 0.888787904 0.923846022 375102593 pcag Saccharomonospora cyanea NA-134 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora cyanea; 1.058952075 1.071985259 1.005792404 1.05871715 0.95697147 1.069373249 0.974669473 1.012273761 1.039579078 1.029510999 1.015303844 1.013475412 0.983468058 1.020816146 0.969641508 1.015006862 1.083428476 1.051267209 146278748 FBPase Rhodobacter sphaeroides ATCC 17025 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 1.038522271 1.040053 1.025894762 1.031367559 1.03342655 1.047020295 1.044509647 1.017896461 1.044192556 1.023621688 1.03478868 1.023097426 1.015451549 0.98304687 0.986085643 0.976225038 1.046423019 1.050398731 311696922 catechol_b Marinobacter adhaerens HP15 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter adhaerens; 0.874073229 0.862049552 0.932259484 0.849736003 0.807688346 0.842023049 0.877470797 0.814215879 0.856363654 0.949109978 0.812180988 0.818306953 0.848056393 0.878641535 0.849790465 348015099 mult_ring_12DiOx Nocardiopsis sp. FU40 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Nocardiopsis; 1.08753241 1.053071083 1.046561809 1.05108397 1.024622304 1.040633183 1.061773458 1.042809585 1.064124246 1.035954861 0.996249129 1.022129139 1.061565461 396928400 mult_ring_12DiOx Rhodococcus sp. JVH1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 1.177792886 1.204705415 1.176857823 1.172390857 1.179461071 1.213699455 1.153798143 1.170595817 1.131705515 1.15688373 1.158590031 1.166055753 1.165075765 1.169155892 1.167910031 1.167225962 1.182679382 1.185963736 158138877 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.769085722 0.844369106 0.812731918 0.829688811 0.801385035 0.811560137 304391967 FBPase Ahrensia sp. R2A130 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ahrensia; 0.786263432 0.837044513 0.789594086 0.796277112 0.804213721 0.820105448 0.837160182 0.785504358 0.840615463 379719776 glucoamylase Paenibacillus mucilaginosus 3016 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 0.773165704 0.830364032 148255472 nhh Bradyrhizobium sp. BTAi1 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.870750613 0.876862436 0.835327711 0.903222167 0.832274057 0.832885527 0.864002126 0.847663706 0.800539351 0.825339499 0.818021462 0.87587706 0.87282847 312795133 GAPDH_Calvin Burkholderia rhizoxinica HKI 454 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia rhizoxinica; 0.977320942 0.927649311 0.970401588 0.965382109 0.939655563 0.94542611 0.941157536 0.954849154 0.913808036 0.943350013 0.924186682 0.950187933 0.921057896 0.911489313 0.910769612 0.923327724 0.953449663 0.957619751 251829642 catechol Pseudomonas sp. YF1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.93474252 0.912374885 0.913665063 0.911590185 0.923388649 0.92362288 0.931158712 0.920253254 0.894723651 0.922981122 0.896562815 0.92291916 0.89745203 0.850536402 0.859771939 0.851026754 0.909411828 0.944611185 45188200 endopolygalacturonase_fungi Ashbya gossypii ATCC 10895 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Saccharomycetaceae;genus:Eremothecium;species:Eremothecium gossypii; 0.808372519 0.836295289 0.806993215 0.816585959 0.790561878 0.820835278 0.806768769 0.813295222 0.840039506 0.765625623 0.794771523 157407680 urec Methylobacterium populi BJ001 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium populi; 0.990378411 1.03241077 0.977997911 0.980668078 0.959235604 0.982510242 0.938634644 0.978322821 0.944711449 0.956219028 0.935343298 0.942851525 0.927272753 0.958930703 0.936714762 0.92816997 1.001411692 0.991570501 374995818 dsrB Desulfosporosinus orientis DSM 765 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfosporosinus;species:Desulfosporosinus orientis; 1.084829403 0.919307051 0.964026551 1.015269667 0.961930266 0.928077146 0.933960282 0.965997732 0.967119361 0.953639712 0.94907062 0.996602869 0.957266605 0.941547073 0.899491082 0.889813064 0.951644269 0.905072679 390618611 amyA Mycobacterium chubuense NBB4 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium chubuense; 1.027381413 1.015039658 0.988953019 0.995266719 0.949231837 1.055792902 0.993917616 1.007102375 1.002621024 1.012343931 0.978658785 0.977407741 0.964796752 1.020904088 0.915211323 0.952124702 0.985931868 1.02888163 152984294 cellobiase Pseudomonas aeruginosa PA7 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 0.916222939 1.024522685 0.944934456 0.917942208 0.954005589 1.015279493 0.918194524 0.921678794 0.866044236 1.017508583 0.895053107 0.970038883 0.929023785 0.923508064 0.882138228 1.015774479 0.947836754 0.977630885 91720252 fthfs Psychrobacter sp. PRwf-1 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter; 1.118598691 1.106737452 1.080156904 1.128837024 1.107092914 1.029056775 1.062779753 1.068518997 1.095888828 1.091243546 1.089429363 1.089508782 1.067881072 1.033789937 0.971017045 1.053438662 1.08132188 1.045307427 162072858 dsrB uncultured bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.905043951 0.894287492 0.919174109 0.975038379 0.908321529 0.911946006 0.981467264 1.005141649 0.98990636 0.961010442 0.89900103 0.95523753 0.9152883 0.89755037 0.938154651 0.981911524 0.933475166 0.928149115 255708130 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.867866424 0.899484616 0.886141252 0.869295451 0.811413219 0.84047687 0.803960006 0.839439532 0.868601838 0.884705155 0.84698594 0.854400447 0.826839548 0.8510227 0.806875021 0.880909646 0.918623363 119951520 mer Arthrobacter aurescens TC1 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter aurescens; 1.166151571 1.133548959 1.173312146 1.138911285 1.150527616 1.197777195 1.13996855 1.136900351 1.139664022 1.138841841 1.161633369 1.147007374 1.106736271 1.117321526 1.163586984 1.114122419 1.182912429 1.149167917 153962624 sqr uncultured bacterium Sulfur Sulfide Oxidation NA superkingdom:Bacteria; 0.992869571 1.010207486 0.973776416 0.97653132 0.927541194 0.97878816 0.940858044 0.980874183 0.964712652 0.943388515 0.970986609 0.984216595 0.914419058 0.950078786 0.88484066 0.961197175 0.994783203 0.985387079 207083744 SoxB Comamonas sp. S23 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas; 1.26498888 1.282042625 1.23871241 1.257953713 1.247452273 1.284350897 1.236991225 1.243524973 1.236717314 1.245581207 1.284993956 1.266804335 1.240130833 1.237132412 1.221564342 1.243899788 1.267655143 1.240974042 24418998 endochitinase Streptomyces coelicolor A3(2) Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 0.841115732 0.868697595 0.875391399 0.886769949 0.879354172 0.821393378 0.799518604 0.827136371 0.864650896 0.812142823 0.837267924 0.857990775 0.872938036 188583265 arsc Methylobacterium populi BJ001 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium populi; 1.110825271 1.150260573 1.095153404 1.074038379 1.113673993 1.157511777 1.088546519 1.086711671 1.060165605 1.108568741 1.084938869 1.082094723 1.099412481 1.105387987 1.067049249 1.092862999 1.087321079 1.087778576 294476427 GAPDH_Calvin Rhodobacter capsulatus SB 1003 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter capsulatus; 1.133236152 1.098616581 1.092922032 1.104800463 1.092528228 1.134476506 1.072856286 1.061966145 1.100681434 1.106347192 1.08954931 1.092792368 1.097356355 1.102789605 1.06716602 1.091775752 1.112396428 1.104546352 152985914 ppk Pseudomonas aeruginosa PA7 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 1.004669559 1.071362732 0.997804157 1.057877952 1.026561774 1.010922392 0.998093246 1.012066403 1.001476632 1.021595552 0.927280252 1.020419812 0.99538032 0.988293046 0.985679902 0.979665471 0.998715072 1.014661573 326953729 linb Pseudonocardia dioxanivorans CB1190 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Pseudonocardia;species:Pseudonocardia dioxanivorans; 1.184118833 1.197652361 1.184441582 1.167950554 1.155311934 1.207643536 1.168641416 1.172326001 1.185024699 1.184798049 1.156935866 1.206668315 1.138032047 1.162328555 1.133616888 1.160431556 1.173806188 1.188395161 339608544 xylanase Prevotella dentalis DSM 3688 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella dentalis; 0.808722834 0.849725885 0.820807052 0.863566912 0.914024406 0.814885728 0.787209565 0.866662188 0.853445504 0.885887947 0.83282632 0.885744163 0.845136483 0.835347469 61807988 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.886327456 0.831057876 0.845255939 0.813789265 0.817117302 0.855203035 0.848855706 0.854461377 0.859893093 0.821254074 0.809541392 0.906587159 0.821456274 0.859804157 0.833788146 0.805624807 0.887263259 0.870115653 392402270 amyA Turneriella parva DSM 21527 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Leptospiraceae;genus:Turneriella;species:Turneriella parva; 1.373118614 1.364777561 1.351437332 1.370997078 1.333406135 1.34830728 1.334769247 1.364804023 1.357295163 1.320356118 1.340697706 1.358635864 1.312591107 1.30660637 1.331898153 1.331852314 1.339690353 1.319091232 94471239 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.046227317 1.031412526 1.058515637 1.002863196 1.057184905 1.154401401 1.026027905 1.049739625 1.032055678 1.034750584 1.040148313 1.022245214 1.020364777 0.981788539 0.97539872 0.974579656 1.074566453 1.041057141 118570036 bphF1 Mycobacterium ulcerans Agy99 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium ulcerans; 0.854945694 0.837212231 0.814240543 0.827553885 0.821046784 0.815638129 0.84366324 0.801060151 0.795784421 0.815513476 0.849763368 0.812073952 0.831530899 0.821482488 289662252 endoglucanase Xanthomonas campestris pv. vasculorum NCPPB 702 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas vasicola; 0.750491348 0.812350901 0.822572425 0.788574723 0.781661174 0.856931152 0.757919311 212704750 ppx Desulfovibrio piger ATCC 29098 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio piger; 0.793305103 0.84688319 0.785172198 0.813640957 0.807798504 0.845827477 156448630 chnb Methylobacterium chloromethanicum CM4 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium chloromethanicum; 1.041943453 1.044201345 0.994989133 1.071577909 0.973885481 1.049076057 0.992422781 1.047545095 1.070002757 1.011222953 0.97334431 1.038034086 0.951637597 0.995011276 0.958639252 1.001972709 1.020208405 0.976278751 357939658 tfth Burkholderia sp. YI23 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 0.841749966 0.886354471 0.819912955 0.87690986 0.870058022 0.906570529 0.889644667 0.8905967 0.866421327 0.882516966 0.840911804 0.908451157 0.816067292 0.807436358 0.853771958 0.829864114 0.885092675 340527022 RgaE Amycolatopsis mediterranei S699 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 1.094941397 1.090754359 1.041557106 1.055345381 1.054319215 1.025786759 1.016995277 1.014872364 1.017451577 1.057426468 1.020115981 1.023184168 0.940374982 0.969807393 0.998799959 0.948318385 1.057287956 1.098290789 372275083 cysJ Pantoea sp. SL1_M5 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 1.123310092 1.123940403 1.128292597 1.080225023 1.100442122 1.117101525 1.165689316 1.157742682 1.048715764 1.135644369 1.099529101 1.080606764 1.052644431 1.12675776 1.130054263 1.214768674 1.116266515 146192095 pcpe Bradyrhizobium sp. ORS278 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 1.067072782 1.075105715 1.05888893 1.053797439 1.0388063 1.074138241 1.033542851 1.063436205 1.049620023 1.061817663 1.068430439 1.053701264 1.024754587 1.041180609 0.977759916 1.039320469 1.057850087 1.07917597 121606034 nagg Polaromonas naphthalenivorans CJ2 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 1.102283157 1.032282313 1.053680273 1.042310098 1.070120697 1.04869836 1.038710269 1.041080517 1.062267619 1.030608417 1.033617677 1.036997085 1.044141214 0.992049749 0.93256689 0.990459431 1.03418083 1.043001552 284164838 urec Haloterrigena turkmenica DSM 5511 Nitrogen Ammonification NA superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloterrigena;species:Haloterrigena turkmenica; 1.047292587 1.019331353 1.016324629 1.024233944 1.039766949 1.014517511 1.030154413 1.016615612 0.99858633 1.034228964 1.017658049 1.02408835 0.989326231 0.967017078 0.941867442 0.979024329 1.068534462 1.071489193 126739596 GAPDH_Calvin Roseobacter sp. SK209-2-6 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 0.893928191 0.840372222 0.820187609 0.939925469 0.844317754 0.776870646 0.857477769 0.878452599 0.851932534 0.828122466 0.906896253 0.875635447 0.87412028 0.817581484 0.868580467 0.815609113 21220949 nirb Streptomyces coelicolor A3(2) Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 1.138746219 1.13665663 1.057164853 1.115237693 1.080644833 1.10314311 1.072543226 1.106178413 1.092141745 1.079117353 1.111166454 1.119969401 1.06001406 1.059048156 1.080170081 1.080233451 1.098971408 1.053540624 47680323 rubisco uncultured bacterium Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria; 0.875380898 0.858983274 0.839803598 0.840494508 0.850056319 0.84344858 0.871787228 0.865598041 0.793252582 0.827485303 0.810500131 0.835238705 0.85415931 289558063 amyA Micrococcus luteus SK58 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Micrococcus;species:Micrococcus luteus; 1.164623773 1.106637949 1.091443374 1.14565353 1.059787907 1.124312357 1.067742635 1.090637231 1.111591126 1.119800035 1.070570867 1.082953704 1.122151077 1.084395896 1.050982819 1.08395533 1.116878495 1.092017674 154247448 FBPase Xanthobacter autotrophicus Py2 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 0.927017087 0.955671805 0.849173633 0.942784494 0.895320419 0.905016043 0.887623017 0.921763132 0.912837761 0.858259848 0.878177493 0.873033533 0.893040762 0.90926949 0.889571358 0.927404673 0.935020152 335436377 ara Halorhabdus tiamatea SARL4B Carbon Cycling Carbon degradation Hemicellulose superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halorhabdus;species:Halorhabdus tiamatea; 0.949425698 0.972898094 0.906574104 0.959260436 0.928929534 0.868809163 0.907182499 0.962844774 0.945601628 0.903867368 0.938901548 0.96090443 1.112835579 0.833812242 0.813369193 0.901469807 0.953116168 0.937193263 158112477 amyA Frankia sp. EAN1pec Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 0.810202965 0.873080087 0.823925262 0.83744107 0.842477027 0.876981391 0.807384897 0.781962817 0.824660348 0.865854238 0.79878054 0.881433665 0.845809148 27350592 hbh Bradyrhizobium japonicum USDA 110 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium diazoefficiens; 1.130962602 1.090997019 1.106057134 1.117409666 1.01546439 1.088481966 1.033603386 1.055746886 1.095126104 1.080274554 1.065762747 1.058054274 1.019571558 1.049929761 1.00242522 1.023595274 1.112147833 1.111681179 377525243 ben_bcla Gordonia otitidis NBRC 100426 virulence NA NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia otitidis; 1.073595821 1.091832795 1.03549519 1.100470366 1.057557606 1.087246419 1.059524035 1.122380856 1.07235553 1.101693633 1.002484846 1.067541025 1.061818703 1.114643559 1.006318247 1.052097966 1.101096049 1.075918756 22299223 ppx Thermosynechococcus elongatus BP-1 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Thermosynechococcus;species:Thermosynechococcus elongatus; 0.802255364 0.875742022 0.893496148 0.818975502 0.887386116 0.8889701 0.855133841 0.848840596 0.889772242 0.872473308 0.850077611 0.851346082 0.826776741 0.795240548 0.90653331 0.938662662 164508588 nosz uncultured organism Nitrogen Denitrification NA 1.022414599 1.017141073 1.042588088 1.056936279 0.980356147 0.995094003 0.974822373 1.022552867 1.033432338 0.989838292 1.022883754 1.019783926 1.013660027 0.966233939 0.982656319 1.027638913 1.009853837 1.034688819 359767559 arsc Gordonia polyisoprenivorans NBRC 16320 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia polyisoprenivorans; 0.955008607 0.979839244 0.949334426 0.950775177 0.966887996 0.975569825 0.974768753 0.968309376 0.995513204 0.982303505 0.949756851 0.95483126 0.971769321 0.907518588 0.900293637 0.91487186 0.946220963 0.973361517 325923531 ara Xanthomonas gardneri ATCC 19865 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas gardneri; 0.809214178 0.824417677 319743069 fccab Lautropia mirabilis ATCC 51599 Sulfur Sulfide Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Lautropia;species:Lautropia mirabilis; 0.949626706 0.962784844 0.95374258 0.962294217 0.902057758 0.947919533 0.865306874 0.925710438 0.942532096 0.950182924 0.893710257 0.916762196 0.842321901 0.889127121 0.844804516 0.879127544 0.929418525 0.944398683 139437218 ppk Collinsella aerofaciens ATCC 25986 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Collinsella;species:Collinsella aerofaciens; 1.302767437 1.332211315 1.283881199 1.269552087 1.278524002 1.361807941 1.289061683 1.26568856 1.280441903 1.298696236 1.280280769 1.283870097 1.254898618 1.284789106 1.269816313 1.302070557 1.301755875 1.316960074 386326777 xyla Serratia sp. AS13 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia; 1.269048511 1.22892531 1.229245994 1.198040147 1.240806112 1.291459793 1.218742137 1.2530199 1.245215206 1.226040842 1.244624849 1.197823721 1.208476418 1.200991039 1.175403263 1.216738397 1.256576151 1.213625232 86284436 pcag Rhizobium etli CFN 42 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 0.854933075 0.889062056 0.955891574 0.953640458 0.919099991 0.869839194 0.926111668 0.937610536 1.095549983 0.880129198 0.879484902 0.888291353 0.890977156 0.827605998 0.920588363 0.915829438 0.986958075 381397906 ppx Microbacterium laevaniformans OR221 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Microbacterium;species:Microbacterium laevaniformans; 1.235065636 1.170625821 1.126429273 1.178336292 1.1289357 1.190715252 1.126977704 1.178918774 1.178577183 1.151042099 1.155040945 1.168828083 1.130517522 1.158861006 1.129183022 1.165648325 1.20019016 1.147293351 147847664 GAPDH_Calvin Synechococcus sp. WH 7803 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 1.208947465 1.221712677 1.204973486 1.181134846 1.184306043 1.205445229 1.154910017 1.165664592 1.156192298 1.186424411 1.1918143 1.184859231 1.187440973 1.179667084 1.173909289 1.174342957 1.187754214 1.196537862 322419510 ppx Geobacter sp. M18 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 0.861246619 0.901369806 0.919785278 0.912108957 0.879316738 0.890853558 0.882560748 0.877919561 0.895595245 0.8825855 0.866032251 0.846527106 0.815044692 0.792889122 0.861538196 0.871955847 157704432 mult_ring_12DiOx Sphingomonas sp. LB126 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 0.935469215 0.932840131 0.929918545 0.986370866 0.896124636 0.940907358 0.889925584 0.922321155 0.930144775 0.898506806 0.874635105 0.92660317 0.905662936 0.895781123 0.883538162 0.895347261 0.995050683 0.899434093 322398205 TIM Methylocystis sp. ATCC 49242 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylocystaceae;genus:Methylocystis; 1.002459972 1.045788464 1.076179077 1.069968378 1.047214334 1.033593738 1.062869609 1.037207376 0.996893948 1.025576628 1.073552673 1.062463952 1.052468909 1.00724816 0.997390389 1.031182224 1.027543439 1.007364207 217970679 ppx Thauera sp. MZ1T Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Thauera; 0.878157085 0.961230569 0.822828765 0.841778311 0.861318855 0.906288783 0.824054485 0.874865143 0.907868094 0.848916315 0.880274964 0.875030493 0.843622269 0.838291422 0.859213545 0.921312324 0.958181689 358063379 ccmL Clostridium hathewayi WAL-18680 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hathewayi; 0.889825836 0.935985608 0.866501518 0.903105402 0.817669202 0.868689878 0.828017842 0.849028337 0.861102763 0.895439394 0.859884966 0.85122528 0.858436256 0.871431159 0.844306237 0.901137135 0.896397508 313505760 chitinase uncultured microorganism Carbon Cycling Carbon degradation Chitin 1.064085812 1.079916309 0.965394283 1.030058778 1.015638455 1.082366525 1.032035597 1.014023038 1.018444424 1.049860386 1.016135335 1.048757159 1.020958297 1.027040928 1.00513734 1.04785572 1.013429006 1.047289728 238059513 endoglucanase Micromonospora sp. ATCC 39149 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Micromonospora; 1.242120862 1.213365765 1.192582388 1.226525245 1.191095151 1.191750559 1.184579586 1.207398893 1.183944824 1.17877236 1.211568781 1.218017268 1.192748573 1.156449232 1.185272649 1.168455901 1.205121714 1.168281474 329119978 gdh Neisseria bacilliformis ATCC BAA-1200 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria bacilliformis; 1.025758765 1.006607486 0.99204854 0.984053313 0.983917733 0.99365026 0.981108749 0.971265886 0.983003753 0.996905423 0.996832835 0.987227026 0.99363383 0.982453745 0.971047394 0.970870608 0.990886097 1.000199286 388007327 fosa Pseudomonas synxantha BG33R Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas synxantha; 1.098964398 1.097204661 1.045126773 1.077134379 1.065604494 1.073363893 1.039417407 1.040155734 1.062741542 1.047059711 1.045784121 1.080155026 1.046208529 1.036846218 1.039652566 1.034845324 1.08905432 1.080847725 291005844 chitinase Saccharopolyspora erythraea NRRL 2338 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 1.063354226 1.055382071 1.059453745 1.068675432 1.045085463 1.074856244 1.044445328 1.033181575 1.05310339 1.042723239 1.015157732 1.02853315 1.032653415 1.000843381 0.976512088 1.006337965 1.083274812 1.05032603 319762524 mer Alicycliphilus denitrificans BC Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Alicycliphilus;species:Alicycliphilus denitrificans; 0.971430334 0.925291237 0.951158475 0.95025387 0.928064239 0.959242864 0.956943703 1.007349061 0.873110451 0.897050535 0.920122474 0.948596231 0.934745237 0.832627194 0.887887382 0.89024003 0.943433791 0.937795339 343782873 nosz Haloarcula hispanica ATCC 33960 Nitrogen Denitrification NA superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloarcula;species:Haloarcula hispanica; 1.108756778 1.088068742 1.10802793 1.072275123 1.015234144 1.069347974 0.99197259 1.035124732 1.075088238 1.049510586 1.075159077 1.017454726 1.036699562 1.017223442 1.00483366 1.039875582 1.0909565 1.06724088 398859428 bend Pseudomonas sp. GM79 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 1.16488791 1.136166651 1.137974554 1.135773715 1.129396577 1.144665589 1.114236742 1.132245697 1.088949156 1.10869416 1.118268834 1.098325551 1.065887767 1.042474771 1.078982231 1.048587372 1.113811175 1.147693643 328812491 amyA Verrucosispora maris AB-18-032 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Verrucosispora;species:Verrucosispora maris; 0.905056135 0.963487134 0.936406194 0.958877662 0.944981807 0.926869008 0.907817374 0.914213087 0.946598187 0.913937941 0.93504296 0.891003636 0.856311617 0.883026991 0.948885833 0.967146967 111017352 nira Rhodococcus jostii RHA1 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 0.994075623 0.947993668 0.938545204 1.004385576 0.951593898 0.906378527 0.938085502 0.92778743 0.965304004 0.925416008 0.934346161 0.957974626 0.902050366 0.918216978 0.907549623 0.908587619 1.015933408 0.957285982 154499863 vdh Bacteroides capillosus ATCC 29799 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;genus:Pseudoflavonifractor;species:Pseudoflavonifractor capillosus; 0.899461527 0.94724909 0.897294473 0.916175207 0.884399878 0.878984572 0.896559285 0.872643284 0.896558254 0.962920079 0.898078266 0.903037852 0.877645883 0.923486969 0.821166105 0.833617437 0.896740564 0.941676894 75676104 arsc Nitrobacter winogradskyi Nb-255 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter winogradskyi; 1.410414304 1.369183321 1.364093425 1.377790638 1.349276836 1.376628237 1.331929577 1.369272026 1.346963082 1.352726517 1.349737265 1.366296954 1.313348244 1.34080566 1.340515844 1.336418214 1.377580084 1.341430426 881939 norb Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 1.098739404 1.075788859 1.068699132 1.050476931 1.072171659 1.086792298 1.055605898 1.046090893 1.066517067 1.064088529 1.085614202 1.09218489 1.049888574 1.043774041 1.041785769 1.036315753 1.096758826 1.064281143 262182603 arsc Corynebacterium aurimucosum ATCC 700975 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium aurimucosum; 0.808345035 0.797022241 0.841803103 0.79026633 0.799983711 0.825248646 256397205 acetylglucosaminidase Catenulispora acidiphila DSM 44928 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 0.819927892 0.846335557 0.80059153 0.814674721 0.862272689 0.811366865 0.797382728 0.874123371 0.838608561 0.821533984 0.813519673 0.833300369 41222509 nasa Haloferax mediterranei Nitrogen Assimilatory N reduction NA superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloferax; 0.932378897 0.907720347 0.911181269 0.927461007 0.864643941 0.928498205 0.860526697 0.935820699 0.91667563 0.933992384 0.898010982 0.924756019 0.888504735 0.915897507 0.885264911 0.888203907 0.923588422 0.931479968 336276480 rgl Sordaria macrospora k-hell Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Sordaria;species:Sordaria macrospora; 0.834131335 0.849547768 0.799746559 0.890272023 0.881051924 0.795980863 0.824011398 0.842916101 0.892421182 0.754876144 0.882326749 291417110 amyA Oribacterium sp. oral taxon 078 str. F0262 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Oribacterium;species:Oribacterium sp. oral taxon 078; 0.784420236 0.87552089 0.827312169 0.857422472 0.830072877 0.822347155 0.830219566 0.822678061 0.789138189 0.811348305 0.80254998 0.881992311 0.796526289 109290314 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.043158832 1.04301741 1.04492955 1.033744088 1.026174098 1.034416829 1.040968653 1.027112131 1.045823139 1.059036754 1.049942527 1.052798376 1.013477638 0.999942431 0.976398275 1.028028686 1.067755269 1.076137548 359361650 one_ring_23diox Achromobacter arsenitoxydans SY8 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter;species:Achromobacter arsenitoxydans; 0.989385887 0.988947998 0.953731717 0.966338377 1.000465788 1.02967372 1.008332809 0.986340238 0.973482969 0.968272179 0.959961938 1.035614552 0.877782238 1.005821261 0.885558118 0.888205723 0.951929088 0.948134459 147886204 phenol_oxidase uncultured bacterium Carbon Cycling Carbon degradation Lignin superkingdom:Bacteria; 1.040537263 1.050292544 1.00144224 1.068074028 1.019948199 1.034671779 0.999329737 1.053827831 1.04184329 1.031014009 0.97338985 1.042332228 0.970039732 1.002713293 0.954097 0.979976174 1.051755654 1.062367736 27350589 pcag Bradyrhizobium japonicum USDA 110 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 1.070871604 1.088162262 1.058043768 1.061686435 1.041301391 1.086072451 1.06743756 1.080273085 1.058527068 1.04866927 1.047699687 1.061228804 1.04997791 1.063578033 1.068598867 1.080317297 1.069895503 1.056249108 116226308 RgaE Candidatus Solibacter usitatus Ellin6076 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 1.313169209 1.259099289 1.205362739 1.243172705 1.202816097 1.270784288 1.173778443 1.225968546 1.216760266 1.227798871 1.202970183 1.213005682 1.177559243 1.193831669 1.167730485 1.202847214 1.248110172 1.246707168 219719342 arsc Stenotrophomonas sp. SKA14 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas; 1.209356363 1.172969179 1.186080477 1.16901597 1.134366969 1.211261693 1.141023763 1.170041188 1.172463829 1.158944243 1.145567055 1.175255281 1.152334666 1.155668308 1.171998096 1.157083988 1.199098949 1.161249917 329849923 terc Asticcacaulis biprosthecum C19 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis biprosthecium; 0.97378425 1.058868056 1.038117187 1.03208555 1.042903847 1.134840936 1.031320649 1.013006088 1.010203793 1.09394437 1.048080272 1.015352162 1.073965351 1.072078094 1.004881001 1.048683265 1.012315052 1.062389025 266631213 mcra uncultured methanogenic archaeon Carbon Cycling Methane Methanogenesis superkingdom:Archaea;phylum:Euryarchaeota; 0.842028795 0.961378638 0.838738576 0.881684794 0.900037385 0.849632595 0.806708289 0.826286831 0.853463444 0.948362236 0.840245968 0.871539214 0.868120565 0.919465635 0.826859326 0.847132443 0.895933676 261857091 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.914746676 1.002273295 0.955616938 0.953592924 0.949282863 1.000554906 0.933891844 0.946253709 0.931578382 0.968709403 0.933635092 0.965503367 0.940972333 0.975694334 0.985134163 1.006522554 1.009642088 0.967921473 312112807 FBPase Rhodomicrobium vannielii ATCC 17100 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Rhodomicrobium;species:Rhodomicrobium vannielii; 0.91306212 0.918511288 0.919146195 0.909425385 0.907676172 0.919257764 0.903196587 0.889417956 0.911600737 0.887105073 0.920018277 0.902527942 0.833525798 0.889522305 0.816725859 0.880828576 0.914421562 0.910848362 375289747 amyA Corynebacterium diphtheriae 241 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium diphtheriae; 1.082528615 1.060072051 1.064142178 1.11330521 1.031606223 1.065908208 1.039160419 1.090743856 1.070914341 1.05339367 1.01678946 1.069570459 1.029252488 0.989828207 1.027354169 1.026996689 1.107305054 1.062868983 115607457 alkb uncultured bacterium Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria; 0.957538271 0.934356707 0.929672459 0.913628962 0.878201683 0.874358716 0.849105814 0.973133645 0.891823626 0.922759353 0.906002632 0.866602145 0.848968183 0.952403988 0.954777405 0.982202335 0.955588733 156232243 mct Roseiflexus castenholzii DSM 13941 Carbon Cycling Carbon fixation 3-hydroxypropionate bicycle superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus;species:Roseiflexus castenholzii; 1.457180965 1.415382233 1.421766973 1.440718812 1.407842264 1.449155506 1.414118587 1.43498304 1.411232869 1.399229957 1.416064297 1.418349919 1.391772532 1.37120732 1.390013576 1.414773619 1.452048351 1.391193933 86139088 hbh Roseobacter sp. MED193 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 0.771911763 0.802563349 0.820464033 0.84014602 0.85091081 0.928726642 0.821606605 0.847210994 0.850511482 0.795765714 0.801679809 0.829889467 388274878 ppx Pseudomonas sp. M47T1 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.898905093 0.961107174 0.901959443 0.856578978 0.90613154 0.958260327 0.878833871 0.870330984 0.811485293 0.954611732 0.935679462 0.909793818 0.888115178 0.908813619 0.898565621 0.872381677 0.887474032 0.938438626 194342142 urec Streptomyces sp. Mg1 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 0.948840206 0.986981023 0.915949368 0.919750211 0.91790677 0.951565608 0.898795935 0.890351764 0.931347028 0.927891503 0.884424401 0.885162412 0.895628163 0.867477381 0.90502053 0.880705915 0.975723877 0.998690757 170776765 tehb Leptothrix cholodnii SP-6 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Leptothrix;species:Leptothrix cholodnii; 1.06441564 1.021168563 1.001609676 1.060474158 1.036365187 1.051687468 1.034558284 1.010797248 1.007651153 0.975579536 0.973846645 1.003146061 1.046125373 0.973042952 0.977370596 0.976543588 1.049371831 1.028745078 347539559 bend Pseudogulbenkiania sp. NH8B Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Pseudogulbenkiania; 1.162252797 1.212794208 1.167031496 1.19008544 1.20560379 1.238130425 1.192667548 1.194156636 1.162021045 1.232011878 1.223808401 1.221723927 1.187906711 1.200480914 1.150263538 1.198037734 1.16237918 1.193947669 260433188 nhh Silicibacter lacuscaerulensis ITI-1157 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria lacuscaerulensis; 0.936736167 0.889478101 0.917189055 0.866313893 0.911136113 0.949197583 0.943330514 0.909551468 0.879620219 0.918122624 0.902551544 0.879179538 0.864834095 0.814818628 0.903608367 0.883064233 359738907 chitinase Saccharomonospora azurea SZMC 14600 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora azurea; 0.785442442 0.842456746 0.806080493 0.842694688 0.825223434 0.820831551 0.858828844 0.838961156 0.84949888 0.793380823 0.858873174 407311071 alkb Nocardia brasiliensis ATCC 700358 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia brasiliensis; 0.921040268 0.868822767 0.901325735 0.906385122 0.904983497 0.914976347 0.896113397 0.887135662 0.901528885 0.914919755 0.906909034 0.911790813 0.845569768 0.855187863 0.845420892 0.825890065 0.887579875 0.881336217 227822313 xylanase Sinorhizobium fredii NGR234 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium fredii; 0.776901255 0.804479187 0.776870237 0.834579077 146191410 dehh109 Bradyrhizobium sp. ORS278 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.836295183 0.815145707 0.801861385 0.878449372 0.851949226 0.87033082 0.807772004 0.852458154 0.847544278 0.81198757 0.860812228 0.845621978 13249563 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.786635465 0.788353758 0.811790897 0.791598343 0.781253318 0.774414262 0.852508708 255940650 phytase Penicillium chrysogenum Wisconsin 54-1255 Phosphorus Phytic acid hydrolysis NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 1.020149093 1.037329826 0.975608748 1.037069635 0.995252496 1.023750507 0.953162683 1.012231529 1.023526005 0.989886167 0.979764371 1.027924051 0.962061877 0.922932962 0.938596027 0.987246005 1.004266579 0.953576521 68510314 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.916999562 0.892861178 0.939314199 0.971552911 0.866145862 0.929911324 0.91762708 0.974976901 0.989580567 0.921729198 0.87919632 0.85941675 0.846848253 0.906577822 0.896860025 0.912040618 1.001856179 0.944931818 56798549 catechol_b uncultured bacterium Organic Remediation Aromatics Other aromatics superkingdom:Bacteria; 0.850300303 0.847422835 0.859689066 0.857135259 0.900626349 0.87658083 0.833802229 0.851601336 0.904609202 0.825797234 0.824914527 0.891526882 0.88721514 0.797427732 0.837875067 0.949451758 19548129 nirs Azoarcus evansii Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 1.005665869 1.007839192 1.003318219 1.016686186 0.996887637 1.040448326 1.003657346 0.967766262 1.024682757 1.028790346 0.991666367 0.984392785 0.978218966 1.003433724 0.940222657 0.984953755 1.001979012 1.037670435 198260474 CsoS1_CcmK Verrucomicrobiae bacterium DG1235 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales; 0.824055846 0.856090623 0.812419776 0.802143192 0.852346256 0.8142031 0.837965001 0.815919724 373549236 cutinase Mycobacterium tusciae JS617 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tusciae; 1.02235411 1.005356626 0.950263608 0.990711958 0.933846235 0.997306429 0.97832844 1.018846821 1.017271524 1.000534291 0.913091132 0.940704754 0.860536845 0.971678546 0.869888588 0.959200904 1.023944255 0.977212517 170121561 nirb Escherichia albertii TW07627 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia albertii; 0.898036771 0.90995039 0.910200643 0.871006965 0.884271816 0.837773271 0.906277594 0.888830041 0.900301903 0.902606928 0.809774678 0.899772545 0.892466861 328953290 arsc Desulfobacca acetoxidans DSM 11109 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophaceae;genus:Desulfobacca;species:Desulfobacca acetoxidans; 0.911073978 1.035167521 0.95689228 0.870240154 0.892644359 0.914698993 0.860128515 0.875820814 0.920346438 0.896213755 0.946650834 0.845109197 0.843802163 0.8980675 0.86974726 0.808858042 0.92863797 0.970550155 326551046 xylanase Sphingobacterium sp. 21 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Sphingobacterium; 1.035756013 1.00282653 0.977834433 1.001483634 0.966753634 1.004745947 0.929420828 1.015050866 1.006429629 0.962553831 0.99334604 0.999091125 0.952330471 0.959883181 0.932462385 0.963068141 1.022500319 1.010772054 336105112 amyA Cellvibrio] gilvus ATCC 13127 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas;species:[Cellvibrio] gilvus; 0.95733697 0.932149099 0.948052832 0.982137431 0.964765649 0.979931857 0.929168444 0.941338617 0.976979687 0.933120697 0.968718557 0.951299071 0.916322123 0.908819602 0.969771466 0.945042474 0.995480134 0.947173121 260223127 gdh Curvibacter putative symbiont of Hydra magnipapillata Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Curvibacter; 0.847537461 0.818477306 0.871297546 0.830699037 0.854366978 0.783302262 0.841855305 0.825583193 0.888122758 0.847787818 0.85541235 0.755201883 0.807550711 0.844246048 0.860146039 291369285 phenol_oxidase Haloferax volcanii DS2 Carbon Cycling Carbon degradation Lignin superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloferax;species:Haloferax volcanii; 0.851313169 0.849272511 0.880096465 0.858079932 0.864589853 0.920293212 0.848915144 0.872506631 0.860866867 0.838025593 0.868271877 0.836845298 0.872623498 0.878524582 271968939 acetylglucosaminidase Streptosporangium roseum DSM 43021 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 1.020680028 0.970541014 0.910387582 0.945846243 0.923294206 0.920703434 0.887943674 0.956358094 0.945477096 0.914428973 0.906178376 0.966284954 0.917317095 0.889981157 0.840427355 0.923430278 0.962832692 0.963499413 162568589 aoxb uncultured bacterium Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 0.81582299 0.822332272 0.836422147 0.864410115 0.823087446 0.811455926 0.865721428 0.843827705 0.824116238 0.786850763 0.868855279 0.791146537 0.828918596 0.850455289 0.856102292 306818486 nitro Mobiluncus mulieris ATCC 35239 Organic Remediation Others NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Mobiluncus;species:Mobiluncus mulieris; 0.794590997 0.837592111 0.786585311 0.77834906 0.812039709 0.793896002 72117504 mer Ralstonia eutropha JMP134 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 0.98175163 0.981101039 0.958237562 0.945907962 0.908118824 1.004121113 0.920669691 0.904668878 0.900070421 0.937220002 0.954277587 0.955266969 0.939760001 0.935462663 0.874100174 0.957468769 0.959141718 0.975199302 225571154 cda Clostridium hylemonae DSM 15053 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hylemonae; 0.891091777 0.823637425 0.910278391 0.881062223 0.88803369 0.820590238 0.913301048 0.833383101 0.85906882 0.960550178 0.959271067 0.918860518 0.904821852 0.892742389 0.923979645 0.985170696 0.97206277 0.909422085 371947994 fthfs Singulisphaera acidiphila DSM 18658 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Singulisphaera;species:Singulisphaera acidiphila; 1.248551123 1.259703028 1.216776848 1.235148054 1.208582509 1.257833246 1.192249302 1.222043787 1.203864715 1.190294165 1.210985589 1.221683936 1.195246368 1.181093147 1.183730538 1.22685123 1.233296406 1.197345077 345635518 catechol Streptomyces zinciresistens K42 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces zinciresistens; 1.007632736 0.985657692 0.930964454 1.004501115 0.952326308 0.95975029 0.953558997 0.916046301 0.993178207 0.991503955 0.952998058 1.082930394 0.987149122 0.997598202 1.090300536 1.100428597 0.996230204 0.970557206 228015267 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.079698095 1.12054161 1.061120802 1.10573672 1.096007771 1.123477205 1.071185821 1.095900547 1.090179105 1.080599339 1.071797408 1.061111557 1.066246984 1.07960879 1.065536042 1.067026665 1.098789757 1.123443615 374661511 mer Saccharomonospora cyanea NA-134 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora cyanea; 1.110452494 1.152612573 1.114397056 1.080266344 1.107828881 1.119597991 1.127053747 1.083521221 1.128344737 1.054411451 1.075460908 1.089540992 1.056560196 1.0778207 1.098912612 1.06734185 1.089374086 1.097684476 229325299 Sir Bacillus coagulans 36D1 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus coagulans; 0.969212737 0.97413138 0.950475666 1.037747149 0.95450894 0.929586105 0.966598277 0.957398033 0.978642347 0.979142432 0.945713469 0.997816163 0.952718184 0.910968694 0.884014045 0.932958584 0.95658686 0.93129681 77379085 mer uncultured bacterium Metal Homeostasis Mercury Detoxification superkingdom:Bacteria; 0.915828998 1.020194465 0.945250543 0.941312094 0.965046359 1.047915687 0.908052967 0.883725904 0.910171826 1.028223716 0.938442028 1.001476471 0.980502344 1.052808988 0.936716953 0.975364686 0.983681202 1.04809778 133907578 amyA Phanerochaete chrysosporium Carbon Cycling Carbon degradation Starch superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Corticiales;family:Corticiaceae;genus:Phanerochaete; 0.945297664 1.014236749 0.909141928 0.934212899 0.973738393 1.059051043 0.950753102 0.947365453 0.956905922 1.019749647 1.0024235 0.980035632 0.996870031 0.994619627 0.955305193 0.993212514 0.979806604 1.019689404 332377186 fthfs uncultured bacterium Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria; 0.880881114 0.892419289 0.828096291 0.902143893 0.869559789 0.893921202 0.818017496 0.808059537 0.84813154 0.885435649 0.824475795 0.899833797 0.840420802 0.85789395 0.833562607 0.846076712 0.871177442 0.858475008 226941000 napa Laribacter hongkongensis HLHK9 Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Laribacter;species:Laribacter hongkongensis; 1.039456952 1.06311676 1.030090012 0.997058057 1.010523582 1.039697393 0.980873091 0.999844769 0.992879566 1.026131052 1.043976851 1.06510246 1.013713365 1.018290961 1.008401135 0.981053502 0.988440267 1.056004099 149389254 mult_ring_12DiOx Pseudomonas nitroreducens Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 1.049058462 1.01228822 0.996712199 1.005400997 0.984508592 1.023464189 0.964988023 0.992693717 0.997253198 1.019002954 1.047935104 1.059060917 0.966420962 1.030835454 1.031477855 0.969391991 1.020874896 1.021299628 161166644 amyA Sorangium cellulosum 'So ce 56' Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 0.861554425 0.858743826 0.830885436 0.843936822 0.872031575 0.869184111 0.81348392 0.844963994 0.830064392 0.820065129 0.803998701 0.814892077 0.802846429 0.89617332 0.868358022 63029733 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.775874843 0.800727372 0.784030779 0.812955668 0.814895576 0.813429078 404271674 ben_bcla Bradyrhizobium sp. CCGE-LA001 virulence NA NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.882439126 0.886559757 0.952325339 0.921200116 0.910019897 0.946943239 0.91123496 0.889546613 0.901393133 0.894341505 0.894089837 0.878237558 0.878620442 0.859405474 0.880212147 0.873406531 0.952151185 0.891662784 387875096 limeh Mycobacterium sp. MOTT36Y Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 1.029567178 1.020537004 1.02795491 1.044137085 0.996351805 1.017609176 0.985878387 1.014983596 1.019631234 0.985030914 0.962077673 1.017901192 0.972780105 1.011343454 0.936666274 0.989066991 1.045975754 0.968212408 220933468 FBPase Thioalkalivibrio sulfidophilus HL-EbGr7 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio;species:Thioalkalivibrio sulfidophilus; 1.069143457 1.069831227 1.009096057 1.065220292 1.084081793 1.080386983 1.046268322 1.031236169 0.991799321 1.054315156 1.026982481 1.0211952 1.018798163 1.075376432 1.003323106 1.059684602 1.165433974 1.084086394 384040841 aoxb uncultured bacterium Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 0.907133847 0.856242153 0.858696185 0.891815471 0.890607911 0.86857343 0.84684246 0.851385397 0.882380505 0.825311311 0.840009523 0.839318169 0.834512524 0.834669549 0.818736451 0.81762999 0.868402105 0.867878521 315644933 cda Paenibacillus vortex V453 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus vortex; 0.879992242 0.891880489 0.880357354 0.85720205 0.856462341 0.835487281 0.866168755 0.855873556 0.86852068 0.929759335 0.864097178 0.895350571 0.908256539 0.905880621 0.844892609 0.881018455 0.849395035 0.912720531 148272855 xylanase Clavibacter michiganensis subsp. michiganensis NCPPB 382 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Clavibacter;species:Clavibacter michiganensis; 1.180592212 1.157908128 1.120094024 1.163198476 1.153738185 1.162745832 1.114219335 1.130373554 1.126375224 1.130274687 1.136521534 1.14135018 1.089096087 1.135685295 1.096021085 1.095640694 1.169180478 1.154150313 114541423 phn Roseovarius sp. HTCC2601 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pelagibaca;species:Pelagibaca bermudensis; 0.778625491 0.906118946 0.807043586 0.828485517 0.805538304 0.850330685 0.800554662 0.85570724 0.821299698 0.820757729 0.790401162 0.841813579 0.857777768 340521563 ara Trichoderma reesei QM6a Carbon Cycling Carbon degradation Hemicellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Hypocreaceae;genus:Trichoderma;species:Trichoderma reesei; 1.035148187 1.054591265 1.038186909 0.990247499 1.027027283 1.058298304 1.011571214 0.999656648 1.028699205 1.0713193 1.042068629 0.984666745 0.947601067 0.975928341 0.908564503 0.977222307 1.011574964 1.065304248 392720718 pchcf Novosphingobium sp. Rr 2-17 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 1.139229342 1.104263652 1.115713739 1.145467365 1.097986471 1.110071375 1.094094213 1.145500369 1.15255542 1.090845313 1.10920648 1.127375605 1.091224988 1.08359171 1.08069431 1.116614769 1.110671528 1.135833985 344036340 amyA Streptomyces violaceusniger Tu 4113 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces violaceusniger; 1.275288254 1.246537612 1.272330326 1.30811661 1.259804517 1.274620391 1.281167172 1.290718326 1.256530428 1.20166158 1.246666625 1.258821608 1.220117818 1.182033079 1.212075164 1.213729635 1.274421171 1.191957858 170934034 dsra Thermoproteus neutrophilus V24Sta Sulfur sulfite reduction NA superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Thermoproteus;species:Thermoproteus neutrophilus; 1.064448834 1.264367893 1.062293279 1.046121125 1.058767978 1.049427553 1.045454083 1.083070176 1.05766197 1.054101695 1.069670134 1.084501956 1.030893132 1.025093039 1.029307918 1.029746771 1.005651466 1.051490044 385670045 poba Streptomyces tsukubaensis NRRL18488 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces tsukubaensis; 1.086190722 1.097960609 1.041696043 1.063012319 1.06428154 1.060110703 1.009886733 1.000131818 1.060609132 1.037269085 1.021439433 1.031189977 0.992528605 1.015475935 0.989016625 1.003539967 1.091627078 1.08221047 342832578 amyA Streptococcus cristatus ATCC 51100 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus cristatus; 0.802117687 0.804997256 0.816081809 0.766019352 0.812399946 0.793370634 292818365 one_ring_12diox Achromobacter piechaudii ATCC 43553 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter;species:Achromobacter piechaudii; 1.277926455 1.192982389 1.216571956 1.246482545 1.224161703 1.236037896 1.194478978 1.227895865 1.215084577 1.15419802 1.177526625 1.168423211 1.193626948 1.137415913 1.16042427 1.181438656 1.25994922 1.210120583 115421585 chnd Bordetella avium 197N Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella avium; 0.819487797 0.807146233 0.805618779 0.855949821 0.818356028 0.831938974 0.843878382 0.831474342 0.809645736 0.839932681 0.796885616 0.845864584 0.82139764 0.765609347 0.830598501 115388375 amyA Aspergillus terreus NIH2624 Carbon Cycling Carbon degradation Starch superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 0.919210182 0.910752254 0.892953202 0.90966915 0.93460749 0.918157105 0.970983938 0.896544189 0.881658263 0.935086391 0.921243275 0.916271272 0.913024893 0.905029818 0.866650561 0.852723397 0.902350228 0.961963744 29832919 pme Streptomyces avermitilis MA-4680 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 1.054761726 1.134050567 1.022459516 1.04364696 1.064380548 1.082408957 1.043944289 1.029106164 1.031504286 1.081607275 1.053613849 1.06885788 1.031043048 1.095168073 1.057650189 1.040968241 1.032649429 1.070185931 46121433 protease_serine_fungi Gibberella zeae PH-1 Carbon Cycling Carbon degradation protein superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Gibberella;species:Gibberella zeae; 0.870487723 0.874008155 0.89698404 0.906852814 0.882057422 0.900289324 0.820994343 0.865836171 0.809257501 0.894080809 0.863185642 0.88721861 260433809 dmdA Silicibacter lacuscaerulensis ITI-1157 Sulfur DMSP degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria lacuscaerulensis; 1.292782256 1.140490306 1.243652563 1.232086881 1.284357343 1.502850345 1.31946314 1.190269779 1.234774284 1.374322266 1.358271122 1.307658944 1.308721111 1.315207095 1.2632603 1.31865932 1.275418301 1.210749052 238869986 nfsa_2 Edwardsiella ictaluri 93-146 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Edwardsiella;species:Edwardsiella ictaluri; 0.879281636 0.857771098 0.904279988 0.939003875 0.886018304 0.870781969 0.911457575 0.913631863 0.881174396 0.861420899 0.90366526 0.887952881 0.883612341 0.878913238 0.870869439 0.885511667 0.917883714 0.870505535 148518037 vdh Methylobacterium sp. 4-46 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 1.359249779 1.315765713 1.333804641 1.318877138 1.336768225 1.298713267 1.30759859 1.312323747 1.326638162 1.341856183 1.327975678 1.351012238 1.281347798 1.274674934 1.312078229 1.297862531 1.298034411 1.320628461 239880805 gdh Perkinsus marinus ATCC 50983 Nitrogen Ammonification NA superkingdom:Eukaryota;order:Perkinsida;family:Perkinsidae;genus:Perkinsus;species:Perkinsus marinus; 0.966005884 0.9257935 0.996103381 0.985607631 0.961168093 0.953020922 0.974648652 0.965809463 0.973076196 0.944930636 0.977095609 0.937080472 0.902069042 0.961125155 0.928920523 0.925948775 0.967036939 0.911985677 337280093 dehh Ramlibacter tataouinensis TTB310 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Ramlibacter;species:Ramlibacter tataouinensis; 0.901039692 0.940414378 0.887987907 0.926108321 0.861574771 0.897969901 0.830678509 0.910233242 0.897194005 0.938383422 0.874620931 0.917610344 0.833650653 0.92667435 0.853825838 0.886383598 0.929747548 0.921260981 256421611 endochitinase Chitinophaga pinensis DSM 2588 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;genus:Chitinophaga;species:Chitinophaga pinensis; 0.786463388 0.783165592 0.872477402 0.792979583 0.826750346 0.872781609 0.774219624 0.832108798 149360459 urec Marinobacter algicola DG893 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter algicola; 1.078424704 1.058784244 1.033850458 1.07630458 0.990321784 1.03185644 0.996346637 1.05604238 1.07394144 1.029589008 1.020340792 1.026903799 0.978083395 1.011018197 1.001674667 1.033465586 1.052946886 1.026289962 58219335 beta_agarase Pseudomonas sp. ND137 Carbon Cycling Carbon degradation Agar superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.949462831 0.977277841 0.858826227 0.909031124 0.906948892 0.918119136 0.837864152 0.943488757 0.946394417 0.937153426 0.899073881 0.954920687 0.935408102 0.919886326 0.905205839 0.875079862 0.978221736 261366892 ppk Subdoligranulum variabile DSM 15176 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Subdoligranulum;species:Subdoligranulum variabile; 0.882537249 0.834966435 0.815502726 0.932504882 0.853742756 0.851788736 0.856874299 0.843213724 0.866045516 0.865781743 0.854278989 0.916982101 0.840401934 0.835286179 0.824038776 0.886163691 0.862524899 296180693 amyA Segniliparus rotundus DSM 44985 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Segniliparaceae;genus:Segniliparus;species:Segniliparus rotundus; 0.912672827 0.99054697 0.918862537 0.965951772 0.994577132 1.016771502 0.967492926 0.948244237 0.916664318 0.980032889 0.960902141 0.96687535 0.984962451 0.961744864 0.948740098 0.991922784 0.979224942 0.978158452 291582012 rubisco Nitrosococcus halophilus Nc4 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Nitrosococcus;species:Nitrosococcus halophilus; 1.004379213 0.96835395 1.0226201 1.022909518 1.020165206 1.033967534 1.058634306 1.012102493 1.033853851 1.065247675 1.021746894 1.068599369 1.024773423 1.091138685 1.029280072 1.104868052 1.024032941 1.051542342 334137476 amyA Paenibacillus sp. HGF7 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 0.955818945 0.951591984 0.896542939 0.932148309 0.936817019 0.939423696 0.952798361 0.938497762 0.949911555 1.011115019 0.946056258 0.95125437 0.939720662 0.980367649 0.885643922 0.930815851 0.924068911 0.991004018 333114367 arylest Pseudomonas fulva 12-X Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fulva; 1.025309105 1.041063543 0.995126386 1.026854705 1.009204992 1.042965179 0.965114025 0.996687684 1.020787759 0.99084937 0.985416516 0.990482243 0.99541656 1.035215786 1.000535537 0.970637412 1.059894666 1.055559505 349787319 xyla Thermobacillus composti KWC4 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Thermobacillus;species:Thermobacillus composti; 0.968936955 1.009861081 0.950357801 1.004775732 0.941648786 1.004517157 0.87944944 0.913854402 0.976236723 0.996153897 0.912920119 0.92841649 0.885171959 0.97549161 0.916809852 0.927877254 0.994132083 1.02647921 157315865 dmsa Shewanella sediminis HAW-EB3 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella sediminis; 0.842565137 0.788069558 0.909402538 0.825335838 355538028 pcpe Agrobacterium tumefaciens CCNWGS0286 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 1.173935115 1.127434985 1.119826994 1.117318068 1.108741045 1.138716347 1.107660958 1.106682579 1.124096941 1.151538958 1.148952038 1.127987265 1.09404821 1.089189435 1.054163821 1.103107064 1.138106775 1.1454966 327395250 cmci Pantoea ananatis AJ13355 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea;species:Pantoea ananatis; 0.995899742 0.951213386 1.017484161 1.020521505 1.027582322 0.990042422 1.005293533 0.986387471 1.007396688 0.99518991 0.962722459 0.998954519 0.936505796 0.926415753 0.952846465 0.954554459 1.006115663 0.985271796 126232912 chnb Mycobacterium sp. JLS Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 1.33502072 1.320037331 1.291823376 1.298576844 1.271746131 1.329222454 1.286587034 1.299370639 1.301762374 1.303822537 1.280547521 1.285504908 1.241963086 1.253349099 1.223321812 1.266860374 1.311801782 1.318332984 6014584 dsrB Solar Lake Mat Clone22 Sulfur sulfite reduction NA superkingdom:Bacteria; 0.926985717 0.908610657 0.912297318 0.937018533 0.903886073 0.881280608 0.891548384 0.93133924 0.922024046 0.880378017 0.90825798 0.890686453 0.911246243 0.866708462 0.867808971 0.879688629 0.92110334 0.905019446 67524479 tannase_Cdeg Aspergillus nidulans FGSC A4 Carbon Cycling Carbon degradation Tannins superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 1.579123165 1.528935928 1.539139536 1.533041068 1.497918845 1.524242711 1.47218595 1.510250995 1.527294579 1.505592624 1.530887952 1.523819362 1.477757138 1.458761527 1.47339666 1.473643481 1.528241841 1.502287134 330958799 tktA Pseudomonas syringae pv. maculicola str. ES4326 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 1.099436042 1.109211897 1.073223528 1.118283799 1.065453415 1.120360077 1.055880313 1.078768685 1.102207167 1.098234081 1.059700609 1.086462754 1.043481231 1.259755523 1.428257844 1.0758335 1.079991473 1.111211668 3821797 exochitinase Bacillus circulans Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 0.973007828 0.959568181 0.98418984 0.96071765 1.038659096 1.028301243 1.011406972 1.032884555 0.988619818 1.005995455 1.005607233 0.972153626 0.977181523 0.92750649 0.959587594 0.962586071 0.975610387 0.990322332 239823689 dehh109 Ochrobactrum intermedium LMG 3301 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum intermedium; 1.095468969 1.053655498 1.092648436 1.011495584 1.048176853 0.991987653 1.029117159 1.017842914 1.080508714 1.064840474 1.061106835 1.027405043 1.031845017 1.048247533 1.037395682 1.000682039 1.088584259 1.083595174 62003537 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.404653218 1.39873349 1.374402105 1.370082866 1.373014376 1.405200138 1.362845972 1.375198813 1.363276613 1.384716548 1.375012924 1.376679659 1.356217629 1.348655383 1.338392828 1.352064382 1.377563562 1.388193764 226834586 acetylglucosaminidase Actinomyces urogenitalis DSM 15434 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces urogenitalis; 0.772358125 0.788766047 32527251 nosz Ralstonia eutropha H16 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 1.027765095 0.998227593 0.944633502 1.007173544 0.920582855 0.969218948 0.940047265 0.900468479 1.012743878 0.961657353 0.953677264 0.937514271 0.924191366 0.916054268 0.912545122 0.964390663 1.020753731 0.959747081 323274163 amyA Microbacterium testaceum StLB037 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Microbacterium;species:Microbacterium testaceum; 1.089800859 1.090054968 1.050374491 1.075861922 1.030342168 1.070971961 1.037848817 1.026292953 1.050978459 1.072093688 1.011035251 1.040733945 1.017957159 1.042966125 0.975842721 1.047839287 1.101005462 1.075632952 6646927 chitinase Sagittula stellata E-37 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 0.817006473 0.874451093 0.849395916 0.88967005 0.864668687 0.832533261 0.814016046 0.813237967 0.846300443 0.853766497 0.842210608 0.826350087 0.834788515 0.837191376 0.821996416 0.839247265 0.866573678 168193152 Bacteriorhodopsin Methylobacterium sp. 4-46 Secondary metabolism Pigments Rhodopsin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 1.192630021 1.159464042 1.162461692 1.19255159 1.158040094 1.181390761 1.13346582 1.175321749 1.161827325 1.174203901 1.163526839 1.171032622 1.138645803 1.151949046 1.085338022 1.142819906 1.177415148 1.187135333 374413681 dsra uncultured prokaryote Sulfur sulfite reduction NA 1.130378473 1.185296072 1.12590475 1.130677684 1.070269565 1.165083843 1.072675111 1.100494321 1.099063374 1.085637743 1.142030028 1.095874309 1.050650401 1.097397976 1.035057929 1.088859003 1.133683895 1.121068407 139478467 mer uncultured soil bacterium Metal Homeostasis Mercury Detoxification superkingdom:Bacteria; 0.802536752 0.82329173 780816 xylanase Hypocrea jecorina Carbon Cycling Carbon degradation Hemicellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Hypocreaceae;genus:Hypocrea; 0.859820433 0.860208638 0.917360927 0.890677064 0.849335397 0.941925173 0.849555436 0.869870183 0.931461213 0.880945625 0.873764516 0.926715953 0.867178427 0.881692672 0.841735252 0.890520619 0.866539702 383869391 amyA Treponema sp. JC4 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema; 0.791142095 0.847982054 0.866655275 0.874292776 0.847933118 0.853051671 0.852020366 0.818641402 0.845113613 0.838453111 0.866150353 0.879023434 0.845215218 0.867981309 91775804 exaa(moxf) Methylobacillus flagellatus KT Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Methylophilales;family:Methylophilaceae;genus:Methylobacillus;species:Methylobacillus flagellatus; 0.919503323 0.944825666 0.933268016 0.948630348 0.902435112 0.944149814 0.907877741 0.895144718 0.913617154 0.916643313 0.935218691 0.900138166 0.910295942 0.892164471 0.892837369 0.894560451 0.956180339 0.945588667 85710414 linc Erythrobacter sp. NAP1 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter; 1.165634748 1.15307303 1.156794156 1.14125809 1.096787256 1.145607463 1.093182068 1.128458085 1.130762094 1.122096933 1.112837976 1.132546759 1.081205565 1.098955746 1.070885254 1.105254312 1.157430893 1.134703557 14330995 alkb Rhodococcus fascians Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 0.884586495 0.869105758 0.824953089 0.922215313 0.86017834 0.892877513 0.875656676 0.895395159 0.863261985 0.846844306 0.83321933 0.883561555 0.824278342 0.827851676 0.855165395 0.824809825 0.871347135 0.861791553 323383815 ppx Burkholderia sp. CCGE1001 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 0.884697332 0.844200875 0.879365806 0.883155893 0.836572684 0.885783801 0.915424061 0.884047681 0.862436238 0.854703249 0.853187522 0.867903549 0.901330933 55845943 nitrate_reductase Phaeodactylum tricornutum Nitrogen N Assimilation NA superkingdom:Eukaryota;phylum:Bacillariophyta;class:Bacillariophyceae;order:Naviculales;family:Phaeodactylaceae;genus:Phaeodactylum; 0.804128334 0.815088833 0.847033562 0.851695728 0.845970077 0.811654921 0.830219852 0.861466172 0.81882443 0.829542999 0.862685972 0.8128609 0.826923655 0.832045578 0.801923341 0.850758341 351717406 mer Methylomicrobium alcaliphilum Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylomicrobium; 1.148825057 1.130711548 1.108267822 1.134787707 1.095202375 1.135336538 1.071760052 1.087380658 1.132008811 1.070009527 1.068403494 1.089363414 1.073804992 1.039303141 1.060717618 1.088596456 1.165914647 1.096138517 88179961 pme_Cdeg Chaetomium globosum CBS 148.51 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 0.86522855 0.88571628 0.826271379 1.007172792 0.892405682 0.928889757 0.899504269 0.918929831 0.955087084 0.912082218 0.833958385 0.939793475 0.952462074 0.853646952 0.85232318 0.924094335 0.956111512 0.916665976 211588552 pme_Cdeg Penicillium chrysogenum Wisconsin 54-1255 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 0.761937187 0.792048636 0.784478411 0.804923909 3820518 phdci Burkholderia sp. RP007 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 1.392776072 1.372365839 1.361257402 1.366169344 1.352354673 1.387833858 1.333235341 1.367789822 1.349636852 1.313441666 1.346077985 1.360174726 1.335297957 1.314112216 1.338250634 1.343735791 1.368813428 1.33119635 26278828 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.929872388 0.949987169 0.900421982 0.922180363 0.927232701 0.93891643 0.92292599 0.911486728 0.898432084 0.936378475 0.921744632 0.939163541 0.888697693 0.909679188 0.879791172 0.889859124 0.959422699 0.930868321 535792 amyA Pseudomonas sp. Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria; 0.780560543 0.791304964 0.787870525 0.794061402 359738155 terc Saccharomonospora azurea SZMC 14600 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora azurea; 0.81112932 0.841373677 0.788985569 0.831637668 0.841099257 0.808064506 0.796186622 0.816236268 0.813780642 0.796065363 0.854277156 0.85869417 302423900 axe Verticillium albo-atrum VaMs.102 Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticillium;species:Verticillium alfalfae; 1.207163159 1.191132308 1.18550106 1.19317734 1.152983372 1.190021983 1.150421771 1.149354541 1.171309156 1.157851438 1.161284524 1.175431001 1.138536426 1.143714155 1.102588268 1.152689194 1.221885195 1.160786034 299536645 CsoS1_CcmK Lysinibacillus fusiformis ZC1 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Lysinibacillus;species:Lysinibacillus fusiformis; 0.966094736 0.976622323 0.958889029 0.993583499 0.963915152 0.997062799 0.978225612 0.989053384 1.002608986 1.006962048 0.912859256 0.969678869 0.959834043 0.954878693 0.930193618 0.933778321 1.116870474 0.983156207 78185919 arra Chlorobium luteolum DSM 273 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Pelodictyon;species:Pelodictyon luteolum; 1.353695139 1.358302282 1.292611474 1.36269933 1.336106775 1.347945412 1.227720316 1.231367025 1.350625673 1.319115769 1.308742305 1.365141298 1.299622972 1.297068655 1.266780786 1.285836965 1.343952483 1.317908394 114341742 amyA Maricaulis maris MCS10 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Maricaulis;species:Maricaulis maris; 0.786454619 0.795688014 0.807185217 0.862864468 356665107 cutinase Rhodococcus opacus PD630 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus opacus; 0.851409335 1.0345598 0.914658478 0.909785737 0.873761827 0.883351203 0.944601068 0.87037438 0.892111644 0.933740122 0.86639716 0.864382894 0.962565637 0.811684419 0.855828821 0.805848707 0.873344503 1.025260151 353547555 CsoS1_CcmK Desulfosporosinus meridiei DSM 13257 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfosporosinus;species:Desulfosporosinus meridiei; 0.903504519 0.908509406 0.848384881 0.882145693 0.906929839 0.883463581 0.873851501 0.852002043 0.853601337 0.833865046 0.882281033 0.826334281 0.813085553 0.81431566 0.859331239 0.902894221 307721037 sucD Sulfurimonas autotrophica DSM 16294 Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Sulfurimonas;species:Sulfurimonas autotrophica; 0.810053045 0.908941391 0.887162905 0.808595335 0.890103388 0.806194106 0.87589584 0.802835098 0.808002274 0.822954349 118471712 bphc Mycobacterium smegmatis str. MC2 155 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 1.202564805 1.177716519 1.16748394 1.171701546 1.16291593 1.200410046 1.119097458 1.135075397 1.176215741 1.149451056 1.121856345 1.154307193 1.152686129 1.137722159 1.125605044 1.12506347 1.184169878 1.159379958 302535228 xylg Streptomyces sp. C Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 0.943156917 0.904114196 0.859436151 0.943345243 0.867873764 0.869463395 0.875323554 0.779825919 0.827933703 0.812177176 0.86070662 0.890097347 199653468 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.012471632 0.959676646 0.928881395 0.996340203 0.946345951 0.978876297 0.972817302 0.979883487 0.984361039 0.971789902 0.927355212 0.975802796 0.933030552 0.93613774 0.933301251 0.941680174 0.973020678 0.991263887 77543338 one_ring_23diox Sphingomonas sp. FCIB Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 1.032385148 1.060234082 1.092520019 1.040928885 1.061681468 1.095370573 1.038203832 1.005262522 1.059580491 1.080986026 1.090800062 1.072445611 1.047672026 1.03922578 1.010122131 1.01533298 1.024482799 1.070941532 296444631 nifh Methylosinus trichosporium OB3b Nitrogen Nitrogen fixation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylocystaceae;genus:Methylosinus;species:Methylosinus trichosporium; 0.784380885 0.872021889 0.810864675 0.836795689 0.817656506 0.832603155 0.894544313 0.830716999 0.979372843 0.803225096 0.911926199 294340408 ppk Thiomonas sp. 3As Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Thiomonas; 0.840790167 0.90190338 0.848352879 0.879823643 0.848235721 0.894915292 0.84755167 0.839806027 0.849399137 0.853480197 0.850474846 0.874476792 0.883860946 0.916935487 113528451 chnb Ralstonia eutropha H16 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 0.912712935 0.992606917 0.839382352 0.880027244 0.817705768 0.891137278 0.872775896 0.863130514 0.874717413 0.878686963 0.816691261 0.869416727 0.816424442 0.826689084 0.818985717 0.881816412 0.896388804 358370983 badh Aspergillus kawachii IFO 4308 Organic Remediation Aromatics Other aromatics superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus kawachii; 0.883529966 0.853655461 0.83152123 0.990074461 0.830334263 0.861116004 0.834083723 0.875810353 1.050893465 0.810606911 0.809389918 0.867485002 0.87523222 0.834800912 0.847938082 0.894689063 0.841317275 322378686 terc Helicobacter suis HS1 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Helicobacter;species:Helicobacter suis; 0.872081818 0.894275937 0.893328512 0.848094678 0.885728433 0.812410829 0.863624586 0.892784807 0.886389292 307727787 nitrilase Burkholderia sp. CCGE1003 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 1.127408423 1.229260506 1.094970953 1.025333552 1.057131294 1.083996253 1.037165998 1.048129422 1.073516962 1.102468941 1.091221724 1.062005419 1.056532132 1.12669589 1.017209064 1.04998661 1.167215789 1.076071631 114799243 ppk Hyphomonas neptunium ATCC 15444 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Hyphomonas;species:Hyphomonas neptunium; 0.97397579 1.000284334 0.949457892 0.967434923 0.964612718 1.06311931 1.011999686 0.932991092 0.955798759 1.028156933 0.996927011 0.913630041 0.961156295 1.013590978 0.951430809 0.951057225 1.023407931 1.011123079 149125064 pcpe Methylobacterium sp. 4-46 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 0.922747067 0.918623311 0.927134595 0.898932301 0.921533776 0.948196672 0.899301971 0.895077113 0.898481544 0.953333844 0.953770857 0.931628832 0.881946269 0.917905354 0.870926031 0.880955203 0.964073627 0.972295892 38373203 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.982278648 0.984481061 0.999856399 1.012701287 0.968962468 0.980139071 0.964676458 0.93713632 0.990204551 0.996197086 1.002925817 1.016038697 0.984947504 0.99337051 0.930572746 0.948215685 0.986424671 0.958028932 160427167 rgl Clostridium phytofermentans ISDg Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium phytofermentans; 0.759637617 0.821095201 0.780247595 0.827565916 0.809158908 0.802866266 0.987109957 0.826564258 0.754926454 0.828120063 239988087 acetylglucosaminidase Streptomyces roseosporus NRRL 11379 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces filamentosus; 1.340001747 1.31095436 1.317259162 1.319777269 1.305323098 1.354230653 1.309404602 1.296431945 1.306937759 1.306824327 1.311757911 1.331185575 1.249964626 1.281736313 1.241831359 1.287931943 1.351613885 1.287772619 4835332 endochitinase Streptomyces coelicolor A3(2) Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 0.844842189 0.861988648 0.881420061 0.814286503 0.814567049 0.836166039 0.842076008 0.825196479 0.80371729 0.876335706 0.877768365 290960744 ara Streptomyces scabiei 87.22 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces scabiei; 1.065796163 1.038134045 1.050073559 1.050726096 1.00988471 1.046299742 0.989248006 1.024232441 1.058737592 1.007036858 1.020286602 1.059337451 1.002474881 1.000441076 0.994584716 1.021128176 1.057674646 1.0357162 359778069 terc Arthrobacter globiformis NBRC 12137 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter globiformis; 1.103726957 1.084646116 1.107171347 1.107282269 1.128515737 1.164709312 1.124482398 1.135899665 1.117135382 1.127953003 1.112842636 1.120002307 1.102809616 1.072632556 1.071016783 1.099513514 1.119610274 1.143533899 319648916 chitinase Bacillus sp. BT1B_CT2 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 1.038216662 0.945406402 0.97007852 1.015922843 0.989451659 1.026235829 0.974865943 0.990037312 0.997018122 0.952698465 0.974047708 1.005889601 0.957064158 0.942829216 1.009810366 0.978827343 1.06676283 1.046806668 148550856 dxna Sphingomonas wittichii RW1 Organic Remediation Aromatics Heterocyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 1.038831349 1.05224189 1.030252213 1.04751816 1.009805897 1.01289608 1.069471186 0.99122099 1.051298734 1.034732604 0.973745476 1.030222961 0.991037545 1.011286999 1.000169164 1.008776984 1.061732817 1.034367831 115519141 nifh Rhodopseudomonas palustris BisA53 Nitrogen Nitrogen fixation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 0.79500378 0.788874206 0.795784742 0.7598779 0.81712315 0.808889535 0.829643013 220903367 nrfa Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio desulfuricans; 0.97348321 0.94332289 0.963157471 1.016525367 0.974805413 0.96707837 0.939701201 0.950586533 0.978527794 0.960358601 0.936621868 0.983991523 0.944692875 0.953510985 0.909083851 0.946859051 0.980328484 0.941022891 375108215 terc Burkholderiales bacterium JOSHI_001 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales; 1.063150409 1.062612474 1.053971799 1.083945913 1.088400819 1.096323085 1.073401084 1.082545172 1.065790189 1.09704785 1.106514455 1.0972318 1.03678322 1.008942858 0.986553232 1.027314552 1.068861227 1.045884996 120593759 arylest Polaromonas naphthalenivorans CJ2 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 0.79796941 0.839447175 0.840963041 0.819703405 0.798571466 0.861648815 170690075 tktA Burkholderia graminis C4D1M Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia graminis; 1.002403317 0.976540912 0.96184364 0.928319173 0.953010556 0.940125421 0.904801871 0.884022297 0.865864967 0.96206526 1.008583265 0.932486063 0.892596286 0.869670237 0.906810501 0.919998441 0.91449824 0.95358525 385763585 dsrB uncultured bacterium ws020C1 Sulfur sulfite reduction NA superkingdom:Bacteria; 1.395587826 1.367166976 1.350985497 1.372741148 1.336292908 1.381625616 1.333717051 1.345312438 1.337017528 1.313953364 1.335237178 1.337557852 1.316939187 1.305322135 1.307254481 1.322035213 1.376807571 1.317838958 308434779 amyA Dermacoccus sp. Ellin185 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dermacoccaceae;genus:Dermacoccus; 1.241205418 1.203432443 1.212057011 1.239620776 1.199468994 1.213239293 1.187167431 1.205358226 1.220424906 1.192755619 1.209571447 1.216992867 1.190228121 1.141643724 1.174273404 1.18317016 1.24789297 1.185009356 226309429 xylg Rhodococcus erythropolis PR4 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 0.945073689 0.9746877 0.902268124 0.967704003 0.906939902 0.922430412 0.857185251 0.890473245 0.91604137 0.932417579 0.917195105 0.887304575 0.899357143 0.951522277 0.844271973 0.89910136 0.932328374 0.959953443 302423694 bph Verticillium albo-atrum VaMs.102 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticillium;species:Verticillium alfalfae; 1.029552602 1.017912166 1.025240361 1.046549965 0.995184854 1.081665493 1.02256067 1.027809619 1.004810346 1.028354006 0.997629145 1.034332529 0.975187199 1.040263014 1.002146778 0.98574606 1.035294147 1.009828675 375753018 amyA Gordonia polyisoprenivorans VH2 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia polyisoprenivorans; 1.444383123 1.418129033 1.424899966 1.406962264 1.388682942 1.433789913 1.341292796 1.388770191 1.382665266 1.374971546 1.394380487 1.379464564 1.388939828 1.394769212 1.337598636 1.380127563 1.421804593 1.394372712 260455819 amyA Streptomyces flavogriseus ATCC 33331 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces flavogriseus; 1.122176043 1.094485261 1.054205067 1.064051856 1.043444071 1.056300093 1.041469782 1.047462773 1.063201575 1.069387999 1.098302572 1.096779171 1.08984302 1.042391608 0.994177771 1.045194111 1.080445282 1.071860962 389870432 terc Advenella kashmirensis WT001 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Advenella;species:Advenella kashmirensis; 1.00708363 0.987465403 0.92577669 0.990665306 0.946232209 0.891742364 0.916953703 0.909561509 0.978475589 0.953515432 1.001833556 0.991943541 0.855650411 0.900381344 0.818756906 0.875638529 0.963307668 0.968116876 257053509 xyla Halorhabdus utahensis DSM 12940 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halorhabdus;species:Halorhabdus utahensis; 1.12193785 1.140869624 1.110391535 1.118846092 1.064649711 1.151943535 1.045761466 1.079619336 1.068384789 1.101948814 1.078708022 1.076171239 1.071911199 1.12346751 1.043886441 1.085285561 1.134455684 1.135621687 169612405 tfda Phaeosphaeria nodorum SN15 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Phaeosphaeriaceae;genus:Parastagonospora;species:Parastagonospora nodorum; 0.860889392 0.863232657 0.881351069 0.851118013 0.81298655 0.87593068 0.902934505 0.876229131 0.82248098 0.865221384 0.841293777 0.865573474 296027 exoglucanase Phanerochaete chrysosporium Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Corticiales;family:Corticiaceae;genus:Phanerochaete; 0.875943252 0.874624514 0.878070193 0.905332273 0.859276689 0.880979301 0.894828846 0.867031126 0.882463192 0.816278393 0.913937255 0.932330645 86569224 amyA Frankia sp. CcI3 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 1.411279659 1.356923549 1.380899261 1.406373904 1.357141246 1.391303942 1.35254947 1.394395207 1.374482241 1.348392109 1.378949693 1.388878307 1.347728982 1.346351787 1.362987873 1.374519087 1.388488758 1.336165885 70985478 tannase_Cdeg Aspergillus fumigatus Af293 Carbon Cycling Carbon degradation Tannins superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus fumigatus; 0.960436895 1.028079065 0.97528584 1.00931784 0.980945198 0.986386673 0.908455169 0.952874459 1.000812566 0.986946669 0.977467994 0.990187481 0.974011212 0.957788993 0.890294296 0.963562465 0.98190798 0.977835693 90903277 aoxb uncultured bacterium Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 0.891176802 0.878534801 0.819323692 0.821054867 0.828002546 0.824974127 0.833272507 0.810379752 0.862582369 0.81391345 0.828593667 0.85489181 0.862110197 54023783 amyA Nocardia farcinica IFM 10152 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 0.961400544 1.031435785 0.984606802 0.944253487 1.013795081 0.948293664 0.947291119 0.933566661 0.985429351 0.970913678 0.974584136 0.960299962 0.978708242 0.973115985 0.961242542 0.96587353 0.987480815 164375125 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.999269974 0.990376972 0.964591442 1.020071035 1.030017641 1.046281016 1.035489449 1.034335913 0.987973141 1.017166973 0.989371177 0.978304893 1.036298329 0.955290502 0.948033668 0.996595027 1.067411411 1.008323044 116669483 terc Arthrobacter sp. FB24 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 0.913073553 0.910236886 0.896124344 0.993976382 0.863058249 0.872196074 0.874966739 0.870849995 0.843034282 0.875653621 0.883409411 0.863848527 0.811470852 0.854639553 0.843702306 0.903126165 0.924929621 256391712 cellobiase Catenulispora acidiphila DSM 44928 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 1.154065666 1.142425863 1.120987682 1.164216055 1.080383064 1.143974261 1.108517193 1.141864655 1.155989082 1.14333599 1.092509075 1.131764454 1.078211655 1.101692926 1.089267043 1.117470133 1.161047389 1.162984066 168997439 pmoa uncultured bacterium Carbon Cycling Methane Methane oxidation superkingdom:Bacteria; 1.215044919 1.175962833 1.181015289 1.191127666 1.169164394 1.195421224 1.16957675 1.181320529 1.165872771 1.154772808 1.186669023 1.169174365 1.171887609 1.11749015 1.119668981 1.155178073 1.206735501 1.150754799 302682011 exopolygalacturonase_fungi Schizophyllum commune H4-8 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 0.820441748 0.844294049 0.841981873 0.869592949 0.821246891 0.800088896 0.801744953 0.840665915 119954449 chnb Mycobacterium vanbaalenii PYR-1 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 1.24190592 1.219086014 1.217766455 1.216167761 1.18089111 1.219526103 1.171217539 1.203095128 1.205784053 1.200102401 1.199761628 1.203681659 1.169466623 1.163660898 1.121487292 1.152510629 1.237842347 1.211004076 153999551 ppx Methanoregula boonei 6A8 Phosphorus Polyphosphate degradation NA superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;family:Methanoregulaceae;genus:Methanoregula;species:Methanoregula boonei; 0.907483347 0.933850344 0.925868495 0.893718238 0.936705147 0.944424159 0.899338666 0.834856418 0.883463938 0.905066791 0.864827341 0.878473252 0.90208279 0.865862002 0.870556447 0.922178313 0.921512408 0.939523536 115517221 mdlc Rhodopseudomonas palustris BisA53 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 0.928133973 0.960886694 0.950405076 0.958167371 0.972816808 0.949033135 0.911423779 0.91159796 0.929582402 0.915811001 0.917664535 0.931828652 0.958782301 0.926947405 0.888826516 0.948282672 0.995556153 0.931209623 378825465 phenol_oxidase Sinorhizobium fredii HH103 Carbon Cycling Carbon degradation Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium fredii; 1.057802879 1.076882525 1.047622043 1.087300603 1.07073905 1.047171514 1.046525837 1.057294882 1.07668254 1.034197494 1.058548951 1.09030321 1.029150399 1.025306376 1.011667145 1.050343183 1.064985482 1.047372313 351591819 pcpe Pelagibacterium halotolerans B2 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Pelagibacterium;species:Pelagibacterium halotolerans; 0.801812623 0.85090823 0.830721614 0.855371496 0.818794809 0.844752553 0.805704338 0.798455777 0.845843077 0.83814774 0.78049076 359775988 amyA Arthrobacter globiformis NBRC 12137 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter globiformis; 0.911585862 0.890847125 0.912675597 0.934695585 0.93652093 0.93655688 0.918498095 0.926647497 0.909595462 0.909836201 0.912115508 0.949442184 0.852727632 0.8964612 0.818073577 0.862567405 0.942199114 0.951539034 87290254 mer Blastopirellula marina DSM 3645 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Blastopirellula;species:Blastopirellula marina; 0.934109904 0.946566139 0.982105669 0.820034367 0.826234101 0.882345861 0.893845438 0.878647552 0.83014546 0.875752446 0.915475505 0.841550062 0.876446879 0.832885919 0.901001692 0.937412288 0.941824732 53854603 dsra Desulfovibrio aerotolerans Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 1.065040046 0.992085597 0.879048438 0.972844719 0.982886043 1.085317801 0.957073875 0.981498469 0.912663416 0.957914057 0.817808315 0.974406642 0.941394469 1.080679202 0.897755771 0.950305093 1.034621844 0.983499956 149752561 ppk Dorea longicatena DSM 13814 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Dorea;species:Dorea longicatena; 1.06086093 1.058009659 0.99987933 1.049281425 1.053829196 1.112875066 1.045607673 1.048527508 1.053197551 1.07673314 1.088297398 1.059825105 1.044743921 1.049745501 1.044208279 1.050743873 1.076220099 1.048396791 290890884 amyA Oenococcus oeni AWRIB429 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Leuconostocaceae;genus:Oenococcus;species:Oenococcus oeni; 0.848852296 0.816944729 0.832419316 0.842149801 0.860340921 0.788376279 0.789347861 0.82852942 0.789384583 0.797444393 0.878845132 0.8868547 405128165 tfda Mycobacterium indicus pranii MTCC 9506 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium indicus pranii; 0.83480628 0.865015857 0.850209373 0.823997527 0.797174967 0.806843973 0.854703869 0.836513239 0.812415475 0.792926357 0.817480426 0.839875565 0.857610231 0.852865489 119537012 badh Nocardioides sp. JS614 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 1.001635938 0.99400285 0.946100522 0.995062291 0.923155426 0.980016412 0.947391414 0.961515908 1.018643018 0.987059565 0.993978558 0.961936658 0.89744904 0.952001915 0.893189766 0.935660514 1.000346148 0.997024459 15890595 norb Agrobacterium tumefaciens str. C58 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 1.133640264 1.125888528 1.146568715 1.13993507 1.158777959 1.136637803 1.150236716 1.166127912 1.122102633 1.114376958 1.099017738 1.15005794 1.092852786 1.079414737 1.079027169 1.109614764 1.135965438 1.117522418 359426047 nirb Gordonia amarae NBRC 15530 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia amarae; 1.132197522 1.088387367 1.094871382 1.095880626 1.12800854 1.112303317 1.140364751 1.130093097 1.135941449 1.122253504 1.118052627 1.13009875 1.159800751 1.093312559 1.116385875 1.081529846 1.103370523 1.073543219 219859801 xyla Arthrobacter chlorophenolicus A6 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 0.959130855 0.980880994 0.954164249 1.052141032 0.956600445 0.942127107 0.996624525 0.962755925 1.011038526 0.963730676 0.963214939 0.95485604 0.982980417 0.941534746 0.900051249 0.94969862 0.987632414 1.020029276 347578478 FBPase Gluconacetobacter xylinus NBRC 3288 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter xylinus; 0.935547525 0.917268362 0.975883918 0.983566386 1.059797735 0.983369955 0.960728688 1.015740867 0.969949345 0.919378843 0.98175801 0.967873159 0.95334279 0.95220349 1.008046126 0.917358544 0.938605933 0.924275975 396931390 tmoabe Rhodococcus sp. JVH1 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 0.803791684 0.830561708 0.832297432 0.83504082 0.838957583 0.799896458 0.82889746 0.815331903 0.831719658 0.859222123 0.860888271 300112202 ara Schizophyllum commune H4-8 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 0.765065381 0.882340382 0.865589172 0.868019094 0.823128039 0.90762785 0.805507788 0.821812421 0.831388439 0.787391975 0.889434304 0.856592572 0.861942743 93356493 proO Ralstonia metallidurans CH34 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 1.220569548 1.225462398 1.202462651 1.221363032 1.206926212 1.244417378 1.203571758 1.203999215 1.199070117 1.207860325 1.221428713 1.213695805 1.202367942 1.15215699 1.134594471 1.171749092 1.242383196 1.208297598 377573912 amyA Mobilicoccus pelagius NBRC 104925 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dermatophilaceae;genus:Mobilicoccus;species:Mobilicoccus pelagius; 1.046259816 1.058315997 1.053224491 1.013844458 0.978855817 1.034392502 1.00123872 1.010373511 1.011482165 1.05552884 1.012379669 1.010759316 0.980938904 1.095694767 0.964038696 0.993653735 1.024199225 1.05516915 149828 cellobiase Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Thermobispora; 0.858089614 0.84526805 0.880337551 0.840730602 0.841451289 0.855238078 0.889077803 0.808151359 0.853729971 0.840888964 0.870513959 0.840569983 0.887567878 333806756 arylest Methylomonas methanica MC09 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylomonas;species:Methylomonas methanica; 1.001443078 0.9439542 0.946589536 0.968837468 0.948922983 0.944492428 0.939576013 0.967857481 0.989706379 0.957369894 0.979683231 0.956199399 0.894952166 0.884868057 0.886011048 0.921870631 0.929715209 0.911131644 14024312 glucoamylase Mesorhizobium loti MAFF303099 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 1.039705 1.000643138 0.975145805 0.929837211 0.977633601 0.930145573 0.96702884 0.984824461 0.992531689 0.993409442 1.000678758 0.981982133 0.909058101 0.938580512 0.891551532 0.919114212 0.97609326 1.03723729 328809664 endoglucanase Verrucosispora maris AB-18-032 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Verrucosispora;species:Verrucosispora maris; 0.807090516 0.854812048 0.850780341 0.803711946 0.887396452 0.820569744 0.837991936 0.821099049 0.819518936 0.865733928 0.93692436 0.800090462 0.844037208 0.84739952 239800012 amyA Variovorax paradoxus S110 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 0.81511586 0.850544255 0.838972955 0.875322038 0.818324414 0.821485271 0.807473695 0.857353767 0.901577868 355336228 one_ring_12diox Pseudoxanthomonas spadix BD-a59 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Pseudoxanthomonas;species:Pseudoxanthomonas spadix; 0.866287985 0.828247993 0.881627751 0.85466093 0.884840793 0.904447693 0.869278438 0.87124039 0.849023763 0.849620043 0.868021298 0.876817706 0.814906939 0.807347515 0.809812066 0.894595688 0.855611562 84388607 GAPDH_Calvin Oceanicola batsensis HTCC2597 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola batsensis; 0.840634198 0.878668229 0.864785813 0.908258266 0.842692912 0.857497946 0.860887085 0.886398834 0.882317186 0.879524978 0.880895471 0.901084923 85670420 phn Roseovarius sp. 217 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 0.865254846 0.829542669 0.803332586 0.800615947 0.806122 0.829622497 161390777 soxY Roseobacter litoralis Och 149 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter litoralis; 0.9455473 0.955135014 0.883933155 0.983661523 0.963652168 0.95158134 0.941273152 0.982520412 0.966288477 0.95535664 0.955322625 0.986926297 0.914280703 0.918907886 0.889787846 0.960990777 0.945366778 0.954142289 84500486 FBPase Oceanicola batsensis HTCC2597 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola batsensis; 1.245898807 1.289836878 1.235337542 1.21084644 1.229823279 1.293424945 1.200492794 1.192413432 1.188833825 1.235574425 1.22915094 1.194775358 1.197836475 1.226277793 1.205235946 1.189297765 1.244506069 1.255173742 154000099 nifh Candidatus Methanoregula boonei 6A8 Nitrogen Nitrogen fixation NA superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;genus:Methanoregula;species:Methanoregula boonei; 0.949460779 0.860048541 0.879093246 0.922926853 0.929984673 0.855818891 0.862119559 0.869766797 0.890240782 0.884508584 0.986909434 0.818982851 0.886614852 0.842368633 0.832108587 0.832658042 0.886008431 0.902730208 76056963 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.331211463 1.319842772 1.309222458 1.304116833 1.285144614 1.32942537 1.281793888 1.299815945 1.281915927 1.279749287 1.310783026 1.308140323 1.291687047 1.287713673 1.296658892 1.298477611 1.321076943 1.309586266 240015518 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.811313849 0.836337863 0.811544396 0.861954884 0.811362096 0.826085637 0.840895649 0.868021191 78093574 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.958275988 0.994392217 0.962671554 0.941290459 0.918444536 0.958571387 0.877328896 0.915912794 0.947411079 0.926541689 0.958550149 0.897740375 0.928293067 0.926398652 0.854639028 0.923479567 0.950557648 0.973437391 255341452 cda Flavobacteriaceae bacterium 3519-10 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae; 1.006012489 0.939936796 0.901713699 1.050800763 0.966626789 0.936353883 0.881258053 0.965016556 0.933907802 0.898840207 0.93042857 0.884697361 0.845439441 0.857899267 0.882460028 0.880565025 0.848893751 0.929487504 76577410 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.98014342 0.892994433 0.939749601 0.899183233 0.883915466 0.920481088 0.902793815 0.929811173 0.88761219 0.940857825 0.934128093 0.892108813 0.927406419 0.968353038 0.926614264 0.922848209 0.886409887 0.965722967 302035416 pchcf Candidatus Nitrospira defluvii Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Nitrospirae;class:Nitrospira;order:Nitrospirales;family:Nitrospiraceae;genus:Nitrospira; 1.275629646 1.227891172 1.255702891 1.266047731 1.242801125 1.282417421 1.248852919 1.279002961 1.243066541 1.249984728 1.268335748 1.260713502 1.233600973 1.242833256 1.238045823 1.258669468 1.255008928 1.225813116 148750447 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.986984089 0.989427612 1.031285392 0.993954444 1.011445902 1.010317965 0.996045543 0.976162825 0.973077176 0.970686327 1.002392287 0.949260414 0.924132068 0.911478998 0.910528976 0.891897944 0.974058273 1.003796274 21217673 rubisco uncultured bacterium Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria; 0.768264886 0.787291659 284032965 chitinase Kribbella flavida DSM 17836 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Kribbella;species:Kribbella flavida; 1.241826066 1.280108503 1.242539782 1.242780762 1.230396487 1.26526403 1.204877561 1.248229794 1.198472739 1.233399109 1.230436342 1.235646012 1.209045951 1.188502928 1.176428199 1.174859624 1.26161159 1.244210713 163802442 ppx Vibrio campbellii AND4 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 0.879688433 0.870068625 0.824004848 0.896499513 0.843722755 0.848516074 0.87447888 0.895822924 0.81841561 0.792116393 0.824267597 0.834979537 0.832452155 0.850478184 0.85698889 34604742 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.96616996 0.950355544 0.958825779 0.946724144 0.876516237 0.926709821 0.871742265 0.900926253 0.971540352 0.901204223 0.924030596 0.885764407 0.928193852 0.875128718 0.862307715 0.841091027 0.937470149 0.941267254 331698085 linb Pseudonocardia dioxanivorans CB1190 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Pseudonocardia;species:Pseudonocardia dioxanivorans; 1.185220601 1.186147965 1.128382258 1.139847977 1.112187535 1.168919511 1.106096032 1.110015156 1.126705606 1.114657147 1.118224845 1.125362235 1.101934347 1.111225441 1.105593802 1.139282407 1.15868697 1.139697745 219995062 amyA Thioalkalivibrio sulfidophilus HL-EbGr7 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio;species:Thioalkalivibrio sulfidophilus; 0.953713915 0.974154671 0.950102215 0.965145091 0.972837938 0.991725508 0.934612215 0.956309478 0.937030442 1.010120474 0.96294393 0.979833751 0.953059397 1.004453156 0.956086446 1.045700043 0.952704057 0.999801135 336068507 fthfs Prevotella multisaccharivorax DSM 17128 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella multisaccharivorax; 0.862601699 0.792376029 217970264 GAPDH_Calvin Thauera sp. MZ1T Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Thauera; 1.160211138 1.166527263 1.146035715 1.114777471 1.150572683 1.186012738 1.124282632 1.092524147 1.134745568 1.159352725 1.174157185 1.158537613 1.142050288 1.15395209 1.111784989 1.145533087 1.15183388 1.163926581 109452498 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.980712208 0.92041952 0.93191854 0.96530852 0.940515204 0.909420113 0.93863802 0.949642168 0.93078886 0.977146437 0.953394512 0.993156122 0.903816499 0.890312757 0.880060119 0.884460041 0.982727906 0.9269549 381357620 nirk Bradyrhizobium sp. S23321 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.797331075 0.826879255 0.777555175 0.798026662 0.785352035 0.812752501 29610420 ara Streptomyces avermitilis MA-4680 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 1.034992433 0.975103146 1.013633931 1.027519432 1.062759354 0.997747443 1.013172365 1.059048174 1.000567564 0.97533255 1.008236583 1.034581142 0.942918072 0.989804524 1.167926224 0.969130579 0.993842047 0.997998539 112803043 ppk Campylobacter curvus 525.92 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter curvus; 0.833480314 0.850062366 0.882900659 0.818040621 0.914398699 0.809681081 0.847295422 0.870676378 0.856910029 0.806227341 0.860214446 0.918005669 0.841258721 247543429 cysJ Paenibacillus sp. JDR-2 Sulfur Reduction NA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 1.052049656 1.068852134 1.006160383 1.046674925 0.972988688 0.940747236 0.955795018 0.986282672 1.025488012 1.0032467 0.988834452 1.023493259 0.967099513 0.941131792 0.970772661 1.005451987 1.016931307 0.973744124 353196786 mannanase Paenibacillus lactis 154 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus lactis; 0.930990455 0.878613346 0.975584374 0.95172269 0.954374201 0.991090732 0.895538214 0.916518122 0.899114583 0.93735006 0.88053173 0.951515161 0.919619552 1.082608013 0.98753226 0.919142713 0.942158613 0.978495678 88062456 dsra uncultured Desulfohalobiaceae bacterium Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfohalobiaceae; 1.137666433 1.092345641 1.095790994 1.111385411 1.083481234 1.072232852 1.069636865 1.080870878 1.098140134 1.055855745 1.001444581 1.127762015 1.000011428 1.016638491 0.992005515 1.019328644 1.118816995 1.085979196 357596214 xylj Novosphingobium pentaromativorans US6-1 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium pentaromativorans; 1.542288916 1.521284043 1.496682189 1.524549577 1.500659946 1.520151116 1.48790081 1.512821855 1.499274662 1.487201051 1.486556796 1.520847225 1.471341191 1.464348285 1.476797242 1.494447787 1.508835969 1.478886351 118027455 mhpa Burkholderia phymatum STM815 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 1.074016041 1.091107307 1.062220149 1.047280058 1.066920148 1.113648104 1.008469191 1.035136414 1.052599501 1.041134135 1.042274436 0.990314083 1.075784346 1.069149018 1.048331891 0.99297587 1.084712927 1.091190097 317123617 amyA Intrasporangium calvum DSM 43043 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Intrasporangium;species:Intrasporangium calvum; 0.918052181 0.935121786 0.920600116 0.92877874 0.932180572 0.961325472 0.963189585 0.891189721 0.891403381 0.945459904 0.949762991 0.932501372 0.904440713 0.930809968 0.926069864 0.941284465 0.937251021 0.914981321 383772618 alkk Bradyrhizobium sp. S23321 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 1.338869509 1.340277704 1.333472058 1.318279915 1.310885658 1.358038919 1.307047104 1.316253275 1.296621012 1.318777338 1.299181085 1.300783899 1.286451303 1.300530633 1.272669714 1.306211613 1.330462731 1.335459463 33520805 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.9058147 0.921145874 0.821796391 0.911818844 0.879244254 0.84950892 0.866379705 0.826794781 0.89799215 0.909322889 0.802687993 0.833281044 0.822573899 0.84196338 0.868450793 0.878124057 0.938594253 383333436 amyA Mycobacterium xenopi RIVM700367 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium xenopi; 1.143631287 1.136938534 1.110207516 1.097141813 1.134403396 1.179473628 1.128414824 1.169102406 1.100851388 1.100858497 1.112968033 1.111954611 1.136039575 1.115938647 1.077777465 1.138619591 1.123325734 1.153436669 82735823 vdh Pseudomonas putida F1 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 1.236440552 1.152096611 1.182443023 1.16925017 1.151187892 1.175450174 1.100205453 1.147997763 1.191148639 1.171295231 1.163894458 1.179098127 1.161396815 1.170492785 1.129317966 1.170461242 1.194687867 1.168295984 339885144 amyA Actinomyces sp. oral taxon 448 str. F0400 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 448; 1.214087295 1.199563289 1.208355857 1.232078048 1.201570958 1.206991391 1.207360406 1.238436647 1.225092125 1.207420122 1.243053683 1.236094449 1.211180324 1.195442134 1.20308034 1.202931528 1.20356339 1.160780402 256396075 amyA Catenulispora acidiphila DSM 44928 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 0.949735969 0.940683942 0.90081344 0.984795141 0.857907021 0.896338044 0.876412281 0.907931829 0.982862378 0.909556815 0.923835534 0.907474663 0.849036736 0.906660468 0.856223733 0.90202654 0.962462052 0.964527824 158523522 dsra uncultured bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.233307632 1.207769759 1.207376069 1.250762187 1.222148679 1.230339803 1.204642553 1.217944154 1.218334421 1.227497402 1.20571466 1.212125515 1.19837623 1.198557309 1.190909909 1.218336146 1.200380983 1.23520034 341614895 B_lactamase_A Citromicrobium sp. JLT1363 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Citromicrobium; 0.83232299 0.816290525 0.811686426 0.882822213 320335312 amyA Deinococcus maricopensis DSM 21211 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus maricopensis; 0.880229857 0.836711696 0.868090913 0.846162593 0.888032328 0.860971859 0.890338246 0.886048148 0.854418693 0.889977664 0.865517865 0.866899534 0.833609194 0.868276493 0.867927809 315620456 CsoS1_CcmK Pseudoramibacter alactolyticus ATCC 23263 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Eubacteriaceae;genus:Pseudoramibacter;species:Pseudoramibacter alactolyticus; 1.404434047 1.398381529 1.396719344 1.389557778 1.384381803 1.406318307 1.373187763 1.372577823 1.381318886 1.393885398 1.379938189 1.367200354 1.366439214 1.389876625 1.36528065 1.390056477 1.373588744 1.384110468 350544173 amyA Candidatus Burkholderia kirkii UZHbot1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Candidatus Burkholderia kirkii; 0.977519763 0.9912122 1.037322883 0.980215649 1.012106953 1.03560629 1.000507259 0.942007366 0.983153093 1.000611519 1.020659591 0.976847137 0.993256267 1.019392025 1.010214332 0.993701228 1.023201524 0.962421015 219541152 ccmL Desulfitobacterium hafniense DCB-2 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 1.066901895 1.024448 1.084722989 1.037778934 1.05235907 1.066106371 1.046647719 1.07996535 1.045814868 1.00574548 1.013823911 1.041108509 1.00976361 0.982436106 0.962666533 0.975385858 1.067956687 1.034499299 75234470 urec Escherichia coli E110019 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia coli; 0.823504855 0.809678839 0.837787369 0.866889428 0.848399479 0.866650224 0.876577644 0.862167969 0.817788563 0.849922537 0.813295684 0.835213364 0.805813591 0.822546918 0.826375816 0.83403688 156255109 napa Pseudomonas sp. MT-1 Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 1.09141487 1.111529483 1.108109123 1.091155295 1.106397185 1.114477374 1.099497401 1.109156047 1.090139184 1.11006339 1.097346843 1.120560842 1.097098516 1.09972506 1.101330801 1.108615523 1.072415806 1.112107627 359783427 GAPDH_Calvin Pseudomonas psychrotolerans L19 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas psychrotolerans; 1.037067017 1.015449891 1.003793248 1.074649838 1.009598495 1.018498421 1.011691452 1.052966884 1.039458105 0.981557957 1.013227466 1.014489709 0.978732068 0.984556157 0.923740074 0.940708007 1.061500073 1.045102327 345570385 ara Arthrobotrys oligospora ATCC 24927 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Orbiliomycetes;order:Orbiliales;family:Orbiliaceae;genus:Orbilia;species:Arthrobotrys oligospora; 0.98605966 0.953516001 0.943600692 1.063362218 0.991571629 0.947626227 0.95614707 1.005722332 1.008005864 0.972676874 0.9509667 1.036799013 0.963526105 0.969990006 0.953895668 0.94328492 0.979645271 0.967524295 237625017 bphd Thauera sp. MZ1T Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Thauera; 0.784853817 0.865104771 0.813770975 56312562 badk Azoarcus sp. EbN1 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 0.944440847 0.931420837 0.968803571 0.993050303 0.898770295 0.952290239 0.926609215 0.94999025 0.956949186 0.931013528 0.915974171 0.92035376 0.897433388 0.934662033 0.89761051 0.900580645 0.956186415 0.961728437 242784870 cellobiase Talaromyces stipitatus ATCC 10500 Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 1.059122109 0.961922641 0.903297482 0.905879219 0.963019007 0.882434673 0.95898505 0.960835175 0.996500339 0.97653214 1.058067364 0.994271604 0.937682424 0.901605763 0.898708902 0.935259321 0.93650833 0.929753459 260421898 FBP_aldolase Citreicella sp. SE45 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Citreicella; 1.035356801 1.055327807 1.003815867 1.0526554 1.003241838 1.051648584 0.990105397 1.00311234 1.021689236 1.035730647 0.97577148 1.008716045 0.965306046 0.992080638 0.94464682 0.973248822 1.047946181 1.056257184 29341468 RgaE Bacteroides thetaiotaomicron VPI-5482 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides thetaiotaomicron; 0.877100093 0.848919614 0.865355584 0.881883349 0.791697955 0.804774649 0.84427295 0.897159852 0.864197159 0.828799045 0.826743587 0.836026655 0.82622504 0.884098142 0.893995124 389890573 amyA Bifidobacterium bifidum BGN4 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium bifidum; 0.846234305 0.821021778 0.819919337 0.920892897 0.903770446 0.819525681 0.911769876 0.842159236 0.844039912 0.858453067 0.84760041 0.856366266 0.799418639 0.82620214 0.809678395 0.864123912 0.861863983 359732558 pcpe Rhodococcus pyridinivorans AK37 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus pyridinivorans; 0.891611323 0.963190943 0.871780393 0.933891734 0.894382842 0.948177609 0.906083367 0.900195429 0.882354725 0.900202462 0.889066294 0.910897442 0.888735261 0.83707821 0.913610528 0.877622697 0.88567266 0.855499988 359317519 bend Gordonia polyisoprenivorans NBRC 16320 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia polyisoprenivorans; 0.843724449 0.824217841 0.818152004 0.89654118 0.85132483 0.849903944 0.808765856 0.826480876 0.845319085 0.815301152 0.834544534 0.825045647 0.847207741 0.865278446 0.831625426 0.883056924 0.866163874 298554866 amyA Gloeobacter violaceus PCC 7421 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Cyanobacteria;class:Gloeobacteria;order:Gloeobacterales;genus:Gloeobacter;species:Gloeobacter violaceus; 1.082409429 1.069683249 1.025923916 1.048956503 1.035341504 1.053440275 1.021382194 1.049526505 1.037213006 1.023341371 1.048895143 1.044134229 1.033520106 1.033087551 1.017324679 1.018197788 1.061754101 1.067212746 156233303 amyA Roseiflexus castenholzii DSM 13941 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus;species:Roseiflexus castenholzii; 0.77875989 0.858691685 0.846236252 0.786771906 0.830285564 0.843392638 0.791348211 0.87284301 283440468 xyla Pirellula staleyi DSM 6068 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Pirellula;species:Pirellula staleyi; 0.823430688 0.819423302 0.834091782 0.798516288 0.853260097 0.811066011 0.792637596 0.813005785 354585050 RgaE Paenibacillus lactis 154 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus lactis; 0.768075429 0.827399316 0.835869671 0.850295113 0.882367568 0.811395721 0.872609036 0.851495421 0.844781913 0.806863357 0.820578177 0.801073753 0.82266252 0.778036784 0.814519333 398397217 pcpe Zymoseptoria tritici IPO323 Organic Remediation Herbicides related compound NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Capnodiales;family:Mycosphaerellaceae;genus:Zymoseptoria;species:Zymoseptoria tritici; 1.189851462 1.166195604 1.15259893 1.194709106 1.145086371 1.163281076 1.136837232 1.150070842 1.171905122 1.158304655 1.166571624 1.170138773 1.135743181 1.137996001 1.157464174 1.163319835 1.175415489 1.111520756 373253270 acetylglucosaminidase Nesterenkonia sp. F Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Nesterenkonia; 0.965839499 0.970406741 0.96630509 0.999876883 0.97368822 0.940845502 0.952217872 0.953895642 0.956070645 0.973337486 0.968126692 0.951299093 0.974647511 0.893789159 0.904621932 0.914339826 0.993434863 0.955252177 323495488 PRK Vibrio sinaloensis DSM 21326 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio sinaloensis; 0.747774048 0.789094979 0.808298508 0.798870891 0.791729788 375057677 TIM Rhizobium sp. PDO-076 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 1.031687798 0.984915003 1.040225605 1.039051164 1.030482696 1.024312322 0.975355623 1.025444426 1.064808115 0.98754734 0.988578079 1.086551685 0.976470163 0.975312098 0.983302795 1.011923218 1.120948143 0.995914643 295698875 tktA Burkholderia sp. CCGE1002 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 1.108180177 1.025734655 1.064441368 1.076786169 1.060559194 1.068574201 1.079015265 1.093871172 1.080859343 1.055861752 1.062117586 1.072331826 1.01452302 0.986850356 0.976218179 1.035279897 1.100228519 1.068828078 91802555 CsoS2 Nitrobacter hamburgensis X14 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter hamburgensis; 1.360808725 1.327966899 1.319975049 1.354611867 1.334274302 1.322532255 1.340290114 1.336085378 1.345145296 1.300761101 1.321883567 1.327293225 1.303828445 1.259939835 1.273650293 1.282027008 1.338306466 1.30973612 359836370 chnb Actinoplanes sp. SE50/110 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes; 0.87419404 0.888777154 0.876818865 1.009787927 0.885161686 0.849636987 0.857200347 0.873199276 0.841221665 0.839642074 0.859296966 0.820858337 0.858453471 0.844046415 0.837169706 0.903903949 0.924261242 63081858 nosz unidentified bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.112696542 1.139016254 1.100969487 1.102938766 1.079738844 1.109127193 1.089159718 1.083925697 1.0744434 1.065771996 1.064652921 1.08757343 1.096955161 1.080151904 1.059459906 1.100617191 1.120420908 1.100550579 261364429 ppx Neisseria mucosa ATCC 25996 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria mucosa; 1.029141827 1.066317645 1.0973183 1.086045412 1.103142287 1.083145228 1.088884803 1.084268166 1.081574505 1.040377445 1.073938387 1.080477982 1.050431572 1.051800415 1.047348697 1.0240271 1.050767402 1.050079082 170690694 B_lactamase_A Burkholderia graminis C4D1M Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia graminis; 0.818985111 0.857899326 0.892360909 0.807972236 0.803766127 0.859064362 0.846970288 0.844701682 0.841572939 0.829651869 0.87940401 381398165 mult_ring_12DiOx Microbacterium laevaniformans OR221 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Microbacterium;species:Microbacterium laevaniformans; 1.001156151 0.9090225 0.885248894 0.919019232 0.830486353 0.863359866 0.854853102 0.896856089 0.912000269 0.906000348 0.822783914 0.883991537 0.818571792 0.857736698 0.818482641 0.866507051 0.981262859 0.949129471 356663179 bphd Rhodococcus opacus PD630 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus opacus; 1.169285198 1.088690079 1.100420675 1.098486341 1.117391026 1.113211021 1.129723036 1.112032014 1.11700679 1.103813865 1.095228779 1.119462111 1.094463239 1.051724147 1.072537078 1.050194639 1.125053442 1.051512098 85672174 mer Roseovarius sp. 217 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 0.905729693 0.898009307 0.890067083 0.918526105 0.880939744 0.91102579 0.884145144 0.901679215 0.938095439 0.891435877 0.889354461 0.914156236 0.881654465 0.843756054 0.861131718 0.875908241 0.895167939 0.926164919 84691528 arsc Parvularcula bermudensis HTCC2503 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Parvularculales;family:Parvularculaceae;genus:Parvularcula;species:Parvularcula bermudensis; 1.058543043 1.055765456 1.065732225 1.07216283 1.035835742 1.104284645 1.025326183 1.060766776 1.048101548 1.097798594 1.032732257 1.051503239 0.999967083 1.063314591 1.00172204 1.023648512 1.065238692 1.046612308 260577547 amyA Corynebacterium jeikeium ATCC 43734 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium jeikeium; 0.928180158 0.789075629 0.787138204 0.779602681 0.794245763 0.77095999 0.82191646 353544351 tktA Fischerella sp. JSC-11 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Cyanobacteria;order:Stigonematales;genus:Fischerella; 0.902180647 0.863176178 0.84178682 0.868303248 0.884128179 0.905198556 0.844809684 0.887197132 0.854198631 0.865427157 0.870944244 0.860141872 0.841667241 0.844460175 0.949734032 0.891515102 332531397 FBPase Hylemonella gracilis ATCC 19624 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Hylemonella;species:Hylemonella gracilis; 0.863885345 0.928736268 0.921654085 0.891096159 0.880181139 0.911573741 0.863700615 0.829281869 0.884612082 0.832765562 0.823238372 0.824656094 0.849916897 0.863691631 0.856456429 0.889491275 0.923927335 340346860 amyA Prevotella dentalis DSM 3688 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella dentalis; 0.885529587 0.877735988 0.896029681 0.95244663 0.923517583 0.891847042 0.896975062 0.925626728 0.907486501 0.892551803 0.894661168 0.909487844 0.894375971 0.874713648 0.872180377 0.853423421 0.900089365 0.884513496 334135030 chitinase Paenibacillus sp. HGF7 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 1.06161155 1.056364391 1.029849736 1.094280288 1.031421891 1.093639961 1.004071428 1.019629787 1.06262795 1.048019533 1.047767709 1.05143255 1.035277411 1.012013818 1.018482612 1.042348683 1.075832507 1.05897877 114197670 amyA Aspergillus terreus NIH2624 Carbon Cycling Carbon degradation Starch superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 0.929658043 0.960475062 0.912818233 0.974108163 0.952589819 0.926919738 0.924251797 0.904327339 0.968491559 0.880111351 0.92355415 0.882991349 0.85253891 0.885032456 0.85455756 0.885738667 0.974981813 0.978895529 7839576 linc Amycolatopsis mediterranei Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis; 1.135702805 1.117669339 1.083067879 1.103885876 1.050765712 1.091588306 1.060875846 1.073380519 1.108674614 1.083772646 1.064535114 1.110374052 1.037546962 1.056548774 1.074789207 1.091455197 1.093423777 1.118207457 218439569 nitro Cyanothece sp. PCC 7424 Organic Remediation Others NA superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 0.95579158 0.963398003 0.923022766 0.947949665 0.935448612 0.926772909 0.885462369 0.893091455 0.934608301 0.917874085 0.924195586 0.902862048 0.900507837 0.852512288 0.93261996 0.899343641 0.950493135 0.919976473 424917256 nosz Rhizobium leguminosarum bv. trifolii WSM597 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 0.819998532 0.826399389 0.852135845 0.847856817 0.878154262 0.866836021 0.871059583 0.897423799 0.83540438 0.863451635 0.861828936 0.862100637 0.855969052 0.838047471 0.814721893 0.851111661 0.828656929 0.880108559 333931182 amyA Serratia plymuthica AS9 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia plymuthica; 1.146878807 1.116947754 1.117579611 1.152356448 1.127788514 1.147208334 1.128465246 1.089810486 1.099160213 1.134120748 1.113392266 1.162264929 1.109399681 1.072506655 1.102247345 1.125518584 1.109088419 1.079535457 47572357 phn Rubrivivax gelatinosus PM1 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 0.818793262 0.879892151 0.879010808 0.882225356 0.951436499 0.907027054 0.903520169 0.890446413 0.886615906 0.884624845 0.896115258 0.943518443 0.850293799 0.843147458 0.810174774 0.869938635 0.91439817 333386353 cda Centipeda periodontii DSM 2778 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Centipeda;species:Centipeda periodontii; 0.857732875 0.868700169 1.145044775 0.886275946 0.893443728 0.880159264 0.884780102 0.872494614 0.875559019 1.151329768 0.856521466 0.840957706 0.801831149 0.81719138 0.797236398 0.89376687 0.960736258 78093522 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.223271582 1.217656567 1.19742051 1.209928008 1.175996015 1.233381931 1.150036527 1.179550818 1.18055128 1.180976709 1.183422698 1.187212735 1.173114309 1.203191732 1.120235809 1.173509292 1.220842996 1.207767898 161159688 ppk Sorangium cellulosum 'So ce 56' Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 0.766604698 0.838973766 284176970 pcpe Pseudomonas sp. 1-7 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.812309629 0.900205579 0.88382819 0.890623998 0.888158386 0.926352466 0.888916048 0.891877441 0.856146344 0.932155354 0.893461563 0.914704716 0.917701405 0.86182094 0.886361643 0.925403307 0.889563439 0.89815469 85823695 one_ring_12diox Roseobacter sp. MED193 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 0.893427459 0.906383001 0.862946833 0.81667031 0.830656222 0.892521118 0.801573772 0.809474612 0.899775121 0.795661105 0.877936839 315279644 amyA Paenibacillus vortex V453 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus vortex; 0.831930178 0.812781775 0.839359364 0.845668815 0.817583383 0.787264037 0.863487517 0.80528931 0.856051792 0.803343397 0.827179321 0.841625335 0.817330267 384072996 mer Halobacillus halophilus DSM 2266 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Halobacillus;species:Halobacillus halophilus; 0.880409466 0.826184791 0.9057008 0.878664076 0.883049666 0.85099289 0.87993077 0.880990343 0.840452044 0.895573004 0.857056215 0.869768328 0.864693692 0.827932506 0.857437547 0.902672553 0.838735912 0.887511809 310799874 exopolygalacturonase_fungi Glomerella graminicola M1.001 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Glomerellaceae;genus:Glomerella;species:Glomerella graminicola; 1.084339661 1.078968551 1.1051968 1.119908855 1.103977128 1.118281806 1.117993886 1.121073828 1.116960137 1.090238069 1.061709425 1.071895375 1.078482559 1.043960946 1.005464489 1.038438099 1.076264281 1.076990035 288934154 CsoS1_CcmK Klebsiella variicola At-22 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella variicola; 1.028538933 0.992099742 1.005103067 0.98145719 0.950156561 1.002460911 0.939523994 0.955094528 0.968358392 0.975823852 1.010258171 0.938039834 0.966812649 0.986831397 0.985160131 0.970478008 0.946632371 0.988894841 325281074 acetylglucosaminidase Odoribacter splanchnicus DSM 20712 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Odoribacter;species:Odoribacter splanchnicus; 0.890476252 0.867274365 0.829923952 0.854789863 0.85167058 0.884544833 0.827705639 0.853514921 0.876870258 0.840541901 0.855692779 0.806313538 0.885286778 0.860955786 0.848046616 0.869009567 374428620 amyA Halomonas sp. H11 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas; 1.028734528 1.035439263 0.965242719 1.036550265 0.991928891 1.024739024 0.964443643 0.97940768 1.021699452 1.001311343 0.977834573 0.998295302 0.96962162 0.96163354 0.937476097 0.987845558 1.017837263 0.995589269 320528967 atza Selenomonas artemidis F0399 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas artemidis; 0.823001098 0.820492868 146409734 amyA Bradyrhizobium sp. BTAi1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.812983838 0.797101163 0.851676643 0.802920514 0.901988097 0.860043151 0.826589707 0.767031782 381399991 chne Microbacterium laevaniformans OR221 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Microbacterium;species:Microbacterium laevaniformans; 0.940728306 0.804298628 0.847473384 0.786487372 15625036 soxY Rhodovulum sulfidophilum Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodovulum; 1.155445668 1.177545197 1.120370512 1.109570113 1.132827991 1.162500867 1.146696676 1.128441209 1.158424596 1.154524422 302546012 amyA Streptomyces hygroscopicus ATCC 53653 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces himastatinicus; 1.226385053 1.162190948 1.162343204 1.2249104 1.152897532 1.199048542 1.141978215 1.193526007 1.247660693 1.153683588 1.16545896 1.191130857 1.156964736 1.139284913 1.145440855 1.182742092 1.212776959 1.146333501 241320474 nosz Neisseria flavescens SK114 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria flavescens; 0.905887171 0.886651529 0.861563432 0.912040958 0.898370366 0.845580165 0.929904792 0.864462531 0.914965449 0.909736266 0.913336854 0.92916455 0.856069233 0.870515299 0.818665792 0.886089001 0.921982788 0.854963474 70985695 phytase Aspergillus fumigatus Af293 Phosphorus Phytic acid hydrolysis NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Aspergillus fumigatus; 1.107493947 1.182575303 1.168544811 1.036355552 0.994685815 1.0688063 0.984768204 1.107175061 1.080929788 1.018128385 1.085413035 1.047782519 0.988988774 1.019817929 0.967178539 1.02402457 1.049725954 1.096155443 78693666 proO Bradyrhizobium sp. BTAi1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.959921273 0.91352192 0.956511523 0.995553281 0.93077213 0.894296804 0.893328219 0.909332405 0.951030132 0.940882214 0.92099242 0.951778787 0.920397784 0.897332406 0.889949268 0.907290193 0.94234688 0.901237399 239824148 phn Ochrobactrum intermedium LMG 3301 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum intermedium; 0.928556129 0.944154092 0.948710968 1.034510417 0.943783047 0.913185602 0.970366411 0.958676664 0.958256326 0.901994208 0.891139729 0.971629532 0.910115536 0.884423835 0.887885241 0.909930247 0.93106421 0.866656348 354815873 CsoS1_CcmK Clostridium citroniae WAL-17108 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium citroniae; 0.891174712 0.893332206 0.893293786 0.888525549 0.937823168 0.911699397 0.914694909 0.928966013 0.865456001 0.905123833 0.919126588 0.924836814 0.91145721 0.886564061 0.816450385 0.869013968 0.910871542 0.870154593 148512158 bphF1 Pseudomonas putida F1 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 1.00059234 0.968085094 0.993192471 1.028058012 1.016115422 0.996673215 1.013718598 0.999672445 0.978505778 1.013939249 1.023899465 1.034502232 0.981775614 0.953819091 0.932272314 0.971376998 0.964627927 0.96328579 40747919 pec_Cdeg Aspergillus nidulans FGSC A4 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 0.903131549 0.927023479 0.892659466 0.886814789 0.939882317 0.940057826 0.91775807 0.939348745 0.910414102 0.933651 1.016751945 0.929060455 0.954331737 0.920784534 0.884316249 0.895152765 0.919985549 0.924689193 241190289 fthfs Bifidobacterium animalis subsp. lactis Bl-04 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium animalis; 0.881049655 0.82804988 0.838417568 0.859670372 0.841935278 0.83183998 0.863804715 0.870720638 0.874898181 0.838732835 0.819500671 0.877942171 0.868853492 55791922 catechol_b uncultured bacterium Organic Remediation Aromatics Other aromatics superkingdom:Bacteria; 0.983575128 0.960899435 0.942356331 0.971710625 0.978525496 0.964274974 0.928529161 1.007700119 0.962818543 0.945312417 0.962080407 0.976956916 0.939254339 0.94228175 0.945546592 1.006070425 1.002126035 0.983799335 302344066 arsc Desulfarculus baarsii DSM 2075 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfarculales;family:Desulfarculaceae;genus:Desulfarculus;species:Desulfarculus baarsii; 0.802729507 0.839803034 0.811100289 0.838240115 0.866682853 0.819963881 0.763066149 0.860560292 0.860176972 384040851 aoxb uncultured bacterium Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 1.038348648 1.058177446 1.03562202 1.030059485 1.029523124 1.021222404 1.025813935 1.034498512 1.029382435 1.038309445 1.043437974 1.030529256 1.01259932 1.0055831 0.964541585 0.989906725 1.038205539 1.050328678 160917795 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.099592435 1.098306265 1.074405887 1.091813419 1.0944169 1.142693336 1.053677104 1.09882007 1.107969841 1.104429833 1.073488245 1.067966588 1.071226606 1.082607344 1.010627635 1.071252091 1.083576294 1.103687601 78093568 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.923575717 0.925510324 0.881440174 0.875261867 0.834329374 0.893964136 0.866319334 0.858206411 0.858724348 0.871702983 0.857493502 0.881700087 0.917597183 0.911451482 260597838 ara Cronobacter turicensis Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Cronobacter; 1.135121576 1.120552749 1.101189837 1.119740852 1.132605103 1.110466083 1.145521367 1.044856276 1.098795735 1.12368934 1.111404833 1.084172403 1.112577488 1.076638733 1.043182219 1.084872911 1.106571861 1.103066352 343805654 TIM Marichromatium purpuratum 984 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Marichromatium;species:Marichromatium purpuratum; 0.995783524 1.066115628 1.018419083 0.973529144 1.01913147 0.994883049 1.019603423 1.045250527 1.004793393 0.992800523 0.995475198 0.96090912 0.971495725 0.925174906 0.930635287 0.925035169 0.997591708 0.986486089 190994006 mer Geobacter sp. M21 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 1.586431777 1.570884437 1.555350471 1.522245128 1.541959173 1.581768881 1.536256043 1.537842394 1.536270455 1.53223763 1.543163354 1.548308656 1.519913264 1.514239855 1.558809188 1.560781849 1.554969531 1.529353212 373550441 xyla Mycobacterium tusciae JS617 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tusciae; 0.967757654 0.954300581 0.932635487 0.983996901 0.841693114 0.919056993 0.913025222 0.931871587 0.964272753 0.950766067 0.906153822 0.946924604 0.90769179 0.888786111 0.822094876 0.864066675 0.97562059 0.969843553 139478521 mer uncultured soil bacterium Metal Homeostasis Mercury Detoxification superkingdom:Bacteria; 1.044401249 1.050218281 1.000199783 1.04963134 1.031262509 1.070868161 1.022233711 0.992361761 1.025378554 1.035340614 1.061879448 1.039411534 1.030475659 1.005244085 0.988180016 1.03405978 1.056415044 1.053644348 379065671 b_lactamase Pseudomonas stutzeri ATCC 14405 = CCUG 16156 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 0.79277679 0.821217661 0.80195456 0.840183702 348669269 mannanase Phytophthora sojae Carbon Cycling Carbon degradation Hemicellulose superkingdom:Eukaryota;order:Peronosporales;genus:Phytophthora; 1.081656721 1.116706285 1.072385012 1.084789399 1.059441575 1.099940062 1.061742133 1.079162659 1.063488369 1.078155885 1.054022172 1.058823585 1.062409946 1.078850219 1.047373696 1.059899826 1.095247847 1.07786125 359820695 mmox Mycobacterium rhodesiae NBB3 Carbon Cycling Methane Methane oxidation superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 0.866667436 0.901519303 0.90741866 0.924479457 0.89244811 0.885961645 0.88460455 0.850865625 0.876389799 0.864420803 0.883200661 0.889980938 0.901344549 0.840895062 0.878583359 0.861281003 0.88783885 0.867019427 115519753 hbh Rhodopseudomonas palustris BisA53 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 0.832972513 0.868824131 0.796040877 0.89034304 0.838456029 0.831719936 0.823459652 0.855289427 0.813116897 0.816691397 119384020 tktA Paracoccus denitrificans PD1222 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 1.043338527 1.092527695 1.018035076 1.034056356 1.020522098 1.060963532 1.048250194 1.04425256 0.996820509 1.02975972 0.99960492 1.053772182 0.945757452 0.977634987 0.909390464 0.977226677 1.04930762 1.060379903 332172179 mer Glaciecola sp. 4H-3-7+YE-5 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Glaciecola; 0.978523013 0.938842234 0.930525694 0.963593794 0.958318169 0.945816391 0.962020262 0.950320616 0.927006097 0.939828858 0.932053675 0.890006431 0.899465931 0.862222815 0.848450806 0.841321604 0.929789521 0.956433462 302527766 mdlc Streptomyces sp. AA4 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 0.833817615 0.87553601 0.839361366 0.856006122 0.84320594 0.829844937 0.796501778 0.87800462 0.904355889 302472581 amyA Streptomyces viridochromogenes DSM 40736 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces viridochromogenes; 1.32216762 1.283105246 1.289392254 1.288764998 1.292115098 1.314933878 1.287595488 1.315522157 1.295742495 1.289247876 1.283690684 1.298673333 1.275706208 1.248815091 1.251839697 1.272170715 1.308834689 1.266829242 29605259 catechol_b Streptomyces avermitilis MA-4680 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 1.379927952 1.300499685 1.305040879 1.330605294 1.317541733 1.347015753 1.327077965 1.334532533 1.324933314 1.317183156 1.317980738 1.340096777 1.28920198 1.275990417 1.288327385 1.310123094 1.339362186 1.303442174 2978568 rubisco Riftia pachyptila endosymbiont Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 0.864382441 0.850664675 0.828323201 0.860989205 0.808137523 0.809356334 0.80936339 0.887295856 0.834713326 0.824080467 0.896195325 0.813510932 0.876700843 170768033 narg Escherichia albertii TW07627 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia albertii; 0.867841005 0.850852771 0.904274057 0.887738405 0.891334511 0.946966344 0.91677329 0.862073927 0.893881835 0.907591776 0.908406062 0.880230323 0.870457523 0.872250289 0.867479464 0.802275815 0.888715154 0.87819835 118424484 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.942965734 1.042979426 0.962495807 1.009792117 0.999425658 1.028058072 0.954422436 0.973663681 0.93686393 1.01791302 0.949474359 1.006868123 0.984059707 0.987566172 0.937712264 0.992047642 0.995588489 1.032333251 72121305 catechol Ralstonia eutropha JMP134 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 1.187145368 1.223666854 1.183333709 1.171491225 1.179224682 1.22846996 1.167541485 1.172929664 1.171123632 1.195990998 1.197582117 1.1798226 1.162467433 1.167241702 1.121842241 1.152567749 1.199276785 1.201603519 319754373 phytase Deinococcus maricopensis DSM 21211 Phosphorus Phytic acid hydrolysis NA superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus maricopensis; 1.057648281 1.046873403 1.075330897 1.109240154 1.065418392 1.057088234 1.072474115 1.07696805 1.092446978 1.024694646 1.058411357 1.067391912 0.992755314 0.984352539 0.958491603 0.997820315 1.11232989 1.073142064 83317126 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.912142257 1.080695471 0.969203279 0.950578508 0.929604485 0.961502374 0.867514281 0.890820635 0.862381224 0.949217329 0.917757663 0.933887438 0.965465949 0.898223003 0.921528675 0.901859343 0.96348279 0.954107336 404216911 chnb Gordonia sp. KTR9 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia; 1.012219009 0.98484283 1.054067243 1.044437521 1.015703439 1.032746948 1.047500759 1.035576213 1.031855435 1.011581398 0.994901999 0.99602155 0.972567376 1.049422569 0.936196452 0.983400375 1.068899846 1.031897243 359734746 phn Rhodococcus pyridinivorans AK37 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus pyridinivorans; 0.777833892 0.828141233 0.820351201 0.793222926 0.832742063 0.816990588 62433256 cara Nocardioides sp. IC177 Organic Remediation Aromatics Heterocyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 1.098560491 1.108681709 1.060899709 1.143595851 1.049506841 1.126275936 1.088905596 1.122694878 1.089741371 1.064307147 1.042564516 1.123350432 1.027204339 1.010477436 0.997267831 1.042575832 1.115824499 1.088903368 317166688 glucoamylase Mesorhizobium ciceri biovar biserrulae WSM1271 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium ciceri; 0.920225571 0.913893567 0.88462978 0.875680986 0.880426714 0.859417381 0.866960525 0.855213856 0.881522175 0.849906023 0.864935369 0.897721847 0.857334388 0.815650523 0.848016471 0.88519901 0.909706164 0.910998896 168704683 Sir Gemmata obscuriglobus UQM 2246 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Gemmata;species:Gemmata obscuriglobus; 0.916292079 0.824467192 0.905961146 0.904445504 0.833213962 0.780804977 336320163 amyA Cellvibrio] gilvus ATCC 13127 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas;species:[Cellvibrio] gilvus; 1.381767767 1.360763639 1.321515589 1.315699432 1.296130454 1.355774803 1.301671288 1.30488004 1.300706807 1.315220799 1.321214744 1.318185724 1.297013614 1.309278376 1.271417252 1.31451442 1.322038239 1.306740134 145280645 phenol_oxidase Streptomyces cyaneus Carbon Cycling Carbon degradation Lignin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 0.841847901 0.854030689 0.849301689 0.85610323 0.809879568 0.878012543 0.87364302 0.833559737 0.782377099 0.848084232 0.88372646 0.887748111 0.812696829 0.867238454 29891971 glx Ustilago maydis Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Ustilaginomycetes;order:Ustilaginales;family:Ustilaginaceae;genus:Ustilago; 0.884402825 0.843283348 0.874697254 0.86970773 0.853681072 0.895694584 0.804551355 0.865589023 0.895655002 0.87262102 0.850034496 0.830256916 0.847893692 0.80273258 0.915416603 0.852915593 302540043 cdh Streptomyces hygroscopicus ATCC 53653 Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces himastatinicus; 0.915140761 0.989875434 0.930189771 0.95440292 0.938172646 0.97957405 0.929109648 0.91800263 0.954941998 0.946932411 0.898734619 0.939915527 0.92761858 0.931946307 0.897762594 0.946923619 0.952833855 1.009757875 393720903 arsc Sphingomonas echinoides ATCC 14820 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas echinoides; 1.006763601 1.020313516 1.101115929 0.986408639 0.989727797 1.028650231 0.991466245 0.997129507 0.973662596 0.973826215 1.107588427 1.000517102 0.990733191 0.946354599 0.980781089 0.916836403 1.004542633 1.006422512 294649765 ppk Acinetobacter haemolyticus ATCC 19194 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter haemolyticus; 1.176325732 1.127843466 1.133139506 1.135936347 1.214704869 1.133762683 1.139086192 1.173140977 1.105044831 1.138111718 1.084514815 1.160463317 1.132193367 1.129967288 1.128762358 1.19391825 1.136670476 1.170750167 304438648 amyA Selenomonas sp. oral taxon 149 str. 67H29BP Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas sp. oral taxon 149; 0.996601939 1.008488667 0.978311133 1.012875466 0.942228618 0.979137053 0.940183656 0.95291297 1.018299935 0.970399067 0.965672473 0.93932966 0.942829477 0.959032204 0.929966242 0.92727443 0.991856176 1.021324152 260221958 FBP_aldolase Curvibacter putative symbiont of Hydra magnipapillata Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Curvibacter; 0.840040355 0.838535247 0.800306696 0.82350515 0.836232745 0.874756765 0.782243038 0.892107725 0.797700137 386383823 chitinase Streptomyces tsukubaensis NRRL18488 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces tsukubaensis; 0.853059677 0.81927517 0.821224802 0.816965827 0.856241232 32476822 arsc Rhodopirellula baltica SH 1 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Rhodopirellula;species:Rhodopirellula baltica; 0.784565614 0.786909493 154243973 phn Xanthobacter autotrophicus Py2 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 1.085506363 1.057722647 1.043048957 1.071452634 1.0832203 1.075279331 1.063937203 1.065614678 1.042965219 1.080091 1.041306537 1.077113995 1.023623567 1.020042217 1.012787376 1.01791743 1.06894674 1.088391695 383814878 phn Serratia sp. M24T3 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia; 0.850626676 0.838456357 0.81213206 0.837694383 0.827341131 0.87169102 0.812390021 0.880822619 0.846412004 39935422 nifh Rhodopseudomonas palustris CGA009 Nitrogen Nitrogen fixation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 0.807269358 0.809533521 46307974 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.896460176 0.827502676 0.872917791 0.836320309 0.853891252 0.816729407 0.841327792 0.847248763 0.85751658 0.851497066 0.836238853 0.847104186 0.784029182 0.815070536 0.833808722 0.824252831 21623498 nosz Pseudomonas sp. MT-1 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.82374995 0.802478978 255103802 FBPase Thalassiobium sp. R2A62 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Thalassobium; 0.81270873 0.787553362 229362287 arsc Pseudomonas fluorescens SBW25 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 0.825946111 0.804968585 0.800609131 0.834191958 0.822384077 0.828630805 378822183 tktA Sutterella parvirubra YIT 11816 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Sutterellaceae;genus:Sutterella;species:Sutterella parvirubra; 0.991795109 0.989552284 0.950951913 0.963879233 0.918959125 0.932385458 0.929024689 0.926428308 0.968061654 0.945622001 0.954954684 0.957896072 0.925598692 0.925546826 0.866751969 0.950043307 0.973093836 0.944442246 119377453 soxY Paracoccus denitrificans PD1222 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 0.956866445 0.941553889 0.930160998 0.988176288 0.90388121 0.945313747 0.913890953 0.966134221 0.951714025 0.978540216 0.926268523 0.921885589 0.912045455 0.892160556 0.917338707 0.929189664 0.975888763 0.952865571 372282452 phn Oceanicola sp. S124 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola; 1.406097414 1.305793405 1.290856066 1.316856346 1.296385167 1.301373006 1.253501976 1.260144354 1.279465435 1.284269229 1.266688075 1.304269638 1.294884016 1.26856429 1.257358588 1.25994257 1.313645233 1.259477761 86357581 cysI Rhizobium etli CFN 42 Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 1.154390199 1.114126644 1.131847184 1.149117676 1.126943935 1.141739597 1.127181338 1.1166172 1.129936975 1.114486723 1.131666629 1.126089242 1.130604159 1.089673578 1.093998507 1.075261315 1.13307262 1.0887648 359822543 nhh Mycobacterium rhodesiae NBB3 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 0.811737424 0.830823077 0.807650248 0.820640434 0.851287932 0.827615607 0.829368676 0.801002177 0.829867605 0.789920729 0.80445826 0.847102501 238602074 cellobiase Moniliophthora perniciosa FA553 Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Marasmiaceae;genus:Moniliophthora;species:Moniliophthora perniciosa; 0.820913375 0.868888881 0.877139694 0.88248501 0.911670191 0.892992848 0.918742471 0.86144073 0.843386077 0.884706239 0.863799005 0.886196453 0.850423457 0.866156669 0.931512658 0.854430689 0.889021543 0.900198605 269211326 amyA Actinomyces sp. oral taxon 848 str. F0332 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 848; 0.871511512 0.828729065 0.798712661 0.809639543 0.846614937 0.805722923 0.795168074 0.858546552 0.82411197 385791671 chitinase Fibrobacter succinogenes subsp. succinogenes S85 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Fibrobacteres;class:Fibrobacteria;order:Fibrobacterales;family:Fibrobacteraceae;genus:Fibrobacter;species:Fibrobacter succinogenes; 1.002617382 0.940814677 0.949811425 0.983447335 0.994340252 1.032778471 0.936801471 0.932220005 0.954470762 1.000858136 0.927903937 0.919794243 0.983953684 0.973498201 0.957952549 0.96082332 1.005477093 0.973107484 332336419 arsc Haliscomenobacter hydrossis DSM 1100 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Saprospiraceae;genus:Haliscomenobacter;species:Haliscomenobacter hydrossis; 0.857669218 0.864010879 0.849762973 0.86780473 0.856049286 0.842056485 0.879798782 0.897822697 0.835522144 0.828394128 0.816883243 0.842141802 0.852585244 0.873683571 146409439 nosz Bradyrhizobium sp. BTAi1 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.911333118 0.86591985 0.841292192 0.818517992 0.842724198 0.814170478 0.811668016 0.788855106 0.895508628 0.806036611 0.831599798 392373240 exaa(moxf) Candidatus Methylomirabilis oxyfera Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;genus:Candidatus Methylomirabilis; 0.962028953 0.965552725 0.979409639 0.920370546 0.953466875 0.947602912 0.957948813 0.944942472 0.942409912 0.951680762 0.95489181 0.955619195 0.899430679 0.892290267 0.927339478 0.862657749 0.985881826 0.962928102 86554817 ccmM Synechococcus sp. JA-3-3Ab Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 1.030058486 1.013006019 1.04704271 1.023581094 1.047089392 1.046446301 1.050571134 1.053561821 1.049948676 1.026987351 1.087045246 1.0492281 0.968075801 0.989679046 0.981029595 1.002825783 1.055443443 1.075703617 167772377 fthfs Anaerotruncus colihominis DSM 17241 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Anaerotruncus;species:Anaerotruncus colihominis; 0.895315577 0.823064989 0.871717052 0.797344346 0.858791912 0.878314358 0.836253206 0.829268776 255946099 pme_Cdeg Penicillium chrysogenum Wisconsin 54-1255 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 1.080624041 1.11780101 1.024678978 1.085844632 1.095242905 1.029034559 1.047837966 1.151177316 1.121009546 1.047712627 1.02081289 1.092360883 1.059496489 1.00892874 0.976023694 1.010641882 1.023727504 1.049366078 300074001 ppx Herbaspirillum seropedicae SmR1 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herbaspirillum;species:Herbaspirillum seropedicae; 1.245119868 1.251364717 1.226788482 1.204312589 1.184301399 1.231785141 1.221245083 1.182249449 1.211315515 1.230697984 1.207342384 1.220490317 1.149232884 1.187560491 1.125308494 1.179786134 1.224564252 1.207665183 158279559 mg_chelatase Chlamydomonas reinhardtii Secondary metabolism Pigments Chlorophyll superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Chlorophyceae;order:Chlamydomonadales;family:Chlamydomonadaceae;genus:Chlamydomonas; 1.121727174 1.086320653 1.092381161 1.119421936 1.063111992 1.095329197 1.07869476 1.096778948 1.106288989 1.06071104 1.058605217 1.113125368 1.028303659 1.033952202 1.015248037 1.054594385 1.112310215 1.068085564 33866487 amyA Synechococcus sp. WH 8102 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 1.08376452 1.071151537 1.050223797 1.020503508 0.965669837 1.027975155 0.951151879 0.990614395 1.033505037 1.019093662 1.003162634 1.012448911 0.966445816 1.009507526 1.022075204 0.994596956 1.041847579 1.050270871 61678850 pectinase (pectate_lyase) Pseudomonas viridiflava Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 1.504582967 1.455137453 1.47703215 1.439181869 1.425358192 1.471508885 1.413637324 1.434575955 1.450845721 1.467169731 1.445795015 1.457691657 1.406793139 1.41056853 1.441133661 1.434631011 1.459861534 1.448220941 395772892 poba Streptomyces acidiscabies 84-104 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces acidiscabies; 1.14072028 1.133855243 1.073361514 1.160069858 1.07743952 1.131845052 1.103304512 1.122555883 1.119781743 1.107247325 1.072618705 1.105515427 1.063399554 1.08134572 1.025291051 1.081615317 1.154517232 1.125467694 193214175 frdA_rTCA Chloroherpeton thalassium ATCC 35110 Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chloroherpeton;species:Chloroherpeton thalassium; 0.890180827 0.87649713 0.899011867 0.87698628 0.974769665 0.991501357 1.005853921 0.933221636 0.913218208 0.936742273 0.917823792 0.871883224 0.92440867 0.853879037 0.90443163 0.889455481 0.910953264 257054209 linb Saccharomonospora viridis DSM 43017 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora viridis; 1.163195049 1.095065316 1.094751769 1.105546622 1.079850244 1.105812888 1.09224007 1.05207562 1.091904847 1.034823026 1.063032254 1.086694636 1.063256197 1.020837828 1.085881879 1.049432608 1.068221043 1.05339919 326692560 fthfs Leuconostoc argentinum KCTC 3773 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Leuconostocaceae;genus:Leuconostoc;species:Leuconostoc lactis; 0.784769079 0.838892655 0.81201821 0.860311602 0.835478388 0.842332293 0.818230339 0.826538367 0.831989661 0.862586515 0.821915995 0.842802233 0.840872981 222543198 phytase uncultured bacterium Phosphorus Phytic acid hydrolysis NA superkingdom:Bacteria; 0.868831491 0.820238612 0.781847745 0.800919484 385183709 mdlc Burkholderia sp. Ch1-1 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 1.029582966 0.981987114 0.993699902 1.038474378 0.985775585 1.012741726 1.009334755 1.029238554 0.983880705 0.963999436 0.986702122 1.002811049 0.947366362 0.914357923 0.957847187 0.91725099 1.04852202 1.036166745 177672538 ppx Micrococcus luteus NCTC 2665 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Micrococcus;species:Micrococcus luteus; 1.175671462 1.150473275 1.121838296 1.163969994 1.11105674 1.156272107 1.116329612 1.1452224 1.154980713 1.136325704 1.11343743 1.131433379 1.095250345 1.114809 1.075875147 1.118710577 1.165394994 1.13153376 375103557 FBP_aldolase Burkholderiales bacterium JOSHI_001 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales; 0.885517674 0.877240087 0.862580115 0.919467866 0.849523966 0.853013396 0.858877266 0.890511472 0.869728862 0.834451514 0.815850191 0.903167257 0.819767452 0.81534102 0.80218776 0.833703213 0.891873272 0.872895693 219112735 mg_chelatase Phaeodactylum tricornutum CCAP 1055/1 Secondary metabolism Pigments Chlorophyll superkingdom:Eukaryota;phylum:Bacillariophyta;class:Bacillariophyceae;order:Naviculales;family:Phaeodactylaceae;genus:Phaeodactylum;species:Phaeodactylum tricornutum; 0.853578244 0.805840007 0.803544989 0.86551653 0.825877144 0.837552789 0.838713426 0.872444949 0.863078201 0.804700865 0.834267711 0.811099138 94471103 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.367038633 1.300883964 1.315456429 1.326941668 1.292215669 1.349970836 1.25179252 1.296654817 1.285555588 1.273275371 1.276014184 1.293265967 1.28357411 1.24087619 1.285429005 1.285211972 1.38304343 1.304312451 71383840 nasa uncultured bacterium Nitrogen Assimilatory N reduction NA superkingdom:Bacteria; 0.758233622 0.812315466 0.83458402 0.819816874 0.824231445 0.833965835 0.806680904 0.789168171 193230816 xylanase Botryotinia fuckeliana Carbon Cycling Carbon degradation Hemicellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Botryotinia; 0.859274407 0.897417643 0.844622726 0.85118209 0.839810035 0.879984299 0.869413676 0.83768137 0.85636709 0.84483698 0.889665547 0.834867227 0.896681388 0.902377623 311108701 xylg Achromobacter xylosoxidans A8 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter;species:Achromobacter xylosoxidans; 0.948339184 0.9359154 0.92042943 0.938543882 0.896789118 0.942702765 0.915996678 0.934913697 0.929632062 0.949922965 0.903487316 0.904257424 0.859346249 0.915552266 0.844733575 0.889776374 0.948368569 0.965366646 46307864 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.978923193 0.994361318 0.971456539 0.966173331 0.953956905 0.993280745 0.924284711 0.876879463 0.896551334 0.952101397 0.916070509 0.948838223 0.94280526 0.90966651 0.905524381 0.939435304 0.992258997 0.989489435 209485869 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.061831031 1.044806539 1.025931912 1.023530807 0.965686403 1.035935334 1.00827743 1.006206677 1.023235417 1.029259977 0.957267829 1.012935823 0.942389461 0.985781287 1.001846515 0.951816355 1.023217398 1.038827413 373851601 RgaE Opitutaceae bacterium TAV5 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 1.262942396 1.244951285 1.23723947 1.246102367 1.233173625 1.263065337 1.222498353 1.225967497 1.2271449 1.239870088 1.250760304 1.242240417 1.199144621 1.214922434 1.205458402 1.217949554 1.244851508 1.244936281 385150499 amyA Bacillus sp. 5B6 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 0.945204352 0.920422105 0.949313992 0.909480785 0.880202013 0.919185197 0.851041325 0.902232217 0.909959305 0.919866279 0.864900169 0.921561425 0.855612541 0.898779712 0.877672006 0.945497259 0.934976021 0.949949782 39935130 nosz Rhodopseudomonas palustris CGA009 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 0.801473781 0.899579264 0.839685417 0.797658236 0.852542076 0.872813916 0.809984709 0.776482067 0.819397056 0.801959966 0.82447968 0.891533807 85831632 acetylglucosaminidase Leeuwenhoekiella blandensis MED217 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Leeuwenhoekiella;species:Leeuwenhoekiella blandensis; 0.820354074 0.836096993 0.893198929 0.864605531 0.863043782 0.840578768 0.847341283 0.773843437 0.819986867 0.816499523 0.870139858 0.86339914 0.829707599 0.874243246 0.858499276 0.819812781 255502889 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.022728538 1.0163712 0.957242769 0.986506325 0.957813303 1.009863153 0.96314244 1.000781297 1.005765866 0.987996643 0.970508854 0.987491812 0.906740151 0.966017769 0.900855829 0.919962788 1.014078923 1.01609853 327177902 fthfs uncultured bacterium Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria; 0.809253474 0.818362841 0.809309624 0.801144887 0.797003854 0.869407718 14289338 one_ring_12diox Rhodococcus sp. 19070 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 1.302388094 1.305269162 1.252052941 1.303701311 1.273664495 1.272732394 1.24411073 1.244166795 1.24444122 1.265714683 1.243270277 1.28661753 1.214833007 1.196502441 1.15892939 1.230193482 1.234407139 1.219957223 170740961 tktA Methylobacterium sp. 4-46 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 0.882088208 0.899847043 0.828135573 0.925184363 0.869914932 0.862518083 0.904532962 0.873978025 0.874219514 0.846446681 0.886479596 0.839446114 0.836218919 0.922423363 0.870713918 355540115 tfth Mesorhizobium amorphae CCNWGS0123 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium amorphae; 0.960094274 1.041733699 0.992077785 1.022654776 0.938656813 0.987146299 0.871397372 0.950649188 0.970235321 0.972291757 0.94531053 0.96709533 1.002864022 0.977488466 0.927033893 0.948797265 0.990759065 0.991547756 359309122 urec Gordonia effusa NBRC 100432 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia effusa; 0.836313064 0.88615983 0.919548755 0.874640777 0.888632515 0.88138931 0.962083453 0.855286745 0.81668935 0.812345212 0.883150081 0.840964988 0.864096416 0.788957054 0.808286579 0.890550431 0.828795066 189206824 cellobiase Pyrenophora tritici-repentis Pt-1C-BFP Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 0.857870998 0.826298052 0.797101076 0.849382856 0.830940576 0.84177319 0.865586163 0.81953318 0.835418693 0.81970108 0.818399725 121495584 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.812051644 0.821508592 0.96525332 1.126627712 0.842292832 0.793222807 119386860 soxY Paracoccus denitrificans PD1222 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 0.971231558 0.943135055 0.946192408 0.96504231 0.872124547 0.934702929 0.890614338 0.911282568 0.960194896 0.913574244 0.911132956 0.888393658 0.915563292 0.907916717 0.869842956 0.899581266 0.956360832 0.957628747 87302500 CsoS2 Synechococcus sp. WH 5701 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 0.981913146 1.058592162 1.010669409 1.038805092 1.024062952 1.074725318 0.968800377 0.964295333 0.954045392 1.007365059 0.949730403 0.924368278 0.991840571 0.979610157 0.954979101 0.97929795 1.047938923 1.049123204 392594387 badh Coniophora puteana RWD-64-598 SS2 Organic Remediation Aromatics Other aromatics superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Boletales;family:Coniophoraceae;genus:Coniophora;species:Coniophora puteana; 1.048563562 0.993387886 1.04698085 1.086508502 1.058827386 1.043940667 1.060611512 1.082369799 1.059515219 1.06107498 1.04373622 1.057615958 0.974668337 0.966441036 0.992264778 1.004046713 1.047754162 1.013931935 229816659 arsc Collinsella intestinalis DSM 13280 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Collinsella;species:Collinsella intestinalis; 0.866780066 0.895613916 0.883733149 0.862144803 0.861155699 0.859847033 0.871415797 0.847764577 0.876609432 0.92134542 340533555 amyA Corynebacterium variabile DSM 44702 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium variabile; 0.793831343 0.820537841 0.850173128 0.828591625 0.911909042 0.794282296 0.852938196 0.850809487 0.941944605 0.831477657 33284995 chna Acinetobacter sp. NCIMB9871 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 0.866691757 0.838774932 0.839972123 0.894614441 0.873329142 0.841279743 0.868682946 0.871823544 0.865715465 0.889529033 0.848876717 0.890795393 0.834974272 0.825221263 0.819217467 0.86832472 0.827708242 0.823193455 73763036 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.189551489 1.150130385 1.154735903 1.162507291 1.175687297 1.171044069 1.173909809 1.158894327 1.161785005 1.168881832 1.183124301 1.173386731 1.123234461 1.113576105 1.105211394 1.130537997 1.162181688 1.177490175 167361723 mer Rhizobium leguminosarum bv. trifolii WSM1325 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 0.798271934 0.906224535 0.870009842 0.797286869 0.814463492 0.832791849 183983455 linb Mycobacterium marinum M Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium marinum; 0.949077081 0.922766008 0.957715957 0.973724539 0.965348067 0.955756634 0.96907434 0.987150061 0.966062175 0.959084988 0.966747435 0.95549168 0.897765428 0.89354493 0.897695537 0.89507855 1.011439388 1.020026011 74038370 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.470969356 1.422805569 1.428729509 1.423583917 1.444170963 1.46729892 1.434101487 1.392532875 1.395682076 1.442803965 1.440011551 1.428650089 1.416599673 1.376187207 1.389761607 1.387487839 1.448787225 1.403869843 13591679 dsra Bilophila wadsworthia Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Bilophila; 1.088699346 1.066303936 1.054002211 1.106415138 1.007015227 1.143913959 1.017752604 1.059847327 1.092837457 1.05488429 1.026594986 1.054322327 1.038927444 1.060486227 1.110844598 1.048641643 1.108814895 1.120995994 225388479 CsoS1_CcmK Clostridium asparagiforme DSM 15981 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium asparagiforme; 1.026255505 1.05783416 1.013185293 1.040607062 1.041820438 1.028786193 0.946447393 1.026412339 1.096772822 1.003786275 1.010906125 1.024817989 0.985347396 1.01474536 0.939128812 0.984142406 1.022695746 1.070088658 293605176 catb Achromobacter piechaudii ATCC 43553 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter;species:Achromobacter piechaudii; 0.822308176 0.79286918 0.827165566 0.826291453 0.813497115 0.824063606 0.775775354 0.843241905 0.835073605 151302322 APS_AprB Desulfarculus baarsii Sulfur adenylylsulfate reductase NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfarculales;family:Desulfarculaceae;genus:Desulfarculus;species:Desulfarculus baarsii; 0.870836232 0.847854569 0.872488341 0.875886928 0.812701702 0.84315797 0.854884637 0.890627129 0.895852494 0.854126052 0.917173917 0.793353982 0.816006606 0.807549063 0.905399149 0.869529332 261371012 dsra Fibrobacter succinogenes subsp. succinogenes S85 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Fibrobacteres;class:Fibrobacteres;order:Fibrobacterales;family:Fibrobacteraceae;genus:Fibrobacter;species:Fibrobacter succinogenes; 1.186267802 1.128862771 1.148455838 1.184342189 1.110287761 1.111672496 1.09730758 1.139112362 1.148088385 1.133737904 1.137523034 1.16828088 1.099800504 1.079628165 1.112663595 1.121953334 1.148462729 1.103045756 171463835 FBPase Polynucleobacter necessarius subsp. necessarius STIR1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Polynucleobacter;species:Polynucleobacter necessarius; 1.09017393 1.04317562 1.049957627 1.116543832 1.082770204 1.161852077 1.073185084 1.094526349 1.103587918 1.10687503 1.071667858 1.11678508 1.063945686 1.052531304 1.068716822 1.050931472 1.098237044 1.072015727 114762419 GAPDH_Calvin Pelagibaca bermudensis HTCC2601 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pelagibaca;species:Pelagibaca bermudensis; 0.76469873 0.900514087 0.879895149 0.800361912 0.807398217 0.843632361 0.885769782 0.827773395 0.795372025 0.851800922 0.860998833 0.789569379 0.887254547 157369930 dmsa Serratia proteamaculans 568 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia proteamaculans; 0.892492767 0.855630347 0.846138672 0.869543205 0.869145888 0.875124305 0.874126937 0.868489295 0.871054117 0.864916948 0.909740742 0.843144663 0.870215035 0.877056304 0.889256176 0.870084264 0.889122643 0.932378453 407299551 arylest Nitratireductor pacificus pht-3B Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Nitratireductor;species:Nitratireductor pacificus; 0.878119708 0.867159646 0.877562454 0.876435855 0.810059131 0.846388349 0.894886468 0.856713933 0.859039705 0.870124415 0.851105442 0.88720624 0.846675242 0.849134788 0.902242093 0.871723786 296931113 acetylglucosaminidase Arcanobacterium haemolyticum DSM 20595 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Arcanobacterium;species:Arcanobacterium haemolyticum; 0.964947231 0.826231589 0.817244297 0.83462628 0.811084711 0.845220785 0.87246071 0.812451754 0.822488178 0.845701664 0.820838964 0.864007863 348593390 fthfs Oscillibacter valericigenes Sjm18-20 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Oscillospiraceae;genus:Oscillibacter;species:Oscillibacter valericigenes; 0.870952935 0.875475972 0.794546122 0.873296037 0.786235357 0.845018725 0.881803841 0.868458342 0.809207103 0.844673073 0.837643038 0.853121208 328542610 tktA Polymorphum gilvum SL003B-26A1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;species:Polymorphum gilvum; 1.115450686 1.136629932 1.106066597 1.097670127 1.073209067 1.115116007 1.038329063 1.071580344 1.074349238 1.096815033 1.071328384 1.078286698 1.05032925 1.099593723 1.030224994 1.069406002 1.100048862 1.125582185 145216622 cutinase Mycobacterium gilvum PYR-GCK Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 1.224640822 1.187909728 1.174250539 1.201425845 1.148087377 1.196773071 1.162735072 1.184900641 1.190116972 1.159596594 1.151128344 1.172965669 1.14005041 1.148344559 1.149429134 1.175534646 1.197629749 1.157532873 336436944 xylanase Lachnospiraceae bacterium 1_4_56FAA Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae; 0.843309019 0.856374173 0.873586661 0.890241 0.889411592 0.916651408 0.924023501 0.793832978 0.880634381 0.923925011 0.941101017 0.945937192 0.856673941 0.853325649 0.850404222 0.861887689 0.86081545 219949377 terc Methylobacterium nodulans ORS 2060 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 1.197720318 1.195504122 1.187909862 1.165349009 1.155825229 1.199356128 1.165870437 1.166796673 1.165154813 1.175239107 1.155390725 1.187128833 1.150061394 1.168416962 1.103064318 1.157660538 1.180923121 1.189753302 342316512 aoxb uncultured bacterium Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 0.851673065 0.871523116 0.860887402 0.805043409 0.843359591 0.922465284 0.84150726 0.7962285 0.952963977 0.918853524 0.873865341 0.86470517 0.972568087 0.872614758 0.881563798 0.872164527 0.915013089 326413812 tktA Polymorphum gilvum SL003B-26A1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;species:Polymorphum gilvum; 0.961829398 0.951413573 0.96716433 0.973577601 0.889742591 0.959620783 0.894667663 0.937668045 0.981347338 0.94893969 0.892517921 0.912494445 0.915275759 0.912035355 0.818284848 0.898458976 0.969012936 0.955817016 157368303 amyA Serratia proteamaculans 568 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia proteamaculans; 0.976417183 1.019190704 0.981679639 0.951931615 0.972741283 1.010861708 0.931980916 0.912469197 0.95902331 0.983832866 0.938769077 0.978683864 0.93099301 0.911269225 0.874333218 0.941514515 0.954474396 0.978194041 134099390 dehh Saccharopolyspora erythraea NRRL 2338 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 1.041730495 0.999662396 0.995623769 1.025606811 0.967689395 1.044477567 0.928766003 0.989165234 1.021781736 0.990788737 1.01507231 1.006796967 0.983785496 0.988712383 0.946912422 0.979291639 1.059962682 0.99259694 320537702 acetylglucosaminidase Treponema phagedenis F0421 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema phagedenis; 1.240282365 1.255179842 1.240233512 1.221191469 1.196939338 1.259106407 1.196338346 1.203112499 1.205382975 1.203022842 1.215153047 1.213927801 1.201821487 1.187004491 1.182528873 1.20306287 1.257408692 1.233004466 114307370 GAPDH_Calvin Nitrosomonas eutropha C91 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas;species:Nitrosomonas eutropha; 1.164194777 1.180482706 1.167398695 1.144309495 1.147321713 1.194882633 1.133977782 1.133555633 1.141968937 1.145882169 1.132029269 1.156457859 1.133006018 1.122198212 1.162054891 1.156052522 1.171909889 1.143977943 224520164 RgaE Bacteroides cellulosilyticus DSM 14838 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides cellulosilyticus; 0.824638128 0.868422688 0.843076112 0.920862711 0.874299586 0.850501328 0.859037841 0.856966905 0.867969309 0.860167148 0.905542025 0.838509021 0.881489916 0.851181492 0.860256768 0.861899967 258543743 amyA Cardiobacterium hominis ATCC 15826 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Cardiobacteriales;family:Cardiobacteriaceae;genus:Cardiobacterium;species:Cardiobacterium hominis; 1.06252564 0.99576093 1.015532815 1.041626427 1.029216151 1.054356439 1.032499911 1.001589247 1.02667068 1.026562352 1.02429841 1.017211372 1.017532368 0.992441562 0.927880668 0.979237181 1.077029191 1.00353962 359791468 rgh Mesorhizobium alhagi CCNWXJ12-2 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium alhagi; 0.862311555 0.839147264 0.849007208 0.828303053 0.853589506 0.854478503 0.8464984 0.829230234 0.807374554 0.837906942 0.80039641 0.867430796 93357595 nasa Cupriavidus metallidurans CH34 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 0.780890287 0.874014193 0.853499401 0.813464028 0.834420282 0.843002601 297567660 Sir Meiothermus silvanus DSM 9946 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Meiothermus;species:Meiothermus silvanus; 0.916038156 0.886432661 0.871660471 0.959339775 0.907497123 0.940686683 0.877608114 0.931327822 0.909554194 0.935594005 0.885411694 0.925252665 0.848644065 0.897323114 0.877445107 0.885163398 0.962005966 0.885731472 119371706 narg Comamonas nitrativorans Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas; 1.024785686 1.016977044 1.029197069 1.029553936 1.018343685 1.079169044 1.0073744 1.002530336 1.013130803 0.979374703 0.977214352 0.972498242 1.013350189 0.948516903 0.990901483 0.991656982 1.057334322 1.027945624 328522492 RgaE Bacteroides clarus YIT 12056 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides clarus; 0.85976933 0.825978305 154244829 chitinase Xanthobacter autotrophicus Py2 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 0.911742539 0.860240892 0.896059935 0.907083422 0.845005677 0.886989869 0.866389777 0.884170254 0.927708997 0.875041091 0.88652543 0.906669179 0.860970582 0.874597846 0.89869234 0.888478396 0.906092105 0.885760684 256357030 alginase Catenulispora acidiphila DSM 44928 Carbon Cycling Carbon degradation Alginate superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 0.924069065 0.952452183 0.88447291 0.949601579 0.909192497 0.938844089 0.879444541 0.919683277 0.904932973 0.892551769 0.880485485 0.921836347 0.866565494 0.882593714 0.892481913 0.878389607 0.960008079 0.921739803 268317541 vgb Rhodothermus marinus DSM 4252 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Bacteroidetes;order:Bacteroidetes Order II. Incertae sedis;family:Rhodothermaceae;genus:Rhodothermus;species:Rhodothermus marinus; 0.803884063 0.797247076 0.836357174 0.81328358 0.839612258 0.830571075 0.827282517 0.815766427 0.822013717 0.859254975 0.858615839 0.784489404 0.829437715 0.78418754 0.796554438 0.813617794 337762597 chitinase Streptomyces cattleya NRRL 8057 = DSM 46488 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces cattleya; 1.42226007 1.381768977 1.383040526 1.414592522 1.366033361 1.351239969 1.340640088 1.390107224 1.398965788 1.358114886 1.348241426 1.389128373 1.341714659 1.316169942 1.340143721 1.312236336 1.386060067 1.354382002 384103436 amyA Rhodococcus imtechensis RKJ300 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus imtechensis; 1.175491518 1.177540169 1.146759573 1.162489665 1.154608512 1.172561233 1.142670664 1.163667195 1.136665155 1.137902795 1.12558088 1.164847603 1.151919595 1.102357438 1.125860442 1.165741076 1.189463117 1.165636308 293606994 ppx Achromobacter piechaudii ATCC 43553 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter;species:Achromobacter piechaudii; 1.00809096 0.999208695 0.985480685 1.019402734 0.901887653 0.954722299 0.924037123 1.032608865 1.009925408 0.96826489 0.935716051 0.964653317 0.912708886 0.943974507 0.858156347 0.912696569 0.979865526 0.974807597 151362421 cellobiase Kineococcus radiotolerans SRS30216 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Kineosporiaceae;genus:Kineococcus;species:Kineococcus radiotolerans; 1.031729906 1.005448882 1.023963958 1.033831682 0.997487112 1.023895588 0.972840868 0.995558124 0.985855242 0.996968676 0.981736193 1.001592858 1.017338735 0.984312207 0.935975906 0.990858632 1.045419331 0.972601636 364003714 hyaluronidase Streptomyces sp. W007 Carbon Cycling Carbon degradation hyaluronic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 0.856870696 0.952969069 0.899892988 0.927504313 0.90951319 0.879676068 0.858437439 0.860389572 0.834635401 0.811531089 0.851354882 0.875802308 0.873924767 0.90978792 116750059 ben_bcla Syntrophobacter fumaroxidans MPOB virulence NA NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophobacteraceae;genus:Syntrophobacter;species:Syntrophobacter fumaroxidans; 1.001100801 0.974825756 0.937080495 1.008362774 0.910062368 0.972571373 0.906458286 0.947137612 1.003402153 0.982418716 0.889839614 0.974519538 0.986065693 0.89689211 0.882896303 0.930999995 0.985478085 0.986059775 302568134 amyA Micromonospora aurantiaca ATCC 27029 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Micromonospora;species:Micromonospora aurantiaca; 1.230650955 1.203029221 1.193981123 1.215735708 1.20060779 1.233020449 1.16589257 1.163723206 1.184742411 1.175512301 1.161604247 1.160685027 1.16910786 1.152333483 1.127305379 1.144937102 1.222055456 1.188508815 295438164 vana Burkholderia sp. CCGE1002 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 0.805633197 0.816237408 0.819582475 0.838657374 0.856592358 0.830136984 0.823607121 148342406 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.831233218 0.842148123 0.840926978 0.826976756 0.831522063 0.817745071 302899692 endochitinase Nectria haematococca mpVI 77-13-4 Carbon Cycling Carbon degradation Chitin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Nectria;species:Nectria haematococca; 1.377239565 1.339921965 1.366770193 1.372822574 1.373752275 1.342851985 1.31909785 1.379656363 1.356209912 1.368690781 1.340326361 1.420485293 1.318965944 1.307277219 1.316220716 1.321785265 1.367189619 1.324054274 81300774 ppx Synechococcus elongatus PCC 7942 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus;species:Synechococcus elongatus; 0.979301468 1.030533498 0.938030305 0.978946595 0.981233211 1.010607267 0.951932012 0.953846745 0.976410252 0.969872988 0.895513829 0.988399309 0.946911075 0.943491891 1.319199235 0.956556873 1.001872542 1.023281535 145558155 SoxC Rhodobacter sphaeroides ATCC 17025 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 0.977164585 0.987308575 0.947955332 0.998747283 0.94614167 0.954378819 0.963002198 0.941909586 0.936052946 0.949470697 0.959087241 0.940326737 0.941588945 0.890780503 0.92742251 0.938346119 0.946273664 0.920864674 115523882 B_lactamase_A Rhodopseudomonas palustris BisA53 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 0.78686624 0.823189986 0.805521377 0.825373302 0.884552357 0.899652687 0.867545724 0.868668721 0.886865018 0.814596562 0.900752638 0.884698888 0.835456136 0.85063456 0.814846702 0.834119129 0.814036676 387163414 nagg Pseudomonas fluorescens A506 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 0.857052691 0.857526184 0.814747892 0.851382882 0.81871744 0.841996623 0.802797159 0.826591641 0.855138976 0.891535165 0.882902296 359767741 ppk Gordonia polyisoprenivorans NBRC 16320 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia polyisoprenivorans; 1.063320094 1.073588947 1.052111953 1.097548655 1.141833482 1.093264308 1.134420344 1.0421011 1.082734992 1.123659971 1.112771833 1.177858052 1.158377417 1.11981289 1.218993156 1.16576408 1.068236671 1.062799167 29827104 mhpa Streptomyces avermitilis MA-4680 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 0.901641067 0.945508872 0.981147614 0.870680029 0.880454575 0.895549855 0.840216253 0.814441316 0.835696329 0.814799718 0.803631785 0.812078512 0.894504631 0.954755915 389879536 bphd Tistrella mobilis KA081020-065 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Tistrella;species:Tistrella mobilis; 0.769412408 0.84348304 0.815173902 0.836855154 0.808042271 0.835443834 0.835826124 117928077 terc Acidothermus cellulolyticus 11B Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Acidothermaceae;genus:Acidothermus;species:Acidothermus cellulolyticus; 1.12226847 1.114314107 1.134904404 1.06356075 1.047683864 1.097854794 1.019204378 1.067574 1.069013379 1.081282152 1.017125904 1.064264127 1.02647547 1.079460544 1.05599554 1.070164967 1.140728973 1.089896013 6002404 mmox Methylomonas sp. KSWIII Carbon Cycling Methane Methane oxidation superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylomonas; 1.050628672 1.021436577 1.038973684 0.956636711 1.034266201 1.104518571 0.949691273 1.010239258 1.003929487 1.070934283 1.064769067 1.095540443 0.961184336 1.063772735 1.011646792 1.00047177 0.983713857 1.07076913 113526155 trzn Ralstonia eutropha H16 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 1.196513837 1.189119557 1.162272923 1.164574862 1.170843592 1.20904566 1.168187843 1.14516668 1.162421421 1.150168891 1.181739408 1.166651237 1.161857735 1.123369435 1.142429892 1.18044181 1.17643847 1.164084331 291004391 ppx Saccharopolyspora erythraea NRRL 2338 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 0.918486272 0.960060181 0.956722258 0.906038182 0.89594187 0.944885251 0.908173048 0.881718386 0.909745463 0.987548849 0.928075083 0.931595396 0.899959707 0.957705376 0.915826176 0.916239717 0.922414662 0.978520878 111150334 chnb Frankia alni ACN14a Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia;species:Frankia alni; 1.388591707 1.366680379 1.348337137 1.392315002 1.376888048 1.387756181 1.375326478 1.399229792 1.366444965 1.346626274 1.358066433 1.380697738 1.344769754 1.327449586 1.385089158 1.378569422 1.370699295 1.321285519 121589358 fccab Halorhodospira halophila SL1 Sulfur Sulfide Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Halorhodospira;species:Halorhodospira halophila; 0.855174271 0.813054379 0.815485372 0.809528833 0.855024276 0.825266699 0.810156114 0.82127841 0.849834302 0.81918482 0.829733934 0.85378778 0.808603506 0.810331957 261203269 phospholipase_C_fungi Ajellomyces dermatitidis SLH14081 Carbon Cycling Carbon degradation Phospholipids superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces dermatitidis; 0.867136189 0.804392757 0.943053575 0.829316533 0.842275824 0.841532635 0.824816586 0.941567886 0.840047479 0.818113406 0.844410853 0.845750244 0.903090614 0.890082749 2331052 ccmM Synechococcus sp. PCC 7002 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 0.993980888 0.894421688 0.933835677 0.913433796 0.866685538 0.887882197 0.884913893 0.930796618 0.925109567 0.926080915 0.887862209 0.917542081 0.815223311 0.873267754 0.861203208 0.845714527 1.048150592 0.94773072 94312103 nirs Cupriavidus metallidurans CH34 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 0.812547576 0.796238527 0.809462458 0.802193454 0.902776863 0.841930328 0.840469923 0.825576176 0.861380032 0.911599662 0.825946406 0.911854543 0.922551218 83595955 phn uncultured marine bacterium Ant24C4 Organic Remediation Herbicides related compound NA superkingdom:Bacteria; 0.979184684 0.994069419 0.926450114 0.998003823 0.935974385 0.962650482 0.936794524 0.918197445 0.972855686 0.970851615 0.954100511 0.971567185 0.926378101 0.930649401 0.934454899 0.948633834 0.952997237 0.995417065 365184122 oxdb Sinorhizobium fredii HH103 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium fredii; 0.919457265 0.989761719 0.904541044 0.879295542 0.909547006 0.856536542 0.889452958 0.871832481 0.896676078 0.908819309 0.904992406 0.953394447 0.892370599 0.854675452 0.892413401 0.907298293 0.875839036 0.876734616 255079800 atzd Micromonas sp. RCC299 Organic Remediation Herbicides related compound NA superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Mamiellophyceae;order:Mamiellales;genus:Micromonas; 1.012413 0.986424671 0.948526867 1.001857442 0.937061189 0.977412782 0.907115916 0.939201966 1.01186911 0.980872296 0.96110237 0.948285334 0.951396607 0.977891196 0.927200561 0.979208625 1.020904779 0.989476015 206687650 TIM Rhodobacterales bacterium Y4I Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 1.143690536 1.126207357 1.163651933 1.14160206 1.086648649 1.139076736 1.125495281 1.125985503 1.105760782 1.140242523 1.093069191 1.125483974 1.109712553 1.084102701 1.098179766 1.111683968 1.141539429 1.14708641 354722619 pme Enterobacter mori LMG 25706 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter mori; 1.021522687 1.136033054 1.058996637 1.042136406 1.030052986 1.026099637 1.040125137 1.06469599 0.999767589 1.021098961 1.006468437 0.984245175 0.981484811 0.952067911 0.959804456 0.974056585 1.029615093 1.030686675 17933474 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.949000731 0.850944816 0.850211569 0.80246355 0.79661268 0.874133547 0.875795736 0.845160654 0.884639388 0.866907391 0.837982343 0.83461382 0.852678157 0.871736363 0.915033798 118046180 catechol_b Chloroflexus aggregans DSM 9485 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aggregans; 1.024691406 0.989861153 1.013549043 1.022773119 1.010590405 1.027309132 0.990026094 0.999769865 1.020269529 1.012202021 1.003962353 1.005718583 0.95548287 0.981573526 0.919915804 0.969067503 1.020368847 0.982906782 151582326 cellobiase Opitutaceae bacterium TAV2 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 1.121722823 1.094856277 1.104278891 1.112524048 1.106036339 1.128569106 1.114638178 1.155333009 1.08366729 1.096167972 1.112539301 1.090695059 1.067250935 1.03839245 1.041746087 1.040850203 1.090819372 1.084636132 355360575 terc Desulfotomaculum gibsoniae DSM 7213 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum gibsoniae; 0.948386008 0.903927953 0.967691704 0.936554293 0.924228735 0.944376052 0.934272786 0.965020317 0.988012462 0.883588999 0.923714514 0.938928708 0.871553608 0.943667284 0.877666328 0.899726882 0.945568427 0.937796775 302413759 pec_Cdeg Verticillium albo-atrum VaMs.102 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticillium;species:Verticillium alfalfae; 0.90784366 0.888357854 0.860023559 0.892117866 0.892437782 1.015692097 0.835987058 0.849300981 0.9425574 0.961555051 0.915628275 0.969205478 1.103903205 0.904947797 0.830561189 0.866740685 0.885221375 297570977 amyA Arcanobacterium haemolyticum DSM 20595 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Arcanobacterium;species:Arcanobacterium haemolyticum; 1.422796606 1.443865682 1.396396629 1.404321618 1.382896234 1.452418851 1.381268818 1.374124168 1.392861043 1.403496322 1.383508549 1.375620538 1.372978172 1.379782185 1.354190595 1.39321913 1.413391428 1.420102437 308273446 atza uncultured Desulfobacterium sp. Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfobacterium; 0.798280688 0.869620009 0.822520958 0.846375931 0.906556517 0.838929867 0.839659332 0.878083351 0.880543974 0.85123188 0.831666029 0.865067303 0.833271613 0.916289585 0.825419429 0.836366429 0.837391872 0.9312519 226346940 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.766950543 0.845364064 0.842544332 0.80846383 0.809042396 0.810985203 0.794693944 0.843179699 371999992 atzd Rhodococcus sp. Mel Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 0.829833985 0.842849036 0.860611842 0.818873891 0.794340019 0.850050877 0.829438362 0.805361258 0.849221085 0.8739398 390426432 b_lactamase Thiocystis violascens DSM 198 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiocystis;species:Thiocystis violascens; 1.140390953 1.116045098 1.135358296 1.126128364 1.10476851 1.135507598 1.113279604 1.126269198 1.119341588 1.113280752 1.103447045 1.104064984 1.099124886 1.061676148 1.061103549 1.071328816 1.147115454 1.090339033 70985925 nagg Aspergillus fumigatus Af293 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Aspergillus fumigatus; 0.990360004 1.001338799 1.003947592 0.984283344 1.007614131 0.989938526 1.019370058 1.008453842 1.030342138 0.988340904 1.005077175 0.988869031 0.950868318 0.933423214 0.918179714 0.904021817 1.009716831 0.980467717 55231424 alkk Haloarcula marismortui ATCC 43049 Organic Remediation Others NA superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloarcula;species:Haloarcula marismortui; 0.960463208 0.962814073 1.029122506 1.024539291 0.964696614 0.929405675 0.988071453 0.994125886 1.01127198 0.976521204 0.978202144 1.015032815 0.913996445 0.934429672 0.892194457 1.04152779 0.947190794 0.926653912 325677268 xylj Rhodococcus equi ATCC 33707 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus equi; 1.07852518 0.972887138 1.028332158 1.085203123 1.015427019 1.029326614 1.027331611 1.044112488 1.066996117 1.045091653 1.028741297 1.059932874 1.00265085 1.040253706 1.009723979 1.021818467 1.112049197 1.037533382 342316498 aoxb uncultured bacterium Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 0.803323937 0.803705655 0.823783583 0.799578813 0.826969745 0.78505113 296027248 amyA Tsukamurella paurometabola DSM 20162 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Tsukamurellaceae;genus:Tsukamurella;species:Tsukamurella paurometabola; 1.117005591 1.104167176 1.100843501 1.15642895 1.095403066 1.081806583 1.077626936 1.073861974 1.110472586 1.096266633 1.075674586 1.113002586 1.070574767 1.055276022 1.043940927 1.081411347 1.098629964 1.108809478 46392640 pmoa uncultured bacterium Carbon Cycling Methane Methane oxidation superkingdom:Bacteria; 0.786777976 0.800686016 0.822079424 0.805163233 358398397 ara Trichoderma atroviride IMI 206040 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Hypocreaceae;genus:Trichoderma;species:Trichoderma atroviride; 1.00014143 0.954437954 0.951153308 1.002098811 0.928590257 0.941098005 0.916094088 0.921413883 0.973884806 0.933728551 0.925439531 0.960635448 0.943989374 0.907631873 0.886343015 0.941314802 0.985521812 0.953036681 306488099 nirs uncultured organism Nitrogen Denitrification NA 0.959175209 0.937098966 0.904058463 0.93481004 0.913116966 0.993269829 0.954998944 0.937760362 0.911978185 0.935083698 0.956662683 0.915563445 0.876439589 0.916528975 0.812518337 0.870797535 0.999089422 0.978584165 28920527 axe Neurospora crassa OR74A Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Neurospora;species:Neurospora crassa; 1.09826622 1.114429454 1.099592069 1.141533956 1.092219054 1.076091071 1.075087801 1.136631519 1.131081558 1.066781387 1.070060873 1.113706922 1.062675391 1.052845385 1.083619591 1.055840483 1.12111999 1.098803107 288942449 CsoS2 Allochromatium vinosum DSM 180 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Allochromatium;species:Allochromatium vinosum; 0.873385528 0.884219665 0.893012484 0.896129904 0.886760428 0.862949612 0.900826725 0.916414384 0.856506491 0.867679254 0.858431696 0.867181006 0.841625001 0.783429741 0.881065066 0.91422032 206559705 mhpa Burkholderia cenocepacia J2315 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cenocepacia; 1.081479465 1.073537365 1.042645702 1.09448749 1.091768706 1.099958185 1.044044012 1.049572532 1.048909233 1.058743177 1.06589634 1.083775335 1.036550378 1.032160841 1.00255323 1.024840801 1.082582513 1.070904287 27355843 dehh109 Bradyrhizobium japonicum USDA 110 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 0.80431375 0.792871335 0.795637609 0.858266542 0.799211137 0.834792883 0.793585997 0.836188663 0.831806945 0.806867175 0.859389023 0.781933295 0.788156859 0.836006467 0.863991954 302524462 xylg Streptomyces sp. AA4 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 1.556705245 1.49532291 1.496180565 1.476641518 1.518955133 1.572445008 1.49497056 1.437199713 1.44938695 1.519554585 1.48326827 1.470593783 1.469840759 1.489773856 1.497186547 1.464377888 1.504300651 1.475027966 111022766 bphc Rhodococcus sp. RHA1 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 1.040012947 1.044469357 1.036069206 1.039362237 0.987525774 1.052751405 1.003675425 0.984384771 0.994301235 1.038178754 0.991809892 1.007437386 0.988814908 1.017183098 0.942578765 0.99924121 1.021343569 1.03574728 51872775 chitinase uncultured organism Carbon Cycling Carbon degradation Chitin 0.822394688 0.877961065 0.84877426 0.840800345 0.831511089 0.852056431 0.811910837 0.832306933 0.810186038 0.848706016 0.832081537 0.814260524 0.820121746 0.830325089 328951524 merb Marinithermus hydrothermalis DSM 14884 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Marinithermus;species:Marinithermus hydrothermalis; 1.070119661 1.021586554 1.007762661 1.08030537 1.042607874 1.054126334 1.05194473 1.056862192 1.047631565 1.022700342 1.012995637 1.042942549 1.039981008 0.996252807 1.013647865 1.059805865 1.071765735 1.015229553 337762394 badh Streptomyces cattleya NRRL 8057 = DSM 46488 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces cattleya; 0.986767139 0.97133261 0.98980944 1.012289244 0.926786308 0.969773421 0.957771131 0.977534264 0.999291015 0.991903477 0.928717133 1.013701035 0.914115587 0.934956725 0.938568859 0.957393827 0.994155566 0.998805536 118473530 cutinase Mycobacterium smegmatis str. MC2 155 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 1.15439021 1.122751218 1.128338517 1.158897401 1.131131537 1.156656344 1.140929577 1.143603162 1.126725821 1.116505153 1.126243243 1.116623207 1.123041319 1.090202476 1.118688659 1.086803988 1.171113897 1.09777399 269144316 terc Neisseria cinerea ATCC 14685 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria cinerea; 0.848541239 0.823491058 0.847291057 0.869005263 0.848977303 0.866986017 0.863910599 0.906398251 0.843219065 0.87886215 0.798875186 0.838130544 0.817687777 0.895646806 0.821275732 0.845245028 0.87539931 374922717 arra uncultured bacterium Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 0.812793917 0.89701496 0.764924703 0.8352541 0.899429524 0.868501478 0.829923553 0.926004916 260578061 amyA Corynebacterium jeikeium ATCC 43734 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium jeikeium; 1.35668806 1.325802898 1.347643172 1.327469359 1.336910686 1.361662445 1.3276563 1.361245507 1.345617686 1.340867739 1.363639185 1.351105467 1.31980281 1.331603785 1.327686671 1.322736319 1.310310476 1.328727024 90418486 rubisco Aurantimonas manganoxydans SI85-9A1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Aurantimonas;species:Aurantimonas manganoxydans; 1.012827104 0.966738612 1.009953372 1.027593829 1.026223952 1.039253562 1.045415768 1.033320429 0.959930062 0.943862296 0.971365809 1.013298207 0.945851207 0.949063757 0.921990409 0.935766912 1.030685955 1.048160998 77961546 acetylglucosaminidase Yersinia mollaretii ATCC 43969 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia mollaretii; 0.830648231 0.843297877 0.806287373 0.843591717 0.825477299 0.827249906 0.85952939 336399379 acetylglucosaminidase Prevotella multisaccharivorax DSM 17128 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella multisaccharivorax; 0.990984217 0.941374669 0.938947888 1.07525361 0.956581971 0.999158786 0.997876197 0.991912923 1.010253512 0.996613625 0.975770339 1.024349622 0.993901217 0.91658929 0.889077795 1.009934126 0.97741467 219946052 dehh109 Methylobacterium nodulans ORS 2060 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 1.414092601 1.384300786 1.369290296 1.394022698 1.377258433 1.396753853 1.371912647 1.382673663 1.373443114 1.352754922 1.361607513 1.374698589 1.374690444 1.317351492 1.367421612 1.36133772 1.398187332 1.33314465 344260873 soxY Methylobacter tundripaludum SV96 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylobacter;species:Methylobacter tundripaludum; 1.063919252 1.099052968 1.076572339 1.037611994 1.077470263 1.101922421 1.068153497 1.069758962 1.071877812 1.070600129 1.079240634 1.053797007 1.04136378 1.018236788 1.024244801 1.013733954 1.090889835 1.046393513 6910981 mnp Dichomitus squalens Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Polyporaceae;genus:Dichomitus; 0.792128245 0.837098308 0.817072341 0.829742792 0.778665321 0.806539739 224566899 alginase Streptomyces sp. M3(2009) Carbon Cycling Carbon degradation Alginate superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 1.03839468 1.038781002 0.968852933 1.036746611 1.013536704 1.02186526 0.974127464 1.024468127 1.024280937 1.026318268 0.97685853 1.05222645 0.984093883 0.975897266 0.985517863 1.011908267 1.034902665 1.04108495 5263173 Bacteriorhodopsin Haloarcula japonica Secondary metabolism Pigments Rhodopsin superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloarcula; 0.830528678 0.861910919 0.915076486 0.905120315 0.814636334 0.859753649 0.813838882 0.884227706 0.811563124 0.824365968 0.804449714 0.875193387 0.959554393 0.885182872 2266938 ligninase Trametes versicolor Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Trametes; 0.769584173 0.801943925 0.885812116 0.78287153 0.798712628 0.826032116 0.838043559 0.867775447 0.778009067 0.820038351 0.89630201 0.892310748 229489260 cmci Rhodococcus erythropolis SK121 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 0.804740977 0.787015975 0.815939864 0.816590283 0.772638115 0.821982106 379990365 dsrB uncultured bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.799097909 0.815158168 0.889148291 0.813084577 0.798744223 376372744 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.236003345 1.135462604 1.09338287 1.14431477 1.135984352 1.077787789 1.12712913 1.122424464 1.166116289 1.070190975 1.06729091 1.129544452 1.106583668 1.006764944 0.986077987 1.090667213 1.085593766 1.111091939 94971105 amyA Candidatus Koribacter versatilis Ellin345 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Acidobacteria;genus:Candidatus Koribacter;species:Candidatus Koribacter versatilis; 0.961350686 0.899253506 0.948802244 0.914729062 0.894786864 0.879019665 0.848249777 0.935946046 0.867219479 0.90727247 0.845145604 0.843301704 0.868907067 0.83524333 0.846690923 0.938635559 0.906334888 375093951 xylj Saccharomonospora marina XMU15 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora marina; 1.494866639 1.480407639 1.460587132 1.455731919 1.447627155 1.503179925 1.437032655 1.455577815 1.455412475 1.460318085 1.455321067 1.459887535 1.433945615 1.414092675 1.403121066 1.440805802 1.497981395 1.460368234 333603425 fosb Paenibacillus sp. HGF7 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 1.122001331 1.077141519 1.101699112 1.090356968 1.031645809 1.076168594 1.00964384 1.045897929 1.101839846 1.076509888 1.062914509 1.063433768 1.06423384 1.043158375 0.999671582 1.041362781 1.091780537 1.069639533 333808837 nitrilase Methylomonas methanica MC09 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylomonas;species:Methylomonas methanica; 0.96407946 0.879726407 0.833625753 0.882098658 0.842448946 0.866035308 0.834153955 0.809193967 0.857293294 0.837275572 0.828405109 0.801599437 163746714 soxY Oceanibulbus indolifex HEL-45 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanibulbus;species:Oceanibulbus indolifex; 0.933599404 0.938073938 0.924361415 0.932720333 0.920657492 0.934058703 0.859935562 0.882738282 0.86846151 0.896169659 0.881126063 0.939321586 0.881042982 0.855288394 0.86106794 0.904676129 0.952394891 0.900467767 327545300 PRI Oxalobacteraceae bacterium IMCC9480 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae; 1.029654772 1.069315248 1.022745187 1.112956727 1.059171959 1.041711786 1.087816793 1.022884261 1.049331287 1.055747057 1.010735486 1.05333109 1.025179341 1.006325459 0.97967535 0.990412289 1.040952058 1.050195812 119671014 amyA Azoarcus sp. BH72 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 0.97657682 0.969265242 1.018331239 1.009085783 0.979536796 1.027967577 0.975032488 0.991256618 1.00087825 0.988016588 0.936153424 1.009809639 0.927693035 0.925082431 0.956094932 0.971152645 1.013459441 0.965230917 193226136 badi Cupriavidus taiwanensis LMG 19424 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus taiwanensis; 1.316703941 1.279227052 1.272096941 1.31975676 1.282166636 1.29071522 1.270640652 1.290275658 1.285704316 1.284046605 1.28871951 1.297946426 1.256797787 1.235674516 1.254147147 1.233448304 1.324176491 1.274057136 151302325 APS_AprB Desulfobacca acetoxidans DSM 11109 Sulfur adenylylsulfate reductase NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophaceae;genus:Desulfobacca;species:Desulfobacca acetoxidans; 0.856519975 0.800071176 4468699 terc Streptomyces coelicolor A3(2) Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 1.028915662 0.979224226 0.995185689 1.038104093 0.958407056 0.980234719 0.967091553 1.016698253 1.033128405 0.957324716 0.940466981 0.994523088 0.957363576 0.951568551 0.933276776 0.959688365 1.037322597 0.929969865 414593072 nfsb_2 Escherichia blattae NBRC 105725 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Shimwellia;species:Shimwellia blattae; 0.807881306 0.795953249 0.824574635 0.837494919 0.813899767 0.825025715 0.80348165 0.918733288 0.86291263 85113565 axe Neurospora crassa OR74A Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Neurospora;species:Neurospora crassa; 0.934497043 0.946003616 0.883018062 0.869945196 0.825900367 0.889612998 0.834646502 0.922437422 0.869757914 0.925213754 0.858657477 0.88143047 0.792408459 0.842732639 0.81595295 0.903115457 0.908111149 87281008 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.826594603 0.802167429 0.800668096 0.779402591 0.805421566 0.809118401 0.808823329 0.777405286 0.794837896 0.82101792 74038382 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.930942595 0.94798791 0.904298073 0.909116333 0.918155829 0.968343289 0.915700673 0.934369848 0.902016242 0.950545682 0.929966313 0.923599934 0.92584742 0.948587306 0.866954073 0.91330813 0.91313064 0.948234023 88917246 nifh Geobacter uraniumreducens Rf4 Nitrogen Nitrogen fixation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter uraniireducens; 0.94177363 0.973313433 0.976429759 0.981333918 0.993622202 0.997055146 0.982644549 0.994237097 0.978096081 0.984027033 0.971517737 0.960279981 0.929828295 0.911819959 0.886932561 0.91461667 0.991693163 0.954827925 359305462 arsc Arthrobacter globiformis NBRC 12137 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter globiformis; 0.874698848 0.861559217 0.845425189 0.883947674 0.934410737 0.901161467 0.909936467 0.913033047 0.892621859 0.852551068 0.857476489 0.913575566 0.912747787 0.820855107 0.820867644 0.890344621 310620604 atza Megasphaera micronuciformis F0359 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Megasphaera;species:Megasphaera micronuciformis; 0.993248233 0.952696948 0.997646178 1.015459591 1.006982008 1.020374591 1.046978156 1.030006655 1.008066906 0.98446616 0.997195954 0.979132341 0.95286042 0.926262004 0.915879755 0.915141858 1.021263306 0.994847841 194561935 xylg Burkholderia dolosa AUO158 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia dolosa; 1.060114681 1.017634033 1.079943801 1.055315731 0.980130638 1.016719818 0.989120955 1.028973974 1.065949555 1.049783143 1.034412223 1.089090297 0.981474577 0.994398835 0.993884924 1.002810367 1.057450566 1.038777266 334859460 amyA Frankia symbiont of Datisca glomerata Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 1.029659628 1.069047651 1.009154943 1.048318249 1.004868466 1.078872193 0.992959829 1.031380638 1.002259916 1.035171891 1.028401695 1.030607535 1.004081921 1.051040624 1.034843499 1.02871658 1.032765126 1.046456286 310867702 RgaE Bacillus atrophaeus 1942 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus atrophaeus; 1.103057263 1.090356589 1.035323241 1.050504638 1.036037117 1.096223716 1.054790208 1.061729804 1.037464798 1.073083137 1.063962512 1.050734618 1.012749558 1.049102267 0.970499575 1.066364615 1.07219745 1.070445633 121707184 phytase Aspergillus clavatus NRRL 1 Phosphorus Phytic acid hydrolysis NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 0.763438662 0.847455786 0.799080164 0.852947906 0.777000398 0.882191875 328886666 RgaE Streptomyces venezuelae ATCC 10712 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces venezuelae; 0.830683672 0.852572439 0.837348431 0.799604587 0.822600805 0.803532924 0.83829803 0.809701384 0.825045424 0.835540725 0.810506555 0.793961453 0.813808852 129279124 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.998136688 0.983777167 0.977243642 0.988776048 1.013684587 0.980049133 0.997453987 1.012759598 1.035265523 0.9935044 0.990829467 1.013787606 0.96188243 0.986748276 0.928918186 0.913055975 1.006235276 1.002370573 78061482 atzb Burkholderia sp. 383 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 0.846318271 0.892896969 0.82307852 0.784810015 0.847493412 0.809487336 0.818839905 0.812692621 0.868373001 0.887517604 113955530 PRK Synechococcus sp. CC9311 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 0.840988437 0.820716811 0.804676094 0.843811403 0.84977342 0.83223004 0.864883376 0.818419439 0.85358202 0.837602978 0.834239803 0.871761426 0.77907989 0.791459269 0.848980573 0.858660964 154498821 dsra Bacteroides capillosus ATCC 29799 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;genus:Pseudoflavonifractor;species:Pseudoflavonifractor capillosus; 0.878377133 0.905675478 0.868817904 0.908948863 0.858260298 0.868564013 0.866195977 0.906110688 0.833024127 0.866174624 0.817237339 0.941692751 0.928687619 298550441 amyA Deinococcus radiodurans R1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus radiodurans; 0.878685844 0.83349386 0.945659877 0.886717381 0.891086885 0.849582139 0.875588455 0.850743633 0.807515135 0.841820775 0.861839734 0.839257354 0.833339987 0.919062413 0.846862636 119947761 gdh Arthrobacter aurescens TC1 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter aurescens; 1.037297331 1.057253649 0.995074215 1.036578808 1.018493701 1.034745079 0.975372935 1.027512761 0.982770168 0.99081326 0.986800753 1.024751602 0.993142683 0.993513254 0.962322363 1.001043324 1.052595907 1.025440499 121604928 proO Polaromonas naphthalenivorans CJ2 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 0.877321102 0.902439777 0.848924663 0.853737631 0.831076006 0.919146273 0.844680708 0.82622648 0.840468559 0.903439506 0.856253935 0.830625124 0.861165792 0.8425581 0.879653407 0.842540445 0.890347148 0.880866863 268318015 pme Rhodothermus marinus DSM 4252 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Bacteroidetes;order:Bacteroidetes Order II. Incertae sedis;family:Rhodothermaceae;genus:Rhodothermus;species:Rhodothermus marinus; 1.262842455 1.263282555 1.238420206 1.26189109 1.199946049 1.236981905 1.201620186 1.248581891 1.244984524 1.238243692 1.170238525 1.243603569 1.185813114 1.237691296 1.192896139 1.200847356 1.264192908 1.258964447 396470902 bph Leptosphaeria maculans JN3 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Leptosphaeriaceae;genus:Leptosphaeria;species:Leptosphaeria maculans; 1.011700239 1.003722601 1.03988827 1.092257069 1.060924043 1.009877489 1.048544084 1.110587833 1.077662624 1.030937848 1.043010209 1.07865432 1.050156214 1.000488847 1.036229993 1.03092076 1.051177493 0.988678978 347738120 tktA Azospirillum amazonense Y2 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum amazonense; 1.088077706 1.12213275 1.080788967 1.097251013 1.061220888 1.0999699 1.003263495 1.087407957 1.046321095 1.041960052 1.009520803 1.060377661 1.032386728 1.02426186 0.985067361 1.021906975 1.070775176 1.112593066 82411653 terc Nitrosospira multiformis ATCC 25196 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosospira;species:Nitrosospira multiformis; 0.990149675 0.96046491 0.954568779 0.973942529 0.935376102 0.957167475 0.96191033 0.983520989 0.958965476 0.921804363 0.930847599 0.960906825 0.952266009 0.894198127 0.906784541 0.930772742 0.978302184 0.949068664 319413947 phenol_oxidase uncultured bacterium Carbon Cycling Carbon degradation Lignin superkingdom:Bacteria; 1.100012048 1.129896284 1.092958764 1.126237815 1.085982865 1.109323576 1.077838939 1.087724056 1.059875137 1.104275642 1.074011311 1.082323645 1.090255886 1.08968031 1.078192643 1.084919182 1.136205303 1.112608571 169851080 Dyp Coprinopsis cinerea okayama7#130 Organic Remediation halogenated compounds NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 1.001562937 0.989910702 0.98503445 0.954719355 1.002489562 0.984711646 0.970392718 0.933279591 0.963338828 0.984896466 0.981046192 0.959658207 0.945814519 0.981220039 0.992251885 0.979211265 1.005162543 1.041504865 89952081 alginase Saccharophagus degradans 2-40 Carbon Cycling Carbon degradation Alginate superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Saccharophagus;species:Saccharophagus degradans; 0.890037031 0.873543679 0.93701351 0.782863551 0.867107627 0.895768424 0.818883989 0.769420094 83647477 endochitinase Hahella chejuensis KCTC 2396 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Hahellaceae;genus:Hahella;species:Hahella chejuensis; 1.378584654 1.180731469 1.030472376 1.200392107 1.086208379 1.078965187 1.026053961 1.187616259 1.231777567 1.01301811 0.968165019 1.126549785 1.053142862 1.031712488 1.064486951 1.114364734 1.121249876 1.110880033 355468520 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.844477782 0.840434409 328544315 SoxA Polymorphum gilvum SL003B-26A1 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;species:Polymorphum gilvum; 0.891795696 0.862875398 0.874403386 0.872192354 0.908478947 0.898598846 0.861710946 0.813919066 0.893527368 0.891801187 0.851811669 0.856339191 0.828571384 0.815041039 0.9066492 0.889688315 261360538 cutinase Verticillium albo-atrum VaMs.102 Carbon Cycling Carbon degradation Cutin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticillium;species:Verticillium alfalfae; 0.955812568 0.963400804 0.970133708 0.949585724 0.993932739 0.991549745 0.984976713 1.003982129 0.900133154 0.98123147 1.007294004 0.977272879 0.947740596 0.903836068 0.834953551 0.853781449 0.936681905 0.998904526 45386225 narg unidentified bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.108396838 1.098607714 1.036311098 1.112562866 1.04977874 1.095364016 1.031308298 1.059735503 1.056124176 1.088309175 1.051859325 1.073085144 1.029037832 1.020792482 1.001675574 1.031767902 1.098545327 1.114641297 94471219 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.969237423 0.982766275 0.990690439 0.983514132 1.012847904 0.988525933 0.926352051 0.920343526 0.937502752 0.977022143 0.938383045 1.019323112 0.979560499 0.930526498 0.907831943 0.94914037 1.006630022 0.983253222 313837820 amyA Propionibacterium acnes HL037PA2 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium;species:Propionibacterium acnes; 0.82983108 0.815668209 0.865916724 0.859890936 0.872383256 0.820429772 0.857215017 0.837924585 0.843506061 0.873410317 0.864670583 0.802770444 0.812314712 319750377 amyA Isosphaera pallida ATCC 43644 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Isosphaera;species:Isosphaera pallida; 0.9215496 1.041226848 0.911282686 0.985578829 0.985643389 1.014592615 0.990689581 0.947993921 0.970227904 0.973857833 0.922642616 0.981532348 0.932175015 0.950401648 0.927728818 0.971888824 0.917881214 1.002093835 225045466 CsoS1_CcmK Clostridium asparagiforme DSM 15981 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium asparagiforme; 0.861717575 0.881257992 0.78525463 0.84401246 0.817723712 0.82373943 0.794619838 0.876753414 0.795380081 0.827576065 227483221 tktA Bradyrhizobium japonicum USDA 110 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium diazoefficiens; 0.953267493 0.973246879 0.881719549 0.925271584 0.910813525 0.869518688 0.908844256 0.862730363 0.910045098 0.914497664 0.838122274 0.942499337 0.942636856 0.874220477 0.816206646 0.845856862 0.903313348 0.96730159 77820052 nirs uncultured organism Nitrogen Denitrification NA 0.912383456 0.879283889 0.885837325 0.921353794 0.895449986 0.873766285 0.870942537 0.845160417 0.887598412 0.900952553 0.879059972 0.897528514 0.932273868 0.834296559 0.872368271 0.925845307 0.89686199 220962567 acetylglucosaminidase Caulobacter crescentus NA1000 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter vibrioides; 1.214255665 1.187638775 1.17908262 1.174453903 1.17036218 1.201441961 1.159331993 1.162414314 1.156273799 1.157867871 1.168584206 1.183958818 1.152325241 1.136610245 1.150856338 1.150038634 1.196991234 1.185929225 239910435 codh Thermococcus gammatolerans EJ3 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Thermococcus;species:Thermococcus gammatolerans; 0.955940947 1.002082417 0.97061021 0.979974172 0.952330413 0.978450876 0.928709277 0.938426175 0.919318932 0.927319938 0.94437011 0.958347752 0.95268235 0.923111957 0.922831037 0.955737506 0.985676584 0.980311814 214044219 mdlc Roseobacter sp. GAI101 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 1.301272252 1.24150115 1.229553433 1.267229741 1.240277004 1.266559317 1.212777624 1.234595647 1.227679881 1.223847602 1.24321127 1.232335562 1.20502814 1.203399612 1.233293056 1.222779126 1.26003946 1.213872208 344338575 pgk Thiocapsa marina 5811 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiocapsa;species:Thiocapsa marina; 1.223224235 1.231794571 1.191441712 1.209764319 1.152679994 1.212390302 1.155079096 1.195981164 1.188295733 1.202144227 1.177671771 1.205834884 1.147724369 1.171789002 1.142637776 1.150967605 1.227362341 1.228238615 359402470 mult_ring_12DiOx Novosphingobium pentaromativorans US6-1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium pentaromativorans; 0.885140735 0.903040993 0.85950067 0.889404021 0.873468881 0.862103612 0.873785871 0.897577645 0.896230397 0.869158137 0.870760014 0.872306182 0.878482839 0.877060469 0.832670856 0.877342687 0.896667866 148252823 trzn Bradyrhizobium sp. BTAi1 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.856730834 0.829701131 0.829191067 0.825998582 0.818417833 0.80143137 0.82175978 0.830846557 0.824002848 0.883857583 115588271 mdlc Pseudomonas aeruginosa UCBPP-PA14 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 1.28219562 1.271164625 1.245285503 1.26245648 1.227249754 1.301374341 1.224571261 1.257083759 1.238059356 1.238953974 1.236032141 1.255690228 1.214338074 1.230650048 1.227474196 1.234169586 1.277104658 1.248424029 334141075 one_ring_23diox Novosphingobium sp. PP1Y Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 0.871182397 0.868455257 0.869094848 0.892425462 0.868695296 0.862926237 0.866972186 0.832081348 0.836274722 0.831028211 0.803269843 0.822997944 0.824550309 0.894178609 0.899693604 21225075 badh Streptomyces coelicolor A3(2) Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 0.965297175 0.856836995 0.969475817 1.012212567 0.986451946 0.981548794 0.978563261 0.984467905 0.988475757 0.973565801 0.980103183 1.029942572 0.916326756 0.947657365 0.851552716 0.970839321 0.934961534 0.931115228 378948978 amyA Pseudomonas fluorescens F113 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 0.919564615 0.849878612 0.946733053 0.936453644 0.938188956 0.971923174 0.966180294 0.977273589 0.954907208 0.885085734 0.959754075 0.941486883 0.926609491 0.907465784 0.926517253 0.878032552 0.938700365 0.850354194 91700878 dehh109 Polaromonas sp. JS666 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 1.070363816 1.053824206 1.045109268 1.065340835 1.075311436 1.057186708 1.048949941 1.052663901 1.047024386 1.055514365 1.011624723 1.152452908 0.985141159 0.996389351 0.992409499 0.985824589 1.003054373 0.98989854 113932190 arsc Caulobacter sp. K31 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 0.99388193 1.013119198 0.957866522 0.983885423 0.953532858 1.019644889 0.961917984 0.965157297 0.97303292 1.037893987 0.969028631 0.999463123 0.986339944 1.047400938 0.985362833 0.948102303 0.988806922 1.023380176 39566 cda Bacillus licheniformis Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 0.884120094 0.875527873 0.850115669 0.903624809 0.925822353 0.865393651 0.87021939 0.859229392 0.880560936 0.827538015 0.827263093 0.830969322 0.872283151 0.881916957 223585979 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.805408071 0.862774041 0.876553308 0.843881256 0.817932586 0.823807905 0.812211534 0.855032959 0.875605094 0.850830575 0.877848769 83312163 amyA Magnetospirillum magneticum AMB-1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum magneticum; 0.986254511 1.02192505 1.009630346 1.0239974 0.954808109 1.052488008 1.07709424 1.035581232 1.006865333 1.033231773 0.954862538 1.017886224 0.960627592 0.994526758 0.941461154 0.956375015 0.994831661 1.036829422 356478422 cutinase Mycobacterium thermoresistibile ATCC 19527 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium thermoresistibile; 1.052032787 1.056541382 1.0315195 1.04222792 1.054053318 1.031496131 0.977411934 0.927604522 1.018277612 1.063358478 1.038949529 1.066755489 1.027512226 1.022721435 0.93948444 1.038021719 1.024607026 1.065111639 338823186 cysI Agrobacterium tumefaciens F2 Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 1.041682472 1.050218072 1.062919193 1.055326978 1.083771412 1.095027502 1.053363047 1.048042716 1.011068645 1.060690762 1.043720778 1.07457215 1.032029456 1.028708981 1.024378789 1.070011182 1.059300377 1.083480846 315442552 xylj Mycobacterium gilvum Spyr1 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 1.00375532 1.023185902 1.023773841 0.990512818 0.945939842 1.023074565 0.949262524 1.018188962 1.000669359 1.003301478 0.949173621 0.994885472 0.96480291 0.993154094 0.95196552 0.982786176 1.01478232 1.013654057 91788891 arylest Polaromonas sp. JS666 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 1.155593443 1.130088113 1.09515073 1.10818163 1.118360076 1.128694557 1.068821843 1.07325304 1.089105384 1.096397879 1.08731623 1.10990484 1.123608313 1.082761673 1.049994498 1.104879728 1.133822626 1.112485704 384467092 nosz Citreicella sp. 357 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Citreicella; 1.33420605 1.333061963 1.292592558 1.288704632 1.289416115 1.344582948 1.256725683 1.284716107 1.286429712 1.303387849 1.287534982 1.279840861 1.271896945 1.299407565 1.242508558 1.279885641 1.31327319 1.322777415 158523904 dsra uncultured bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.432438199 1.383638729 1.391670627 1.410696475 1.371183845 1.393526883 1.359987153 1.387827737 1.385571456 1.373631483 1.377517286 1.414223336 1.358805015 1.34887084 1.353293691 1.381943565 1.40944053 1.367947031 227069547 narb uncultured archaeon Nitrogen Assimilatory N reduction NA superkingdom:Archaea; 1.015474914 1.001193332 1.033562252 1.035784053 1.070684137 1.069635274 1.066475481 1.095697447 1.041095145 1.043834078 1.007644234 0.981802396 0.989300623 0.983589846 0.924033389 0.936039223 1.038526846 1.038283135 238550035 cara carbazole-degrading bacterium OC13S Organic Remediation Aromatics Heterocyclic aromatics superkingdom:Bacteria; 0.901183026 0.901613422 0.891650553 0.903288124 0.884043875 0.891006336 0.862715404 0.881217107 0.844474149 0.880104159 0.882003872 0.886474098 0.853007968 0.884935579 0.865026574 0.921355197 0.914257395 338741684 mer Hyphomicrobium sp. MC1 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium; 0.963523018 0.94389575 0.88411494 0.965727224 0.909411385 0.958689298 0.945503646 0.925964168 0.911366574 0.897379161 0.875348283 0.92366103 0.906059333 0.910549662 0.913867845 0.867961521 0.962582995 0.908549324 327546205 exaa(moxf) Oxalobacteraceae bacterium IMCC9480 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae; 1.071670417 1.04995977 1.072034296 1.028869077 1.034192487 1.099311823 1.098794696 1.056703978 1.044058313 1.072544974 1.058503436 1.038435916 1.020550402 1.01231471 0.997303226 1.001173652 1.076586458 1.060560006 217506425 nosz Thauera sp. MZ1T Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Thauera; 1.094500422 1.002126056 1.03734582 1.104128277 1.05094131 1.052576912 1.042320735 1.094107834 1.054488001 1.023603315 1.046359448 1.068751492 1.053499554 1.002841217 0.988003539 1.018347221 1.10660938 0.957747883 359838875 pcpb Actinoplanes sp. SE50/110 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes; 1.073047421 1.104913245 1.057079579 1.11355247 1.070713836 1.103269876 1.014852966 1.049178998 0.98998181 1.078344357 1.029631618 1.051357637 1.053665305 1.024655016 1.03964438 1.054403102 1.074914818 1.061391413 154687780 urec Bacillus amyloliquefaciens FZB42 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus amyloliquefaciens; 0.840714635 0.800436727 0.79927621 0.813874849 0.851809121 0.815784823 0.841970264 0.941133302 0.84856372 0.862527071 0.852175806 0.836098768 0.784414313 0.86705724 0.84994856 0.894255725 357391804 chitinase Kitasatospora setae KM-6054 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Kitasatospora;species:Kitasatospora setae; 0.859183315 0.952050206 0.798783946 0.808000737 0.847221393 0.79885886 0.794524422 0.819374083 0.840966119 0.871265609 327373315 catb Burkholderia gladioli BSR3 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia gladioli; 0.903131657 0.968894699 0.877126832 0.937120953 0.94271287 0.977844246 0.900732538 0.914597774 0.903921016 0.939882072 0.991340829 0.927490883 0.909408384 0.914030917 0.838938751 0.863503093 0.949416049 0.961322784 381181225 ppx Treponema saccharophilum DSM 2985 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema saccharophilum; 0.772845317 0.788984146 192764408 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.14526017 1.14014309 1.106629898 1.112111846 1.089643892 1.120257491 1.079487372 1.093646549 1.111392319 1.119262167 1.123726044 1.123080214 1.077289484 1.094775169 1.07060979 1.163680965 1.126483069 1.121907481 75677113 CsoSCA Nitrobacter winogradskyi Nb-255 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter winogradskyi; 0.991540693 0.977155223 0.946739471 1.004654968 0.940741495 0.979106294 0.933146847 1.002776644 0.963804743 0.996206772 0.977392571 0.97274169 0.961213108 0.941971322 0.949370341 0.973782308 0.994735181 1.008017559 118424365 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.094320722 1.072540689 1.012362354 1.107790723 1.077681864 1.083888552 1.04130419 1.06792415 1.090730749 1.063342134 1.020933765 1.068102411 1.031741656 1.043340325 1.006322057 1.068621767 1.077315208 1.083028988 373500837 amyA Prevotella micans F0438 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella micans; 0.840023289 0.819065379 0.834659563 115433835 cutinase Aspergillus terreus NIH2624 Carbon Cycling Carbon degradation Cutin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 0.800421743 0.886462223 0.795855414 0.788599355 0.816303898 0.839152172 0.813788426 0.826430096 288944227 vgb Thioalkalivibrio sp. K90mix Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio; 0.821450899 0.815034772 0.844934155 0.82317041 0.793703648 0.811735008 0.824787998 0.822057345 0.873059008 72123018 nagg Ralstonia eutropha JMP134 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 0.814681946 0.825975933 0.779214744 0.814513085 223587078 aoxb uncultured bacterium Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 1.230266318 1.206827009 1.201585069 1.2205798 1.204450169 1.215692763 1.212906874 1.234144801 1.197131657 1.190277805 1.186716126 1.181036587 1.165964899 1.152920224 1.13177503 1.171431727 1.201056837 1.197959247 345012521 tfda Streptomyces violaceusniger Tu 4113 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces violaceusniger; 1.157335562 1.133117016 1.125000345 1.133260706 1.119136935 1.159326713 1.116564486 1.090140764 1.115145409 1.117764861 1.115736026 1.129556693 1.110651289 1.106904586 1.103809748 1.12402943 1.132258454 1.118563949 14523756 nosz Sinorhizobium meliloti 1021 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium meliloti; 0.883625226 0.928852756 0.905070231 0.905008377 0.916219504 0.907190193 0.906993385 0.925824772 0.919691414 0.906869998 0.929073155 0.933369746 0.876584234 0.875317974 0.857192865 0.888072633 0.925627039 0.921269126 157011606 aps_apra uncultured bacterium Sulfur adenylylsulfate reductase NA superkingdom:Bacteria; 1.110008169 1.040595909 0.997240793 1.071031082 1.025452405 0.977155042 1.033905067 1.099391064 1.062474331 0.998692059 0.999614964 1.082740773 0.997802653 0.979861058 1.008917841 1.01698065 0.992850009 0.959176157 5453191 nosz Rhodobacter sphaeroides f. sp. denitrificans Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 0.850035109 0.87476316 0.883871927 0.890926052 0.871671402 0.818658635 0.877828957 0.847577862 0.874107206 0.842623916 0.863519774 0.86232673 0.808689388 0.855424807 340360147 amyA Actinomyces sp. oral taxon 448 str. F0400 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 448; 0.905889606 0.947605018 0.93756274 0.909381601 0.924919233 0.917061022 0.954912401 0.962918512 0.965152951 0.903623645 1.050389073 0.954859355 0.845428004 0.864696445 0.852543696 0.903017862 0.941639075 1.014314855 58615473 mcra uncultured methanogenic archaeon Carbon Cycling Methane Methanogenesis superkingdom:Archaea;phylum:Euryarchaeota; 0.999135426 0.970253791 0.97287361 1.010701705 0.982028564 0.947363638 0.966383326 1.015784649 0.959687734 0.94880044 0.945142747 0.960858228 0.861410663 0.869035956 0.866591427 0.89578975 0.978857788 1.001801995 239587701 cellobiase Ajellomyces dermatitidis SLH14081 Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces dermatitidis; 0.901331787 0.89822801 0.98852867 0.89598097 0.871419668 0.900419906 0.89542071 0.899628672 0.924308478 0.873875522 0.856197889 0.918151007 0.806676443 0.874439036 0.843012793 0.903986808 0.914315705 0.916579968 334142523 xylg Novosphingobium sp. PP1Y Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 0.935889166 0.949138419 0.936491521 0.990586801 0.932632045 0.941842838 0.915184458 0.886467346 0.883902478 0.899951775 0.949124227 0.879067457 0.900798869 0.891842656 0.852628171 0.900066316 0.924357414 0.946600647 154321485 exopolygalacturonase_fungi Botryotinia fuckeliana B05.10 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Botryotinia;species:Botryotinia fuckeliana; 0.974714157 1.006274064 0.991345035 0.977598281 1.020196815 0.955983304 0.940446359 0.998953063 1.042273321 0.999720679 0.995345002 1.080069686 1.007497769 0.996204853 0.99389996 0.988135607 0.986142436 0.999098943 261358199 pme_Cdeg Verticillium albo-atrum VaMs.102 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticillium;species:Verticillium alfalfae; 0.801909623 0.804740221 0.805991174 0.814100063 322709010 glx Metarhizium anisopliae ARSEF 23 Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Clavicipitaceae;genus:Metarhizium;species:Metarhizium anisopliae; 1.154231179 1.199885955 1.128754494 1.118050004 1.151879315 1.181180132 1.103195068 1.115349039 1.082248354 1.159253108 1.101395691 1.140532247 1.106784303 1.108434099 1.05419523 1.119012145 1.13259876 1.174426338 25045816 cpnb Rhodococcus sp. 789 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 0.888502019 0.882753466 0.915473542 0.912845501 0.822780554 0.935773472 0.845541572 0.903694479 0.852941075 0.84301205 0.853993399 0.853920133 0.880840994 0.923888378 0.900534351 296284160 ppx Citromicrobium bathyomarinum JL354 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Citromicrobium;species:Citromicrobium bathyomarinum; 1.226485474 1.171266577 1.192504371 1.222812443 1.18056538 1.175727191 1.130253275 1.211948329 1.229904761 1.189833242 1.195686008 1.215324101 1.164431285 1.167983544 1.142223351 1.170506302 1.211594089 1.199006008 196226834 arsc Chthoniobacter flavus Ellin428 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Verrucomicrobia;class:Spartobacteria;genus:Chthoniobacter;species:Chthoniobacter flavus; 0.970013721 0.995858374 0.993151987 1.079322604 1.014322879 1.013855819 1.012963912 1.004680793 1.002611096 0.98318533 0.982675154 1.029269134 1.001245322 0.972030491 1.003895902 1.002813826 1.023479288 0.997821271 151574904 atzb Ralstonia pickettii 12D Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 0.8179138 0.812987124 0.781633842 0.811703404 0.799966671 0.801233802 0.814721501 258528803 xyla Dickeya dadantii Ech586 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya dadantii; 1.220537716 1.217135665 1.198059588 1.205228781 1.178669196 1.225617199 1.189164968 1.21636331 1.193286795 1.213753658 1.174649836 1.185233429 1.155368242 1.184999998 1.119469445 1.187087682 1.186366338 1.197440214 270284319 fthfs Bifidobacterium gallicum DSM 20093 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium gallicum; 1.153046211 1.153120009 1.03859165 1.025835956 0.975692113 1.017479523 1.003147013 1.00172247 0.942439761 0.960375105 0.987389428 0.986642024 0.982024168 0.941996358 0.933382095 0.958605654 1.036480263 0.939891855 94549437 amyA Candidatus Koribacter versatilis Ellin345 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Acidobacteria;genus:Candidatus Koribacter;species:Candidatus Koribacter versatilis; 0.937870637 0.807302808 0.90123114 0.890927614 0.849991086 0.862797492 0.850816942 0.941478866 0.921440361 0.832080934 0.877437348 0.887611227 0.820449699 0.801141169 0.897638418 0.821038386 260060837 xyla Robiginitalea biformata HTCC2501 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Robiginitalea;species:Robiginitalea biformata; 0.893113389 0.831137113 0.816488983 0.858302613 0.857421633 0.808628101 0.812402988 0.782944002 0.816857499 0.801928235 0.856339614 0.812689397 0.829404654 0.883162437 0.831787497 192764402 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.922509439 0.98730705 0.956735243 0.961743952 0.909145455 0.926899061 0.93866818 0.953131221 0.988415003 0.930061798 0.900123904 0.90427342 0.905651058 0.879245261 0.933163903 0.899449623 0.944019426 0.966185634 68264609 alkb Corynebacterium jeikeium K411 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium jeikeium; 0.878692753 0.898784712 0.82167012 0.843823677 0.879647443 0.827324628 0.893412558 0.93440092 0.847576812 0.831649384 0.869727778 0.865652975 0.840165573 0.893559469 0.782516874 0.892644669 375099975 bend Saccharomonospora cyanea NA-134 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora cyanea; 0.923104578 0.992729962 0.968828266 0.976456327 0.942657143 0.904607664 0.881933872 0.904066797 0.89198138 0.914279384 0.936797008 0.921006952 0.938834538 0.918104108 0.921533242 0.933910761 0.966855402 0.945589782 177840308 fthfs Opitutus terrae PB90-1 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 0.920303503 0.967019679 0.925230627 0.931744785 0.949241191 0.974074871 0.942478019 0.953922188 0.900222502 0.925338006 0.918131244 0.957236976 0.943365938 0.925545907 0.930497695 0.976046072 0.95315447 0.94118172 315410271 ara Micromonospora sp. L5 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Micromonospora; 0.984827532 0.962272152 0.972846529 0.980258259 0.950094512 0.970739829 0.935968568 0.927090915 0.918326091 0.967018145 0.964036128 0.956078258 0.885541451 0.929260068 0.847038721 0.924269172 0.959851648 0.938398303 83815482 arsm Salinibacter ruber DSM 13855 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Rhodothermaceae;genus:Salinibacter;species:Salinibacter ruber; 0.952089764 0.959860889 0.889852272 0.950601622 0.894282308 0.963376683 0.935377183 0.939711792 0.88582677 0.907675999 0.89297258 0.908602845 0.892186977 0.876920352 0.864398315 0.932513936 0.936208193 0.970116406 256833442 mannanase Jonesia denitrificans DSM 20603 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Jonesiaceae;genus:Jonesia;species:Jonesia denitrificans; 0.956823573 0.934489402 0.836780706 0.848024515 0.812956282 0.836437111 0.856168834 0.80873386 0.815984366 0.835545588 0.831536143 60476334 dsrB uncultured bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.133895543 1.180983921 1.102206704 1.129928024 1.079391653 1.092466997 1.062274778 1.07950659 1.12384215 1.090007113 1.069781139 1.089163001 1.053546135 1.075417809 1.059494548 1.074883144 1.129079655 1.107611032 407974344 b_lactamase Nitratireductor indicus C115 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Nitratireductor;species:Nitratireductor indicus; 0.853395682 0.922351102 0.8752485 0.88716025 0.909383308 0.891670976 0.81927315 0.828596013 0.804404462 0.821382352 0.832561078 0.827372184 0.892674185 0.936653727 332273991 ccmL Rhodobacter sphaeroides WS8N Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 1.036108006 1.020488003 1.015205174 1.010035804 0.969813299 1.001581805 1.013926628 0.982126751 0.976153796 0.954925538 1.002085499 1.023039192 0.977473481 0.939008721 0.954773823 0.985030456 1.007042754 0.986439305 119376802 cmci Paracoccus denitrificans PD1222 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 1.186738409 1.148700912 1.174351028 1.127321043 1.224605144 1.161164531 1.273994289 1.13315737 1.110400773 1.261518996 1.218543153 1.181594455 1.166513388 1.255659104 1.177938866 1.195328611 1.143835882 1.169721358 308737189 narg uncultured prokaryote Nitrogen Denitrification NA 0.862259599 0.89570698 0.900696497 0.865675845 0.860580182 0.872077678 0.890483484 0.885206059 0.879429232 0.899109987 0.883204203 0.868643974 0.82432325 0.809389105 0.85566132 0.904232216 0.897768705 162072839 dsrB Chlorobium limicola Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium; 0.891201651 0.895751224 0.887410751 0.904599051 0.899342311 0.897466858 0.886450583 0.896730412 0.899384419 0.881905784 0.90657431 0.891169679 0.86168917 0.852560462 0.844933159 0.887493932 0.862149038 145590791 tmoabe Pyrobaculum arsenaticum DSM 13514 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum arsenaticum; 1.321232128 1.270041585 1.257606282 1.283786357 1.245594387 1.317811616 1.254322592 1.27601624 1.258336696 1.248028483 1.251229785 1.254409544 1.243826466 1.239832128 1.252527383 1.259226422 1.305519035 1.260142141 325060639 cysI Agrobacterium sp. H13-3 Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium; 0.766477749 0.840118631 335947873 acetylglucosaminidase Bacteroides sp. 1_1_30 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides; 0.93513992 0.925328832 0.926714321 0.917910827 0.927801552 0.914410921 0.923217544 0.925625577 0.933019475 0.936732382 0.92622625 0.929279247 0.925111724 0.939566993 0.927927006 0.882422633 0.932988343 0.951378567 257054347 ppx Saccharomonospora viridis DSM 43017 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora viridis; 1.245857978 1.232423249 1.256414378 1.233271084 1.216898387 1.241928795 1.16740615 1.236123229 1.225095841 1.223999611 1.18457975 1.23340654 1.209972998 1.196785024 1.253964959 1.242707359 1.294749627 1.264137172 110286752 tktA Chelativorans sp. BNC1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 0.885968536 0.821720166 0.816268501 0.863428907 0.841807177 0.797976348 0.801448317 0.777873777 0.843004284 0.841361249 0.916966917 0.865728116 268679714 sucD Sulfurospirillum deleyianum DSM 6946 Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Sulfurospirillum;species:Sulfurospirillum deleyianum; 0.892894704 0.987458512 0.887327176 0.94373336 1.10819929 0.974254726 0.972800389 0.857884584 0.964010243 0.964220914 1.027903255 1.085695239 0.984291348 0.908085947 0.884374051 0.960779592 0.930632732 0.89259198 161339349 catechol_b uncultured bacterium Organic Remediation Aromatics Other aromatics superkingdom:Bacteria; 1.016738737 0.919492767 0.958476129 0.942498167 1.02681032 0.979784865 0.979333352 0.936210859 1.022809291 0.965159745 0.965848459 1.035483873 0.995175009 0.968321067 1.059201778 0.970333678 0.977797072 0.990410352 343923445 fthfs Prevotella oulorum F0390 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella oulorum; 1.050127787 1.027304678 1.096141959 1.13180848 1.07803297 1.173580739 1.099296827 1.11804956 1.094827173 1.054703397 1.06002369 1.076321476 1.031052714 1.018846496 1.016154279 1.031080836 1.033258502 1.029041925 385763959 SoxB uncultured bacterium ws198A12 Sulfur Sulfur Oxidation NA superkingdom:Bacteria; 1.119507282 1.187455777 1.191055078 1.148512055 1.172325465 1.160322116 1.155170714 1.135796987 1.157516881 1.185935517 1.183472571 1.168339591 1.168807106 1.142771264 1.11068343 1.163500354 1.141647431 1.152663437 149179477 amyA Planctomyces maris DSM 8797 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Planctomyces;species:Planctomyces maris; 0.821447026 0.840256833 0.834240905 0.871009594 0.866369171 0.843198587 0.831414385 0.870690896 0.840923574 0.837859398 0.874041133 0.845335148 0.814849459 0.816159897 0.838973976 0.821629963 0.839315262 317132932 amyA Ethanoligenens harbinense YUAN-3 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ethanoligenens;species:Ethanoligenens harbinense; 0.835433921 0.880165701 0.983070269 0.858180565 0.83618657 0.851725043 0.861265793 0.851729315 0.854229669 0.829168728 0.846707829 0.845070777 0.844245094 0.815532684 0.856079345 0.863080239 0.893104044 85670215 pgk Roseovarius sp. 217 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 1.114492964 1.096833726 1.11899609 1.083631584 1.059309439 1.076165016 1.038834912 1.04932216 1.09048793 1.072228504 1.074554639 1.105278895 1.047465911 1.043375557 1.121311306 1.042605355 1.103247216 1.129181559 379990417 dsrB uncultured bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.870890273 0.814582912 0.856912849 0.834801824 0.815191571 0.837411472 0.841758081 0.808882524 0.828797779 0.845307953 0.793018681 330965831 bphF1 Pseudomonas syringae pv. actinidiae str. M302091 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae; 0.79456529 0.798679346 0.810334299 0.866691531 0.863134503 0.885947521 0.806535038 0.83419319 0.869472536 296393694 amyA Segniliparus rotundus DSM 44985 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Segniliparaceae;genus:Segniliparus;species:Segniliparus rotundus; 0.820656059 0.890976513 0.852607308 0.802822607 0.841323375 0.804637217 0.863426431 163664452 ppx Methylobacterium extorquens PA1 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium extorquens; 1.554516027 1.552805072 1.530532264 1.530237773 1.499501709 1.588261107 1.493937672 1.512353479 1.505577674 1.512232502 1.508196276 1.48649018 1.481770581 1.481766944 1.444473139 1.484732599 1.548414357 1.506123004 113935746 xylanase Caulobacter sp. K31 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 0.861225447 0.84925295 0.86091812 0.820503942 0.818410517 0.846693306 0.818228636 0.834388871 0.861163396 0.873125238 295899912 cutinase Mycobacterium parascrofulaceum ATCC BAA-614 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium parascrofulaceum; 1.148629822 1.178452844 1.139517817 1.133531031 1.151920584 1.161948094 1.140933618 1.159793367 1.127360661 1.108979763 1.134308839 1.129068153 1.114199663 1.08453282 1.061392927 1.100239894 1.135071183 1.140849908 209967303 tktA Rhodospirillum centenum SW Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum centenum; 1.280474534 1.309535354 1.237432695 1.302461951 1.264089703 1.334334693 1.235922397 1.252682066 1.227315818 1.276437409 1.231041661 1.259115774 1.28355083 1.267673744 1.223948861 1.259685011 1.316096011 1.28163294 94554210 xyla Deinococcus geothermalis DSM 11300 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus geothermalis; 1.119940118 1.118505045 1.104781996 1.133240959 1.146900853 1.125253058 1.122102815 1.106021396 1.112256192 1.110310062 1.125417189 1.13969397 1.125528096 1.081649299 1.08317979 1.113827254 1.133268019 1.108311218 302682021 p450aro Schizophyllum commune H4-8 Organic Remediation Aromatics polycyclic aromatics superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 0.951258213 0.933492837 0.938414427 0.92836874 0.928252765 0.909812079 0.855997078 0.91902522 0.945883216 0.943588912 0.896347564 0.979000718 0.915675677 0.912364152 0.877141343 0.916072959 0.945907338 0.936762349 194562390 arsc Burkholderia dolosa AUO158 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia dolosa; 0.96406416 0.950294957 0.934454132 0.940037905 0.909229772 0.974266943 0.901415862 0.876647795 0.931774964 0.889738599 0.931602332 0.895986467 0.889246347 0.831992161 0.887471515 0.843790699 0.973463012 0.959285362 357589288 bphd Corynebacterium nuruki S6-4 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium nuruki; 1.140195945 1.112262836 1.095697254 1.140425781 1.086590764 1.120849414 1.084160859 1.117963887 1.123067506 1.08744803 1.107675671 1.139055945 1.085977029 1.077881779 1.084661465 1.106189443 1.097872128 1.086907226 339018559 vana Acetobacter tropicalis NBRC 101654 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acetobacter;species:Acetobacter tropicalis; 1.14638177 1.124884749 1.13885412 1.139294078 1.106544743 1.111891579 1.01491377 1.071767 1.124093426 1.131169575 1.132218841 1.089254277 1.111160453 1.071916402 1.033993538 1.073316732 1.162293207 1.112104405 337279018 SoxB Ramlibacter tataouinensis TTB310 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Ramlibacter;species:Ramlibacter tataouinensis; 0.896732946 0.950694401 0.904094675 0.932650887 0.933202047 0.925810844 0.88349601 0.865447496 0.952882497 0.926634545 0.926425788 0.896094881 0.900851155 0.898958315 0.905762369 0.851869784 0.941849705 121609742 toma Verminephrobacter eiseniae EF01-2 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 1.24920278 1.256677608 1.186724076 1.169435109 1.184010856 1.236214084 1.152482579 1.186837751 1.177292403 1.189711388 1.196139536 1.181790237 1.158964679 1.201295412 1.150872413 1.164841768 1.224919346 1.229184474 116255285 cmci Rhizobium leguminosarum bv. viciae 3841 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 0.880627658 0.909761156 0.922163837 0.988244733 0.923774932 0.940605166 0.970515698 0.965755387 0.928261865 0.93917163 0.956420324 0.96295062 0.923813201 0.928148227 0.917922963 0.858708334 0.957818842 385675605 bphd Amycolatopsis sp. ATCC 39116 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis; 1.132016704 1.129394947 1.101437921 1.122047444 1.065900497 1.11307987 1.078862115 1.141168598 1.10251948 1.090294431 1.092524645 1.117864457 1.084483402 1.092207789 1.058037712 1.085135149 1.115635071 1.129200352 209401594 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.374168115 1.334440351 1.349085566 1.440839485 1.361396949 1.372968211 1.35988652 1.405975213 1.372081864 1.345247797 1.368572135 1.40717567 1.334002023 1.317901478 1.349661494 1.363433237 1.349796444 1.300986285 334261848 narg uncultured organism Nitrogen Denitrification NA 0.932248807 0.984071375 0.938109079 0.940884743 0.893527148 0.954205966 0.940408963 0.903614897 0.891502039 0.964184926 0.924556379 0.912705301 0.953803135 0.932941993 0.918374267 0.941418314 0.899358543 0.967799302 219994700 tehb Thioalkalivibrio sp. HL-EbGR7 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio;species:Thioalkalivibrio sulfidophilus; 1.145173588 1.101124433 1.063183437 1.119357718 1.058323123 1.065414997 1.062105178 1.094372154 1.11437965 1.086013438 1.028047519 1.082781034 1.01832945 1.024493947 1.03747945 1.03994666 1.111028251 1.087895689 337751628 chitinase Paenibacillus mucilaginosus KNP414 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 1.107953686 1.109225802 1.097977427 1.087865912 1.100058862 1.131935463 1.092996525 1.083105585 1.075550652 1.088221037 1.080865154 1.079280772 1.072053841 1.101944715 1.086890045 1.079378016 1.141838943 1.118767755 124260397 soxY Methylibium petroleiphilum PM1 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 0.89210857 0.966791507 0.893552597 0.895387584 0.868375353 0.926137371 0.831185149 0.877011909 0.902744155 0.902574274 0.874345516 0.914640414 0.865461736 0.87769229 0.889407979 0.831723223 0.919841873 0.938247311 184197545 exaa(moxf) Burkholderia phymatum STM815 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 1.152958902 1.113388804 1.141488929 1.137404687 1.147195667 1.150363722 1.120496364 1.121895647 1.112182934 1.096659146 1.123847358 1.127915014 1.102935997 1.07227622 1.080934186 1.083947819 1.16590284 1.130826467 319783965 tktA Mesorhizobium ciceri biovar biserrulae WSM1271 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium ciceri; 0.925114501 1.041763836 0.955869896 0.912279547 0.947013249 1.026957928 0.901670578 0.983783554 0.980976242 0.962394357 0.916293185 0.93864911 0.907925912 0.885967304 0.929073296 0.957435627 1.013717567 0.997537712 110648096 cysJ Alcanivorax borkumensis SK2 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax;species:Alcanivorax borkumensis; 0.964998672 0.895346125 0.843909657 0.851296513 0.984075927 0.896235357 0.923867543 0.81173393 0.917897922 0.914789478 0.942754128 0.917038174 0.88008388 0.849490563 0.860844847 0.856949489 0.861543581 0.907356504 94501701 mer Oceanobacter sp. RED65 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Bermanella; 0.838334412 0.844561794 0.895997029 0.846171995 0.855609357 0.861797672 0.859204052 0.815304243 0.92098798 0.860560761 0.806538471 407362149 catechol Pseudomonas mandelii JR-1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas mandelii; 0.779876528 0.794503905 0.815043754 332180066 ppx Treponema brennaborense DSM 12168 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema brennaborense; 0.888365854 0.812810684 0.874689859 0.91595693 0.857557833 0.856239991 0.829279705 0.873076865 0.872980306 0.833049215 0.846971926 0.826349818 0.822028995 0.860276209 0.816481103 0.887986028 0.807288753 408781123 bphc Mycobacterium kansasii ATCC 12478 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium kansasii; 1.053772274 1.073050932 0.853595296 323365028 nifh uncultured microorganism Nitrogen Nitrogen fixation NA 0.787692719 0.800052804 0.78715836 309393257 cysI Stigmatella aurantiaca DW4/3-1 Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 1.096062601 1.0811885 1.003108651 1.030403785 0.973107159 1.039698424 0.998813545 1.03918827 1.044599412 1.038945282 1.06888048 1.018581856 0.994400818 1.002185154 0.945692416 1.025481064 1.065348388 1.073923132 328948240 amyA Treponema succinifaciens DSM 2489 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema succinifaciens; 0.764333683 0.797696175 0.819848325 0.783969633 0.817962299 0.794749824 0.838614377 0.8283159 0.814121636 0.796450286 0.818326556 56695895 soxY Silicibacter pomeroyi DSS-3 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 0.93393745 0.980828206 0.875962602 0.937451741 0.9134706 0.911963968 0.892617203 0.893309042 0.877824403 0.9184093 0.882327608 0.936605346 0.843712389 0.870965655 0.843217361 0.94950419 0.959782098 373854786 terc Opitutaceae bacterium TAV5 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 1.00023414 1.029422709 0.981404685 1.08100846 1.021241368 1.042881923 1.099073749 0.96675678 1.200813706 1.015107601 0.991491303 1.094299038 1.035829847 0.918300419 1.049194131 0.935452939 0.986066879 1.043633426 217506389 fccab Thauera sp. MZ1T Sulfur Sulfide Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Thauera; 0.920619285 0.887698384 0.912635295 0.922404967 0.897255884 0.920738891 0.937738465 0.8992174 0.877766183 0.872294752 0.875962318 0.882336915 0.867388303 0.848288797 0.830035353 0.90347611 0.911480836 378783111 mer Blastococcus saxobsidens DD2 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Geodermatophilaceae;genus:Blastococcus;species:Blastococcus saxobsidens; 1.168423118 1.164563977 1.125295513 1.153110452 1.114050045 1.151241058 1.130254072 1.126738912 1.138401014 1.128283567 1.113504409 1.14010563 1.117906824 1.093204056 1.129778186 1.127934781 1.167234465 1.144177146 13517319 amyA Erwinia rhapontici Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia; 0.920404293 0.840016482 0.858033981 0.903511232 0.894815017 0.849583859 0.898202989 0.905741873 0.915239546 0.835668279 0.887760566 0.88404445 0.796395712 0.809870581 0.81872428 0.793576196 0.880653621 0.879795042 218886707 dmsa Desulfovibrio vulgaris str. 'Miyazaki F' Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio vulgaris; 1.161158736 1.162214483 1.141086346 1.137828893 1.104775367 1.14503849 1.092755308 1.130960478 1.119532744 1.123240576 1.097069389 1.145258183 1.086835149 1.117971929 1.063530933 1.107869238 1.169456472 1.149818352 188991098 amyA Xanthomonas campestris pv. campestris str. B100 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas campestris; 1.035658163 1.046899774 1.014013822 1.058153751 0.996310124 1.011913111 0.981521183 0.983709381 0.99306447 0.98553171 0.998547933 0.981587418 0.983898521 0.936821612 0.945315889 0.972499469 1.075058355 1.051615294 118468526 cdh Mycobacterium smegmatis str. MC2 155 Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 1.027430439 1.048349563 1.018900993 0.992690395 1.019427517 1.025813872 1.005465331 0.994588572 1.008335039 1.040007382 1.015221115 1.022599151 0.964648816 0.995878553 0.969323787 0.993449946 0.979556085 1.052144611 355540892 amyA Mesorhizobium amorphae CCNWGS0123 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium amorphae; 1.319922696 1.310060839 1.27786345 1.313003601 1.280378658 1.314779761 1.267638424 1.294418823 1.289431696 1.259763926 1.288285315 1.291538708 1.262489004 1.256418235 1.235032838 1.268054474 1.311796902 1.278161388 133754625 phenol_oxidase Neurospora sp. A004 Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Neurospora; 1.109510874 1.071763492 1.129451841 1.088551214 1.143510621 1.186623119 1.111852417 1.124945125 1.105948403 1.119074846 1.145968741 1.139058462 1.108207441 1.103841668 1.092570427 1.152677185 1.120871136 1.082104141 379989191 dsrB uncultured bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.782957369 0.839232676 0.853136366 0.836806954 0.867303206 0.857935955 0.834056043 209401958 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.167503598 1.180980499 1.154808971 1.159865088 1.163381109 1.186844632 1.145410466 1.14119946 1.15587725 1.144203602 1.171374558 1.163683045 1.14727651 1.12672993 1.125456036 1.162161645 1.159708008 1.151068377 229473067 dsrB uncultured bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.051151967 1.014481036 0.925269933 1.015932793 0.912122723 0.966115364 0.933510835 0.981669674 1.021899996 0.966021695 0.962222165 0.965083235 0.933332009 0.935376633 0.922276547 0.94367693 1.033388913 0.982372347 113733431 ara Caulobacter sp. K31 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 0.972007791 0.910569923 0.91595627 0.967805897 0.897848351 0.92146479 0.929651157 0.939405764 0.978487592 0.953661123 0.943820915 0.932593536 0.901187024 0.88057126 0.893600622 0.935929788 0.976291783 0.943676262 383641843 mer Sphingomonas elodea ATCC 31461 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas elodea; 1.179364798 1.172227773 1.142474798 1.130271646 1.147291649 1.168767286 1.145866138 1.113704861 1.159477606 1.1508108 1.149281265 1.139371263 1.117890306 1.10989961 1.062576149 1.12059171 1.159564441 1.162648566 172056884 ppx Exiguobacterium sibiricum 255-15 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium;species:Exiguobacterium sibiricum; 1.170910197 1.138167028 1.099824007 1.155858593 1.112438366 1.116872213 1.123117231 1.138755129 1.153728144 1.127632047 1.04877501 1.127597959 1.097988412 1.110970254 1.091380886 1.107367934 1.146011265 1.131525494 379044746 arsc Frateuria aurantia DSM 6220 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Frateuria;species:Frateuria aurantia; 1.017001473 0.952924174 0.953256184 0.941078749 0.961352254 0.960340915 0.987424694 0.937582633 0.95600805 0.973801019 0.991704278 0.970750181 0.954194999 0.975286933 0.844292837 0.923733222 0.952221604 0.969352092 1322079 phenol_oxidase Trametes villosa Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Trametes; 1.041987668 0.952589129 1.051201889 1.034233306 1.051322705 1.083405709 1.051995002 1.071940593 1.03004258 1.053167932 1.035070281 1.022726462 0.963889681 1.05185473 0.932809396 0.93252655 1.164166876 1.039740881 374922739 arra uncultured bacterium Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 0.895895079 0.884161846 0.887633492 0.878509375 0.8959916 0.884936869 0.90722093 0.894855666 0.880872936 0.91836632 0.961883485 0.887543109 0.967774543 0.8783793 111151678 badh Frankia alni ACN14a Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia;species:Frankia alni; 1.006901536 1.000212584 1.003544518 0.988396014 0.987736854 1.015685816 1.003248728 1.014301439 1.01969126 1.008623148 1.012534028 1.003384222 0.974401256 0.951713404 0.957453772 0.95499353 1.011901067 0.994871806 326318955 xylj Acidovorax avenae subsp. avenae ATCC 19860 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax avenae; 0.84257876 0.842722928 0.853978996 0.780487706 0.811184111 0.859246982 0.783388007 0.839514784 0.849919548 0.834131409 126734021 GAPDH_Calvin Roseobacter sp. CCS2 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 0.84489224 0.819059713 0.885669231 0.913028502 0.911484519 0.893138522 0.925634227 0.910150003 0.837557297 0.855515749 0.89998921 0.85026941 0.825263307 0.87502857 0.807819757 0.877236019 0.845829568 332014210 amyA Sphingomonas sp. S17 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 0.781119413 0.785698726 56696200 nhh Silicibacter pomeroyi DSS-3 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 0.84249871 0.793489851 0.837952238 0.822583047 229916298 amyA Exiguobacterium sp. AT1b Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium; 0.891600379 0.877477996 0.906690462 0.915536316 0.905467748 0.901801356 0.898393338 0.930750561 0.990926402 0.886998613 0.87738788 0.901837995 0.858751056 0.892079412 0.839181016 0.853007411 0.873360886 0.885845022 227821237 TIM Sinorhizobium fredii NGR234 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium fredii; 1.001432754 0.995253132 0.959848507 0.969957708 0.977507704 0.970167756 0.916732413 0.919256664 0.942226557 0.968730037 0.929755198 0.968879572 0.975248393 0.929444338 0.919278042 0.938244223 0.968632832 0.981232125 66474859 cmua uncultured bacterium Organic Remediation Chlorinated solvents NA superkingdom:Bacteria; 1.010459879 1.01538783 0.959421656 1.010697202 0.962848945 1.09214983 0.978738814 0.984246183 0.966053707 0.99303396 0.956283764 0.984722097 0.962406031 0.998104914 0.975469456 1.001341919 0.997067708 1.055635094 134142919 alkb uncultured bacterium Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria; 0.813583377 0.819071862 0.818617867 0.796411391 0.813729391 0.823013127 59892268 nifh uncultured forest soil bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 1.128854079 1.122073733 1.124261802 1.152898489 1.113031245 1.135016793 1.078514782 1.098694401 1.104210247 1.116168082 1.11758013 1.127214609 1.141722276 1.077816218 1.09208666 1.11868849 1.141880767 1.085569321 224962625 cysJ Erwinia pyrifoliae Ep1/96 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia pyrifoliae; 0.91962069 0.868782507 0.894845507 0.862354553 0.875954137 0.798559903 0.852471309 0.918694671 0.86881231 0.91408928 0.876337778 0.85881846 0.827945877 0.924522212 0.959919523 296254254 soxY Methylosinus trichosporium OB3b Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylocystaceae;genus:Methylosinus;species:Methylosinus trichosporium; 1.028172777 0.976489593 0.969275172 0.973875574 0.962315754 1.045937446 0.935528395 1.044050165 1.003908558 0.987213025 1.007069207 0.967894516 0.926728478 1.013275456 0.959131652 1.001644468 1.053315528 1.005200387 309261243 phenol_oxidase Verrucomicrobiaceae bacterium CR28 UNDR-2009 Carbon Cycling Carbon degradation Lignin superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobiaceae; 1.151755285 1.145538526 1.113552056 1.137130003 1.102546435 1.151497385 1.10511851 1.134102272 1.124390179 1.105463529 1.128392605 1.11596001 1.114176414 1.056684371 1.063253801 1.062882289 1.149964538 1.098635187 219948697 phn Methylobacterium nodulans ORS 2060 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 0.769456898 0.821511911 0.809283639 0.814784572 0.826030502 0.78000627 0.79452545 0.812886074 343798032 ccmL Thiocapsa marina 5811 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiocapsa;species:Thiocapsa marina; 1.142100963 1.160951989 1.153555964 1.123515557 1.127394306 1.145986053 1.096388233 1.109784903 1.099409206 1.106092394 1.122840533 1.126397891 1.143182005 1.10972036 1.121456858 1.111182282 1.162928627 1.103804616 308176239 poba Arthrobacter arilaitensis Re117 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter arilaitensis; 1.282230742 1.287615223 1.250648776 1.252943357 1.245908366 1.290352198 1.241346213 1.243873939 1.239985873 1.252544626 1.232798882 1.251931297 1.219670418 1.225953911 1.186772905 1.255176558 1.240805662 1.257937418 305675948 Sir Bacillus subtilis subsp. spizizenii str. W23 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus subtilis; 1.296935253 1.229156836 1.228585044 1.284758792 1.2166548 1.217380411 1.233467942 1.250108793 1.255039788 1.219121039 1.23548006 1.290035907 1.188356377 1.208114785 1.201404275 1.210285421 1.232812446 1.233945711 344039206 pcpb Streptomyces violaceusniger Tu 4113 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces violaceusniger; 1.010536161 1.034597746 0.966916049 1.014875408 0.940474147 1.006310867 0.976221275 0.973539247 0.935027557 1.011569469 0.926199073 0.980501117 1.007713886 0.93164825 0.942356053 0.966629032 1.009518165 0.969107766 338783338 cysJ Achromobacter xylosoxidans AXX-A Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter;species:Achromobacter xylosoxidans; 1.045670438 1.047169655 1.053559378 1.053205549 1.032234388 1.088212667 1.061577447 1.034938962 1.032037769 1.058613087 1.059762869 1.062049774 1.025571932 1.023725537 0.97906398 0.98823086 1.08813528 1.079473112 119670548 catechol_b Azoarcus sp. BH72 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 0.782007455 0.803122548 58038977 pgk Gluconobacter oxydans 621H Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconobacter;species:Gluconobacter oxydans; 0.798020045 0.788731689 0.838966556 0.833482664 0.849664462 349784065 arsc Thermobacillus composti KWC4 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Thermobacillus;species:Thermobacillus composti; 1.158595716 1.112579411 1.13100929 1.108382299 1.036584221 1.147539558 1.070301546 1.140639648 1.154027012 1.088059421 1.094519581 1.074311512 1.107923886 1.079841954 1.01494743 1.085683443 1.114898336 1.116759193 374991338 rgl Streptomyces bingchenggensis BCW-1 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces bingchenggensis; 0.805379173 0.819647222 0.818334462 0.850055284 0.81936492 0.840462216 0.850559745 0.82331999 0.863995781 26278720 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.018402155 1.027891043 0.925504981 0.941719707 0.923772652 0.983149173 0.945981139 0.928888096 0.900500785 0.964590893 0.894679186 0.929354953 0.908584441 0.938443048 0.944351866 0.943136442 0.989791192 1.000297913 342316550 aoxb uncultured bacterium Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 0.927797163 0.968157413 0.959436678 0.999750253 0.971039778 0.985983003 0.997115418 0.985493827 0.957488484 0.924025251 0.952700887 0.961765974 0.957705274 0.933349761 0.933348189 0.951398942 0.960004859 0.961508347 63029769 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.92740876 0.954699424 0.905049886 0.950568731 0.875323498 0.895906749 0.900881116 0.92883898 0.930546928 0.934782728 0.821302128 0.896314473 0.824737168 0.878321103 0.844776144 0.871920277 0.95545172 0.949885293 313665973 alkb Rhodococcus sp. BCP1 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 0.82683171 0.811929546 0.795387226 0.804524004 0.842502202 0.817717044 0.779325904 0.86046635 357977555 phytase Sphingomonas sp. KC8 Phosphorus Phytic acid hydrolysis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 0.895553156 0.843067163 0.859916669 0.918331741 0.805519069 0.836364702 0.908369438 0.848636011 0.827044768 0.940170994 0.798805645 157804784 aps_apra endosymbiont of Inanidrilus makropetalos Sulfur adenylylsulfate reductase NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 1.171335154 1.174407692 1.121897425 1.185311699 1.14285936 1.176686781 1.089893063 1.165495848 1.156099104 1.176359243 1.122954753 1.178929301 1.160228242 1.125558518 1.184898181 1.102234622 1.183320292 1.151333868 118473639 linb Mycobacterium smegmatis str. MC2 155 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 0.844379167 0.864019219 0.937618621 0.89405877 0.910254835 0.947235306 0.879608167 0.868003277 0.957106322 0.934935671 0.850399926 0.881793211 0.967183557 0.978412689 0.89743701 0.88878877 0.912106765 377816547 arsc Pantoea stewartii subsp. stewartii DC283 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea;species:Pantoea stewartii; 1.305727865 1.306523696 1.239366454 1.280237462 1.28765822 1.304621683 1.263407289 1.263704391 1.269765596 1.260577309 1.257938509 1.243893487 1.264966065 1.256020615 1.231208781 1.252992948 1.299532675 1.285620976 261372847 rgl Fibrobacter succinogenes subsp. succinogenes S85 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Fibrobacteres;class:Fibrobacteria;order:Fibrobacterales;family:Fibrobacteraceae;genus:Fibrobacter;species:Fibrobacter succinogenes; 0.799961374 0.782977568 0.798993654 0.786616357 0.779279005 0.79070825 0.851648337 307545821 nasa Halomonas elongata DSM 2581 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas;species:Halomonas elongata; 1.336761314 1.30707224 1.271769127 1.306480198 1.265740224 1.333534767 1.264496953 1.273497566 1.282927785 1.291000933 1.291134617 1.294725897 1.256992377 1.248653725 1.251245927 1.271213191 1.320085118 1.288877806 398066554 pcpe Rhizobium sp. CF122 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 1.33267901 1.297146868 1.288226257 1.300808879 1.35229027 1.300131588 1.292880261 1.314724754 1.28070684 1.301600375 1.30118335 1.319664238 1.26714706 1.269576312 1.263991415 1.305884434 1.248233481 1.275741664 407304071 linb Nocardia brasiliensis ATCC 700358 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia brasiliensis; 1.036388006 1.014680087 1.01937732 0.989496329 1.0412263 1.086481647 1.030995239 1.001080112 0.999020744 1.018630574 0.990751335 0.990137475 1.00168805 1.051986548 0.940504129 0.995430881 1.01706797 1.033100972 359783040 FBPase Pseudomonas psychrotolerans L19 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas psychrotolerans; 0.863165761 0.894813782 0.87133521 0.989121682 0.954962773 0.859411641 0.901962213 0.868529258 0.947696237 0.872892692 0.911815621 0.939445432 0.941280311 0.841324348 0.878348218 0.873174033 0.856039938 0.842359781 119483872 endopolygalacturonase_fungi Neosartorya fischeri NRRL 181 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 1.108656229 0.963667217 1.065655931 0.996277861 1.073172056 1.061600405 1.079725391 0.954666485 0.989773384 1.07366362 1.074243573 0.990067742 1.071160334 1.20027765 1.044054151 1.024344289 1.040914941 1.025628832 302436234 xylg Streptomyces sp. AA4 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 1.107371091 1.065133961 1.081478097 1.071566422 1.052097043 1.03525631 1.011136309 1.053129204 1.070128755 1.074410535 1.070136092 1.085042089 1.055904781 1.05511854 1.0334849 1.080142956 1.083589375 1.08409055 384214833 linb Bradyrhizobium japonicum USDA 6 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 1.136344267 1.207632526 1.083041492 1.182510812 1.102606803 1.190293111 1.045794557 1.101820068 1.114791244 1.178621472 1.10237114 1.166109315 1.109365871 1.137860257 1.052304435 1.136609965 1.193408632 1.202644246 123443563 arsc Yersinia enterocolitica subsp. enterocolitica 8081 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia enterocolitica; 0.835097229 0.83631476 0.801679588 0.831480448 0.795440153 0.816206568 0.834324662 0.843937693 358754972 acetylglucosaminidase Granulicella mallensis MP5ACTX8 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Granulicella;species:Granulicella mallensis; 0.923261827 0.885066402 0.895968002 0.932236293 0.838556808 0.952763101 0.905586376 0.93217692 0.875159345 0.921241027 0.842967558 0.904992372 0.870951525 0.876307709 0.893661172 0.949160531 0.929202366 40742515 phospholipase_D_fungi Aspergillus nidulans FGSC A4 Carbon Cycling Carbon degradation Phospholipids superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 1.217724573 1.182834701 1.16234689 1.176977306 1.159143049 1.173062937 1.129505993 1.143540476 1.148615411 1.148400258 1.158838258 1.189911819 1.152982715 1.132257434 1.163436212 1.15037316 1.196236586 1.180860364 294884093 aoxb bacterium enrichment culture clone aoxheteroA4_4W Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 1.310398914 1.255496439 1.261070122 1.286315479 1.223160936 1.25823697 1.226673901 1.269683222 1.25821462 1.22623656 1.238415298 1.242335682 1.210548699 1.199058939 1.174793217 1.217367802 1.277597546 1.232097131 358637424 nosz Azoarcus sp. KH32C Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 0.909302356 0.97103788 0.902686768 0.95917755 0.881783679 0.887079199 0.851517838 0.876648189 0.879394741 0.874805717 0.854666031 0.890799949 0.839099899 0.846379412 0.923967723 0.934654737 0.946498204 300390406 fthfs uncultured bacterium Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria; 0.816993042 0.888058125 0.858187997 0.879808684 0.819033833 0.796482317 0.831561891 0.820631423 0.864135001 0.826823922 0.792118273 0.872580172 0.854440327 297204713 xylg Streptomyces sviceus ATCC 29083 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 1.292852417 1.267397517 1.296709686 1.298883419 1.301826381 1.285831056 1.3004222 1.300548832 1.276790022 1.308030096 1.28870001 1.319606016 1.279814313 1.227825102 1.274085835 1.281822835 1.28816001 1.262762088 192764446 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.836434426 0.814691529 0.806820989 0.812919783 383457684 chitinase Corallococcus coralloides DSM 2259 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Corallococcus;species:Corallococcus coralloides; 1.230449267 1.197914525 1.221089378 1.261077979 1.231753485 1.229534108 1.205928626 1.248054984 1.276998032 1.184117321 1.197506022 1.245013503 1.212655061 1.207769411 1.224783589 1.216681716 1.227336442 1.236486659 294508767 amyA Salinibacter ruber M8 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;order:Bacteroidetes Order II. Incertae sedis;family:Rhodothermaceae;genus:Salinibacter;species:Salinibacter ruber; 1.081650527 1.103739298 1.094152863 1.110011452 1.06535756 1.105174745 1.077605611 1.088742188 1.100050738 1.099125895 1.055407581 1.119170418 1.060002053 1.069020844 1.04269255 1.056874052 1.135159881 1.095516881 56476012 PRK Aromatoleum aromaticum EbN1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 1.30711027 1.309149777 1.257366292 1.245969885 1.247693893 1.311933722 1.232923505 1.249897682 1.236187854 1.255125674 1.259392922 1.253368883 1.250112342 1.256417911 1.245718305 1.260217507 1.27796707 1.273424394 74055676 FBP_aldolase Thiobacillus denitrificans ATCC 25259 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus;species:Thiobacillus denitrificans; 1.245406359 1.210441985 1.201971204 1.257452902 1.221644818 1.209819844 1.201611676 1.1972565 1.231243981 1.209229454 1.203950428 1.212815289 1.234828337 1.18414536 1.179510038 1.201128408 1.269537652 1.195661069 221532639 pcag Rhodobacteraceae bacterium KLH11 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 0.823080726 0.801851141 0.801660206 0.88679102 0.876467597 0.82902002 0.824938247 0.864312414 0.843569517 0.857566797 0.792955054 0.82649727 0.877218299 0.83401821 0.893778593 0.892242061 118029372 catb Burkholderia phymatum STM815 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 0.978818202 0.980778027 0.935836832 0.97513851 0.963094437 0.955039043 0.92099728 0.93103883 0.955738634 0.945366555 0.941587425 0.921943752 0.964189143 0.940316463 0.92443796 0.912751054 0.993131486 0.994760363 340786960 chna Collimonas fungivorans Ter331 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Collimonas;species:Collimonas fungivorans; 0.792872242 0.790719942 0.834943719 162454351 chitinase Sorangium cellulosum 'So ce 56' Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 0.979644752 0.950202983 0.9663373 0.984213627 0.975521255 0.947266405 0.986025408 0.964431759 0.971634694 0.980662723 1.002153019 0.972011018 0.977326157 0.972494326 0.892519797 0.915475983 0.983746898 0.986250273 229593194 PRI Pseudomonas fluorescens SBW25 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 0.923490517 0.972445251 0.95707829 0.950320273 0.9401354 0.944739658 0.954304801 0.941395766 0.939576798 0.961220331 0.958867714 0.955044657 0.913618622 0.897665951 0.908216737 0.883808143 0.97609326 0.950889165 209401604 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.199145381 1.181772001 1.124027877 1.18430662 1.120376836 1.177394534 1.157752281 1.161623539 1.176929794 1.148487613 1.11117933 1.181989937 1.092670097 1.09176481 1.062928317 1.114222147 1.169389021 1.180789961 148502260 mult_ring_12DiOx Sphingomonas wittichii RW1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 0.85760862 0.800597773 0.820944116 0.830518239 0.800374269 0.86322892 0.846302136 295699736 bphd Burkholderia sp. CCGE1002 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 0.821014017 0.83900214 0.816767969 0.914682298 0.827302659 0.800301154 0.787271491 0.833397538 254488468 cysI Roseobacter sp. GAI101 Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 1.190895864 1.123926426 1.072161674 1.107490451 1.111699839 1.121841517 1.099474257 1.097314694 1.120876573 1.100573354 1.099843567 1.072046676 1.056123931 1.068044597 1.031479819 1.080012679 1.120491992 1.113499828 383318591 nifh Methanocella conradii HZ254 Nitrogen Nitrogen fixation NA superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanocellales;family:Methanocellaceae;genus:Methanocella;species:Methanocella conradii; 0.794450887 0.802670517 0.818988379 0.86369795 0.807829885 0.803842082 0.876581186 0.839160826 0.83635385 381399977 one_ring_23diox Microbacterium laevaniformans OR221 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Microbacterium;species:Microbacterium laevaniformans; 0.811926507 0.81689272 0.865448284 0.825608365 0.813369651 0.832932256 0.789811136 0.878794397 0.834735999 378784200 pcag Blastococcus saxobsidens DD2 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Geodermatophilaceae;genus:Blastococcus;species:Blastococcus saxobsidens; 1.317659839 1.32195515 1.298357058 1.302068616 1.305927848 1.326318342 1.283634228 1.280436037 1.25920445 1.285327306 1.29576061 1.296025604 1.275266896 1.279618535 1.279463492 1.285332542 1.313963515 1.296365257 163740760 PRI Phaeobacter gallaeciensis 2.10 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 0.856516045 0.861225956 0.943071255 0.888889896 0.928200583 0.862244642 0.951807194 0.92781594 0.945913642 0.898162332 0.929968383 0.903201309 0.795719805 0.868659315 0.823157503 0.843814186 0.944503081 0.965362031 325673343 badh Rhodococcus equi ATCC 33707 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus equi; 0.987803035 1.021741429 0.969188188 1.071743602 0.990886019 1.013329728 0.968407257 0.98416833 0.982225269 0.983566832 0.98863347 1.006405244 0.957987074 0.973826432 0.958498692 0.97252144 1.017051124 0.98503155 333117332 alginase Pseudomonas fulva 12-X Carbon Cycling Carbon degradation Alginate superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fulva; 0.860566847 0.846213871 0.870303216 0.826331923 0.800884001 0.82351487 0.852549651 0.832322661 0.819113396 0.882208679 0.863122292 209517111 catb Burkholderia sp. H160 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 0.841760348 0.816225864 0.850604694 0.838304152 0.84933041 0.813512802 0.863157257 0.855758909 0.815709669 0.849962283 0.841375629 0.855048979 0.848657397 0.881466448 388469611 poba Pseudomonas synxantha BG33R Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas synxantha; 0.864018153 0.842192411 0.901929985 0.894531838 0.876350793 0.849369632 0.85727851 0.855990273 0.897765601 0.885820833 0.892275371 0.852462389 0.839276946 0.807925287 0.812704258 0.801528572 0.892419583 0.888657175 89941453 cellobiase Phanerochaete chrysosporium Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Corticiales;family:Corticiaceae;genus:Phanerochaete; 1.049887833 1.078983273 1.013295567 0.979619424 1.023900595 1.073199241 0.995457442 0.969865135 0.990575565 1.034252478 0.972033068 1.015144833 0.948797254 0.986469255 0.934714738 1.008626703 0.987754227 1.074057185 170741185 exaa(moxf) Methylobacterium sp. 4-46 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 1.346594416 1.309303912 1.307627728 1.305387693 1.264610562 1.317058601 1.262518537 1.291032313 1.289512562 1.299254876 1.284453202 1.303973494 1.272793726 1.289129872 1.278220242 1.29396644 1.300095246 1.304064624 291176615 p450aro Arthroderma benhamiae CBS 112371 Organic Remediation Aromatics polycyclic aromatics superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Arthrodermataceae;genus:Arthroderma;species:Arthroderma benhamiae; 1.073441822 1.077552124 1.069011583 1.050534787 1.09655134 1.091687269 1.097650857 1.057076761 1.087658469 1.096817863 1.098885358 1.072724751 1.036129249 1.036536718 1.034908132 1.045908482 1.098693986 1.117935421 295431628 vana Caulobacter segnis ATCC 21756 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter segnis; 1.014791977 0.961126101 1.014989947 1.035739952 0.988582194 0.971177595 1.033867533 1.028511941 1.011607474 0.982236324 0.908123165 0.974849855 0.926201471 0.900048123 0.856408423 0.907252206 0.982965525 0.988083544 384066511 amyA Fibrella aestuarina BUZ 2 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Fibrella;species:Fibrella aestuarina; 0.813014142 0.836215766 0.839602461 0.813447373 0.794534209 0.889003281 0.819385505 0.816360083 0.806495086 0.84685467 84393133 cysI Vibrio splendidus 12B01 Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio splendidus; 1.020236138 0.994191086 1.014445232 1.069493129 1.084103532 1.021878014 1.041580832 1.064561204 1.052404845 1.032231268 1.014696856 1.115913589 1.017737361 0.985649458 1.008285983 1.048160142 0.983444703 1.031820564 29160339 exoglucanase Botryosphaeria rhodina Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Botryosphaeriales;family:Botryosphaeriaceae;genus:Botryosphaeria; 0.821152048 0.839427526 0.774949617 0.807674478 0.816162751 0.853210312 327373658 alginase Burkholderia gladioli BSR3 Carbon Cycling Carbon degradation Alginate superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia gladioli; 0.997696082 1.028298913 1.022777851 1.033256598 1.013136566 1.019082225 1.023980435 1.002040867 1.02182108 1.02948234 1.050502451 1.041919781 0.997051203 0.98063023 0.936825972 0.98012561 1.013583817 1.050509238 119959060 xyla Mycobacterium vanbaalenii PYR-1 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 1.064174253 1.114825531 1.064478221 1.055726422 1.08821892 1.126376217 1.054234379 1.049362551 1.033010121 1.059258067 1.089112291 1.04333124 1.061123521 1.049716534 1.026491616 1.07365585 1.098667808 1.105117141 290963163 poba Streptomyces scabiei 87.22 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces scabiei; 1.069996982 1.008992706 1.004437279 1.058908499 0.980595845 1.01852279 0.997821295 1.022340392 1.084283356 1.022689974 1.00926337 1.045062841 0.985884642 1.0079091 0.992313923 1.018778928 1.044658466 0.991755089 111073739 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 0.899165472 0.988551429 0.886726898 0.965791732 0.92278749 0.943321446 0.915520916 0.965927083 0.908427528 0.969090599 0.902904325 0.924487142 0.912441922 0.911005695 0.894606718 0.944532841 0.894047644 0.936484086 300685132 ppx Corynebacterium pseudotuberculosis FRC41 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium pseudotuberculosis; 0.783649011 0.827618527 0.807670209 0.877593867 0.774521734 0.811258412 149809651 SoxB Roseobacter sp. AzwK-3b Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 0.820869358 0.947592313 0.865176081 0.953453721 0.844219004 0.957149121 0.856631844 0.883015347 0.910343483 0.949311668 0.825284668 0.906035413 0.873368567 0.886906776 0.854612801 0.885621351 0.919077721 0.958376207 8546936 endochitinase Streptomyces coelicolor A3(2) Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 1.064292162 1.06651527 1.03541427 1.095677399 1.011599262 1.040764253 1.020051847 1.028923443 1.021451347 1.026806074 0.996771792 1.031100889 1.019229634 1.027170038 0.978991359 1.017293185 1.00153256 1.055801806 186465480 CsoS1_CcmK Nostoc punctiforme PCC 73102 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc;species:Nostoc punctiforme; 0.807363194 0.772453996 359419583 amyA Gordonia araii NBRC 100433 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia araii; 1.253139236 1.215537497 1.198481804 1.227085901 1.172546479 1.218282026 1.168138859 1.204724998 1.208083753 1.194734903 1.174276427 1.219069716 1.157590652 1.181457715 1.177317579 1.200916626 1.247223597 1.207716853 218548666 nfsb_2 Escherichia fergusonii ATCC 35469 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia fergusonii; 1.047797044 1.008742377 0.998249232 1.040437537 1.016202368 1.033944766 1.051090334 1.018502135 0.971876685 0.977409623 0.993033774 1.018047457 0.952738713 0.949256266 0.924030121 0.948652526 0.995943046 1.040976425 77378595 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.821725904 0.873009171 0.839373045 0.838670917 0.811534637 0.834738847 0.903273738 270298566 fthfs uncultured rumen bacterium Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria; 0.940224649 0.925873351 0.916833071 0.936783413 0.956681007 0.952579878 0.93408869 0.908283261 0.89903087 0.907791977 0.826052829 0.87958768 0.867285127 0.847361884 0.933120942 0.862528532 0.930378333 0.946802249 21220201 cymc Streptomyces coelicolor A3(2) Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 1.14004696 1.155998598 1.107386833 1.119994008 1.116605732 1.13340418 1.128599823 1.134377906 1.131366867 1.104471481 1.109019672 1.111522822 1.071979375 1.06614118 1.038586749 1.083351448 1.124174646 1.155422249 260650544 amyA Streptomyces scabiei 87.22 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces scabiei; 1.241306225 1.234960167 1.245176274 1.185789116 1.156812244 1.252270122 1.168425435 1.174248312 1.157029339 1.176114268 1.186370562 1.160222349 1.178772661 1.184675674 1.157522016 1.183181633 1.239200737 1.222229 400229856 mhpa Burkholderia multivorans CF2 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 0.936562355 0.848358115 0.814757801 0.908343346 0.861368312 0.84604097 0.90350404 0.909649506 0.810108198 0.825259757 0.836424441 0.872259752 0.824391255 194291937 phn Cupriavidus taiwanensis Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus; 0.882512172 0.955887885 0.909953107 0.913361933 0.943337674 0.947420676 0.91902499 0.958025873 0.891182979 0.980516236 0.885777356 0.938331315 0.912463726 0.885430412 0.895308182 0.931489579 0.877440484 0.947008164 352096392 amyA Synechococcus sp. WH 8016 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 0.771889159 0.84556827 163760080 TIM Hoeflea phototrophica DFL-43 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Hoeflea;species:Hoeflea phototrophica; 0.797696959 0.880311788 0.852085706 0.856767508 0.846633032 0.819919653 0.852289915 0.813752059 0.84846449 0.930189122 0.821233308 377531513 catb Gordonia terrae NBRC 100016 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia terrae; 0.846785664 0.905642182 0.887336383 0.934876617 0.909862383 0.895910479 0.816338884 0.942646283 0.880366029 0.82940529 0.833767478 0.916365235 0.861629338 0.847226433 0.827607799 0.895848277 0.933249089 0.912005787 33520860 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.842882426 0.860069882 0.828881312 0.843467887 0.870195631 0.82763071 0.798065665 0.81811375 0.834878741 0.846424945 0.847732879 118171974 cdh Mycobacterium smegmatis str. MC2 155 Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 1.108734307 1.10474645 1.091260074 1.078591389 1.074307221 1.132784536 1.071576605 1.055855638 1.047586609 1.098606881 1.080376594 1.08177111 1.084453466 1.100387372 1.132242586 1.07998632 1.098471535 1.1185082 323366084 nifh uncultured microorganism Nitrogen Nitrogen fixation NA 0.947601301 0.878844462 0.8981078 0.926924053 0.861003977 0.854115543 0.866326171 0.870023849 0.870176666 0.86948182 0.91498955 0.897267254 0.836163056 0.895606572 0.872155578 0.899395827 0.875309239 197782088 exochitinase Streptomyces sviceus ATCC 29083 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 0.822513632 0.827860975 365265175 amyA Actinomyces sp. oral taxon 849 str. F0330 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 849; 1.009674581 0.997114358 1.020293776 0.958137986 0.920516264 0.83338461 0.894618691 0.982285738 0.95892448 0.967317499 0.887297475 0.947496845 0.905975251 0.854195727 1.011072126 0.973336552 116222524 amyA Candidatus Solibacter usitatus Ellin6076 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 0.858278861 0.813889352 0.893691911 0.908562599 0.918777315 0.90338601 0.917124703 0.907695459 0.867740462 0.872159636 0.898356873 0.924524831 0.888047762 0.882160919 0.820532502 0.850515418 0.901797025 0.880850136 17429611 limeh Ralstonia solanacearum Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 0.970947668 0.985200115 0.994546004 1.004566475 0.96204888 0.981269676 0.946042419 0.992180402 0.990129801 0.965686867 0.975953313 0.972269935 0.96310494 0.911831708 0.917824458 0.958320368 0.998834568 0.942929769 153887830 pcag Ralstonia pickettii 12D Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 0.940005653 1.011387308 0.891745444 0.944223171 0.938486559 0.877725766 0.908922066 0.923121752 0.942431296 0.933780471 0.939741468 0.917064707 0.880182776 0.91573842 0.846479991 0.858795976 0.943177659 0.953977157 302549410 xylanase Streptomyces viridochromogenes DSM 40736 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces viridochromogenes; 0.97821499 1.003085032 0.953727161 0.964761521 0.957722246 0.977048689 0.93928461 0.956089544 0.968318476 0.954298493 0.923055431 0.970505062 0.948484918 0.967674344 0.932347007 0.966985113 0.978063265 1.013616046 388485085 nhh Modestobacter marinus Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Geodermatophilaceae;genus:Modestobacter; 1.05171925 1.046441912 1.048117592 1.069675179 1.012531911 1.043514911 1.009747572 1.060381741 1.053818527 1.028219561 1.036221734 1.036071319 0.985331868 1.002318774 0.963090227 1.004709705 1.042813158 1.057414635 357560634 pula Prevotella stercorea DSM 18206 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella stercorea; 0.805783867 0.815023436 0.843312298 0.783428787 0.867105894 0.863119226 0.860741981 0.831735376 0.865193119 0.82186374 0.821105492 0.794022157 0.826108928 345865142 sqr endosymbiont of Tevnia jerichonana (vent Tica) Sulfur Sulfide Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;species:endosymbiont of Tevnia jerichonana; 0.767763415 0.802342142 0.837557415 0.833365864 0.811663089 0.814781572 334686401 amyA Microlunatus phosphovorus NM-1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Microlunatus;species:Microlunatus phosphovorus; 1.230301263 1.171411873 1.162341684 1.122647223 1.212260142 1.238191227 1.182843896 1.213199435 1.250089647 1.264318435 1.209786163 1.236480396 1.185626436 1.298745329 1.217953147 1.221507911 1.173133196 1.216242346 340526654 acetylglucosaminidase Amycolatopsis mediterranei S699 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 1.26617633 1.228803509 1.232674366 1.234137239 1.224127265 1.247557978 1.216724115 1.228577302 1.223862444 1.220942875 1.221792421 1.255873196 1.204926645 1.223149518 1.199013197 1.213622216 1.236795213 1.221081381 322420895 terc Geobacter sp. M18 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 1.027857495 1.053944546 1.003088827 1.010255401 1.027287185 1.010851631 1.018429875 1.033875129 1.002565831 1.040805475 0.981781407 1.029925465 0.994964582 0.991763571 0.906815418 0.994281735 1.014182577 1.063950314 334732945 cysJ Enterobacter aerogenes KCTC 2190 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter aerogenes; 0.849338071 0.822067024 0.883554505 0.807083541 0.910978701 0.796222378 0.843593759 0.840197011 0.899903623 162452978 napa Sorangium cellulosum 'So ce 56' Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 1.216944047 1.170409677 1.147429048 1.205685036 1.171416335 1.230075919 1.160516183 1.180054174 1.180575448 1.192130981 1.169571222 1.160238631 1.149200568 1.194553521 1.146648601 1.217551433 1.189573618 1.173084936 385883012 vgb Micromonospora lupini str. Lupac 08 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Micromonospora;species:Micromonospora lupini; 1.050345535 1.044204934 1.057400999 1.04739579 1.035814043 1.082441582 1.069652592 1.044410534 1.030088956 1.056567921 1.007809783 1.031468038 1.022353181 1.000673525 0.941988935 1.041647024 1.071272232 1.066260194 333991355 cmci Mycobacterium sp. JDM601 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 1.176592788 1.19877007 1.145700245 1.19838638 1.139807009 1.211595658 1.180709978 1.180492145 1.191013955 1.165052976 1.152048952 1.19035399 1.128821671 1.126075316 1.104244234 1.155418001 1.174176399 1.180313277 67154952 amyA Azotobacter vinelandii AvOP Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Azotobacter;species:Azotobacter vinelandii; 0.963659148 0.968025781 0.920362357 0.975704317 0.984747617 1.025297554 0.945895211 0.947571065 0.924482758 0.956737168 0.948034728 0.971980424 1.030241219 0.9324584 0.96635864 0.926183257 1.008752733 0.98127607 219541239 fthfs Chloroflexus aggregans DSM 9485 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aggregans; 0.828702642 0.912302052 0.875712753 0.792380205 0.858104498 0.845816693 0.842652157 0.859658649 0.853209552 0.794217929 0.850529179 0.813613248 0.828775163 0.863001093 300442908 fthfs delta proteobacterium NaphS2 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 1.095023458 1.00332178 1.045443047 1.064239301 1.052276176 1.056389166 1.04633114 1.01709697 1.045104087 1.081114889 1.05808649 0.984427737 1.00325878 0.980221254 0.980963463 0.992142766 1.024800235 1.026889521 145222248 arsc Mycobacterium gilvum PYR-GCK Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 1.164548066 1.164949764 1.10113029 1.140325181 1.079964577 1.147435528 1.098806626 1.102817999 1.11662698 1.146661461 1.082766892 1.122402292 1.07150325 1.100285196 1.038348888 1.097668994 1.148615007 1.169571678 145216163 tehb Mycobacterium gilvum PYR-GCK Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 1.109166622 1.122513615 1.121551948 1.108706664 1.097273455 1.149689379 1.103923331 1.105529115 1.080094593 1.139323811 1.095291245 1.10471883 1.078318547 1.148261673 1.062360444 1.099631285 1.088725009 1.139388442 374099058 urec Streptomyces hygroscopicus subsp. jinggangensis 5008 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces hygroscopicus; 0.955889655 0.966895141 0.971151704 0.960928536 0.971445589 0.974713493 0.954039874 0.938456007 0.943643837 0.907825503 0.938576688 0.942883595 0.868909018 0.895421111 0.852465031 0.946982267 0.923954448 0.913171496 329848838 acetylglucosaminidase Asticcacaulis biprosthecum C19 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis biprosthecium; 0.96325465 0.937863534 0.972949387 0.938213583 0.913131698 0.897242219 0.843706885 0.938710527 0.954427945 0.937939299 0.873592917 0.933448802 0.917434758 0.867396325 0.896988385 0.899083836 0.920440805 0.96586453 398057264 ben_bcla Burkholderia sp. BT03 virulence NA NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 1.081124112 1.098270406 1.077709197 1.051832693 1.031585816 1.05780968 0.999039575 1.046297379 1.056176996 1.045826366 1.05265645 1.067398936 1.028300859 1.047654053 0.994370404 1.038070866 1.068295444 1.100974993 89070019 alkb Oceanicola granulosus HTCC2516 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola granulosus; 1.110703509 1.212543271 1.143806161 1.096093573 1.129353144 1.146989769 1.108599809 1.019800888 1.139284448 1.121466509 1.173978034 1.08197418 1.046693593 1.105968666 1.044851026 1.103021382 1.108455829 1.143532171 78093558 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.028864506 1.048836403 1.001240967 1.063569765 1.056139367 1.023685702 0.993830063 0.976473215 1.012974496 1.018822124 1.021338023 1.032435549 1.032449092 1.048250998 1.010042536 1.014105604 1.044045636 1.002268507 157011604 aps_apra uncultured bacterium Sulfur adenylylsulfate reductase NA superkingdom:Bacteria; 0.952203554 0.920214405 0.911464017 0.985886336 0.905615763 0.904901818 0.88722225 0.944007198 0.918653445 0.938200319 0.924685652 0.961104269 0.901298627 0.907698925 0.839738979 0.910116661 0.949656742 0.923418729 291196984 exoglucanase uncultured fungus Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi; 1.050188983 1.052202065 1.040936564 1.041864687 1.043887193 1.042918492 1.036281264 1.044821257 1.028447231 1.006118511 1.024833195 1.013723573 0.952705111 1.0265476 0.932556 0.939608803 1.04718473 1.066057518 211905785 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.092029461 1.078101422 1.083737235 1.092754746 1.085446384 1.109153905 1.071298502 1.069973188 1.084254833 1.11468864 1.080758865 1.106280159 1.07748945 1.043235773 1.036633499 1.070232954 1.112336768 1.099105988 365857089 xylanase Acetobacteraceae bacterium AT-5844 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae; 0.896546361 0.916109242 0.911364528 0.970542432 0.873284528 0.898333427 0.887567046 0.945355583 0.92766845 0.896619284 0.86710839 0.922629266 0.838486137 0.895101097 0.850738274 0.894114705 0.891416101 0.897106181 46409008 alginase Sphingomonas sp. A1 Carbon Cycling Carbon degradation Alginate superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 0.993782362 1.017508071 0.979538282 1.007943742 0.949425477 0.998416224 1.014836934 0.976617681 0.990040016 0.982512187 0.976677591 0.99902951 0.880990249 0.970463726 0.860184922 0.879394614 0.948174911 1.003444355 271969912 amyA Streptosporangium roseum DSM 43021 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 1.093536145 1.093430933 1.087193867 1.094766023 1.077195663 1.100119895 1.066937737 1.043786211 1.082411903 1.055556699 1.058428561 1.061230879 1.052159212 1.048399422 1.039155197 1.022972425 1.100043962 1.073347362 386386790 amyA Streptomyces tsukubaensis NRRL18488 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces tsukubaensis; 1.257697617 1.2240455 1.196027061 1.237614664 1.20853425 1.233670069 1.19198905 1.206441999 1.215598098 1.190661136 1.196332426 1.217243285 1.188613789 1.197474111 1.189876591 1.218558333 1.238167506 1.196395116 325979740 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.857857463 0.879900157 0.838622709 0.888560258 0.842564555 0.918228202 0.853231627 0.875053987 0.864992473 0.858121939 0.841516195 0.831044064 0.855566477 0.847483593 0.903831675 0.949343476 284989771 amyA Geodermatophilus obscurus DSM 43160 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Geodermatophilaceae;genus:Geodermatophilus;species:Geodermatophilus obscurus; 0.838991604 0.895216581 0.872602525 0.862435365 0.901380284 0.859541045 0.915863331 0.924402976 0.875063144 0.860116449 0.853827522 0.859774584 0.888137394 0.815994379 0.807513264 0.817672411 0.853744411 0.912314873 291338181 amyA Streptomyces ghanaensis ATCC 14672 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces ghanaensis; 0.89473327 0.939041346 0.896028759 0.891965335 0.898347698 0.898495999 0.904028828 0.936340443 0.895324979 0.951565962 0.983538782 0.901132583 0.916996904 0.906747219 0.871881559 0.862629331 0.898103203 0.94568944 292674900 nira Sphingobium japonicum UT26S Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium;species:Sphingobium japonicum; 0.945531178 0.920177597 0.89998431 0.934245746 0.913333404 0.944534148 0.909848765 0.931919569 0.950336672 0.938968073 0.892114587 0.980142934 0.860538363 0.883858052 0.877381178 0.94139802 0.953779044 0.955604635 328906815 amyA Propionibacterium humerusii P08 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium;species:Propionibacterium humerusii; 0.895500165 0.892629814 0.874574413 0.851795677 0.888227123 0.886896227 0.838670656 0.860034496 0.887722513 0.907305676 0.89535883 0.883694943 0.813602542 0.868445541 0.826459268 0.834437777 0.87849528 0.933046434 114763537 urec Roseovarius sp. HTCC2601 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pelagibaca;species:Pelagibaca bermudensis; 1.112737381 1.109470343 1.110106737 1.153061203 1.076182293 1.049548825 1.084543256 1.096862668 1.123590554 1.111921827 1.089402775 1.131309946 1.066778518 1.051233613 1.016308009 1.044391785 1.11617822 1.094024639 377521741 catb Gordonia otitidis NBRC 100426 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia otitidis; 0.967516567 0.84138636 0.990806094 1.043448228 0.881994646 0.818609945 0.891677678 0.866630891 0.842938365 0.858419861 0.887767472 0.883852508 91697716 soxY Polaromonas sp. JS666 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 1.0407734 0.933220428 0.88046925 0.984793408 0.903133182 0.91428646 0.988772601 0.971154332 0.926602671 0.918388874 0.900299493 0.954682282 0.88165172 0.938845454 0.905514331 0.946772117 0.922519001 0.923776231 158332930 chitinase Azorhizobium caulinodans ORS 571 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Azorhizobium;species:Azorhizobium caulinodans; 0.831816902 0.80530052 0.838192764 0.861134653 0.87217115 0.843595522 0.854912074 0.811560524 0.820063039 0.903838289 0.935191665 0.883535252 0.813194516 0.829179848 0.868552706 0.856502024 0.878933723 308433482 terc Dermacoccus sp. Ellin185 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dermacoccaceae;genus:Dermacoccus; 0.998624962 0.996617254 0.972555615 0.966042852 0.8817231 0.954523396 0.948479149 0.96658226 0.960786242 0.985646169 0.948049187 0.958116773 0.8855515 0.928997446 0.880418044 0.924767896 0.976360053 1.026602873 374609195 rubisco Mycobacterium tusciae JS617 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tusciae; 0.958324386 1.025797008 0.938551866 0.978455149 0.905030288 0.992497419 0.942637778 0.858306487 0.892154117 0.924052788 0.922821547 0.901727125 0.992028262 0.954255741 0.950641189 0.904355815 0.985301816 0.942869462 146762529 actin_Stramenopiles Nitzschia closterium f. minutissima Other Phylogenetic NA superkingdom:Eukaryota;phylum:Bacillariophyta;class:Bacillariophyceae;family:Bacillariaceae;genus:Nitzschia;species:Nitzschia closterium; 0.799903519 0.837469132 0.832219986 0.812159894 0.789462171 0.813919398 0.840250418 0.816644289 0.822352423 0.843385903 0.84024662 15965451 tktA Sinorhizobium meliloti 1021 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium meliloti; 0.830290579 0.851529009 0.869284157 0.842422248 0.820958937 0.838526336 0.81945745 0.873034672 0.859691364 189421715 ben_bcla Geobacter lovleyi SZ virulence NA NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter lovleyi; 0.804554858 0.806161367 0.805324093 0.811253216 0.797529589 0.827151619 158331529 terc Azorhizobium caulinodans ORS 571 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Azorhizobium;species:Azorhizobium caulinodans; 1.198511315 1.137921641 1.168914641 1.178587373 1.135110797 1.176410822 1.114801101 1.157176495 1.157323121 1.141589404 1.152911748 1.178226185 1.149433114 1.134245571 1.12166811 1.165327175 1.176873095 1.123673097 380683424 GAPDH_Calvin Phaeospirillum molischianum DSM 120 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Phaeospirillum;species:Phaeospirillum molischianum; 0.799963749 0.808436298 0.808947128 0.825903208 0.796129704 0.811351834 0.816167851 84778383 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.854927458 0.906499866 0.900083173 0.891164525 0.894806695 0.899325183 0.866013952 0.900139383 0.909740836 1.068577965 0.940423238 0.859296805 0.873977236 0.836767285 0.884443079 0.894001121 0.908137663 340772028 amyA Propionibacterium acnes SK182B-JCVI Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium;species:Propionibacterium acnes; 1.038355475 1.043416563 1.090828146 1.037967405 0.995352385 1.049863699 0.988424866 1.046899849 1.023893507 1.024185345 1.014445998 1.005960625 1.008710826 1.029873859 1.001361926 1.034342048 1.063579181 1.045762951 359312927 bphF1 Gordonia polyisoprenivorans NBRC 16320 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia polyisoprenivorans; 0.963348113 1.012238582 0.976897269 0.947343705 0.899158969 0.940564825 0.924813199 0.903033868 0.957055127 0.945152086 0.931502346 0.940050736 0.872913946 0.889735746 0.830876189 0.900936505 0.970383787 1.010624396 338810437 atza Acetonema longum DSM 6540 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Acetonema;species:Acetonema longum; 1.118140054 1.145451152 1.106345656 1.093729666 1.136241954 1.114710437 1.14061393 1.069907203 1.092889294 1.094240703 1.113445388 1.158591749 1.078335494 1.081151781 1.053054785 1.085001027 1.063832333 1.101250221 60476259 dsrB uncultured bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.04018901 1.0233839 0.930303644 1.022814378 0.988181573 1.013299378 0.983341663 0.982886205 1.012530761 0.982379677 0.972500563 1.008623421 0.978012034 0.945466887 0.955275825 0.984163142 1.043120356 1.051680545 371459039 mdlc Acetobacter pasteurianus NBRC 101655 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acetobacter;species:Acetobacter pasteurianus; 1.305045386 1.288118282 1.283664334 1.304920613 1.28997108 1.313145313 1.278785952 1.295176397 1.303230519 1.283730294 1.302865991 1.305228684 1.252305919 1.256555794 1.223736614 1.260267177 1.309104528 1.294090533 374423417 xylj Bradyrhizobium sp. WSM471 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 1.050570391 1.049831011 1.052727032 1.093891068 1.045956216 1.072837632 1.057182022 1.060533919 1.073816219 1.03770736 1.050067607 1.061757608 1.041517124 1.040159208 1.055907313 1.044646654 1.070365192 1.058582116 16126636 mdld Caulobacter crescentus CB15 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter vibrioides; 0.939109935 0.947530214 0.971040468 0.965567318 0.949141722 0.945777296 0.958740984 0.955220069 0.978914838 0.937164705 0.91711115 0.972846942 0.913715766 0.903898404 0.897663237 0.888631648 0.901205203 0.945986603 164455538 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 1.363851995 1.335474907 1.320550836 1.345368185 1.301845819 1.34188638 1.311490439 1.274809511 1.335584157 1.339789039 1.331483306 1.345954873 1.299740652 1.266748528 1.270425806 1.286272917 1.349185253 1.283800547 392120765 mhpa Mycobacterium abscessus 6G-0125-S Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium abscessus; 1.157118458 1.076354493 1.061038425 1.088102566 1.046832664 1.120148092 1.031023048 1.045160918 1.081599608 1.060695821 1.069285039 1.084658357 1.052118211 1.067659668 1.069413072 1.069808595 1.125035669 1.061954499 258404301 acetylglucosaminidase Desulfohalobium retbaense DSM 5692 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfohalobiaceae;genus:Desulfohalobium;species:Desulfohalobium retbaense; 1.490314596 1.471116697 1.466762631 1.451240418 1.427251654 1.466194021 1.428397488 1.454376244 1.450861603 1.464598872 1.444593328 1.472782685 1.401432006 1.422636589 1.417516757 1.446697961 1.458929174 1.466800305 363714261 nhh Acetobacteraceae bacterium AT-5844 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae; 1.00615637 0.99068977 1.021654375 1.026011206 1.060120106 1.0655715 1.082253432 1.063024431 1.03427461 1.046655966 1.036604189 1.033128945 1.034044574 1.041021284 1.001202745 1.031953028 1.058222606 1.010628353 49612946 trze Erwinia carotovora subsp. atroseptica SCRI1043 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium atrosepticum; 1.090091398 1.09301022 1.078041909 1.077516103 1.069352254 1.068653907 1.050900867 1.047616916 1.056046516 1.066022551 1.039924099 1.060272441 1.073680508 1.021781011 1.016956717 1.021798457 1.107829831 1.04170557 390120621 ppx Opitutaceae bacterium TAV1 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 1.200115979 1.185956247 1.199550576 1.184530776 1.211848487 1.249904459 1.191683892 1.206793664 1.18252263 1.172578236 1.19866376 1.208427299 1.16940807 1.147625992 1.147107757 1.160853201 1.18430644 1.160431886 26278888 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.057448375 1.038313911 1.014372583 1.01776116 0.985819316 1.023035902 1.001378323 1.025931346 1.023789545 1.026180859 0.987326534 1.004568778 0.986565507 0.996329961 0.942476894 1.018219624 1.032315616 1.054280622 4406507 nagg Pseudomonas aeruginosa Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.836132188 0.867347404 0.824930621 0.88149707 0.860110025 0.860513066 0.820331499 0.847013924 0.814593597 0.812914959 0.838840384 0.898867071 0.907145023 381203053 catb Sphingobium yanoikuyae XLDN2-5 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium;species:Sphingobium yanoikuyae; 0.924603416 0.929180604 0.859040385 0.926151821 0.933185362 0.941699113 0.903122939 0.863431158 0.870776846 0.90630437 0.871947389 0.869326526 0.874901179 0.855627587 0.832296867 0.871072508 0.926564389 0.945746629 197713857 ppx Streptomyces sviceus ATCC 29083 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 1.056175582 1.005952963 1.057982162 1.093392569 1.096120047 1.038921374 1.093431583 1.07784901 1.037989394 1.069929546 1.049486475 1.089219748 1.044382053 1.024769546 1.150387794 1.085938599 1.0069261 1.050307398 379988859 dsrB uncultured bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.159699219 1.080197101 1.139643751 1.131420148 1.085993624 1.146104643 1.071253729 1.074165834 1.127540207 1.119846597 1.118641289 1.09366595 1.112979575 1.106274016 1.071251239 1.078974455 1.144661289 1.115724914 260427271 tktA Citreicella sp. SE45 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Citreicella; 0.841417043 0.856108365 0.851402965 0.846025014 0.81116425 0.813065825 0.832569447 0.858135009 0.848002781 0.853416849 0.822091849 0.830840407 0.843405851 0.843500641 0.886863971 0.86965064 255292322 bphc uncultured bacterium Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria; 0.816663849 0.82093575 37200443 amyA Vibrio vulnificus YJ016 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio vulnificus; 0.89319883 0.85722464 0.862305599 0.839550806 0.814241763 0.875846217 0.892575172 0.838815534 0.844517988 0.841595922 0.868072403 0.85587807 0.868009952 0.85230335 293189363 amyA Actinomyces odontolyticus F0309 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces odontolyticus; 1.369292825 1.326569951 1.321003374 1.31328741 1.303597109 1.334275305 1.30844877 1.317832594 1.349645534 1.306683462 1.299531127 1.332733465 1.276692205 1.277475898 1.270336715 1.284658838 1.372517935 1.320638075 229565886 amyA Beutenbergia cavernae DSM 12333 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Beutenbergiaceae;genus:Beutenbergia;species:Beutenbergia cavernae; 0.789880382 0.831582967 0.83669009 0.848519974 0.895276249 0.817322409 0.81763874 0.828537006 0.808031325 0.864814951 0.925727076 0.902845178 0.826165822 0.897217031 302520995 xylg Streptomyces sp. SPB78 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 1.213429797 1.171007627 1.146888634 1.214914102 1.162704149 1.181880957 1.150561929 1.15916622 1.198763788 1.17166797 1.156722346 1.177229428 1.142185452 1.138641751 1.124787489 1.150877747 1.196333177 1.160967163 260631137 atza Jonquetella anthropi E3_33 E1 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Synergistetes;class:Synergistia;order:Synergistales;family:Synergistaceae;genus:Jonquetella;species:Jonquetella anthropi; 1.068695356 1.068006825 1.036047918 1.090541489 1.004508028 1.072339878 0.978897151 1.053041924 1.113766554 1.053732083 0.971963314 1.032513897 1.043762887 1.017900073 0.967132781 1.029723909 1.034919078 1.031851561 322434098 amyA Granulicella tundricola MP5ACTX9 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Granulicella;species:Granulicella tundricola; 0.89063544 0.923297938 0.845474242 0.89331183 0.86574674 0.881412161 0.827454247 0.828544774 0.853158153 0.856827034 0.867632129 0.832324881 0.814888675 0.870394306 0.84819995 0.867130995 0.888435327 309299208 mannanase Puccinia graminis f. sp. tritici CRL 75-36-700-3 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;order:Pucciniales;family:Pucciniaceae;genus:Puccinia;species:Puccinia graminis; 1.260536317 1.268509921 1.212660883 1.233006186 1.248601625 1.28107549 1.264487653 1.238355323 1.227004833 1.284779149 1.248599415 1.236961773 1.234976439 1.265569248 1.215816499 1.250395421 1.234188369 1.259162071 67525701 amyA Aspergillus nidulans FGSC A4 Carbon Cycling Carbon degradation Starch superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 0.882530996 0.892016966 0.918302263 0.816564493 0.943031755 0.839827874 0.889218502 0.860304902 0.892201998 0.82073825 0.85135565 0.903500807 0.894979964 0.935480912 0.855067872 335424720 nosz Salinisphaera shabanensis E1L3A Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Salinisphaerales;family:Salinisphaeraceae;genus:Salinisphaera;species:Salinisphaera shabanensis; 0.825995046 0.799782935 0.821216887 0.807560483 0.79320481 0.83146932 0.802914841 0.839048654 255954671 amyA Penicillium chrysogenum Wisconsin 54-1255 Carbon Cycling Carbon degradation Starch superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 1.10741365 1.152592316 1.095700152 1.09251449 1.123999329 1.134601633 1.170653595 1.106129024 1.106646263 1.139867802 1.120568171 1.14342678 1.152245524 1.110438475 1.094782016 1.165383679 1.107198141 1.121150263 297592219 dsra uncultured bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.00059613 1.029156694 1.043988129 1.098970939 1.058543144 0.992904824 1.096223157 1.023930778 1.113768185 1.013832448 1.017525259 1.051800409 1.037249434 0.973961756 1.056178308 1.00606417 1.053085979 0.999276686 39649554 nifh Rhodopseudomonas palustris CGA009 Nitrogen Nitrogen fixation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 0.905367388 0.944481875 0.929816291 0.923858251 0.932384117 0.940409466 0.947953124 0.901100437 0.922469068 0.941596615 0.89122 0.917467742 0.892911526 0.89299693 0.905372123 0.937139073 0.960235789 227548770 amyA Corynebacterium lipophiloflavum DSM 44291 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium lipophiloflavum; 1.226254065 1.194206532 1.158545322 1.228915313 1.145035037 1.202743645 1.17986868 1.207716113 1.199111562 1.16373308 1.139761032 1.179924591 1.141021542 1.115591899 1.132202462 1.157979037 1.213811422 1.172326861 357028537 TIM Mesorhizobium amorphae CCNWGS0123 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium amorphae; 1.18137693 1.18360689 1.144574066 1.180929891 1.128223628 1.18132948 1.144901893 1.181960842 1.177593365 1.139417648 1.125522159 1.158365652 1.120325123 1.117058991 1.08644101 1.138577434 1.175209294 1.162237182 75993821 arra uncultured bacterium Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 1.017215813 1.067936448 1.062283344 0.997101847 0.994863369 1.057561559 1.008042684 0.985765161 0.964697273 1.038756738 1.027213235 0.999710297 1.010728197 1.051346179 1.019535942 0.973538288 1.021424098 1.055756473 163962154 chitinase Vibrio sp. 12F04 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 0.910605605 0.950264254 0.941486219 0.894316793 0.827332778 0.892830362 0.846864357 0.896930612 0.936712245 0.910993767 0.874803467 0.93701742 0.874921122 0.850849847 0.837991339 0.872511511 0.952075944 0.937716497 46200009 fthfs Thermus thermophilus HB27 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus;species:Thermus thermophilus; 0.836453748 0.889882727 0.823445922 0.934240429 0.80701624 0.881329171 0.898140122 0.897324994 0.908566213 0.835368272 0.928706065 0.791350544 0.810530888 0.798143671 0.806645128 0.862403395 0.904278494 375054882 alginase Rhizobium sp. PDO-076 Carbon Cycling Carbon degradation Alginate superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 0.835737964 0.891034947 0.888380187 0.931626144 0.856557802 0.934731975 0.928339564 0.94230879 0.867661771 0.850370101 0.816412069 0.893905113 0.857563619 0.841389582 83859811 tktA Oceanicaulis alexandrii HTCC2633 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Oceanicaulis; 0.818480461 0.870229243 0.821252892 0.864393655 0.826439805 0.940305961 0.832170867 0.898804394 0.862653849 0.939172054 0.899537081 0.932139269 0.828615128 0.902331798 0.849484295 0.885429114 0.890225218 0.897071183 357383169 catechol Pelagibacterium halotolerans B2 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Pelagibacterium;species:Pelagibacterium halotolerans; 0.875653233 0.888115324 0.895877667 0.944428492 0.905142058 0.892497523 0.918574857 0.884154538 0.880001414 0.909220525 0.865779395 0.92691194 0.889330711 0.886165614 0.869339373 346993862 ppx Ruegeria sp. TW15 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 0.968546194 0.938411389 0.909145874 0.922440787 0.920028941 0.843323716 0.931506018 0.931426578 0.95137328 0.874369912 0.934940286 0.961440891 0.851566375 0.820542258 0.861819045 0.852494499 0.908069747 0.940432143 89081924 arylest Oceanospirillum sp. MED92 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Neptuniibacter; 0.782254286 0.78821177 0.806218653 0.794427497 0.802457987 126174562 glucoamylase Shewanella baltica OS155 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella baltica; 0.880175231 0.909262224 0.926141372 0.883650109 0.921878454 0.868257816 0.908009256 0.943373217 0.87429103 0.859754434 0.864755056 0.863919172 0.83097941 0.814808627 0.875559004 0.909166845 26278774 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.991576768 0.95266041 0.99633125 1.023613437 0.955360677 0.989012602 0.983534102 0.96093888 1.033230078 0.980414231 1.002927859 0.96700378 0.971706294 0.958016908 0.963952922 0.922669591 1.004459787 0.985724442 85105950 nitrate_reductase Neurospora crassa OR74A Nitrogen N Assimilation NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Neurospora;species:Neurospora crassa; 1.210950896 1.199171711 1.182925548 1.190044805 1.170859045 1.196213415 1.157283717 1.164606515 1.163203616 1.150460414 1.161345013 1.154781324 1.149768777 1.134067883 1.1641824 1.173276686 1.200137066 1.190827534 89349230 merb Xanthobacter autotrophicus Py2 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 0.932864037 1.107732385 0.930110835 0.912427119 0.94747656 0.904325242 0.951161316 0.917159838 0.947999943 0.964727981 0.982716454 0.956538723 0.900589292 0.863902824 0.867246072 0.858917656 0.981211676 0.981603087 329849061 amyA Asticcacaulis biprosthecum C19 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis biprosthecium; 0.941239353 0.856526726 0.876105612 0.864385244 0.811432747 0.962897022 0.833871475 0.868922659 0.880987264 0.828951897 0.857429256 0.829158484 0.837331611 0.82112363 0.830874034 0.921742453 0.887517274 116621376 CsoS1_CcmK Candidatus Solibacter usitatus Ellin6076 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 0.878188215 0.843266312 0.861219686 0.845366588 0.813236418 0.851350768 166835917 mannanase Streptomyces sp. s6-204 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 1.171167796 1.221086869 1.146777675 1.065613227 1.091300238 1.18754889 1.050363938 1.090363004 1.087436011 1.094365257 1.163412539 1.122230928 1.155655623 1.087528607 1.137525316 1.120857484 1.224376025 1.128464671 170721876 catechol Pseudomonas putida W619 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 1.257933456 1.260730136 1.23241289 1.21240072 1.234091533 1.285081432 1.192771431 1.189071567 1.165936614 1.209651105 1.223685429 1.193004756 1.216917887 1.210817058 1.212191338 1.190683741 1.250547683 1.243662796 296128499 xylanase Cellulomonas flavigena DSM 20109 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas;species:Cellulomonas flavigena; 1.018543912 1.081929757 1.038175572 1.0614774 1.067927248 1.262923449 1.061689333 1.051317106 1.05745732 1.084355841 1.074877702 1.058342755 1.085382248 1.088762532 1.049998278 1.043596651 1.069571473 1.068550838 39935326 arsc Rhodopseudomonas palustris CGA009 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 0.964049959 0.963824744 0.971825123 0.968445436 0.993506522 0.96652444 0.898958453 0.94128227 0.917535587 0.96545085 0.977962742 0.982566146 0.936457801 0.911907983 0.916199358 0.9592849 0.965390945 0.928414537 46810965 one_ring_23diox uncultured soil bacterium Organic Remediation Aromatics Other aromatics superkingdom:Bacteria; 0.859259359 0.807305867 0.868079937 0.845265241 0.849132679 0.849221128 0.798557361 0.835619549 0.835970017 0.780240446 0.816777013 0.789143872 0.858137801 0.866902772 89345149 mer Rhodoferax ferrireducens DSM 15236 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Albidiferax;species:Albidiferax ferrireducens; 1.003298583 0.983330569 0.995361237 1.001585141 0.984878293 1.002907077 0.993469778 0.991028709 0.984193645 0.947066866 0.984725785 0.959654634 0.964762162 0.91850035 0.910526018 0.925053603 0.995039022 0.960510745 126704824 PRI Rhodobacterales bacterium HTCC2150 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 0.937068566 0.900517885 0.914635893 0.980833257 0.877030738 0.941335745 0.90619631 0.94202145 0.942505169 0.939051612 0.905014704 0.954168722 0.935220893 0.896386312 0.910727797 0.926219655 1.009286749 0.938887059 373223168 amyA Odoribacter laneus YIT 12061 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Odoribacter;species:Odoribacter laneus; 0.879791763 0.867871336 0.84934902 0.878904999 0.828829437 0.813712752 0.801164042 0.793319956 0.858537679 0.82173863 379067422 alkb uncultured bacterium Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria; 0.847234612 0.783540874 0.840586785 0.843875111 0.86630678 0.876019447 0.882962307 0.889978769 0.836303072 0.839328991 0.849305895 0.835824676 0.871757205 334730090 soxY Ramlibacter tataouinensis TTB310 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Ramlibacter;species:Ramlibacter tataouinensis; 1.0476509 1.031651285 1.026327105 1.060135444 1.03641014 1.000855843 1.026752752 1.037060195 1.069799578 1.04959232 1.062679152 1.054812063 0.985695694 0.985598293 0.954680187 0.969927638 1.062660517 1.014561122 35212663 CsoS1_CcmK Gloeobacter violaceus PCC 7421 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Cyanobacteria;class:Gloeobacteria;order:Gloeobacterales;genus:Gloeobacter;species:Gloeobacter violaceus; 1.136554933 1.124172667 1.148360763 1.161786402 1.135954171 1.139903015 1.147601179 1.147267371 1.120487231 1.119580443 1.136732635 1.113921584 1.086085345 1.066183569 1.074503988 1.075747492 1.113503918 1.140977009 211905493 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.914929617 0.935835302 0.805363235 0.909203166 0.888751461 0.887577449 0.922712985 0.935953476 0.91453833 0.855560837 0.882290391 0.887388387 0.833338246 0.77741043 0.885929309 0.868356269 145235525 tannase_Cdeg Aspergillus niger Carbon Cycling Carbon degradation Tannins superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 0.990682332 0.938694376 0.912478531 0.971270678 0.945597775 0.972224408 0.967199634 1.010090958 0.994394757 0.936997498 0.966824096 0.951634229 0.950340633 0.928634811 0.915714689 0.917319167 0.97879233 0.938638963 88863099 ppx Jannaschia sp. CCS1 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Jannaschia; 1.002186105 1.001383997 1.027456148 1.061686476 1.059882829 1.196607858 1.055105949 1.035909035 1.041814573 1.104319827 1.054584983 1.046538516 1.010081956 1.061502522 0.995063725 1.020104215 1.001526017 1.001096427 326775856 amyA Streptomyces griseus XylebKG-1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseus; 1.485438241 1.426592684 1.422492637 1.429850275 1.406616301 1.442367618 1.399768225 1.406800954 1.409481221 1.395075416 1.410317347 1.430969372 1.402083165 1.383615465 1.406515376 1.426572282 1.444688578 1.39602191 302693623 chitin_deacetylase_fungi Schizophyllum commune H4-8 Carbon Cycling Carbon degradation Chitin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 0.784005195 0.789797877 0.806934027 0.806227191 0.793072515 0.871984488 296117754 poba Corynebacterium ammoniagenes DSM 20306 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium ammoniagenes; 1.035334689 0.997356594 1.022361591 1.043373645 1.04788291 0.998394094 1.01557054 1.004527176 1.03407686 1.019526382 1.038810744 1.051609278 0.955714987 0.941531476 0.932535426 0.996433316 1.013120778 0.947301763 111024870 xylj Rhodococcus sp. RHA1 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 1.547061665 1.529050483 1.504666847 1.499574364 1.486598798 1.549975485 1.485043408 1.48786823 1.477730534 1.499089132 1.483762903 1.497603605 1.451544436 1.462417904 1.426617158 1.479152115 1.502349818 1.494217118 293396595 nitro Serratia odorifera DSM 4582 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia odorifera; 1.045873425 1.002983213 1.004605999 1.021042079 0.998876588 0.990678887 1.008708019 1.000915143 1.0143059 0.987159212 0.996237678 0.981331584 0.946909094 0.937111646 0.975972599 0.945910378 1.024518569 0.986722204 86139498 cmci Roseobacter sp. MED193 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 1.106884432 1.066631546 1.104928021 1.088090524 1.074777055 1.116589838 1.100971812 1.109009387 1.083379952 1.071320062 1.018149735 1.050881288 1.044731141 1.005466854 1.034528077 1.006989526 1.107108234 1.092434304 380692198 mcra Methanofollis ethanolicus Carbon Cycling Methane Methanogenesis superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;family:Methanomicrobiaceae;genus:Methanofollis; 0.893315563 1.087995414 0.909682662 0.948684765 0.84715901 0.892039308 0.908008312 0.906983859 0.901261454 0.901944261 0.890844908 0.908945212 0.843348457 0.913855013 0.839879824 0.823857489 0.916563259 0.920478749 77458530 xyla Pseudomonas fluorescens PfO-1 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 1.014831242 0.992892748 1.035628454 1.021324238 0.931249518 0.940795854 0.931412534 0.931884325 0.991192407 0.976835717 0.975253798 0.987810847 0.956703091 0.955700839 0.915153487 0.937220419 0.99891598 0.980899584 358753230 RgaE Granulicella mallensis MP5ACTX8 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Granulicella;species:Granulicella mallensis; 1.142047327 1.124438584 1.133794366 1.113606316 1.140229961 1.14914849 1.142702846 1.107900393 1.122875704 1.082425897 1.141707192 1.064541323 1.05959212 1.047725353 1.106435294 1.12824632 52355303 silaffin Thalassiosira pseudonana Metal Homeostasis Silicon Biosynthesis superkingdom:Eukaryota;phylum:Bacillariophyta;class:Coscinodiscophyceae;family:Thalassiosiraceae;genus:Thalassiosira; 0.881131384 0.87330737 0.870740453 0.892352315 0.849755805 0.903501893 0.87520245 0.815942053 0.85368491 0.902262025 0.903012535 0.826430957 0.867854597 0.856840808 0.866605866 0.875321065 0.897458579 145304916 amyA Salinispora tropica CNB-440 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora tropica; 0.917608837 0.99318345 0.97308014 0.896979956 0.999627728 1.046268129 0.957048286 0.898899027 0.869948407 1.024983067 1.016193843 0.947676402 0.981705099 1.055015447 1.001628506 0.976238481 0.97107961 1.009786122 68536269 gdh Corynebacterium jeikeium K411 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium jeikeium; 0.767427628 0.944549607 0.828702452 0.815286571 0.80449633 0.828999713 0.798802776 253778198 amyA Ruegeria sp. TM1040 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 0.840858011 0.861840401 0.807396763 0.85378405 0.83552303 0.81586134 0.82548581 0.813727132 0.839212787 0.857906121 0.823795457 0.86691089 0.873782084 349780334 TIM Thioalkalivibrio thiocyanoxidans ARh 4 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio;species:Thioalkalivibrio thiocyanoxidans; 1.151596521 1.130003673 1.111971328 1.13135032 1.110918219 1.142166641 1.120424196 1.117290544 1.124811156 1.101217565 1.116905033 1.127896919 1.090439062 1.076847544 1.100002158 1.127684484 1.188570362 1.097813815 300780094 amyA Corynebacterium genitalium ATCC 33030 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium genitalium; 0.876025543 0.824679867 0.843836688 0.852952018 0.811849504 0.836040581 0.801321801 0.791975213 0.900352253 0.866741081 161165886 tfdb Sorangium cellulosum 'So ce 56' Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 1.088775544 1.147467397 1.067881105 1.153667564 1.119859324 1.151716062 1.13298471 1.152541977 1.12512449 1.14348878 1.115692652 1.165652087 1.112280398 1.109432924 1.134962411 1.1366358 1.095801195 1.116556115 349686830 nfsa_2 Gluconacetobacter oboediens 174Bp2 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter oboediens; 1.007730903 0.922057624 0.998828414 1.000266358 0.979984497 0.894542168 0.91621466 0.926109189 1.027743631 0.935566013 0.956663091 0.94909206 0.938695465 0.875142242 0.866255787 0.930554122 1.011416758 0.931370395 160362624 arsc Delftia acidovorans SPH-1 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 0.999470129 0.993762925 0.927875007 0.916043748 0.952161656 0.973234348 0.970698438 0.954764018 0.844035211 0.898335938 0.955195656 0.906826608 0.863874898 0.918107922 0.88207879 0.835362258 0.901589032 0.963290778 270511987 chitinase Streptosporangium roseum DSM 43021 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 0.809768486 0.88638564 0.842723958 0.847952286 0.816680339 0.904585667 0.849000752 0.86079912 0.846127527 0.867823971 0.83801423 0.839538135 0.837573048 0.838455612 0.848015578 0.856710865 0.888840491 121495568 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.181674033 1.194006756 1.140987103 1.1491476 1.162747863 1.196959015 1.130115064 1.148451217 1.14601676 1.15815633 1.159631093 1.160768132 1.141418467 1.144099865 1.131664571 1.148604473 1.182779158 1.179861413 358639812 GAPDH_Calvin Azoarcus sp. KH32C Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 0.862143437 0.845042741 0.873364125 0.888211382 0.793441418 0.877974746 0.865172617 330469216 rgl Verrucosispora maris AB-18-032 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Verrucosispora;species:Verrucosispora maris; 1.226297069 1.242989636 1.217249051 1.226931868 1.210717637 1.245027538 1.214200858 1.208262143 1.188589472 1.207461733 1.229889076 1.184606392 1.167282121 1.168398839 1.150692696 1.142658117 1.15297474 1.21089393 407898926 dehh Acidovorax sp. KKS102 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 0.92325694 0.96311981 0.930843367 0.912289892 0.89627137 0.957233445 0.910326424 0.878592596 0.865164243 0.857982818 0.867600665 0.912700652 0.845450437 0.896212547 0.866150465 0.906886733 0.954020939 0.919131698 326696726 PRI Acetobacter pomorum DM001 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acetobacter;species:Acetobacter pomorum; 0.931138014 0.95994973 0.983887243 0.973090028 0.939947501 0.936567572 0.930287223 0.943254727 0.95403318 1.009465679 0.943869065 0.956758254 0.91275736 0.963489025 0.921568352 0.938560378 0.927151719 0.971053757 150006434 xyla Bacteroides vulgatus ATCC 8482 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides vulgatus; 1.190628533 1.257704255 1.180368655 1.244990811 1.208772701 1.230817577 1.154309189 1.204736009 1.195956201 1.230070199 1.146069074 1.224279016 1.160492434 1.198003693 1.144638171 1.197555864 1.232029178 1.233134342 384091576 amyA Paenibacillus mucilaginosus K02 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 1.020660092 0.999448313 0.961297249 1.022387525 0.937298126 1.007275785 0.972778105 1.003157649 1.019231441 1.001412897 0.957788702 1.005737532 0.960225613 0.948033212 0.967401711 0.983076426 1.004155798 0.988885636 256690899 glucoamylase Halorhabdus utahensis DSM 12940 Carbon Cycling Carbon degradation Starch superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halorhabdus;species:Halorhabdus utahensis; 0.786706813 0.798388441 0.815519618 0.851766308 0.871470426 0.808055484 0.829427396 0.876535502 0.808895799 0.81062364 0.805459016 114150714 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.078794463 0.996292089 1.028545561 1.039954279 0.971075747 0.998494846 0.956930133 0.98350874 1.032002467 0.955155268 1.009678827 0.992492682 0.95600047 0.970408181 0.914699215 0.948668951 1.054378715 1.0173408 192764468 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.129807773 1.108436858 1.050253739 1.051329556 1.079348789 1.038847269 1.051586147 1.090082157 1.094800322 0.979340925 1.041632032 1.056656256 1.050967523 1.002228903 0.976848509 1.041910244 1.066068552 1.090946797 328846666 B_lactamase_A Brevundimonas diminuta ATCC 11568 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Brevundimonas;species:Brevundimonas diminuta; 0.90354368 0.994800073 0.874912875 0.939744553 0.921554405 0.986973932 0.889277133 0.895339207 0.945106054 0.940163165 0.868404888 0.905159731 0.866566014 0.913919762 0.883074689 0.898495036 0.944147438 0.990986744 264679290 catechol_b Comamonas testosteroni CNB-2 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 0.974048234 0.991877933 1.039625647 0.988371754 0.93140059 1.019437745 0.949526861 0.99295282 0.992273269 0.959664277 0.967583969 0.995629572 0.931703471 0.929966443 0.869061504 0.914070349 0.994616092 1.000252562 197090068 catechol_b uncultured bacterium Organic Remediation Aromatics Other aromatics superkingdom:Bacteria; 0.841171187 0.806314293 0.852864499 0.905821268 0.882360786 0.839170746 0.906653965 0.81629916 0.852273901 0.887251431 0.833353076 0.906649561 0.826810542 0.867346946 0.839664389 0.874973786 0.869822742 119225914 catechol uncultured bacterium Organic Remediation Aromatics Other aromatics superkingdom:Bacteria; 0.947109945 0.971261373 0.973898622 0.918880992 0.922675254 0.962829378 0.888662237 0.902642677 0.928871515 0.958490962 0.884882137 0.91640377 0.901283606 0.906463017 0.883344542 0.900915375 0.979374817 0.964690018 307543750 xylanase Halomonas elongata DSM 2581 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas;species:Halomonas elongata; 1.021108795 1.013581029 0.95822989 1.032280543 0.954025627 1.026175679 0.954733648 0.980681323 1.005595422 1.017798274 0.925987943 0.985841068 0.917761887 0.973460062 0.888163954 0.953152343 1.00413169 1.058149589 126236465 cdh Mycobacterium sp. JLS Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 0.972708822 0.92680371 0.972437418 0.914652997 0.883676633 0.916802938 0.824245576 0.936605901 0.933975883 0.904623196 0.880835931 0.864449889 0.904868893 0.885739787 0.860712652 0.871416938 0.956153478 0.912308701 169242378 nagg Mycobacterium abscessus Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 1.186074791 1.218853109 1.149496928 1.161930828 1.181853931 1.23328196 1.128807093 1.125298844 1.12684535 1.168439338 1.191479692 1.145657853 1.182391912 1.174960141 1.145639995 1.160459459 1.216487353 1.177759575 160362622 atzb Delftia acidovorans SPH-1 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 1.210721085 1.100378667 1.113701996 1.159699387 1.121443071 1.136921648 1.132870002 1.146078613 1.126660994 1.097882819 1.105000799 1.122122031 1.114937547 1.068750845 1.072290539 1.068355575 1.156809526 1.100036075 158110914 tfda Frankia sp. EAN1pec Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 0.820869538 0.862906441 0.831260488 0.817491037 0.80287737 0.808549825 0.812686825 0.895089571 316930977 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.868733215 0.875497126 0.870898767 0.859771812 0.840725248 0.814007613 0.803761497 0.880272364 0.899313752 373850890 cellobiase Opitutaceae bacterium TAV5 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 1.181364162 1.166505111 1.142498331 1.161256475 1.150523272 1.181979029 1.116700469 1.146653038 1.15610206 1.14832633 1.148769573 1.145077049 1.126714999 1.119654672 1.104006344 1.107020012 1.177185625 1.163218243 116198469 cutinase Chaetomium globosum CBS 148.51 Carbon Cycling Carbon degradation Cutin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 0.900249033 0.795381856 0.798946158 0.831743539 0.868131879 0.836871091 0.864078111 0.859528585 0.851317616 0.889379534 0.817809781 0.843227654 0.835724177 0.88955272 0.833046539 295898549 tfdb Mycobacterium parascrofulaceum ATCC BAA-614 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium parascrofulaceum; 1.118863416 1.063868839 1.098896756 1.084777479 1.075384 1.048695877 1.084979675 1.063915116 1.089204064 1.076341983 1.108078757 1.093381675 0.969956382 0.996094615 1.019784982 1.031699852 1.078910001 1.078754066 78093542 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.881609777 0.856689069 0.894499923 0.927308114 0.823173128 0.817809981 0.872412333 0.900715043 0.928662725 0.878396255 0.848536013 0.938707102 0.844847417 0.821416519 0.862407748 0.836434582 0.907421991 0.863581953 114189058 pec_Cdeg Aspergillus terreus NIH2624 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 1.000432851 0.869147295 0.936903228 0.894174034 0.936760462 0.937698396 0.917159069 0.882735553 0.920853643 0.943293649 0.919833881 0.916481438 0.922052389 0.897151672 0.867822191 0.88776507 0.939905024 0.893566328 333741244 amyA Treponema primitia ZAS-2 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema primitia; 0.810813367 0.849187272 0.832923978 0.833741831 0.845214361 0.825844057 0.832659427 0.812173654 0.808514902 0.830171166 0.865342208 147886276 phenol_oxidase uncultured bacterium Carbon Cycling Carbon degradation Lignin superkingdom:Bacteria; 0.967092378 0.931937823 0.952034352 0.981861348 0.93463573 0.959682437 1.042133677 1.006736666 0.982588759 1.007271396 0.931958417 0.96157229 0.887990135 0.898080442 0.902651768 0.903129757 0.971494504 1.002710508 397885137 nitro Pseudomonas fluorescens Q2-87 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 1.166716156 1.120180847 1.097952512 1.161609425 1.100530788 1.114381925 1.111737897 1.125104584 1.098231691 1.092839906 1.106821886 1.131643474 1.105767075 1.082487249 1.099073553 1.113039623 1.136601965 1.089918412 170944233 nitrate_reductase Podospora anserina S mat+ Nitrogen N Assimilation NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Lasiosphaeriaceae;genus:Podospora;species:Podospora anserina; 0.923595886 0.850571812 0.854013438 0.867912087 1.027736686 1.124476833 1.027634838 0.858561329 0.867132889 0.962768482 0.958777226 0.876384344 0.890515817 0.853464758 0.949359904 0.936504855 0.885881702 150385379 ara Victivallis vadensis ATCC BAA-548 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Lentisphaerae;family:Victivallaceae;genus:Victivallis;species:Victivallis vadensis; 0.861520977 0.797687655 0.875700164 0.909724984 0.854866545 0.861394135 0.922682655 0.883793232 0.949414002 0.887618126 1.008663314 0.919619067 0.850547214 0.836269834 0.818062749 0.846346112 0.873941183 0.853328155 211905479 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.823460572 0.89023724 0.784674635 0.873900407 0.845344771 0.852734932 0.782963132 0.817362119 0.897005027 0.874871714 0.866657192 114798491 tktA Hyphomonas neptunium ATCC 15444 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Hyphomonas;species:Hyphomonas neptunium; 1.133534296 1.13802644 1.101581541 1.122809594 1.076207791 1.112462924 1.070363143 1.110915954 1.104414311 1.120195504 1.07286447 1.111940178 1.06572363 1.07369999 1.067101625 1.070339504 1.128027277 1.131645808 158316549 cdh Frankia sp. EAN1pec Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 1.082226578 1.097365358 1.06272459 1.054013832 1.006909926 1.050228598 1.01877823 1.049535902 1.080349996 1.058203044 1.040200008 1.043699295 1.058395425 1.037387328 0.998231411 1.029031709 1.072206282 1.087451308 118467352 cdh Mycobacterium smegmatis str. MC2 155 Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 1.267035498 1.273654097 1.233868005 1.265305829 1.260081093 1.284853151 1.214542983 1.223626813 1.225513353 1.231203074 1.212466379 1.229423355 1.245946058 1.193019966 1.192481999 1.244251657 1.280252598 1.244379536 91787506 ben_bcla Polaromonas sp. JS666 virulence NA NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 1.026252479 1.041809769 1.03468594 1.012399827 0.96988064 1.00630059 0.966962968 1.025757784 1.026119157 1.003952902 0.970370221 0.997830557 0.957502157 0.972373387 0.943744569 0.966830955 1.016395322 1.045355762 71726084 amyA Janthinobacterium lividum Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Janthinobacterium; 0.826478328 0.807578904 0.854101133 0.852316247 0.83939332 0.852920537 0.809061837 0.833945978 261407289 b_lactamase Paenibacillus sp. Y412MC10 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 0.810668457 0.827135957 0.823746552 0.842295148 0.824536267 0.815308845 0.855524676 0.846630317 0.844298357 0.869562744 0.891114057 0.875351596 0.827652423 0.869024175 0.830204971 378818012 ppx Nocardia brasiliensis ATCC 700358 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia brasiliensis; 1.123854307 1.019420448 0.988915145 1.027035681 1.004653935 1.01519962 1.015445555 1.046066755 1.045596239 1.020424874 1.016140264 1.031955007 0.985474321 0.970753337 0.967735912 1.023912771 1.04772752 1.036633096 3378405 hcab Novosphingobium aromaticivorans Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 1.234250432 1.189083403 1.197709949 1.208143343 1.204604804 1.208152051 1.190245096 1.199201846 1.196624537 1.173481029 1.198000286 1.208630182 1.219995554 1.161933956 1.18398058 1.195698287 1.215467476 1.192434159 388005021 mhpa Pseudomonas fluorescens Q8r1-96 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 1.156904697 1.129076202 1.095971489 1.118247066 1.102768032 1.110832422 1.086754905 1.114711317 1.128391254 1.088258052 1.017715086 1.106335133 288918408 pme Frankia sp. EUN1f Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 1.150067017 1.092713606 1.089441571 1.073787281 1.039937052 1.110912747 1.027031466 1.056739494 1.123393855 1.101929659 1.030391222 1.049987746 1.068233041 1.081000816 1.12544849 1.067448638 1.083224376 1.112846851 88771700 rubisco Thiobacillus thioparus Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus; 0.841264073 0.89537503 0.86526199 0.854981944 0.849380558 0.871054101 0.846362615 0.84145032 0.798812166 0.84378834 0.849599354 0.818048392 0.851979133 0.920297898 254466756 dmdA Rhodobacterales bacterium Y4I Sulfur DMSP degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 0.815517181 0.828161701 0.806196865 0.822698958 0.807593746 0.793390046 0.827388006 27376604 tfda Bradyrhizobium japonicum USDA 110 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 0.804557963 0.81716605 0.827877275 0.814163673 0.852943345 0.855713825 0.883562091 227272193 xyla Kribbella flavida DSM 17836 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Kribbella;species:Kribbella flavida; 1.109463248 1.157051848 1.097963683 1.106625501 1.095577027 1.095747751 1.096986982 1.078185022 1.067877954 1.065923787 1.033340743 1.078200591 1.03964632 1.050334666 1.093300327 1.060442654 1.077696768 1.121254125 90336806 pgk Aurantimonas manganoxydans SI85-9A1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Aurantimonas;species:Aurantimonas manganoxydans; 0.905220448 0.925077833 0.850400189 0.903415704 0.861489243 0.936331957 0.861195347 0.867985524 0.906031361 0.905796629 0.860848121 0.865208625 0.869821561 0.886575798 0.833182119 0.921378304 0.958366483 387927299 Sir Bacillus methanolicus PB1 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus methanolicus; 0.901883652 0.881064897 0.896625446 0.907726687 0.895671194 0.93247083 0.840420352 0.84728729 0.867737807 0.906428789 0.876289559 0.857840423 0.877094692 0.914482127 0.847800418 0.841901667 0.905635287 0.932845581 258549281 hao Methylomicrobium album BG8 Nitrogen Nitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylomicrobium;species:Methylomicrobium album; 0.844976064 0.806028221 0.838343913 0.917953128 0.825197345 0.849410344 0.905077553 169793380 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.200697959 1.204607396 1.210429887 1.199556826 1.151403482 1.187834685 1.168382023 1.180069531 1.197690153 1.205751842 1.182762252 1.232374773 1.156403549 1.127630161 1.142728534 1.167609621 1.213037155 1.204519404 260751749 rubisco uncultured bacterium Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria; 0.834328705 0.816058366 0.839891977 0.810776841 0.849642671 0.822484095 0.818063249 0.800084844 0.832533102 261371562 tehb Fibrobacter succinogenes subsp. succinogenes S85 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Fibrobacteres;class:Fibrobacteria;order:Fibrobacterales;family:Fibrobacteraceae;genus:Fibrobacter;species:Fibrobacter succinogenes; 0.7760424 0.84673199 0.825996669 0.780258432 0.785296101 0.79749701 0.813532006 328528641 amyA Actinomyces sp. oral taxon 170 str. F0386 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 170; 0.786275459 0.791025602 0.80228038 0.814925083 0.845036442 0.819854644 0.858217837 0.867997471 0.811406233 0.811995237 0.792264315 0.857209493 56312525 bbs Azoarcus sp. EbN1 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 1.02675349 1.013839205 0.981809305 0.944904236 0.989320643 1.00471582 1.002263187 0.998417782 0.957100016 0.97794883 1.002100404 0.983531474 0.969632649 0.946044106 0.921099093 0.939606253 0.993300304 1.010028567 229765830 ara Streptosporangium roseum DSM 43021 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 0.878138303 0.905291332 0.873079409 0.875069643 0.883739921 0.855542134 0.893697473 0.859560828 0.880765148 0.886360968 0.847062564 0.834313509 0.916065041 387875967 limeh Mycobacterium sp. MOTT36Y Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 1.073082462 1.079948357 1.036911002 1.003468869 1.019641074 1.066836023 1.004474023 1.031962657 1.060012964 1.038901792 1.041365689 1.041888229 1.029051113 1.019323008 1.045496334 1.029646971 1.05062758 1.068717001 170935000 fumarase_DiC4HB Thermoproteus neutrophilus V24Sta Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum neutrophilum; 1.11984755 1.06098428 1.075640091 1.100009515 1.094898955 1.091915748 1.093391958 1.109359362 1.075095389 1.057034499 1.07473662 1.077267264 1.056119186 1.036913461 1.007654155 1.035623348 1.069986135 1.079201999 66845873 tannase_Cdeg Aspergillus fumigatus Af293 Carbon Cycling Carbon degradation Tannins superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus fumigatus; 1.084065217 1.098528838 1.066992024 1.108626816 1.093033228 1.091689346 1.064388286 1.072891471 1.066023222 1.076687609 1.060463582 1.086166133 1.059686161 1.05036866 1.064337333 1.090936166 1.110052371 1.057097151 296421199 pec_Cdeg Tuber melanosporum Mel28 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Pezizomycetes;order:Pezizales;family:Tuberaceae;genus:Tuber;species:Tuber melanosporum; 1.189509604 1.145165162 1.137196786 1.194293416 1.113834404 1.186297886 1.131401853 1.153632796 1.167810516 1.151763837 1.148982279 1.156850921 1.122451721 1.137105625 1.112645274 1.167276145 1.18620298 1.141656882 170110953 phenol_oxidase Laccaria bicolor S238N-H82 Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Tricholomataceae;genus:Laccaria;species:Laccaria bicolor; 0.982535722 0.8925247 0.884283867 0.958806228 0.896871546 0.891986979 0.863062502 0.893540651 0.899910039 0.902838069 0.823176766 0.91245478 0.919499085 0.854639678 0.846746508 0.887954744 0.888660817 0.881322335 339279413 one_ring_23diox uncultured bacterium Organic Remediation Aromatics Other aromatics superkingdom:Bacteria; 1.033095859 0.991867667 0.999496403 0.998894773 1.010628272 1.041533758 1.014955159 0.990990303 1.007701551 1.048604376 0.997209747 0.997235808 0.987466582 1.023408723 1.023736823 1.005649789 1.013585585 1.054858189 399524877 nfsa_2 Atopobium sp. ICM58 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Atopobium; 1.140774692 1.119478596 1.005435191 1.034285504 1.024395808 1.05560482 0.996934384 1.043669903 1.059277312 1.011281613 1.0004687 1.083857245 1.031759192 0.953766292 0.967256926 1.057367961 1.095935353 1.095895301 371786306 pmoa uncultured bacterium Carbon Cycling Methane Methane oxidation superkingdom:Bacteria; 0.769504123 0.793003162 294982680 amyA Zunongwangia profunda SM-A87 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Zunongwangia;species:Zunongwangia profunda; 1.045489014 0.977641964 0.926815264 0.990532483 0.952112545 1.014422863 0.964413078 0.992946092 0.998116487 0.985064197 0.952381861 0.992696736 0.935725543 0.952902777 0.891764325 0.953332656 0.986661362 0.990991773 214044303 urec Roseobacter sp. GAI101 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 0.958027757 0.945200778 0.947873638 0.950394842 0.954848807 0.936891905 0.947079098 0.950552899 0.931367108 0.919316447 0.962775956 0.921853447 0.884809023 0.873511962 0.875889345 0.877500636 0.938396397 0.94075773 126716453 fthfs Roseobacter sp. CCS2 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 0.976911521 0.950557502 0.877634436 0.948596002 0.870162688 0.87886814 0.932057581 0.928102199 1.07568694 0.910696442 0.847361205 0.936696927 0.871909034 0.971025024 0.981504284 81254045 urec Mycobacterium tuberculosis C Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tuberculosis; 1.020592789 0.997217138 1.002952876 1.001166087 1.011489498 1.036614322 1.046284266 1.029229663 1.002291621 1.038454013 0.99880347 1.017181949 0.974193831 0.983884828 0.917809669 0.999074984 1.010169023 1.041078573 154246629 pcag Xanthobacter autotrophicus Py2 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 1.518179042 1.478399425 1.496856261 1.504857494 1.487952939 1.508899116 1.482633235 1.518073656 1.48212958 1.465239814 1.481724536 1.498994622 1.462604327 1.45642586 1.465389477 1.478204968 1.47631357 1.466930452 338782389 endoglucanase Achromobacter xylosoxidans AXX-A Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter;species:Achromobacter xylosoxidans; 1.114635686 1.051834539 1.057461401 1.085751746 1.064318874 1.074681041 1.042685899 1.070597993 1.045330363 1.03581622 1.041244898 1.058686636 1.038913895 1.000045329 1.015746059 1.047296591 1.084911293 1.039534591 404421345 chnb Mycobacterium fortuitum subsp. fortuitum DSM 46621 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium fortuitum; 1.609950399 1.584779379 1.575505165 1.57546213 1.568046444 1.603649679 1.552440206 1.586687267 1.55631616 1.550446636 1.558682049 1.563455761 1.561261873 1.516575369 1.556646717 1.534133397 1.596934183 1.526575768 392378783 ben_bcla Azospirillum brasilense Sp245 virulence NA NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum brasilense; 1.420993696 1.378762696 1.41089435 1.416175864 1.401680159 1.40147708 1.402428461 1.439991361 1.39906736 1.381599131 1.388463257 1.424351234 1.38160738 1.345080692 1.37728582 1.390921928 1.370017443 1.359401905 182633542 arsc Beijerinckia indica subsp. indica ATCC 9039 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Beijerinckia;species:Beijerinckia indica; 0.833684415 0.792244077 0.835794295 0.856640728 0.834652112 0.821278508 0.850707867 0.861630661 0.83144576 0.845373116 0.834270733 0.84743348 0.849616467 359504943 FBP_aldolase Sinorhizobium meliloti CCNWSX0020 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium meliloti; 1.351922172 1.310138017 1.27113804 1.319523584 1.270979957 1.311141985 1.265388804 1.304240019 1.297891734 1.280826354 1.2873089 1.314362758 1.263317405 1.270484099 1.222485502 1.279600203 1.309698286 1.260797646 148253386 napa Bradyrhizobium sp. BTAi1 Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 1.046788069 1.048082716 1.023090977 1.054826378 1.047126363 1.033702365 1.073852777 1.029383439 1.01338569 1.038580955 1.034963004 1.035406935 1.041204053 1.005885057 0.990264376 1.066559104 1.020596218 1.047719305 343480617 one_ring_23diox Rhizobium sp. TSY03b Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 0.798572114 0.809419805 0.811526536 0.810001436 0.7557668 0.868072649 27657346 tfdb Defluvibacter lusatiensis Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Aquamicrobium; 0.901348997 0.904426789 0.866674208 0.894963021 0.910731 0.904041636 0.902491423 0.868455415 0.864929204 0.876358592 0.874756115 0.887875437 0.837160305 0.817052105 0.798175777 0.824727866 0.84940143 0.884524743 55415705 dcma Hyphomicrobium sp. KDM4 Organic Remediation Chlorinated solvents Heterocyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium; 0.981644419 0.989888761 0.986352787 0.997769156 0.950732071 1.017471037 0.947927854 0.985025539 1.001573717 1.018956592 0.950918921 0.961978664 0.928019237 1.000113555 0.935049147 0.962766403 0.976502835 1.004392474 373234604 ara Niabella soli DSM 19437 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;genus:Niabella;species:Niabella soli; 0.874936298 0.801954834 0.83385334 0.814639883 0.825421624 0.819421016 0.860749101 0.825803316 146310107 acetylglucosaminidase Enterobacter sp. 638 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 0.982519259 0.869725073 0.89121589 1.021218697 0.918188774 0.888334012 0.927624859 0.932933806 0.89289454 0.884395415 0.908401411 0.924747018 0.877976015 0.82759183 0.816990024 0.92519885 0.920345702 383819136 mult_ring_12DiOx Mycobacterium phlei RIVM601174 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium phlei; 1.007847169 1.051161754 0.9756761 1.020054111 1.02219826 1.033466793 0.973205223 0.975065954 0.931507275 0.994182113 1.001492807 0.97973972 0.985602557 0.984166375 0.952145912 0.965254767 1.014047987 1.058129717 70983253 p450aro Aspergillus fumigatus Af293 Organic Remediation Aromatics polycyclic aromatics superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Aspergillus fumigatus; 0.945504539 0.816449556 0.827702963 0.888606376 0.834682386 0.833542305 0.926263904 0.839613489 6118533 bphc Pseudomonas sp. SY5 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.81551849 0.819689711 0.823394481 0.817005571 0.816885641 0.840450167 0.804538281 0.821218895 0.827496002 0.831476211 325292312 b_lactamase Agrobacterium sp. H13-3 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium; 1.052210873 1.027130126 1.0433544 1.080095202 0.994094447 1.033849896 1.064625976 1.081913572 1.071777894 1.056197879 0.993875875 1.085429068 0.994569499 1.030324558 0.971303851 1.049057078 1.046562274 1.028363429 163811733 rd Dehalococcoides sp. VS Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 0.874966567 0.823337205 0.847305471 0.877733008 0.869654331 0.859345086 0.913272873 0.90148755 0.931072288 0.811783903 0.88200534 0.879421879 0.853599883 0.805741628 0.881174657 0.839796259 150959230 b_lactamase Pseudomonas aeruginosa PA7 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 1.33235309 1.343731344 1.309007988 1.329967857 1.326791311 1.330946685 1.294645993 1.311159365 1.315083513 1.302618702 1.302579764 1.317567852 1.305267764 1.278405556 1.274136288 1.30187194 1.341466375 1.31760314 78093524 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.018730854 1.02397501 1.020218523 0.962030134 0.999183057 1.01639012 0.963992039 1.011331374 0.990631071 0.991119 1.007953467 0.970100809 0.977540819 0.989953901 0.993698076 1.016048555 1.021527056 1.017877486 328919117 TIM Pseudomonas mendocina NK-01 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas mendocina; 1.261752981 1.235297618 1.236154213 1.270402843 1.243163723 1.247507472 1.2144856 1.242284558 1.246846633 1.204445098 1.223311232 1.239714018 1.236140686 1.175710673 1.199314132 1.19271979 1.236100869 1.226309303 82945491 ben_bcla Magnetospirillum magneticum AMB-1 virulence NA NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum magneticum; 1.184122413 1.121374354 1.126171408 1.147932695 1.291717865 1.117250509 1.215076957 1.104279838 1.121993686 1.147071056 1.154558612 1.138773696 1.114039813 1.10352055 1.056790531 1.118022291 1.105665287 1.110240925 302439111 alkb Streptomyces sp. AA4 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 0.796783715 0.820269901 0.78840533 0.850432727 0.796021111 0.839094427 0.826356469 0.824801411 0.804486471 27376012 amyA Bradyrhizobium japonicum USDA 110 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 0.92173752 0.927248989 0.950907664 0.923931193 0.864077962 0.902726135 0.822782211 0.912110526 0.944165868 0.871272077 0.842543799 0.852863294 0.870279097 0.866387915 0.839352386 0.952100829 0.927005291 170748717 nira Methylobacterium radiotolerans JCM 2831 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium radiotolerans; 1.057363184 1.016173496 1.028903876 1.041956145 0.983792555 1.057102636 0.951424956 1.007924276 1.02012008 0.993199484 0.989349754 0.98676481 1.007005278 1.003929162 0.950409253 0.998257884 1.042150504 1.01416524 147850234 CsoS1_CcmK Synechococcus sp. RCC307 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 0.855412774 0.841166452 0.855528523 0.790715418 0.89388323 0.782627982 0.798508789 0.847853008 77378687 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.798153601 0.850484453 0.772798954 0.819443334 0.79534234 0.844497592 219849374 fumarase_3HP4HB Chloroflexus aggregans DSM 9485 Carbon Cycling Carbon fixation 3-hydroxypropionate/4-hydroxybutyrate cycle superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aggregans; 1.067586233 1.10698314 1.048790033 1.060690655 1.032774594 1.011650803 1.013118223 1.042075977 1.045558101 1.060142782 1.054604463 1.065081665 1.022336499 0.996661726 0.969676439 0.99264672 1.046149538 1.06034862 86557797 CsoS1_CcmK Synechococcus sp. JA-2-3B'a(2-13) Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 1.12723931 1.060228636 1.108975097 1.116919451 1.120716573 1.146144019 1.147984602 1.160866 1.140993236 1.103760598 1.114686608 1.111455099 1.120749259 1.082319105 1.121677933 1.115660389 1.125246236 1.085711374 332798557 codh Tepidanaerobacter sp. Re1 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Tepidanaerobacter; 0.960904442 0.969142572 0.967335657 1.018803221 0.949379752 0.975637611 0.935370197 1.036650208 0.974383699 0.957501206 0.930492795 0.974763007 0.952830497 0.924815682 0.915134898 0.929236039 1.000123183 0.983808556 17942392 pcpe Burkholderia cepacia Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 0.890255596 0.885352212 0.920556205 0.919653378 0.919330719 0.887455235 0.931680936 0.894627843 0.914610801 0.979752885 0.960758185 0.922770181 0.866900997 0.901565485 0.824298348 0.889149138 0.927819931 0.946484541 392409040 nosz Desulfomonile tiedjei DSM 6799 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophaceae;genus:Desulfomonile;species:Desulfomonile tiedjei; 0.786325355 0.81309502 0.786735166 0.873386062 0.807205049 0.829091004 0.797554934 0.858152006 0.847184877 0.828756784 0.833802257 0.788973193 356690637 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.980190433 1.084048179 1.004996283 1.036504132 1.04635308 1.015011101 1.046276721 0.998667104 1.014030744 1.026027876 1.027380724 1.036642827 1.055708424 1.010367353 1.020173641 1.029236871 1.004240326 1.041513309 134100915 catechol Saccharopolyspora erythraea NRRL 2338 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 0.841370015 0.804907323 0.866751742 0.905348544 0.890304911 0.884079871 0.857460122 0.805133986 0.868807861 0.935116276 0.806568669 0.855388088 0.910268626 386353364 chitinase Streptomyces cattleya NRRL 8057 = DSM 46488 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces cattleya; 0.838421607 0.834991314 0.834675168 0.852005817 0.817611817 0.833701269 0.828456525 0.819574564 0.812708141 0.852775823 0.816458053 0.761182259 0.839852762 288919426 limeh Frankia sp. EUN1f Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 0.971752661 0.988881391 0.97423238 1.008886256 0.965236539 1.026740812 0.95017357 0.992607526 0.977232749 0.965655028 0.973862203 0.973550121 0.98085008 1.030907757 0.983168695 0.972038037 1.024199632 1.009765932 311230271 amyA Frankia sp. EuI1c Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 1.085765268 1.081332657 1.068614952 1.074248963 1.006833001 1.060016863 1.027286615 1.064760035 1.070874072 1.064455332 1.027955976 1.089291027 1.000311926 1.031778668 1.014919245 1.040868149 1.094193465 1.089364988 212538619 p450aro Penicillium marneffei ATCC 18224 Organic Remediation Aromatics polycyclic aromatics superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 1.09214189 1.085114468 1.091244057 1.107481668 1.057345133 1.027717869 1.053863444 1.081320607 1.154928496 1.051318912 1.063328907 1.095105757 1.024986861 1.004356595 1.04608263 1.035341787 1.107324958 1.050767233 322437661 alginase Granulicella tundricola Carbon Cycling Carbon degradation Alginate superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Granulicella; 0.943813644 0.936663887 0.941848153 0.93651541 0.925309361 0.994031097 0.866091302 0.964812741 0.953163294 0.991157733 0.957094733 0.951554718 0.869662114 0.929071231 0.99039123 0.890099291 0.990746716 1.015376381 224521829 amyA Bacteroides cellulosilyticus DSM 14838 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides cellulosilyticus; 1.066446222 1.017037247 1.05214761 1.070093306 1.05040091 1.049173096 1.042577392 1.053885313 1.080777182 1.053912216 1.058504526 1.061711489 0.999907515 1.003455862 0.979889236 0.998198842 1.058876794 1.049533661 50284400 phytase Enterobacter cloacae Phosphorus Phytic acid hydrolysis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 0.803324846 0.822159311 0.855773888 0.866142532 0.976875102 0.806391725 0.841617659 0.81733233 254391487 amyA Streptomyces clavuligerus ATCC 27064 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces clavuligerus; 1.066853901 1.093387366 1.044520067 1.049028601 1.079797379 1.085821829 1.032510043 1.032516057 1.039145326 1.05162731 1.036972963 1.048544798 1.031953906 1.0317757 1.048598198 1.041971531 1.06119899 1.106939331 311696225 ppk Marinobacter adhaerens HP15 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter adhaerens; 0.887759231 0.951418622 0.896356499 0.862387772 0.834203923 0.866631885 0.851610478 0.860372483 0.810247077 0.889423473 0.817975378 0.842243343 0.835925844 0.872095124 0.860406696 0.834503291 0.835413018 0.948951042 311226202 amyA Frankia sp. EuI1c Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 1.020286081 0.820118684 0.894190358 0.82098511 0.950407025 0.934938706 0.803286462 0.886982012 0.855765979 0.86045703 0.852005051 0.857318982 145217169 chnb Mycobacterium gilvum PYR-GCK Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 1.122935291 1.144388508 1.127750926 1.117044036 1.119359469 1.152948733 1.136001056 1.124915067 1.11748527 1.108275632 1.133816497 1.103486217 1.112082013 1.08481398 1.042831802 1.091054825 1.127579892 1.114126149 398237528 badi Pseudomonas sp. GM78 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.85003872 0.892865798 0.915825178 0.91532412 0.90771788 0.916812549 0.896581777 0.862100368 0.919001478 0.913683148 0.926020353 0.89411514 0.823019897 0.855656525 0.865531051 0.844239404 0.904568236 0.91524373 339487191 GAPDH_Calvin Pseudomonas putida S16 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 0.977539112 0.965957149 0.930092696 0.925177443 0.949943329 0.957958386 0.962744175 0.950477106 0.947936645 0.948472302 0.945523178 0.968840937 0.943853401 0.913753908 0.87068673 0.92236735 0.914234581 0.977091482 257477269 arsc Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Alicyclobacillus;species:Alicyclobacillus acidocaldarius; 0.885741403 0.924568874 0.887087598 0.897299749 0.873422329 0.943782769 0.99760202 0.894747 0.886206354 0.903550481 0.929422183 0.904157734 0.904021107 0.94450464 0.840470131 0.848689455 0.917537915 0.914387252 325299894 xylanase Bacteroides salanitronis DSM 18170 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides salanitronis; 1.04258928 1.055956093 1.078875887 1.091446345 1.116733919 1.064556526 1.127702555 1.111000789 1.056690851 1.057110437 1.066391633 1.111200149 1.102728883 1.032617579 1.062532105 1.096418382 1.03520492 1.032968633 361054949 catechol_b Sulfobacillus acidophilus DSM 10332 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XVII. Incertae Sedis;genus:Sulfobacillus;species:Sulfobacillus acidophilus; 1.297088967 1.257251109 1.260291721 1.300615596 1.298040581 1.332151949 1.285655997 1.286507757 1.28826432 1.286663889 1.257903572 1.357195642 1.237736334 1.229735483 1.250223119 1.264837781 1.25818139 1.239043649 299749055 badh Coprinopsis cinerea okayama7#130 Organic Remediation Aromatics Other aromatics superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 0.877544018 0.878819242 0.820352212 0.843126791 0.85961515 0.877513517 0.816314255 0.844285809 0.815240222 0.827625852 0.858810288 0.889175692 385675992 catechol_b Amycolatopsis sp. ATCC 39116 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis; 1.09378925 1.033292916 1.049605186 1.011632963 0.994332053 1.003347756 0.906860597 0.979836757 1.042421022 0.971620602 0.987538717 0.991111574 0.995222202 0.98163097 0.954635403 0.976847294 1.05184486 1.044331009 37925797 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.944367302 0.880265429 0.9126513 0.898290374 0.91531217 0.901294733 0.89426853 0.931350657 0.90411201 0.868504998 0.913984803 0.91421396 0.857304386 0.837433092 0.813168561 0.93999186 0.835541525 115401928 cellobiase Aspergillus terreus NIH2624 Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 0.973613383 0.945321345 0.929349155 0.946340612 0.919740863 0.956939555 0.893586876 0.914689915 0.960541141 0.971450466 0.926331904 0.95857092 0.898539761 0.879028245 0.840120201 0.888296319 0.972360485 0.977574751 21224556 mannanase Streptomyces coelicolor A3(2) Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 0.94167966 0.988846436 0.958713329 0.985659665 0.927368319 0.958508653 0.924067028 0.970944972 0.974105668 0.96683301 0.949498004 0.972526999 0.915834536 0.95074134 0.897324698 0.922229237 0.950952478 1.000383186 325549754 pcag Xanthomonas gardneri ATCC 19865 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas gardneri; 0.908803053 0.906003016 0.935555269 0.949523108 0.912897665 0.924049925 0.891203782 0.924833118 0.921869579 0.946328314 0.909447507 0.959140872 0.906540192 0.925789337 0.897963074 0.937868175 0.8898004 0.912646649 255019605 soxY Acidithiobacillus caldus ATCC 51756 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus caldus; 0.869104073 0.830122732 0.874894567 0.830958006 0.84142009 0.854035158 0.806901615 0.845951044 0.870762803 0.885377277 94471307 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.8455342 0.853807156 0.868669899 0.88119014 0.861958755 0.865607652 0.884502214 0.817788518 1.194443397 0.896112817 0.930615502 0.855750814 0.909259296 0.840909635 0.811557874 0.904439935 0.955645715 157678998 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.124014196 1.086735761 1.088519304 1.106066254 1.094297013 1.124561372 1.07635735 1.104215218 1.097416547 1.077759067 1.072662768 1.07819496 1.070330336 1.048114481 1.027649812 1.069880976 1.101954974 1.094433308 170027525 napa uncultured bacterium Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria; 0.791457568 0.837060918 0.800034072 0.83362728 1.145066215 0.871521648 0.85186413 0.842523058 0.82651795 0.827218743 0.839762935 157837428 one_ring_23diox Chromohalobacter sp. HS2 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Chromohalobacter; 0.811105001 0.840499334 0.876103986 0.81135685 0.832442051 296852057 rubisco Meiothermus silvanus DSM 9946 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Meiothermus;species:Meiothermus silvanus; 1.523280938 1.506278687 1.485140407 1.505655339 1.500658773 1.496764671 1.493086068 1.515320498 1.492140497 1.469456705 1.482271385 1.517780321 1.465458601 1.435753515 1.469131262 1.478995908 1.496253196 1.442462065 33391331 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.855280357 0.880657427 0.886062308 0.805342174 0.845763001 0.980306031 0.842155276 0.853339818 0.831904742 0.80899225 0.811094532 0.865387944 0.845485991 0.834203653 0.889613537 0.884490232 116691204 bbsg Azoarcus sp. CIB Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 0.851468245 0.804356216 0.838275853 0.798501782 0.805291036 0.824168575 0.837979904 0.811343721 0.811228358 0.810456835 0.84231242 0.801898253 0.816738513 40739518 amyA Aspergillus nidulans FGSC A4 Carbon Cycling Carbon degradation Starch superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 0.883542699 0.834723921 0.888676229 0.924123567 0.820959801 0.814681388 0.851552991 0.87573407 0.886621728 0.816675077 0.846783089 0.815582117 0.821617468 0.817801924 0.846166774 5042250 protease_serine_fungi Metarhizium anisopliae Carbon Cycling Carbon degradation protein superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Clavicipitaceae;genus:Metarhizium; 1.155470313 1.128136436 1.12670139 1.163551095 1.134286739 1.163936282 1.113044961 1.731184712 1.161283041 1.108156655 1.114140812 1.119254963 1.092398457 1.100694207 1.083028765 1.081572021 1.165596602 1.116593398 212633527 chitinase Shewanella piezotolerans WP3 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella piezotolerans; 1.239877366 1.244626868 1.239332648 1.213689769 1.229324789 1.280725052 1.242909875 1.231879435 1.22133726 1.223858567 1.243189504 1.20645609 1.227604638 1.203181823 1.252372383 1.19836251 1.240324178 1.226315734 336321779 ara Cellvibrio] gilvus ATCC 13127 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas;species:[Cellvibrio] gilvus; 1.215712015 1.202894388 1.164696013 1.173921138 1.176217759 1.219899622 1.142572364 1.14162731 1.163609924 1.147923667 1.152723856 1.160975603 1.139815525 1.13750614 1.095820841 1.140971975 1.187920258 1.167080212 321171967 aps_apra uncultured bacterium Sulfur adenylylsulfate reductase NA superkingdom:Bacteria; 0.934063063 0.958371163 0.910054867 0.927382883 0.928051636 0.901911437 0.908453287 0.871214286 0.932163255 0.971272511 0.929394603 0.916833874 0.95976833 0.942205912 0.889396916 0.906478471 0.927139992 0.937171136 319941736 pgk Sutterella wadsworthensis 3_1_45B Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Sutterellaceae;genus:Sutterella;species:Sutterella wadsworthensis; 0.833464115 0.834264116 0.833574572 0.851391223 0.84066901 0.829104916 0.794449339 0.829677868 0.840956382 0.799000242 0.822968948 0.845140983 0.859664978 339627074 GAPDH_Calvin Sulfobacillus acidophilus TPY Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XVII. Incertae Sedis;genus:Sulfobacillus;species:Sulfobacillus acidophilus; 0.987046202 0.93175089 0.992472072 1.006176031 0.941116316 0.961894788 0.917013337 0.974945244 0.955560205 0.985090879 0.951344498 0.968685244 0.989109571 0.98479545 0.945147649 0.973608558 0.970127574 0.973447875 374327258 APS_AprB Pyrobaculum sp. 1860 Sulfur adenylylsulfate reductase NA superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum; 1.149652979 1.096412877 1.137930957 1.149785854 1.15325887 1.115279919 1.134854208 1.138893776 1.143579677 1.142277779 1.118285083 1.132421389 1.14035143 1.073952934 1.086619152 1.083905694 1.128720062 1.083051776 116619348 terc Solibacter usitatus Ellin6076 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 1.106424547 1.115984365 1.087286183 1.055908063 1.074291051 1.088530522 1.075899262 1.096327428 1.072076219 1.046984738 1.043615464 1.074090988 1.084940137 1.046927813 1.024304768 1.026706853 1.057147133 1.085709107 127511600 Sir Shewanella loihica PV-4 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella loihica; 0.787065438 0.897889997 0.842984667 0.829959304 0.813035839 0.83014984 95025963 exopolygalacturonase_fungi Emericella nidulans Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella; 0.847707871 0.945107381 0.842228892 0.851920126 0.879769786 0.920298276 0.862718418 0.849183513 0.856392407 0.925752253 0.867077911 0.909177096 0.884876297 0.879196061 0.912745641 0.886882374 0.939521626 381386512 xyla Phycisphaera mikurensis NBRC 102666 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Planctomycetes;class:Phycisphaerae;order:Phycisphaerales;family:Phycisphaeraceae;genus:Phycisphaera;species:Phycisphaera mikurensis; 1.171403638 0.821486172 0.831850706 0.806447399 0.787623077 0.844538693 0.824901857 0.912369691 0.82836877 0.825872045 373958282 pme Mucilaginibacter paludis DSM 18603 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Mucilaginibacter;species:Mucilaginibacter paludis; 0.880022391 0.866278016 1.035081882 0.906878757 0.967047613 0.849712371 0.84994081 0.942685501 0.86240109 0.859578684 0.912188116 0.804415651 0.921014582 0.861113884 0.904942463 0.866846351 0.866130015 118424461 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.972834283 0.961445111 0.951187527 0.967605189 0.914144394 0.995273698 0.926409382 0.977560626 0.997881282 0.949042909 0.965648843 0.97542495 0.883237574 0.923188728 0.939159032 0.918929841 0.990027019 1.014485914 33385703 nifh Desulfotomaculum nigrificans Nitrogen Nitrogen fixation NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum; 1.092571892 1.133509076 1.063151077 1.072137305 1.107263608 1.095515849 1.07989518 1.024745422 1.062439601 1.125174361 1.111633581 1.107612019 1.081001086 1.061503567 1.008923024 1.052148506 1.053358782 1.074227194 392641842 arsc Bacteroides cellulosilyticus CL02T12C19 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides cellulosilyticus; 0.801575275 0.893051699 0.844762619 0.864781878 0.813537886 0.818313812 0.830720069 0.80863194 0.84990982 0.879510635 359148134 amyA Streptomyces sp. S4 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 1.145342909 1.143843817 1.165517077 1.142322287 1.185289888 1.223151721 1.233256507 1.143517947 1.147931316 1.205709819 1.210271669 1.164464644 1.205826919 1.19023424 1.165839078 1.147490971 1.15577903 1.14696498 16604298 pcpc Sphingomonas sp. UG30 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 0.950328417 0.847801534 0.832164873 0.825611505 0.819350679 0.834594744 0.803094489 0.847692115 0.810839891 291370726 napa Haloferax volcanii DS2 Nitrogen Dissimilatory N reduction NA superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloferax;species:Haloferax volcanii; 1.230924684 1.191261704 1.20068608 1.228568935 1.187419012 1.22651626 1.185978954 1.220046613 1.207931823 1.183739392 1.192297939 1.210810966 1.219517323 1.155699968 1.19173462 1.188752262 1.236934231 1.182773174 134099082 urec Saccharopolyspora erythraea NRRL 2338 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 1.075715446 1.075364081 1.046592278 1.063732357 0.973609106 1.052233121 1.006066999 1.039287477 1.047653616 1.038332189 1.033607078 1.024401174 0.963188677 1.009529851 0.968428948 0.978951129 1.07651589 1.069713632 186475450 FBPase Burkholderia phymatum STM815 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 0.907157843 0.903711524 0.836539552 0.875231519 0.849094305 0.876685709 0.887175277 0.883171917 0.871789019 0.877200094 0.809286995 0.862138707 0.850454774 0.87226022 0.876148076 0.827226265 0.849402608 0.88686612 116612264 terc Arthrobacter sp. FB24 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 0.935336005 0.879997717 0.886223232 0.898413476 0.878795313 0.907099107 0.913715438 0.919554806 0.944362225 0.924687923 0.85695602 0.922395834 0.777263132 0.832004426 0.782685557 0.891251542 0.86184997 0.830486748 119499125 alpha_galactosidase_fungi Neosartorya fischeri NRRL 181 Carbon Cycling Carbon degradation Other superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 1.076500065 1.069882874 1.072188747 1.038883322 1.038805242 1.115540013 1.035901304 1.038738584 1.065721159 1.098284958 1.164996845 1.059334878 1.035636362 1.01736789 1.030165803 1.059882848 1.050037593 1.071871373 347365553 nirk Citrobacter sp. A7(2011) Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter; 0.778228471 0.796516877 0.815338179 0.750374586 0.813927181 338741679 mer Hyphomicrobium sp. MC1 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium; 0.944898504 0.991999852 0.893054803 0.935980543 0.953790482 0.979040533 0.922948785 0.927276572 0.875584582 0.961288353 0.944408849 0.935903315 0.911829471 0.933565346 0.929013552 0.9188791 0.95027125 1.013991392 336297697 amyA Paenibacillus mucilaginosus KNP414 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 0.860858123 0.839454296 0.893624653 0.937425269 0.930074335 0.905645976 0.94412738 0.94821721 0.875008566 0.914875773 0.932590713 0.90005245 0.883939813 0.85762548 0.896972239 0.911225846 157406237 soxY Methylobacterium populi BJ001 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium populi; 1.462237421 1.414167518 1.420619276 1.431135635 1.399932498 1.456325324 1.420662129 1.415788692 1.407540837 1.400377078 1.420867256 1.415882154 1.403206621 1.350966686 1.356866335 1.394243448 1.457877743 1.382218766 152143665 catechol Rhodococcus opacus Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 0.935666211 0.962311938 0.881586064 0.941888294 0.923523968 0.894120976 0.879484872 0.936157554 0.948278124 0.932345946 0.826300389 0.903087612 0.886484968 0.883334528 0.840062145 0.876741684 0.888491449 260771665 amyA Vibrio metschnikovii CIP 69.14 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio metschnikovii; 0.880953209 0.852567244 0.864579313 0.936091385 0.91187241 0.862029001 0.918733124 0.93524336 0.91824693 0.887044299 0.918718648 0.911835928 0.878167582 0.86139208 0.839347799 0.804243566 0.91086451 0.881783424 332372398 rubisco uncultured bacterium Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria; 1.023363704 0.997557505 0.964409639 1.041546157 1.017762378 0.973140489 1.051522468 0.937212058 1.026487365 0.923449271 0.913836887 1.069129865 0.983504296 0.894615638 0.922942551 0.963284549 1.007245816 0.982994305 1255445 amyA Arthrobacter sp. Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 0.882718893 0.971231831 0.924642858 0.883410981 0.968157142 0.944018438 0.911577513 0.870621567 0.863176273 0.835135042 0.822401747 0.84446608 0.895444237 0.888273029 0.834809644 0.850442421 0.924114679 1.086741013 336119729 terc Microlunatus phosphovorus NM-1 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Microlunatus;species:Microlunatus phosphovorus; 1.010222664 1.050405899 1.010581644 1.013046753 0.989282577 1.062562023 1.024792121 1.013954465 1.015805183 1.015760157 1.003711871 1.008432024 0.995698265 1.002456322 0.992323177 1.038333055 1.029305849 1.057279069 221215292 urec Burkholderia multivorans CGD1 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 1.248141664 1.2213138 1.211864963 1.247772851 1.212850303 1.204160489 1.195335493 1.214620374 1.200886682 1.186534614 1.211811242 1.229499741 1.191406189 1.163914705 1.185398889 1.19913928 1.241111227 1.190410428 320332874 ara Deinococcus maricopensis DSM 21211 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus maricopensis; 1.169378675 1.045075004 1.049619632 1.012400088 1.056941418 1.040962108 1.046225882 1.05478109 1.005536009 0.994956727 1.03671872 1.053518124 1.015230741 0.955998869 0.961855965 0.973014389 1.004801433 1.005785904 313679679 terc Oceanithermus profundus DSM 14977 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Oceanithermus;species:Oceanithermus profundus; 1.368970065 1.337418293 1.346785867 1.356590803 1.343923498 1.365048856 1.302621892 1.321423526 1.347051162 1.31633479 1.336059587 1.350457194 1.316423036 1.261267166 1.306413301 1.315698377 1.352598369 1.303731235 337255889 chitinase Myxococcus fulvus HW-1 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus fulvus; 1.007199085 1.012131356 0.968939827 1.045493362 0.937781892 1.016604467 0.954301317 0.994445412 0.998904722 1.014527201 0.925081707 0.989036573 0.894048335 0.984205825 0.890399909 0.938765084 1.033931593 1.067850925 67523811 dehh109 Aspergillus nidulans FGSC A4 Organic Remediation Chlorinated solvents NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 0.96619791 0.965686054 0.959025965 1.006659285 0.964916292 0.94302301 0.997612017 0.93202619 0.980266777 0.945848899 0.993351203 0.960433047 0.914212695 0.904229095 0.919199493 0.934426573 0.983759668 0.970183895 162415385 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.088524554 1.109222091 1.05297711 1.069126271 1.070139324 1.078186986 1.057859551 1.050164739 1.064492726 1.091665496 1.056362114 1.098956794 1.036127928 1.081131984 1.006058437 1.062384475 1.068017852 1.096955251 44903459 pcpe Sphingobium herbicidovorans Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium; 1.254806652 1.239577766 1.223041172 1.244339011 1.232925721 1.232960774 1.2256714 1.227173784 1.216364936 1.187394643 1.198287442 1.223191367 1.200707117 1.145682014 1.160434712 1.181980788 1.23896633 1.198043383 321169001 pme Rahnella sp. Y9602 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Rahnella; 1.236559737 1.225160947 1.197433934 1.182005307 1.177688096 1.234398632 1.174398492 1.17723751 1.186242339 1.197621351 1.190073843 1.177169841 1.163254578 1.162624889 1.099599223 1.155594792 1.188426106 1.218297658 351000844 phenol_oxidase Coriolopsis caperata Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Coriolopsis; 0.854813909 0.858729307 0.803328429 0.826533879 0.840308679 0.811502823 0.827930719 0.873221496 312959927 mhpa Pseudomonas fluorescens WH6 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 0.876117878 0.891216963 0.939100049 0.925261355 0.839395605 0.873190701 0.868727751 0.860285335 0.873874797 0.849129367 0.775665621 0.85441936 0.874264026 0.896150206 326695516 mdlc Acetobacter pomorum DM001 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acetobacter;species:Acetobacter pomorum; 0.918470872 0.926838528 1.021738799 0.991471919 0.902524815 0.905369973 0.92952266 1.043671671 0.931186527 0.93616288 0.914195889 0.92901538 0.862136672 0.914764518 0.920797681 0.938627865 0.895197557 0.959574775 33591786 one_ring_23diox Bordetella pertussis Tohama I Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella pertussis; 0.913205118 0.974185685 0.973807833 0.874573566 0.950624198 0.887142479 0.87144729 0.913665466 0.962046681 0.922756939 0.951477332 0.916876685 0.923519943 0.869328345 0.889859004 0.932031589 0.920388997 212711737 dmsa Providencia alcalifaciens DSM 30120 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia alcalifaciens; 1.107315627 1.06074268 1.024867007 1.078953529 1.029007351 1.011515451 1.025477812 1.08358532 1.064680113 1.015557704 0.995104418 1.048875488 1.036535106 1.003346214 0.985028195 0.99180984 1.056640014 1.031699736 229785484 pula Bifidobacterium angulatum DSM 20098 = JCM 7096 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium angulatum; 0.946787418 0.969518742 0.8917077 0.930638511 0.897365487 0.917841344 0.926156678 0.882220229 0.937358574 0.923338388 0.90669148 0.925238016 0.905987399 0.90727486 0.875199229 0.898008803 0.979112373 0.940375581 78171451 AcnA Chlorobium chlorochromatii CaD3 Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium chlorochromatii; 0.793604078 0.804837746 0.857228423 0.808395713 0.82139898 0.81034274 0.858115476 0.83279352 0.799778084 0.867577679 0.850354381 0.828010319 0.931417521 0.827124423 384522097 mdlc Saccharomonospora glauca K62 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora glauca; 0.789667193 0.853431843 0.826860985 0.79166066 0.899850559 0.816280472 0.884407362 0.813618242 0.838160631 0.82710083 0.819534045 0.883070557 0.880807507 0.839440351 0.921811482 0.899154567 260621641 ara Bacteroides finegoldii DSM 17565 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides finegoldii; 0.862186441 0.910201238 0.826156012 0.809865011 0.860022864 0.841791882 0.830631183 0.908399809 0.890222926 0.855192235 0.906518774 0.866277885 0.845247226 0.873192472 0.829570792 33150446 Sir Porphyra purpurea Sulfur sulfite reduction NA superkingdom:Eukaryota;class:Bangiophyceae;order:Bangiales;family:Bangiaceae;genus:Porphyra; 1.031311613 1.023643237 1.049396043 1.040882162 1.005073213 1.045250485 1.009584495 1.023171759 1.034341238 1.037933171 1.042027136 1.040516114 1.022903595 1.026914047 0.998974668 1.026550739 1.045316675 1.038237425 211584716 chnb Penicillium chrysogenum Wisconsin 54-1255 Organic Remediation Other Hydrocarbons NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 1.136293861 1.152693383 1.093186816 1.155434051 1.06949035 1.105496186 1.104169118 1.123972477 1.109712079 1.105233696 1.058664547 1.121284372 1.037640636 1.075851974 1.03022624 1.070520207 1.128774949 1.130768488 302525666 bphc Streptomyces sp. AA4 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 0.830999228 0.870598075 0.914990985 0.863021094 0.815231413 0.854919852 0.853185669 0.840289244 0.841398681 0.926743539 0.811443791 0.777007682 0.849226527 0.851777466 1.056640185 0.912091266 187438872 nitrate_reductase Isochrysis galbana Nitrogen N Assimilation NA superkingdom:Eukaryota;order:Isochrysidales;family:Isochrysidaceae;genus:Isochrysis; 0.900246894 0.933579946 0.912396157 0.941172377 0.966315835 0.970057613 0.918731775 0.937122968 0.892240133 0.961000376 0.937405918 0.916227016 0.879902525 0.87577042 0.872627917 1.002125541 0.946767084 0.983987683 388487509 amyA Modestobacter marinus Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Geodermatophilaceae;genus:Modestobacter; 1.019320939 1.058154959 1.00067226 1.049600341 1.039911631 1.01499189 0.975606587 1.030875757 1.019768106 1.000088858 0.966894304 1.023800597 0.927092194 0.989828404 0.958429048 0.965198616 1.085600705 1.045945296 323365646 nifh uncultured microorganism Nitrogen Nitrogen fixation NA 0.979361893 0.982764081 0.987219266 1.015122056 0.977549929 0.969479142 0.999784265 0.98347658 0.989801541 0.960926217 1.004392403 0.997221245 0.988207739 0.966441942 0.955720393 0.982940096 0.960457579 0.945804885 55740973 dsra uncultured bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.925957184 0.925016619 0.9133852 0.913904913 0.871483705 0.894178755 0.936990601 0.856396166 0.931398112 0.958693396 0.923642436 0.873523157 0.868969848 0.913639495 0.829211547 0.870312004 0.909620122 0.953476427 120405368 one_ring_23diox Mycobacterium vanbaalenii PYR-1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 0.793668569 0.964313258 0.83195719 0.827941612 0.839933045 0.86980989 0.81234293 0.803145801 0.842465836 0.871764428 0.872123566 0.844046861 0.853707638 0.844871432 0.842314418 0.846434898 0.966963139 251799815 amyA Paenibacillus sp. JDR-2 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 1.191093211 1.224494566 1.159368332 1.177281534 1.183772209 1.21916596 1.20185009 1.152998346 1.19407624 1.184296448 1.20113556 1.183134002 1.172181857 1.133992879 1.153878588 1.170547045 1.189070835 1.156130435 315131747 AcnA Helicobacter felis ATCC 49179 Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Helicobacter;species:Helicobacter felis; 1.122814397 1.100875952 1.112924843 1.160616057 1.129645195 1.123460579 1.107048725 1.121750998 1.135786734 1.132091988 1.12089801 1.154521318 1.15557989 1.091905093 1.101157572 1.120198837 1.141966021 1.073799473 239824424 FBPase Ochrobactrum intermedium LMG 3301 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum intermedium; 0.798907233 0.890168138 0.817604525 0.879660306 0.901318919 0.875453018 0.878795413 0.897682515 0.86774908 0.895299815 0.828684247 0.836620187 0.87449241 0.962658973 0.879659623 0.876244427 0.889161622 0.931898977 84502849 poba Oceanicola batsensis HTCC2597 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola batsensis; 1.270341951 1.238476256 1.239382747 1.229719021 1.277115399 1.29129026 1.314115384 1.245215567 1.241866375 1.259159497 1.261213286 1.239024898 1.222247102 1.217637629 1.198286517 1.186520514 1.232694228 1.247486445 359837192 endoglucanase Actinoplanes sp. SE50/110 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes; 0.871810237 0.867003102 0.818344524 0.884479992 0.849958877 0.853660171 0.887178998 0.880295404 0.822608802 0.826442054 0.875554642 0.859950804 0.899959673 359819840 cutinase Mycobacterium rhodesiae NBB3 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 0.969595521 0.917970313 0.935469586 0.979502563 0.921233651 0.906210103 0.892866799 0.936803268 0.996513296 0.938821134 0.913081345 0.939599457 0.917160452 0.959546208 0.938321831 0.919971702 0.979694822 0.956122146 328803878 acetylglucosaminidase Aeromonas veronii B565 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas veronii; 0.799120924 0.869841796 0.862787027 0.834917875 0.829656346 0.789352094 0.832270439 157370965 chitinase Serratia proteamaculans 568 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia proteamaculans; 0.828414829 0.813321876 0.861193409 0.816540652 0.814594078 0.774402029 0.823694225 86750497 PRI Rhodopseudomonas palustris HaA2 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 0.952004358 0.988154264 0.976810237 0.946466952 0.918139779 0.974287462 0.886396624 0.945889927 0.914406048 0.912948282 0.922295004 0.922844089 0.861345685 0.893153279 0.88881732 0.914189403 0.963425268 0.956196169 145231382 tannase_Cdeg Aspergillus niger Carbon Cycling Carbon degradation Tannins superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 0.809168742 0.925921899 0.856752694 0.857251109 0.835811908 0.884028442 0.82194183 0.867752786 0.854415742 0.874874075 0.830738143 0.842064873 0.817672686 0.843718079 0.857135675 0.818029904 0.857898751 114737272 linc Hyphomonas neptunium ATCC 15444 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Hyphomonas;species:Hyphomonas neptunium; 0.799419053 0.791032238 0.79730664 0.793060288 0.816448201 0.81529786 217504448 mdlc Methylocella silvestris BL2 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Methylocella;species:Methylocella silvestris; 1.164878885 1.09832047 1.11565044 1.159077803 1.132343667 1.11705595 1.125033698 1.143335653 1.143173946 1.114626291 1.118041631 1.124877722 1.088104791 1.05416532 1.043531566 1.058533255 1.143184951 1.059342282 326948094 fumarase_DiC4HB Thermoproteus uzoniensis 768-20 Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Thermoproteus;species:Thermoproteus uzoniensis; 1.08800704 1.007231304 1.066522752 1.057056551 0.986013195 0.950960483 0.975209455 0.997014791 1.03700603 1.023211345 1.01569262 1.018669969 1.006251813 0.972120453 0.942088703 0.990114193 1.064665464 1.022414082 229320879 cutinase Rhodococcus erythropolis SK121 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 0.944874077 0.923221883 0.884135 0.942866335 0.880269191 0.889813958 0.889803721 0.913686111 0.913166388 0.889226171 0.843741714 0.894117972 0.889205863 0.887539162 0.938173761 0.915339257 0.891797872 0.890097059 387937724 chitinase Cellvibrio sp. BR Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio; 1.067582715 1.100762668 1.083646887 1.077641978 1.023031622 1.080888117 1.021275218 1.015372382 0.965968076 1.065006142 1.007836405 1.039014483 1.040971853 1.055388307 0.988761258 1.070133051 1.095311982 1.071474313 221213050 poba Burkholderia multivorans CGD1 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 1.360057249 1.309681971 1.320224511 1.349269674 1.305643953 1.318111671 1.293825037 1.334215113 1.322334298 1.309015934 1.298387705 1.325008007 1.295003979 1.299240561 1.285408292 1.308376515 1.346436621 1.29574591 377531076 ppk Gordonia terrae NBRC 100016 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia terrae; 0.848123693 0.819279885 0.873313996 0.799599374 0.838476714 0.810561903 0.847820107 291447771 chitinase Streptomyces roseosporus NRRL 15998 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces filamentosus; 0.858107348 0.890595396 0.869341617 0.992949787 0.847742787 0.870253893 0.846713577 0.835064493 0.893501352 0.905145912 0.837016949 0.831788937 0.844605692 0.870133745 0.914437639 0.869201595 377531760 urec Gordonia terrae NBRC 100016 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia terrae; 0.991486612 1.012395542 0.874822796 0.958840434 0.867222586 0.918319357 0.854185744 0.86741504 0.968190875 0.917845511 0.90178078 0.892165924 0.889040791 0.905782042 0.874967112 0.883929043 0.978252655 0.917702661 160357972 arsc Acinetobacter sp. DM-2005 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 0.98259826 0.989302337 1.049277439 1.085318358 1.020666399 0.951258794 1.004255738 1.040805193 0.999724144 0.965045911 0.98568511 1.014377591 0.931364365 0.910984206 0.909848598 0.959303844 1.059040542 0.998021842 83318854 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.084160966 1.154962176 1.060318964 1.047817457 1.052349852 1.088340522 1.013826511 1.085656249 1.000883182 1.085817526 1.01567698 1.098521721 0.949594507 1.05723754 0.944474575 0.990037365 1.084650359 1.108550722 121606939 tktA Polaromonas naphthalenivorans CJ2 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 0.849651721 0.871519043 0.862374396 0.818827886 0.855409118 0.889764989 332298188 hyaluronidase Treponema brennaborense DSM 12168 Carbon Cycling Carbon degradation hyaluronic acid superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema brennaborense; 0.760576324 0.787659449 0.78682013 0.824210019 325283086 phytase Deinococcus proteolyticus MRP Phosphorus Phytic acid hydrolysis NA superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus proteolyticus; 0.857008346 0.882773064 0.834364898 0.790920703 0.847736276 0.833121869 0.777009206 0.822237995 0.827379265 0.825110307 0.814516029 0.839604109 218220999 ppx Mitsuokella multacida DSM 20544 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Mitsuokella;species:Mitsuokella multacida; 1.148957099 1.102501582 1.112732556 1.13070386 1.108773098 1.116692351 1.10505285 1.079926291 1.113194639 1.135410403 1.121559102 1.117671779 1.091512163 1.071318773 1.117445457 1.074900204 1.136449625 1.109514675 291197260 exoglucanase uncultured fungus Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi; 0.887082972 0.830761089 0.876170347 0.907099211 0.850412517 0.868160081 0.911222549 0.858621188 0.892587993 0.880639472 0.87700073 0.828152875 0.825995014 0.797908305 0.855588128 0.846464535 120867521 terc Neisseria meningitidis FAM18 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria meningitidis; 0.901095994 0.969062674 0.868757106 0.990616182 0.936924456 0.954935446 0.886574205 0.961393983 0.962088444 0.906972798 0.913796809 0.964625791 0.934772575 0.94321926 0.901876215 0.897590596 0.935210342 0.942668361 74038344 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.34562485 1.286986861 1.326199054 1.341909354 1.326732941 1.316834679 1.327115359 1.340173829 1.325122654 1.296294513 1.304609369 1.340310601 1.319189249 1.256663541 1.29678246 1.309801692 1.340830605 1.284495078 209486061 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.951264219 0.949486082 0.93031313 0.981658228 0.910136317 0.912215062 0.937680414 0.968546215 0.97769882 0.906610567 0.961592401 0.933556928 0.938444171 0.888491695 0.894983534 0.908249221 0.936798036 0.911689514 295897811 cutinase Mycobacterium parascrofulaceum ATCC BAA-614 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium parascrofulaceum; 0.949449757 0.95617457 0.942593297 0.94155716 0.942204876 0.996734024 0.975367079 0.922279358 0.915854894 1.005888851 0.95137758 0.934469277 0.945863481 0.980600106 0.956167788 0.947658533 0.988223118 0.989177311 94471197 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.778179749 0.797521342 0.801849875 0.797065725 347523400 PEPC Pyrolobus fumarii 1A Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Desulfurococcales;family:Pyrodictiaceae;genus:Pyrolobus;species:Pyrolobus fumarii; 1.034680348 1.006745257 1.04315629 1.077215839 1.071673077 1.064468427 1.082190419 1.066240008 1.066247243 1.047757933 1.027915146 1.071173169 1.040829658 1.009014878 1.011241153 0.980767301 1.059542294 1.030533133 374434736 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.944514442 0.942792849 0.90935517 0.947088824 0.928201976 0.923271203 0.867524365 0.916978908 0.923424818 0.911104234 0.879232175 0.923004972 0.881402197 0.929742615 0.922157104 0.904740362 0.952218585 0.948256015 224039153 alpha_galactosidase_fungi Penicillium janczewskii Carbon Cycling Carbon degradation Other superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium; 0.898196061 0.871638425 0.87755015 0.935826882 0.914850558 0.887462781 0.922278066 0.879318633 0.916973944 0.884571209 0.876137316 0.906452042 0.894499549 0.88786978 0.859797748 0.879359651 0.934870652 0.867168399 326412358 FBPase Polymorphum gilvum SL003B-26A1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;species:Polymorphum gilvum; 1.182463686 1.166614738 1.129430412 1.153997985 1.095417362 1.176884265 1.099547838 1.136412991 1.139339556 1.15510389 1.136318041 1.12375868 1.093454947 1.130090687 1.091573922 1.107197534 1.162693206 1.169193295 379650246 acetylglucosaminidase Flavobacterium frigoris PS1 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Flavobacterium;species:Flavobacterium frigoris; 0.801363943 0.828099857 0.782911481 0.793001051 0.833342978 0.803533616 0.827536399 0.806316569 396584069 terc Actinomyces sp. ICM47 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces; 1.444990358 1.37431901 1.354044764 1.409116403 1.345164704 1.390181272 1.35318615 1.351706325 1.363341221 1.35229454 1.337585964 1.344816547 1.313633614 1.353697644 1.293983381 1.340230937 1.369743479 1.362265762 146308153 amyA Pseudomonas mendocina ymp Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas mendocina; 1.408555705 1.351710392 1.350725118 1.367258203 1.403663254 1.429711991 1.343181207 1.332048269 1.369925396 1.359088087 1.398666982 1.374518642 1.338142804 1.296591072 1.30046242 1.341358799 1.426181492 1.309723694 20904457 codh Methanosarcina mazei Go1 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosarcinaceae;genus:Methanosarcina;species:Methanosarcina mazei; 1.202184697 1.134069757 1.118307094 1.195006708 1.105222793 1.176478091 1.163064737 1.185691019 1.16611499 1.144644721 1.138368202 1.156728009 1.124112675 1.131849212 1.097482453 1.134826491 1.169467611 1.126380477 284015962 arsm Haloterrigena turkmenica DSM 5511 Metal Homeostasis Arsenic Detoxification superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloterrigena;species:Haloterrigena turkmenica; 0.763072004 0.797448492 0.813184529 0.808431572 0.84721408 0.821331143 0.794490917 0.807029933 0.894505232 381200989 ppx Sphingobium yanoikuyae XLDN2-5 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium;species:Sphingobium yanoikuyae; 0.993417723 0.975210158 0.934391672 1.020903285 0.950120409 0.965239923 0.93741132 0.989504924 0.991598122 0.937809685 0.938017166 0.989949801 0.921825949 0.949922668 0.904757874 0.915870148 0.991293392 0.979356943 148474814 napa uncultured bacterium Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria; 0.950296968 0.930571855 0.950274109 0.870763472 0.853243448 0.882226735 0.870716741 0.921253633 0.923190554 0.894925475 0.875869243 0.890168252 0.860574524 0.838623698 0.943065314 0.886460048 90423833 ppx Rhodopseudomonas palustris BisB18 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 0.955892899 0.954553292 0.932309903 0.979750491 0.975218822 0.945345862 0.934177429 0.945214979 0.947749126 0.946613882 0.941168823 0.944305025 0.928123065 0.887419143 0.907837017 0.904623984 0.985769937 0.926516812 398315872 poba Amycolatopsis mediterranei S699 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 0.831937598 0.822123642 0.812503096 0.795479427 0.77579648 0.877569653 384464922 dehh109 Citreicella sp. 357 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Citreicella; 1.183975376 1.165058979 1.191258083 1.172537301 1.186827055 1.184585838 1.211335635 1.182053115 1.168131877 1.187985109 1.189899903 1.195758613 1.139384107 1.128390245 1.14568062 1.179845037 1.225588606 1.199050997 254515793 PRI gamma proteobacterium NOR5-3 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 1.119193391 1.029513967 0.955975752 0.949519899 0.96523501 1.038523409 0.944545233 0.933706057 0.910339874 1.027402755 0.916394827 0.967544455 0.980142821 1.063459574 0.911898142 0.964966761 0.964613492 1.025978489 114196761 pme_Cdeg Aspergillus terreus NIH2624 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 1.126923638 1.115961034 1.115463049 1.137055337 1.138112082 1.172086566 1.094495999 1.059205738 1.117877198 1.08430238 1.068129835 1.087960755 1.064320298 1.066900339 1.031783008 1.090834239 1.147377275 1.140455601 146342649 amyA Bradyrhizobium sp. ORS 278 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 1.098668721 1.109424025 1.117646583 1.094133308 0.990378362 1.057753898 1.010923551 1.05233581 1.089292506 1.063269559 1.046553396 1.020575784 0.978984731 1.095736132 0.981529514 1.00761298 1.095516137 1.100631464 1526987 pec_Cdeg Nectria haematococca mpVI Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Fusarium;species:Nectria haematococca; 0.868245883 0.876858552 0.890253822 0.854155132 0.849741907 0.898278903 0.820575614 0.858175549 0.810558866 0.839403293 0.886236418 0.797333794 0.932096482 0.866268581 333487705 cutinase Mycobacterium sp. JDM601 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 1.134857546 1.10872581 1.103677524 1.135958221 1.091020798 1.09875591 1.108044771 1.133685507 1.088645023 1.066878341 1.095252954 1.115971972 1.070241708 1.060596958 1.005552125 1.063615772 1.121276554 1.109771197 114800512 terc Hyphomonas neptunium ATCC 15444 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Hyphomonas;species:Hyphomonas neptunium; 0.949552066 0.937293377 0.902381085 0.935321431 0.850474865 0.926982793 0.878146534 0.90342503 0.908184476 0.915707962 0.889748879 0.888780584 0.834410256 0.892270484 0.884287889 0.950757521 0.946843759 300717217 amyA Erwinia billingiae Eb661 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia billingiae; 1.133078059 0.875356126 0.872631417 0.791874261 0.854238578 0.815734991 0.794281879 0.845925441 0.902190022 46917288 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.78054458 0.846491399 91697165 catechol Polaromonas sp. JS666 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 0.860793105 0.894877543 0.868221399 0.897682962 0.892756226 0.855494697 0.890234647 0.858935454 0.858961386 0.84999923 0.882121614 0.882557234 0.866615618 0.833664074 0.844912464 0.86435179 0.876449658 0.880567329 315250987 amyA Prevotella buccae ATCC 33574 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella buccae; 0.798541529 0.868649684 0.855866636 0.827102403 0.814964037 0.814170975 0.8370165 0.831473915 0.83486919 0.803678092 0.811208161 0.882674521 353544174 ccmL Desulfosporosinus meridiei DSM 13257 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfosporosinus;species:Desulfosporosinus meridiei; 1.143181122 1.065212127 1.080428251 1.106486208 1.000802588 1.09002258 1.021967858 1.054254492 1.079315553 1.056579428 1.043608969 1.041172327 1.035994931 1.038069244 0.994591767 1.040183187 1.091863192 1.078661252 157285618 napa uncultured bacterium Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria; 1.104957415 1.111866973 0.993555737 1.089214897 1.099394776 1.107576205 1.083273664 1.046703374 1.009795903 1.098677249 1.088365628 1.061693342 1.085483888 1.065443921 1.002494928 1.064906386 1.034090265 1.093044616 239591309 oxdb Ajellomyces dermatitidis SLH14081 Organic Remediation Aromatics Nitoaromatics superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces dermatitidis; 0.791949942 0.845784921 88780561 fthfs Polaribacter irgensii 23-P Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Polaribacter;species:Polaribacter irgensii; 0.920546672 0.868942487 0.863396724 0.966402973 0.938483451 0.83911041 0.880775535 0.865240127 0.921821676 0.914501322 1.012851209 0.970574796 0.859576379 0.879593739 0.863364446 0.876079381 0.932248181 0.874696556 374604385 chitinase Paenibacillus dendritiformis C454 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus dendritiformis; 1.009719315 0.996720368 1.002578984 1.023313498 0.990645082 0.989497093 1.024845418 1.019722348 0.95964553 0.965384015 0.971772218 1.029597065 0.980281554 0.904877883 0.927185875 0.923333184 1.000024608 0.965626354 21388669 bphc Rhodococcus sp. YK2 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 0.859537168 0.892978477 0.806382604 0.867305172 0.826212457 0.833153292 0.813899735 0.833507426 0.806404421 0.838153928 0.818931353 0.810917451 0.823337182 0.834031065 0.838010041 164455870 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 0.802157762 0.854298568 0.787017281 0.876532261 0.883481393 0.79792134 0.783196676 0.890614668 0.838875556 0.850138496 0.806131925 0.843416476 0.843596574 0.881147605 149808813 nosz Moritella sp. PE36 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Moritellaceae;genus:Moritella; 1.284099001 1.284247552 1.263918857 1.279551398 1.273861249 1.236801008 1.268548809 1.250581069 1.272911497 1.305032826 1.317441123 1.357341811 1.236853364 1.191377515 1.190428346 1.268470915 1.235231073 1.256039938 112379621 rubisco uncultured proteobacterium Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria; 1.030106718 0.998979826 0.982677781 1.019017015 0.984231467 1.017081455 0.974750466 0.989766827 0.969405109 0.970694664 0.992258325 1.027103307 0.979059793 0.961389399 0.968644925 0.999174561 1.039137545 1.007236015 187923580 catb Burkholderia phytofirmans PsJN Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 0.817272355 0.812259031 58270744 amyA Cryptococcus neoformans var. neoformans JEC21 Carbon Cycling Carbon degradation Starch superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Tremellomycetes;order:Tremellales;family:Tremellaceae;genus:Filobasidiella;species:Cryptococcus neoformans; 1.098659571 1.076220829 1.063064196 1.108251757 1.080819023 1.046024699 1.070463403 1.070657445 1.062119074 1.092328846 1.058477068 1.075113963 1.013629365 1.020811711 1.050820929 1.021456393 1.073719947 1.059143459 117929240 exochitinase Acidothermus cellulolyticus 11B Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Acidothermaceae;genus:Acidothermus;species:Acidothermus cellulolyticus; 1.368747206 1.344413212 1.380743955 1.345161542 1.333558529 1.360385563 1.340972585 1.371368269 1.334732909 1.331653107 1.31362483 1.353233468 164659143 glx Malassezia globosa CBS 7966 Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Exobasidiomycetes;order:Malasseziales;family:Malasseziaceae;genus:Malassezia;species:Malassezia globosa; 1.161227169 1.1163796 1.146206598 1.178359742 1.168875539 1.233255911 1.13885209 1.146347758 1.148387136 1.160965756 1.146186219 1.207996805 1.148202828 1.151646264 1.128483288 1.144262756 1.138556341 1.133427205 7804881 endopolygalacturonase_fungi Leptosphaeria maculans Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Leptosphaeriaceae;genus:Leptosphaeria; 0.983151117 0.991788053 0.94378665 1.011268184 0.953985801 0.994997577 0.930952985 0.95192949 0.988055889 0.937641168 0.955558913 0.95533522 0.950580424 0.943545792 0.972650492 0.877459118 0.985001421 0.993612295 93354286 FBP_aldolase Cupriavidus metallidurans CH34 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 1.38265199 1.357429328 1.330329387 1.327142942 1.324768395 1.367467274 1.307716105 1.321221276 1.309936257 1.316332037 1.324882942 1.329888837 1.303000349 1.315494692 1.292892517 1.321465093 1.34938677 1.326137036 340357402 fthfs Sporosarcina newyorkensis 2681 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Planococcaceae;genus:Sporosarcina;species:Sporosarcina newyorkensis; 1.369614754 1.351310286 1.350081408 1.377532651 1.356237448 1.354515116 1.346954764 1.385534569 1.334221973 1.343904979 1.360800291 1.368578836 1.327004807 1.310140758 1.333395479 1.345934916 1.343182425 1.3066957 355335081 xylj Pseudoxanthomonas spadix BD-a59 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Pseudoxanthomonas;species:Pseudoxanthomonas spadix; 1.189347783 1.17874792 1.176021857 1.151313821 1.09548737 1.172147871 1.116199136 1.150431346 1.148622893 1.14321243 1.131513276 1.126433502 1.063204356 1.129114512 1.078443457 1.13012551 1.184271059 1.200459146 83309166 tktA Magnetospirillum magneticum AMB-1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum magneticum; 1.277825969 1.134042669 1.13564101 1.170353969 1.141151238 1.173672318 1.116713077 1.157775109 1.177971122 1.155520648 1.106209483 1.173398249 1.115737734 1.134828233 1.082623147 1.124760285 1.147201416 1.138896121 393724662 amyA Sphingomonas sp. PAMC 26605 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 0.790242334 0.793604591 0.835561271 0.814653054 0.796069627 0.88193592 0.850486335 0.810598427 0.918443498 0.826358251 0.872188662 160917625 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.924740249 0.873564695 0.860473478 0.981440996 0.883238739 0.902627344 0.874847671 0.896881532 0.924701547 0.858199105 0.874575689 0.913866301 0.873483451 0.869940461 0.892523912 0.882008842 0.953638851 0.922053764 115449825 exopolygalacturonase_fungi Aspergillus terreus NIH2624 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 0.998874741 0.837277641 0.800145729 0.859246866 0.884344463 0.811044717 0.775595092 0.859921513 0.96082531 0.82052103 0.838583443 0.807548597 0.828465444 0.83700588 0.874319063 338233408 alkk Bradyrhizobiaceae bacterium SG-6C Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae; 0.867036587 0.808651957 0.846341406 0.861388504 0.859504072 0.816490821 0.797506648 0.829757489 0.846953614 0.841323648 0.83198952 374623928 ppx Ectothiorhodospira sp. PHS-1 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Ectothiorhodospira; 0.938139602 0.911892771 0.906286403 0.888006854 0.963303704 0.973225915 0.884350395 0.964375795 0.944748295 0.948744488 0.887216449 0.956848123 0.918802782 0.990490749 0.951859825 0.901458467 0.930779308 0.934750502 269305905 cellobiase Xylanimonas cellulosilytica DSM 15894 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Promicromonosporaceae;genus:Xylanimonas;species:Xylanimonas cellulosilytica; 1.028090834 1.011658251 1.017733284 1.011396389 0.989236123 1.024070058 0.965235695 0.993487776 1.004402823 0.973327773 0.980885199 1.026138921 0.966361827 0.950857992 0.959704826 1.03378218 1.047064442 1.030895695 254774366 amyA Mycobacterium avium subsp. avium ATCC 25291 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 0.904565163 0.869109425 0.813586344 0.871601372 0.856728366 0.870204259 0.87591283 1.12265331 0.882973045 0.870170865 0.844270195 0.842011685 0.842849355 0.841929328 0.815056412 0.866244636 0.910989226 19526729 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 1.092297005 1.06921188 1.09098108 1.108309321 1.059771475 1.202218347 1.041564446 1.105351285 1.102377881 1.105212186 1.052583264 1.111169084 1.054151063 1.121669902 1.038319535 1.047742729 1.084667891 1.100411803 282163575 nifh Methanocella paludicola SANAE Nitrogen Nitrogen fixation NA superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanocellales;family:Methanocellaceae;genus:Methanocella;species:Methanocella paludicola; 0.800793714 0.828881553 0.814100626 0.778076926 0.754264716 0.834293432 222448425 amyA Chloroflexus sp. Y-400-fl Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus; 1.091665741 1.081979865 1.088375311 1.11458582 1.077696081 1.064866692 1.089442479 1.092213762 1.08875157 1.056973741 1.096283623 1.091126865 1.030549509 1.042967141 1.068898753 1.066289064 1.081151606 1.063387963 45990 B_lactamase_A Rhodobacter capsulatus Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter; 1.272236134 1.288782625 1.249891512 1.232121317 1.24039883 1.290111349 1.197326928 1.224355417 1.203423927 1.237044185 1.243631859 1.234007605 1.21080905 1.224207245 1.213286668 1.229459421 1.265319994 1.280835426 4633560 nosz uncultured bacterium 696W Nitrogen Denitrification NA superkingdom:Bacteria; 1.000803909 1.050776243 0.989224053 1.029395299 1.051144499 1.07566016 1.013625543 1.007865153 1.029729308 1.044670003 1.062249339 1.032764075 0.997727643 0.98871422 0.998035399 0.99327928 1.055412622 1.05403735 371552168 amyA Streptomyces coelicoflavus ZG0656 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicoflavus; 1.036696733 1.049797963 1.012901779 1.073111529 1.045763039 1.041408649 1.021659126 1.037612562 1.024841732 1.014733322 1.02900495 1.060369589 1.030260481 0.996302362 1.008923176 1.029428915 1.021005339 1.011206748 398147904 poba Pseudomonas sp. GM30 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 1.216229902 1.169726266 1.179434598 1.198742227 1.142259511 1.181772896 1.145828634 1.194295989 1.168711632 1.153999708 1.150314228 1.174802599 1.15123088 1.137031666 1.126479415 1.145026149 1.185894672 1.161180835 227111749 nrfa Pectobacterium carotovorum subsp. brasiliensis PBR1692 Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium carotovorum; 1.244362111 1.217440891 1.209460898 1.231187214 1.211066432 1.22149006 1.181600337 1.206593464 1.199118149 1.188621136 1.196722875 1.201593594 1.195036175 1.16107549 1.160058418 1.171514051 1.221537995 1.189727733 335439005 Bacteriorhodopsin Halorhabdus tiamatea SARL4B Secondary metabolism Pigments Rhodopsin superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halorhabdus;species:Halorhabdus tiamatea; 1.012659587 0.94420805 0.954434048 0.973594311 0.904630526 0.954317015 0.926510344 0.904040758 0.94226031 0.974234928 0.972638391 0.965755977 0.936627064 0.887011827 0.842706243 0.929239293 0.976308476 0.92083039 407983376 bphc Mycobacterium hassiacum DSM 44199 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium hassiacum; 1.06247897 1.065383209 1.063432365 1.074022658 1.036773811 1.049182073 1.005931371 1.010818139 1.024541398 1.068822698 1.019553141 1.078631004 1.005963426 1.045451068 1.04055821 1.053090372 1.068911657 1.009142534 374368450 catechol Cupriavidus basilensis OR16 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus basilensis; 0.828586954 0.930661412 0.980086178 0.843037945 0.838584335 0.865615936 0.857851411 0.859202978 0.867350837 0.819155399 0.832936716 0.839849505 0.865540194 0.888993844 193085181 dsra Chlorobaculum parvum NCIB 8327 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobaculum;species:Chlorobaculum parvum; 0.810412277 0.790914412 0.786113446 0.85079351 311694006 bphF1 Marinobacter adhaerens HP15 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter adhaerens; 0.888332578 0.850898506 0.806681508 0.874559222 118424451 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.800102687 0.823112963 0.803404678 0.828907947 0.80542738 288345682 pcag Frankia sp. EUN1f Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 1.001430492 0.976111597 1.010930966 0.961793296 0.912249698 0.963319041 0.970970837 0.948488989 1.005993831 0.991303235 0.948920589 0.99370362 0.907194978 0.913288998 0.933901849 0.932850055 0.992558513 1.042423068 309312337 glucoamylase Puccinia graminis f. sp. tritici CRL 75-36-700-3 Carbon Cycling Carbon degradation Starch superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;order:Pucciniales;family:Pucciniaceae;genus:Puccinia;species:Puccinia graminis; 1.137616273 1.165251126 1.136497401 1.137538 1.110458151 1.125818067 1.105489188 1.043518124 1.108001325 1.094318511 1.098986218 1.091942452 1.055850563 1.049105843 1.038037782 1.048713937 1.099435675 1.128930978 302885360 lactase_fungi Nectria haematococca mpVI 77-13-4 Carbon Cycling Carbon degradation Lactose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Fusarium;species:Nectria haematococca; 0.89607072 0.794324874 0.809544139 0.85174293 0.845146846 0.808051137 0.888169212 0.85235717 0.862073667 0.893072538 1223912 pme_Cdeg Aspergillus aculeatus Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 1.011701707 0.994772875 1.028879549 0.958816244 1.094472547 1.050400888 1.081902511 0.977563326 0.973196443 1.03704795 1.040233054 0.993310272 1.085038733 1.111745737 1.06080526 1.021158108 0.975401339 1.0299257 146191610 atzb Bradyrhizobium sp. ORS278 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.974580179 0.948050136 0.965771703 1.007103369 0.913536917 0.967868519 0.934702305 0.979172722 0.984402724 0.962495653 0.953440521 0.974410587 0.920445378 0.939461801 0.887431986 0.932328725 0.985284732 0.953624877 326207272 dehh109 Novosphingobium nitrogenifigens DSM 19370 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium nitrogenifigens; 1.216742832 1.191889785 1.163601046 1.197896172 1.162696867 1.200125303 1.14772536 1.168762202 1.187893666 1.155185275 1.171477768 1.184792644 1.153533957 1.163709628 1.13154342 1.176754741 1.227186326 1.152912882 116222548 cmci Candidatus Solibacter usitatus Ellin6076 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 0.843116062 0.850532368 1.041846935 0.819260077 0.8295941 1.078253815 0.879376631 0.893741792 0.79488205 0.923635835 1.000074279 1.071617587 1.038625666 0.974514119 0.984076421 296536034 ben_bcla Roseomonas cervicalis ATCC 49957 virulence NA NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Roseomonas;species:Roseomonas cervicalis; 0.786832194 0.797563063 0.819009378 0.815081816 0.831293564 0.863846425 0.839702359 0.822069024 0.812115398 0.802148013 0.787657811 0.858916968 45169801 pel_Cdeg Penicillium expansum Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium; 0.922378589 0.923695071 0.856757189 0.949431018 0.840096155 0.898009568 0.859517224 0.962056751 0.930196652 0.892566116 0.894834742 0.815430049 0.84952427 0.831663541 0.931552179 0.911185128 375140555 cutinase Mycobacterium rhodesiae NBB3 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 1.018457419 0.81668244 0.831418338 0.827563677 0.814747752 0.836478966 0.855747953 0.836538751 0.860704216 119482173 phospholipase_D_fungi Neosartorya fischeri NRRL 181 Carbon Cycling Carbon degradation Phospholipids superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 0.880739764 0.821928958 0.861091163 0.861951194 0.864340715 0.825139976 0.807672593 0.821633694 0.835165935 0.865239964 0.825934124 158319459 chitinase Alkaliphilus oremlandii OhILAs Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Alkaliphilus;species:Alkaliphilus oremlandii; 0.832764979 0.852055654 0.835521756 0.858321809 0.839492439 0.823397137 0.856508878 0.808578387 0.840875439 0.820180679 0.828568141 0.800363521 0.849790016 0.866996213 372006791 nifh Holophaga foetida DSM 6591 Nitrogen Nitrogen fixation NA superkingdom:Bacteria;phylum:Acidobacteria;class:Holophagae;order:Holophagales;family:Holophagaceae;genus:Holophaga;species:Holophaga foetida; 1.278849011 1.256779651 1.253422466 1.26730478 1.250953439 1.282838982 1.227778662 1.219317434 1.241191363 1.195437684 1.21492395 1.228259657 1.218138371 1.185483922 1.192064227 1.205667103 1.279039792 1.233946254 212640012 amyA Anoxybacillus flavithermus WK1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Anoxybacillus;species:Anoxybacillus flavithermus; 0.77511195 0.79294157 0.854236192 0.853451804 0.927366488 0.835887717 0.796420219 0.820108533 0.82491929 0.820616206 0.832413753 89512536 nifh uncultured nitrogen-fixing bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 1.011567799 0.970658143 0.951041757 1.034616242 0.970142689 0.991745401 0.966395879 0.993615948 1.017847459 0.96840942 0.989419624 1.01515434 0.947741147 0.911229278 0.905803361 0.941617522 1.029761775 0.968934864 78700534 dsrB Alkalilimnicola ehrlichei MLHE-1 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Alkalilimnicola;species:Alkalilimnicola ehrlichii; 0.993687026 1.023529289 0.96919055 0.977069594 0.963194023 1.011216616 0.911916456 0.949916534 0.883897499 0.974454358 0.942143082 0.93806933 0.941082507 0.961119696 0.880639244 0.936052717 0.975507413 1.020274471 9081816 amyA Pseudomonas sp. W7 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria; 0.928807061 0.915006655 1.007029473 0.904999045 0.955093084 0.934392025 0.942286007 0.921342689 0.953702172 0.948160259 0.925588789 0.944056451 0.912114433 0.924904456 0.870377723 0.961418691 0.941766311 372266348 alginase Alteromonas sp. S89 Carbon Cycling Carbon degradation Alginate superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Microbulbifer;species:Microbulbifer agarilyticus; 1.119485868 1.167717398 1.127963894 1.143556284 1.15674283 1.134618352 1.165627118 1.155846061 1.151531324 1.118641557 1.141186304 1.128993243 1.138542016 1.061523464 1.10047194 1.072396303 1.114705113 1.09499169 86136892 linb Roseobacter sp. MED193 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 0.955525494 0.985179402 0.905483925 0.959492643 0.913239734 0.914899893 0.903769618 0.933584919 0.958920689 0.892261074 0.855108976 0.939482828 0.894140309 0.851855051 0.849855157 0.871105928 0.954363882 0.96441575 90590260 xylanase Flavobacterium johnsoniae UW101 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Flavobacterium;species:Flavobacterium johnsoniae; 0.808565071 0.793216389 0.86179487 408376666 pcag Agrobacterium albertimagni AOL15 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium albertimagni; 0.971641315 0.969344164 0.944807629 1.003479163 0.953123944 0.943312538 0.950737894 0.963475248 0.960917593 1.008037901 0.947066436 0.964932095 0.905145303 0.947334406 0.874788531 0.968108526 1.005664261 1.015465547 334858987 xylj Frankia symbiont of Datisca glomerata Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 0.935333455 1.018986496 0.984495752 0.973528066 0.984168183 1.001292894 0.914392333 0.87122888 0.92678277 1.006708696 0.892822436 0.954792917 0.962189947 0.956921429 0.907266444 0.938476783 0.987471387 1.016347713 326388551 xylg Novosphingobium nitrogenifigens DSM 19370 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium nitrogenifigens; 1.152797916 1.116112484 1.119904251 1.151037191 1.103298836 1.143470063 1.11580509 1.135433163 1.135364381 1.108655529 1.125914826 1.125092932 1.089355359 1.086395554 1.085994385 1.116327717 1.143451274 1.132994691 302411860 pec_Cdeg Verticillium albo-atrum VaMs.102 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticilium;species:Verticillium albo-atrum; 1.148071612 1.131383174 1.103680822 1.142444447 1.074894023 1.13616148 1.134639932 1.111753931 1.112135731 1.121424001 1.100850651 1.116323106 1.048081921 1.086148565 1.003923142 1.083095595 1.134857352 1.127110329 298244593 linb Ktedonobacter racemifer DSM 44963 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Chloroflexi;class:Ktedonobacteria;order:Ktedonobacterales;family:Ktedonobacteraceae;genus:Ktedonobacter;species:Ktedonobacter racemifer; 1.044693121 1.028490652 0.967865766 1.063248607 0.964166712 0.993330861 0.997067357 1.025941372 1.034839045 1.013846749 0.973862075 1.021834098 0.947747982 0.9643375 0.897591343 0.968907482 1.044593017 1.034777471 114539427 fthfs Fulvimarina pelagi HTCC2506 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Fulvimarina;species:Fulvimarina pelagi; 0.885293872 0.936165415 0.921758066 0.891757625 0.887605647 0.896331624 0.857767117 0.879578287 0.885919952 0.926985416 0.944327081 0.935914997 0.877230669 0.832205217 0.833360806 0.915065928 0.955592205 110598809 dsra Chlorobium ferrooxidans DSM 13031 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium ferrooxidans; 0.793063514 0.863717054 0.813292 0.814589797 0.813743707 0.829600988 0.805357486 0.814861634 0.835225956 0.835516037 31338549 one_ring_23diox Ralstonia sp. B15 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 0.897839019 0.877328236 0.908061253 0.889588266 0.912844395 0.9190534 0.871073662 0.826366833 0.874899971 0.928991424 0.853729302 0.833224506 0.875910141 0.876068287 0.879452896 0.867585637 0.888612742 0.889240525 320333221 amyA Deinococcus maricopensis DSM 21211 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus maricopensis; 0.875892118 0.916571247 0.880015732 0.886785479 0.859227144 0.866109793 0.831016479 0.869659127 0.886866201 0.8977964 0.82069293 0.863152228 0.838350153 0.84188725 0.817302601 0.83970531 0.846215648 0.843533113 375109627 terc Alishewanella jeotgali KCTC 22429 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alishewanella;species:Alishewanella jeotgali; 0.859858555 0.835382479 0.858294386 0.837662405 0.836446298 0.843651425 0.837743314 317170478 dehh109 Mesorhizobium ciceri biovar biserrulae WSM1271 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium ciceri; 1.18120318 1.12410446 1.153317928 1.17303827 1.118614746 1.179513975 1.16239191 1.17634598 1.169824124 1.130772445 1.13382852 1.148314271 1.088422137 1.076615524 1.070678972 1.089532598 1.15750183 1.118938652 7160891 nirs uncultured bacterium wC1 Nitrogen Denitrification NA superkingdom:Bacteria; 0.773591639 0.879081512 0.867381277 0.923564388 0.852576235 0.87282135 0.825010294 0.82148445 0.858966328 0.892970025 0.800845282 0.835964852 0.854136495 0.820413612 0.859633129 0.854252655 0.870516273 374321583 phytase Paenibacillus terrae HPL-003 Phosphorus Phytic acid hydrolysis NA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus terrae; 0.875939674 0.89217108 0.86759571 0.817305168 0.909278557 0.881258662 0.871100736 0.843475243 0.867725064 0.836224898 0.844044609 0.815034563 0.841210624 0.876017388 0.907067532 410154938 dehh109 Glaciecola mesophila KMM 241 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Glaciecola;species:Glaciecola mesophila; 0.84702774 0.834851746 0.854729541 0.830440563 0.811081982 0.820021206 71021981 p450aro Ustilago maydis 521 Organic Remediation Aromatics polycyclic aromatics superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Ustilaginomycetes;order:Ustilaginales;family:Ustilaginaceae;genus:Ustilago;species:Ustilago maydis; 0.889678025 0.982893177 1.090423563 1.022740307 1.059884227 0.911927933 1.002265354 0.87438439 0.932002003 1.153743383 1.115235349 1.084745491 1.077554721 1.049060242 1.10511394 1.052776988 0.914343895 1.023449665 33634768 Sir Prochlorococcus marinus str. MIT 9313 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Cyanobacteria;order:Prochlorales;family:Prochlorococcaceae;genus:Prochlorococcus;species:Prochlorococcus marinus; 0.834210562 0.837080809 0.81283457 0.864246104 0.872309955 0.836242606 0.911282382 0.932488507 0.853134026 0.910844421 0.814043427 259652643 TIM Aromatoleum aromaticum EbN1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 0.773254789 0.834902584 0.923214664 0.810097301 0.819457338 0.859827954 0.814900113 0.808379194 288943522 TIM Thioalkalivibrio sp. K90mix Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio; 0.89349219 0.875866628 0.816044416 0.9090474 0.808551769 0.887664552 0.833191719 0.901726149 0.896365617 0.83003318 0.846839009 0.839466427 0.835742389 0.927967578 0.879046435 14423343 mult_ring_12DiOx Burkholderia sp. DBT1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 0.871400677 0.869555306 0.905339132 0.935559742 0.934510546 0.885278589 0.90499485 0.93555243 0.952871889 0.901440732 0.891915182 0.918353391 0.827695713 0.87903137 0.875821353 0.90893594 0.914896752 0.902329683 333749662 bphF1 Desulfotomaculum carboxydivorans CO-1-SRB Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum carboxydivorans; 0.83632307 0.868116936 0.86867382 0.900059068 0.834178964 0.891894706 0.814624709 0.809013459 0.86289369 0.917439651 0.840350216 0.83278354 0.793321609 0.837730091 0.856097273 0.832530656 323470932 one_ring_12diox Arthrobacter phenanthrenivorans Sphe3 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter phenanthrenivorans; 0.815567567 0.854226418 0.840915126 0.823396687 0.835308464 359418969 cellobiase Gordonia araii NBRC 100433 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia araii; 0.786995747 0.811830601 183226617 badh Lactobacillus fermentum IFO 3956 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus fermentum; 0.839138881 0.847435811 0.833019242 0.863677484 0.896259434 0.880120702 0.902532202 0.863516384 0.851572886 0.847080886 0.855239465 0.847680995 0.900072718 77378743 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.945775589 0.87216654 0.773295645 0.816715814 0.839834653 0.793158044 0.793044314 0.853363323 0.837534093 291418817 amyA Oribacterium sp. oral taxon 078 str. F0262 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Oribacterium;species:Oribacterium sp. oral taxon 078; 0.983647621 0.847349271 0.793662735 0.905813099 0.875622325 0.844811946 0.839919904 0.851308881 0.886896154 0.853786439 0.824795933 0.83937582 0.840179654 0.87517976 0.818351942 0.840513277 0.826720657 0.827836152 373852972 ara Opitutaceae bacterium TAV5 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 0.912863693 0.883720651 0.881657369 0.852941501 0.874558401 0.822498286 0.862082775 0.943810785 0.955968236 0.962034165 0.811462885 0.871604748 0.86117572 0.816624139 0.799434119 0.925039999 0.868983063 0.92335291 98975756 amyA Sphingopyxis alaskensis RB2256 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingopyxis;species:Sphingopyxis alaskensis; 0.944774177 0.957529243 0.925243002 1.01037691 0.940872356 0.986053661 0.939953221 0.955988669 0.924613159 0.963738403 0.934720888 0.953449979 0.984032302 0.94001074 0.936483184 0.955856115 0.966072545 0.938583814 159128506 lactase_fungi Aspergillus fumigatus A1163 Carbon Cycling Carbon degradation Lactose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus fumigatus; 1.192468119 1.158087837 1.156557331 1.18165752 1.140758104 1.183615771 1.150019693 1.181913636 1.175978959 1.165252665 1.138146498 1.163093412 1.111008504 1.108309885 1.06859436 1.120250276 1.18986523 1.130664485 320106919 ara Terriglobus saanensis SP1PR4 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Terriglobus;species:Terriglobus saanensis; 0.948446988 0.93242678 0.843645584 0.82815263 0.973702465 1.049075641 0.900901339 0.818359257 0.828583826 1.051677619 0.935851625 0.862983067 0.983144298 1.007801706 0.873603322 0.905054014 0.991576803 0.955750157 112462695 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.200403723 1.216284431 1.185249391 1.193966882 1.154882017 1.229315217 1.170100892 1.203475511 1.15604108 1.185619638 1.172866755 1.166143423 1.138215425 1.168603525 1.150004992 1.134203908 1.168809821 1.188509587 240008799 cysJ Methylobacterium extorquens AM1 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium extorquens; 0.868739434 0.849557351 0.832934287 0.906209134 0.835276713 0.869065816 0.836877744 0.873285319 0.880597963 0.867344115 0.880659894 0.836833309 0.849333594 0.870065272 330469889 amyA Verrucosispora maris AB-18-032 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Verrucosispora;species:Verrucosispora maris; 1.176636902 1.167447168 1.126372284 1.136907693 1.145881955 1.14713846 1.127567621 1.138476999 1.140219161 1.168787942 1.149306055 1.170215471 1.104947863 1.130064817 1.117152932 1.111438795 1.162479632 1.153982628 318040336 ppx Synechococcus sp. CB0101 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 0.950797047 0.948413102 1.007618354 0.972189773 0.971633398 0.978100702 1.001859686 0.963920611 0.955420091 0.983014758 0.884527217 0.964927101 0.895994945 0.905891456 0.815765918 0.859689935 0.932049026 0.961173862 315178646 CsoS1_CcmK Vibrio furnissii NCTC 11218 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio furnissii; 1.094223924 1.034446868 1.019081606 1.082322648 1.024640669 1.044014846 0.992768118 1.049561286 1.058967791 1.014284679 1.049750277 1.032381235 1.005360966 1.012016765 0.995060545 1.007495709 1.089591786 1.004738212 5139555 pcag Streptomyces coelicolor A3(2) Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 1.26615326 1.270546342 1.229488997 1.239684375 1.237742535 1.272938867 1.212191535 1.242306488 1.21561231 1.255758944 1.207204324 1.245341045 1.227904609 1.220864253 1.200571156 1.229249972 1.25280827 1.257726413 253998612 fccab Methylovorus sp. SIP3-4 Sulfur Sulfide Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Methylophilales;family:Methylophilaceae;genus:Methylovorus;species:Methylovorus glucosotrophus; 0.905026658 0.870223939 0.795649388 0.899348628 0.918960812 0.843791456 0.902038962 0.90571922 0.884196659 0.818194406 0.851824721 0.812296474 0.840877671 0.867523256 296116110 mdlc Gluconacetobacter hansenii ATCC 23769 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter hansenii; 0.888139937 0.877802669 0.860480347 0.895175052 0.805651831 0.903886939 0.876831682 0.876715839 0.901866034 0.909221075 0.846005747 0.867572227 0.823992391 0.847397657 0.857104697 0.897457784 0.893756464 25900764 fthfs uncultured bacterium Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria; 0.851147408 0.832956314 0.894099342 0.873551531 0.794170796 0.850707035 0.887117934 0.834485458 0.861351819 0.832096636 380714489 cara Caulobacter sp. OC10 Organic Remediation Aromatics Heterocyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 1.090694228 1.066949523 1.070008075 1.110170078 1.057209249 1.064664196 1.041705806 1.072466364 1.064554889 1.042536089 1.093301596 1.062271992 1.037176093 1.033216065 1.005378981 1.048291954 1.049796261 1.054586149 222543222 phytase uncultured bacterium Phosphorus Phytic acid hydrolysis NA superkingdom:Bacteria; 1.002713145 0.994704074 0.98845546 0.968260738 0.947359801 0.971084972 0.913865304 0.962587195 0.969670811 0.964512221 0.95043838 0.962591722 0.984249716 0.989330657 0.960683366 0.944468845 0.975230256 0.972777046 142230 cellobiase Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium; 0.93682065 0.90949936 0.898245036 0.9645025 0.901705226 0.944784109 0.910198135 0.914817666 0.905338249 0.911907257 0.902886604 0.956008585 0.859470897 0.890431101 0.844672958 0.844541161 0.955547373 0.937190458 319742582 nirk Lautropia mirabilis ATCC 51599 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Lautropia;species:Lautropia mirabilis; 1.02628916 1.052354817 1.086663109 1.023698087 1.132473537 1.126754554 1.054876328 1.053903381 1.030127514 1.063560352 1.072927443 1.04754136 1.031165766 1.108838965 1.089315692 1.054982597 1.108992493 1.121845379 184197560 PRK Burkholderia phymatum STM815 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 1.606537271 1.560165304 1.586482258 1.597367859 1.583335498 1.6042707 1.577280748 1.623210012 1.583083165 1.555940168 1.574084695 1.59700843 1.560087814 1.521858218 1.572125248 1.574659989 1.575584231 1.522075967 329847348 acetylglucosaminidase Asticcacaulis biprosthecum C19 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis biprosthecium; 0.971304494 0.964860374 0.967546168 0.945982598 0.972684913 0.972581779 1.00754024 0.977672495 0.945400044 0.951811454 0.983715298 0.959014096 0.935166169 0.911649845 0.885557934 0.914914754 0.962456648 0.988647083 151302227 aps_apra Desulfococcus oleovorans Hxd3 Sulfur adenylylsulfate reductase NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfococcus;species:Desulfococcus oleovorans; 0.914908818 0.885848996 0.931387931 0.886973616 0.913642939 0.87815863 0.866150902 0.86183275 0.878029974 0.884729424 0.881111575 0.897407694 0.883240536 0.829562543 0.880802329 0.794978434 0.920880972 0.925193457 218673552 endoglucanase Rhizobium etli GR56 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 1.160885258 1.15136359 1.124821493 1.118382575 1.128176194 1.15515286 1.119342818 1.126769566 1.130705561 1.145274787 1.115182475 1.140154305 1.096402766 1.118210347 1.058679117 1.117284198 1.123255855 1.137664274 339480793 ppx Leuconostoc pseudomesenteroides KCTC 3652 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Leuconostocaceae;genus:Leuconostoc;species:Leuconostoc pseudomesenteroides; 0.854998859 0.828565856 354958788 linb Bradyrhizobium japonicum USDA 6 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 0.880276193 0.880025768 0.837803166 0.893415243 0.823997716 0.850368947 0.899996209 0.894784554 0.831288273 0.914756382 0.908637034 0.823466573 0.810894862 0.847479848 0.868355166 0.845930319 0.857965902 261212119 chitinase Vibrio sp. RC341 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 0.776630626 0.850391895 0.87354277 0.803905137 0.826855547 0.802111472 0.825527073 0.820779266 0.835493398 0.846281005 113732397 tfda Caulobacter sp. K31 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 0.862513506 0.85048818 0.825324842 0.831423028 0.877265792 0.929930151 0.881468222 0.932373924 0.994233889 291612867 glucoamylase Sideroxydans lithotrophicus ES-1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Gallionellales;family:Gallionellaceae;genus:Sideroxydans;species:Sideroxydans lithotrophicus; 0.809431062 0.814743261 347580930 mdlc Gluconacetobacter xylinus NBRC 3288 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter xylinus; 0.915641317 0.922214154 0.909146015 0.932929803 0.948061931 0.931532513 0.921479066 0.95523579 0.929566508 0.875952743 0.927107691 0.902122406 0.894067278 0.890836696 0.862091674 0.844312346 0.888250086 0.945599367 41407685 amyA Mycobacterium avium subsp. paratuberculosis K-10 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 1.063361825 1.054579365 1.058186335 1.066148692 1.039381983 1.038702635 1.002907053 1.053755817 1.070885918 1.046655773 1.028152736 1.043236697 1.024250508 1.02206394 0.994141743 1.028308765 1.046510169 1.025985292 345112851 amyA Rhodothermus marinus SG0.5JP17-172 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;order:Bacteroidetes Order II. Incertae sedis;family:Rhodothermaceae;genus:Rhodothermus;species:Rhodothermus marinus; 1.126381354 1.133683523 1.116135672 1.159117609 1.126457619 1.155896974 1.090252774 1.117825491 1.134529283 1.118820684 1.087106435 1.122011051 1.105026199 1.09410998 1.055395484 1.122159303 1.18182191 1.10597254 169759883 xyll Pseudomonas putida W619 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 0.991594046 0.976451911 0.98674144 1.03500267 0.983247266 1.012554742 0.987389523 0.990951815 1.014525489 0.989602836 0.977041491 0.969930904 0.933793572 0.918232167 0.926168136 0.92699325 1.049192303 0.989357695 151302117 aps_apra Archaeoglobus veneficus Sulfur adenylylsulfate reductase NA superkingdom:Archaea;phylum:Euryarchaeota;class:Archaeoglobi;order:Archaeoglobales;family:Archaeoglobaceae;genus:Archaeoglobus; 0.886020905 0.861115995 0.809557133 0.848900684 0.827230581 0.809063715 0.864081699 0.86222878 0.861443489 0.825164559 0.873346707 0.868103599 33284730 chitinase Salinivibrio costicola Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Salinivibrio; 0.91094002 0.855824841 0.905790027 0.960162947 0.837202023 0.839604139 0.855986762 0.915017233 0.835602348 0.842532162 0.840589898 0.846716993 0.88250562 0.85974859 284448060 nitrate_reductase uncultured eukaryote Nitrogen N Assimilation NA superkingdom:Eukaryota; 0.803713654 0.858814831 0.869276437 0.884884305 0.872787375 0.841832125 0.876270885 0.875352544 0.840774079 0.822706471 0.819646155 0.851384505 0.893620168 0.840342563 88814824 amyA marine actinobacterium PHSC20C1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria; 0.860147249 0.805087375 0.91605697 0.826321494 0.927117044 0.921880115 0.857072391 0.83752022 0.856901506 0.918380485 0.952227165 0.935329528 0.890973122 0.889146974 0.95392139 0.927600818 0.983256862 0.987298118 158109539 pectinase (pectate_lyase) Frankia sp. EAN1pec Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 0.887979351 0.896913395 0.870406351 0.903332577 0.884064025 0.865678487 0.904727014 0.908614126 0.865354329 0.877664973 0.865051188 0.895989137 0.844095617 0.850032671 0.815440625 0.882716529 0.927345134 85373522 linb Erythrobacter litoralis HTCC2594 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter;species:Erythrobacter litoralis; 1.050202123 1.041149057 1.049747428 1.036478465 1.018868008 1.013375575 0.992354807 1.028629211 1.041531054 1.045574241 1.030029651 1.053900828 0.997998777 0.983126264 0.965513887 0.975252906 1.050780103 1.027775539 90337528 soxY Aurantimonas sp. SI85-9A1 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Aurantimonas;species:Aurantimonas manganoxydans; 1.019948201 1.030070385 0.948644905 1.06550586 0.95158059 1.033612808 0.970926002 1.019158085 1.006912172 1.006777205 0.967071562 1.007885076 0.958549405 0.953601463 0.946691083 0.961499581 1.055204024 1.008364561 6778709 dsra uncultured sulfate-reducer HMS-4 Sulfur sulfite reduction NA 1.076171841 1.071958781 1.037822155 1.030571451 1.012688383 1.049130081 1.000408424 1.041723914 1.018839425 1.020296931 1.011094848 1.031815064 0.991688927 1.007783616 0.968614772 1.001719461 1.078044126 1.078887867 381166497 arsc Phaeospirillum molischianum DSM 120 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Phaeospirillum;species:Phaeospirillum molischianum; 0.982602733 0.935501963 0.934773115 0.920184661 0.90975627 0.938161086 0.915830424 0.917606883 0.955884173 0.936771208 0.89747955 0.935738041 0.888739953 0.947729477 0.871555751 0.935507002 0.975171562 0.977861324 39725457 badh Streptomyces parvulus Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 0.891379947 0.86728889 0.892249877 0.912918306 0.883103362 0.916781179 0.928456507 0.876739955 0.931069232 0.934871501 0.907669781 0.91170539 0.8933683 0.919862392 0.916031619 0.903834362 0.903655644 0.885322269 91684641 rubisco Rhodopseudomonas palustris BisB5 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 1.312829543 1.26917425 1.280833842 1.304062654 1.266140581 1.290659661 1.258281822 1.292840694 1.285341421 1.261216743 1.272233929 1.304250963 1.247795327 1.231115654 1.233580615 1.259332172 1.298611937 1.252747453 160917767 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.061223848 1.035534299 1.046823472 1.009142901 1.04281593 1.064030287 0.97128695 1.003891769 1.007153519 1.004728336 0.981134255 0.982436769 0.995143312 1.015334204 1.012078554 0.974475987 1.041743802 1.046872601 145558153 fccab Rhodobacter sphaeroides ATCC 17025 Sulfur Sulfide Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 1.338391157 1.319433542 1.305103539 1.323739129 1.280425211 1.322893489 1.294142175 1.306969754 1.303480366 1.297103148 1.299010656 1.311473681 1.250116529 1.242096245 1.206681348 1.278142734 1.305664063 1.262242542 124899078 exochitinase Burkholderia dolosa AUO158 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia dolosa; 0.82388502 0.793742559 0.833550265 0.813071819 0.803830453 0.815913698 0.834499094 0.86696032 0.822688242 0.85590387 359409512 FBP_aldolase SAR116 cluster alpha proteobacterium HIMB100 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 0.865462126 0.862780648 0.855311002 0.877390723 0.845966978 0.875559798 0.890549854 0.867915722 0.897781659 0.908833596 0.871372059 0.90059767 0.783405625 0.84393868 0.860612259 0.899524271 0.916268322 328942102 chitinase Paenibacillus sp. HGF5 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 0.918922984 0.910933371 0.945890657 0.91517792 0.951561289 0.963058032 0.91142849 0.904130655 0.949868327 0.919651065 0.849983543 0.87433364 0.900775331 0.941195468 0.895606906 0.914519592 1.117641485 0.950947055 228561681 aps_apra Desulfomicrobium baculatum DSM 4028 Sulfur adenylylsulfate reductase NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfomicrobiaceae;genus:Desulfomicrobium;species:Desulfomicrobium baculatum; 1.073190956 0.808224104 356642534 dsra Pyrobaculum sp. 1860 Sulfur sulfite reduction NA superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum; 1.006684194 0.935296253 0.898675902 0.944706443 0.948443178 0.909872856 0.945670355 0.915828235 0.963456939 0.999408055 0.914433925 0.934088036 0.883879931 0.976689717 0.897169913 0.926084668 0.92258006 0.932371872 390564734 linc Nitrolancetus hollandicus Lb Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Chloroflexi;class:Thermomicrobia;order:Sphaerobacterales;family:Sphaerobacteraceae;genus:Nitrolancetus;species:Nitrolancetus hollandicus; 0.809681834 0.798136263 0.803956228 0.832044935 126731646 pcpe Sagittula stellata E-37 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 0.849490406 0.895875171 0.918259198 0.907942869 0.91519222 0.890603974 0.910299042 0.872360774 0.869850836 0.910695806 0.906811815 0.891037822 0.809501316 0.8641881 0.819724331 0.881808303 0.956521937 129279052 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 1.128845693 1.193499379 1.180895062 1.20356731 1.187395775 1.162410864 1.181036027 1.128241009 1.168350161 1.16827635 1.163003989 1.20629691 1.12673388 1.10538673 1.085116715 1.153198372 1.079477691 1.138103227 297551454 linb Ktedonobacter racemifer DSM 44963 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Chloroflexi;class:Ktedonobacteria;order:Ktedonobacterales;family:Ktedonobacteraceae;genus:Ktedonobacter;species:Ktedonobacter racemifer; 1.266529987 1.202803795 1.233025152 1.190025717 1.191401176 1.215534069 1.149190768 1.176874119 1.192201321 1.150334273 1.228364212 1.226069406 1.179287718 1.143428636 1.190844981 1.194596982 1.270606394 1.203801947 111022764 bphF1 Rhodococcus sp. RHA1 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 0.976824458 1.025540279 0.986105153 0.985659334 0.974860661 1.04116344 1.005580944 0.984246418 0.95741462 1.003264375 0.99086868 1.007057694 0.999262064 1.007393601 0.96570414 1.00524745 0.984151413 1.016235066 289615303 phospholipase_C_fungi Sordaria macrospora Carbon Cycling Carbon degradation Phospholipids superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Sordaria; 0.936375511 0.957695795 0.981177032 0.985657577 1.004567069 1.020923863 1.024507179 1.030999951 0.964699918 0.997610032 1.008823013 1.001029593 0.94049821 0.908580994 0.921968337 0.937855423 0.97502926 1.013203479 121609909 phn Verminephrobacter eiseniae EF01-2 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 1.13067069 1.116294469 1.113436834 1.083430578 1.038933981 1.105311687 0.966176985 1.018036757 1.122313287 1.078660012 1.064256001 1.060770265 1.03988481 1.017094136 0.957578618 1.022307825 1.12697534 1.080888269 327543193 ccmL Rhodopirellula baltica WH47 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Rhodopirellula;species:Rhodopirellula baltica; 1.055303105 1.088684462 1.01747423 1.02792414 1.042179302 1.064772488 0.991685383 0.996276225 1.037854013 1.043339177 1.027755782 1.037932544 1.025818408 1.015036667 0.957039126 0.993830424 1.047932256 1.042442296 320095053 xyla Actinomyces sp. oral taxon 178 str. F0338 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 178; 1.24873032 1.20837236 1.226989832 1.263263687 1.25455997 1.182469972 1.210300054 1.204870161 1.259588263 1.240928204 1.235301143 1.271322709 1.188681319 1.157266268 1.189026754 1.172352933 1.213640697 1.206351468 285019789 pcag Xanthomonas albilineans GPE PC73 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas albilineans; 1.172128403 1.082578815 1.084465679 1.077368802 1.057905142 1.094547393 1.038870109 1.04882148 1.062753494 1.043068343 1.062307565 1.065388798 1.035716454 1.021629041 1.011616242 1.045309972 1.078080302 1.088154638 358640196 tktA Azoarcus sp. KH32C Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 1.101379812 1.068023939 1.080103002 1.129960257 1.077778114 1.099094801 1.097945886 1.10844084 1.100960075 1.102560222 1.095447156 1.110194246 1.066437571 1.04545755 1.047256064 1.05977599 1.111130151 1.062411548 218319114 bphb Ralstonia sp. Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 0.778289824 0.824978306 0.796433418 0.807896754 0.783527654 0.801705803 0.888764564 0.789414326 0.784129635 0.793906749 388463430 arsc Planococcus antarcticus DSM 14505 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Planococcaceae;genus:Planococcus;species:Planococcus antarcticus; 0.883627539 0.829012369 0.83875648 0.841313178 0.851394762 0.860550418 0.844423454 0.860929099 0.844248929 0.841707312 0.863615725 0.8082745 0.845707642 0.844128712 0.846636573 110819318 xylc Rhodococcus sp. RHA1 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 0.840373695 0.846652553 27351195 chnb Bradyrhizobium japonicum USDA 110 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 0.87091976 0.93901988 0.840087623 0.863914211 0.850460895 0.891123519 0.847124582 0.81799201 0.841156545 0.928233697 315498399 pme Asticcacaulis excentricus CB 48 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis excentricus; 0.791580669 0.797040658 0.785853809 0.794976928 0.804572409 0.7837656 379989021 dsrB uncultured bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.139953827 1.123838269 1.139533593 1.143494862 1.142656495 1.152608536 1.127776808 1.147373815 1.15956782 1.135185409 1.154079836 1.137978554 1.101857011 1.06789602 1.040718864 1.087821319 1.180986863 1.110863876 116249158 nahf Rhizobium leguminosarum bv. viciae 3841 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 0.943586021 0.937684306 0.86309934 0.924870796 0.889461317 0.914051539 0.851184706 0.918232408 0.946794509 0.930675492 0.881421684 0.901616957 0.860145567 0.928735324 0.812686993 0.83104858 0.939465701 0.900734226 295700301 mhpc Burkholderia sp. CCGE1002 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 0.853874459 0.805689878 0.84285769 0.805713367 0.805872641 0.812684196 0.821256918 0.876432201 0.823682175 0.870654656 345808640 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.073634993 1.113498907 1.034185457 1.053298666 1.020457975 1.10010169 0.999060309 1.006177129 1.045451589 1.040133558 1.032423353 1.038506815 1.031129974 0.998199859 0.973336154 1.046556103 1.097271021 1.065568826 170116763 pme_Cdeg Laccaria bicolor S238N-H82 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Tricholomataceae;genus:Laccaria;species:Laccaria bicolor; 1.052157511 1.059840776 1.044374845 1.083088208 1.07579524 1.067671527 1.03657519 1.057254286 1.046277513 1.070102288 1.065164031 1.072262868 1.05134982 1.028916681 1.014124508 1.045761454 1.052168273 1.060728779 187426692 chitinase Akkermansia muciniphila ATCC BAA-835 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobiaceae;genus:Akkermansia;species:Akkermansia muciniphila; 0.887116749 0.8883172 0.900414701 0.920828969 0.914915421 0.888849572 0.899334021 0.949853439 0.897701185 0.93547689 0.884546173 0.92709901 0.903045525 0.876610015 0.916337783 0.906009334 0.845594935 0.91044042 365290643 exaa(moxf) Bradyrhizobium sp. ORS 375 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.944082558 0.966326368 0.857762486 0.93269574 0.818609637 0.926451253 0.847647679 0.906578811 0.93382023 0.92179451 0.886451366 0.894225811 0.832290946 0.913812062 0.875248257 0.869606738 0.981481473 18034255 aps_apra Desulfotomaculum thermobenzoicum Sulfur adenylylsulfate reductase NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum; 1.081681113 1.053807701 1.030081432 1.045463568 1.055565748 1.045363726 1.028190874 1.038294353 1.032862799 1.042003392 0.998987713 1.041050473 0.984995973 1.009133409 0.970010411 0.966534278 1.055180464 1.080816256 320105585 acetylglucosaminidase Terriglobus saanensis SP1PR4 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Terriglobus;species:Terriglobus saanensis; 0.799872673 0.89816524 0.865429049 0.85574547 0.840063972 0.893086208 282948934 narg Citrobacter rodentium ICC168 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter rodentium; 0.861440757 0.832481778 0.82179034 0.852864931 0.840813482 0.887850319 0.82138265 0.844822146 0.878426901 0.826047166 0.897419202 0.844557958 0.993585037 0.837835619 0.845211873 0.879770618 27378647 fcba Bradyrhizobium japonicum USDA 110 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 1.121752394 1.068952608 1.072847948 1.119301196 1.061187075 1.042655609 1.071578697 1.076734128 1.089447926 1.075601116 1.050756481 1.081301279 1.028395629 1.040580668 1.044685976 1.03573257 1.098605338 1.078826929 316981094 nirk uncultured proteobacterium Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria; 0.950322576 0.939211206 0.951307404 0.963201363 0.869267492 0.935719037 0.882787355 0.920258256 0.934132986 0.931974104 0.907952075 0.913232073 0.905331019 0.900188439 0.89880685 0.938576474 0.938393465 0.955360885 158329959 hbh Azorhizobium caulinodans ORS 571 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Azorhizobium;species:Azorhizobium caulinodans; 0.936255692 0.906929838 0.884073937 0.951274315 0.868882597 0.906224488 0.927085772 0.947073652 0.920933994 0.88063165 0.875708437 0.907746336 0.871003301 0.797725406 0.843813496 0.831656483 0.903052889 0.93137304 353221796 xylj Saccharomonospora paurometabolica YIM 90007 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora paurometabolica; 0.846843244 0.797574849 0.817231029 0.80325639 398789046 vgb Streptomyces auratus AGR0001 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces auratus; 1.110448012 1.081861689 1.081208519 1.101550254 1.038474541 1.12292329 1.067947735 1.09547424 1.079214048 1.064709306 1.054356835 1.083345889 1.024076147 1.048802643 1.002781637 1.033586634 1.107307297 1.116038238 292656015 pme Haloferax volcanii DS2 Carbon Cycling Carbon degradation Pectin superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloferax;species:Haloferax volcanii; 1.166858022 1.123961678 1.104962685 1.080775265 1.067408624 1.118680871 1.069163207 1.130236318 1.095833526 1.095749563 1.071748023 1.065968974 1.067352596 1.066310694 0.992839371 1.035917878 1.096345671 1.115091134 345302844 amyA Rhodothermus marinus SG0.5JP17-172 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;order:Bacteroidetes Order II. Incertae sedis;family:Rhodothermaceae;genus:Rhodothermus;species:Rhodothermus marinus; 0.833676243 1.035722254 0.825028678 0.778999898 0.82538823 0.792638058 0.836132669 0.848390171 0.805155441 0.859580344 153962964 sqr uncultured bacterium Sulfur Sulfide Oxidation NA superkingdom:Bacteria; 1.397024465 1.346530019 1.346995492 1.35910912 1.357331115 1.364391979 1.327055162 1.328949037 1.353996106 1.32513248 1.324618726 1.352136438 1.349687945 1.295619629 1.351422301 1.314106566 1.395981636 1.342335769 116672618 cmci Arthrobacter sp. FB24 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 1.004843643 1.027129902 1.001755423 0.9876175 0.976136975 0.998892097 0.949775627 0.937091613 1.0029719 0.973723805 0.981869158 0.968281958 0.962186776 0.9306181 0.937268003 0.920569143 1.01900011 1.010821894 189008016 pmoa uncultured bacterium Carbon Cycling Methane Methane oxidation superkingdom:Bacteria; 0.856858373 0.805997527 0.805854966 0.86511784 0.853150269 0.833670939 0.810705412 0.832005563 0.825384421 0.815288501 0.820695326 0.817385335 0.880970657 0.840090335 211905621 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.779342968 0.833028807 0.851071287 0.798693075 0.845406731 0.811012757 0.812652586 0.835917822 0.789028725 0.831690004 0.835403729 0.825108618 209486081 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.841988201 0.811205253 0.805659351 0.847889703 0.80731786 0.803323264 0.802905482 0.81170099 0.841117872 0.899229477 0.875061867 0.858321483 0.84667007 0.860230477 0.82128947 0.817346551 0.877615334 0.889382599 298249513 urec Ktedonobacter racemifer DSM 44963 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Chloroflexi;class:Ktedonobacteria;order:Ktedonobacterales;family:Ktedonobacteraceae;genus:Ktedonobacter;species:Ktedonobacter racemifer; 1.01652354 1.033821002 0.989384514 1.022015888 1.000377524 1.069734034 0.968216125 0.973121744 0.973653877 1.000573765 0.989459827 1.007982382 0.976547049 1.004370686 0.927500417 1.015349317 1.011574848 1.034514683 149783415 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.952093681 0.975326021 0.943273756 0.97012793 0.953212442 1.005380272 0.945623248 0.929071421 0.959439066 0.929547946 0.947824266 0.95583557 0.920281355 0.918058522 0.95607613 0.937794749 0.959107103 0.953648639 229323403 alkb Rhodococcus erythropolis SK121 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 1.000570269 1.048834783 1.018392145 0.967542343 1.028699826 0.977185452 0.973825235 0.969177483 0.984019622 0.978462211 0.972778873 0.968709135 0.957935338 0.947873617 0.993628828 0.914484679 0.957488857 0.959249617 197721741 exochitinase Streptomyces pristinaespiralis ATCC 25486 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces pristinaespiralis; 0.798181655 0.876299662 0.777326259 0.840725006 379708723 narg Nocardia cyriacigeorgica GUH-2 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia cyriacigeorgica; 0.785812904 0.808162499 327316352 amyA Archaeoglobus veneficus SNP6 Carbon Cycling Carbon degradation Starch superkingdom:Archaea;phylum:Euryarchaeota;class:Archaeoglobi;order:Archaeoglobales;family:Archaeoglobaceae;genus:Archaeoglobus;species:Archaeoglobus veneficus; 0.88481051 0.848276987 0.864359292 0.930691277 0.833951874 0.798595993 0.837795874 0.873431423 0.905004488 0.852082287 0.823925438 0.858797964 0.812272908 0.83797755 0.841091689 0.890365819 0.891139864 114799609 phdk Hyphomonas neptunium ATCC 15444 Organic Remediation Polycyclic aromatics NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Hyphomonas;species:Hyphomonas neptunium; 0.892796571 0.825142528 0.874690746 0.862873804 0.852312522 0.844018498 0.826665993 0.858188938 0.872497456 0.854271352 0.854222911 0.831351259 0.836783408 0.872381955 330809264 ppx Pseudomonas brassicacearum subsp. brassicacearum NFM421 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas brassicacearum; 1.168503745 1.042371985 1.048822596 1.015270037 1.017449471 1.089163482 0.990494423 1.027078127 1.000610728 1.073550269 1.030036957 1.009857023 1.047662485 1.015634933 0.955509414 0.994905948 0.995246871 1.051259789 222082141 narb Agrobacterium radiobacter K84 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 1.226892395 1.178908133 1.164318169 1.214998593 1.157449273 1.196650935 1.177997333 1.194729692 1.199119576 1.163328608 1.166495931 1.193070593 1.16297021 1.133633165 1.156972367 1.158707968 1.246616775 1.15111336 116634745 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.932937169 0.86420919 0.915642901 0.996015518 0.891528639 0.882653778 0.947585597 0.911540631 0.950091812 0.925666883 0.901082276 0.921022376 0.894784798 0.866621777 0.893862426 0.875923524 0.950804444 0.864448711 297559672 amyA Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Nocardiopsis;species:Nocardiopsis dassonvillei; 1.401399937 1.355066262 1.370361441 1.365492547 1.353950932 1.382461978 1.36483872 1.361662779 1.350894256 1.341451017 1.360910964 1.366568893 1.352583369 1.299728616 1.309716477 1.331118405 1.382681519 1.333169389 374922785 arra uncultured bacterium Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 0.982960269 0.958851572 0.988692696 0.984056603 1.001348557 0.977750484 0.980200634 0.995033547 0.978926959 0.999095015 0.968448675 0.965849773 0.932319596 0.966152014 0.891596027 0.892851835 0.999166789 0.964466576 365259649 fthfs Actinomyces graevenitzii C83 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces graevenitzii; 0.922869957 0.94328569 0.876322021 0.938426639 0.872506286 0.936445532 0.843278604 0.921503524 0.898775672 0.919207691 0.87265989 0.905993101 0.861277802 0.872340015 0.836126838 0.903740455 0.94716403 0.919007898 327463660 cysI Neisseria bacilliformis ATCC BAA-1200 Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria bacilliformis; 1.472909452 1.43785966 1.415235266 1.44408931 1.416159563 1.472145705 1.422047505 1.444641079 1.41012235 1.409362078 1.429926072 1.421976341 1.408347639 1.371814929 1.351789542 1.403117738 1.47027349 1.393817268 157272184 amyA Actinoplanes sp. SN223/29 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes; 0.91844789 0.916870745 0.868282969 0.8666475 0.877740018 0.908899253 0.915524345 0.86970464 0.880805311 0.891737743 0.797177257 0.876002143 0.800490957 0.814615208 0.824621702 0.824881712 0.920708033 114227995 cara Alkalilimnicola ehrlichei MLHE-1 Organic Remediation Aromatics Heterocyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Alkalilimnicola;species:Alkalilimnicola ehrlichii; 1.001041508 0.982746603 0.986069234 0.994209177 0.992429817 1.013832374 0.960635228 0.992538861 0.975166191 0.987122942 0.982020481 0.984624391 0.990953647 0.978914953 0.982843723 0.985755665 1.01036183 1.00858741 284821835 dsrB uncultured bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.290481747 1.263799761 1.251250489 1.277410962 1.258447974 1.287298193 1.246059866 1.251084701 1.264248916 1.241820359 1.243398661 1.265834384 1.248134542 1.225661291 1.244178624 1.247294462 1.312701552 1.264399958 302541933 ben_bcla Streptomyces hygroscopicus ATCC 53653 virulence NA NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces himastatinicus; 1.086591207 1.078865421 1.09091624 1.097179847 1.043464527 1.09880198 1.024436291 1.052447562 1.072843211 1.071166717 1.048716894 1.078572447 1.025656261 1.047271684 1.003070488 1.061441282 1.099430182 1.075113876 398097629 B_lactamase_A Herbaspirillum sp. CF444 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herbaspirillum; 1.177171431 1.115003429 1.127693598 1.10809642 1.093019673 1.106952606 1.034818904 1.143995538 1.104963113 1.075381558 1.045709113 1.060251975 1.098488168 1.066827944 1.094086764 1.064321145 1.185328163 1.099040311 384574729 amyA Vibrio tubiashii NCIMB 1337 = ATCC 19106 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio tubiashii; 0.850722135 0.846083869 0.858467464 0.838745214 0.887901388 0.817709019 0.822491922 0.869260048 0.842251021 0.874159497 0.843373811 0.845099537 0.805176212 0.8494168 0.859865364 343967318 ppx Neisseria weaveri ATCC 51223 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria weaveri; 0.951798769 0.939168817 0.934043465 0.920775995 0.916561738 0.983538016 0.928170984 0.847205571 0.95263385 0.943122093 1.007234592 0.878361868 0.845108623 0.889510738 0.941877012 0.883215984 0.96029243 0.976637593 46109842 alpha_galactosidase_fungi Gibberella zeae PH-1 Carbon Cycling Carbon degradation Other superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Gibberella;species:Gibberella zeae; 0.814935418 0.801584449 0.818948463 0.803396662 0.825376204 386016705 ppk Pantoea ananatis AJ13355 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea;species:Pantoea ananatis; 1.045192703 1.039410134 1.011147425 1.078715845 1.002061045 1.012477485 1.018606144 1.047673523 1.045736486 1.014688994 0.982585072 1.037428489 0.964778172 0.981489021 0.973129336 0.996965727 1.017789525 1.029583984 363805736 one_ring_23diox uncultured bacterium Organic Remediation Aromatics Other aromatics superkingdom:Bacteria; 1.046439904 1.136557753 0.985228764 1.074351398 1.048681018 1.10933973 0.989493863 1.011217723 1.04729364 1.124595371 1.032367642 1.081739864 1.033145614 1.056336067 0.963316606 1.047517104 1.084757164 1.133800318 220926846 vana Methylobacterium nodulans ORS 2060 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 0.955684975 0.930190889 0.961756336 0.937975482 0.945318787 0.927614158 0.903809702 0.929183348 0.932810601 0.921657985 0.925217082 0.943653618 0.898720853 0.920398372 0.862178595 0.924321739 0.954342146 0.960170359 359729313 chitinase Leptospira weilii str. 2006001855 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Leptospiraceae;genus:Leptospira;species:Leptospira weilii; 0.960364614 0.940686207 0.917825166 1.008570144 0.90760748 0.958263059 0.896926163 0.939463482 0.951233228 0.936957389 0.930696175 0.962836151 0.876251955 0.890052929 0.860431915 0.917093008 0.972800792 0.951392547 84498215 amyA Janibacter sp. HTCC2649 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Janibacter; 1.1886534 1.210538524 1.177743135 1.198162261 1.194461022 1.240303397 1.180289562 1.161698617 1.165349258 1.193214255 1.188167465 1.22118435 1.183091216 1.185030737 1.16230627 1.220832352 1.184793513 1.175403641 91693341 bphc Burkholderia xenovorans LB400 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 1.06749579 1.05257481 1.044048966 1.090685528 1.029035452 1.104445709 1.056100207 1.048922293 1.043850389 1.024813763 1.017134096 1.063654318 1.011753504 0.995523979 1.069891737 1.026626699 1.078745208 1.02439613 220935354 dsrB Thioalkalivibrio sp. HL-EbGR7 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio;species:Thioalkalivibrio sulfidophilus; 0.859126275 0.968283862 0.900574316 0.902973662 0.853117198 0.817701088 0.859105391 0.860761441 0.934224273 0.924711379 0.866791995 0.928789959 0.92681127 0.825569343 0.880429272 0.952854305 0.925506564 111611319 proO Verminephrobacter eiseniae EF01-2 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 0.826939438 0.770654487 0.792443028 0.763046098 0.822951373 0.793428131 146339288 tfth Bradyrhizobium sp. ORS278 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.837939535 0.805450339 0.860731308 0.820760394 0.83411053 0.799972964 0.817147858 0.816417993 0.783519065 0.83247129 0.873815081 338802133 b_lactamase Pseudomonas stutzeri ATCC 17588 = LMG 11199 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 1.035586963 1.011981501 0.983628663 1.005277841 1.018799379 0.988893684 1.007778885 0.997706304 0.989485226 0.99820832 1.01005298 0.996375532 0.988886962 0.94247458 0.93697972 0.972209027 0.99958007 1.034835048 39646173 phytase Peniophora lycii Phosphorus Phytic acid hydrolysis NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Russulales;family:Peniophoraceae;genus:Peniophora; 1.027178349 1.019895806 1.035001714 0.995841053 0.986705206 1.029106836 0.976327391 1.054171387 1.01764392 1.039383287 0.964753651 1.004243197 0.911860799 0.981379914 0.886747767 0.955421343 0.99710307 1.059513952 110816786 cdh Rhodococcus jostii RHA1 Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 1.093335582 1.076253268 1.092211027 1.066473286 1.054261797 1.039115675 0.973860951 1.032471922 1.065841861 1.060503839 1.097707858 1.117655509 1.055201971 1.051391587 1.012113752 1.038180475 1.097629031 1.052755528 301319417 fthfs Olsenella uli DSM 7084 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Olsenella;species:Olsenella uli; 1.287348233 1.318154996 1.277296097 1.291794124 1.32835476 1.317903756 1.312945044 1.291923698 1.288122587 1.300227117 1.277543826 1.301181154 1.291599511 1.338486223 1.281512778 1.287232828 1.289482677 1.315822275 283810411 tehb Kribbella flavida DSM 17836 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Kribbella;species:Kribbella flavida; 0.83858227 0.890300291 0.839092157 0.809067179 0.845725167 83634669 endoglucanase Hahella chejuensis KCTC 2396 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Hahellaceae;genus:Hahella;species:Hahella chejuensis; 1.088556391 1.083933739 1.064808704 1.07944601 0.990402442 1.040455141 0.992485387 1.081781245 1.0797093 1.041646118 1.034394443 1.046207641 0.997729243 1.021912081 1.016216387 1.022308089 1.079483267 1.055466721 82618375 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.078371566 1.064612363 1.043380584 1.020795565 1.056891029 0.984961608 1.003478422 1.043610401 1.068933058 1.059396915 1.041526872 1.144900589 1.007299122 0.881540478 0.906290328 1.028778106 1.065823944 1.003415105 333487884 cutinase Mycobacterium sp. JDM601 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 1.365385856 1.315480522 1.309781759 1.318407217 1.310628993 1.351445911 1.313615212 1.322005522 1.32001378 1.298382896 1.325030078 1.307477268 1.314267308 1.284260307 1.26157473 1.280476248 1.352773148 1.292688191 153007680 urec Ochrobactrum anthropi ATCC 49188 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum anthropi; 0.786080106 0.843834348 0.80934317 0.805558276 0.80071084 0.873117507 0.878105334 0.778712531 0.866341264 116252599 catechol_b Rhizobium leguminosarum bv. viciae 3841 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 1.283527234 1.264934765 1.254731886 1.248986312 1.223149142 1.281083757 1.224790165 1.256551974 1.241802732 1.252594772 1.230831253 1.233351519 1.1966659 1.228092594 1.190403157 1.228203234 1.268059029 1.253555886 223585868 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.943172403 0.925213987 0.909733379 0.94681827 0.901554574 0.923433736 0.89159765 0.939632477 0.946666988 0.933412058 0.889688044 0.945253032 0.896958748 0.909615816 0.931837244 0.933769774 0.951274253 0.929923063 344040938 amyA Streptomyces violaceusniger Tu 4113 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces violaceusniger; 1.410651899 1.361693769 1.380497068 1.384160677 1.361533749 1.397327134 1.368630787 1.358333691 1.376252401 1.364959977 1.367843864 1.371155904 1.340451104 1.306713702 1.354139103 1.332417035 1.38775652 1.328004689 269979613 fthfs uncultured rumen bacterium Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria; 0.973843499 0.997549378 0.936653113 0.996373224 0.96353619 1.017752347 0.915467895 0.993252295 0.967295956 0.973575813 0.928310684 0.935522071 0.930072044 0.926787257 0.912904002 0.942862789 1.005048112 1.010923435 147886260 phenol_oxidase uncultured bacterium Carbon Cycling Carbon degradation Lignin superkingdom:Bacteria; 0.798508856 0.818371971 0.787358926 0.812366113 0.789809219 0.812384539 0.827177872 210159723 acetylglucosaminidase Collinsella stercoris DSM 13279 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Collinsella;species:Collinsella stercoris; 1.046626638 1.005374092 1.017194623 1.053579161 0.949963149 1.023245987 0.988301438 1.011133972 1.051330861 0.987573972 1.010960137 1.017849634 0.980751448 0.95443882 0.958483411 0.96553005 1.027006754 0.980428013 86570282 vana Rhodopseudomonas palustris HaA2 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 0.867057067 0.918337025 0.90216859 0.872115571 0.839047492 0.842040004 0.904225034 0.835340296 0.839536031 0.855882964 0.796646177 0.823814631 0.835063929 0.875138057 0.861353559 353208402 tehb Mesorhizobium australicum WSM2073 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium australicum; 0.875273887 0.854168615 0.894397196 0.887414981 0.79826765 0.863968955 0.803789935 0.834634701 0.895338426 0.881370767 0.81027976 0.850264125 0.816810095 0.837583873 0.836813134 0.813174748 0.867512213 0.909085809 307631250 fthfs Ferrimonas balearica DSM 9799 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Ferrimonadaceae;genus:Ferrimonas;species:Ferrimonas balearica; 0.85878069 0.990389853 0.890183447 1.053451418 1.004539659 0.878868876 0.968428047 0.944141548 1.155150301 0.93312314 1.057018139 1.030471091 0.983294641 0.810446159 0.845539026 0.8597851 0.908801722 0.880614527 270511931 vgb Streptosporangium roseum DSM 43021 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 1.328340175 1.298838797 1.230546006 1.296850892 1.236093951 1.28210014 1.232799817 1.277036791 1.258664309 1.252605545 1.221672555 1.282180768 1.211559506 1.210479491 1.196199511 1.275476532 1.297827804 1.2603524 145316699 xyla Enterobacter sp. 638 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 0.989897597 0.955762545 0.952267112 0.987695605 0.989897377 0.891456065 0.840355357 0.990978485 1.002708122 0.869882917 0.824906317 0.862357464 0.950850315 0.894434504 0.863930179 0.942822334 0.974474209 0.932715914 93354301 FBPase Cupriavidus metallidurans CH34 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 0.905093054 0.917476047 0.911123599 0.893296749 0.883011681 0.93895636 0.846163435 0.928938801 0.920518784 0.925659062 0.898559826 0.869970513 0.873036491 0.863315725 0.876520293 0.895219289 0.945639631 119899116 PRI Azoarcus sp. BH72 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 1.045764374 1.048388592 1.059698666 1.056226688 1.105809945 1.089814392 1.052887225 1.094763924 1.047440028 1.082325318 1.058385252 1.066174624 1.027807798 1.026597304 1.035939399 1.039590462 1.069644702 1.058981578 396092267 b_lactamase Enterobacter radicincitans DSM 16656 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Kosakonia;species:Kosakonia radicincitans; 0.787401605 0.837722581 0.832746419 0.821016757 0.841986584 0.8307461 0.814303838 0.812193669 0.778086833 0.814052952 0.799259357 0.83314966 0.843076715 116694915 pcpe Ralstonia eutropha H16 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 1.041631981 1.05559322 1.064469619 1.03631049 1.053722343 1.076144583 1.036460816 1.003832967 1.014809601 1.028280623 1.033910092 1.015296853 1.038162199 1.01641599 1.006159479 1.033825901 1.086905976 1.06042302 206581057 vdh Klebsiella pneumoniae 342 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 0.806854851 0.860310375 313117088 chitinase Halogeometricum borinquense DSM 11551 Carbon Cycling Carbon degradation Chitin superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halogeometricum;species:Halogeometricum borinquense; 0.960816345 0.924548161 1.009801029 0.97148819 0.981284674 1.01944649 0.979523711 0.918576962 0.942012009 1.059644971 1.048043178 0.966016935 0.985323678 1.143303523 1.07091367 0.918262726 0.942243012 0.98700374 62120275 alkb Rhodococcus sp. SH22 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 1.128326262 1.116154402 1.098420383 1.131299314 1.082824447 1.107947411 1.094015498 1.099527088 1.106124402 1.070265777 1.080499869 1.111803751 1.074288393 1.046423074 1.073865001 1.077257192 1.128757563 1.07583619 294659523 phospholipase_B_fungi Debaryomyces hansenii CBS767 virulence degradation NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Debaryomycetaceae;genus:Debaryomyces;species:Debaryomyces hansenii; 0.945870459 0.954508319 0.920013629 0.956664362 0.924440911 0.913644821 0.89934824 0.88459385 0.90824838 0.902645111 0.913432055 0.941868057 0.890907472 0.930923064 0.867016992 0.896408419 0.975906732 0.975296023 87281062 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.77641215 0.856100554 0.841555457 0.819645618 0.838008595 0.83982374 0.837742663 0.845478572 0.810946513 0.822349354 0.849612363 0.814833618 89512818 nifh uncultured nitrogen-fixing bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.864938475 0.858169191 0.82277636 0.88574896 0.811362217 0.85294421 0.871486889 0.873556994 0.893389014 0.86354178 0.847168001 0.919272981 0.839485609 0.829850051 0.813882946 0.804127945 0.899827872 0.880429724 302524326 chitinase Streptomyces sp. AA4 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 0.862807692 0.846626759 0.852462977 0.907885433 1.033518972 0.913480249 0.834653835 0.878878341 0.827526671 0.826128618 0.878251391 0.906071258 0.892184964 332180962 nifh Treponema brennaborense DSM 12168 Nitrogen Nitrogen fixation NA superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema brennaborense; 0.791040601 0.847698559 213406822 chitin_deacetylase_fungi Schizosaccharomyces japonicus yFS275 Carbon Cycling Carbon degradation Chitin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Schizosaccharomycetes;order:Schizosaccharomycetales;family:Schizosaccharomycetaceae;genus:Schizosaccharomyces;species:Schizosaccharomyces japonicus; 0.883316643 0.84431025 0.868049785 0.87511162 0.849277633 0.881555316 0.826183538 0.806979293 0.888153487 0.907112318 0.865403651 0.822847605 0.838072179 0.864013639 0.834639113 0.856801715 0.887125381 196251310 mannanase Clostridium thermocellum DSM 4150 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium thermocellum; 0.906017738 0.928911144 0.867539853 0.915460473 0.859036053 0.947222026 0.815519772 0.876058807 0.891769199 0.930775835 0.879468438 0.852273411 0.852877167 0.898242456 0.909221532 0.83784544 0.910372783 0.992094911 29125948 nosz uncultured soil bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.196357106 1.132199878 1.076411187 1.139725822 1.113507294 1.102391992 1.069487136 1.075503372 1.060944153 1.08449857 1.071665707 1.095158628 1.083077464 1.057386891 1.035179465 1.09673412 1.120729457 1.123187512 73538063 amyA Ralstonia eutropha JMP134 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 0.912144293 0.831487952 0.85969367 0.881283537 0.861241865 0.882360721 0.893277252 0.90886006 0.857561199 0.864594596 0.85049447 0.889649057 0.873623348 0.811186317 0.85204832 0.813335448 0.872731856 0.849789234 145317951 dmsa Enterobacter sp. 638 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 0.926227806 0.914088151 0.880603263 1.026704449 0.91169808 0.936853461 0.945366084 0.932428614 1.033631551 0.910548887 0.897662535 0.946665234 0.885656992 0.857811934 0.81714347 0.878978642 0.938929194 0.931097118 323468428 terc Arthrobacter phenanthrenivorans Sphe3 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter phenanthrenivorans; 1.304110599 1.277093254 1.267699562 1.293765672 1.235680029 1.272297998 1.249074606 1.265890533 1.262253174 1.267843345 1.251287167 1.27026368 1.221538872 1.223948327 1.229659397 1.243425508 1.26148836 1.251973802 339513367 napa Salmonella bongori NCTC 12419 Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella bongori; 0.82484994 0.799390653 326950107 pcag Pseudonocardia dioxanivorans CB1190 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Pseudonocardia;species:Pseudonocardia dioxanivorans; 0.905513024 0.884369048 0.896922539 0.929651237 0.882359109 0.931046164 0.918358384 0.934997974 0.913438996 0.912373318 0.899482236 0.919644841 0.873705757 0.846931351 0.868326489 0.846802459 0.923051944 0.946613758 77378703 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.945709991 0.969880104 0.953558941 0.93869539 0.97483729 0.928598182 0.953688535 0.956289112 0.973822758 0.957189317 0.924134204 0.92477822 0.881912208 0.849118235 0.819679016 0.833587538 0.887781977 0.961428813 345094558 cysJ Enterobacter asburiae LF7a Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter asburiae; 1.389360063 1.348353138 1.361815641 1.378675767 1.339338892 1.333884922 1.313556702 1.31930689 1.376108334 1.352603193 1.34879734 1.353990337 1.330165373 1.291696664 1.316956068 1.314026671 1.35474215 1.364989288 332377178 fthfs uncultured bacterium Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria; 1.047356188 1.063925897 1.059815636 1.118158413 1.099726936 1.087731408 1.080862618 1.106134503 1.058810675 1.088708845 1.102668611 1.128946596 1.075768688 1.124417646 1.151637081 1.101883361 1.08431397 1.045029429 255038613 cellobiase Dyadobacter fermentans DSM 18053 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Dyadobacter;species:Dyadobacter fermentans; 0.898509286 0.889657578 0.875416363 0.867945742 0.853968606 0.863009518 0.87762856 0.884700342 0.864858445 0.860664364 0.943026168 0.875824936 0.845066772 0.915593831 0.934226173 302665610 Sir Trichophyton verrucosum HKI 0517 Sulfur sulfite reduction NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Arthrodermataceae;genus:Trichophyton;species:Trichophyton verrucosum; 0.89633792 0.964940983 1.004449549 0.965991217 1.011452162 0.970493048 0.974682232 0.988430007 0.970409689 1.065628681 1.011074885 0.973598711 0.981383153 0.940527914 0.973134819 0.972989623 1.003325829 1.032891767 134098251 amyA Saccharopolyspora erythraea NRRL 2338 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 0.996189183 1.015573191 0.958268299 0.98034557 0.979877735 0.966956968 0.942847242 0.954149413 0.948571855 0.963932002 0.924136983 0.985872147 0.969092306 0.88370647 0.916199358 0.926368132 0.988778255 0.955180396 33320489 dsrB Desulfospira joergensenii Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfospira; 1.046104698 1.008816718 0.984501703 1.023093656 0.959226509 1.010139701 0.971920377 0.987828318 1.006199305 0.994976775 0.972600736 0.990620215 0.979149809 1.003006693 0.935646899 0.980251411 1.01374838 1.021505016 308750297 fosa Enterobacter cloacae SCF1 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter lignolyticus; 0.95246934 0.911645152 0.824957903 0.89908449 0.847477222 0.851353467 0.873872652 0.912989577 0.974590621 0.909901499 0.853286699 0.909798132 0.876043059 0.888458093 0.876202822 0.927576783 0.929118614 134294063 mhpa Burkholderia vietnamiensis G4 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia vietnamiensis; 1.004730638 0.964642963 0.980186215 1.002377363 1.019966219 1.025465357 0.987351433 0.950478737 0.969331962 0.975475805 0.985096963 0.992884373 0.981193419 0.957655235 0.939551866 0.964207119 1.020588579 0.990979819 307132352 cysI Dickeya dadantii 3937 Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya dadantii; 1.145915914 1.147085418 1.099257161 1.125604506 1.109426328 1.147871413 1.058208552 1.076091559 1.054171404 1.104527744 1.074247976 1.096681183 1.07767466 1.039152956 1.03694408 1.072593302 1.098724496 1.090714434 167596188 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.960269867 0.956335668 0.925251136 0.926457076 0.924766096 0.935768123 0.9033766 0.87543106 0.958362502 0.832315031 0.845346278 0.883092291 0.8112199 0.819678075 0.841395269 0.844858903 0.964644013 0.964819611 148257865 badh Bradyrhizobium sp. BTAi1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 1.168038897 1.151886914 1.137454732 1.164894301 1.104161034 1.119068458 1.101068298 1.130693455 1.137749698 1.127238781 1.123291187 1.126680444 1.092453333 1.066625576 1.090452871 1.102625033 1.163361282 1.139163482 340347839 xylanase Prevotella dentalis DSM 3688 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella dentalis; 0.790119617 0.892742262 0.85160241 0.83920028 0.82627556 0.826544361 0.819018022 0.806879533 0.82475669 0.844790752 0.819255091 0.886111853 145320054 terc Enterobacter sp. 638 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 0.790420401 0.857954909 0.785231225 0.86492006 0.802582738 0.816120565 0.784241648 0.821910803 55791896 catechol_b uncultured bacterium Organic Remediation Aromatics Other aromatics superkingdom:Bacteria; 0.826215983 0.798816881 0.768346894 0.815045429 0.816013709 0.841578478 227934983 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 1.15876993 0.792379694 0.804481862 0.785862787 0.779998098 0.790447346 0.823086397 0.808101301 0.812205192 0.774945733 0.825692448 367474495 catechol Bradyrhizobium sp. ORS 285 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.937821819 0.962894035 0.947882348 0.978940982 0.998411726 0.905680337 0.947504753 0.91385447 0.952333826 0.960960623 0.958301249 0.969577375 0.938280359 0.919910972 0.877609031 0.935832613 0.960063748 0.948334688 347737949 urec Azospirillum amazonense Y2 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum amazonense; 0.9718837 0.937606267 0.999537489 0.954928042 0.897607604 0.909650869 0.861144487 0.883321257 0.935403072 0.875432112 0.94248182 0.937430556 0.894501517 0.899647274 0.867344778 0.926347105 0.971338339 0.895905851 323365892 nifh uncultured microorganism Nitrogen Nitrogen fixation NA 1.38808134 1.373277302 1.397862815 1.353605336 1.437946166 1.385028976 1.394526405 1.413919002 1.344662404 1.386166863 1.421381197 1.421095895 1.388108148 1.363945618 1.412530763 1.389461192 1.345114057 1.352308031 359775665 amyA Arthrobacter globiformis NBRC 12137 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter globiformis; 0.870276794 0.886402485 0.811965996 0.902118546 0.86380358 0.902493044 0.843926557 0.841087873 0.828570815 0.862920955 0.857552381 0.845619155 0.820693947 0.822597373 0.89252752 0.881736941 422314021 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.010584623 1.045516515 0.991337128 1.036829912 0.984105695 0.983414968 0.977530865 0.942420751 1.012986982 0.974620844 0.982344074 0.996680843 0.977749836 0.971410466 0.919367694 0.956302344 1.006628053 1.020689856 330830691 amyA Aeromonas veronii B565 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas veronii; 0.999291256 1.005864419 0.97424325 0.99951693 0.966640323 1.045301688 0.992953404 0.977685274 0.974446937 1.022044121 0.972515226 1.030406665 0.916444644 0.978085274 0.940076889 0.94862682 0.994280757 1.016638785 169625712 cutinase Phaeosphaeria nodorum SN15 Carbon Cycling Carbon degradation Cutin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Phaeosphaeriaceae;genus:Parastagonospora;species:Parastagonospora nodorum; 0.954814378 0.916760578 0.936141121 0.946801361 0.920802805 0.967304673 0.935150034 0.957183524 0.954786158 0.92515576 0.887291742 0.940780143 0.869115124 0.907273645 0.857400974 0.900893612 0.942661697 0.935199637 354618386 cutinase Saccharomonospora paurometabolica YIM 90007 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora paurometabolica; 0.838941271 0.895920993 0.814750893 0.897002986 0.849771642 0.808951585 0.863873444 0.8798528 335864333 arylest Shewanella sp. HN-41 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella; 1.011399139 1.028203834 1.112685063 1.02677821 1.021759392 1.042004359 0.995870626 1.038683467 0.971503349 1.022590712 0.997463536 1.029305816 1.016465214 0.995224164 1.012581457 0.970744791 1.022464745 1.045209939 109675383 phytase Glomerella graminicola Phosphorus Phytic acid hydrolysis NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Glomerellaceae;genus:Glomerella; 1.23955386 1.23231752 1.25308243 1.267848396 1.223027811 1.246236755 1.239091414 1.249044261 1.241672428 1.22447851 1.233170355 1.25317742 1.21759896 1.211496943 1.226824711 1.248332425 1.239046413 1.222659791 302696853 pec_Cdeg Schizophyllum commune H4-8 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 1.26396823 1.221653299 1.276434114 1.255706368 1.287829701 1.313738315 1.276406253 1.266555999 1.259516948 1.289484707 1.293927845 1.248509145 1.261053122 1.290662117 1.281119891 1.259380013 1.22202977 1.286336939 94471315 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.227197024 1.271337761 1.199979417 1.237415866 1.226687286 1.200550233 1.250746956 1.215642236 1.205379604 1.173425527 1.249887206 1.27248381 1.182498959 1.13010133 1.135661323 1.311706019 1.240825443 1.223797674 158312372 tfda Frankia sp. EAN1pec Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 0.980997127 0.978910982 0.956057976 0.989043144 0.932736482 0.924672304 0.8420259 0.918933954 0.947698256 0.971701127 0.877393282 0.925986706 0.887620997 0.903021356 0.923600835 0.907975999 0.976638961 0.989555542 2822404 arsc Halobacterium sp. NRC-1 Metal Homeostasis Arsenic Detoxification superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halobacterium;species:Halobacterium salinarum; 0.912894435 0.966440691 0.92111973 0.913851305 0.919636791 0.971315959 0.891080506 0.852849566 0.914374499 0.950617665 0.858650329 0.906985965 0.90134969 0.915137532 0.908388179 0.889420024 0.930075298 0.941691593 403508169 sdsa Nocardiopsis alba ATCC BAA-2165 Organic Remediation Others NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Nocardiopsis;species:Nocardiopsis alba; 1.144014493 1.182391792 1.176470915 1.149849012 1.191468571 1.212498652 1.153584799 1.200075264 1.165244527 1.162897966 1.166240041 1.149387928 1.188463053 1.152302598 1.128738747 1.201518326 1.172218179 1.177269683 402511426 bphd alpha proteobacterium IMCC14465 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 0.811067795 0.807880942 0.835695325 0.89324698 0.862126953 0.905851523 0.994735357 0.914360695 0.854294345 0.842219676 0.897063396 0.901536339 0.855063182 0.789096946 0.816311012 0.843176243 0.87189963 0.850809493 116206044 badh Chaetomium globosum CBS 148.51 Organic Remediation Aromatics Other aromatics superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 0.928935469 0.966651327 0.940013089 0.940791499 0.920190273 0.954840865 0.87205672 0.891156667 0.919601147 0.976502641 0.897228772 0.916140787 0.991232218 0.950236697 0.893433424 0.943829052 0.928366003 0.948530567 254502915 B_lactamase_A Labrenzia alexandrii DFL-11 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia alexandrii; 0.898073022 0.995008117 0.898987743 1.000824015 0.96885447 0.893064201 1.004996335 0.919115442 0.950420975 0.914184312 0.895518973 1.002119999 0.879397679 0.938333325 0.831027123 0.876862771 0.874995064 0.922307672 302436842 amyA Streptomyces sp. AA4 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 1.366879366 1.345333533 1.321271992 1.358357722 1.29910482 1.373298506 1.293440391 1.331722219 1.319318288 1.325966097 1.315499381 1.321735097 1.286845898 1.314834441 1.275713503 1.321169974 1.355486231 1.347608454 126627156 Sir Marinobacter sp. ELB17 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter; 1.01748172 1.030014162 0.944777094 1.010359415 1.023266942 1.071868693 0.986721873 0.992934467 0.998102541 1.000906872 1.000155084 1.017858898 0.990809064 0.970926787 0.992455735 1.047335066 1.028172146 1.025493356 121712381 amyA Aspergillus clavatus NRRL 1 Carbon Cycling Carbon degradation Starch superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 1.149081364 1.179617099 1.159136382 1.127409374 1.091535119 1.171518859 1.144104072 1.122058811 1.132578967 1.147954535 1.099672794 1.115364163 1.075285 1.139205667 1.051769607 1.090002005 1.147900843 1.180340141 422314143 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.987512321 0.988980344 0.997634922 0.985689269 1.027859108 1.088483776 1.017260084 0.956228999 0.979955239 1.043854207 1.02703743 1.009442934 0.99698763 1.022237511 0.970867297 0.976585218 0.975046681 1.020418961 83025982 alkb uncultured bacterium Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria; 0.937287478 0.966960395 0.898373025 0.964629737 0.865067088 0.937536846 0.951251173 0.944739087 0.943761784 0.967350394 0.865862947 0.93365442 0.842228653 0.9285982 0.849869709 0.937252287 0.940364576 0.978684243 397166954 oxdb Enterobacter radicincitans DSM 16656 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Kosakonia;species:Kosakonia radicincitans; 0.855048748 0.814554162 0.795437086 0.807733649 0.81648761 0.83129563 322396315 PRK Methylocystis sp. ATCC 49242 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylocystaceae;genus:Methylocystis; 1.037956645 1.028803088 1.011612155 1.05196315 1.029165453 1.053855683 1.001432363 1.056402101 1.0536897 1.034343188 1.013114959 1.048631066 1.017301551 0.995330222 0.992153071 1.017451025 1.071867306 1.041183129 158523658 dsra uncultured bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.841145968 0.796939165 0.807949751 0.797966848 0.82091358 0.821720909 0.794513254 0.794034399 395233221 phn Enterobacter sp. Ag1 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 1.026761031 0.93307697 0.946442502 0.948438024 0.940319337 0.958010063 0.878794675 0.896112696 0.982718996 1.014477807 0.94921262 0.941049256 0.900015943 0.892201464 0.826810845 0.891861485 0.982538219 0.946801905 90420383 exaa(moxf) Aurantimonas manganoxydans SI85-9A1 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Aurantimonas;species:Aurantimonas manganoxydans; 1.133968898 1.129900327 1.112689295 1.100527969 1.0525785 1.128369695 1.078614451 1.110818164 1.096795129 1.130642986 1.069190545 1.100997581 1.046594497 1.087056651 1.040205674 1.084100464 1.117974738 1.157702629 13274586 amyA Pseudomonas sp. KFCC10818 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.781735087 0.807712518 0.822207682 0.81896696 0.836588508 0.886507425 0.817374538 0.789963782 0.802229197 0.816499145 0.855332262 197621296 rubisco uncultured bacterium Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria; 1.236908901 1.239122284 1.210090858 1.244694379 1.22038492 1.255238532 1.198020306 1.202924267 1.207627366 1.190567474 1.204156186 1.243342135 1.197585564 1.164175567 1.193180601 1.18708141 1.234277362 1.195594363 332377258 fthfs uncultured bacterium Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria; 0.840373056 0.888282217 0.887948436 0.823252425 0.795625972 0.809213185 0.809026114 0.833698467 0.824562244 0.835536994 0.8112319 0.840094125 222454802 arsc Halorubrum lacusprofundi ATCC 49239 Metal Homeostasis Arsenic Detoxification superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halorubrum;species:Halorubrum lacusprofundi; 0.830175701 0.851066749 0.828739466 0.790243088 0.824319993 0.835396508 0.835225625 0.840294564 0.864284276 0.790935908 383704394 norb Rheinheimera nanhaiensis E407-8 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Rheinheimera;species:Rheinheimera nanhaiensis; 0.946020036 0.95053593 0.878596646 0.961806572 0.833973808 0.953501343 0.886801946 0.942655549 0.970909006 0.930775862 0.917332807 0.910811211 0.886565179 0.89820016 0.837981775 0.893810584 0.970200674 0.974747046 325177881 amyA Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus gallolyticus; 0.831101392 0.852610252 0.854222429 0.854614192 0.794892678 0.810524076 0.816594868 0.812154094 0.832446262 0.830765676 358382817 ara Trichoderma virens Gv29-8 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Hypocreaceae;genus:Trichoderma;species:Trichoderma virens; 1.121388706 1.06450286 1.085133354 1.177859052 1.154095441 1.131004257 1.140788105 1.157744979 1.106151179 1.098465216 1.098246421 1.128763528 1.092745552 1.105848609 1.10246972 1.11902876 1.1269819 1.083676404 238707832 ppx Yersinia ruckeri ATCC 29473 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia ruckeri; 0.821531578 0.835051495 0.882942802 0.853539756 0.803437444 0.829339999 0.863040806 0.92284512 0.837130904 0.850785938 0.854369095 0.862774786 780711 nifh unidentified marine eubacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.9028298 0.951368096 0.940012945 0.961766167 0.914734838 0.992993189 0.860274516 0.935921199 0.944878454 0.94298469 0.935474005 0.941114763 0.878927937 0.839213529 0.838840813 0.930723056 0.98713762 0.908493032 330958537 vdh Pseudomonas syringae pv. maculicola str. ES4326 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 1.287425568 1.227229249 1.25720803 1.286514453 1.265641082 1.287996449 1.258847345 1.27744061 1.275715566 1.224824852 1.250429184 1.271296561 1.233949066 1.199759065 1.241745237 1.243775874 1.281398013 1.235941516 340552724 alkh Collimonas fungivorans Ter331 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Collimonas;species:Collimonas fungivorans; 0.799002288 0.893774682 0.825609533 0.842934415 0.855574316 0.87381759 0.857306205 0.822977847 0.871173408 0.863637048 145583579 protease_serine_fungi Hypocrea lixii Carbon Cycling Carbon degradation protein superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Hypocreaceae;genus:Hypocrea; 0.934776807 0.949633601 0.915507821 0.910513242 0.954667754 0.954024468 0.902297134 0.893208117 0.901545253 0.924345897 0.920457668 0.902589673 0.854670772 0.821461838 0.857756454 0.923299934 0.925300429 33320447 dsra Desulfacinum infernum Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophobacteraceae;genus:Desulfacinum; 0.897285521 0.883387259 0.843322019 0.900557398 0.884796559 0.926891821 0.853917991 0.853417288 0.909015477 0.832778976 0.846761532 0.864190396 0.828687652 0.893176352 0.847755665 0.913264282 0.881227457 115424442 chna Bordetella avium 197N Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella avium; 1.07428497 1.15965682 1.128506529 1.102592963 1.168109655 1.135099504 1.10064092 1.075676242 1.100053676 1.106632214 1.220751585 1.131931916 1.151068512 1.05270333 1.05243343 1.106243291 1.131823149 1.080419002 29652464 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.454789262 1.405196511 1.411177623 1.424369275 1.429113762 1.459473564 1.411793396 1.410872025 1.406999355 1.389358646 1.428908437 1.417263849 1.417911989 1.371470629 1.404148802 1.422866744 1.455757912 1.389786851 49237773 ppx Bartonella henselae str. Houston-1 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bartonellaceae;genus:Bartonella;species:Bartonella henselae; 0.790502259 0.866635777 0.838838033 0.87465643 0.968944902 0.850515554 0.881311293 0.878380077 0.907326274 0.862025987 0.879590422 0.915679444 0.878451773 0.937849669 0.881155241 0.836395557 0.894285088 254431342 ccmL Cyanobium sp. PCC 7001 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanobium; 1.26870076 1.241602122 1.227161288 1.270848645 1.210084258 1.254009512 1.192135394 1.227417189 1.247088455 1.226464126 1.214947974 1.219018093 1.237991862 1.179760773 1.187023199 1.177512342 1.29229054 1.222460889 334106101 RgaE Isoptericola variabilis 225 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Promicromonosporaceae;genus:Isoptericola;species:Isoptericola variabilis; 0.912668922 0.8868455 0.843121508 0.855393373 0.864344976 0.819883293 0.861098448 0.86519716 0.87956835 0.802273302 0.874021832 0.866477439 0.898300872 14389261 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.280897534 1.240116977 1.213602278 1.244198897 1.198432188 1.260509529 1.184406752 1.19923576 1.217612175 1.207321471 1.19374965 1.219453912 1.178180452 1.199915649 1.17856758 1.196049999 1.257179411 1.21375824 24982339 nitro Pseudomonas putida KT2440 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 1.025982063 1.053388288 0.987844486 1.039170241 0.958548725 0.992477916 0.98428217 1.013558806 1.004475067 0.997554521 0.948841415 1.054309774 0.969336868 0.949475165 0.947662245 0.955074125 1.024016248 1.035464964 291578776 FBPase Nitrosococcus halophilus Nc4 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Nitrosococcus;species:Nitrosococcus halophilus; 0.83132076 0.788887477 0.809730946 0.8125215 0.81612629 0.825891033 0.794056217 0.7813744 0.812401532 0.824791738 0.8270828 88175145 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.935852445 0.897636975 0.909378633 0.932231428 0.938485285 0.906452054 0.954338498 0.963346612 0.963698179 0.939041724 0.909239747 0.906395725 0.911092777 0.858154916 0.921152156 0.891167578 0.953267734 0.969608419 328490491 tehb Photobacterium leiognathi subsp. mandapamensis svers.1.1. Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium leiognathi; 0.904031925 0.894565747 0.980350027 0.933253308 0.956958436 0.9182248 0.916868923 0.938637132 0.935118707 0.92852813 0.93778241 0.964827792 0.900556475 0.919688075 0.973183971 0.911692089 0.901022783 0.865867992 336117002 amyA Microlunatus phosphovorus NM-1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Microlunatus;species:Microlunatus phosphovorus; 1.182547534 1.120532223 1.17324871 1.122246546 1.079128778 1.090000789 1.035155531 1.089117093 1.158237477 1.103999328 1.108968055 1.080870987 1.097157869 1.094023771 1.090183398 1.061851594 1.15477951 1.132084596 324108994 mannanase Ruminococcus albus 8 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus;species:Ruminococcus albus; 1.043338749 1.109009868 1.068857135 1.079795679 1.11970268 1.148146446 1.10181342 1.084472679 1.086631928 1.116664532 1.115800989 1.116026599 1.129087632 1.119719514 1.083814407 1.087283708 1.099501709 1.06695816 390455099 terc Paenibacillus peoriae KCTC 3763 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus peoriae; 0.853980756 0.870261846 0.906417189 0.812018833 0.849844548 0.821026699 0.806203751 0.828616765 0.859326285 0.83964902 0.870731872 77378505 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.87786818 0.93920143 0.870516343 0.91282446 0.926293457 0.917176605 0.869064069 0.978893879 0.888521368 0.884158858 0.861402336 0.852119199 0.884508337 0.829259085 0.941637578 0.973157179 303323575 phospholipase_A2_fungi Coccidioides posadasii C735 delta SOWgp Carbon Cycling Carbon degradation Phospholipids superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;genus:Coccidioides;species:Coccidioides posadasii; 0.982178603 0.912779927 0.952303113 1.066682586 0.936785072 0.900518137 0.969243344 0.965792952 0.999313397 0.947129178 0.905692596 0.947697094 0.945416715 0.882361176 0.863888133 0.846748642 0.975699971 0.931991108 61743047 cutinase Phytophthora infestans Carbon Cycling Carbon degradation Cutin superkingdom:Eukaryota;order:Peronosporales;genus:Phytophthora; 1.214136336 1.213540679 1.152458771 1.217098468 1.174186751 1.217004475 1.175074607 1.198771934 1.195106662 1.186379515 1.177157994 1.255905739 1.130719583 1.150083789 1.159830969 1.174379705 1.180396189 1.186587649 367019058 ara Myceliophthora thermophila ATCC 42464 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Myceliophthora;species:Myceliophthora thermophila; 0.922563912 0.937312134 0.920176768 0.961063838 0.977362404 0.951391866 0.945124058 0.905332698 0.958038122 1.008313606 0.889121446 0.959521029 0.944503503 0.970546131 0.921113904 0.942223389 0.932907205 0.933685403 296128949 amyA Cellulomonas flavigena DSM 20109 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas;species:Cellulomonas flavigena; 1.059384823 1.131532202 1.074123424 1.128548931 1.041735339 1.120333193 1.014365171 1.076167416 1.081192683 1.114005386 1.022280587 1.129760826 1.067029668 1.088165307 1.039790154 1.105316568 1.099476468 1.10855808 187923974 cysJ Burkholderia phytofirmans PsJN Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 1.080135059 1.042211859 1.023192433 1.062025652 1.063342999 1.078716874 1.068264778 1.017527899 1.057362808 1.090407519 1.051676336 1.040982207 1.024801602 1.014320737 0.964159035 1.023081576 1.082298064 1.068268451 191164679 mer Geobacter sp. M21 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 1.023755365 1.061985998 0.987999489 1.018386635 1.012277639 1.047632402 0.98084888 1.04108252 0.999527875 1.027315697 1.038362735 1.02114763 1.013226124 1.009834763 0.962883425 0.99774288 1.050247968 1.059918399 66048001 chitinase Pseudomonas syringae pv. syringae B728a Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae; 0.842059254 0.854886797 0.852513329 0.836552115 0.852530787 0.804040998 0.793736947 0.832282131 0.821802547 0.809002612 0.850006222 0.797848908 0.813307744 0.859123968 3157570 nifh unidentified nitrogen-fixing bacteria Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.846379638 0.858657869 0.888960083 0.867652706 0.904554887 0.846345337 0.880602249 0.851871261 0.870097899 0.849765232 0.899222799 0.835640613 0.867649426 0.81925495 0.81284623 0.888642152 0.837469443 337764133 chitinase Streptomyces cattleya NRRL 8057 = DSM 46488 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces cattleya; 1.09180796 1.070782297 1.027200383 1.097916932 1.008356619 1.094528388 1.03676979 1.067288794 1.076858054 1.06137167 1.028449006 1.065126938 0.994680753 1.044576422 0.989120083 1.039239537 1.101311543 1.098965744 291286371 amyA Denitrovibrio acetiphilus DSM 12809 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Deferribacteres;class:Deferribacteres;order:Deferribacterales;family:Deferribacteraceae;genus:Denitrovibrio;species:Denitrovibrio acetiphilus; 0.888522389 0.886852451 0.906295703 0.967630824 0.93522897 0.895896762 0.980661532 0.895021081 0.971377062 0.833328994 0.839555082 0.891011956 0.875943317 0.843027074 0.848597132 0.919481816 0.92601432 0.928956262 259348901 rd Silicibacter sp. TrichCH4B Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 0.839842983 0.855440473 0.871980922 0.86796492 0.805370521 0.847521924 0.85556896 0.838388223 0.866249119 0.880153488 0.84612739 0.867791139 0.885061504 319413972 phenol_oxidase uncultured bacterium Carbon Cycling Carbon degradation Lignin superkingdom:Bacteria; 1.133801894 1.123330464 1.100021006 1.11653927 1.104611192 1.188883483 1.082366518 1.06388421 1.125400501 1.12874521 1.109918828 1.118108726 1.099304041 1.109080149 1.048581527 1.142335285 1.13340243 1.103659664 238725435 amyA Yersinia intermedia ATCC 29909 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia intermedia; 0.911547869 0.897711262 0.872289434 0.931249904 0.871720424 0.832345068 0.877636438 0.891785542 0.863789154 0.839516345 0.834239613 0.841455363 0.878804752 0.807748042 0.869640852 0.901924326 0.90822091 226309080 terc Rhodococcus erythropolis PR4 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 0.916409192 0.913382447 0.882580767 0.942037131 0.83205331 0.926653959 0.832055891 0.86554477 0.95495235 0.91708809 0.866709217 0.929277722 0.816041937 0.977137679 0.83081447 0.886108356 0.926061467 0.940012092 239831673 nirk Ochrobactrum intermedium LMG 3301 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum intermedium; 1.197525583 1.161528279 1.15422167 1.164271236 1.104327862 1.150432846 1.097585971 1.136118017 1.143489477 1.143259099 1.165511229 1.173694416 1.079893882 1.094403786 1.079949458 1.099106383 1.141933556 1.143530709 212171466 alkb Salinisphaera sp. S19-3-2 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Salinisphaerales;family:Salinisphaeraceae;genus:Salinisphaera; 0.86007968 0.879783971 0.868683784 0.891625418 0.865122551 0.858691595 0.819237201 0.80210815 0.852469625 0.845305262 0.832330469 0.849347946 0.855994247 0.834428993 0.866913267 0.87190553 0.901171398 111116450 xylc Pseudomonas putida Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.98737459 0.918254093 0.986516092 0.990982169 0.998907878 0.938553659 0.947307797 1.009965626 1.026517087 0.963299606 0.969635685 1.016308826 0.919756466 0.942911595 1.002346196 0.963229907 1.001540132 0.957261882 156234208 mcr Roseiflexus castenholzii DSM 13941 Carbon Cycling Carbon fixation 3-hydroxypropionate bicycle superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus;species:Roseiflexus castenholzii; 1.193096792 1.170224678 1.15435365 1.162996806 1.125632501 1.19537459 1.160842289 1.150272288 1.122114541 1.167597036 1.165577146 1.153505468 1.108728468 1.154828902 1.089534009 1.150445531 1.187116771 1.158451615 365815767 ppx Patulibacter sp. I11 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Solirubrobacterales;family:Patulibacteraceae;genus:Patulibacter; 1.246143478 1.221204793 1.247190275 1.228644556 1.24376756 1.275457721 1.229568654 1.222819522 1.233281236 1.22954533 1.227910339 1.247926868 1.214724499 1.222678957 1.23706821 1.239739836 1.273423646 1.249093056 302383523 poba Brevundimonas subvibrioides ATCC 15264 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Brevundimonas;species:Brevundimonas subvibrioides; 1.05318158 1.055608899 1.014737586 1.057768159 1.000254607 1.00800455 1.001022884 1.045580791 1.034034207 1.03462332 1.041078546 1.032021832 0.981024314 1.013311696 0.981564306 1.018413554 1.044568866 1.035864256 46115084 exopolygalacturonase_fungi Gibberella zeae PH-1 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Gibberella;species:Gibberella zeae; 0.840532716 0.863093308 0.877573222 0.821465953 0.840223424 0.857458562 0.847492133 0.810523873 0.800430652 377523082 amyA Gordonia otitidis NBRC 100426 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia otitidis; 1.076152205 0.93516412 0.856084302 0.938252812 0.856140786 0.903935584 0.8587183 0.832735213 0.952536812 0.889180948 0.849946641 0.881011553 0.884216907 0.887610689 0.868083562 0.87898228 0.89278914 328913406 Sir Bacillus amyloliquefaciens LL3 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus amyloliquefaciens; 0.81712258 0.882200789 0.834845285 0.9017571 0.907935769 0.83888515 0.827728687 0.836350239 0.947628509 0.911483652 0.836117549 0.875087606 0.893809526 0.841993378 0.956352521 0.899998031 0.834070625 149810519 fthfs Roseobacter sp. AzwK-3b Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 0.99561585 1.001863221 0.951812766 0.984347513 0.946994904 0.983541569 0.974018968 0.928335968 0.970165459 0.973173224 0.993965285 0.975447379 0.980298062 0.994963657 0.957518598 0.982977242 0.992748182 0.980149197 206678291 GAPDH_Calvin Rhodobacteraceae bacterium HTCC2083 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 1.240383715 1.173284084 1.188358401 1.225428448 1.180867091 1.171055929 1.175764861 1.191034066 1.173633901 1.163825244 1.180623899 1.197040908 1.160049811 1.158210116 1.203299537 1.209869319 1.178991188 1.172085889 224472732 phenol_oxidase Laccaria bicolor Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Tricholomataceae;genus:Laccaria; 1.011116839 0.935440466 0.915706551 0.985771697 0.915224371 0.946712358 0.909068895 0.943037946 0.932044068 0.93722885 0.913436231 0.944451394 0.928814835 0.955521646 0.916249957 0.945087335 0.927634835 0.910529445 371940164 chitinase Bacillus licheniformis Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 0.825354466 0.870222691 0.842965842 0.839122273 0.830229784 0.837217625 0.817071884 0.80154436 0.848098312 0.83633636 0.796918107 0.735198395 365895611 pcpe Bradyrhizobium sp. STM 3843 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 1.279332918 1.272229141 1.236481657 1.263100475 1.231672507 1.267438074 1.231729624 1.252903809 1.249928902 1.253866415 1.241134696 1.253407027 1.207361748 1.194561821 1.184258539 1.245893596 1.254805172 1.263016097 170108658 phenol_oxidase Laccaria bicolor S238N-H82 Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Tricholomataceae;genus:Laccaria;species:Laccaria bicolor; 0.769788301 0.810650383 0.84013596 0.881770631 0.825484974 0.868954415 0.823192321 299539200 TIM Nitrosococcus watsonii C-113 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Nitrosococcus;species:Nitrosococcus watsonii; 0.846300557 0.912722416 0.832319447 0.885274165 0.81505998 0.833150712 0.821023296 0.834769319 0.864456496 0.855168846 0.797963094 0.832193825 0.770816408 0.816421876 0.86153394 0.816596499 0.843014242 0.88284583 380696310 chitinase Bacteroides faecis MAJ27 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides faecis; 0.966723209 0.980951123 0.932834441 0.913668107 0.937136834 0.925342206 0.863245262 0.878959949 0.917569903 0.921006084 0.921797657 0.933591471 0.915833995 0.914395672 0.870415348 0.878485379 0.940213941 0.930692813 219722844 linc Stenotrophomonas sp. SKA14 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas; 1.141292952 1.095164805 1.065787568 1.087545904 1.075597798 1.175406181 1.06043951 1.076512543 1.053195497 1.088617133 1.087342185 1.112831024 1.040229896 1.066540109 1.073567673 1.074697351 1.108094495 1.06423496 329889278 linc Brevundimonas diminuta ATCC 11568 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Brevundimonas;species:Brevundimonas diminuta; 0.916306527 0.944760133 0.911313074 0.914153962 0.869713414 0.936673656 0.880076017 0.892162719 0.895270568 0.890535401 0.866270787 0.88513369 0.892344684 0.873143357 0.879927813 0.89779218 0.907248203 0.932930677 355671186 bphF1 Clostridium citroniae WAL-17108 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium citroniae; 0.823270496 0.84040559 0.825280161 0.900111653 0.891502688 0.933223262 0.88612322 0.88276594 0.859965579 0.904755567 0.826998759 0.837391095 0.884297659 0.898071537 0.817353091 0.884213197 0.898196519 0.912224217 291566055 amyA Arthrospira platensis NIES-39 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Arthrospira;species:Arthrospira platensis; 1.041743162 1.022707973 0.993728847 1.063192297 1.048393907 1.04240243 1.030947879 1.087557604 1.045323557 1.009371438 1.031144273 1.014459216 1.017075847 0.993781461 0.979790642 1.058685551 1.050190113 1.014487826 288570203 CsoS1_CcmK Dethiosulfovibrio peptidovorans DSM 11002 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Synergistetes;class:Synergistia;order:Synergistales;family:Synergistaceae;genus:Dethiosulfovibrio;species:Dethiosulfovibrio peptidovorans; 0.869104873 0.918190962 0.848495692 0.79413495 350552305 b_lactamase Thiorhodospira sibirica ATCC 700588 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thiorhodospira;species:Thiorhodospira sibirica; 0.83378095 0.818452584 0.831044296 302412090 cutinase Verticillium albo-atrum VaMs.102 Carbon Cycling Carbon degradation Cutin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticilium;species:Verticillium albo-atrum; 1.078710701 1.003656751 1.064184098 1.10502962 1.066533902 1.114566903 1.093723865 1.093344082 1.102535422 1.04679067 1.041464102 1.047620269 1.050528936 1.061108334 1.004000053 1.092742973 1.101693283 1.077829766 204304175 nifh uncultured microorganism Nitrogen Nitrogen fixation NA 1.26113119 1.244448159 1.236068859 1.293512814 1.247020994 1.249178987 1.246020248 1.252493956 1.255370699 1.230334767 1.238291691 1.278572408 1.221998468 1.20840208 1.25050809 1.257806397 1.266284935 1.21587511 312140696 pcag Rhodococcus equi 103S Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus equi; 0.962685424 0.953917554 0.89660377 0.960796636 0.903384735 0.941094056 0.927139146 0.926341622 0.938930622 0.912267903 0.862187292 0.929661975 0.890202798 0.911412482 0.84513811 0.901387824 0.969160203 0.982651036 164641276 Sir Laccaria bicolor S238N-H82 Sulfur sulfite reduction NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Tricholomataceae;genus:Laccaria;species:Laccaria bicolor; 0.786421283 0.82418855 0.815658596 0.805471463 0.799550092 0.80427257 121495612 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.782925575 0.818080976 344039367 nhh Streptomyces violaceusniger Tu 4113 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces violaceusniger; 1.039468044 1.021706074 1.029900912 1.078755203 1.035619022 1.013961521 1.052978912 1.045555889 1.063454289 1.031188938 1.040616691 1.074350578 1.026329161 0.988067409 0.988058378 1.028508455 1.06342092 1.016648131 148474794 napa uncultured bacterium Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria; 0.801944862 0.793439792 0.885345443 0.793757112 0.799660064 0.851196746 0.82402208 0.876314156 164598114 exoglucanase Clitocybe nuda Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Tricholomataceae;genus:Clitocybe; 0.837015325 0.829014411 0.885677428 0.911745548 0.803179827 0.840364045 0.819332191 0.878118417 0.846531044 0.833023204 0.828288157 0.864902603 0.806550256 0.88521211 0.877253494 353189713 amyA Mycobacterium rhodesiae JS60 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 1.354174997 1.339816987 1.353937124 1.332217748 1.33902427 1.35950675 1.273315729 1.281762273 1.308625852 1.324316779 1.351733924 1.351426361 1.323882433 1.296999926 1.301899528 1.288449952 1.323888936 1.32462511 170655245 tktA Methylobacterium radiotolerans JCM 2831 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium radiotolerans; 1.000117104 0.965415259 0.94706421 0.964027959 0.908827605 0.975281014 0.87839002 0.942171207 0.974590681 0.950437365 0.915198931 0.949010409 0.911666019 0.93960883 0.922056056 0.914757775 0.980271446 0.944652767 3348099 endopolygalacturonase_fungi Fusarium oxysporum f. sp. lycopersici Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;genus:Fusarium;species:Fusarium oxysporum; 0.890589816 0.875688839 0.91399608 0.807881231 0.877590007 0.839385216 0.885980624 0.82914065 0.897648336 0.885731992 13422431 cysI Caulobacter crescentus CB15 Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter vibrioides; 1.224105795 1.231515746 1.243656382 1.216946061 1.203910516 1.266378704 1.177799019 1.200744263 1.244937839 1.218928391 1.18254483 1.201864373 1.170129292 1.206890327 1.168593028 1.203466883 1.207838644 1.222369597 342821382 nitrilase Vibrio nigripulchritudo ATCC 27043 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio nigripulchritudo; 0.918736924 0.908823911 0.939865899 0.958850824 0.937997129 0.958315657 0.923692005 0.95950413 0.959018979 0.966988224 0.915523474 0.901237088 0.926984272 0.952426205 0.858617936 0.963520872 0.931449597 0.927726572 158316922 amyA Frankia sp. EAN1pec Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 1.003805438 0.956341091 0.976363149 1.020126404 0.996614906 0.991724648 0.998103026 0.982459504 0.965736786 0.961467212 0.987311384 0.994114314 0.9465101 0.994214764 0.904940327 0.969086782 0.972268057 0.978337126 84499236 mer Oceanicola batsensis HTCC2597 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola batsensis; 1.158375721 1.162059698 1.138730385 1.13884999 1.162145263 1.155280781 1.173053021 1.17487266 1.181036961 1.157437743 1.137292638 1.117520912 1.130199478 1.107095308 1.099057518 1.090761814 1.151238922 1.17520607 170654948 terc Methylobacterium radiotolerans JCM 2831 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium radiotolerans; 0.883691338 0.967761023 0.960939716 0.967261321 0.954039198 0.981707709 0.934668091 0.946416856 0.950704957 0.928518234 0.976540953 0.957876736 0.938177785 0.974262892 0.948913832 0.941506001 0.94104468 1.034819481 377813186 pcag Burkholderia sp. YI23 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 0.883009232 0.821499153 0.845565589 0.815395031 0.861034654 0.802613756 320334455 cda Deinococcus maricopensis DSM 21211 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus maricopensis; 1.190252572 1.196923749 1.174614718 1.178552326 1.175967057 1.214662809 1.178153247 1.177073893 1.1613315 1.153544899 1.180225798 1.180388245 1.160783951 1.135779304 1.157652526 1.177524955 1.198741652 1.193961716 223585860 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.046011533 1.046676048 1.046900852 1.041179046 1.066119913 1.025022647 1.023195901 1.034166203 1.03144785 1.013556724 1.032457378 1.062864609 1.020732481 0.996655897 0.933716923 0.983533829 1.048237496 1.010442531 219683514 ppx Bifidobacterium animalis subsp. lactis AD011 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium animalis; 1.090923757 1.027828014 1.010059892 1.091806491 1.044212101 1.049302028 1.016929294 1.041914901 1.068602627 1.020003823 1.057546682 1.079845152 1.027485308 1.021960834 1.048883923 1.048960498 1.092808475 1.012228748 384419128 mannanase Xanthomonas oryzae pv. oryzicola BLS256 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas oryzae; 0.916303405 0.883151483 0.813624087 0.872631646 0.812613482 0.81979345 0.888857992 0.85830703 0.897512173 0.857300244 0.862679738 0.837429339 0.834108616 0.830125601 0.836255005 0.836557078 0.866605751 0.884691344 374368672 nhh Cupriavidus basilensis OR16 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus basilensis; 0.829105567 0.807989415 0.80573728 0.810953903 0.821963776 0.795113042 0.832269655 0.813298327 359464057 FBPase Acaryochloris sp. CCMEE 5410 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Acaryochloris; 0.844710846 0.78491116 0.980156295 0.863315993 0.856805399 0.871740373 0.855416204 0.813275567 0.789447186 0.834338513 212716784 fthfs Bifidobacterium catenulatum DSM 16992 = JCM 1194 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium catenulatum; 0.906869757 0.953938293 0.8981492 0.966698565 0.928704752 0.93551413 0.925037945 0.889640889 0.921325465 0.922566644 0.955943952 0.945929698 1.099494919 0.824904165 0.845339212 0.871475589 0.910016707 0.891939803 260774244 amyA Vibrio metschnikovii CIP 69.14 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio metschnikovii; 0.963852929 1.008559381 0.999694514 0.940459673 0.975931006 0.990482192 0.95996281 0.956805902 0.957613306 0.92238177 0.976412563 0.953342009 0.916866088 0.91322894 0.890978957 0.92529516 0.942692117 0.98596892 148557165 vana Sphingomonas wittichii RW1 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 0.915435523 0.952643564 0.869508551 0.934847433 0.824506596 0.935429941 0.836668623 0.917569378 0.940108585 0.907113217 0.86367036 0.875995191 0.837036803 0.878803521 0.82451891 0.853889614 0.955433652 0.975114934 186468755 terc Nostoc punctiforme PCC 73102 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc;species:Nostoc punctiforme; 0.827512827 0.85384024 55845951 nitrate_reductase Thalassiosira oceanica Nitrogen N Assimilation NA superkingdom:Eukaryota;phylum:Bacillariophyta;class:Coscinodiscophyceae;family:Thalassiosiraceae;genus:Thalassiosira; 0.89578959 0.989523708 0.828178953 0.942414739 0.968720601 0.865559394 0.919828281 0.889784895 0.904618202 0.921768175 0.871594664 0.925008157 0.961762895 0.847798065 0.895773281 0.871792181 0.877403923 0.891912 114707094 PRI Fulvimarina pelagi HTCC2506 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Fulvimarina;species:Fulvimarina pelagi; 1.099178638 1.108309713 1.123906694 1.151303786 1.107387323 1.12819267 1.117870516 1.121959453 1.105776921 1.105594617 1.109473388 1.12782034 1.108447235 1.064293474 1.053441467 1.103632115 1.131142629 1.111418183 150275006 CsoS1_CcmK Bacteroides capillosus ATCC 29799 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;genus:Pseudoflavonifractor;species:Pseudoflavonifractor capillosus; 1.017798569 0.985313025 1.017750667 1.026851947 1.001568726 0.984466247 0.946598012 1.020384478 0.97707707 0.97460953 0.987901493 1.025170139 0.966536515 0.953241173 0.975361141 0.941879656 1.024620509 0.996253635 359739662 linb Saccharomonospora azurea SZMC 14600 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora azurea; 1.28241514 1.25733658 1.234150567 1.267105714 1.231638281 1.271061222 1.228079252 1.241539225 1.223993384 1.218651969 1.22473328 1.256181182 1.229184852 1.202407181 1.227033031 1.253518811 1.284679358 1.233364447 302442226 amyA Streptomyces sp. C Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 1.221982368 1.191354927 1.219894893 1.195014194 1.16579857 1.215278526 1.178142521 1.169425581 1.192431995 1.208398047 1.177863229 1.208931739 1.172719715 1.165433562 1.159417597 1.153996491 1.221443728 1.20044549 55791888 catechol_b uncultured bacterium Organic Remediation Aromatics Other aromatics superkingdom:Bacteria; 1.094477631 1.059581877 1.090998951 1.103048605 1.096811381 1.117795872 1.075353785 1.122644003 1.082598456 1.084817981 1.087231664 1.098776818 1.075989814 1.052403197 1.022253306 1.036547377 1.102297652 1.078907159 112462895 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.798277458 0.866116347 0.826532846 0.81017807 0.798086122 0.835019738 0.799127359 0.830631616 0.833686207 0.842409577 0.881882442 47680327 rubisco uncultured bacterium Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria; 0.871281539 0.896119734 0.781613424 0.869125386 0.950598063 0.876320963 0.833661627 0.879238564 0.94648414 0.977155986 0.929197548 0.826869096 0.924820556 0.882181695 0.935782902 0.884839908 164635445 pme_Cdeg Laccaria bicolor S238N-H82 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Tricholomataceae;genus:Laccaria;species:Laccaria bicolor; 1.202228414 1.172986997 1.175583401 1.176870843 1.169660748 1.1709759 1.165815073 1.169152707 1.139669275 1.148458169 1.183872846 1.150042586 1.111819054 1.129093011 1.10130757 1.099818864 1.176888093 1.177829652 148547940 oxdb Pseudomonas putida F1 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 0.969620218 0.979822445 0.933047585 0.96275576 0.976378499 1.007430429 0.930707208 0.919345465 0.950366193 0.925821349 0.884529363 0.930065883 0.912661526 0.942638988 0.899594716 0.909231589 1.01225893 0.986696451 307596092 por_DiC4HB Vulcanisaeta distributa DSM 14429 Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Vulcanisaeta;species:Vulcanisaeta distributa; 0.816520355 0.83242534 0.858917042 0.801848697 169175749 cellobiase Arthrobacter chlorophenolicus A6 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 1.055035905 1.045402891 1.042034406 1.061097868 1.063340584 1.083824981 1.061367228 1.055977882 1.063441981 1.034927379 1.047798141 1.061630532 1.046760308 1.032919799 1.039327997 1.062401399 1.063063901 1.002320671 269095602 acetylglucosaminidase Sanguibacter keddieii DSM 10542 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Sanguibacteraceae;genus:Sanguibacter;species:Sanguibacter keddieii; 0.846135878 0.867299492 0.807305575 0.834034021 0.819997437 0.818503615 0.826038025 0.849880968 0.875239636 34604741 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.821671319 0.821627395 0.834188582 0.866679388 0.831065431 0.844076106 0.883911897 0.832295445 0.842356048 300789238 mannanase Amycolatopsis mediterranei U32 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 0.942569948 0.948961975 0.94214696 0.956376923 0.902386613 0.953698455 0.915998851 0.921804393 0.943435107 0.939053684 0.926484155 0.938569069 0.935715392 0.919311781 0.906472083 0.930655141 0.959092895 0.9547578 269786383 amyA Sphaerobacter thermophilus DSM 20745 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Chloroflexi;class:Thermomicrobia;order:Sphaerobacterales;family:Sphaerobacteraceae;genus:Sphaerobacter;species:Sphaerobacter thermophilus; 1.064656349 1.019872564 1.020208956 1.03213572 1.117416332 1.137849421 1.13771167 1.004427179 0.997279097 1.130809399 1.120630636 1.028874575 1.102977194 1.114070473 1.022941606 1.087733899 1.083791178 1.012772208 372474328 cysI Opitutaceae bacterium TAV5 Sulfur Other NA superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 1.389564894 1.323128285 1.332102031 1.36190062 1.300096854 1.342831285 1.308546209 1.324261592 1.339447749 1.320709883 1.308824071 1.34151609 1.28624808 1.296388492 1.288262268 1.316293165 1.370006268 1.321064435 113867775 pcpe Ralstonia eutropha H16 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 0.898512058 0.919642564 0.90614098 0.885431635 0.864179918 0.896860064 0.872760909 0.885742155 0.871220684 0.902888001 0.857785956 0.89567025 0.839805529 0.864871098 0.815422996 0.84600334 0.880674847 0.923428597 344343392 PRI Marichromatium purpuratum 984 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Marichromatium;species:Marichromatium purpuratum; 1.228615672 1.187318058 1.20348352 1.187855512 1.174052305 1.22290826 1.211734749 1.206546264 1.181741618 1.165362033 1.10653712 1.163245575 1.155733879 1.140315355 1.11247051 1.133282877 1.19751031 1.205155984 156232561 amyA Roseiflexus castenholzii DSM 13941 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus;species:Roseiflexus castenholzii; 1.392788285 1.355194656 1.361479198 1.368721506 1.355459665 1.407831743 1.344518723 1.353605294 1.362249082 1.322576499 1.340880146 1.329905291 1.328333214 1.306874425 1.343386526 1.328502964 1.40337962 1.345063476 258566796 phospholipase_D_fungi Uncinocarpus reesii 1704 Carbon Cycling Carbon degradation Phospholipids superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Onygenaceae;genus:Uncinocarpus;species:Uncinocarpus reesii; 1.555133 1.518252883 1.516320717 1.522319931 1.495192637 1.510446989 1.450097465 1.520326265 1.505190078 1.482359552 1.501347454 1.537313869 1.472237676 1.453660241 1.470651872 1.486808651 1.522480493 1.500570377 256823637 tehb Kangiella koreensis DSM 16069 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Kangiella;species:Kangiella koreensis; 0.805974107 0.790583264 226347020 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.000831216 0.870247391 0.852970039 0.904612224 0.891778946 0.869331147 0.872491533 0.920592294 0.87878738 0.847240252 0.890217371 0.857762722 0.86407436 389862683 ppx Modestobacter marinus Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Geodermatophilaceae;genus:Modestobacter; 1.132791358 1.155765331 1.129770974 1.127768413 1.110959298 1.143296061 1.089488843 1.113374411 1.110407062 1.101862902 1.107842631 1.10497843 1.080495357 1.093616476 1.074033695 1.078442575 1.140308995 1.146678643 259348868 phn Silicibacter sp. TrichCH4B Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 0.91218372 0.911690733 0.862164094 0.9063277 0.883740992 0.85635081 0.809483345 0.842143505 0.924822549 0.853007566 0.829564616 0.847117367 0.8189568 0.821523495 0.927070691 0.916457391 378950571 vdh Pseudomonas fluorescens F113 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 1.015419664 1.027347334 0.907474351 0.995200331 0.9297299 0.995832164 0.978422203 0.961415061 0.981907571 0.923130753 0.945601885 1.031984936 0.896235086 0.942947818 0.856932518 0.892747742 0.951337517 1.018936258 377558716 cellobiase Gordonia otitidis NBRC 100426 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia otitidis; 0.978436025 0.986543712 0.965944794 0.994182709 0.934787737 0.950542744 0.938796298 0.972683342 0.957554872 0.960303612 0.930326387 0.986577605 0.978032203 0.959651462 0.961425359 0.964118438 0.968927068 0.984598182 238720698 amyA Yersinia mollaretii ATCC 43969 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia mollaretii; 0.832834411 0.807799299 0.840344026 0.886165198 0.811945793 0.811067368 0.819915953 0.83949424 0.83835101 0.814014009 0.808088487 0.818504952 0.809253814 109452563 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.911907266 0.886144505 0.936928264 0.928259232 0.926240633 0.930293766 0.946674045 0.92265199 0.889445032 0.918209376 0.929255064 0.877246 0.897484362 0.884217074 0.890979667 0.936474873 0.922041974 284037012 xylanase Spirosoma linguale DSM 74 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Spirosoma;species:Spirosoma linguale; 0.954513218 0.889701362 0.940091775 0.967558968 0.828566404 0.906862569 0.889506776 0.937549334 0.950773658 0.904743275 0.90788171 0.918462314 0.886980598 0.856734509 0.886534249 0.851547325 0.946194205 0.9301696 296426465 phenol_oxidase uncultured bacterium Carbon Cycling Carbon degradation Lignin superkingdom:Bacteria; 0.894578309 0.908165601 0.881474904 0.872041127 0.837698571 0.85354701 0.834268095 0.902791658 0.849282655 0.8641259 0.81577443 0.833100541 0.8131657 0.896092524 0.893685807 110808292 dsrB uncultured Desulfotomaculum sp. Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum; 1.139250725 1.064986105 1.011087832 1.036387678 1.023986797 1.016688743 0.977946474 1.035606374 1.014963448 1.041174937 1.030297799 1.055719124 0.976827329 1.020859493 0.950749941 0.994906265 1.076557263 1.015640865 303277295 nitrite_reductase_protist Micromonas pusilla CCMP1545 Nitrogen Assimilation NA superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Mamiellophyceae;order:Mamiellales;genus:Micromonas;species:Micromonas pusilla; 0.923969724 0.943345825 0.857417279 0.92706745 0.871849298 0.90978593 0.883533053 1.101832955 0.917168445 0.885699378 0.900403583 0.895113724 0.818669434 0.838070072 0.845800972 0.938172731 0.950842273 117949590 phenol_oxidase uncultured bacterium Carbon Cycling Carbon degradation Lignin superkingdom:Bacteria; 0.993726086 0.775395291 0.752101381 0.825267353 89346908 urec Rhodoferax ferrireducens DSM 15236 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Albidiferax;species:Albidiferax ferrireducens; 1.229773094 1.242918192 1.239955101 1.222156699 1.276528173 1.291017947 1.232312892 1.19397205 1.250289047 1.254194096 1.26174157 1.2249265 1.268915209 1.27264013 1.271654664 1.245504925 1.261439209 1.237873602 284037993 amyA Spirosoma linguale DSM 74 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Spirosoma;species:Spirosoma linguale; 0.97092539 0.956592796 0.925161897 0.898321167 0.92402103 0.94321331 0.88405037 0.85368993 0.919966584 0.959875617 0.916614 0.945701326 0.914609252 0.937629204 0.849270615 0.872832097 0.95756784 0.927912583 390423501 mannanase Alistipes finegoldii DSM 17242 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Rikenellaceae;genus:Alistipes;species:Alistipes finegoldii; 0.840513865 0.835622981 0.82170175 0.857520636 0.809736253 0.856507978 0.865805879 0.852590111 0.809320057 0.869146215 0.882187236 302038697 ppk Candidatus Nitrospira defluvii Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Nitrospirae;class:Nitrospira;order:Nitrospirales;family:Nitrospiraceae;genus:Nitrospira; 0.804246917 0.84354985 0.857415243 0.830162181 0.855227267 0.766301873 0.823610856 0.810203744 0.845218043 0.824478448 344167831 terc blood disease bacterium R229 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 1.005720892 1.051561393 0.996276539 1.048304953 1.029287976 1.038812276 1.01507957 1.018015569 1.006851555 1.014545082 0.993482572 1.038368901 1.007333936 0.976177664 0.98413681 1.011151138 1.049128925 0.995209456 261351990 cellobiase Verticillium albo-atrum VaMs.102 Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticillium;species:Verticillium alfalfae; 0.992797417 1.010067207 0.983142235 0.957663943 0.956285186 0.982936059 0.953003553 0.952277703 0.97802351 1.021948943 0.955956141 0.974760975 0.936785414 0.979763941 0.95399486 0.958394394 0.994980661 1.006830878 46307944 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.811946015 0.841677283 0.818306401 0.834859825 0.84753599 0.797759171 0.866076019 0.807649351 357078325 xylc Frankia sp. CN3 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 1.147547608 1.143406756 1.072328519 1.122429011 1.090146764 1.139008196 1.120784669 1.094474787 1.103616116 1.102878698 1.129598423 1.13226728 1.094249405 1.094391216 1.094205816 1.118846604 1.123569189 1.100117155 386689541 mdlc Micromonospora lupini str. Lupac 08 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Micromonospora;species:Micromonospora lupini; 0.968583359 0.907919924 1.014280345 0.988644193 0.978733752 0.961820618 0.975274293 0.982534167 0.983030469 0.949238881 0.964511914 0.977974079 0.94146955 0.89285635 0.935864553 0.918514037 0.984041704 0.926532703 118590430 B_lactamase_A Stappia aggregata IAM 12614 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 0.801640943 0.79288049 0.782459816 0.819802845 0.846669158 16754883 ara Aspergillus oryzae Carbon Cycling Carbon degradation Hemicellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 0.938974717 0.913561461 0.889837369 0.893539069 0.81641191 0.957039318 0.946858035 0.885329004 0.832085722 0.831693544 0.897716248 0.888463654 0.879759603 0.888628274 186475229 FBP_aldolase Burkholderia phymatum STM815 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 0.952582503 0.967867877 0.967238809 0.946105142 0.903365377 0.995875037 0.950323594 0.953346402 0.976092422 0.976862061 0.963314899 0.953487893 0.9506536 0.903848152 0.945760968 0.968427621 0.984647657 0.987491003 156740928 fumarase_3HP4HB Roseiflexus castenholzii DSM 13941 Carbon Cycling Carbon fixation 3-hydroxypropionate/4-hydroxybutyrate cycle superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus;species:Roseiflexus castenholzii; 1.152608224 1.176571184 1.219924029 1.175299927 1.163534075 1.134197352 1.154187501 1.182515352 1.211864826 1.140692736 1.149466141 1.179477184 1.125725831 1.11846407 1.092412151 1.122686699 1.164988346 1.164618911 222451844 arsc Halorubrum lacusprofundi ATCC 49239 Metal Homeostasis Arsenic Detoxification superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halorubrum;species:Halorubrum lacusprofundi; 1.070527584 1.115256905 1.052153346 1.071013393 1.114085304 1.174658211 1.058546254 1.091016005 1.086718534 1.117129194 1.096297797 1.057886731 1.090529661 1.092935523 1.091324633 1.068812809 1.111746534 1.113421917 34497684 napa Chromobacterium violaceum ATCC 12472 Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Chromobacterium;species:Chromobacterium violaceum; 1.371763802 1.357344154 1.345853254 1.33625639 1.335725002 1.391405574 1.323940882 1.324361919 1.316061262 1.312528458 1.329459262 1.319725134 1.317266277 1.327576524 1.324592497 1.339043591 1.355451598 1.350248405 397735686 one_ring_23diox Rhodococcus sp. JVH1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 1.055961553 1.031126264 0.943830475 0.977496432 0.948894526 1.016532454 0.979395732 1.015475425 1.018098905 0.968436047 0.97106827 0.963459094 0.971700575 1.009363361 0.911418044 0.967303055 1.010443766 0.991433071 116608903 ara Arthrobacter sp. FB24 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 1.027012501 0.986600937 0.976154618 1.049661344 0.958812747 1.013868419 0.978110751 0.99485708 1.020068496 0.979005349 0.997940844 0.991156176 0.938503669 0.940371274 0.967071891 0.960101945 1.032687536 0.998300313 323365674 nifh uncultured microorganism Nitrogen Nitrogen fixation NA 0.80924832 0.805916985 0.77412013 0.810058584 0.813535224 0.823225086 0.773789897 383775092 B_lactamase_A Bradyrhizobium sp. S23321 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.84559061 0.822457513 0.882988543 0.896918946 0.85001851 0.867756415 0.834620749 0.838682506 0.855775303 0.831196351 0.79448061 0.880278532 0.798922817 0.807566254 0.780856319 0.810802579 0.860401668 0.873640112 114543921 pgk Roseovarius sp. HTCC2601 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pelagibaca;species:Pelagibaca bermudensis; 0.919243321 0.981351596 0.952612676 0.959927818 0.959058529 0.956199946 0.961053352 0.925554712 0.916610295 0.924199484 0.945396839 0.900815 0.907771902 0.876858138 0.857560717 0.898914904 0.918505032 0.936932092 328840478 vana Asticcacaulis biprosthecum C19 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis biprosthecium; 0.966723101 0.990745465 0.915786422 0.927031575 0.94271886 0.937003781 0.920654178 0.889549742 0.957519072 0.998866812 0.940618366 0.985250948 0.956400772 0.967617401 1.033336373 1.007366911 0.96665793 0.964128606 374426399 dehh109 Bradyrhizobium sp. WSM471 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.912292592 0.92280906 0.824376376 0.854403235 0.833349338 0.804942729 0.808913421 0.874284231 0.844061115 0.82893824 0.787554992 0.825763006 0.849255509 0.886549193 240861989 acetylglucosaminidase Rhizobium leguminosarum bv. trifolii WSM1325 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 0.903293937 0.916153398 0.817327244 0.860087485 0.853875862 0.833376512 0.847267162 0.826993042 0.839203752 0.814577333 0.888524435 0.886247678 329851777 xylanase Asticcacaulis biprosthecum C19 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis biprosthecium; 0.869507745 0.850750986 0.892603387 0.850986088 0.841083271 0.824852447 0.879587017 0.878789867 0.910587239 0.873725944 0.875507914 0.82562567 0.802068251 0.877841892 0.940024746 110006576 mcra uncultured euryarchaeote Carbon Cycling Methane Methanogenesis superkingdom:Archaea;phylum:Euryarchaeota; 1.070722137 1.17980499 1.113648546 1.09222281 1.078688171 1.113471777 1.050291274 1.074370342 1.10267351 1.086887335 1.052947502 1.051412245 1.059458298 1.15172475 1.116923698 1.061871826 1.087131587 1.093965223 62003555 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.301271729 1.337236357 1.285192696 1.2966545 1.294827413 1.31545714 1.295335127 1.283777009 1.28503722 1.269194699 1.29152735 1.315060313 1.276455089 1.256859664 1.293159144 1.279906361 1.281479844 1.266928839 295436822 mer Burkholderia sp. CCGE1002 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 0.810825886 0.880286663 0.817452973 0.877233118 0.854679563 0.797743012 0.81674765 0.79790533 0.832222211 0.892269092 238696552 pectinase (pectate_lyase) Yersinia kristensenii ATCC 33638 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia kristensenii; 0.924906593 0.913496521 0.891788557 0.928274278 0.924788402 0.890959004 0.921379012 0.922751411 0.940600373 0.909865673 0.899157586 0.978440429 0.866550353 0.802441068 0.847469619 0.923375285 0.86677729 94553902 poba Deinococcus geothermalis DSM 11300 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus geothermalis; 1.054129597 1.125125156 1.014493517 1.037603927 1.038470959 1.066061919 1.005899529 1.005981712 1.088597995 1.044647597 1.05117131 1.02908898 1.003306471 1.007464383 1.018265864 1.036494424 1.062422273 1.079368466 333486775 amyA Mycobacterium sp. JDM601 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 1.280877785 1.291280776 1.254748667 1.246510425 1.216887366 1.296391212 1.236594706 1.240800376 1.228626699 1.247018052 1.237122258 1.230115172 1.212840189 1.240106692 1.180720945 1.222664251 1.266168331 1.265367767 27529599 dehh109 uncultured bacterium Organic Remediation Chlorinated solvents NA superkingdom:Bacteria; 0.875680633 0.823912496 0.852276375 0.888834086 0.829598523 0.837371696 0.845381232 0.888867773 0.882515876 0.836209886 0.814797639 0.806280444 0.819425874 0.84575367 359835240 nfsa_2 Actinoplanes sp. SE50/110 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes; 1.185467306 1.15694383 1.111561369 1.166200842 1.073452099 1.147546224 1.114775736 1.143317178 1.135106656 1.126369355 1.091251227 1.134425543 1.050823056 1.109892445 1.051025126 1.081179834 1.166301902 1.15774842 126438200 scnabc Mycobacterium sp. JLS Organic Remediation Others NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 1.007963991 0.994678774 0.995696299 1.028042325 1.000726219 0.997928554 0.997637366 1.009407799 0.996447376 1.013525475 0.978708237 1.014099497 0.976524413 0.944702097 0.9676025 0.983473768 0.985366356 0.989916584 254424780 amie Synechococcus sp. PCC 7335 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 1.12080436 1.061686998 1.068915228 1.11136992 1.082463959 1.115591293 1.07945242 1.107267953 1.089196566 1.060020938 1.068979179 1.053894444 1.051864532 1.052158628 1.035577807 1.091190356 1.166509708 1.099680359 319948508 amyA Dietzia cinnamea P4 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dietziaceae;genus:Dietzia;species:Dietzia cinnamea; 1.165418989 1.158856634 1.086982541 1.140483144 1.067389011 1.147782449 1.080591861 1.140350327 1.151072378 1.124783988 1.078558783 1.128867982 1.046795944 1.085395742 1.063558423 1.087744083 1.153993338 1.161375414 86574074 mdlc Rhodopseudomonas palustris HaA2 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 0.815110705 0.827591952 0.836353567 0.800821666 0.792957982 116626517 RgaE Candidatus Solibacter usitatus Ellin6076 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 0.93071335 0.935991632 0.910849613 0.891001244 0.895737778 0.946923983 0.8677361 0.832086105 0.887474706 1.04708795 0.876610528 0.91469361 0.856425991 0.900353559 0.896986883 0.854557827 0.942387696 0.964120827 188028924 gdh Erwinia tasmaniensis Et1/99 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia tasmaniensis; 0.972998117 0.962322054 0.919555099 0.995388655 0.965616547 0.944338027 0.951017969 0.985719676 0.961941257 0.922542039 0.93617785 0.971853688 0.963627271 0.931512101 0.958053254 0.891583179 0.91491103 0.89719082 388436018 amyA Rhodanobacter spathiphylli B39 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Rhodanobacter;species:Rhodanobacter spathiphylli; 1.104999342 1.114789184 1.081534547 1.092120347 1.090226894 1.086370777 1.052495645 1.073223868 1.089191004 1.088263609 1.067207999 1.091896293 1.061086521 1.048045568 1.05185291 1.060873616 1.079172396 1.094901567 357400160 ppk Streptomyces cattleya NRRL 8057 = DSM 46488 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces cattleya; 1.221101207 1.226488901 1.195715779 1.198833667 1.196475552 1.219004856 1.175792203 1.175088654 1.191742899 1.146392541 1.182627119 1.191893959 1.163141524 1.142334603 1.136128549 1.149050922 1.222373631 1.162931485 39997196 codh Geobacter sulfurreducens PCA Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter sulfurreducens; 1.049229096 1.033650833 0.997751229 1.028841853 1.008348941 1.035205356 1.014826678 1.027546619 1.042034024 1.010757321 1.003023147 1.023228071 0.987454165 1.026799239 1.018354813 0.996711614 1.024808071 1.009902536 254475785 GAPDH_Calvin Ruegeria sp. R11 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 1.000083035 0.981826274 0.897909931 1.021196539 0.895866333 0.965638734 0.921012202 0.918118176 0.993684524 0.957253292 0.970570345 0.94384083 0.916004299 0.915372607 0.930970969 0.933953394 1.007013068 0.971714557 94983273 silicon_transporter NA Metal Homeostasis Silicon Transport 0.90333756 0.925763509 0.927861479 0.943765807 0.897061833 0.958548918 0.929721279 0.954605876 0.952732269 0.948963103 0.937318732 0.961585753 0.89701603 0.911949145 0.881732097 0.893706493 0.952207619 0.903056301 375101041 terc Saccharomonospora cyanea NA-134 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora cyanea; 0.925688202 0.893208196 0.889182974 0.890095378 0.887211626 0.900596328 0.889707867 0.884774127 0.896821407 0.903419979 0.879522987 0.913273537 0.809029413 0.875795122 0.826224866 0.898894761 0.919359204 103488178 mer Sphingopyxis alaskensis RB2256 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingopyxis;species:Sphingopyxis alaskensis; 1.043995598 1.052010118 1.063991869 1.080739165 1.082153844 1.069723125 1.054116651 1.049099715 1.047225176 1.028433759 1.037189891 1.053256418 1.056646055 1.025198941 1.086577306 1.037337054 1.062876995 1.057308878 114771560 ppx alpha proteobacterium HTCC2255 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 0.843907754 0.830080731 0.816215275 0.802085434 0.826847016 0.84245486 154367883 one_ring_23diox Pandoraea pnomenusa Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Pandoraea; 0.910598463 0.900439783 0.868997204 0.929717625 0.850604135 0.864801936 0.84803886 0.887981661 0.919626541 0.873778771 0.83228637 0.89345488 0.817676873 0.817624262 0.90058815 0.917946631 0.86180853 121713452 pel_Cdeg Aspergillus clavatus NRRL 1 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 1.06342859 1.05947527 0.994413431 1.054636729 1.005393713 1.057939719 0.985054768 0.982775181 0.999231364 1.034549565 1.047194726 1.035742596 1.021481627 1.034311855 0.931228394 1.028746603 1.043146929 1.035907021 365174308 dsra Synergistes sp. 3_1_syn1 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Synergistetes;class:Synergistia;order:Synergistales;family:Synergistaceae;genus:Synergistes; 1.128933502 1.103480264 1.358811625 1.162436764 1.234517679 1.112287099 1.119378773 1.121899735 1.229836103 1.076822044 1.084327405 1.17860566 1.067164335 1.090189927 1.105021747 1.150008034 1.125015142 1.095724584 319438335 amyA Dietzia cinnamea P4 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dietziaceae;genus:Dietzia;species:Dietzia cinnamea; 0.960114174 0.883154255 0.932683203 0.931809727 0.971330893 0.873989272 0.880956986 0.876245854 0.933506154 0.924934078 0.942255939 0.938637551 0.858467745 0.94204612 0.945398953 0.892505545 0.914948031 0.877273738 17863089 chitinase Vibrio sp. 5SM-1 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 0.90467589 0.847335925 0.883774074 0.885275427 0.873762518 0.91701852 0.865992139 0.842350129 0.874708939 0.884448501 0.873080257 0.8739883 0.873991497 0.85209144 0.896838643 0.888468649 0.869550851 0.886408416 299525670 arsc Hyphomicrobium denitrificans ATCC 51888 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium;species:Hyphomicrobium denitrificans; 0.980975357 0.907593696 0.879728752 0.866005152 0.911595571 0.865001703 0.925974166 0.947402538 0.969492719 0.894307504 0.878096611 0.89515372 0.890221755 0.895203238 0.849851026 0.872814125 0.893116989 0.929660226 259170208 ppx Lactobacillus antri DSM 16041 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus antri; 1.356252403 1.30041883 1.279529046 1.305304318 1.275571072 1.322909847 1.261667211 1.273896772 1.29352305 1.290026125 1.272956645 1.290382868 1.260814389 1.24145508 1.248073922 1.263565186 1.327129495 1.266828801 78093594 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.997746665 0.978852599 0.93954174 0.990269797 0.966289319 0.975189997 0.935232163 0.933246643 0.985703755 1.003139022 0.925833794 0.969554708 0.950016185 0.94389671 0.898303875 0.985317141 0.989016377 0.948846144 119537041 bphF1 Nocardioides sp. JS614 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 0.921095632 0.88214759 0.908533812 0.93651468 0.900780154 0.912702041 0.888757462 0.887332904 0.947765264 0.907728455 0.873948817 0.891043183 0.824350113 0.838934583 0.80709504 0.9220058 0.930073741 237886263 amyA Micromonospora sp. ATCC 39149 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Micromonospora; 1.068539607 1.090997031 1.077130589 1.025639397 1.053224285 1.065562142 1.039830216 1.058756658 1.052774502 1.015596169 1.015776831 1.015880599 1.026347392 1.004206187 1.020941565 1.021077381 1.075898479 1.049070486 148272660 endoglucanase Clavibacter michiganensis subsp. michiganensis NCPPB 382 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Clavibacter;species:Clavibacter michiganensis; 1.072602121 1.050724639 0.970229434 1.063166942 0.982607588 1.037455352 0.989724588 1.046349503 1.050361936 1.013975002 0.948381818 1.016382249 0.980371782 0.983581516 0.948634475 0.976111965 1.083743427 1.054054174 217330007 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.944254987 0.888786045 0.831420289 0.895096094 0.858676056 0.873632454 0.801244703 0.78771817 0.824506735 0.898029668 0.827501152 0.819917686 0.828636785 0.8686444 0.856083693 0.876836467 0.889341777 147850545 amyA Synechococcus sp. RCC307 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 1.017393256 0.968018314 1.003055732 0.991143785 1.002431368 1.034485352 1.011653267 1.015515887 1.00556341 0.997244387 0.982693567 0.994947394 1.010357874 0.940241327 0.936974773 0.949275105 0.983264219 372266771 mer Alteromonas sp. S89 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Microbulbifer;species:Microbulbifer agarilyticus; 0.903129018 0.865848052 0.93840457 0.973884195 0.90451436 0.95576351 0.908495289 0.880945535 0.925197049 0.913873433 0.863602494 0.877187705 0.898096091 0.902489547 0.897033182 0.875303884 0.963254396 0.943737971 28542633 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.817478978 0.828282059 0.844900491 0.804984923 0.877386941 0.817803618 0.859866906 0.797603982 0.862757147 0.829535381 0.869697341 0.834668476 0.793151761 0.836994426 0.802032373 0.791612599 0.866806694 0.898874648 238020388 fthfs Kingella oralis ATCC 51147 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Kingella;species:Kingella oralis; 0.787650841 0.832447303 0.830407487 0.798226737 0.83612867 0.822154603 0.861012273 0.803405826 0.841608644 0.810507277 0.820389345 0.807335805 0.814583054 0.875470649 0.797892511 295431983 linb Caulobacter segnis ATCC 21756 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter segnis; 1.401235278 1.363711345 1.360078284 1.366885375 1.348685064 1.389989967 1.354914087 1.357194931 1.359320506 1.376786175 1.357449032 1.371348518 1.338544018 1.320197251 1.333606464 1.365152533 1.394341662 1.373651955 109804237 mdlc uncultured bacterium Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria; 0.781791979 0.782363519 0.844163496 0.812252051 0.831663972 0.801009308 0.820297393 0.788960302 0.806676378 0.828756113 169793402 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.129369949 1.121180942 1.098403593 1.140732923 1.065437526 1.106857916 1.099418849 1.127471422 1.114898767 1.098082123 1.092658565 1.108447379 1.040000563 1.059289524 1.042966399 1.08284685 1.111170774 1.117102292 31337508 rd Dehalobacter restrictus Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Dehalobacter; 0.805401632 0.81139647 284034725 phytase Kribbella flavida DSM 17836 Phosphorus Phytic acid hydrolysis NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Kribbella;species:Kribbella flavida; 1.167345159 1.156140746 1.172707886 1.178307905 1.178420069 1.189913404 1.166403703 1.169033398 1.172993396 1.17323368 1.188693194 1.199534275 1.15844274 1.128541982 1.146716817 1.133916693 1.176725346 1.143037897 70930946 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.805384255 0.812717635 167355672 chitinase Shewanella halifaxensis HAW-EB4 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella halifaxensis; 1.092628015 1.043096947 1.034104119 1.047582613 1.054518178 1.018959176 1.001199041 1.004493323 1.014118496 1.008212866 1.008901412 1.03796012 0.95968457 0.951944663 0.891310351 0.999210999 1.048612891 1.02705433 146404230 FBP_aldolase Bradyrhizobium sp. BTAi1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 1.085559916 1.060747669 1.029866387 1.092006887 0.983474355 1.060238718 1.009549195 1.051511799 1.074917071 1.05753024 1.028560103 1.051656692 0.99351182 1.029756276 1.001445601 1.031498388 1.094503158 1.078761606 163259451 nhh Bordetella petrii Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella; 0.959645234 0.977484672 0.945923421 0.987417868 0.962995409 0.967722726 0.967537834 0.977621613 0.963816086 0.97281557 0.968945112 0.981974885 0.985042297 0.956168954 0.9033755 0.933810958 0.955171267 0.965562595 254043682 xylanase Hirschia baltica ATCC 49814 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Hirschia;species:Hirschia baltica; 0.876657085 0.859731187 0.920880122 0.95309623 0.835375945 0.850574368 0.82672988 0.894128704 0.850134819 0.8821666 0.864344548 0.834389803 0.851010445 0.824864733 0.832260938 0.882127323 0.872546365 258544989 cysJ Cardiobacterium hominis ATCC 15826 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Cardiobacteriales;family:Cardiobacteriaceae;genus:Cardiobacterium;species:Cardiobacterium hominis; 1.366868172 1.356126243 1.313273292 1.344953216 1.316559579 1.386590163 1.284706519 1.289161978 1.300060842 1.296875461 1.308686542 1.295972678 1.28267357 1.283071702 1.25113271 1.303686062 1.367059188 1.357467516 380732340 chitinase Corallococcus coralloides DSM 2259 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Corallococcus;species:Corallococcus coralloides; 0.984281169 0.932182133 0.958539172 0.991373124 0.982799451 0.956546065 0.956764891 0.954590999 0.98880822 0.987032138 0.943533579 0.982320019 0.963392844 0.904261762 0.888102252 0.960961708 0.96481857 0.942941873 397887563 xylc Pseudomonas fluorescens Q2-87 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 0.864618019 0.875148235 0.81506551 0.857108869 0.813395461 0.953499621 0.84426618 0.837396677 0.815815043 0.88756015 0.870240875 0.827963473 0.880552538 0.893170967 0.835660811 0.865061651 0.890759977 0.907266736 334901242 amyA Pyrococcus yayanosii CH1 Carbon Cycling Carbon degradation Starch superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Pyrococcus;species:Pyrococcus yayanosii; 1.387082484 1.357890941 1.385837495 1.385128736 1.342378874 1.363981688 1.354522396 1.390109863 1.348105126 1.343015992 1.360060454 1.400710014 1.334104039 1.334244116 1.331443386 1.356402635 1.343196983 1.314975883 62512300 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.927762996 0.948450762 0.906670478 0.905984913 0.883115226 0.900396567 0.873795497 0.869665172 0.890827995 0.862086315 0.899592822 0.86461619 0.878209731 0.875921833 0.87925977 0.88239076 0.915819953 0.893713525 124295071 protease_serine_fungi Hypocrea koningii Carbon Cycling Carbon degradation protein superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Hypocreaceae;genus:Hypocrea; 1.073047052 1.025028573 1.046606057 1.093882028 1.0373501 1.028639949 1.051675398 1.052848773 1.062733275 1.047992354 1.058703806 1.086606124 1.007222305 0.988656801 0.94688903 1.027158574 1.066802442 1.001484 387130280 tehb Methylophaga sp. JAM7 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Methylophaga; 0.795959861 0.784385073 0.791479536 56312125 nirb Azoarcus sp. EbN1 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 0.994199926 1.016593798 0.979083027 1.022600113 0.936817534 0.982918296 0.91957807 0.959080088 0.958147684 0.978480549 0.946352775 0.978279612 0.916723349 0.932218938 0.932202208 0.92649283 1.020030911 1.005948632 294937459 actin_Perkinsea Perkinsus marinus ATCC 50983 Other Phylogenetic NA superkingdom:Eukaryota;order:Perkinsida;family:Perkinsidae;genus:Perkinsus;species:Perkinsus marinus; 0.922347148 0.804973045 0.909812281 0.931375257 0.858844714 0.824151925 0.858629835 0.871011149 0.943589943 0.813141022 0.84127285 0.903481287 0.865340152 0.867871224 0.870628537 0.872636668 0.889557756 365859427 B_lactamase_A Acetobacteraceae bacterium AT-5844 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae; 1.044174127 1.040979806 0.984651863 1.082523133 1.027205656 1.066122109 1.031929104 1.048652236 1.032972669 1.006780326 1.026161975 1.017809738 1.0064008 0.969292799 1.035513266 1.035637881 1.055839303 0.999074256 217503544 urec Methylocella silvestris BL2 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Methylocella;species:Methylocella silvestris; 0.973074302 1.033373728 1.008229029 0.997222506 1.003552999 0.992904495 0.952850715 0.962626302 0.934188552 0.996052903 0.969070361 0.981834538 0.960508468 0.951790787 0.97744952 0.961302375 0.975103881 0.962474719 149939145 dsra uncultured bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.838420636 0.840087734 0.787206756 0.799232022 0.81797711 0.815225368 0.849329648 0.849577847 0.820189271 1805405 nasa Bacillus subtilis Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 0.996631264 1.01010281 0.991167684 1.028911683 0.961658383 0.965787716 0.982478467 0.999880514 1.006217789 1.009352112 0.965227288 1.023657529 0.983975837 0.98346585 0.954237083 0.968497985 1.001640194 1.031308398 192764492 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.251124471 1.23221201 1.211604952 1.216808075 1.190167751 1.252532363 1.181353162 1.190298148 1.201831761 1.170839785 1.179165076 1.182563185 1.174818639 1.18423971 1.161935002 1.185672169 1.243499019 1.243163844 389631140 bph Magnaporthe oryzae 70-15 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 0.760947556 0.83075098 357052910 pme Clostridium clostridioforme 2_1_49FAA Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium clostridioforme; 0.997865164 1.038157104 0.986517944 1.024797623 0.982784379 1.042288624 1.007168522 0.991660389 0.99197618 1.011660011 1.003538788 1.002928339 1.00425773 1.011336752 1.0048307 1.011449152 1.00988235 1.014813635 145297045 catechol Corynebacterium glutamicum R Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium glutamicum; 1.190260971 1.177082469 1.142500141 1.172879269 1.149780682 1.138513688 1.126447745 1.144529515 1.171255604 1.148924006 1.113264785 1.164648538 1.126378835 1.0955656 1.137786906 1.109771262 1.170701527 1.148354679 359794926 rubisco Mesorhizobium alhagi CCNWXJ12-2 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium alhagi; 0.993465204 1.0057935 0.976489321 1.009159549 1.02803255 0.991436541 1.048408408 1.030738147 1.01325172 0.999744651 0.97847357 1.027379635 0.999218864 0.916063093 0.966511043 0.928504443 0.975592468 0.959502109 311741987 bphc Aeromicrobium marinum DSM 15272 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Aeromicrobium;species:Aeromicrobium marinum; 0.796947953 0.880099115 0.780064107 0.842933306 0.814767543 0.829347809 0.793737002 0.830591436 0.829058359 302688289 endopolygalacturonase_fungi Schizophyllum commune H4-8 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 0.936877179 0.921672046 0.940173601 0.952000701 0.921847806 0.955728671 0.949205391 0.961189568 0.974874057 0.941480203 0.876976077 0.980650347 0.904809744 0.914961724 0.915541854 0.930387374 0.977711703 0.951109064 197782340 terc Streptomyces sviceus ATCC 29083 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 1.184940585 1.137427241 1.139895795 1.167665688 1.140567125 1.179948213 1.099261909 1.158550577 1.14533129 1.121803631 1.137603207 1.13530808 1.127828066 1.095204103 1.095818176 1.120639362 1.159615442 1.154888478 384100604 catechol_b Rhodococcus imtechensis RKJ300 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus imtechensis; 0.773634973 0.800061757 0.840904877 0.814124016 0.787748783 0.808786271 0.842548616 0.872172818 288335822 acetylglucosaminidase Prevotella melaninogenica D18 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella melaninogenica; 0.803923677 0.785452315 0.763008453 0.8160645 289208329 SoxB Thioalkalivibrio sp. K90mix Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio; 1.007608192 0.970641952 0.987509416 1.042390813 1.079471093 0.957420532 1.084971428 1.003120002 0.985062773 0.983553103 0.964521553 1.027447644 0.939110295 0.918945917 0.913378876 0.92865715 0.9831665 0.958510699 381198834 xylg Sphingobium yanoikuyae XLDN2-5 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium;species:Sphingobium yanoikuyae; 1.002402596 1.020430584 0.990346447 1.035923066 0.988067971 0.99274811 0.994367645 1.004932045 1.019987547 0.983440273 0.996986488 1.017241309 0.934526653 0.908668788 0.855450072 0.938796913 0.982798975 0.929445797 58416260 one_ring_12diox Achromobacter xylosoxidans Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter; 0.808280269 0.826778374 0.782837907 0.831824872 0.926495005 1.007210068 0.805336141 0.935797272 0.80397799 0.811553193 0.829019693 111611621 nitrilase Verminephrobacter eiseniae EF01-2 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 1.144659349 1.142041217 1.074883638 1.10042122 1.103619953 1.115053882 1.089783238 1.109951813 1.103137158 1.097968938 1.07473198 1.075966163 1.058980981 1.082724135 1.023305458 1.075010128 1.122433893 1.155512237 145320514 ppx Enterobacter sp. 638 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 0.984127866 0.966657393 1.016269715 1.051221722 1.027137182 0.929545529 0.972376967 0.986607295 0.9891504 1.007462773 1.014958088 1.048680396 1.001968318 0.967946533 0.991727593 0.963949078 1.022676739 0.945089091 375057527 PRI Rhizobium sp. PDO-076 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 0.778239867 0.805381188 84666915 urec Rhodobacterales bacterium HTCC2654 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Maritimibacter;species:Maritimibacter alkaliphilus; 1.254383761 1.246218403 1.218555682 1.260300345 1.234155745 1.263449884 1.219157881 1.249273221 1.23652143 1.207475516 1.243634331 1.230681019 1.211968646 1.198623733 1.173862319 1.213966979 1.249143361 1.229873327 363413209 nosz Acidovorax sp. NO-1 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 0.854102455 0.811385308 0.865302586 0.801310545 0.828756962 0.85145148 0.837608996 0.823834809 0.834936322 0.851286824 309790711 PRI Oscillochloris trichoides DG6 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Oscillochloridaceae;genus:Oscillochloris;species:Oscillochloris trichoides; 0.82325242 0.817757487 0.815941622 0.819191591 0.811168839 0.795321796 0.825603083 229473042 dsra uncultured bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.897007543 0.894009622 0.862969834 0.91565217 0.834012031 0.836822318 0.880551926 0.8836769 0.903732238 0.905384703 0.841854744 0.885787583 0.850228112 0.851750218 0.892870501 0.937612417 71383720 nasa Synechococcus sp. WH 7803 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 0.999942501 0.993876836 0.943116019 0.956383429 0.944422968 0.995634649 0.976697111 1.011173962 0.998013656 0.974333742 0.925998127 0.964048465 0.892565958 0.908913345 0.854577658 0.907427065 0.967944077 1.011920666 239800225 vana Variovorax paradoxus S110 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 0.977715775 0.940318047 1.001806046 0.973526893 0.924055218 0.964172852 0.85913851 0.901608901 0.952765833 0.952721971 0.931722816 0.907098587 0.925277585 0.90675619 0.904834164 0.87680375 0.975979291 0.960235677 307154095 amyA Cyanothece sp. PCC 7822 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 1.053625391 1.030869823 1.042079195 1.079750834 1.030408201 1.030659068 1.03913371 1.048425579 1.019719982 1.023564033 1.008881964 1.042267636 1.004407283 0.949982079 0.950980371 1.027859098 1.101020284 1.378078825 146280016 FBPase Rhodobacter sphaeroides ATCC 17025 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 1.612702205 1.580417233 1.56681317 1.577753993 1.559562089 1.579786239 1.526890554 1.57466566 1.567261523 1.536287485 1.555137222 1.558591106 1.527247732 1.514359644 1.554422101 1.525571243 1.583546568 1.531524142 157084076 arylest Citrobacter koseri ATCC BAA-895 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter koseri; 1.108233016 1.134620921 1.115472357 1.082305922 1.083259543 1.110715921 1.077934177 1.0831932 1.070279904 1.067550171 1.074646288 1.070926846 1.067559014 1.036059548 1.043813493 1.065259945 1.091094565 1.106987844 90103735 arylest Rhodopseudomonas palustris BisB18 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 0.849087158 0.989644464 0.889611997 0.867229428 0.796660745 0.95684871 0.865748786 0.820157553 0.809259571 0.797256349 0.858604876 146195550 napa Bradyrhizobium sp. ORS278 Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 1.185559963 1.170413527 1.198661218 1.225845788 1.185215874 1.175779975 1.195445169 1.201402826 1.191188419 1.154694229 1.203230022 1.212224841 1.176698904 1.158982506 1.205612961 1.199994705 1.181004926 1.163197247 229362740 cysJ Pseudomonas fluorescens SBW25 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 1.176794186 1.134054529 1.142795963 1.104262881 1.135516832 1.147354727 1.126186296 1.082741566 1.082231174 1.171619686 1.138191777 1.101455336 1.072649231 1.100232633 1.019931449 1.106255926 1.152903557 1.134444588 32307925 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.123322544 1.094963318 1.067705491 1.118408114 1.056783093 1.092512896 1.090591243 1.079806795 1.118048771 1.057525652 1.12031293 1.091558285 1.05064863 1.057034371 1.048345907 1.082481195 1.107454095 1.062249244 160884192 xylanase Bacteroides ovatus ATCC 8483 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides ovatus; 0.847598436 0.823068386 145571612 atzb Pseudomonas stutzeri A1501 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 1.190942362 1.181801902 1.172452938 1.182199968 1.154787911 1.21103796 1.162809703 1.167203223 1.174255392 1.173145895 1.164854957 1.182392091 1.163221267 1.163719529 1.163954477 1.181133524 1.186647704 1.176172651 333026555 phytase Streptomyces sp. Tu6071 Phosphorus Phytic acid hydrolysis NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 0.807423303 0.79434594 50897464 inulinase Bacillus subtilis Carbon Cycling Carbon degradation Inulin superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 0.92305314 0.938004481 0.939107004 0.889051406 0.919091945 0.950298563 0.906589289 0.897856024 0.909661738 0.971442572 0.942303064 0.931250052 0.883943804 0.949275744 0.911660482 0.91460821 0.928965801 0.977637168 82791409 alkb uncultured bacterium Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria; 0.763365969 0.777977381 0.82041056 0.809391101 0.787904154 0.82008085 0.8156032 0.787145881 0.817284282 151302153 aps_apra Desulfovibrio sp. HRS-La4 Sulfur adenylylsulfate reductase NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 1.063538777 1.059803595 1.059941652 1.101702917 1.079076802 1.057830023 1.067404858 1.083282408 1.076657515 1.033494758 1.075437401 1.056999859 1.044198925 1.020489147 1.042171748 1.003047066 1.030685565 1.002540722 89344921 rubisco Rhodoferax ferrireducens DSM 15236 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Albidiferax;species:Albidiferax ferrireducens; 0.973391756 0.9683168 0.974459194 1.000259333 0.987686991 0.981805913 0.996516697 1.004079898 1.017069693 1.013944007 0.99963208 0.969072499 0.969189003 0.934910731 0.925434307 0.946855039 0.990767923 0.967873098 394754844 mdlb Actinomyces massiliensis F0489 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces massiliensis; 0.82707685 0.873592932 0.880998222 0.84785065 0.845433218 0.84553508 0.860945464 0.845323394 0.814262027 0.839715577 0.827343208 0.835133999 0.853391356 0.840390132 119671220 nagg Azoarcus sp. BH72 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 0.910878435 0.918270394 0.91012961 0.883193791 0.881242495 0.937938819 0.866603975 0.953502732 0.935857181 0.932617613 0.867890758 0.917195727 0.871523085 0.907960432 0.806534282 0.869390276 0.933582926 0.944732905 322834518 chitinase Rahnella sp. Y9602 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Rahnella; 0.825524949 0.842880687 0.820929662 0.834111297 0.869055668 0.889019843 0.891023174 0.899748333 0.843947778 0.819184927 0.809556064 0.843048167 0.820124087 0.857033243 0.904479951 157804789 APS_AprB endosymbiont of Inanidrilus exumae Sulfur adenylylsulfate reductase NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 0.814518887 0.826347655 0.87293042 0.809482109 0.813300837 0.808429717 0.823799002 0.833072649 0.852967413 0.823297889 78046442 arylest Xanthomonas campestris pv. vesicatoria str. 85-10 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas euvesicatoria; 0.933471466 0.911830963 0.82497685 0.924629785 0.864031304 0.885657904 0.904947274 0.888736758 0.914671236 0.888193817 0.89620782 0.910415797 0.814420066 0.848376564 0.793535745 0.833736627 0.913573769 0.855762198 290957276 amyA Streptomyces scabiei 87.22 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces scabiei; 1.116226945 1.11463212 1.107403062 1.094556511 1.0597689 1.133118587 1.052290327 1.095268514 1.105297393 1.103219676 1.073053275 1.062739556 1.047467653 1.083652698 0.995806282 1.06163049 1.118836138 1.100932215 359426031 catb Gordonia amarae NBRC 15530 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia amarae; 1.095889397 1.144470751 1.157750132 1.067140304 1.0962726 1.163357522 1.065482333 1.088896892 1.056964653 1.131383483 1.093036203 1.108992704 1.108971304 1.108743338 1.136879026 1.118765897 1.171218241 1.133529479 76803768 alkb uncultured bacterium Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria; 0.894573706 0.928573483 0.909051287 0.898011552 0.854363104 0.865021396 0.863339491 0.947732324 0.925945296 0.893164694 1.153112704 0.915673674 0.794669501 0.856056329 0.806935793 0.82869261 0.903348257 0.941931909 91690021 pcag Burkholderia xenovorans LB400 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 0.810065431 0.846597573 0.872689733 0.83484194 0.786101684 0.830612919 0.854054432 0.810846786 0.85184674 0.837331365 0.834513456 0.906329172 328843411 xylanase Asticcacaulis biprosthecum C19 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis biprosthecium; 1.157415372 1.117819594 1.075703392 1.103896368 1.07579036 1.119206077 1.071024476 1.090108263 1.109882094 1.071215259 1.078161744 1.103401994 1.072388617 1.071732498 1.074378733 1.095942688 1.116719518 1.083437086 91795559 vana Chromohalobacter salexigens DSM 3043 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Chromohalobacter;species:Chromohalobacter salexigens; 1.331066929 1.293715106 1.290480591 1.309461168 1.268503113 1.330145243 1.283986698 1.297152737 1.274159357 1.264659693 1.266201934 1.276862868 1.269373746 1.269074091 1.271308849 1.29291861 1.32043672 1.272163717 121998847 arylest Halorhodospira halophila SL1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Halorhodospira;species:Halorhodospira halophila; 0.808292501 0.919936194 0.883232947 0.849878983 0.888270591 0.856658144 0.847342186 0.833379777 0.801363683 0.903441 0.892324756 0.880856387 0.885855474 0.88113102 0.831707316 0.842540937 0.798472772 0.868323284 383510816 xylj Thermus thermophilus JL-18 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus;species:Thermus thermophilus; 0.799032993 0.821886845 0.821063388 0.840421439 0.823752823 0.839669889 0.869671858 0.852993013 0.828666822 0.807706053 0.839850657 0.80794192 0.818986997 0.856637234 0.827746022 0.804010868 0.82308322 74057997 dsrB Thiobacillus denitrificans ATCC 25259 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus;species:Thiobacillus denitrificans; 0.989880102 0.978175751 0.998042286 1.000398776 0.996705449 0.993670472 0.992506747 0.986271846 0.992218641 0.993136907 0.928940492 1.005214306 0.925893128 0.922445659 0.906768349 0.936454342 0.95768044 0.960328432 373101361 catechol_b Cupriavidus basilensis OR16 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus basilensis; 0.922804789 0.940515841 0.907272653 0.883995827 0.879100587 0.967902277 0.896135848 0.815190729 0.857659424 0.962385067 0.909366095 0.913978207 0.885434264 0.84161483 0.835610519 0.890461943 0.911866584 0.946073528 359719175 amyA Geobacillus caldoxylosilyticus Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 0.889077108 0.914983364 0.799236293 0.939481111 0.845392395 0.834891186 0.875138126 0.91569622 0.9348684 0.838098221 0.833546824 0.90711148 0.863798015 0.980073825 0.855836277 221735169 ppx Agrobacterium vitis S4 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium vitis; 1.118872996 1.046554817 1.058677526 1.087599508 1.07481688 1.083527275 1.088362942 1.088534705 1.067982345 1.050081879 1.062255045 1.054020813 1.035252584 1.030825549 1.016439961 1.027312157 1.061919873 1.067098825 196194608 alkb Alcanivorax sp. DG881 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax; 0.768932105 0.855055539 0.839085152 0.819180511 119391421 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.097864102 1.077038456 1.060318758 1.06317922 1.070473244 1.1043491 1.037297049 1.026192507 1.056059946 1.067848209 0.9964126 1.033250276 0.982540852 1.001938753 0.995512111 0.999524578 1.088085215 1.108511191 260642396 acetylglucosaminidase Bacteroides finegoldii DSM 17565 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides finegoldii; 1.067947398 1.012100421 1.098248981 1.139004407 1.064875459 1.145597115 1.098117869 1.098546484 1.103788409 1.152692141 1.127869024 1.125868428 1.089369164 1.116576777 1.081113838 1.073300948 1.100899636 1.065017014 312602251 ben_bcla Burkholderia rhizoxinica HKI 454 virulence NA NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia rhizoxinica; 0.851482111 0.87832566 0.899978581 0.885731357 0.846325167 0.906719681 0.863183122 0.810600717 0.871464627 0.941002081 0.901540458 0.90223406 0.806779302 0.816216253 0.810866702 0.91039027 0.860442172 255292491 xylg uncultured bacterium Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria; 1.095133771 1.08451713 1.072737423 1.080854198 1.058820367 1.08499943 1.065031333 1.052395561 1.070444081 1.046689425 1.032553264 1.076525544 1.030716529 1.029663519 0.984332285 1.053560894 1.069842606 1.060096791 84778341 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.040192554 1.012164693 1.033230498 0.984352343 0.947624736 0.976314697 0.965927399 0.977917939 0.994305129 0.972339917 0.969957038 0.991571385 0.903385732 0.95412447 0.924422543 0.95540742 0.975445649 1.034464736 390616436 amyA Mycobacterium chubuense NBB4 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium chubuense; 1.218483842 1.261586394 1.183102455 1.259528263 1.219789215 1.270211868 1.161778019 1.084160197 1.226573097 1.238024405 1.208878298 1.245363137 1.201829156 1.216548986 1.16349155 1.230037356 1.231265393 1.230889107 214031033 FBP_aldolase Ruegeria sp. R11 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 0.919945243 0.86753795 0.92124846 0.939932368 0.934516722 0.923630067 0.909482821 0.928403303 0.905784984 0.850973993 0.85868328 0.892436471 0.918548163 0.848580974 0.890804246 0.886260572 0.940774835 0.91512497 109452441 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.870286595 0.891295382 0.887400002 0.872492892 0.837398108 0.833938609 0.846912412 0.860691016 0.922601156 0.844864085 0.818407661 0.822709997 0.885171019 0.838928085 0.851149164 0.853249553 0.909518077 87247613 aoxb Mesorhizobium sp. DM1 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium; 1.100669562 1.0854466 1.070504249 1.074534042 1.080100398 1.134976512 1.071483665 1.076643687 1.052551793 1.090882424 1.076229774 1.046077988 1.039450612 1.034476768 0.965305295 1.062655646 0.996351779 1.050758401 159186182 xyla Agrobacterium tumefaciens str. C58 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 1.033165785 1.071575645 1.045854163 1.008705997 1.057396312 1.055685104 1.061422032 1.041170577 1.033890405 1.105749912 1.072212878 1.04470957 1.017763444 1.032611419 1.040613459 1.026217307 1.045736753 1.082359036 198254500 phn Octadecabacter antarcticus 307 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 1.041569063 1.052255675 1.009664278 0.976464334 0.991186683 1.020465736 0.94149733 0.950184078 0.979545503 1.014704048 0.995277063 1.009210321 0.99696931 0.993100662 0.965775687 0.966968499 1.049903828 1.072939695 50982408 pmoa uncultured bacterium Carbon Cycling Methane Methane oxidation superkingdom:Bacteria; 0.940647281 0.901343285 0.920274318 0.916057639 0.926547628 0.933117064 0.879188828 0.866529233 0.836198377 0.914966929 0.891011885 0.905278162 0.906227388 0.940895742 0.912061424 0.921484371 0.888875755 0.888319008 291090765 arsc Edwardsiella tarda ATCC 23685 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Edwardsiella;species:Edwardsiella tarda; 0.789969904 0.856937253 0.819080164 0.809735533 0.83553447 0.940757648 0.818843951 0.895285868 177842236 ara Opitutus terrae PB90-1 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 1.005791838 0.97801268 0.940608893 1.009763406 0.92778627 0.965189861 0.929835047 0.928972923 0.940233116 0.978506084 0.944544265 0.918918665 0.906972845 0.942580618 0.870729127 0.942735554 0.982956292 0.99018284 255921001 ara Actinosynnema mirum DSM 43827 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Actinosynnema;species:Actinosynnema mirum; 1.053186186 1.018051756 0.994020672 1.076429732 0.975264229 1.036063353 1.02657354 1.043114605 1.029793792 0.99085808 0.948096191 1.044207906 0.95893809 0.963347873 0.885577251 0.919334725 1.055432742 1.033469063 294146631 endoglucanase Sphingobium japonicum UT26S Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium;species:Sphingobium japonicum; 0.943770955 0.911202915 0.890497341 0.912906975 0.938336685 0.960701801 0.976711122 0.971821624 0.896980628 0.891209434 0.9224333 0.907380459 0.890281256 0.859617508 0.821951623 0.893676151 0.914090439 258655033 amyA Nakamurella multipartita DSM 44233 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nakamurellaceae;genus:Nakamurella;species:Nakamurella multipartita; 1.009767147 0.992584634 0.987026002 1.019551077 1.005226049 0.970940417 0.977516593 1.000521597 1.029414974 0.970911791 1.006636465 1.054597349 0.976510337 0.967237774 0.940190692 0.960673477 1.024970193 0.944272839 76057023 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.939560459 0.913675754 0.952261455 0.933664271 0.85990094 0.912462724 0.854463493 0.871063377 0.910303954 0.878005556 0.867258587 0.993773598 0.886106526 0.870944463 0.8577133 0.918737507 0.941514612 0.928860112 88706368 PRI Congregibacter litoralis KT71 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Congregibacter;species:Congregibacter litoralis; 1.172059024 1.152934746 1.163123665 1.19646668 1.165225121 1.18347734 1.164957234 1.15037634 1.158900386 1.181162357 1.171649978 1.186269117 1.160506688 1.1772139 1.154266213 1.167753816 1.160842309 1.162581573 338751276 chrr Acetobacter tropicalis NBRC 101654 Metal Homeostasis Chromium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acetobacter;species:Acetobacter tropicalis; 0.936675969 0.925551814 0.944342311 1.008680137 0.923628969 0.914928107 0.945332264 0.994172251 0.957940438 0.909905638 0.914029021 0.951223421 0.892517288 0.846781921 0.889232263 0.873330542 0.932842043 0.934109489 304393540 GAPDH_Calvin Ahrensia sp. R2A130 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ahrensia; 0.816859784 0.790397768 0.832096638 0.828734286 83308655 amoa uncultured bacterium Nitrogen Nitrification NA superkingdom:Bacteria; 1.110972476 1.059766481 1.087909478 1.125575067 1.103898984 1.113796266 1.115192039 1.14740028 1.101803614 1.100023815 1.098492281 1.126006028 1.100843483 1.103448696 1.131992986 1.149863103 1.10759122 1.073923184 254431984 terc Cyanobium sp. PCC 7001 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanobium; 0.904142462 0.888108152 0.895412204 0.940044442 0.894473628 0.916212338 0.891194199 0.936410536 0.912267311 0.885625854 0.868598244 0.885189201 0.862916614 0.880310066 0.94835025 0.889872611 0.964361717 0.904537595 1004217 RgaE Aspergillus aculeatus Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 1.049266243 1.007660643 1.013625025 1.070783378 0.997178927 1.001524582 0.985689993 1.002998546 1.044831143 1.013060724 1.011165697 1.038564382 0.987165638 0.999813455 0.953414523 1.000378726 1.054554917 1.022239431 374413660 dsra uncultured prokaryote Sulfur sulfite reduction NA 0.865062604 0.829951187 0.842921715 0.813625559 0.836792404 0.816647792 0.824005812 0.802848506 0.777197619 0.822384417 0.831531002 238713497 fthfs Yersinia bercovieri ATCC 43970 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia bercovieri; 1.027148434 1.059674818 1.0228404 1.039872701 1.061528222 1.059729943 1.033752135 1.038823975 1.047893698 1.035094966 1.017043093 1.057085436 0.977277278 0.971389911 0.973690151 0.979227678 1.013596512 1.073072727 220907038 CsoS1_CcmK Cyanothece sp. PCC 7425 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 1.203333429 1.155314649 1.163256761 1.216034214 1.160194159 1.166597363 1.170207233 1.145679225 1.166236386 1.146730426 1.184354017 1.175395174 1.15121843 1.157532639 1.113043 1.16976775 1.184905151 1.155118863 319942989 cysJ Lautropia mirabilis ATCC 51599 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Lautropia;species:Lautropia mirabilis; 0.914525434 0.905886142 0.918250843 0.91224276 0.908851708 0.953124836 0.909964946 0.872720301 0.932462669 0.910770951 0.913309597 0.923426955 0.841437868 0.876007429 0.857419536 0.868496852 0.897355185 422314221 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.945081711 1.02689865 0.911072827 0.985484913 0.98619742 0.934962123 0.935958229 0.848352305 0.974468577 0.989248851 0.889885676 0.997771222 1.009084832 0.9650329 0.888482847 0.913178467 0.965771359 0.983497617 89317011 pcag Mycobacterium flavescens PYR-GCK Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 1.114322023 1.117842107 1.110030907 1.113931219 1.115614977 1.137688157 1.112755408 1.12368126 1.119348855 1.123771074 1.119704918 1.103777604 1.112183517 1.086898761 1.022501635 1.058682649 1.123607607 1.102855232 359400768 bphc Novosphingobium pentaromativorans US6-1 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium pentaromativorans; 0.876490949 0.899642616 0.838257843 0.819377682 0.80027678 0.823191848 0.847068512 0.872679268 0.896064578 0.833354833 0.782723873 0.818809853 0.807408382 0.894917533 0.890437591 147886004 phenol_oxidase uncultured bacterium Carbon Cycling Carbon degradation Lignin superkingdom:Bacteria; 0.975379383 0.974585898 0.9453941 0.987712512 0.960676519 0.989421455 0.996822098 0.969570449 0.961473426 0.971399269 0.970221327 0.975412066 0.96178512 0.921591673 0.950574199 0.932762947 0.960960366 118590152 ppx Stappia aggregata IAM 12614 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 0.82599347 0.866181825 0.863057062 0.836606076 0.837720362 0.850759334 0.802321822 0.847047394 0.87813956 0.897003159 28872010 urec Pseudomonas syringae pv. tomato str. DC3000 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 1.340545324 1.303048194 1.312991422 1.300566575 1.280218847 1.328460077 1.288041651 1.297615132 1.284144708 1.28163635 1.290084039 1.310477337 1.27740833 1.265489611 1.283089995 1.307664551 1.32594588 1.278108529 347004709 phenol_oxidase Thielavia terrestris NRRL 8126 Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Thielavia;species:Thielavia terrestris; 1.136714516 1.109975331 1.08774282 1.143799932 1.091769373 1.156025396 1.090445677 1.128355721 1.122292189 1.115201498 1.087199275 1.120147306 1.078390444 1.099516362 1.076004749 1.101899274 1.13119522 1.105641595 114326711 fthfs Granulibacter bethesdensis CGDNIH1 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Granulibacter;species:Granulibacter bethesdensis; 1.021637635 1.017325318 0.966854101 1.026333978 0.97282813 0.981072373 0.968637199 0.987779513 1.020045698 1.001303361 0.959651647 0.995905318 0.957720289 0.935976071 0.934760065 0.956528468 1.002779369 1.017910468 301320311 amyA Olsenella uli DSM 7084 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Olsenella;species:Olsenella uli; 1.155688088 1.147083433 1.114316023 1.130974996 1.076754454 1.111972741 1.062499947 1.104302571 1.109907021 1.109065648 1.095859247 1.119891354 1.057172316 1.077861595 1.045914754 1.054534487 1.159697412 1.113174917 332297253 amyA Treponema brennaborense DSM 12168 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema brennaborense; 0.785792657 0.84966255 0.798906778 0.811912954 0.776968372 0.827586255 0.770419913 0.820837164 270506317 amyA Streptosporangium roseum DSM 43021 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 1.173347308 1.172060113 1.152746589 1.141276004 1.120470546 1.195915834 1.096519643 1.145861003 1.143834418 1.151395236 1.169851876 1.149223779 1.10495117 1.137860548 1.113365253 1.118202417 1.163664932 1.154072357 365425162 amyA Bradyrhizobium sp. STM 3843 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 1.15396885 1.103025685 1.114748517 1.152915593 1.110889344 1.130785433 1.110308943 1.140888109 1.13312451 1.090301294 1.109693861 1.134264257 1.099066711 1.075366531 1.062676695 1.079187119 1.158394416 1.06694935 403654899 tfda Mycobacterium fortuitum subsp. fortuitum DSM 46621 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium fortuitum; 0.850278446 0.808289032 0.836681128 0.876079186 0.85984808 0.843538412 0.849399541 0.87347478 0.881378404 0.838271169 0.833931699 0.86591207 0.870254652 0.865377228 110648681 alkh Alcanivorax borkumensis SK2 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax;species:Alcanivorax borkumensis; 0.772071506 0.935182017 0.822461417 0.841546884 0.840967976 0.84551058 0.826730958 0.828738319 0.800978958 0.832237878 0.813874181 0.831980086 0.861840926 0.856062284 400193762 mdlc Morganella morganii subsp. morganii KT Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Morganella;species:Morganella morganii; 1.142843591 1.099879854 1.0940463 1.12235116 1.070658997 1.093946795 1.077001088 1.132550683 1.107392835 1.115524812 1.101797053 1.121486873 1.058182225 1.064264962 1.080339338 1.12107747 1.125255893 1.136029259 270281306 badh Pediococcus acidilactici 7_4 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Pediococcus;species:Pediococcus acidilactici; 0.934080436 0.849141431 46307986 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.236857825 1.215334644 1.18422265 1.203793673 1.190216317 1.170753038 1.124449413 1.175498525 1.179790891 1.181147197 1.161954787 1.182796822 1.13900986 1.13719626 1.139973314 1.17305074 1.1966113 1.182272339 163794540 merb alpha proteobacterium BAL199 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 0.919822444 0.860712719 0.872752048 0.904151552 0.835277072 0.848914273 0.825954934 0.894652233 0.881639345 0.903395773 0.812663803 0.888025972 0.835064274 0.884893748 0.875209506 124007002 gdh Microscilla marina ATCC 23134 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Microscilla;species:Microscilla marina; 1.059420012 1.073986361 1.04123088 1.09807871 1.03170441 1.092607849 1.046867326 1.046739927 1.038482793 1.05003363 1.056637978 1.092178866 1.058347313 1.010502991 1.001091694 1.05224211 1.088748028 1.034064163 392450360 terc Pelosinus fermentans A11 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Pelosinus;species:Pelosinus fermentans; 0.788469281 0.844297006 0.937102489 0.844796085 0.831837738 0.864910808 0.806105175 0.933006833 0.814557302 0.881271257 0.888975215 259506943 nitro Corynebacterium efficiens YS-314 Organic Remediation Others NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium efficiens; 1.066782565 1.027962379 1.052020904 0.975316397 1.069031682 1.079819482 1.081760591 1.070249264 1.014991422 1.045274978 1.051753063 1.030846394 1.019340331 0.989285119 0.958251302 0.950665903 1.012069365 0.998595675 295827512 acetylglucosaminidase Streptomyces sp. SPB74 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 1.291726072 1.296454405 1.25528814 1.297203553 1.257502232 1.314276018 1.264501498 1.252558491 1.232167212 1.277108416 1.26551275 1.286922574 1.261860341 1.258679978 1.241528015 1.265586658 1.282180759 1.277088276 328529727 amyA Actinomyces sp. oral taxon 170 str. F0386 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 170; 1.052241855 1.123741186 1.046654748 1.039189609 1.051137745 1.095479538 0.998063516 1.015868925 1.04959723 1.062717524 1.017657363 1.063375502 1.014599201 1.039397775 1.024354782 1.04444976 1.047884228 1.098607415 197712686 pcpb Streptomyces sviceus ATCC 29083 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 1.118353234 1.064660588 1.060126515 1.093865292 1.013363039 1.061961802 1.014441641 1.037753141 1.072941282 1.044496987 1.017119296 1.083200427 0.984539589 1.036617127 0.980339708 1.018009118 1.086264319 1.060751636 114227803 GAPDH_Calvin Alkalilimnicola ehrlichii MLHE-1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Alkalilimnicola;species:Alkalilimnicola ehrlichii; 1.003547963 1.024437385 1.048410454 1.025339379 1.051923583 1.068209768 1.055788856 1.022570067 1.017460213 1.049727015 1.035233028 1.041316248 0.985597365 0.994691265 0.970232883 1.00045676 1.059927208 1.053183523 51892092 cellobiase Symbiobacterium thermophilum IAM 14863 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XVIII. Incertae Sedis;genus:Symbiobacterium;species:Symbiobacterium thermophilum; 1.044656677 1.070626501 1.036915705 1.005877436 1.055375833 1.03444189 0.961369447 1.020340534 1.037369364 0.959254189 1.019131321 1.001348301 0.960445938 0.950505183 0.958737906 0.976988492 1.023768591 344198424 FBPase Acidithiobacillus ferrivorans SS3 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus ferrivorans; 0.807558621 0.862762193 0.831773966 0.778174768 0.827317859 0.841819342 133740357 arsc Herminiimonas arsenicoxydans Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herminiimonas; 0.796040749 0.825988824 0.779357955 0.818442029 378763716 acetylglucosaminidase Sinorhizobium fredii HH103 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium fredii; 0.81009523 0.795971861 0.831407768 0.81909112 198267318 atzb Octadecabacter antarcticus 238 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 1.024763429 1.041764803 1.015803497 1.042716718 1.020585798 1.045798715 1.037920755 1.045383873 1.044827802 1.014742661 1.023590633 1.021244524 0.993116295 1.002819782 0.999431966 0.982177046 1.010452768 1.012517365 336105252 ara Cellvibrio] gilvus ATCC 13127 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas;species:[Cellvibrio] gilvus; 0.81082839 0.858359308 0.77938421 0.827983207 0.803029193 0.803979406 0.836045823 329851663 alginase Asticcacaulis biprosthecum C19 Carbon Cycling Carbon degradation Alginate superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis biprosthecium; 0.844140278 0.82229579 0.816869313 0.836024989 0.824380854 1.218725683 0.792178336 0.845101654 149142732 bend Roseovarius sp. TM1035 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 1.051565655 1.040350567 0.998953874 1.025739894 1.010713766 1.042035687 0.995707051 0.968113456 1.042446637 1.012478958 1.004987569 1.007646968 0.982105074 0.997856317 1.032111066 1.006521985 1.036199976 1.045584941 73539513 xylj Ralstonia eutropha JMP134 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 1.151156263 1.140898681 1.091409273 1.139001208 1.162129323 1.134730273 1.171285946 1.158238078 1.131407736 1.108561684 1.123959021 1.142014971 1.105356312 1.106588396 1.134021039 1.132472643 1.10949444 1.117213755 39648290 soxY Rhodopseudomonas palustris CGA009 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 1.563987531 1.498474839 1.504473619 1.497285378 1.464810969 1.541950222 1.469623082 1.478432149 1.489381797 1.480811611 1.490112397 1.47084363 1.455159895 1.433910404 1.456322666 1.466496579 1.541211539 1.470096188 260089470 acetylglucosaminidase Streptomyces flavogriseus ATCC 33331 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces flavogriseus; 1.052845132 1.072763854 1.064489452 1.010726228 1.064063231 1.105230394 1.048142241 0.997296495 1.024482273 1.094065316 1.004450085 1.008121849 1.056282251 1.057344491 1.028291664 0.9976304 1.051573002 1.076274534 422314155 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.834139983 0.833630106 0.87166385 0.818748295 0.83358918 0.836894045 0.847210433 0.81281043 299527018 rd Dehalogenimonas lykanthroporepellens BL-DC-9 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidia;genus:Dehalogenimonas;species:Dehalogenimonas lykanthroporepellens; 1.192115078 1.230506026 1.201566243 1.208190454 1.178865974 1.198314971 1.183520325 1.17918404 1.206280283 1.214898076 1.192885095 1.209009438 1.166891523 1.176776697 1.125799965 1.17617196 1.209202619 1.216072767 296015223 linb Planctomyces limnophilus DSM 3776 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Planctomyces;species:Planctomyces limnophilus; 0.93482485 0.89880469 0.982769354 1.008785469 1.004815005 1.087456344 1.00437028 1.016046281 0.972647453 0.986747019 1.006965084 0.968898819 0.979344471 0.948991041 0.929824937 0.94241141 1.006074314 0.975043163 217503946 cysI Methylocella silvestris BL2 Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Methylocella;species:Methylocella silvestris; 1.141881592 1.136864478 1.158817155 1.101315848 1.152915805 1.169636243 1.141759581 1.130968126 1.123109435 1.138385511 1.127090339 1.128915627 1.136477725 1.156457507 1.108553217 1.133618195 1.142864935 1.135732183 56686446 Sir Synechococcus elongatus PCC 6301 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus;species:Synechococcus elongatus; 1.162603816 1.096099365 1.187287628 1.158278453 1.105747325 1.132415315 1.11105044 1.123414587 1.140490278 1.113486672 1.076915685 1.133235155 1.07803585 1.094431069 1.023684631 1.068517994 1.157842135 1.133597984 255106359 nhh Thalassiobium sp. R2A62 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Thalassobium; 1.059757694 1.045906424 1.058389161 0.970472146 0.999227326 0.977662015 0.994450466 0.920640726 1.052789106 0.989788721 1.027439288 0.980520175 0.989921022 0.944363052 0.932301659 0.903336992 1.052895214 1.019465018 34498812 ppk Chromobacterium violaceum ATCC 12472 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Chromobacterium;species:Chromobacterium violaceum; 0.804485621 0.855842095 0.76990159 0.836688419 0.814726801 0.821487657 0.833091356 0.817846706 0.823823864 90426241 pgk Rhodopseudomonas palustris BisB18 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 1.311726349 1.295563154 1.272334328 1.299329218 1.258118082 1.295319844 1.260517796 1.268947798 1.264293697 1.253575689 1.258601355 1.264915858 1.227766271 1.231207636 1.220744266 1.217600661 1.297243946 1.262804618 374846110 bphd Nocardia cyriacigeorgica GUH-2 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia cyriacigeorgica; 1.068124004 1.013980422 0.944616228 0.973478381 0.908795742 0.964392809 0.902761732 0.940271117 0.94856586 1.0143249 0.924555634 0.951910464 0.918473138 0.972174015 0.892224098 0.935887008 0.964042675 0.984281598 259502115 badh Lactobacillus antri DSM 16041 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus antri; 1.047716936 1.090549777 1.05009558 1.111817738 1.105487916 1.076474566 1.043673577 1.008898966 1.094592041 1.104865956 1.093534577 1.105951969 1.077692425 0.982662411 1.033681746 1.049941214 1.061896076 1.05604925 338168420 xylg Cupriavidus necator N-1 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 1.092172044 1.113591875 1.109143253 1.09479591 1.113208924 1.116637958 1.087289796 1.074167522 1.073602715 1.079688394 1.085570085 1.101482434 1.098263238 1.061666405 1.061697185 1.10766802 1.115411701 1.101807969 116633906 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.800615129 0.855453876 0.840809757 0.890200707 0.858761961 0.846516172 0.840080315 0.913814104 0.906176315 0.870713942 0.858980479 0.886790292 0.804107773 0.841322984 0.840685747 0.911842613 0.915767246 383770055 nitrilase Bradyrhizobium sp. S23321 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.888264409 0.954172971 0.859489612 0.870635998 0.89948044 0.905886122 0.913650517 0.85665616 0.898148587 0.896071013 0.999326602 0.854966316 0.849551566 0.86196019 0.886363247 0.904768273 119373576 GAPDH_Calvin Paracoccus denitrificans PD1222 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 1.169576712 1.164745324 1.108551487 1.142316038 1.10370457 1.134302709 1.087775284 1.09337264 1.134533005 1.115169103 1.089716715 1.123174307 1.0734505 1.075524535 1.056080063 1.095177032 1.152634669 1.154175867 254488753 nirb Roseobacter sp. GAI101 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 1.08733021 1.113099537 1.099067162 1.110051627 1.170666571 1.155776115 1.082487464 1.072445818 1.10120898 1.123897614 1.111807925 1.13202411 1.130927468 1.137057956 1.079533292 1.18912199 1.125887636 1.121598121 32472610 alginase Rhodopirellula baltica SH 1 Carbon Cycling Carbon degradation Alginate superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Rhodopirellula;species:Rhodopirellula baltica; 0.964002835 0.982671454 0.957962556 1.051085247 0.981179117 1.021552028 0.994743664 1.005750157 0.988329338 1.002834618 0.980512745 0.99188816 0.957974967 0.980043594 0.988870025 0.951698236 1.017249855 0.994052638 339514543 amyA Salmonella bongori NCTC 12419 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella bongori; 0.872861665 0.902219714 0.877665895 0.894913007 0.861122065 0.942399213 0.86773058 0.896644809 0.894461798 0.935589276 0.876912252 0.917817806 0.878536914 0.912472088 0.874654395 0.872902575 0.933322561 0.952001132 225903832 amoa uncultured crenarchaeote Nitrogen Nitrification NA superkingdom:Archaea;phylum:Crenarchaeota; 0.930650372 0.871121667 1.009889882 0.957686892 0.863080375 0.926235543 0.86801063 0.872943275 0.907442485 0.990245281 0.899682894 0.886017049 0.873920774 0.86664976 0.831813067 0.872262904 0.912887552 0.874005195 294678706 fthfs Rhodobacter capsulatus SB 1003 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter capsulatus; 0.893784038 0.872883033 0.845518113 0.910074856 0.89819612 0.839093865 0.90819786 0.834133433 0.860664019 0.86601296 0.846416953 0.943572265 0.814896033 0.892149276 0.887257193 4220431 phdci Ralstonia sp. U2 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 0.97747782 0.981498857 0.97377227 1.011057156 0.99719188 0.995461697 0.976367861 0.985667898 0.971030264 0.982892784 1.053466061 0.974143901 0.949134119 0.981438426 0.944285629 0.969982703 0.998972386 0.980076336 152967017 amyA Kineococcus radiotolerans SRS30216 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Kineosporiaceae;genus:Kineococcus;species:Kineococcus radiotolerans; 0.901506035 0.962150764 0.919355246 0.897807495 0.911108946 0.941068773 0.886081483 0.859847668 0.898894416 0.902396247 0.878732042 0.846002462 0.902467308 0.90610756 0.859369727 0.871780883 0.932775201 0.961356094 359779301 cellobiase Arthrobacter globiformis NBRC 12137 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter globiformis; 0.914979556 0.855966673 0.789821004 0.871978337 383331683 ppx Mycobacterium xenopi RIVM700367 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium xenopi; 0.833923479 0.817722121 0.840535096 0.841213992 0.851629029 0.814983575 0.848789926 260608734 pgk Vibrio coralliilyticus ATCC BAA-450 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio coralliilyticus; 0.804869402 0.857105858 0.86910306 0.837657208 0.784532717 0.827612428 0.826885656 0.867120625 0.821657584 0.833645524 0.854404916 296254450 tktA Methylosinus trichosporium OB3b Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylocystaceae;genus:Methylosinus;species:Methylosinus trichosporium; 0.90219614 0.980572137 0.867577124 0.880594326 0.831429197 0.848538061 0.820939555 0.861489671 0.806047199 0.809452852 0.874967475 0.823028515 0.884773573 0.890542268 56798867 catechol_b uncultured bacterium Organic Remediation Aromatics Other aromatics superkingdom:Bacteria; 0.845248671 0.861943805 0.813686239 0.8320249 0.814464125 0.875575858 0.854075099 386846665 mdla Actinoplanes sp. SE50/110 Organic Remediation Aromatics Aromatic alpha hydroxy acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes; 1.453483628 1.418124431 1.401362293 1.414329294 1.396911615 1.402723938 1.386181404 1.407580071 1.414788589 1.41274511 1.408094378 1.423899965 1.330140384 1.341574395 1.348106429 1.367767062 1.406501446 1.353402644 302480917 amyA Atopobium vaginae PB189-T1-4 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Atopobium;species:Atopobium vaginae; 0.894173209 0.847563947 0.856573651 0.869956285 0.810937659 0.812335944 0.846408066 0.839595087 0.84266251 0.875745329 0.878510503 0.84402486 0.875404405 0.887445847 296926994 cellobiase Starkeya novella DSM 506 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Starkeya;species:Starkeya novella; 0.766248793 0.772700864 0.792086458 0.797724574 167070744 ara Rhizobium leguminosarum bv. trifolii WSM1325 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 1.05606514 1.055490651 1.141172316 1.085255116 1.009294135 1.080887965 1.005879061 1.028649223 1.057008296 1.065193817 1.044966148 1.015580328 1.028911737 1.052200005 0.992921416 1.020100697 1.075888447 1.068505656 336025618 arsc Mesorhizobium opportunistum WSM2075 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium opportunistum; 0.99941225 0.97121285 0.990725208 0.939377681 0.971412694 0.952494032 0.966038129 0.928875535 0.933422979 0.901550513 0.970820758 0.923182171 0.911095367 0.933877713 0.976335961 0.944015277 0.938201441 300075672 b_lactamase Herbaspirillum seropedicae SmR1 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herbaspirillum;species:Herbaspirillum seropedicae; 0.877644453 0.872589075 0.830834819 0.88569287 0.871191782 0.897783727 0.820568381 0.896346006 0.887054687 0.890595333 218356377 catb Escherichia fergusonii ATCC 35469 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia fergusonii; 1.144401563 1.127451157 1.039368218 1.128342225 1.058633162 1.122881871 1.082296601 1.10460203 1.12839711 1.095304061 1.020802291 1.088140905 1.017115643 1.032059497 1.036780777 1.070065992 1.130316531 1.14103966 311896279 acetylglucosaminidase Kitasatospora setae KM-6054 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Kitasatospora;species:Kitasatospora setae; 0.978527803 0.974383644 0.979740628 0.984967098 0.978797918 0.954191619 0.975166307 0.95608048 1.008438134 1.000085279 0.984173965 1.003276542 0.935173994 0.970898984 0.960608445 0.97256788 0.944236983 0.996163659 354818419 amyA Olsenella sp. oral taxon 809 str. F0356 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Olsenella;species:Olsenella sp. oral taxon 809; 1.471582997 1.427439592 1.435058128 1.45820714 1.407569742 1.434657033 1.425168095 1.443556647 1.431180029 1.424330019 1.421188381 1.445852808 1.42671323 1.364415528 1.424878499 1.41380056 1.448155961 1.409800066 27377280 tktA Bradyrhizobium japonicum USDA 110 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium diazoefficiens; 1.262972419 1.253291332 1.215250192 1.254244772 1.22979266 1.254592979 1.221277429 1.228849247 1.222306191 1.212445481 1.232177098 1.246059329 1.209505141 1.191557517 1.202798194 1.222210905 1.259942894 1.231340913 23305803 phenol_oxidase Phaeosphaeria halima Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Phaeosphaeriaceae;genus:Phaeosphaeria; 1.10080663 1.131336054 1.097663187 1.090403622 1.064720514 1.121405747 1.074430585 1.07350326 1.111361606 1.130247966 1.092755437 1.102201351 1.066141807 1.099950816 1.051548959 1.0726788 1.068621495 1.091486438 326693579 ppx Leuconostoc argentinum KCTC 3773 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Leuconostocaceae;genus:Leuconostoc;species:Leuconostoc lactis; 0.891712101 0.826933431 0.810465544 0.872944444 0.849256088 0.812418073 0.873429324 0.913108125 0.848014464 0.840624175 387130685 arsc Methylophaga sp. JAM7 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Methylophaga; 0.9962119 1.070464585 1.045497444 1.046902524 1.035064614 1.050641301 1.028125059 1.046182648 1.029253597 1.036321051 1.078068135 1.043539863 1.053742574 1.052286448 1.054142372 1.041136728 1.053394832 1.043387787 156743839 amyA Roseiflexus castenholzii DSM 13941 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus;species:Roseiflexus castenholzii; 0.975246102 0.909547315 0.987867991 0.909811398 0.83884892 0.861302325 0.946189382 0.916280389 0.925166925 0.900124397 0.892988029 0.844591508 0.970834522 0.938154933 315313144 amyA Actinomyces sp. oral taxon 180 str. F0310 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 180; 1.49586934 1.459411671 1.472991758 1.503926479 1.491751048 1.494939391 1.491467122 1.463721982 1.46842173 1.447181776 1.481766045 1.495661364 1.462876855 1.441931497 1.466798123 1.465646642 1.475331864 1.435231918 156446963 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.9391875 0.869533471 0.944890508 0.914845359 1.006158735 0.95973138 0.960649222 0.954496503 0.946727799 0.992439292 0.982494148 0.902469489 0.99436153 0.883241667 0.836822159 0.921034847 0.889837315 0.934127662 326316653 endoglucanase Acidovorax avenae subsp. avenae ATCC 19860 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax avenae; 0.792907497 0.836112474 0.820396107 0.792730915 0.810149613 0.795009903 0.798147677 0.816324789 219675394 SoxC gamma proteobacterium NOR5-3 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 0.917204918 0.974785022 0.932617289 0.967916306 0.942319084 0.968297442 0.912947732 0.923823347 0.955755314 0.912666682 0.901014731 0.93060745 0.918083504 0.894421045 0.91778563 0.926383432 0.974911791 0.93121511 62120271 alkb Mycobacterium ratisbonense Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 1.029941696 1.119187368 0.977964254 0.987355409 1.01166166 1.067990507 0.984014987 1.00158472 0.990863479 1.01561628 1.048145457 1.031546063 0.985183702 0.984520719 0.986596853 0.997041297 1.027901122 1.034769109 295695614 bphF1 Kyrpidia tusciae DSM 2912 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Kyrpidia;species:Kyrpidia tusciae; 1.09108785 1.075329751 1.063533184 1.057389184 1.057006813 1.104707518 1.045709421 1.010921745 1.065668955 1.130605772 1.139755684 1.091545616 1.036089739 1.092792735 0.998169762 1.044887812 1.052603078 1.060052402 228766198 amyA Bacillus pseudomycoides DSM 12442 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus pseudomycoides; 0.847567493 0.869836009 0.854172952 0.875145215 0.898994042 0.858353091 0.83057184 0.851137142 0.890293555 0.872555172 0.891641701 0.879502527 0.888265449 0.847305757 0.862609105 0.851042696 118589811 cysI Stappia aggregata IAM 12614 Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 0.888152009 0.897044217 0.837889161 0.930772467 0.8648209 0.862280776 0.8395255 0.849475785 0.883514519 0.842863202 0.84484779 0.885134942 0.857212578 0.908316566 0.883812838 116671523 cellobiase Arthrobacter sp. FB24 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 1.251285287 1.261109379 1.241830431 1.225331307 1.227960508 1.202397723 1.199694548 1.228127567 1.218429628 1.249532909 1.211947704 1.23058764 1.21217284 1.196120705 1.150650318 1.202671123 1.223418443 1.247210798 319743757 FBPase Lautropia mirabilis ATCC 51599 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Lautropia;species:Lautropia mirabilis; 1.082749965 1.078479315 1.079342459 1.088720991 1.071292943 1.071576275 1.056226244 1.044278467 1.057167355 1.126964612 1.097751777 1.100025599 1.101619919 1.087949087 1.095158738 1.076023941 1.077835831 1.078629323 388530978 B_lactamase_A Tistrella mobilis KA081020-065 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Tistrella;species:Tistrella mobilis; 0.798961409 0.797974808 116608920 urec Arthrobacter sp. FB24 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 1.193444171 1.192414344 1.170325491 1.170044999 1.191954886 1.21128635 1.166556 1.154387847 1.159584649 1.178451896 1.179608802 1.168965753 1.192422113 1.154430388 1.158759646 1.157893469 1.227363181 1.173869074 28852743 nasa Pseudomonas syringae pv. tomato str. DC3000 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 1.053112438 1.03116994 1.054916808 1.044590505 1.044601421 1.055226232 1.037905315 1.023161463 1.008227464 1.044447689 1.042103658 1.026760552 1.00746839 1.002322708 0.987665729 1.013737835 1.048524314 1.038396061 152610 nifh Rhodospirillum rubrum Nitrogen Nitrogen fixation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum; 0.797763155 0.78214952 0.843278631 0.783808526 0.814435049 0.817013553 317047027 trze Pantoea sp. At-9b Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 0.817480733 0.826625164 0.798319104 0.850240417 0.797915754 0.82019721 0.867335231 0.851000592 90198726 alkb Mycobacterium vanbaalenii PYR-1 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 1.227761329 1.212990973 1.194262297 1.212591328 1.186114812 1.214613167 1.171538439 1.192562002 1.209544805 1.185013013 1.17888265 1.213262617 1.174972129 1.156130772 1.155871783 1.165539106 1.200207797 1.213173442 209874119 aln Oligotropha carboxidovorans OM5 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Oligotropha;species:Oligotropha carboxidovorans; 0.810799113 0.854129163 0.841726108 0.810021888 0.874031365 0.834275096 0.853465748 0.872131059 46519937 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.935138819 0.980048939 0.942650071 0.946624799 0.871028584 0.88585837 0.888508836 0.895281188 0.918935233 0.907054118 0.870621876 0.883000859 0.850951065 0.862092726 0.888738933 0.861297562 0.952742321 0.942833533 302404391 oxdb Verticillium albo-atrum VaMs.102 Organic Remediation Aromatics Nitoaromatics superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticillium;species:Verticillium alfalfae; 0.989775278 0.984991958 0.984936848 1.123568026 0.995808943 0.944855461 1.131044454 1.250052436 0.982936999 0.984817451 1.109442424 1.131112076 0.904846091 0.887262293 0.876796587 1.025279391 1.00125039 0.958797984 147677923 amyA Pelotomaculum thermopropionicum SI Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Pelotomaculum;species:Pelotomaculum thermopropionicum; 0.804230656 0.817820921 0.82115297 0.831496424 0.838487644 0.830960929 0.838289786 0.828700906 0.80381332 0.861645955 0.836268593 0.858608596 0.867687156 283481860 mcra uncultured methanogenic archaeon Carbon Cycling Methane Methanogenesis superkingdom:Archaea;phylum:Euryarchaeota; 1.08848805 1.101205388 1.058823028 1.066717573 1.058783125 1.014431138 1.054817716 1.060944964 1.098197818 1.058781294 1.0573536 1.059132759 1.015860905 0.994680288 0.986395633 0.986094044 1.03301861 1.04555857 313005761 cysJ Neisseria lactamica 020-06 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria lactamica; 0.882535839 0.824417186 0.843849914 0.835006654 0.848138358 0.795638115 0.829327309 0.86646718 0.865806757 326330654 chitinase Nocardioidaceae bacterium Broad-1 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae; 1.162112617 1.154076802 1.189516798 1.150906517 1.148989817 1.192569861 1.125390067 1.135429045 1.173500308 1.188644315 1.186045848 1.183180596 1.109671492 1.144716494 1.137193507 1.135503362 1.186667831 1.154345979 84780235 ppx Sodalis glossinidius str. 'morsitans' Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Sodalis;species:Sodalis glossinidius; 0.96363358 0.940208684 0.941616676 0.977753071 0.910234662 0.913670995 0.908214995 0.94015187 0.954865942 0.947051071 0.904806444 0.947870037 0.836615444 0.92842109 0.943462955 0.894368146 0.935461542 0.910943497 251844443 terc Paenibacillus sp. oral taxon 786 str. D14 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus sp. oral taxon 786; 0.975100182 0.909591635 0.991045161 0.994723042 0.96770327 0.975934767 0.94455655 1.003770843 0.984558973 0.937198538 0.992003355 1.007778815 0.915329891 0.940986246 0.883859093 0.911853789 0.981423516 0.980512926 301114825 hsp90_Stramenopiles Phytophthora infestans T30-4 Other Phylogenetic NA superkingdom:Eukaryota;order:Peronosporales;genus:Phytophthora;species:Phytophthora infestans; 0.953512802 0.961110334 0.91251567 0.929309406 0.946669062 0.972619855 0.917767194 0.884774666 0.902513767 0.939458987 0.939596812 0.942392889 0.929375704 0.882543781 0.864020589 0.908379719 0.948235125 0.96275931 162284183 amyA Hoeflea phototrophica DFL-43 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Hoeflea;species:Hoeflea phototrophica; 1.111376199 1.118292861 1.122854228 1.150841432 1.120372627 1.119006303 1.094215812 1.081358489 1.114987017 1.114839121 1.118401726 1.129317527 1.125979723 1.081328886 1.068152111 1.105872883 1.147217953 1.102864795 410944353 nfsa_2 Gluconobacter frateurii NBRC 101659 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconobacter;species:Gluconobacter frateurii; 1.081048113 1.021342757 0.958583864 1.030807932 1.037346341 1.095295881 1.00080999 0.995015298 1.022384797 1.014545822 1.054054779 1.03335642 0.964318878 1.015323533 0.906613465 0.984170507 1.017966282 1.015165656 294012888 ppx Sphingobium japonicum UT26S Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium;species:Sphingobium japonicum; 0.893660618 0.892522362 0.92261986 0.91812577 0.956581723 0.95887299 0.878893096 0.936051798 0.899122704 0.902648948 0.889761231 0.908591235 0.819264009 0.814732611 0.876036167 0.895618773 15888482 ppx Agrobacterium tumefaciens str. C58 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 1.141189938 1.141467567 1.126569256 1.104350552 1.119201591 1.139048335 1.103371183 1.091637784 1.112258321 1.138318971 1.127636559 1.119851848 1.117156072 1.111950889 1.073689654 1.091126201 1.131367999 1.114864852 294628995 amyA Streptomyces sp. e14 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 0.832036127 0.829729048 0.889916956 0.940005286 0.901929887 0.861402191 0.948316634 1.001437287 0.846137649 0.911088445 0.971079739 0.966910838 0.856506347 0.791908693 0.795432554 0.804525357 0.881950358 0.922195294 395809982 B_lactamase_A Pseudomonas stutzeri DSM 10701 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 0.861232107 0.866755511 0.847537916 0.957749039 0.8145908 0.895065944 0.81088802 0.828358939 0.868809078 0.841162302 0.890295013 0.826054671 0.846335617 0.887418875 338782222 dehh Achromobacter xylosoxidans AXX-A Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter;species:Achromobacter xylosoxidans; 1.03045306 0.991320787 1.111970324 0.949742246 1.014988859 1.050400268 0.965624756 1.010364219 0.968945496 1.005196836 1.081038094 1.034092111 0.956852071 0.913510746 0.926576785 0.887071716 0.97237632 0.978342069 7672267 hbh Streptomyces coelicolor A3(2) Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 1.146026048 1.13281361 1.097237911 1.128073892 1.087717555 1.197473795 1.096772274 1.161410497 1.11802573 1.137106056 1.112100041 1.121362562 1.068021992 1.136945054 1.067275758 1.092476859 1.156416394 1.157229992 32480579 gdh Porphyra yezoensis Nitrogen Ammonification NA superkingdom:Eukaryota;class:Bangiophyceae;order:Bangiales;family:Bangiaceae;genus:Pyropia; 1.043569982 1.087518754 1.064600211 1.101557666 1.085172058 1.106390666 1.045606588 1.072936755 1.094466188 1.072881034 1.114667635 1.131046361 1.02489273 1.036669292 1.011013825 1.057736022 1.082328312 1.074290315 407645679 poba Nocardia brasiliensis ATCC 700358 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia brasiliensis; 1.084537196 1.012441123 1.056284768 1.022492754 1.060714744 1.064731423 1.087059721 1.081742901 1.066554707 1.028706006 1.075418607 1.042919776 1.02436358 0.993582348 0.938841467 0.948455966 1.029424158 1.016468542 29832204 nirb Streptomyces avermitilis MA-4680 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 1.341300011 1.282818645 1.269480962 1.251692649 1.220871412 1.284053005 1.223744812 1.267490289 1.238603553 1.251692747 1.248237148 1.270175006 1.232330537 1.258613499 1.213685033 1.254560929 1.262744606 1.272885 157321962 badh Serratia proteamaculans 568 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia proteamaculans; 0.862699295 0.810540365 0.798755804 0.811214078 0.871488131 212527864 cellobiase Penicillium marneffei ATCC 18224 Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 1.248199858 1.215608175 1.225919207 1.231822587 1.175757339 1.231377581 1.177120304 1.212958212 1.229619036 1.210504812 1.192444641 1.230401101 1.165096751 1.191310423 1.15725785 1.194751535 1.220398048 1.218297532 144578837 terc Ostreococcus lucimarinus CCE9901 Metal Homeostasis Tellurium Detoxification NA 1.114982017 1.083137696 1.083984141 1.080352615 1.103667571 1.123474468 1.104750393 1.132095268 1.095901761 1.098741905 1.083398401 1.090150997 1.099535367 1.063667291 1.080525794 1.062561602 1.108210596 1.093394456 332298316 cda Treponema brennaborense DSM 12168 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema brennaborense; 1.009426373 0.961346409 0.95442743 0.985027122 0.998022842 0.981100529 0.845300604 0.990769306 0.944579226 0.980078412 0.908729635 0.920341561 0.920101556 0.942323453 0.901515635 0.911874192 0.984958301 1.002337616 162455881 cysI Sorangium cellulosum 'So ce 56' Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 0.868172614 0.870962655 0.827303377 0.907119713 0.853105157 0.838304072 0.882210935 0.860753741 0.880786545 0.920883684 0.839637591 0.925708537 0.824907717 0.891158216 0.812253442 0.890485196 0.886084192 323472939 rubisco uncultured bacterium Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria; 0.807814879 0.802249095 0.808556441 0.812715743 0.815614015 0.838045469 0.8102619 0.826036003 0.837518902 0.836113188 320334486 xylj Deinococcus maricopensis DSM 21211 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus maricopensis; 0.850100923 0.859696429 0.846006976 0.852371917 0.83007673 0.868419771 0.864164805 0.844718286 0.824468718 0.847049595 0.852610918 0.876837918 0.88960766 302683046 phospholipase_D_fungi Schizophyllum commune H4-8 Carbon Cycling Carbon degradation Phospholipids superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 1.16918033 1.131894966 1.128694796 1.175269005 1.139765663 1.145852536 1.123150194 1.129018977 1.153417765 1.152119365 1.129400469 1.149972718 1.107557592 1.087991008 1.059798928 1.118023478 1.156206874 1.126666796 46115498 endochitinase Gibberella zeae PH-1 Carbon Cycling Carbon degradation Chitin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Gibberella;species:Gibberella zeae; 0.918625838 0.984119226 0.934159017 0.896470255 0.910809746 0.9293526 0.876083842 0.910176507 0.833607946 0.927747633 0.971684732 0.906070327 0.864156076 0.930132932 0.871690623 0.901804736 0.909386409 0.962157872 38427028 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.076651852 1.019059329 1.033229619 1.03257561 0.965699239 0.969035642 0.938222626 0.961556784 1.036077395 0.99927342 1.039829099 0.983818461 0.999342552 0.998026458 0.967630195 0.98120606 1.058555888 1.034836308 365879794 exaa(moxf) Bradyrhizobium sp. ORS 375 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 1.09492139 0.990287107 0.943434916 0.891057728 0.963517038 0.946582538 0.908208565 0.99984346 1.004610154 0.96754169 1.056105884 1.123771211 0.986971515 0.996160799 0.980066218 1.017363637 1.00706682 0.998275111 397884953 arylest Pseudomonas fluorescens Q2-87 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 0.878792088 0.885413068 0.889673672 0.822011444 0.851900535 0.819681803 0.83884391 0.866821626 0.888458113 0.811337724 0.833048525 0.838230876 0.825354566 0.825297083 0.883372928 0.919938271 27382949 poba Bradyrhizobium japonicum USDA 110 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 0.979810733 1.029570768 0.94029305 0.950586482 0.907887165 0.935922018 0.885398578 0.887168554 0.939872415 0.988153467 0.963428254 0.94169756 0.883815293 0.915935895 0.870312807 0.863885439 0.971563588 0.963899094 223985544 cellobiase Holdemania filiformis DSM 12042 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Firmicutes;class:Erysipelotrichia;order:Erysipelotrichales;family:Erysipelotrichaceae;genus:Holdemania;species:Holdemania filiformis; 0.757888604 0.822375295 157145830 dmsa Citrobacter koseri ATCC BAA-895 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter koseri; 1.529806957 1.487585503 1.468139134 1.474913218 1.459264532 1.518042292 1.456352224 1.47262428 1.452408435 1.456027393 1.454028791 1.46399007 1.438870487 1.444745864 1.443689428 1.465094091 1.48453298 1.45587916 383936768 phytase Rheinheimera nanhaiensis E407-8 Phosphorus Phytic acid hydrolysis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Rheinheimera;species:Rheinheimera nanhaiensis; 1.256427495 1.204449691 1.198941968 1.202387154 1.169333195 1.20572491 1.145762038 1.188928588 1.226191801 1.189423765 1.171146095 1.21144993 1.153590759 1.148077526 1.135536411 1.146747797 1.210335151 1.184620691 116633918 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.015883266 1.031062171 0.966957742 1.000262593 0.921850343 1.024252094 0.913450031 0.943595057 1.012895915 1.004884801 0.981653603 0.959030632 0.918509425 0.973007366 0.915400573 0.942577319 1.031960713 1.05161227 342316484 aoxb uncultured bacterium Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 1.02304411 0.997232904 0.994295487 1.053127642 0.949698276 0.978859441 0.95762475 0.97977961 1.020417246 0.991110866 0.988229989 0.99167112 0.958216926 0.973428419 0.952772351 0.951656525 1.042175232 1.013032233 121530929 catechol Ralstonia pickettii 12J Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 1.173627466 1.133551976 1.096201672 1.11983341 1.098120508 1.114523515 1.093045061 1.147415106 1.130968511 1.098812014 1.120183343 1.142001929 1.082492659 1.0338702 1.061306687 1.089060702 1.135564665 1.119393185 337768685 amyA Streptomyces cattleya NRRL 8057 = DSM 46488 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces cattleya; 1.17131031 1.186105474 1.165784048 1.181570315 1.155071945 1.194180579 1.159276469 1.110018564 1.161293149 1.123283205 1.143190554 1.142973787 1.087853849 1.119370063 1.107262249 1.111820476 1.179027529 1.194946037 300390388 fthfs uncultured bacterium Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria; 0.788538107 0.823101785 0.815213386 0.806769153 28542643 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.958386535 0.945711478 0.934146968 0.940031082 0.940566448 0.946357418 0.84014628 0.876638572 0.940159195 0.886593897 0.809175652 0.868378672 0.882423642 0.839294526 0.870265765 0.921103865 0.991366835 187929295 TIM Ralstonia pickettii 12J Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 0.916546388 0.880558975 0.91396921 0.940825432 0.893396157 0.877250107 0.924439931 0.909067627 0.906027423 0.929188984 0.911126399 0.929177485 0.869550683 0.82281575 0.834538542 0.816694002 0.935819272 0.958352579 71368759 xyla Nocardioides sp. JS614 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 1.180637313 1.179549531 1.150177934 1.15768713 1.154666724 1.18832262 1.121165777 1.132961775 1.08647147 1.12247538 1.11962028 1.113904093 1.14483691 1.120335453 1.130160886 1.108072639 1.167198947 1.152550353 307586209 amyA Burkholderia sp. CCGE1003 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 0.893614883 0.869762947 0.810913562 0.884937693 0.829149175 0.848847733 0.815360767 0.892532496 0.886961131 0.824733049 0.827915203 0.813338731 0.845552004 0.897134902 0.903898496 302918152 cellobiase Nectria haematococca mpVI 77-13-4 Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Nectria;species:Nectria haematococca; 1.000750562 1.038456228 0.975665921 1.023041542 0.979272382 1.026439021 0.948019371 0.968649799 0.98934625 0.977111817 0.966679156 0.999323555 0.966568175 0.95361719 0.936777103 0.966128087 1.040658476 1.019006479 319750453 ccmL Isosphaera pallida ATCC 43644 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Isosphaera;species:Isosphaera pallida; 1.211201963 1.23024954 1.17459728 1.19777044 1.166376031 1.22138946 1.16394718 1.200845846 1.194119568 1.185004383 1.164426397 1.180911159 1.145259108 1.181562955 1.101197225 1.163268143 1.169905729 1.166676847 334703320 fosa Aeromonas caviae Ae398 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas caviae; 0.804875614 0.842122358 156857767 aps_apra uncultured bacterium Sulfur adenylylsulfate reductase NA superkingdom:Bacteria; 1.140900174 1.098433994 1.136216849 1.146233527 1.097198922 1.095919983 1.100752551 1.125609333 1.143006931 1.088489019 1.10711178 1.119529088 1.083658209 1.056064557 1.035769833 1.059367848 1.110789317 1.103140059 29828649 RgaE Streptomyces avermitilis MA-4680 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 1.238315036 1.24329791 1.202849965 1.204575965 1.150587878 1.213134788 1.15363204 1.18765562 1.177396004 1.196773391 1.138972854 1.171980799 1.135476301 1.152207416 1.121996164 1.167942502 1.242564645 1.227653825 340617010 chitinase Zobellia galactanivorans Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Zobellia; 0.955506404 0.910391615 0.923411395 0.989924652 0.940033579 0.967131127 0.946665593 0.968741785 0.96109694 0.941954477 0.90112237 0.953339995 0.929420797 0.917171344 0.895791583 0.949103105 0.962162166 0.932982417 357200590 ara Paenibacillus terrae HPL-003 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus terrae; 0.855316091 0.804839978 371445095 dsrB uncultured Desulfobulbus sp. Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobulbaceae;genus:Desulfobulbus; 0.815814031 0.933012037 0.853149494 0.816571536 0.838662066 0.80731838 0.863410058 0.847845286 0.819300608 0.85322163 0.883930042 0.83814467 0.811325646 357212661 CsoS1_CcmK Desulfosporosinus orientis DSM 765 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfosporosinus;species:Desulfosporosinus orientis; 1.14139626 1.121368467 1.118605278 1.124059988 1.157692109 1.152281447 1.152510674 1.131917108 1.128886316 1.114071351 1.128395166 1.149234675 1.137934919 1.118022589 1.057477906 1.078089628 1.147064691 1.088252221 68343000 pcag Pseudomonas fluorescens Pf-5 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 1.301096732 1.255700092 1.260690667 1.294188907 1.275003365 1.28719062 1.300529093 1.300818737 1.277884495 1.246597999 1.271237749 1.30222877 1.251133352 1.212744548 1.259582752 1.249561262 1.296377944 1.22338337 87199889 vana Novosphingobium aromaticivorans DSM 12444 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium aromaticivorans; 1.049239397 1.121743975 1.065032739 1.08480168 1.075319475 1.115410524 1.048808828 1.05158712 1.037143408 1.109653412 1.055701666 1.092473416 1.060540587 1.068369724 1.06133226 1.09557882 1.057244041 1.110061082 302694511 axe Schizophyllum commune H4-8 Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 0.988699619 0.967736848 0.946742214 0.945653243 0.91297817 0.954796908 0.932888177 0.933686119 0.937746138 0.973809911 0.929563266 0.942602947 0.879617423 0.879975752 0.827931828 0.90214495 0.961874139 0.980867821 326210130 bphc Novosphingobium nitrogenifigens DSM 19370 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium nitrogenifigens; 1.003425499 1.041538415 0.968300433 1.070312695 0.980327877 0.980749257 0.976931309 0.973923628 0.988509832 0.943487851 0.963934044 1.026767421 0.979598776 0.93532416 0.95026623 0.989083349 1.034833463 0.989143974 283784218 amyA Citrobacter rodentium ICC168 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter rodentium; 0.955306697 0.839843819 0.993599003 0.905094089 0.854960845 0.812695741 0.878330305 0.856574284 0.865313732 0.877838531 0.900796081 0.954663319 0.890305165 87239944 bphd Nocardioides aromaticivorans Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 0.896177823 0.961879295 0.95531095 0.939335359 0.99585541 1.018396985 0.961541192 0.943123792 0.938270084 0.979911237 0.916374611 0.946328172 0.903492051 0.886420875 0.819697902 0.887409221 0.948579018 0.945688549 256359007 xylanase Catenulispora acidiphila DSM 44928 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 1.3668212 1.361773967 1.32237024 1.311658573 1.306979552 1.37513811 1.309472337 1.327124729 1.300758015 1.351909408 1.32583905 1.308775484 1.269392194 1.322002237 1.249274194 1.305828375 1.32931382 1.354055413 296283816 linb Citromicrobium bathyomarinum JL354 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Citromicrobium;species:Citromicrobium bathyomarinum; 0.907776024 0.924939667 0.895829091 0.978932672 0.906389656 0.958600893 0.930829482 0.949428931 0.953757597 0.914642523 0.916767412 0.944731098 0.900647988 0.887153736 0.877164603 0.902326814 0.964246841 0.943999025 326196965 cutinase Gordonia neofelifaecis NRRL B-59395 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia neofelifaecis; 0.969104608 1.008267909 0.991864972 0.986468698 0.907181682 0.975769513 0.949021628 0.970022177 0.970478581 0.985622335 0.918087793 0.949766227 0.929778286 0.950627087 0.914896769 0.949588337 0.982987778 0.989525713 347752947 chrr Bacillus coagulans 36D1 Metal Homeostasis Chromium Detoxification superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus coagulans; 1.046755679 1.055019669 1.025772419 1.050195965 1.056787662 1.090062335 1.083025289 1.076609686 1.037715336 1.094349558 1.094078718 1.061917987 1.06174932 1.107892139 1.062238941 1.060585426 1.037328154 1.030094465 218522407 exaa(moxf) Methylobacterium chloromethanicum CM4 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium extorquens; 1.055584126 1.025036234 1.033356066 1.070719245 1.022824589 1.056866187 1.036192827 1.033570011 1.044070598 1.057683229 1.051258679 1.043992937 1.024922993 1.005382534 0.982415303 1.035013603 1.071721156 1.049649106 108805216 glucoamylase Rubrobacter xylanophilus DSM 9941 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Rubrobacterales;family:Rubrobacteraceae;genus:Rubrobacter;species:Rubrobacter xylanophilus; 1.060563083 0.984637659 1.059720715 1.064265936 1.03139846 1.04073431 1.044800807 1.028575783 1.073228208 1.027401139 1.034337955 1.057235524 0.966777833 0.997240642 0.967052056 0.98011028 1.037582212 1.009808651 374312637 mdlc Granulicella mallensis MP5ACTX8 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Granulicella;species:Granulicella mallensis; 0.961026116 0.91317463 0.914160173 0.970175456 0.906278415 0.928412657 0.916861713 0.925243849 0.940056083 0.967534366 0.87022005 0.982099328 0.879925984 0.918703083 0.86153381 0.883666519 0.954086838 0.982770595 338756977 GAPDH_Calvin Roseobacter litoralis Och 149 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter litoralis; 0.782619704 0.947674067 302571941 amyA Micromonospora aurantiaca ATCC 27029 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Micromonospora;species:Micromonospora aurantiaca; 1.155017726 1.113571879 1.065736857 1.123745593 1.061839111 1.110792308 1.039357624 1.061640679 1.101987363 1.094244836 1.086229322 1.084125345 1.057676773 1.096284799 1.029870506 1.082216222 1.140073342 1.088704307 17428457 pcag Ralstonia solanacearum Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 1.198420053 1.166409236 1.156050636 1.155278588 1.159217214 1.207814729 1.170638027 1.153197893 1.155883187 1.201956034 1.15905469 1.173089002 1.130907473 1.166373475 1.118459106 1.156964158 1.167022978 1.189435783 396938747 atza Methanoculleus bourgensis MS2 Organic Remediation Herbicides related compound NA superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;family:Methanomicrobiaceae;genus:Methanoculleus;species:Methanoculleus bourgensis; 0.769294126 0.79998952 0.819632873 0.78015797 0.817625441 0.813340958 0.773484043 0.802305813 0.8484606 295105901 badh Gordonibacter pamelaeae 7-10-1-b Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Gordonibacter;species:Gordonibacter pamelaeae; 0.95917169 0.965384455 0.957586829 0.941308253 0.88366895 0.899297444 0.911154817 0.92099555 0.924397048 0.930407891 0.900504413 0.924043811 0.911461849 0.924859768 0.902435224 0.884169557 0.945908971 0.95008706 83950170 nbac Roseovarius nubinhibens ISM Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius;species:Roseovarius nubinhibens; 0.981183033 0.97427766 0.976660831 0.964743792 0.995267282 1.014395708 0.996142498 1.016388218 1.002153324 0.986394807 0.941588967 0.941313915 0.950383998 0.9252086 0.875599796 0.92534299 0.998410659 1.03321658 226243303 xylg Rhodococcus opacus B4 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus opacus; 1.206324391 1.19893765 1.181944427 1.192842916 1.170208506 1.224681881 1.170392321 1.171485165 1.176005361 1.166391914 1.177299148 1.152883597 1.144168924 1.145299025 1.1148401 1.145879834 1.208489881 1.186788714 315049649 linc Arthroderma gypseum CBS 118893 Organic Remediation Pesticides related compound NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Arthrodermataceae;genus:Arthroderma;species:Arthroderma gypseum; 0.823442874 0.909332247 0.829690122 0.832401125 0.823970159 0.817688055 0.811079358 0.801298621 0.812795954 0.831667913 0.852167694 379257204 pcpe Saccharomonospora azurea NA-128 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora azurea; 1.299878045 1.305063505 1.229780932 1.172412306 1.202552215 1.222903294 1.172787418 1.194416397 1.197106486 1.207717401 1.248703174 1.194114861 1.144465848 1.201050948 1.1947824 1.217399891 1.198253843 1.220646954 353182301 cutinase Mycobacterium rhodesiae JS60 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 1.146844278 1.104697871 1.121157054 1.140727475 1.106696699 1.127768398 1.099349891 1.119996609 1.117439684 1.153526308 1.106416526 1.13941319 1.080892209 1.079799953 1.110731347 1.099677985 1.15997028 1.141887316 317057991 mer Collimonas sp. MPS11E8 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Collimonas; 1.025029128 1.002848464 1.035837363 1.042759544 1.023355076 1.013483589 1.035513051 1.032653099 1.04149156 0.95175817 1.032051916 1.015039135 0.977818243 0.914295492 0.946001339 0.961250726 1.047420946 0.968076756 378551376 dmdA Citricoccus sp. CH26A Sulfur DMSP degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Citricoccus; 1.13542637 1.129364186 1.088377211 1.155868881 1.086778503 1.122206685 1.112486273 1.14177077 1.12326609 1.096769503 1.067375784 1.136137843 1.066618653 1.065253504 1.051097859 1.077873475 1.135164791 1.104422381 33391357 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.961549315 0.942654948 0.930237933 0.918371219 0.878552473 0.93198785 0.913775636 0.968624431 0.946206243 0.947684099 0.865005565 0.88287058 0.869033378 0.933086024 0.840965186 0.886801645 0.893541942 0.963648139 90336696 phdk Aurantimonas manganoxydans SI85-9A1 Organic Remediation Polycyclic aromatics NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Aurantimonas;species:Aurantimonas manganoxydans; 0.771804685 0.79101679 0.853811646 0.820424667 0.832487471 0.874491429 157679455 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.046988284 1.036173089 1.044093488 1.068396343 0.969149532 1.055950449 1.067826111 1.026156356 1.025460953 1.00840452 1.024023833 1.012387724 1.012378746 1.009037999 0.969112361 1.0162341 1.038240321 1.048647696 356639591 one_ring_23diox Pseudomonas sp. KA-08 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 1.576423512 1.509593571 1.526989258 1.540734742 1.504049355 1.503391985 1.48496147 1.508665424 1.545644557 1.496728772 1.505186125 1.514980476 1.470190074 1.42384563 1.534356004 1.467146746 1.532073659 1.480698203 226717907 amyA Azotobacter vinelandii DJ Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Azotobacter;species:Azotobacter vinelandii; 1.117458516 1.152893315 1.063894136 1.091138321 1.082446892 1.113324215 1.029754109 1.029688218 1.103207904 1.106519984 1.091837493 1.106220851 1.08028804 1.068250301 1.035072056 1.096507263 1.094398105 1.123247824 40253025 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.827602785 0.821089578 0.81954223 0.809553801 50542688 rubisco uncultured bacterium Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria; 0.810532676 0.850244064 0.887511533 0.876174025 0.832817974 0.831297573 0.820950354 0.806276513 0.809064985 0.871500879 0.83173462 0.846146441 0.826323785 0.882248323 0.840618777 0.872237604 0.884722033 112463327 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.918690497 0.898043958 1.031955328 0.94241619 0.962298632 0.962090696 0.9484029 0.949582077 1.013450791 0.940715106 0.94187074 0.937793267 0.924201042 0.953354262 0.959025603 0.932271069 0.994361392 0.983626894 91799194 cysJ Nitrobacter hamburgensis X14 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter hamburgensis; 1.119005987 1.114573732 1.045876089 1.035885343 1.003810577 1.07031516 1.022958137 1.015631632 1.010820884 1.057780422 1.089315851 1.030914525 1.036669716 1.013997568 1.027426071 1.04468883 1.029583715 1.07332754 164455376 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 1.059204247 1.04723188 1.004662738 0.990320015 1.031573105 0.979576193 0.975019308 0.978641502 0.999726129 1.011986108 1.016520277 0.987287296 0.999801304 0.980032459 0.946427 0.972518472 1.024790616 1.068217767 225159110 RgaE Opitutaceae bacterium TAV2 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Diplosphaera;species:Diplosphaera colitermitum; 0.950597196 0.989688627 0.962548496 0.943541126 0.882809908 0.948778855 0.917262439 0.926665229 0.954110303 0.941932517 0.925384646 0.976340822 0.922943953 0.897759178 0.886445699 0.9085668 0.992541834 0.931520261 336103014 mannanase Cellvibrio] gilvus ATCC 13127 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas;species:[Cellvibrio] gilvus; 0.984854671 1.060178348 1.018412157 0.99998606 1.01310863 1.029011002 0.975289404 0.955133329 0.994159507 1.023001657 1.022825848 1.014257679 0.98571501 1.048919443 0.946307271 0.981131571 1.005297381 1.04605089 90107179 amyA Rhodopseudomonas palustris BisB18 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 0.874066504 0.858544307 0.8395136 0.861420683 0.889650867 0.8545785 0.8769334 0.899822574 0.862185608 0.883046306 0.874556796 0.872141866 0.88697161 0.808221876 0.847530932 0.805691809 0.85069876 0.923490298 219664370 bphb Rhodococcus sp. TFB Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 0.81206177 0.80200283 0.816592056 0.814818371 0.831573516 255020189 FBPase Acidithiobacillus caldus ATCC 51756 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus caldus; 0.943018778 0.889222822 0.939238448 0.941876886 0.970144271 0.950519421 0.892500852 0.903904771 0.960534787 0.920509558 0.898308774 0.878223865 0.905495039 0.898017664 0.947007876 0.897175363 0.958909031 0.933870133 387999276 nitro Pseudomonas fluorescens SS101 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 0.844026012 0.876812132 0.901290882 0.885681291 0.858232215 0.891089985 0.837142379 0.800771554 0.838052263 0.838111192 0.861079081 0.83314293 0.901192803 1.011712315 0.905644374 0.927889426 0.903395218 209401856 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.953231515 0.97415024 0.914198943 0.950828338 0.854575682 0.909941658 0.868641515 0.895009864 0.936911886 0.919536883 0.916161455 0.915781022 0.905072116 0.928434002 0.857164228 0.852220949 0.963722749 0.949521697 187921270 xyla Burkholderia phytofirmans PsJN Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 1.083744073 1.095991521 1.10324599 1.08082304 1.120621738 1.12451641 1.09299178 1.17693903 1.101878439 1.137353998 1.119794042 1.102054998 1.06645904 1.049255771 1.099808581 1.09418087 1.197339845 1.138911004 153963026 sqr uncultured bacterium Sulfur Sulfide Oxidation NA superkingdom:Bacteria; 1.111875031 1.083668404 1.079794991 1.123506388 1.09779366 1.083271126 1.088027027 1.076798414 1.112197972 1.122980544 1.122223051 1.102169059 1.067608024 1.043623159 1.083478423 1.06833123 1.096626571 1.093015912 357045485 xylanase Paraprevotella clara YIT 11840 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Paraprevotella;species:Paraprevotella clara; 0.861689894 0.86309796 0.886519335 0.808067743 0.86916812 0.839522511 0.828147093 0.867435024 0.865195222 0.822305845 0.886209686 0.848675498 0.847481209 0.832990162 0.91800731 0.881520235 307218712 mer Halomonas elongata DSM 2581 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas;species:Halomonas elongata; 0.896276363 0.862487184 0.815489426 0.892277269 0.914114741 0.821792156 0.843403853 0.865191359 0.80471018 0.808828923 0.829870731 145216386 limeh Mycobacterium gilvum PYR-GCK Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 0.849671327 0.814517359 0.856596549 0.850959178 0.855110407 0.844879643 0.867445401 0.853235268 0.880027533 0.863527559 0.851226048 0.860155275 0.860293006 0.868399556 4633558 nosz uncultured bacterium ProE Nitrogen Denitrification NA superkingdom:Bacteria; 0.937699925 0.952275716 0.956015465 0.951413274 0.913261344 1.001999872 0.864017088 0.931872373 0.93321873 0.959178004 0.903036682 0.930193588 0.887774195 0.921797908 0.844337677 0.904041062 0.958074006 1.020679689 146310732 nfsb_2 Enterobacter sp. 638 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 1.122646157 1.074286804 1.064205172 1.111521867 1.110521359 1.103940689 1.094380663 1.094174612 1.138119214 1.091245801 1.104535201 1.094807434 1.077215617 1.081338864 1.088443784 1.102522379 1.065499024 1.073175899 218782822 CsoS1_CcmK Desulfatibacillum alkenivorans AK-01 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfatibacillum;species:Desulfatibacillum alkenivorans; 1.097039995 1.12893913 1.043288147 1.076003377 1.015266842 1.067991989 1.019233134 1.031580222 1.058858565 1.079427459 1.060743842 1.096141984 1.041248154 1.05243994 0.998440578 1.064757366 1.108893314 1.079792993 361063672 amyA Niastella koreensis GR20-10 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;genus:Niastella;species:Niastella koreensis; 0.981439583 1.082348316 1.005167982 0.96962465 0.995245128 0.983293813 0.945480658 0.941604778 0.950034945 0.988611366 0.948490043 0.942672641 0.96597597 0.971280511 0.957384745 0.987902878 0.98311886 0.978072812 118166305 cdh Mycobacterium avium 104 Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 1.3114236 1.283825626 1.276312341 1.277040736 1.237067937 1.270317259 1.243823404 1.263363531 1.265689513 1.255978063 1.256573204 1.295924711 1.224394004 1.229226736 1.206616165 1.2315563 1.283009674 1.252854809 223017319 urec Actinobacillus minor 202 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Actinobacillus;species:Actinobacillus minor; 0.81401917 0.849669569 0.923728513 0.797519321 0.805828787 0.796566046 0.845513422 0.806530056 0.77822282 0.83995498 329945639 amyA Actinomyces sp. oral taxon 170 str. F0386 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 170; 1.001978538 0.909848215 0.944088747 1.008561497 0.898298036 0.980833135 0.943915761 0.97904064 0.981740154 0.914003132 0.928359793 0.930301943 0.936402096 0.938066911 0.920440548 0.948671351 1.006040862 0.939413721 4588030 merb Bacillus sp. RC607 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 0.780131246 0.839920527 153962608 sqr uncultured bacterium Sulfur Sulfide Oxidation NA superkingdom:Bacteria; 1.529734832 1.481249878 1.471025862 1.457859703 1.447427107 1.477393408 1.42257387 1.443236253 1.467609184 1.445595482 1.459812999 1.457721964 1.427792543 1.42122002 1.43920423 1.440992118 1.473714641 1.450361301 354613690 fthfs Saccharomonospora paurometabolica YIM 90007 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora paurometabolica; 1.184017956 1.173615285 1.143682194 1.16844076 1.172395248 1.211395457 1.176638816 1.185730117 1.182372105 1.185245945 1.178985474 1.176734886 1.144810827 1.112808393 1.109186286 1.125312548 1.198550747 1.167004419 387820848 amyA Bifidobacterium animalis subsp. lactis B420 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium animalis; 0.877723087 0.847565273 0.859778269 0.831072876 0.813994432 0.818373706 0.797710064 0.854769835 0.891020569 0.842190901 0.807552585 0.837625094 0.915539697 340795318 narb Corynebacterium variabile DSM 44702 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium variabile; 1.243876588 1.241060022 1.208510143 1.238009316 1.225423886 1.231610213 1.223874572 1.211903931 1.208492699 1.206022366 1.217421126 1.242194188 1.20604325 1.185234702 1.176648058 1.226459518 1.239568242 1.190469922 294677244 FBP_aldolase Rhodobacter capsulatus SB 1003 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter capsulatus; 1.020192338 0.968187856 0.954022988 1.025935061 0.97866723 0.998128832 1.016631439 1.042916705 1.030006308 1.006349236 0.986897416 1.020336781 0.945431788 0.920710971 0.91712105 0.946802075 1.010169295 0.972659854 148254827 linb Bradyrhizobium sp. BTAi1 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.843245118 0.835862319 0.841011776 0.828906589 0.821641475 0.862073037 0.8126276 0.817880303 0.842937986 0.854739259 27349259 soxY Bradyrhizobium japonicum USDA 110 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 1.047415964 1.047595919 1.034591061 1.018003667 1.031180362 1.07645868 1.025806931 0.993919709 1.03165774 1.023813341 1.022473306 1.018647342 0.993982505 1.023642458 1.032759328 1.036585512 1.028183969 1.005726602 315126266 arylest Pseudoalteromonas sp. SM9913 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas; 0.801033462 0.79304329 328880627 RgaE Streptomyces venezuelae ATCC 10712 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces venezuelae; 0.974525361 1.037118578 0.971091549 0.99426589 1.024355836 1.008021685 0.999762757 0.947415497 0.917410956 1.005136209 0.975108398 0.948793724 0.989449413 0.981810923 0.892329574 0.983609892 0.971069298 1.021230488 50541845 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.830623665 0.85624278 0.831981236 0.831329969 0.833736613 0.815825232 0.769966955 0.829056508 197330419 amyA Streptomyces sp. Mg1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 0.978183436 1.009241367 0.960591683 0.97424183 0.953560067 0.966365789 0.949407109 0.943473913 0.966228338 0.897990667 0.945332592 0.947145054 0.890962655 0.904689368 0.879488818 0.90665377 0.978282494 1.007159617 320138164 ppx Selenomonas artemidis F0399 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas artemidis; 0.875673207 0.845139999 0.87966914 0.821768173 0.80793705 0.833177972 0.800103976 0.862367503 0.856927249 88786671 amyA Synechococcus sp. WH 7805 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 0.994790086 0.94216488 0.965502082 1.045722677 0.981845112 1.032799867 0.974847518 0.986520039 1.003255759 0.973621541 1.038829041 0.963931542 0.970084727 0.931651579 0.911747464 0.926164396 1.068217 0.954661368 337748876 mannanase Paenibacillus mucilaginosus KNP414 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 0.929635486 0.888649996 0.878699291 0.901045112 0.827328936 0.873854385 0.816876553 0.910529607 0.88275483 0.841217337 0.895186694 0.872221713 0.843020871 0.860739018 0.923872243 0.859605195 219883358 pcpe Arthrobacter chlorophenolicus A6 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 0.904917374 0.908014456 0.822678826 0.830051785 0.824400062 0.835443883 0.827197372 0.82205463 0.842234354 0.816314156 0.836584415 0.859138815 0.803436226 315622785 nifh Pseudoramibacter alactolyticus ATCC 23263 Nitrogen Nitrogen fixation NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Eubacteriaceae;genus:Pseudoramibacter;species:Pseudoramibacter alactolyticus; 1.06252104 1.094523796 1.033547852 1.044383065 1.044251766 1.062412162 1.022226114 1.02643015 1.072957733 1.064581076 1.06234075 1.035597809 1.034114842 1.034886598 0.976816546 1.026257612 1.031257337 1.078299076 111220842 cdh Frankia alni ACN14a Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia;species:Frankia alni; 1.254398899 1.222718187 1.205634106 1.229678479 1.182189052 1.245921674 1.159165622 1.190071927 1.209339222 1.178650148 1.167058907 1.21733907 1.159612179 1.152343525 1.070939716 1.150099738 1.233121513 1.222728302 117993535 alkb Burkholderia phytofirmans PsJN Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 0.902238062 0.893705865 0.893938148 0.858839437 0.852091166 0.853627052 0.849763778 0.838146256 0.837161547 0.863337602 0.879467014 0.834467702 0.837581727 0.843726946 0.918866876 0.841844715 14025121 mer Mesorhizobium loti MAFF303099 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 1.040281134 1.096255666 1.023114826 1.036646112 0.970842642 0.993156553 0.977533127 1.076142011 1.029673753 1.030937233 1.024078099 1.045771146 0.979791239 0.993027981 0.981413606 0.988651419 1.02066697 1.054284721 297190384 pectinase (pectate_lyase) Streptomyces pristinaespiralis ATCC 25486 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces pristinaespiralis; 1.248280807 1.263436803 1.222397163 1.251266727 1.230812142 1.225787623 1.22057441 1.226699953 1.219573243 1.20143394 1.213363345 1.2455353 1.217992064 1.192761051 1.217570418 1.207942402 1.238704309 1.201468769 77378681 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.096232903 1.063634723 1.028352466 1.091924325 1.04939 1.052967876 1.025915778 1.089084996 1.074801748 1.052157883 1.03447119 1.072758615 1.009222822 1.047212433 1.021164057 1.037176221 1.065234041 1.071875201 365273935 TIM Bradyrhizobium sp. ORS 285 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.936865552 0.91794686 0.918773086 0.957486177 0.942914141 0.969452674 0.864645409 0.958452468 0.91982248 0.930230599 0.89451219 0.946946223 0.865078297 0.917308974 0.882539898 0.89605903 0.936837662 0.951109876 3776043 nitrite_reductase_protist Chlamydomonas reinhardtii Nitrogen Assimilation NA superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Chlorophyceae;order:Chlamydomonadales;family:Chlamydomonadaceae;genus:Chlamydomonas; 1.103271538 1.066329605 1.041201467 1.098926858 1.067868746 1.067570416 1.031744888 1.041379487 1.046113041 1.064008693 1.053291502 1.096051705 1.017283872 1.05200441 1.048275447 1.041840453 1.103069552 1.075575431 146276087 amyA Rhodobacter sphaeroides ATCC 17025 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 0.932096847 0.93708939 0.899963076 0.935635386 0.8525626 0.943958795 0.824482305 0.889178406 0.876409827 0.869640182 0.842258238 0.874748607 0.833661325 0.846310915 0.85240781 0.94626937 0.93709183 388569939 pcpe Hydrogenophaga sp. PBC Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Hydrogenophaga; 0.875901835 0.845253236 0.831647428 0.87931822 0.857829593 0.885394764 0.933959574 0.881626104 0.886945893 0.867391057 0.866569951 0.873327389 0.874662673 0.850542977 0.85473108 0.852500385 0.871690604 0.859357701 325001956 amyA Pseudonocardia sp. P1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Pseudonocardia; 1.282411205 1.234518534 1.231819472 1.208735224 1.218964441 1.25163947 1.194249977 1.206965043 1.203829096 1.229849131 1.202533313 1.223384709 1.178497874 1.178209381 1.16603025 1.188333856 1.203879947 1.217541559 88815118 acetylglucosaminidase marine actinobacterium PHSC20C1 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria; 0.96868632 0.924386079 0.905236005 1.017441128 0.929336669 0.921113896 0.948881587 0.95289611 0.93533118 0.913473696 0.852773409 0.917426803 0.944174195 0.873551195 0.861387859 0.918788033 0.927255771 0.967013934 109452539 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.085663111 1.146976366 1.029296857 1.093945813 1.103265271 1.092322715 1.092444806 1.047557403 1.084509438 1.085001138 1.068819083 1.117682192 1.046389971 1.044709742 1.032370027 1.05305617 1.065704605 1.078525783 209401716 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.897953226 0.95019919 0.849415898 0.922281698 0.898040332 0.940035577 0.876079834 0.881889905 0.837403265 0.889519281 0.836867157 0.897429745 0.859647396 0.865468969 0.866604211 0.835248086 0.914698247 0.95915564 10956993 nagg Novosphingobium aromaticivorans Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 1.066157712 1.055310578 1.035168765 1.069506095 0.992116114 1.015415648 0.979784732 1.006118182 1.046074952 1.012312333 1.00598156 1.008542574 0.975349963 0.996777894 0.968952031 0.998390865 1.079267931 1.038634806 365808300 amyA Streptomyces cattleya NRRL 8057 = DSM 46488 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces cattleya; 1.063795172 1.07791244 1.044453969 1.067250506 1.106891913 1.06126379 1.061368938 1.060809868 1.046223821 1.050871738 1.016581443 1.076177825 1.001526576 1.038575411 0.999213642 1.046435507 1.040166558 1.080136693 389863241 amyA Modestobacter marinus Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Geodermatophilaceae;genus:Modestobacter; 1.395348907 1.358068066 1.35625946 1.352431601 1.354238817 1.397526838 1.337007136 1.341163774 1.346777441 1.338555283 1.336740342 1.339570677 1.332501733 1.307537195 1.328133953 1.335491714 1.381001872 1.334302708 365898783 proO Bradyrhizobium sp. STM 3843 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.951648587 0.915249442 0.812025744 0.940309269 0.875157845 0.907073297 0.84100414 1.021757752 1.034747603 0.9055458 0.810972349 0.876602244 0.853082572 0.894771523 1.193053222 0.825146673 0.881565272 0.952630889 328841848 arsc Asticcacaulis biprosthecum C19 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis biprosthecium; 0.847539296 0.845624571 0.883497851 0.833748982 0.851697005 0.839370532 0.833524702 0.837082908 0.855769809 0.809808659 0.82001502 0.826648229 0.808344613 0.875129298 0.859177239 29832286 ara Streptomyces avermitilis MA-4680 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 1.04912123 1.06212413 1.013802232 1.019745526 1.024159561 1.001816807 0.985001006 1.006690954 0.995501121 0.995325486 1.00131682 1.038640771 1.012551478 0.965604729 0.972467897 1.015255454 1.076642008 1.015733526 296931330 amyA Arcanobacterium haemolyticum DSM 20595 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Arcanobacterium;species:Arcanobacterium haemolyticum; 0.995761226 1.041805616 0.996382947 1.001290248 0.990311675 1.025012346 0.987116745 1.010584723 0.999271307 0.993759332 0.992810167 0.995542605 0.991775666 0.971168566 0.974291603 0.992681741 1.00475783 1.043134414 19888076 nifh Methanopyrus kandleri AV19 Nitrogen Nitrogen fixation NA superkingdom:Archaea;phylum:Euryarchaeota;class:Methanopyri;order:Methanopyrales;family:Methanopyraceae;genus:Methanopyrus;species:Methanopyrus kandleri; 0.92501708 0.877028125 0.906994581 0.955899031 0.906665589 0.878162124 0.917695132 0.925727524 0.951680717 0.873500101 0.936189455 0.932093321 0.884174246 0.903225216 0.924525838 0.887622394 0.914449257 0.884596097 355336224 nagg Pseudoxanthomonas spadix BD-a59 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Pseudoxanthomonas;species:Pseudoxanthomonas spadix; 0.84501101 0.79531604 0.813877591 0.847963123 0.793398763 359839957 amyA Actinoplanes sp. SE50/110 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes; 0.858163753 0.90007619 0.809346769 0.875367295 0.871751468 0.921767412 0.873598868 0.841949264 0.849763347 0.866691866 0.86909657 0.850842913 0.860408599 0.897926762 0.927169615 0.908561579 0.844042147 365968763 acetylglucosaminidase Enterobacter cloacae EcWSU1 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter cloacae; 0.936265921 0.944215972 0.96442868 0.896923924 0.908898595 0.854560284 0.822347014 0.916562022 0.936813735 0.928074753 0.913501771 0.922684073 0.910656432 0.921991534 0.86009279 0.919723868 0.956116619 0.935205349 317970394 GAPDH_Calvin Synechococcus sp. CB0205 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 0.907462125 0.916016959 0.933459003 0.902727648 0.915947061 0.887908631 0.920810192 0.886054184 0.926108829 0.917036894 0.87505875 0.863417499 0.833766217 0.86088956 0.870186347 0.831389875 0.91692311 0.950350347 727442 catechol_b Sphingobium yanoikuyae Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium; 1.030561315 1.06523299 0.998907919 0.996694001 0.989737083 1.036919207 0.973056973 0.912918668 0.988747243 0.935904979 0.939684182 0.97557815 0.89094052 0.943623461 0.907488835 0.915725753 1.034028812 1.059024277 300390414 fthfs uncultured bacterium Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria; 1.143814316 1.197829287 1.134177547 1.117249831 1.131694699 1.172548325 1.091075312 1.104543125 1.121123424 1.124047031 1.126925103 1.121481938 1.132994378 1.130267419 1.13162424 1.089142752 1.134682381 1.174577731 66045437 urec Pseudomonas syringae pv. syringae B728a Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae; 0.917578011 0.867831987 0.897857337 0.928725665 0.884654753 0.89935439 0.889093562 0.894265918 0.882560246 0.914464001 0.966236594 0.86476752 0.916708414 0.953245289 0.851820948 0.884402858 0.919749576 0.896860647 397726430 tfda Sphingobium sp. AP49 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium; 0.845733982 0.836062413 0.810743227 0.843822871 0.824024455 0.857847156 0.825209806 0.816468747 0.877337712 0.837896333 0.813782963 0.813168898 0.788851551 0.811330792 0.83629321 0.863087557 6561503 aps_apra uncultured sulfate-reducing bacterium Sulfur adenylylsulfate reductase NA superkingdom:Bacteria; 0.915383285 0.897410546 0.91881795 0.923505289 0.921218132 0.935208609 0.942656881 0.939314194 0.92162991 0.910100744 0.935929044 0.934557119 0.896220288 0.859914807 0.828310777 0.869661034 0.912669026 0.890791871 325961508 cellobiase Arthrobacter phenanthrenivorans Sphe3 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter phenanthrenivorans; 1.023720641 1.055031986 0.980113741 1.052424845 1.031213351 1.001255219 0.974142215 1.025484966 1.035084124 1.0233562 0.990974202 1.019576692 1.015346443 0.968046316 0.96104911 1.007528232 1.01355527 1.030138483 158331886 ppx Azorhizobium caulinodans ORS 571 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Azorhizobium;species:Azorhizobium caulinodans; 1.039272169 1.046450843 0.994038467 1.03980178 1.034190503 1.056126142 1.010268631 0.992408694 1.006319823 1.015149861 1.028180978 1.018703075 1.018581863 0.996183378 0.995871932 1.028476673 1.028904818 1.045652995 393770781 arsc Novosphingobium sp. Rr 2-17 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 0.907311867 0.833974691 0.913125813 0.936361554 0.827547709 0.898369983 0.82060801 0.90412778 0.963287214 0.888058914 0.884027689 0.907299128 0.888170757 0.897262054 0.844944935 0.88244427 0.941475455 0.852227533 326638087 amyA Actinomyces viscosus C505 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces viscosus; 1.258897467 1.277241449 1.215966897 1.284875265 1.23729627 1.286285415 1.225124116 1.251450405 1.233184847 1.234272638 1.239564282 1.227874517 1.262639593 1.227340557 1.20529765 1.245987588 1.295255439 1.214462225 218241019 xyla Alicyclobacillus acidocaldarius LAA1 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Alicyclobacillus;species:Alicyclobacillus acidocaldarius; 0.817108881 0.829659449 0.852367057 0.862188949 0.867961438 0.929417488 0.886283891 0.870689668 0.905555197 0.887512321 0.888146359 0.914492472 0.890257488 0.848691957 0.815683472 0.917838045 0.868302099 0.881784415 408533501 poba Streptomyces davawensis JCM 4913 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces davawensis; 1.344015288 1.311641584 1.302939314 1.325851005 1.306459878 1.317361853 1.299600366 1.319330644 1.312264299 1.300911199 1.305970773 1.325771637 1.296398174 1.25398908 1.272120184 1.284803497 1.347727094 1.294790706 393765774 phn Methylobacterium sp. GXF4 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 1.33236337 1.300188148 1.293882953 1.326837488 1.260590093 1.32483436 1.286339629 1.31088154 1.297609451 1.289420325 1.266798695 1.295492668 1.24914849 1.239366906 1.209791654 1.270230101 1.300809702 1.269614051 398045262 trze Caulobacter sp. AP07 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 1.09875914 1.074190555 1.050957672 1.086512591 1.061217397 1.075591849 1.039185949 1.052675513 1.087450857 1.047365814 1.037737693 1.064234835 1.011815778 1.01122224 0.991162093 1.016196411 1.092300506 1.074981872 78695260 mdla Bradyrhizobium sp. BTAi1 Organic Remediation Aromatics Aromatic alpha hydroxy acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 1.062671226 1.057013515 1.058592078 1.042612819 0.980638956 1.045070126 0.998487221 1.036236366 1.056856354 1.040308928 1.026038282 1.015897031 1.008146984 1.008845377 0.979400391 1.006305293 1.06814776 1.063607367 307583708 mer Burkholderia sp. CCGE1003 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 1.481727364 1.481740297 1.439041832 1.443128565 1.417207056 1.466129309 1.411278108 1.421059065 1.435400876 1.423236137 1.42708909 1.442412164 1.396111952 1.405926762 1.388052412 1.418950533 1.469911876 1.422517655 13421377 linc Caulobacter crescentus CB15 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter vibrioides; 1.007505177 1.088744785 0.92991741 1.024855507 0.968930145 1.01619558 1.001065841 1.012816577 1.002672239 0.991716448 0.972322675 1.008869317 1.000737739 0.947200204 0.962155016 0.997509013 1.017152675 0.980314477 83316884 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.819019233 0.82690281 67524257 phospholipase_D_fungi Aspergillus nidulans FGSC A4 Carbon Cycling Carbon degradation Phospholipids superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 0.996833098 0.981111221 0.978159232 1.022062654 0.997615307 0.984166108 0.979237506 0.976695912 1.022324048 1.002920372 0.966577814 0.979632369 0.963993618 0.924490357 0.933856576 0.931022564 0.997206039 1.002239767 19568104 exoglucanase Talaromyces emersonii Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces; 0.910390038 0.945655982 0.950147479 0.933530526 0.937550345 0.953151278 0.907124088 0.8660573 0.962587533 0.892303921 0.876300319 0.889255846 0.892220689 0.884797433 0.882496882 0.916727338 0.976935629 0.958409415 90439731 chitinase Photobacterium angustum S14 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium angustum; 0.86113231 0.840843748 0.916374311 0.906525604 0.8484075 0.82953355 0.837083508 0.965098997 0.841160612 9843807 nirs Paracoccus pantotrophus Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus; 1.062002745 0.974521948 1.011430757 0.976804615 0.96590878 0.988906183 0.912616389 0.904430907 0.975446713 1.024915369 1.002222507 0.908043358 0.990986471 0.969374962 0.874154985 0.988374289 1.010721887 0.982642669 328542948 arsc Polymorphum gilvum SL003B-26A1 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;species:Polymorphum gilvum; 1.191932334 1.171015354 1.184348229 1.167485236 1.15846937 1.189684155 1.156700333 1.162257204 1.178298465 1.152963454 1.159125987 1.174965852 1.164731638 1.141132608 1.140885666 1.138583072 1.221753046 1.158473289 294476488 tktA Rhodobacter capsulatus SB 1003 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter capsulatus; 0.831652538 0.817234067 0.844486754 0.815529635 0.82098729 0.841290049 224947212 cellobiase Corynebacterium matruchotii ATCC 33806 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium matruchotii; 1.161576535 1.084238234 1.147876759 1.108534416 1.103660438 1.130933943 1.100138121 1.097212868 1.104964721 1.011284991 1.077863093 1.096360925 1.102683015 0.996452718 1.060909967 1.073626146 1.160466541 1.028475217 68348633 TIM Pseudomonas fluorescens Pf-5 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas protegens; 0.818219445 0.802053008 0.844350576 0.868975946 0.857174892 0.790708115 0.89885573 0.874595115 0.847324223 0.824204758 0.844279754 0.854699317 0.808155325 0.858598882 0.857835067 114543919 rubisco Roseovarius sp. HTCC2601 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pelagibaca;species:Pelagibaca bermudensis; 1.015131046 0.953954334 0.999604257 1.056571857 0.983411478 0.990866257 0.988717948 1.0468462 1.051285233 1.010839718 0.977735153 1.015584812 1.039915334 0.990424164 1.002076336 1.028315332 0.984951048 0.969606313 78697312 tfth Bradyrhizobium sp. BTAi1 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 1.417654098 1.376954128 1.369185563 1.332139728 1.406068907 1.435697548 1.368323809 1.310678286 1.310763587 1.396768 1.374794518 1.361425246 1.325526302 1.379258819 1.349250061 1.345894568 1.359749922 1.366826628 302479762 catechol_b Streptomyces griseoflavus Tu4000 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseoflavus; 0.911358993 0.962259838 0.893642467 0.904047413 0.910024253 0.931286628 0.844414624 0.806794039 0.912194977 0.856666803 0.892671918 0.881300239 0.824613832 0.862619026 0.927071834 0.953115254 333395761 ppx Lactobacillus coryniformis subsp. coryniformis KCTC 3167 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus coryniformis; 1.347877458 1.314041899 1.305592877 1.308337941 1.297903251 1.333131802 1.271753049 1.311061681 1.31586498 1.294212022 1.28716749 1.294322455 1.279245584 1.270573955 1.278848012 1.284517492 1.32132342 1.297733994 288349063 amyA Frankia sp. EUN1f Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 1.338204138 1.358557848 1.322867678 1.329363452 1.304539775 1.327259512 1.2992838 1.303338996 1.33133032 1.3082905 1.299192243 1.334909465 1.263084506 1.268041713 1.242054034 1.277876906 1.308382461 1.272203628 373479042 ccmL Singulisphaera acidiphila DSM 18658 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Singulisphaera;species:Singulisphaera acidiphila; 0.994423634 1.029535606 0.96024936 1.018089197 0.960658351 0.985417095 0.95206079 0.939444552 0.961229249 0.942737772 0.977519075 0.998875734 0.918798253 0.93303289 0.950172597 0.992675103 0.998472648 0.94518253 284017358 xylanase Haloterrigena turkmenica DSM 5511 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloterrigena;species:Haloterrigena turkmenica; 0.953965261 0.909977829 0.884750765 0.892753611 0.883526721 0.894741958 0.91340277 0.912086571 0.937304675 0.883859071 0.86299666 0.867793852 0.871782858 0.837588585 0.816526517 0.91453567 0.911251402 196480020 amyA Phenylobacterium zucineum HLK1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Phenylobacterium;species:Phenylobacterium zucineum; 1.185657548 1.169850946 1.164504239 1.163571299 1.179280946 1.198663042 1.173648815 1.139932266 1.149469737 1.153023607 1.173619094 1.161681387 1.167316985 1.128559651 1.147965468 1.161643935 1.170801747 1.155017256 255319138 ppk Acinetobacter radioresistens SK82 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter radioresistens; 0.883551349 0.946070773 0.950342057 1.005212722 0.963371543 1.01564014 0.955999255 0.921807046 0.939585653 0.997723673 0.955370683 0.927739708 0.953563878 1.0211296 0.920588292 0.972948406 0.926015707 0.990388343 158317443 urec Frankia sp. EAN1pec Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 1.122695059 1.114778775 1.126677297 1.133624116 1.108144354 1.126422962 1.087392834 1.087815989 1.117717245 1.121832968 1.120696729 1.138702316 1.080338936 1.07942983 1.05873788 1.081477276 1.094157204 1.086510351 302464007 pme Streptomyces himastatinicus ATCC 53653 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces himastatinicus; 1.155431379 1.171866915 1.097503359 1.102789851 1.081434053 1.084547224 1.048057843 1.070776625 1.112743342 1.12413248 1.078779408 1.08390756 1.045069264 1.073947714 1.049921875 1.07539687 1.118581708 1.152892005 224283115 acetylglucosaminidase Bifidobacterium bifidum NCIMB 41171 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium bifidum; 0.817086664 0.905798861 0.88070447 0.870621371 0.854210675 0.833491419 0.862715687 0.833628026 0.827248653 0.815328603 0.812646754 0.823221262 0.885420499 0.808755996 0.876274868 0.882281843 54311638 gdh Salinibacter ruber DSM 13855 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Bacteroidetes;order:Bacteroidetes Order II. Incertae sedis;family:Rhodothermaceae;genus:Salinibacter;species:Salinibacter ruber; 1.283590162 1.263040716 1.254333528 1.22667212 1.198957198 1.249442198 1.179812913 1.218289156 1.239436483 1.228972836 1.207299582 1.214368002 1.233215612 1.223603967 1.17981882 1.207259548 1.253350001 1.257175487 330962069 chitinase Pseudomonas syringae pv. maculicola str. ES4326 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 0.799508463 0.867021052 0.904367192 0.839451553 0.86410617 0.891914207 0.817223898 0.850647619 0.902303225 0.866716722 0.831741857 0.850931425 374668148 tktA Burkholderiales bacterium JOSHI_001 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales; 0.889537938 0.946373485 0.930096557 0.921834863 0.897944708 0.922407261 0.869647711 0.871909238 0.869057447 0.931074058 0.908447651 0.907551399 0.883511281 0.91685417 0.892404391 0.913152193 0.911541152 0.906000447 374425732 amyA Bradyrhizobium sp. WSM471 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.841790145 0.816576453 0.835047744 0.895106661 0.814408238 0.845077892 0.823872633 0.836195493 0.812468923 0.85412476 0.878039138 0.859286047 0.859465385 341926033 chitinase Chitiniphilus shinanonensis Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Chitiniphilus; 0.920189784 0.902801252 0.856647932 0.871293748 0.899028526 0.873248098 0.86746248 0.991520346 0.90159402 0.873242103 0.900423671 0.937189209 0.883094039 0.857345963 0.857687791 0.897104727 0.88001934 0.935162487 313148591 amyA Bacteroides fragilis 3_1_12 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides fragilis; 0.85908016 0.851170503 0.842339646 0.916554395 0.812848141 0.879506905 0.882821164 0.89868936 0.878645694 0.862686589 0.909255924 0.842235876 0.879415839 0.824993408 0.852692706 0.854045761 108765844 mer Rubrobacter xylanophilus DSM 9941 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Rubrobacterales;family:Rubrobacteraceae;genus:Rubrobacter;species:Rubrobacter xylanophilus; 1.136689795 1.143216132 1.104420185 1.113245894 1.10674173 1.142243273 1.111245212 1.114076306 1.129875408 1.135779415 1.080084947 1.090472261 1.049063854 1.081286628 1.023082827 1.076624653 1.097679723 1.105445646 118170724 xyla Mycobacterium smegmatis str. MC2 155 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 0.95659479 0.951628839 0.967253595 0.928072944 0.928863291 0.959089215 0.920378178 0.972675986 0.941123844 0.928541619 0.925398992 0.917459853 0.905111364 0.933105896 0.851136632 0.903242591 0.93390022 0.963768594 195945017 mer Burkholderia cenocepacia J2315 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cenocepacia; 0.956650662 0.958923929 0.891243081 1.005236264 0.903353613 0.957615468 0.910002002 0.959098186 0.968172487 0.927553932 0.904583542 0.935217548 0.938249115 0.892118802 0.907605051 0.93733232 0.979476437 0.94938679 89145100 ppk Microbacterium phyllosphaerae Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Microbacterium; 0.957867713 0.95002273 0.929630508 0.938858461 0.953784282 0.972644203 0.925252865 0.891174525 0.93247004 0.937905183 0.97689483 0.986468735 0.94992501 0.947809967 0.914445252 0.932638703 0.953965063 0.925864129 186470670 tktA Burkholderia phymatum STM815 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 1.363614908 1.312788652 1.327511156 1.350460412 1.326070673 1.364826159 1.331596045 1.335379807 1.326152293 1.316213997 1.30850577 1.336319445 1.335569836 1.270082614 1.304047281 1.295787279 1.359683135 1.305580828 347367111 mult_ring_12DiOx uncultured bacterium Organic Remediation Aromatics Other aromatics superkingdom:Bacteria; 0.774720664 0.836545826 0.791124029 0.811920711 0.833621479 0.821740922 0.830408756 0.855717551 27350645 vana Bradyrhizobium japonicum USDA 110 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 1.493384766 1.465154033 1.441104326 1.438198234 1.426528341 1.478426928 1.423430238 1.44447017 1.424654818 1.441366248 1.437183667 1.441621195 1.403230796 1.414405046 1.409688919 1.424837929 1.433893853 1.428436723 220062013 one_ring_23diox Delftia sp. JDC-3 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia; 0.965500568 0.958615993 0.905320738 0.965606428 0.950980306 0.941686497 0.898266622 0.909295095 0.942175741 0.917054608 0.897119354 0.895241193 0.911207771 0.896337612 0.894617087 0.902865563 0.940641238 0.919315517 291440392 pectinase (pectate_lyase) Streptomyces ghanaensis ATCC 14672 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces ghanaensis; 1.10550251 1.132148517 1.110668707 1.139950677 1.097938486 1.111676899 1.127665897 1.133525741 1.110895529 1.11426238 1.110486838 1.128971852 1.070267345 1.101202348 1.101061007 1.074173788 1.112643458 1.096577349 320125456 ppx Geobacter sp. M18 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 0.982858729 0.930253231 0.924713287 0.89244501 0.878578281 0.899021084 0.832679564 0.870609964 0.955162214 0.872604888 0.859481004 0.843161265 0.878476334 0.898438381 0.811793513 0.944161014 0.939762992 225159314 Sir Opitutaceae bacterium TAV2 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Diplosphaera;species:Diplosphaera colitermitum; 0.796669215 0.860948778 0.818595351 0.797489531 0.826278027 0.784086319 0.887407077 0.835398988 0.841890598 0.806025636 0.80029888 70672909 nifh uncultured nitrogen-fixing bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.844437781 0.841291022 0.820358794 0.879685155 0.852457733 0.90600438 0.862489614 0.879921138 0.851166835 0.834981942 0.840018076 0.866890945 0.828784096 0.838437146 319780165 xyla Mesorhizobium ciceri biovar biserrulae WSM1271 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium ciceri; 0.841617785 0.829951525 0.817539656 0.870684666 0.805073277 0.864353889 0.810114717 0.839994156 0.808723778 58701850 catechol_b Pseudomonas mendocina Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.819348676 0.814272162 0.818291627 0.820441215 0.787356624 0.785959128 0.902980985 0.846350843 0.811528334 0.780802752 0.809407764 0.877049405 56129149 cysI Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150 Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 1.116644853 1.122318582 1.153137577 1.09021315 1.083505368 1.069516829 1.052540862 1.071908034 1.059414364 1.05837666 1.058006627 1.071342454 1.070362732 1.046078868 1.03731221 1.124728659 1.109727355 1.080279006 288867726 pula Clostridium hathewayi DSM 13479 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hathewayi; 1.040518083 0.998854456 1.041529581 1.067882938 0.984167697 1.038908573 0.985972774 1.030868527 1.048920128 0.992430884 0.964486914 0.996659861 1.006395626 0.974806536 0.988513219 1.000470605 1.050502916 1.019599639 115524690 tktA Rhodopseudomonas palustris BisA53 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 0.963678055 0.955867587 0.965578067 0.949389344 0.881446571 0.926151321 0.914006828 0.941832925 0.95846357 0.955027782 0.920891275 0.944641028 0.89054916 0.921673966 0.900408248 0.949985897 0.968033454 0.986065634 295800249 amyA Candidatus Koribacter versatilis Ellin345 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Acidobacteria;genus:Candidatus Koribacter;species:Candidatus Koribacter versatilis; 1.040456968 1.078942695 1.042413041 1.045896205 0.997368615 0.994577121 0.976593683 1.012288444 1.009301579 0.996396269 1.005341115 0.993886787 0.97090006 0.959937763 0.891159035 0.922167791 1.038195409 1.044592921 84381321 acetylglucosaminidase Janibacter sp. HTCC2649 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Janibacter; 0.999688387 1.035530678 0.881132515 0.998125451 0.979112044 1.032837707 1.010902966 0.975552871 0.987647369 0.986507132 0.9831421 1.00150078 1.000354717 0.975965858 0.976437943 0.986367777 0.99854796 1.023576645 288888471 CsoS1_CcmK Klebsiella variicola At-22 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella variicola; 0.900798819 1.036472038 1.02090196 0.993046199 0.991730742 1.000456819 0.930772958 0.952294845 0.873774435 0.950898034 0.902825427 0.959677958 0.948451699 0.870916921 0.922309698 0.956080807 0.957557749 1.002489512 32307917 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.84510354 0.825325681 0.882078586 0.818008931 0.872647044 0.848447751 0.885030695 0.847843356 0.855408521 0.919216148 0.866214773 0.84863926 0.816297004 0.891971782 0.941046908 0.892206481 0.878812484 311893532 amyA Kitasatospora setae KM-6054 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Kitasatospora;species:Kitasatospora setae; 1.266634875 1.282477804 1.231252569 1.256875051 1.222125862 1.286298471 1.212532233 1.219189171 1.231568551 1.221887773 1.232063684 1.242306267 1.224256382 1.203330324 1.197588498 1.231184345 1.264159262 1.245588865 171060369 proO Leptothrix cholodnii SP-6 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Leptothrix;species:Leptothrix cholodnii; 1.298726191 1.287059609 1.247140345 1.274857008 1.251803669 1.2902084 1.246420915 1.255007073 1.266773722 1.245178675 1.24584689 1.269747805 1.226413093 1.220335732 1.22641016 1.252621967 1.271015738 1.259275291 373549237 cutinase Mycobacterium tusciae JS617 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tusciae; 1.071089453 1.016773632 1.04313099 1.113643463 1.031846677 1.06129477 1.053653381 1.080142887 1.055966457 1.024545208 1.034877309 1.07242648 1.007900724 0.964526171 0.976022695 0.997138639 1.098386125 1.046617463 300333169 atza Oscillatoria sp. PCC 6506 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Oscillatoria; 0.972534254 0.961194405 0.949151601 0.994382153 0.977002314 0.960820324 0.965782594 0.963007707 0.941874796 0.92079971 0.928465221 0.903717991 0.910150387 0.880313616 0.821085021 0.865462966 0.928901048 0.974261065 302545709 pectinase (pectate_lyase) Streptomyces hygroscopicus ATCC 53653 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces himastatinicus; 0.82088364 0.879936133 0.834638247 0.815155744 0.925854728 0.88167213 164498987 amie Mesorhizobium sp. F28 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium; 1.031783669 1.032234729 1.042842143 1.01367186 0.950179576 0.994957777 0.951339614 0.992332129 1.013422265 1.000358364 0.988514367 1.02475754 0.989889819 0.97247274 0.970624365 0.994323857 1.044731377 1.004464774 116609412 amyA Arthrobacter sp. FB24 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 1.057227607 1.035437018 1.059121902 1.100198176 1.027564219 1.106376496 1.036240046 1.029493208 1.024515334 1.039568345 1.042874772 1.067095018 0.970274605 1.037774921 1.008435262 1.010003656 1.065172866 1.078712359 335421198 B_lactamase_A Salinisphaera shabanensis E1L3A Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Salinisphaerales;family:Salinisphaeraceae;genus:Salinisphaera;species:Salinisphaera shabanensis; 1.089058159 1.052397869 1.071727673 1.101190497 1.059793963 1.08862607 1.060362441 1.056298368 1.105127256 1.067409173 1.064562408 1.08135236 1.078620273 1.040421382 1.059856238 1.021496835 1.119846491 1.040606376 6624916 mannanase Aspergillus niger Carbon Cycling Carbon degradation Hemicellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 0.977455091 0.944431601 0.985756827 0.97086436 1.002746201 1.029187074 0.98988182 0.896196185 0.923922783 1.03815614 1.023079061 0.963552224 0.994761602 1.062252192 0.978372387 1.009040098 0.943348059 0.979945371 297164447 amyA Truepera radiovictrix DSM 17093 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Trueperaceae;genus:Truepera;species:Truepera radiovictrix; 1.112132447 1.117350263 1.108301247 1.09745206 1.086068717 1.14434385 1.112229592 1.108542924 1.093062043 1.088749759 1.075745165 1.063838395 1.063303469 1.064408511 1.053695126 1.053133723 1.098873283 1.089963974 305412308 terc Bacillus subtilis subsp. spizizenii str. W23 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus subtilis; 0.823849271 0.841323687 0.776527869 0.806788148 0.822395025 0.812956293 356481393 mult_ring_12DiOx Mycobacterium thermoresistibile ATCC 19527 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium thermoresistibile; 0.832000482 0.823970125 0.832662959 0.807452727 0.811687852 0.831482333 0.825582665 0.844386931 111021400 nhh Rhodococcus sp. RHA1 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 1.081986606 1.145650362 1.104549601 1.066295745 1.038476009 1.086645079 1.02729187 1.080582629 1.090612279 1.088689207 1.050036244 1.077290622 1.001720664 1.021645909 0.97507488 1.043370633 1.071705429 1.055425623 71747748 GAPDH_Euglenozoa Trypanosoma brucei Other Phylogenetic NA superkingdom:Eukaryota;order:Kinetoplastida;family:Trypanosomatidae;genus:Trypanosoma;species:Trypanosoma brucei; 0.877295188 0.863270738 0.860302721 0.853871234 0.830762311 0.866001024 0.852660678 0.828404395 0.861166927 0.831012958 0.809776277 0.851504476 0.80589081 0.814550253 0.846395193 0.868554984 33320471 dsra Desulfovibrio piger Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 1.21358774 1.212198075 1.158332604 1.157733488 1.168914973 1.187872856 1.169163725 1.184859053 1.201398599 1.172884664 1.161065116 1.154418815 1.115123764 1.120777349 1.088518498 1.143229169 1.184550024 1.218019432 269839378 chrr Thermobaculum terrenum ATCC BAA-798 Metal Homeostasis Chromium Detoxification superkingdom:Bacteria;genus:Thermobaculum;species:Thermobaculum terrenum; 0.855762347 0.826715574 0.844471863 0.808577629 0.818426742 0.835211733 0.823983893 0.846401383 0.813507221 0.808881453 0.802437577 0.845746788 0.829097079 0.813082325 0.821556947 0.833006791 0.816573482 154159550 soxY Xanthobacter autotrophicus Py2 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 0.980695654 0.969195325 0.970234852 0.986642833 0.974130836 0.946540426 0.948620466 0.965827637 0.955679946 0.9545568 0.954498673 0.984304922 0.975765316 0.948698094 0.950871718 0.95329286 0.955012057 0.972323948 308213057 alkb uncultured bacterium Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria; 0.94887477 0.967637829 1.063385077 0.947765554 0.950200611 1.012702204 0.966636768 0.934769045 0.951822191 1.050821445 0.996872771 0.972696768 0.993416044 1.143473861 0.990997723 0.977508779 1.003063926 0.94950696 160361761 tktA Delftia acidovorans SPH-1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 0.964157257 1.027247187 0.890495107 0.891344866 0.980541382 1.03842275 0.929576715 0.986460733 0.870478926 1.026299456 0.922543856 0.968883841 0.949253146 0.987642377 0.887062977 0.971104859 0.991601475 1.005623955 258654208 xylj Nakamurella multipartita DSM 44233 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nakamurellaceae;genus:Nakamurella;species:Nakamurella multipartita; 0.979088745 1.005305033 0.985582466 0.98229975 0.944321983 0.963462376 0.923646366 0.929462064 0.891460455 0.941581301 0.892734535 0.975865957 0.919796581 0.906873028 0.879133638 0.935093678 0.964571546 0.985512674 164455698 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 1.19754712 1.132790593 1.174429774 1.164803977 1.14597223 1.15818897 1.115709783 1.164110788 1.177994509 1.134616423 1.148051615 1.155982821 1.14218919 1.136199248 1.125127124 1.135576571 1.158698345 1.136157584 354957088 bphc Bradyrhizobium japonicum USDA 6 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 1.290818904 1.24659942 1.232894228 1.277669085 1.255643367 1.268359767 1.236222359 1.261772467 1.240102374 1.237973693 1.248737882 1.280509707 1.224586859 1.227990855 1.253791508 1.238594178 1.276794226 1.233561195 81299925 pgk Synechococcus elongatus PCC 7942 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus;species:Synechococcus elongatus; 1.20457817 1.145801923 1.20669923 1.215982757 1.166458755 1.21752238 1.154210243 1.177112767 1.211162663 1.191786106 1.190744646 1.196850296 1.147168718 1.173840212 1.186383455 1.210904776 1.257642813 1.145848803 188595290 nrfa Porphyromonas gingivalis ATCC 33277 Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Porphyromonas;species:Porphyromonas gingivalis; 1.016964187 1.004060146 1.074138946 1.081240514 0.982944358 1.014490229 0.990951141 0.987489133 1.012961171 0.998477503 1.017305836 1.012714897 1.033291256 0.985314163 0.922547206 1.013791297 1.064195908 0.985612067 119947975 cda Arthrobacter aurescens TC1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter aurescens; 1.234739611 1.218979741 1.22828663 1.258720683 1.230882317 1.237679227 1.237832373 1.270931707 1.243294891 1.216982411 1.190017678 1.262691631 1.199796316 1.185254911 1.183789264 1.216650161 1.207029551 1.21391112 83852091 phytase Oceanicaulis sp. HTCC2633 Phosphorus Phytic acid hydrolysis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Oceanicaulis; 1.031472625 0.981502427 1.00407892 1.055606434 0.999821438 1.019135442 1.023728165 1.027812222 1.04114934 1.005700019 1.007567627 1.031197201 1.001608175 0.970522174 0.955867399 0.956334994 1.029078409 0.983221633 258575423 phospholipase_C_fungi Uncinocarpus reesii 1704 Carbon Cycling Carbon degradation Phospholipids superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Onygenaceae;genus:Uncinocarpus;species:Uncinocarpus reesii; 0.972702185 0.910514654 0.909467776 0.974414494 0.878517634 0.929288662 0.925565571 0.95021311 0.954446634 0.881099937 0.919620666 0.924007061 0.915799906 0.89070857 0.848652044 0.890448547 0.988919277 1.014696708 238577226 badh Moniliophthora perniciosa FA553 Organic Remediation Aromatics Other aromatics superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Marasmiaceae;genus:Moniliophthora;species:Moniliophthora perniciosa; 0.969795398 0.954957967 0.951298171 0.937495649 0.965078566 0.930766861 0.964728304 0.949881917 0.9353381 0.941072087 0.859864757 0.927711105 0.848896549 0.861305863 0.841387016 0.830732784 0.94672932 0.974554735 196196114 ppx Alcanivorax sp. DG881 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax; 1.217870281 1.133031381 1.149928496 1.200438523 1.174464594 1.151873645 1.186963892 1.176071554 1.209842713 1.157844102 1.158543599 1.196852749 1.107702238 1.111026796 1.093050632 1.126762444 1.188989058 1.167668645 53850902 dsrB anaerobic bacterium EtOH8 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae; 0.892872467 1.067119905 294884053 aoxb bacterium enrichment culture clone aoxauto45_4W Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 1.174138972 1.222885233 1.160707401 1.151543562 1.188776982 1.167232914 1.148191198 1.150124079 1.160591296 1.153111865 1.185152799 1.188731682 1.174321768 1.13016731 1.132497657 1.128152061 1.141074213 1.168474613 182680368 GAPDH_Calvin Beijerinckia indica subsp. indica ATCC 9039 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Beijerinckia;species:Beijerinckia indica; 0.958328761 0.966839377 0.926271464 0.968316987 0.95866309 0.949190938 0.971631652 0.958188073 0.949647854 0.983680247 0.933651467 0.974214398 0.916654897 0.887781583 0.865522269 0.918394307 0.951180396 0.955334915 89043141 ppx Oceanicola granulosus HTCC2516 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola granulosus; 1.11586525 1.085617368 1.101623391 1.11304764 1.079074907 1.110101617 1.087120943 1.114791427 1.092694776 1.055383677 1.086305573 1.099697602 1.007843525 1.002937947 1.007335446 1.04010769 1.086195017 1.076742367 177839903 amyA Opitutus terrae PB90-1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 0.956496381 0.883818376 0.907572286 0.912282507 0.90685556 0.922017636 0.936545369 0.903179583 0.879484046 0.903330357 0.859147662 0.901758043 0.828643998 0.884803879 0.842083856 0.852559956 0.969419757 0.969595953 295937 exoglucanase Trichoderma viride Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Hypocreaceae;genus:Hypocrea; 0.960051907 1.017264512 0.903527447 0.97726375 0.986506624 0.97758033 0.97799675 0.948408163 0.892407005 0.896797711 0.812346093 0.922211527 0.951537317 0.881977696 0.998401554 0.982713176 0.951487894 1.01385458 239923937 pchcf Pseudomonas fluorescens Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 1.027935902 1.036357662 0.961687653 1.00317128 0.939912541 0.987997675 0.933538131 0.977302278 0.985073422 1.009658724 0.949698437 0.984330519 0.929488532 0.980245336 0.930464725 0.918901694 1.026251898 1.015281594 350551829 PRI Thiorhodospira sibirica ATCC 700588 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thiorhodospira;species:Thiorhodospira sibirica; 1.009174627 1.074655918 1.000556546 1.074595767 1.045960003 1.089314866 1.034766436 1.039416172 1.050264228 1.113038973 1.062875723 1.073602126 1.045082435 1.041904124 1.003206038 1.05716203 1.005353811 1.061739315 313131902 amyA Bifidobacterium bifidum NCIMB 41171 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium bifidum; 1.124660929 1.136752041 1.130455632 1.113907075 1.119410803 1.142786161 1.101592359 1.099652428 1.108522079 1.09432678 1.105399808 1.108811983 1.110074971 1.073327427 1.082375384 1.089589781 1.13542757 1.124416019 77378749 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.835128633 0.847633098 0.82973712 0.807500192 0.79752812 0.840506105 0.833872694 0.811653082 0.795079741 0.807308796 0.838989854 0.842773966 0.822922208 0.82986304 390452513 chitinase Paenibacillus peoriae KCTC 3763 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus peoriae; 0.852127953 0.842637947 0.874298774 0.817242738 0.882884263 0.880137897 0.811170537 0.845100826 0.812431093 0.849753978 0.846190554 0.904731875 30269557 nasa uncultured bacterium Nitrogen Assimilatory N reduction NA superkingdom:Bacteria; 0.813586592 0.785871401 242215141 exopolygalacturonase_fungi Postia placenta Mad-698-R Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Postia;species:Postia placenta; 1.121702576 1.100088717 1.091055794 1.146878779 1.084059386 1.084167268 1.168619981 1.118839863 1.140051284 1.096654388 1.092433642 1.111328835 1.073053559 1.077056572 1.084652716 1.098800323 1.11718185 1.076921531 334103610 bphd Sphingobium chlorophenolicum L-1 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium;species:Sphingobium chlorophenolicum; 0.821512763 0.834569931 0.823297534 0.836530684 0.859991991 0.834745911 0.849966727 0.856240661 0.852753277 0.825388933 0.834783667 0.816261602 0.823337836 0.814583034 0.854330708 0.836034981 320013047 vgb Streptomyces flavogriseus ATCC 33331 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces flavogriseus; 1.334827515 1.301077314 1.305789219 1.343605478 1.26587213 1.339481315 1.288051516 1.322844489 1.309403634 1.285951144 1.287123531 1.300652197 1.255259415 1.276867051 1.270447323 1.312750276 1.329810134 1.279325427 302418412 mannanase Verticillium albo-atrum VaMs.102 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticillium;species:Verticillium alfalfae; 0.962679021 0.915574507 0.904554266 0.90318716 0.906163349 0.938719118 0.929145367 0.953972393 0.891182248 0.927810113 0.91627951 0.882051519 0.883667905 0.85149822 0.813632591 0.818522626 0.881709279 0.896437395 147886254 phenol_oxidase uncultured bacterium Carbon Cycling Carbon degradation Lignin superkingdom:Bacteria; 0.962708407 0.901478052 0.951001107 0.956911355 0.92093914 0.918508513 0.95518691 0.944355936 0.944621148 0.946922448 0.954316979 0.936119484 0.856773669 0.894494834 0.818055763 0.910355036 0.890187926 0.933515923 398038886 tfda Novosphingobium sp. AP12 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 1.059788362 1.066118376 1.0083968 1.04891612 1.025872733 1.023405897 1.018832582 1.0084731 1.008213859 1.035623027 1.011380936 1.03222359 1.049175057 1.013505184 0.991048989 1.02475698 1.051947841 1.033317603 76666836 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.082056223 1.087435473 1.043500122 1.077924404 1.013826667 1.044504271 1.015134696 1.024225571 1.059855695 1.042545075 1.01612377 1.041184669 1.002075734 0.99753854 1.01533827 1.036716805 1.08834593 1.068060252 159882154 ccl Hydrogenivirga sp. 128-5-R1-1 Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Aquificaceae;genus:Hydrogenivirga; 0.994647844 0.988528284 0.985360853 0.969326742 0.986593972 1.016072599 0.950280752 0.961914707 0.997873124 0.965999222 0.927218841 0.952956927 0.965764721 0.949616314 0.9285468 0.933843201 0.997709158 0.97463694 297563119 endoglucanase Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Nocardiopsis;species:Nocardiopsis dassonvillei; 0.899207595 0.981767286 0.916466276 0.957389738 0.928580805 0.978382615 0.918620914 0.91545925 0.907208989 0.961367887 0.927814732 0.93337101 0.936377625 0.942577553 0.937043849 0.910971826 0.956329236 0.962099844 398898480 tfda Pseudomonas sp. GM50 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.805632202 0.807976737 0.758881873 0.81325246 0.825849684 0.809159269 0.844392764 0.832284134 0.812218333 336069221 amyA Prevotella multisaccharivorax DSM 17128 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella multisaccharivorax; 0.982537159 1.003307588 0.964457371 0.984433228 0.9755758 1.049750687 0.991452246 1.053703178 0.956184929 0.976931662 0.9941062 0.947665845 0.975472545 1.005311 0.961570635 0.987444956 0.988176321 0.985325047 296141515 bphd Tsukamurella paurometabola DSM 20162 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Tsukamurellaceae;genus:Tsukamurella;species:Tsukamurella paurometabola; 1.293826586 1.297903185 1.255448417 1.265892303 1.248900252 1.269536939 1.24459279 1.260953383 1.256435048 1.284198255 1.249531457 1.282222421 1.211142987 1.22707125 1.193465013 1.22417622 1.258349447 1.237496896 196229793 amyA Chthoniobacter flavus Ellin428 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Verrucomicrobia;class:Spartobacteria;genus:Chthoniobacter;species:Chthoniobacter flavus; 1.467267233 1.450428991 1.445078255 1.448013852 1.431330704 1.424148677 1.424159549 1.443612667 1.417946746 1.391223554 1.421156672 1.448404327 1.404256483 1.382168972 1.425721957 1.434690241 1.438647608 1.379617389 47600976 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.925215003 0.824108935 0.856137265 0.934075223 0.880178227 0.849551254 0.904963891 0.958116446 0.921015154 0.874354142 0.859362613 0.922624399 0.872517463 0.839658551 0.881020751 0.880330864 0.87507811 0.906624552 169617509 tannase_Cdeg Phaeosphaeria nodorum SN15 Carbon Cycling Carbon degradation Tannins superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Phaeosphaeriaceae;genus:Parastagonospora;species:Parastagonospora nodorum; 0.884470189 0.863812527 0.893545438 0.878461605 0.821351839 0.878832697 0.866399151 0.857153296 0.826172656 0.833849868 0.951311619 0.921908931 27529179 pmoa uncultured bacterium Carbon Cycling Methane Methane oxidation superkingdom:Bacteria; 0.849526109 0.86812098 0.879526856 0.855629274 0.844061792 0.902047208 0.847881269 0.894957057 0.898434986 0.879646109 0.870408619 0.853439702 0.820080068 0.859772785 0.877341661 0.864628527 0.865835905 0.872312465 157285620 napa uncultured bacterium Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria; 0.794762526 0.830509475 0.869916373 0.814779276 0.806614198 0.808364522 0.843355765 0.833870507 0.844742716 182679919 amyA Beijerinckia indica subsp. indica ATCC 9039 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Beijerinckia;species:Beijerinckia indica; 0.919890446 0.960499113 0.905726536 0.885050986 0.855522743 0.911954008 0.874757285 0.976107079 0.92257463 0.917976887 0.854147008 0.877058564 0.850038448 0.899982202 0.810256014 0.837400836 0.895684466 0.970333178 254029956 narb uncultured bacterium Nitrogen Assimilatory N reduction NA superkingdom:Bacteria; 0.994567773 0.970828993 0.986639443 0.988995106 0.944218578 0.967387177 0.946090804 0.964634656 0.914398429 0.984306192 0.981435661 0.977384371 0.904469754 0.893738791 0.868746927 0.874532006 0.984994629 0.996343116 385677079 amyA Amycolatopsis sp. ATCC 39116 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis; 0.798391138 0.79932916 114327490 TIM Granulibacter bethesdensis CGDNIH1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Granulibacter;species:Granulibacter bethesdensis; 0.811327864 0.805839215 293604820 napa Achromobacter piechaudii ATCC 43553 Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter;species:Achromobacter piechaudii; 1.040427094 1.019646105 1.034358652 1.049824529 1.021962486 1.035771022 1.005246563 1.019262654 1.030536151 1.029557866 1.005042176 1.056008447 0.999656351 0.999884733 0.992462941 0.994147052 1.022445727 1.012001821 222543369 phytase uncultured bacterium Phosphorus Phytic acid hydrolysis NA superkingdom:Bacteria; 0.932474952 0.983918452 0.881663123 0.968728631 0.955187507 0.992804705 0.915804707 0.90006575 0.923842441 0.921635055 0.908779088 0.930308273 0.905277725 0.933213594 0.915873539 0.927013767 0.960092818 1.030852445 289504110 amyA Anaerobaculum hydrogeniformans ATCC BAA-1850 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Synergistetes;class:Synergistia;order:Synergistales;family:Synergistaceae;genus:Anaerobaculum;species:Anaerobaculum hydrogeniformans; 0.79122252 0.844062612 0.824341737 0.849096752 0.804103655 0.816646248 0.811445304 0.820602439 0.860118156 0.808898648 0.843919239 0.752840619 0.843783585 118424524 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.979491366 0.967062229 0.950236198 1.014281356 0.966302061 0.9806814 0.943647113 0.956627729 0.98254474 0.94905182 0.931284398 0.986390599 0.985232364 0.965299626 0.948240682 0.963644202 0.992000721 0.973476247 149359187 tfda Marinobacter algicola DG893 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter algicola; 1.080415155 1.041168415 1.104316875 0.980488558 0.982182488 1.022227918 0.974393177 0.987459778 0.981144831 0.993788185 1.044443646 0.990888458 0.970509886 0.977759651 0.977487027 0.996330568 0.974186138 1.010499669 346921804 nitrilase Azospirillum amazonense Y2 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum amazonense; 1.207704352 1.188650412 1.186478634 1.199415953 1.197797856 1.211001507 1.221091408 1.207411529 1.196778096 1.18479923 1.194812757 1.187709629 1.192095658 1.127614096 1.146547041 1.174638108 1.196524172 1.176988132 112462821 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.01598808 1.012195244 0.988589557 1.040724904 0.981506639 1.029724189 0.994017404 1.001359669 0.996835734 1.01317619 0.997218052 0.996340218 1.000083259 1.000960526 0.945566072 1.003487404 1.020567364 1.000391719 116743270 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.158201063 1.198776996 1.174574103 1.176971923 1.169979912 1.168286272 1.117077958 1.188069774 1.158546952 1.129493189 1.17475547 1.187484143 1.1390003 1.116349538 1.093795249 1.090673358 1.13575098 1.134837123 189306829 rubisco uncultured bacterium Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria; 0.806266933 0.838292944 0.798453883 0.825429619 0.82231126 0.805685335 0.787779609 0.851813785 0.859840493 0.839044976 0.805543718 0.857637477 37665541 beta_agarase Microbulbifer elongatus Carbon Cycling Carbon degradation Agar superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Microbulbifer; 0.851815367 0.85813267 0.848149354 0.800572703 0.829367456 0.81312104 0.842796377 0.839216121 0.872664085 0.808325462 0.817553087 0.860922956 292634548 pme Bacteroides ovatus SD CMC 3f Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides ovatus; 1.048090961 1.021608995 1.074932917 1.029048887 0.978068079 0.974678487 1.016459233 1.005669222 1.038833301 1.053890968 1.028780422 1.033293409 0.968384817 1.003340915 0.973413112 0.984044073 1.02278368 1.041337252 118591752 terc Stappia aggregata IAM 12614 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 0.847459337 0.88506239 0.866606243 0.858314159 0.880005994 0.861176779 0.858712196 0.864763346 0.870768952 0.880041435 0.901728071 308799009 actin_Viridiplantae Ostreococcus tauri Other Phylogenetic NA superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Mamiellophyceae;order:Mamiellales;genus:Ostreococcus; 1.04210464 1.015792028 1.043871938 0.960151095 1.018019248 1.017393772 0.994185093 0.970270952 1.024739606 1.069935939 1.07205753 1.035512628 0.973298049 1.051225045 1.007967026 0.958840812 0.973413165 1.044470414 188989555 RgaE Xanthomonas campestris pv. campestris str. B100 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas campestris; 0.874329092 0.866278016 0.859769019 0.888902876 0.873410423 0.878988571 0.869852568 0.847851157 0.840141932 0.810994012 0.857766057 0.826297955 0.901595156 0.900274093 295676595 cysJ Burkholderia sp. CCGE1002 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 0.890786495 0.964370034 0.931896046 0.910728487 0.932969515 0.958231941 0.872460175 0.903628849 0.903213132 0.870305149 0.863342414 0.894362411 0.872808459 0.840016071 0.888479594 0.918728026 0.939413493 0.940387074 117164775 mannanase Streptomyces ambofaciens ATCC 23877 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces ambofaciens; 0.826061814 0.874825497 0.866047986 0.875895071 0.883468519 0.848943139 0.828246586 0.80496927 0.880164745 0.834213598 0.85471176 0.85842885 238761483 endoglucanase Yersinia kristensenii ATCC 33638 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia kristensenii; 1.237872999 1.205579372 1.17154746 1.162030645 1.163008007 1.194613928 1.166812091 1.22252505 1.227960464 1.143499638 1.153692705 1.130820342 1.158085401 1.176138674 1.121207486 1.144151455 1.189061991 1.179456448 255319335 FBP_aldolase Acinetobacter radioresistens SK82 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter radioresistens; 0.864903061 0.797681808 0.817243712 0.846198795 0.854546978 0.794193709 0.876317377 0.871279809 0.881543787 0.822305323 0.841916563 0.866136962 0.811257166 0.822039896 0.870902079 0.848102017 0.819930691 254523597 ppk Stenotrophomonas sp. SKA14 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas; 0.966621314 0.923793983 0.852722314 0.92474402 0.827676626 0.879329292 0.855162001 0.870530855 0.908530137 0.862640778 0.878067936 0.898928283 0.863444326 0.89185867 0.849440284 0.878611073 0.928603897 0.838458609 297616325 ppx Syntrophothermus lipocalidus DSM 12680 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Syntrophomonadaceae;genus:Syntrophothermus;species:Syntrophothermus lipocalidus; 1.056048589 1.001595855 1.049513752 1.040054597 1.04677178 1.063078901 1.210856476 1.025347161 1.043636711 1.059311692 1.049747629 1.080568704 1.03731489 1.059450401 1.018841907 1.028379877 1.030451242 1.043731077 126729151 arsc Sagittula stellata E-37 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 0.799931883 0.914464464 0.805071677 0.813444677 0.849663499 0.82566443 0.823182814 0.866509416 0.840866632 0.845767378 0.86747168 0.851572359 0.817253698 0.897948665 152029691 alginase Anaeromyxobacter sp. Fw109-5 Carbon Cycling Carbon degradation Alginate superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter; 1.331804223 1.300830901 1.289368165 1.339092578 1.293254741 1.316711043 1.333725657 1.322705516 1.304544374 1.27236899 1.273229037 1.328729064 1.274871738 1.269436872 1.285988489 1.296635034 1.308140874 1.276102938 55978091 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.883854248 0.828868057 0.90606444 0.79566143 0.846163756 0.853238278 0.87536488 0.804460888 0.820092559 0.90850038 0.890866776 0.830061907 0.76682308 0.880120435 269125758 cutinase Thermomonospora curvata DSM 43183 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Thermomonosporaceae;genus:Thermomonospora;species:Thermomonospora curvata; 1.379722266 1.358431449 1.329057375 1.34900766 1.318477457 1.369302487 1.329250261 1.341240567 1.316564741 1.325144955 1.329354935 1.348228197 1.316109325 1.329882895 1.298243926 1.339831938 1.355362836 1.325603146 374374271 rgl Niabella soli DSM 19437 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;genus:Niabella;species:Niabella soli; 0.814256079 0.854042424 0.86026638 0.889198642 0.89580042 0.850181714 0.840737015 0.864040202 0.819505735 0.817620948 0.85738335 0.845538611 0.859744456 0.822934731 0.866722546 0.860646918 67087537 arylest Azotobacter vinelandii AvOP Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Azotobacter;species:Azotobacter vinelandii; 0.904042152 0.911343473 0.960256428 0.90796785 0.884859662 0.90700011 0.872940266 0.865310854 0.905099205 0.955041781 0.880003305 0.89598474 0.853941406 0.944919511 0.82485378 0.839606668 0.915205946 0.946243032 38520871 nagg Fusarium oxysporum f. sp. lycopersici Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;genus:Fusarium;species:Fusarium oxysporum; 0.882293486 0.848469956 0.929336775 0.853504712 0.843255242 0.811174876 0.820099126 0.84354558 0.874025033 0.833982471 0.82102447 0.833588117 0.891979693 0.856663996 0.861487638 0.84103377 0.887021606 421953172 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.803043132 0.825819624 0.842055128 0.773983608 0.816114075 149751925 tehb Dorea longicatena DSM 13814 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Dorea;species:Dorea longicatena; 0.796324809 0.782553045 323319521 arsc uncultured bacterium Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 0.783302221 0.824670884 0.810437282 0.823692588 348618649 tktA Candidatus Glomeribacter gigasporarum BEG34 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Candidatus Glomeribacter;species:Candidatus Glomeribacter gigasporarum; 0.833177602 0.913152355 0.865223667 0.914724654 0.842008188 0.86304932 0.894221174 0.906236499 0.882558141 0.893093442 0.848840778 0.874551276 0.893820825 0.808758973 0.805037221 0.844307611 0.967574577 389715875 amyA Microcystis aeruginosa PCC 9717 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Microcystis;species:Microcystis aeruginosa; 0.860295349 0.812734086 0.876723261 0.879754002 0.821488924 0.888328273 0.877046666 0.872768529 0.863064457 0.914921403 0.841077577 0.868990071 0.836982248 0.82142022 0.85960578 0.846689187 0.848981256 83414995 phenol_oxidase uncultured Termitomyces Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Lyophyllaceae;genus:Termitomyces; 0.786269277 0.817098559 0.846403867 0.870724881 0.827270296 291508621 alginase Pseudomonas alkylphenolia Carbon Cycling Carbon degradation Alginate superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.81842631 0.888236639 0.883592397 1.031072737 0.955047535 0.862485113 1.069501134 0.908721628 1.08010023 0.987610544 0.87333195 0.996746464 0.936871694 0.834530301 0.828592292 0.899194989 0.854558011 0.933871394 262335868 acetylglucosaminidase Rhodothermus marinus DSM 4252 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Bacteroidetes;order:Bacteroidetes Order II. Incertae sedis;family:Rhodothermaceae;genus:Rhodothermus;species:Rhodothermus marinus; 0.869297174 0.849419615 0.798582645 0.8739342 0.806198178 0.814907226 0.812493481 0.854171191 0.857240556 18149134 nhh uncultured bacterium Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria; 0.959787969 0.941210759 0.951453182 0.983600071 0.910877055 0.903390316 0.870881104 0.952775981 0.955182299 0.882416342 0.902462812 0.918910506 0.927940746 0.888797703 0.909156777 0.930041993 0.969577502 0.917408388 393758284 nitrilase Alcaligenes faecalis subsp. faecalis NCIB 8687 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Alcaligenes;species:Alcaligenes faecalis; 0.923918661 0.871191706 0.92366277 0.960710116 0.947372776 0.960720316 0.950569414 0.923163571 0.943797454 0.877976675 0.865668879 0.904556415 0.858696246 0.923666966 0.990195769 0.901147936 0.950444185 0.913191138 149201793 nosz Roseovarius sp. TM1035 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 0.797769219 0.820988066 0.805890985 0.835650368 0.814699047 0.796910849 0.830946028 0.863348189 0.878831349 119773786 nrfa Shewanella amazonensis SB2B Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella amazonensis; 0.990043066 0.81880088 0.928587862 0.834328156 0.753409011 0.817473375 325192594 hsp90_Stramenopiles Albugo laibachii Nc14 Other Phylogenetic NA superkingdom:Eukaryota;order:Albuginales;family:Albuginaceae;genus:Albugo;species:Albugo laibachii; 0.990913711 0.946486465 0.992560997 0.98634218 0.958870903 0.958784686 0.95665128 0.9485177 0.980799779 0.959498076 0.947219678 0.983221917 0.947559616 0.885013584 0.954476088 0.944462605 0.99784425 0.924569474 261281092 ara Geobacillus sp. Y412MC10 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 1.364164136 1.335269743 1.336539269 1.350559543 1.314872118 1.369920426 1.304203729 1.331486898 1.334912903 1.296906347 1.316643713 1.314831784 1.31730318 1.272450761 1.305127296 1.308979681 1.393637847 1.303358393 323376220 terc Acidovorax avenae subsp. avenae ATCC 19860 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax avenae; 1.255390996 1.209366579 1.196279582 1.240826449 1.228719427 1.214767946 1.220833954 1.237664823 1.195908867 1.210197382 1.209144107 1.240261818 1.15861811 1.160124707 1.130664362 1.191143369 1.190968376 1.150855678 323525193 xylj Burkholderia sp. CCGE1001 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 1.150791353 1.154432358 1.132830788 1.163988277 1.140409842 1.157396276 1.131931905 1.124274153 1.128403296 1.118149152 1.129794005 1.134996244 1.124319258 1.111009494 1.131542687 1.12702061 1.161809613 1.1230193 365421592 cellobiase Bradyrhizobium sp. STM 3843 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.947104229 0.90486359 0.931542209 0.90873113 0.8708932 0.866530984 0.880653689 0.885310898 0.933747796 0.9078343 0.884618619 0.909883622 0.889871421 0.888355759 0.893110232 0.849776491 0.952569743 0.944250822 329758713 acetylglucosaminidase Gluconacetobacter sp. SXCC-1 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter; 0.789466276 0.829363623 0.858821675 0.815003753 0.856030312 0.821190698 0.82495575 99036436 mer Silicibacter sp. TM1040 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 1.1590548 1.049980247 1.049531954 1.046491052 1.057380157 1.099323247 1.053624807 1.044168083 1.04295339 1.075856526 1.076957006 1.061087622 1.057531152 1.033274922 1.042772033 1.035907006 1.074824813 1.103207961 89885720 chitinase Vibrio proteolyticus Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 1.170577934 1.12347659 1.042820551 1.067332445 1.042218092 1.024420157 1.032426054 1.031909284 1.068382371 1.011764286 1.035437509 1.039300314 1.031603767 0.957775674 0.987732253 0.986629976 1.040085099 1.070121427 119416759 phenol_oxidase Funalia trogii Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Trametes; 1.133170657 1.145641837 1.06885947 1.154872138 1.113919519 1.09232344 1.097046526 1.105847595 1.088858185 1.105600851 1.089003255 1.112538049 1.082054721 1.070777551 1.061445687 1.10537315 1.14818608 1.124186999 391879481 amyA Parascardovia denticolens IPLA 20019 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Parascardovia;species:Parascardovia denticolens; 0.971170344 1.002992279 0.979278059 0.979007482 0.896608561 0.937970663 0.912631258 0.970840673 0.983936544 0.90702023 0.898070966 0.969688421 0.896268792 0.912014913 0.870085264 0.959808876 0.983739749 0.963796365 46519999 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.948174501 0.942801718 0.898971194 0.961305148 0.911434439 0.934591184 0.87331888 0.90741257 0.908332445 0.93438971 0.910542248 0.924079827 0.88389624 0.865812571 0.84258735 0.881663466 0.967325365 0.963667933 58582319 pme Xanthomonas oryzae pv. oryzae KACC 10331 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas oryzae; 0.842704629 0.894309489 0.843896763 0.850475692 0.817377042 0.85138015 0.839139862 0.840766869 238711220 cysJ Yersinia rohdei ATCC 43380 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia rohdei; 0.96904655 0.960810885 1.029957821 1.004967697 0.99868983 0.958113611 1.013495279 1.034053227 1.041485065 1.039484206 1.005061264 1.018782723 0.965604419 0.946176163 1.044160471 0.979581061 1.048702953 1.006533941 189438317 acetylglucosaminidase Bacteroides intestinalis DSM 17393 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides intestinalis; 0.844324898 0.838832017 0.820278306 0.867434447 0.838164185 0.842094682 0.858926502 0.827186346 0.919996404 0.856380102 0.905398529 0.84946116 0.867885817 0.846280052 0.878214269 0.837022984 0.83370708 52306400 norb Mannheimia succiniciproducens MBEL55E Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Basfia;species:Mannheimia succiniciproducens; 0.818939549 0.823501503 0.840811307 0.832427852 0.873208392 0.815036626 0.809918536 269835745 endochitinase Vibrio harveyi 1DA3 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio harveyi; 0.771576752 0.803359937 289522229 arsc Anaerobaculum hydrogeniformans ATCC BAA-1850 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Synergistetes;class:Synergistia;order:Synergistales;family:Synergistaceae;genus:Anaerobaculum;species:Anaerobaculum hydrogeniformans; 0.859070211 0.826202596 0.882515968 0.934244997 0.83753539 0.907990008 0.881206972 0.887880682 0.839106337 0.817699086 0.839942104 0.803307845 0.837031383 0.880712602 339883593 fthfs Actinomyces sp. oral taxon 448 str. F0400 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 448; 1.108590461 1.023653621 1.030669548 1.085878802 1.030274793 1.080968385 1.048090955 1.047630409 1.07453987 1.055579621 1.103139269 1.066939143 1.062415021 1.002912727 1.000596546 1.02384188 1.081852935 1.025040417 354581042 terc Paenibacillus lactis 154 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus lactis; 0.804153444 0.841702912 0.854045318 0.832685804 0.826188442 0.813192812 306921898 dsra uncultured bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.009251059 1.01073812 1.000274648 0.970608537 0.955287301 1.025877235 0.988876558 1.001477147 0.962637999 0.984536236 0.951845426 0.998768183 0.979130144 0.923317971 0.910359222 0.930506951 0.992819459 0.990318964 164455326 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 1.084270462 0.916066692 1.010554015 0.985456924 0.974485783 1.113980947 1.01756931 1.021561498 1.02246662 1.09895124 0.99050921 0.961283017 1.04978167 1.079036429 1.020804068 1.014906627 1.030460917 1.03562381 88780140 PRI Reinekea sp. MED297 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Reinekea;species:Reinekea blandensis; 0.776179121 0.801093376 0.822814543 0.82431721 3413804 cox1_Viridiplantae Chlorogonium elongatum Other Phylogenetic NA superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Chlorophyceae;order:Chlamydomonadales;family:Haematococcaceae;genus:Chlorogonium; 1.166702553 1.129897877 1.117645634 1.191662115 1.144065731 1.170018965 1.174888542 1.145960334 1.173672665 1.13604558 1.156785193 1.171003295 1.139132331 1.082045199 1.066279875 1.109339517 1.126679926 1.112760627 184204571 xyla bacterium Ellin514 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobia subdivision 3;genus:Pedosphaera;species:Pedosphaera parvula; 1.160943794 1.140746742 1.11408021 1.187736356 1.162222484 1.111542135 1.135661495 1.1485956 1.171391007 1.123562814 1.114481067 1.196246716 1.118818517 1.119270172 1.085923685 1.126554334 1.139112498 1.104699022 110638988 amyA Cytophaga hutchinsonii ATCC 33406 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Cytophaga;species:Cytophaga hutchinsonii; 0.805396413 0.800222694 0.843142184 0.821697244 0.821772944 0.808107501 0.788620082 0.80706264 0.810082009 238696735 trze Yersinia kristensenii ATCC 33638 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia kristensenii; 0.937021981 0.950982715 1.002779134 0.926851781 0.884645434 0.949670431 0.891015997 0.948056498 0.959356917 0.950411319 0.949325088 0.940810893 0.892309321 0.973702852 0.89046904 0.911188008 0.961200721 0.988015716 83950885 alkb Roseovarius nubinhibens ISM Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius;species:Roseovarius nubinhibens; 0.892854091 0.904079225 0.876876119 0.918770746 0.880835601 0.890485166 0.860495406 0.912702163 0.918015782 0.888934232 0.869454915 0.919290571 0.831557341 0.875710084 0.817204965 0.877609534 0.942254843 0.931578079 302383695 fthfs Brevundimonas subvibrioides ATCC 15264 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Brevundimonas;species:Brevundimonas subvibrioides; 1.067206192 0.989943988 0.962496325 1.015215047 0.985985398 0.993707519 0.943368434 0.967846171 1.006519205 0.975392677 0.929470119 0.919288376 0.952998033 0.920863646 0.896631158 0.963025822 1.003832129 0.997817547 66801829 narg unidentified bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.989222842 0.943043265 0.971569443 1.009636081 0.93744698 0.939171665 0.925517415 0.883435609 0.999756433 0.964994405 0.93956863 0.942022319 0.890213467 0.904901496 0.861263799 0.903762391 0.974533985 0.94741921 166857739 sdsa Pseudomonas putida GB-1 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 1.145322694 1.13464641 1.109321234 1.156728314 1.098407938 1.125360427 1.068918209 1.121718507 1.136488529 1.106800958 1.109849031 1.115896655 1.066783157 1.114857852 1.043108287 1.070399718 1.14638558 1.122136106 69151647 alkb Paracoccus denitrificans PD1222 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 1.079744097 1.100794799 1.127275599 1.130675713 1.113152019 1.144156679 1.128636452 1.105089718 1.08886846 1.138745226 1.144252123 1.152287331 1.072071037 1.106675079 1.019890817 1.115580884 1.074107868 1.119637257 347758077 TIM Micavibrio aeruginosavorus ARL-13 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;genus:Micavibrio;species:Micavibrio aeruginosavorus; 0.906204566 0.855303804 0.890941682 0.890301519 0.85149149 0.887027642 0.862801067 0.859401154 0.885703809 0.854915649 0.846683234 0.870890649 0.838083753 0.827821347 0.799619041 0.83627646 0.882394414 0.870059123 6682326 poba Pseudomonas putida Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.87677563 0.817169065 0.83051211 0.803491613 0.862415803 0.812078482 225047514 chitinase Clostridium asparagiforme DSM 15981 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium asparagiforme; 0.879185237 0.929330727 0.89281921 0.906667953 0.941825592 0.893323317 0.881410031 0.862860415 0.895797333 0.945088523 0.88268832 0.937371462 0.933746585 0.924798188 0.947710403 0.864051984 0.941617055 0.921818327 188583364 SoxA Methylobacterium populi BJ001 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium populi; 0.913872688 0.883995293 0.866192453 0.899439005 0.849761708 0.909636677 0.880246066 0.877954646 0.822407041 0.839800437 0.893583386 0.862712274 0.937875904 0.890989795 373499691 pula Prevotella micans F0438 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella micans; 0.817531977 0.838464036 0.780831398 0.830159462 0.820753062 0.812473162 0.82550651 0.856204802 115525078 SoxC Rhodopseudomonas palustris BisA53 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 0.843896651 0.877550442 0.80517578 0.78908842 0.825353574 0.859261343 0.815864074 0.81455083 0.818399429 0.798184699 0.865753315 0.900860516 0.815622696 0.818326263 260861816 linc Selenomonas sputigena ATCC 35185 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas sputigena; 0.855101054 0.921831272 0.959855319 0.894797449 0.906783706 0.951991722 0.829978444 0.8261211 0.902049049 0.859025116 0.895434742 0.884779022 0.824779109 0.813415036 0.893913555 0.861550797 337733913 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 1.26639177 1.206520824 1.195903662 1.239358305 1.163056672 1.214716334 1.161538251 1.207654173 1.292340355 1.192180544 1.17146068 1.221904109 1.149541386 1.178776295 1.188538063 1.17090458 1.230744473 1.228273197 119962058 urec Arthrobacter aurescens TC1 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter aurescens; 0.974388507 0.940599997 0.993254012 1.012469797 0.914435864 0.97309499 0.894799389 0.931310966 0.987417535 0.978227041 0.938649775 0.924930805 0.853111641 0.941300333 0.892909298 0.920271306 1.001955336 0.973568299 119179009 phospholipase_B_fungi Coccidioides immitis RS virulence degradation NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;genus:Coccidioides;species:Coccidioides immitis; 0.816822233 0.851299613 0.821558825 0.828347743 0.823858725 0.817632188 0.797747958 0.820978606 0.883980694 365904644 ccmL Lactobacillus versmoldensis KCTC 3814 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus versmoldensis; 0.880663953 0.866411792 0.858296831 0.938673341 0.913168445 0.841823865 0.840198032 0.875394788 0.882942837 0.866619558 0.909917353 0.965079656 0.836368463 0.840394091 0.84753921 0.870421523 0.870081366 62001498 pectinase (pectate_lyase) Pseudomonas viridiflava Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 1.271656588 1.281863737 1.275411325 1.298662787 1.296936851 1.31100751 1.27898052 1.332722692 1.310367828 1.34198642 1.280498782 1.330418556 1.271118314 1.284070441 1.259149792 1.29416526 1.277370501 1.31929169 302847243 nitrate_reductase Volvox carteri f. nagariensis Nitrogen N Assimilation NA superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Chlorophyceae;order:Chlamydomonadales;family:Volvocaceae;genus:Volvox;species:Volvox carteri; 0.811548019 0.839066521 0.820378448 0.790364403 335038651 nhh Caldalkalibacillus thermarum TA2.A1 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Caldalkalibacillus;species:Caldalkalibacillus thermarum; 1.008156241 0.945463928 0.960768273 1.035274517 1.009027632 0.996204352 0.989792077 1.026061539 1.018913481 0.98538354 0.936291685 1.021641188 0.942009072 0.947524316 0.914848153 0.943877814 0.993720089 0.995600998 323135576 GAPDH_Calvin Methylocystis sp. ATCC 49242 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylocystaceae;genus:Methylocystis; 0.960829977 1.018494719 0.996090114 0.923102031 0.977412947 0.964730367 0.869442692 0.881451784 0.930253027 0.935740062 0.93280828 0.890020305 0.918059146 0.894784445 0.907418706 0.916555978 1.009745271 0.977055306 320105503 alginase Terriglobus saanensis SP1PR4 Carbon Cycling Carbon degradation Alginate superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Terriglobus;species:Terriglobus saanensis; 1.140484482 1.119720137 1.115089325 1.096240945 1.049047252 1.104787768 1.038150947 1.092492978 1.121985996 1.069835793 1.068398573 1.093703736 1.053012088 1.063885061 1.010454087 1.054512362 1.127397159 1.106135702 339611125 fthfs Prevotella dentalis DSM 3688 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella dentalis; 0.95920578 0.980024624 0.989787246 1.007790167 0.979985862 1.000602924 0.974530051 0.974887886 0.986479017 0.984401867 0.983173884 0.980094888 0.952807946 0.914399832 0.914047635 0.919162378 1.011759358 1.000182231 336399736 nrfa Prevotella multisaccharivorax DSM 17128 Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella multisaccharivorax; 1.183012779 1.190905025 1.133419747 1.168129323 1.139918166 1.180653217 1.111054454 1.105456881 1.113017433 1.142466902 1.116911015 1.137982101 1.116017049 1.130461478 1.104974473 1.139492434 1.169586283 1.168601084 31088842 phenol_oxidase Ceriporiopsis subvermispora Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Gelatoporia; 0.830765316 0.873458212 0.913205662 0.924516651 0.938779444 0.914185254 0.943327775 0.952562722 0.91354985 0.944543316 0.946904931 0.919111063 0.863361593 0.868175934 0.873093321 0.858617791 0.917508988 0.904866484 269101991 arsc Photobacterium damselae subsp. damselae CIP 102761 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium damselae; 0.812847837 0.822083976 111152228 cysJ Frankia alni ACN14a Sulfur Reduction NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia;species:Frankia alni; 1.12074215 1.119153464 1.143207114 1.153531081 1.115865349 1.164031173 1.122251218 1.127495308 1.138726485 1.093903158 1.104919636 1.104670568 1.095505541 1.080665128 1.06259376 1.067583046 1.128443084 1.091188542 296165056 arsc Mycobacterium parascrofulaceum ATCC BAA-614 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium parascrofulaceum; 1.059642841 1.019405259 1.043764828 1.045039498 0.985608914 1.029450231 0.945095439 1.013631949 1.028891683 1.003091052 1.011048152 1.018918086 0.994895185 0.998010156 0.980188084 0.992555699 1.060052479 0.997048109 325533328 mer Nitrosomonas sp. AL212 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas; 0.896328702 0.852933037 0.871569912 0.867899518 0.903788043 0.849980861 0.841509735 0.812117367 0.862095023 0.809709925 0.844772962 0.827039074 0.829624823 0.81296391 0.821152822 0.838277868 0.919269023 0.859609668 90336061 FBP_aldolase Aurantimonas manganoxydans SI85-9A1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Aurantimonas;species:Aurantimonas manganoxydans; 0.873163131 0.882444466 0.850164205 0.892914327 0.802047241 0.884925048 0.881257206 0.863330835 0.886566594 0.818319197 0.794124349 0.88157213 0.866603798 0.886567023 345135785 amyA Sphingobium sp. SYK-6 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium; 1.436460253 1.427884471 1.42809516 1.436902825 1.418057687 1.443814397 1.426254361 1.458049038 1.418360521 1.403559645 1.419018649 1.444952307 1.393753238 1.403433015 1.430788498 1.426230275 1.402784307 1.38573504 326952775 mdla Pseudonocardia dioxanivorans CB1190 Organic Remediation Aromatics Aromatic alpha hydroxy acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Pseudonocardia;species:Pseudonocardia dioxanivorans; 1.319845979 1.302876322 1.299797951 1.340953543 1.288040367 1.329156874 1.312127606 1.304843682 1.304581214 1.262663559 1.260540814 1.29922455 1.287164248 1.241673379 1.228659614 1.298306683 1.317485668 1.289374102 45444767 tfda uncultured soil bacterium Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria; 0.799062447 0.820576903 0.815550233 0.816784786 0.824233791 0.794491043 0.810993481 0.820725101 157939871 protease_serine_fungi Fusarium sp. BLB-2006a Carbon Cycling Carbon degradation protein superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;genus:Fusarium; 0.90220692 0.89857021 0.81704023 0.82385288 0.81440256 0.82126592 0.807321849 0.816695931 0.86965362 0.829743739 139478301 mer uncultured soil bacterium Metal Homeostasis Mercury Detoxification superkingdom:Bacteria; 1.036055897 0.976667033 0.976467789 1.003398082 0.973270372 0.986695396 0.96126398 0.957608463 0.972050753 0.969925853 0.948062345 0.952873518 0.9631767 0.95929498 0.909311783 0.929315093 1.010760285 0.971800949 118166205 cutinase Mycobacterium avium 104 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 1.098227506 1.102268817 1.120068545 1.11643766 1.102914037 1.121467112 1.088644749 1.070471086 1.093015615 1.11206545 1.108518127 1.136750769 1.068822716 1.050883673 1.033974649 1.095084229 1.106126092 1.067438313 262316288 FBPase Acinetobacter johnsonii SH046 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter johnsonii; 1.038863725 1.005691729 0.941669281 0.983512878 1.056652029 1.023488385 1.043171321 0.972738391 0.974346729 0.98395999 0.879703198 0.969607339 1.014945701 0.932781888 1.017091134 1.025942028 1.000622717 1.028300614 319750826 linb Isosphaera pallida ATCC 43644 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Isosphaera;species:Isosphaera pallida; 0.954393 0.901350117 0.844548478 0.863406189 0.90506454 0.852483918 0.895080398 0.831991733 0.895922987 0.94917263 0.901744268 0.969475868 0.919840906 0.895108802 0.890609093 0.921660918 0.859500487 0.926022078 148838659 pula Vibrio shilonii AK1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio shilonii; 0.866068611 0.905682821 0.881240399 0.886284149 0.828398193 0.814413438 0.826413656 0.87653782 0.896951786 0.836057118 0.829158643 0.867404717 0.810552569 0.824963702 0.832270536 0.823185354 0.898930701 0.881764474 86751473 soxY Rhodopseudomonas palustris HaA2 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 1.366539906 1.349201145 1.331421184 1.319141159 1.341773031 1.38726898 1.336923855 1.333984078 1.306729654 1.320577963 1.340550826 1.323561199 1.335988049 1.306284721 1.297766357 1.319792252 1.336892541 1.337329638 78169675 GAPDH_Calvin Synechococcus sp. CC9902 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 0.921054652 0.86449959 0.845178066 0.872244344 0.866432739 0.796952491 0.924108091 0.878324271 0.85480043 0.867236201 0.836397375 0.889274454 0.808895299 0.890045273 0.834092415 83311938 ppx Magnetospirillum magneticum AMB-1 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum magneticum; 1.280901193 1.296597803 1.275672989 1.266410897 1.279477812 1.330894474 1.272380738 1.26540818 1.264895272 1.261172682 1.287294763 1.274104105 1.255999799 1.217077676 1.193482167 1.277448848 1.312780927 1.272189257 148750449 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.080174523 0.993204039 1.028564695 1.043830766 1.039524448 1.109969038 1.016107352 0.990758657 1.025975722 1.065172695 1.115234456 1.057230261 1.027774332 1.004724028 1.109997014 0.986256723 1.112986294 1.001264257 49647296 phospholipase_C_fungi Yarrowia lipolytica Carbon Cycling Carbon degradation Phospholipids superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Dipodascaceae;genus:Yarrowia; 0.885922271 0.892232618 0.837514113 0.873460747 0.879809677 0.923207737 0.901999522 0.821016759 0.833247059 0.832192895 0.864450075 0.868872035 0.832158874 0.864165551 0.834726197 0.846160674 0.879747755 0.922887115 400535949 nbzb Mycobacterium colombiense CECT 3035 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium colombiense; 1.297400029 1.283860786 1.277096431 1.314629208 1.306069118 1.310233397 1.317756258 1.335494432 1.295040512 1.265939717 1.270554607 1.315299545 1.280280604 1.237746669 1.303345813 1.310704654 1.281128808 1.23329933 14276800 dsrB Desulfotomaculum geothermicum Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum; 0.851667257 0.870563132 0.822691878 0.83680533 0.797995872 0.808017426 0.830291101 0.816006175 0.815707963 0.830276034 0.86830424 337276624 chitinase Acetonema longum DSM 6540 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Acetonema;species:Acetonema longum; 1.047057512 1.042269287 1.013490941 1.03385331 1.026971842 1.039620723 1.019709646 1.000321358 0.993868057 1.008667731 1.033452522 1.042840487 1.045069434 0.972897403 0.999293231 1.027134691 1.031685451 1.002837366 256724239 lactase_fungi Nectria haematococca mpVI 77-13-4 Carbon Cycling Carbon degradation Lactose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Fusarium;species:Nectria haematococca; 0.822139391 0.80843621 0.88649842 0.779114533 255021042 ccmL Acidithiobacillus caldus ATCC 51756 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus caldus; 1.093117703 1.077007153 1.07765746 1.081092916 1.081590553 1.063528974 1.041473885 1.034918689 1.10570245 1.06144224 1.048407534 1.044587937 1.030465765 1.040090909 1.011917536 1.027558841 1.108850687 1.107754706 269794162 acetylglucosaminidase Sanguibacter keddieii DSM 10542 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Sanguibacteraceae;genus:Sanguibacter;species:Sanguibacter keddieii; 0.939079491 0.881355851 0.910152848 0.854521395 0.932581947 0.924799666 0.852652811 0.816437874 0.857245605 0.848391699 0.835925501 0.819429031 0.864763069 0.857512631 0.813671782 0.931081629 0.923315772 86605259 FBPase Synechococcus sp. JA-3-3Ab Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 0.907991562 0.871167674 0.867914884 0.902464873 0.890505546 0.951797086 0.899484534 0.863816165 0.882326832 0.914861149 0.848342289 0.855199967 0.915778282 0.870600035 0.844181069 0.842517086 0.928052738 0.904623218 146405306 xamo Bradyrhizobium sp. BTAi1 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.857661833 0.887841863 0.845765161 0.813074969 0.824234587 0.848114372 0.835621617 0.859213357 0.86711764 0.82586278 0.842242526 0.792669147 0.856182427 0.852039439 0.817253097 0.887322336 0.8947539 383766415 glucoamylase Phycisphaera mikurensis NBRC 102666 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Planctomycetes;class:Phycisphaerae;order:Phycisphaerales;family:Phycisphaeraceae;genus:Phycisphaera;species:Phycisphaera mikurensis; 1.066693239 1.070878455 1.000759772 1.090010375 1.006697512 1.035088143 1.028228556 1.028740628 1.03882331 1.043293105 1.008642701 1.030462394 0.988264779 0.987315198 0.94192878 0.994653244 1.052974709 1.058587804 97954617 nirk Pseudomonas sp. R-26828 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.82310319 0.943764051 0.825985329 0.890046582 0.87883688 0.927582658 0.82148647 0.830398234 0.945925979 0.892205336 0.928756706 0.855955737 0.883906824 0.842266968 0.883897156 0.854693125 0.929913425 344317771 amyA Streptomyces sp. SirexAA-E Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 0.94314976 0.951350924 0.898193393 0.975303376 0.905467302 0.979362172 0.875696956 0.914828242 0.934902716 0.940727301 0.919355421 0.941146502 0.890070498 0.897330423 0.888725509 0.91998117 1.011906159 1.009199806 377568850 cellobiase Gordonia terrae NBRC 100016 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia terrae; 1.053816882 1.015782142 1.052872029 1.05610499 0.930652245 1.028150284 0.968438991 0.983501725 1.044616054 0.971538692 0.991868435 0.98466736 0.987237251 0.953621906 0.954439292 0.967047376 1.034608427 1.016532845 77655372 arsc Rhodopseudomonas palustris BisB5 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 0.803854085 0.831701674 222438772 ppx Labrenzia alexandrii DFL-11 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia alexandrii; 0.833143551 0.796007138 0.8349283 0.809821135 0.840618577 0.825594027 0.830340123 0.811833565 0.837659342 0.854511211 0.883898857 303315089 endochitinase Coccidioides posadasii C735 delta SOWgp Carbon Cycling Carbon degradation Chitin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;genus:Coccidioides;species:Coccidioides posadasii; 0.863446672 0.803123844 0.804274056 0.85096432 0.79878166 0.812467929 294883886 aoxb Bradyrhizobium sp. S452 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 1.024854138 0.989824206 1.074631952 1.074016939 1.125506602 1.082568597 1.14363827 1.047445047 1.039928502 1.102507725 1.128171199 1.077086429 1.103414533 1.026113317 1.045314548 1.042318459 1.03944538 0.9942674 222475776 mer Halorubrum lacusprofundi ATCC 49239 Metal Homeostasis Mercury Detoxification superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halorubrum;species:Halorubrum lacusprofundi; 0.774868592 0.811540407 0.779558941 0.809774555 0.815754199 156534144 ppx Cronobacter sakazakii ATCC BAA-894 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Cronobacter;species:Cronobacter sakazakii; 1.035242016 1.045622995 1.029114028 1.042633777 1.044982329 1.054291599 1.007585248 0.99110229 1.039004499 1.056175898 1.029687951 1.056462456 0.996323609 1.008344509 0.928729307 1.002544085 1.053730567 1.03542222 87281113 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.93613329 0.932010921 0.94215714 0.940816731 0.956924564 0.951106425 0.922216763 0.970980912 0.918807015 0.936890338 0.941898888 0.938209412 0.934024032 0.930223792 0.875364042 0.917621091 0.920590266 0.967266768 66801899 narg unidentified bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.885766816 0.923069584 0.876732923 0.876342288 0.910585077 0.915330095 0.914969724 0.892517238 0.890900617 0.87982576 0.898756847 0.884352988 0.838503616 0.864259031 0.816847821 0.862160516 0.911882785 0.925046573 224600877 amyA Pseudogulbenkiania ferrooxidans 2002 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Pseudogulbenkiania;species:Pseudogulbenkiania ferrooxidans; 0.966253182 0.951473933 0.951495357 0.979312046 0.943414481 0.942490937 0.939648026 0.964760419 0.934003347 0.939943332 0.935841596 0.964364179 0.918438944 0.945045446 0.891164218 0.915651639 0.949038165 0.947756204 29605977 cysJ Streptomyces avermitilis MA-4680 Sulfur Reduction NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 0.871323718 0.881605125 0.875409615 0.870754733 0.833436927 0.846328866 0.85219737 0.825172415 0.820091076 0.826445278 0.8713979 0.901803748 302404006 axe Verticillium albo-atrum VaMs.102 Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticillium;species:Verticillium alfalfae; 1.205209906 1.140457745 1.128986073 1.181356979 1.128386321 1.19659398 1.146405924 1.117745472 1.166705866 1.16100096 1.159359333 1.14530303 1.125758711 1.165753381 1.085277693 1.136711633 1.183217623 1.123669069 393172368 amyA Rhizobium leguminosarum bv. trifolii WSM2012 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 0.991824163 1.063138411 1.022966971 1.00526784 0.999610225 1.024333663 0.991140666 0.995465895 0.972647714 0.978450119 0.963815865 0.996399711 0.982683749 0.944823099 0.942694866 0.949715868 1.028948016 1.047776876 390435018 phn Pantoea agglomerans IG1 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea;species:Pantoea agglomerans; 0.876896881 0.914078544 0.85596351 0.868745531 0.805642364 0.818571364 0.823907854 0.844873721 0.830723161 0.823202801 0.823509941 0.820977822 0.830196062 0.869792563 209966260 arsc Rhodospirillum centenum SW Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum centenum; 0.971236398 0.915800719 0.962042867 0.964602304 0.9037922 0.926630566 0.934267359 0.924444217 0.919689146 0.968306035 0.94425942 0.962653092 0.892912564 0.895336959 0.869701543 0.889509891 0.901536532 0.870566994 333022724 xylanase Streptomyces sp. Tu6071 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 1.365710993 1.320788217 1.345888371 1.372626834 1.361497585 1.362016979 1.363798385 1.397170935 1.352228061 1.313955652 1.339204321 1.376459107 1.340108545 1.301687429 1.335125506 1.355932833 1.340212421 1.300080312 285026987 tfda uncultured bacterium Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria; 1.150879805 1.125487755 1.092048974 1.104695172 1.064585354 1.109089474 1.042361058 1.112255301 1.095114754 1.072945423 1.038639626 1.069355569 1.043843292 1.047931196 1.044412455 1.082685174 1.107547091 1.044127884 116072921 TIM Synechococcus sp. RS9916 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 0.965046997 0.927498638 0.907064097 0.902920396 0.901444628 0.889301121 0.845167943 0.908451394 0.815016537 0.937291191 0.894236198 0.857798652 0.864820392 0.860630734 0.901959477 0.947111921 261359301 pec_Cdeg Verticillium albo-atrum VaMs.102 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticillium;species:Verticillium alfalfae; 1.052674855 1.064500712 1.049085374 1.050007146 1.065116205 1.065218363 1.045157039 1.054198812 1.020221988 1.073372928 1.033622288 1.025293233 1.087024885 1.067567406 1.078509068 1.050672811 1.059523526 1.068977895 218564186 phenol_oxidase uncultured fungus Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi; 0.854966189 0.822978557 0.820681639 0.898790132 0.851356247 0.827143972 0.85231468 0.817812345 0.847914514 0.902543548 0.866024787 66474871 cmua uncultured bacterium Organic Remediation Chlorinated solvents NA superkingdom:Bacteria; 1.094254397 1.116203066 1.058293334 1.130106343 1.060340666 1.110273055 1.049916693 1.078745457 1.043244542 1.079117507 1.099903522 1.117444518 1.058549205 1.063989202 1.006936152 1.12488509 1.096017254 1.094303606 340788429 nbac Collimonas fungivorans Ter331 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Collimonas;species:Collimonas fungivorans; 1.048290966 0.926704783 1.038126305 0.997608256 0.951792983 0.918575067 0.919987339 0.984250175 0.964371821 0.918148612 0.924848728 0.987914656 0.889800049 0.856435936 0.887196122 0.892380886 0.969305597 0.948701331 383821387 tfda Mycobacterium phlei RIVM601174 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium phlei; 0.813600415 0.821566734 0.793010159 0.815096317 0.812055927 0.854691857 0.792585187 0.822969893 0.787162981 159044821 dmsa Dinoroseobacter shibae DFL 12 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 1.024352663 1.029125884 0.958034592 0.976454789 0.987139763 0.968599591 0.940247746 0.963659609 0.98622582 0.917564755 0.936254687 0.964744649 0.973526 0.910389499 0.943397814 0.900756621 1.004680664 0.979143434 373854095 ccmL Opitutaceae bacterium TAV5 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 1.082419582 1.051549812 1.034334152 1.043332454 1.016928425 1.063534284 1.023973313 1.022428368 1.045786878 1.06251109 1.02135986 1.048211963 0.987610877 1.011050217 0.956096373 0.991952113 1.055037539 1.067035424 330809720 catechol Pseudomonas brassicacearum subsp. brassicacearum NFM421 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas brassicacearum; 0.82338238 0.889193467 0.827704721 0.775136766 0.852980608 0.908537912 0.902006218 0.838563416 0.851429261 0.843619714 0.827389923 0.834415808 0.869530171 0.911886352 0.890522898 302867449 endoglucanase Micromonospora aurantiaca ATCC 27029 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Micromonospora;species:Micromonospora aurantiaca; 0.928979774 0.85141356 0.868594273 0.84903355 0.924612128 0.960508893 0.967520447 0.941278035 0.883879708 0.974625922 0.855789835 0.935975136 0.89437797 0.838432849 0.787828547 0.918414005 0.906627198 0.913097901 55231410 glucoamylase Haloarcula marismortui ATCC 43049 Carbon Cycling Carbon degradation Starch superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloarcula;species:Haloarcula marismortui; 0.814711385 0.789986421 358242503 vana Gordonia araii NBRC 100433 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia araii; 0.822581701 0.909510224 0.810995136 0.8928725 0.91210192 0.883164121 0.849438992 0.87605477 0.897178752 0.90150142 0.862117975 0.900817158 0.888357137 0.867165646 0.842232815 0.8879602 0.872599381 0.909169285 319742170 amyA Lautropia mirabilis ATCC 51599 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Lautropia;species:Lautropia mirabilis; 0.901598607 0.891633756 0.864070517 0.885401115 0.867278541 0.842610659 0.828364908 0.863549377 0.868618291 0.804769457 0.833548033 0.8109842 0.899085012 0.928595656 317400663 Sir Neisseria mucosa C102 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria mucosa; 1.415905179 1.411659447 1.341851246 1.361825022 1.324812738 1.391003171 1.320514286 1.339557348 1.359656137 1.368633753 1.351090929 1.330345208 1.306876774 1.32735579 1.301814358 1.325827893 1.374868475 1.377426428 302869388 xylj Micromonospora aurantiaca ATCC 27029 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Micromonospora;species:Micromonospora aurantiaca; 0.955504313 1.081911128 0.948908145 1.024689439 0.983767859 1.018210084 0.95735407 0.935587946 0.959260235 0.997723271 0.964549668 0.964965632 0.967152202 0.953561475 0.940288169 0.985244623 0.986555679 0.998636864 262045459 terc Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 0.80578824 0.80573028 0.847226311 0.798667991 117607501 frdA_rTCA Magnetococcus sp. MC-1 Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Magnetococcales;family:Magnetococcaceae;genus:Magnetococcus;species:Magnetococcus marinus; 1.000263473 0.937631079 0.924634119 0.934733204 0.905378033 0.988906149 0.956518377 0.931364077 0.912014758 0.941249785 0.890396216 0.949913775 0.887183626 0.903172827 0.865747438 0.907840866 0.973453876 0.955422914 118579219 terc Pelobacter propionicus DSM 2379 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Pelobacteraceae;genus:Pelobacter;species:Pelobacter propionicus; 0.77891572 0.779899413 0.816593361 0.835648124 0.814854021 0.867054157 0.827844354 0.820229305 84515566 GAPDH_Calvin Loktanella vestfoldensis SKA53 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Loktanella;species:Loktanella vestfoldensis; 0.891148466 0.889874997 0.857201986 0.884763184 0.8713236 0.928501691 0.92707115 0.883801985 0.872869654 0.860943754 0.84292712 0.888718105 0.789872258 0.868436101 0.842696915 0.909969829 0.939363072 206684172 catb Rhodobacterales bacterium Y4I Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 1.393028825 1.369631072 1.346319742 1.359309489 1.32059403 1.374498958 1.321050477 1.338630802 1.351573615 1.343563617 1.325534878 1.347593667 1.313702368 1.315688931 1.304904771 1.313158664 1.375158217 1.36118525 239517082 ccmL Clostridiales bacterium 1_7_47FAA Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales; 0.826344852 0.824142487 0.813785379 0.827711352 0.823567038 0.827952358 66801875 narg unidentified bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.08925527 1.084100699 1.037928 1.085962845 1.069595948 1.07910655 1.03197674 1.05707659 1.059103448 1.047070007 1.046680936 1.082799061 1.074738967 1.035758595 1.029991403 1.05838775 1.09342838 1.055438459 221168209 pcpe Burkholderia multivorans CGD1 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 0.890552165 0.891954644 0.878233115 0.874036484 0.833962738 0.865828117 0.87917484 0.877684067 0.862992762 0.896267554 0.813786038 0.849358954 0.816895775 0.818887526 0.813262848 0.840374353 0.851750856 0.874717712 228894261 amyA Cellulomonas flavigena DSM 20109 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas;species:Cellulomonas flavigena; 1.363829893 1.368967971 1.346082362 1.348132944 1.361877786 1.379545186 1.339985044 1.36619788 1.332469853 1.342029174 1.35179375 1.36506305 1.345406288 1.317659987 1.378454351 1.363303761 1.355436728 1.337251461 326951594 catb Pseudonocardia dioxanivorans CB1190 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Pseudonocardia;species:Pseudonocardia dioxanivorans; 1.409095042 1.381779264 1.334236834 1.366365962 1.327625367 1.391796138 1.323786517 1.322728214 1.342469036 1.330397254 1.356291825 1.341675002 1.328050545 1.322092725 1.304150242 1.312431761 1.383510669 1.332754981 151938418 tehb Vibrio sp. Ex25 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 0.955527275 0.967708599 0.983009902 0.976995966 1.053180558 0.985057047 1.0265127 0.998009797 1.017943036 1.034544972 1.023736275 1.029941819 0.981070405 0.978418839 0.979673614 1.023108313 1.024693771 1.083464131 290511101 cysJ Klebsiella sp. 1_1_55 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella; 0.961836356 0.932318909 0.859683973 0.89931692 0.884538038 0.838807789 0.848404282 0.857859322 0.91002367 0.947133574 0.883703595 0.90814147 0.8095465 0.841313797 0.844395464 0.899109914 0.945487529 91200182 hao Candidatus Kuenenia stuttgartiensis Nitrogen Nitrification NA superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;genus:Candidatus Kuenenia; 0.889676422 0.825888674 0.786566614 0.815351401 0.838189787 0.862145941 0.822148575 70993144 cutinase Aspergillus fumigatus Af293 Carbon Cycling Carbon degradation Cutin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Aspergillus fumigatus; 1.243974411 1.249238513 1.216041022 1.20920694 1.218320872 1.22497862 1.213755602 1.223978244 1.213822741 1.219345279 1.192942491 1.239566154 1.189185698 1.218075226 1.203611873 1.214343953 1.220599833 1.229431552 379990461 dsrB uncultured bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.799198963 0.81268517 0.807818924 0.80145934 377527295 urec Gordonia sputi NBRC 100414 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia sputi; 0.839384763 0.83454912 0.825376943 0.832459092 0.829967755 0.799894332 0.829656271 0.845477727 0.861049301 0.80667531 0.807857964 0.836587226 0.843368845 192897572 ppk uncultured bacterium Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria; 0.923271789 0.92362446 0.954324492 0.992396305 0.938336353 0.91068474 0.924612872 0.925612706 0.931964548 0.870288898 0.883322887 0.887461528 0.911970886 0.865502298 0.881726421 0.902217369 0.964265099 0.912748892 302555788 xylc Streptomyces viridochromogenes DSM 40736 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces viridochromogenes; 1.248858955 1.219059957 300712555 atza Halalkalicoccus jeotgali B3 Organic Remediation Herbicides related compound NA superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halalkalicoccus;species:Halalkalicoccus jeotgali; 0.930734353 0.943508175 0.890337701 0.93652907 0.963673127 0.946653621 0.936951912 0.901797676 0.940297489 0.960078797 1.067183609 0.969449426 0.952223609 0.937914379 0.911719732 0.917615221 0.907612397 0.926574197 359401893 mer Novosphingobium pentaromativorans US6-1 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium pentaromativorans; 1.028231751 0.994579122 1.01956344 1.026923651 1.028998718 1.007678569 0.978768277 1.002000284 0.986607139 0.971144319 0.986161399 1.008916427 1.020520783 0.960332973 1.014861568 0.992663839 1.04604581 1.046231903 343802384 arsm Thiocapsa marina 5811 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiocapsa;species:Thiocapsa marina; 1.070527584 1.102525551 1.090790385 1.100502431 1.100183437 1.101829244 1.070430724 1.098614227 1.064591862 1.071648795 1.07523185 1.100686461 1.0860103 1.080364803 1.084403354 1.070229139 1.09608423 1.079276789 256681301 xylg Pseudomonas aeruginosa Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 1.33742642 1.31388469 1.295937014 1.304937235 1.287704184 1.318662027 1.28240995 1.320386346 1.29540419 1.304615274 1.289168245 1.30091573 1.284590331 1.280653522 1.280137115 1.284680769 1.321676786 1.321113458 147886058 phenol_oxidase uncultured bacterium Carbon Cycling Carbon degradation Lignin superkingdom:Bacteria; 0.824995336 0.876720247 0.846401715 0.806522636 0.815793617 0.850241129 219946231 nagg Methylobacterium nodulans ORS 2060 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 0.883012227 0.958584345 0.88020736 0.956065526 0.909247319 0.940662656 0.839675113 0.867254584 0.898007851 0.922058045 0.859422374 0.881013328 0.909075991 0.828865755 0.854897863 0.880574832 0.926160961 0.916740918 357975266 camdcab Sphingomonas sp. KC8 Carbon Cycling Carbon degradation Camphor superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 1.103768357 1.03027511 1.079196186 1.130398012 1.007181575 1.062885625 1.020638476 1.057274933 1.07845032 1.052264289 1.040548027 1.043220784 1.00415124 1.062069926 1.011644436 1.03270552 1.0998898 1.04546382 296844347 rgl Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Nocardiopsis;species:Nocardiopsis dassonvillei; 1.129129517 1.103351099 1.097816298 1.129350685 1.119228144 1.121421732 1.072020921 1.090480155 1.124526515 1.118744469 1.109497077 1.10408285 1.102707368 1.11170226 1.09278898 1.100595145 1.116804734 1.131968144 349583571 phenol_oxidase uncultured bacterium Carbon Cycling Carbon degradation Lignin superkingdom:Bacteria; 0.961566276 0.984396005 0.956862029 0.939062182 0.963266327 1.007516605 0.984471119 1.013790102 0.973888224 0.979505866 1.043706807 0.947375419 0.946216362 0.988498498 0.947424006 1.068532882 1.065031599 0.987568434 325952302 amyA Nocardioidaceae bacterium Broad-1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae; 1.19440965 1.15834303 1.129734528 1.166000823 1.132230322 1.095244436 1.160288899 1.152189134 1.158240828 1.105840363 1.133565046 1.182399042 1.099071949 1.095330978 1.087846957 1.107374865 1.126959285 1.097380487 151562937 pcag Ochrobactrum anthropi ATCC 49188 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum anthropi; 1.091647584 1.06914014 1.066965992 1.067503122 1.035426278 1.060026226 1.010602124 1.101211883 1.078172375 1.060689888 1.046519478 1.073784887 1.043517183 1.055817912 1.004089058 1.046983534 1.085910227 1.074658339 297165556 arsc Truepera radiovictrix DSM 17093 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Trueperaceae;genus:Truepera;species:Truepera radiovictrix; 0.844203033 0.789132047 0.811174782 0.838150649 0.803052553 0.790200126 0.812494006 0.807531189 0.820756667 238715525 amyA Yersinia bercovieri ATCC 43970 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia bercovieri; 1.171281392 1.118325671 1.151068766 1.160842352 1.110950048 1.117205873 1.104575847 1.129658084 1.161760172 1.131666419 1.11138514 1.121716426 1.120362345 1.116229047 1.075155031 1.117843941 1.160987822 1.14397175 194565418 exochitinase Burkholderia dolosa AUO158 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia dolosa; 0.784379065 0.827035383 0.811109302 0.762902197 0.825804086 0.802533256 219677225 linb gamma proteobacterium NOR5-3 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 0.857858394 0.848066645 0.89935103 0.862209341 0.791179994 0.888206756 0.811240759 0.922242002 0.94994558 0.842858498 0.817408545 0.853594338 0.842349127 0.84116602 0.809720265 0.901419813 0.852605984 3089607 amyA Thermus sp. IM6501 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus; 0.828286925 0.816810765 0.781953004 0.821784579 0.797089454 0.901282209 0.862278547 0.831645918 0.793196153 0.872861282 0.753460127 0.854104293 295894931 amyA Mycobacterium parascrofulaceum ATCC BAA-614 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium parascrofulaceum; 1.075678474 1.106923334 1.033563251 1.059881388 1.064846237 1.100420693 1.033865679 1.031092749 1.02352636 1.0167398 1.014492959 1.040369287 1.039424111 1.039132382 0.981022871 1.017015475 1.08596743 1.093968194 320094215 amyA Actinomyces sp. oral taxon 178 str. F0338 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 178; 0.918622321 0.954514346 0.894025955 0.901821868 0.88471579 0.975077779 0.892969332 0.885313539 0.863143281 0.917962481 0.894222264 0.890665835 0.89056212 0.920401624 0.865664532 0.891892078 0.90275434 0.922960184 255110080 APS_AprB Sideroxydans lithotrophicus ES-1 Sulfur adenylylsulfate reductase NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Gallionellales;family:Gallionellaceae;genus:Sideroxydans;species:Sideroxydans lithotrophicus; 1.139508869 1.140678967 1.118427897 1.122027832 1.138761986 1.118714722 1.072091398 1.135543579 1.121317904 1.116084113 1.116268534 1.116679217 1.141644319 1.076859732 1.069312373 1.081047218 1.117791707 1.120456961 160917619 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.848155213 0.921866348 0.863560421 0.891951534 0.887546478 0.923286774 0.831580691 0.833317079 0.800531611 0.860631459 0.874973098 0.871809646 0.882221704 0.830973918 0.873272916 0.907145762 254454763 FBPase Octadecabacter antarcticus 238 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter arcticus; 1.101621408 1.117852774 1.066213155 1.109042943 1.097179238 1.110690982 1.113372857 1.087818945 1.0819879 1.089546007 1.081683592 1.117457907 1.081478055 1.050938342 1.073197241 1.102367516 1.111494798 1.071864158 303278055 nitrate_reductase Micromonas pusilla CCMP1545 Nitrogen N Assimilation NA superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Mamiellophyceae;order:Mamiellales;genus:Micromonas;species:Micromonas pusilla; 1.278442044 1.28616718 1.258092914 1.260920941 1.258813449 1.29748631 1.26269979 1.250510168 1.233796163 1.247102127 1.264943625 1.278045186 1.250498585 1.246907578 1.228259514 1.265551567 1.267889521 1.241260403 11344614 norb Pseudomonas fluorescens Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 1.190559018 1.166452086 1.173034557 1.20274422 1.182507572 1.186940804 1.180469059 1.193908475 1.203942279 1.145766693 1.170075505 1.167281271 1.142026611 1.13083583 1.176619635 1.138501641 1.188032417 1.148456812 154492683 ara Parabacteroides merdae ATCC 43184 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Parabacteroides;species:Parabacteroides merdae; 0.84136207 0.869028049 0.877261507 0.839458238 0.79106456 0.867861493 0.787518681 0.810221683 0.888777286 0.84892902 0.902584231 0.847419732 0.813635941 0.895055301 0.849511401 0.812852097 0.812612061 0.892916922 78169469 CsoS1_CcmK Synechococcus sp. CC9902 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 1.013998847 0.985125155 0.949461825 1.023069381 0.933174457 1.049530335 0.949746742 0.994521644 0.995200619 1.011247875 0.963035349 0.988308973 0.92419009 0.992100511 0.858072622 0.933675838 1.024676779 1.029795113 112463805 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.861176711 0.798036824 0.93939403 0.838382159 0.86524041 0.823555179 0.838418848 364573786 cueo Yokenella regensburgei ATCC 43003 Metal Homeostasis Copper Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yokenella;species:Yokenella regensburgei; 1.00954168 0.976413206 0.932891478 0.989583741 0.927573315 0.936313113 0.944560506 0.949555882 0.988625861 0.94423972 0.922805382 0.939512688 0.911110365 0.870119698 0.883069778 0.885522142 0.965988793 0.977792387 340616316 cysI Zobellia galactanivorans Sulfur Other NA superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Zobellia; 0.922128416 1.032314009 0.866410603 0.906690853 0.955371355 0.871843278 0.904541449 1.013680369 0.913213528 0.953876852 0.880290408 0.886744422 0.88801058 0.925791095 0.894946484 0.864966666 0.866526903 0.921680162 304568766 norb Corynebacterium accolens ATCC 49726 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium accolens; 0.873164237 0.834446929 0.813985659 0.901300659 0.865944041 0.867359136 0.817031937 0.855295765 0.892704844 0.831988783 0.85982562 0.869447359 0.838641896 0.833741746 0.835321772 0.817759088 0.891518847 0.896515931 226364797 catechol_b Rhodococcus opacus B4 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus opacus; 0.852082954 0.859879931 0.851458226 0.844762633 0.836590625 0.832812019 0.85376029 0.828207824 0.842302097 0.801846836 0.861839749 0.842372393 0.833728344 0.848291615 0.833383948 0.841736126 0.888447319 164455298 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 1.038936608 1.075059703 1.033806202 1.045345892 1.082693623 1.102148241 1.042405296 1.02468805 1.040439075 1.022933507 1.042426431 1.02396673 1.030390741 1.022465909 1.01796654 1.011205761 1.069727504 1.078461588 374607699 tfda Mycobacterium tusciae JS617 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tusciae; 0.909677201 0.882360177 0.886659802 0.918666331 0.887939355 0.918288228 0.929703941 0.952700064 0.916135344 0.944775821 0.912066114 0.866537945 0.846841299 0.924389884 0.850586814 0.845492376 0.869545595 0.861430228 335999241 alkb Mycobacterium sp. 1.1-VEs Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 0.803755846 0.814830586 0.800616936 0.75543593 0.786520363 0.811492486 0.781865789 0.81127555 0.812817053 150269889 bco Bacteroides capillosus ATCC 29799 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;genus:Pseudoflavonifractor;species:Pseudoflavonifractor capillosus; 1.017681984 1.024502755 1.035330371 1.013442291 1.037953651 1.038886842 1.061371528 1.008434237 1.033052473 1.021552736 0.986260369 1.013232355 0.9727402 0.976357807 0.911262848 0.988692342 1.036404632 1.018203836 359821806 amyA Mycobacterium rhodesiae NBB3 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 0.820215348 0.832005299 0.816074114 0.786800771 0.805413122 0.820923979 346993066 alkb Ruegeria sp. TW15 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 0.909034067 0.909901157 0.878880366 0.913499185 0.846271779 0.849821938 0.899230878 0.846130271 0.912736484 0.85235183 0.902325652 0.933982652 0.904756575 0.854044087 0.87844601 0.886082413 1.006760244 0.893271952 94482876 rubisco Telmatospirillum siberiense Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Telmatospirillum; 1.099497861 1.076088078 1.066021637 1.092548756 1.071102928 1.058295769 1.095486497 1.068813607 1.121151986 1.071747938 1.077173347 1.123463635 1.050338735 1.033262816 1.051986639 1.044715452 1.068664417 1.083133862 359772902 terc Gordonia effusa NBRC 100432 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia effusa; 0.994779987 0.950690681 1.009845822 0.994623079 1.007578767 1.025186519 0.982116106 1.016044727 0.95844843 1.00029632 0.915973224 0.971030011 0.90482318 0.942272762 0.939179013 0.929424153 0.967854417 0.96418901 297592209 dsra uncultured bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.771215312 0.825361032 325983291 TIM Nitrosomonas sp. AL212 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas; 0.836027705 0.851308499 0.801981474 0.8406085 0.844827581 0.815095618 0.861748189 0.828284637 0.822364143 0.814226606 0.809961356 0.811447715 0.833464093 0.818282774 0.798583543 0.833446178 117949582 phenol_oxidase uncultured bacterium Carbon Cycling Carbon degradation Lignin superkingdom:Bacteria; 1.021391594 1.021118677 1.041439923 1.052573829 1.042052911 1.033146065 1.04043682 1.003874013 1.026236454 1.012350866 1.015285151 1.024333737 1.014241223 0.990279246 0.980934813 1.022556126 1.019716131 1.039387761 389871545 urec Advenella kashmirensis WT001 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Advenella;species:Advenella kashmirensis; 1.008456944 0.962702466 0.999772174 1.022609092 0.9667607 1.018216173 0.979639865 1.012680306 1.010879426 0.985985837 0.995004013 0.980958789 0.953379406 0.951955715 0.960320271 0.962017054 1.011053846 0.9818972 325964219 amyA Arthrobacter phenanthrenivorans Sphe3 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter phenanthrenivorans; 0.99575813 0.930697886 0.936825225 0.974682236 1.009120481 0.945918647 0.96683082 0.909649811 0.958505165 0.918917758 0.920360513 0.91546836 0.939414415 0.97140918 0.817718004 0.907520326 0.972689572 0.96294524 310941375 linb Mesorhizobium huakuii subsp. rengei Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium huakuii; 1.443196749 1.404583799 1.403488506 1.396729625 1.383333946 1.436254309 1.373259389 1.391360121 1.371465527 1.38770964 1.376407075 1.37559054 1.379945471 1.369390421 1.355868401 1.379130239 1.406435628 1.408842072 332671648 ara Cellulomonas fimi ATCC 484 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas;species:Cellulomonas fimi; 0.836326515 0.820673472 0.864986672 1.115128973 0.793382377 0.803549861 0.821460791 0.847390226 0.812896597 0.894344669 0.87851589 117990892 catechol Burkholderia phytofirmans PsJN Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 0.928764312 0.833909304 0.828368758 0.856823723 0.892764058 0.785034284 0.813514393 45386179 narg unidentified bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.246323593 1.251178722 1.199699477 1.230539468 1.172020981 1.234811752 1.203838181 1.216714165 1.187583212 1.212787467 1.18340384 1.198185285 1.157186511 1.187284625 1.135282959 1.169184754 1.208729558 1.213748907 2062565 B_lactamase_A Burkholderia cepacia Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 1.030257032 1.023328418 0.987965208 1.033579881 1.009512526 1.011893409 1.023009382 1.031338165 1.011765191 0.944371502 0.979865734 1.027813198 0.992224078 0.957946889 1.001184726 1.020822468 1.020128594 0.991600937 50084612 one_ring_12diox Acinetobacter sp. ADP1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 1.039520118 1.029152182 1.039958265 1.076911348 1.053386556 1.028239991 1.053418842 1.083874067 1.073031083 1.038809171 1.025480516 1.060865965 1.032991333 1.014991277 0.997080726 1.020960049 1.045281012 1.037203988 381375655 chitinase Actinoplanes missouriensis 431 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes;species:Actinoplanes missouriensis; 1.144108524 1.158523036 1.1508831 1.149231109 1.090141798 1.129329458 1.155025519 1.105152255 1.127667611 1.134555797 1.1103578 1.159692855 1.094882636 1.085909433 1.096069743 1.093317737 1.132594399 1.144364166 393775522 terc Ralstonia sp. PBA Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 0.959152239 0.960676264 0.93856542 0.920863877 0.873890265 0.973152531 0.924981497 0.907512786 0.943689197 0.981748738 0.921320484 0.948721993 0.890208442 0.902888094 0.863101754 0.891641121 0.974535411 0.982283527 315415690 xylanase Asticcacaulis excentricus CB 48 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis excentricus; 0.967408318 0.940664872 0.971032886 0.984300984 0.949523998 0.943263917 0.942641705 0.972716931 0.982311589 0.970775636 0.968803686 0.993478977 0.962478141 0.924087789 0.941496758 0.972250379 0.966431002 0.957314974 89893108 nifh Desulfitobacterium hafniense Y51 Nitrogen Nitrogen fixation NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 0.879884179 0.913099937 0.92599939 0.915391313 0.86792943 0.878197331 0.862508897 0.941887311 0.877586493 0.884979858 0.805606554 0.884053755 0.780797739 0.824003009 0.830696445 0.801380233 0.816224339 325538089 endoglucanase Xanthomonas vesicatoria ATCC 35937 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas vesicatoria; 0.976217622 0.982536129 0.984882822 1.049103642 1.056550669 0.994590518 1.011944781 1.007581601 1.019913694 0.952025839 1.004842207 1.128200639 0.943810915 0.933450849 0.920353438 0.937747856 1.01238665 0.991295078 60476239 dsrB uncultured bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.062733611 1.093148566 1.053453545 1.067343403 1.071360008 1.050872542 1.087920506 1.093680827 1.048842747 1.058918646 1.065303591 1.063198847 1.026953827 1.042683544 1.020857642 1.061394694 1.054546257 1.079912364 353188817 hyaluronidase Paenibacillus lactis 154 Carbon Cycling Carbon degradation hyaluronic acid superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus lactis; 0.866544895 0.861579193 0.820184487 0.870352897 0.846045882 0.899048871 0.853883344 0.819146995 0.850497953 0.840093365 0.848510464 0.857973277 0.846808383 0.835328315 212223303 gdh Thermococcus onnurineus NA1 Nitrogen Ammonification NA superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Thermococcus;species:Thermococcus onnurineus; 0.817509542 0.844212144 0.825905753 0.847689298 0.818229206 0.856097726 0.819921057 0.833522924 0.820066552 0.811432265 0.88139288 269979615 fthfs uncultured rumen bacterium Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria; 0.963837717 0.954298449 0.973257655 0.943940296 0.962026993 0.931106507 0.964119394 0.936311039 0.99514803 0.969354717 0.951584348 0.993497122 0.8787129 0.942135479 0.879196198 0.907875589 0.989109216 1.004003563 33415260 APS_AprB Thiobacillus denitrificans Sulfur adenylylsulfate reductase NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus; 0.844533761 0.82801405 0.85129492 0.92580197 0.911159995 0.986965033 0.92156388 1.057080086 0.890412663 0.940313574 0.918478743 0.925135349 0.859397134 0.818114531 0.86618349 0.868941742 0.819295881 109457181 dehh109 Roseobacter denitrificans OCh 114 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter denitrificans; 0.778993284 0.821088319 0.842178013 0.822991854 13470718 terc Mesorhizobium loti MAFF303099 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 1.115277531 1.117202281 1.059197971 1.064541278 1.047595006 1.10461909 1.033047316 1.064484615 1.033204111 1.045688961 1.063259638 1.062730782 1.025105542 1.048623887 0.99337227 1.019800659 1.085516091 1.058082059 13249525 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.003527559 0.982330467 1.023652846 1.040335984 1.042430299 1.000572073 1.044365859 1.019683695 1.019424425 1.001095464 1.020950047 1.026633559 0.987541645 0.925944526 0.948996122 0.970825408 0.997976356 0.99737853 283799601 pmoa uncultured bacterium Carbon Cycling Methane Methane oxidation superkingdom:Bacteria; 1.066026024 1.083388487 0.978457574 1.074648142 1.127115264 1.080113213 1.033544956 1.006351234 1.026541784 1.06802528 1.101458056 1.072947497 1.006656492 1.005798772 0.944937314 1.061183351 1.059408157 1.033510365 110632136 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.955148931 0.964971904 0.919047282 0.907164803 0.955918924 0.930882994 0.960478123 0.985276054 0.929768257 0.921313034 0.939400204 0.939427336 0.931601515 0.907329323 0.863856026 0.827873826 0.882878342 0.890660946 377658619 GAPDH_Calvin Thiorhodovibrio sp. 970 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiorhodovibrio; 0.765179665 0.872505225 144943649 terc Geobacter bemidjiensis Bem Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter bemidjiensis; 0.836475791 0.838790386 0.824608849 0.899485897 0.821259844 0.850421544 0.817179189 0.881785733 0.860188586 0.804099296 0.844620387 0.844442292 0.818103844 0.84269013 0.864474438 0.871217332 0.849475376 91690340 rubisco Burkholderia xenovorans LB400 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 1.516891048 1.512571474 1.477824117 1.452409261 1.462597091 1.54097294 1.450585364 1.469153268 1.448682152 1.451202568 1.476530167 1.461514429 1.458096939 1.466893804 1.458418403 1.465470775 1.489837789 1.491360407 183600670 gdh Providencia stuartii ATCC 25827 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia stuartii; 1.11014082 1.071530305 1.096998018 1.119483866 1.099934147 1.108409786 1.159129844 1.111491285 1.09435613 1.11490361 1.139383279 1.150399631 1.094910094 1.129529236 1.068955134 1.109977221 1.098768765 1.070528953 353188058 pcpb Mycobacterium rhodesiae JS60 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 0.790806115 0.874940817 0.842654855 0.772493676 0.851801282 0.831620255 0.834553143 0.763968049 0.852894415 0.855255079 0.847663756 0.827632369 0.859040358 359734844 dehh Rhodococcus pyridinivorans AK37 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus pyridinivorans; 1.20973716 1.205155099 1.179073912 1.205221202 1.185780616 1.203217348 1.190940911 1.207505256 1.198020133 1.209134739 1.211313104 1.203636102 1.150388557 1.159446154 1.14580607 1.155560066 1.205732207 1.175689711 219546809 ppx Candidatus Methanosphaerula palustris E1-9c Phosphorus Polyphosphate degradation NA superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;genus:Methanosphaerula;species:Methanosphaerula palustris; 1.036344788 1.015787065 1.113731041 0.992349838 0.96721081 1.044874473 1.017890427 0.99581188 1.039219701 1.039715638 0.989879784 1.00016515 0.953600325 1.024111351 0.960706647 0.970557696 1.034079806 1.051435378 356481878 amyA Mycobacterium thermoresistibile ATCC 19527 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium thermoresistibile; 0.864693495 0.944551719 0.898996225 0.8495972 0.918091089 0.924519829 0.854166784 0.856284121 0.897790953 0.923004874 0.872829108 0.875389797 0.896665955 0.883709156 0.868284847 0.917840894 0.953116791 0.934414931 366164925 phn Acetivibrio cellulolyticus CD2 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Acetivibrio;species:Acetivibrio cellulolyticus; 0.859243481 0.806439009 310824867 alginase Stigmatella aurantiaca DW4/3-1 Carbon Cycling Carbon degradation Alginate superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 0.968178462 0.975262013 0.90038027 0.935104344 0.907652598 0.958049555 0.94242826 0.953878735 0.937865295 0.94635072 0.900612106 0.966752182 0.861710853 0.926793128 0.855915494 0.850499598 0.971807327 0.942648402 377520663 badh Gordonia otitidis NBRC 100426 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia otitidis; 0.793724883 0.784670716 0.795739987 0.791791762 0.818095646 0.793302144 0.813366612 398215324 nfsa_2 Pantoea sp. YR343 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 1.10378282 1.112317887 1.070305665 1.074529964 1.073196782 1.101394628 1.083004848 1.061134952 1.080087275 1.08420244 1.116591376 1.072384907 1.087917508 1.074441205 1.067937179 1.071316693 1.086487513 1.081301318 325674416 amyA Rhodococcus equi ATCC 33707 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus equi; 1.124447047 1.142782321 1.110903537 1.141250967 1.106223311 1.1208875 1.103482396 1.083646739 1.121460155 1.095406565 1.112135966 1.092088582 1.048389457 1.053618365 1.034853285 1.07520931 1.14860612 1.130987429 164455360 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 0.828525027 0.806778187 0.834134709 0.844627466 0.814111649 0.831502572 0.806681211 0.850927291 333456270 CsoS1_CcmK Microcoleus vaginatus FGP-2 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Microcoleus;species:Microcoleus vaginatus; 0.813816688 0.815088162 0.849828622 0.808007517 0.833061915 0.820467492 0.798645079 0.82324449 0.850328353 240009047 mdlc Methylobacterium extorquens AM1 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium extorquens; 0.977117715 1.026782332 0.947927198 0.96920333 1.00915442 1.054955936 0.96452215 0.968639283 0.953833908 0.967859808 0.930711447 0.953206144 0.916788177 0.98831857 0.980399038 0.949412107 1.04923575 1.021709484 56785440 phenol_oxidase Trametes sp. AH28-2 Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Trametes; 1.241174273 1.233402341 1.210138339 1.22478936 1.200022853 1.266842112 1.205801759 1.218805136 1.189567097 1.189048904 1.190480707 1.211577923 1.185967862 1.188996963 1.214281368 1.232170071 1.248842038 1.232065304 239519233 amyA Clostridiales bacterium 1_7_47_FAA Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales; 1.146751505 1.116386516 1.127746884 1.121037124 1.115828354 1.104351167 1.074274572 1.097033857 1.101703813 1.148197188 1.165293696 1.133556413 1.104563059 1.122757114 1.102082715 1.102590642 1.108552887 1.115935729 90420481 arsc Aurantimonas sp. SI85-9A1 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Aurantimonas;species:Aurantimonas manganoxydans; 0.833297937 0.849127295 0.826677429 0.817670588 0.862589035 0.901289293 0.804311836 0.823690217 0.885826993 153798884 amyA Actinomyces odontolyticus ATCC 17982 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces odontolyticus; 1.238119752 1.223158501 1.219530529 1.23531215 1.233333257 1.240532833 1.228207706 1.240071833 1.217011712 1.212221178 1.226817132 1.228396624 1.225832849 1.18062225 1.203588453 1.210625504 1.219186991 1.222419535 89241914 rubisco uncultured bacterium Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria; 1.213179478 1.222288909 1.195543029 1.201538762 1.194094587 1.234767149 1.182913055 1.189993086 1.16594096 1.160921949 1.175780629 1.184288154 1.177422447 1.158943128 1.148816225 1.174584762 1.195819755 1.204195529 30269567 nasa uncultured bacterium Nitrogen Assimilatory N reduction NA superkingdom:Bacteria; 0.859557575 0.886040563 0.848131584 0.87070328 0.905464148 0.857760643 0.86328904 0.863440991 0.831215352 0.881228462 0.888233434 0.906451866 0.888882442 0.932970714 0.809829526 0.810178235 0.796206164 0.836251169 398038460 tfda Novosphingobium sp. AP12 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 0.953905699 0.992527241 0.913133121 0.943293736 0.888535596 0.974485582 0.907773493 0.896311879 0.94050455 0.992647595 0.932043613 0.913225012 0.91461017 0.916971909 0.891722711 0.901889843 0.974096419 1.000700072 302192867 cysJ Brevundimonas subvibrioides ATCC 15264 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Brevundimonas;species:Brevundimonas subvibrioides; 1.160021759 1.171984924 1.136223635 1.169927207 1.155177058 1.17018933 1.132068435 1.104419943 1.129426881 1.145825006 1.145442816 1.144654526 1.134213409 1.14663047 1.138142948 1.146718637 1.166669436 1.163418092 168703108 arsm Gemmata obscuriglobus UQM 2246 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Gemmata;species:Gemmata obscuriglobus; 0.805361931 0.835007417 0.81616985 0.825413412 0.842636896 0.83926088 0.854395187 124265860 urec Methylibium petroleiphilum PM1 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 0.905871346 0.897901748 0.930137458 0.909477241 0.891590993 0.958684133 1.060180218 0.830275497 0.825456165 0.996429006 1.045926484 1.018884771 1.058695475 0.955539203 0.858076574 0.925864725 0.926306717 0.873570284 300072626 tktA Herbaspirillum seropedicae SmR1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herbaspirillum;species:Herbaspirillum seropedicae; 0.885895322 0.905542581 0.915012433 0.838057906 0.857391359 0.9338188 0.843438024 0.821070818 0.835524281 0.820563009 0.83844851 0.834102711 0.830779651 0.844263197 0.841864528 0.887699155 0.934583572 147848175 FBPase Synechococcus sp. WH 7803 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 0.860374176 0.952256089 0.898116218 0.867046865 0.888944633 0.863585721 0.84926578 0.884208831 0.882071814 0.860353363 0.869903314 0.884067457 0.876731896 0.860211621 0.815473581 0.873489682 0.922376507 223558031 ara uncultured bacterium URE4 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria; 0.948451077 0.918215214 0.950762717 0.950152944 0.846472001 0.936193641 0.8740682 0.919609878 0.936219119 0.913994666 0.916353731 0.92128424 0.871508055 0.901637821 0.857215288 0.861803383 0.944019306 0.909672875 227238298 gdh Mobiluncus curtisii ATCC 43063 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Mobiluncus;species:Mobiluncus curtisii; 0.8568761 0.961752104 0.827029942 0.898724512 0.818450708 0.934546938 0.825654718 0.897844865 0.791867464 0.926007494 0.849519623 0.865295593 0.844192126 0.930525779 0.935208883 88184435 mer Chaetomium globosum CBS 148.51 Metal Homeostasis Mercury Detoxification superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 1.438960305 1.40999561 1.394043129 1.400211996 1.38426484 1.394202005 1.358646026 1.382245664 1.410497888 1.399389536 1.385889021 1.406284942 1.349260465 1.35681205 1.361773794 1.373830583 1.396934323 1.393277029 380695494 amyA Bacteroides faecis MAJ27 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides faecis; 0.80430413 0.815933153 89099630 pula Bacillus sp. NRRL B-14911 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 0.854658843 0.818155602 0.825077449 0.807232988 0.859014338 358245995 amyA Gordonia araii NBRC 100433 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia araii; 1.025813121 1.046188126 0.972117037 0.995133815 0.955105647 1.036965001 0.958940676 0.941192492 0.953357031 0.981309455 0.931384957 0.97060757 0.934612379 0.959463815 0.919272819 1.008425074 1.023402231 1.074382967 373553924 chnb Mycobacterium tusciae JS617 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tusciae; 1.014436072 1.016832998 1.018491416 0.989516199 0.969481128 1.016716419 0.963099123 0.977080546 1.018266669 1.016141458 0.992416772 0.988073557 0.980958245 1.003577892 0.98811502 0.941393434 1.02587558 1.025287134 117609203 dsrB Magnetococcus sp. MC-1 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;genus:Magnetococcus; 0.895343293 0.976703534 0.911267473 0.89959703 0.912066247 0.939585785 0.879546451 0.895656737 0.857190592 0.89232762 0.884499286 0.848444783 0.900381106 0.900719494 0.909164916 0.859797388 0.901557495 0.910301643 114764524 phn Roseovarius sp. HTCC2601 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pelagibaca;species:Pelagibaca bermudensis; 1.495158672 1.459074092 1.453384898 1.496574595 1.473693548 1.474739224 1.462649008 1.507709658 1.460672684 1.457493007 1.452570058 1.525615612 1.430958084 1.437501603 1.458958963 1.469638798 1.447465584 1.430749481 311742298 nira Aeromicrobium marinum DSM 15272 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Aeromicrobium;species:Aeromicrobium marinum; 0.89667272 0.849795433 0.839848038 0.867585839 0.881823446 0.866347136 0.879960929 0.845472302 0.953946344 0.836428984 0.831457282 0.866762824 0.932393757 0.87241685 41033725 mer Thermoproteus tenax Metal Homeostasis Mercury Detoxification superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Thermoproteus; 0.902330966 0.906197279 0.828400128 0.906412134 0.830634054 0.889355459 0.863933525 0.897701475 0.875113778 0.923793717 0.865293077 0.898217782 0.868060403 0.89609159 0.856502837 0.913529081 0.910899382 242310775 AcnA Helicobacter pullorum MIT 98-5489 Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Helicobacter;species:Helicobacter pullorum; 0.903433693 0.876413296 0.861274991 0.881217821 0.787459095 0.807835716 0.827950355 0.792934853 0.849378155 52631732 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.82180231 0.803861936 0.88749901 0.951475689 0.983257781 0.831861728 0.834912834 0.855773719 0.785252601 0.840624735 0.861973607 68537002 ppx Corynebacterium jeikeium K411 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium jeikeium; 0.929995572 0.910277965 0.923728161 0.92693596 0.880643194 0.903236368 0.862557373 0.929504521 0.92637736 0.904570473 0.968185284 0.88656817 0.867389681 0.910568896 0.881475086 0.870464622 0.936252562 0.932424918 91690603 phn Burkholderia xenovorans LB400 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 1.026235662 1.029857724 1.052754502 1.060472007 1.003887099 1.009596402 1.038391845 1.018649166 1.041961394 1.008002035 1.042102387 1.061578033 1.004455816 0.989266161 1.032591631 1.018756953 1.020629584 1.042808517 164427228 endochitinase Neurospora crassa OR74A Carbon Cycling Carbon degradation Chitin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Neurospora;species:Neurospora crassa; 1.079283001 1.041564499 0.988646997 1.054166898 0.993935853 1.073411679 1.011603819 1.003334669 1.049804344 1.020907619 1.004007638 1.023409467 0.989638881 1.056211303 0.996989409 1.017974897 1.055021286 1.010228606 291299827 pcag Stackebrandtia nassauensis DSM 44728 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Glycomycetaceae;genus:Stackebrandtia;species:Stackebrandtia nassauensis; 0.898059902 0.895168646 0.974479794 0.845139971 0.931657047 0.881723616 0.907580212 0.926285634 0.863570468 0.867927612 0.885321245 0.886173649 0.820345571 0.848080246 0.899692874 0.940099594 0.830091406 209963641 phytase Rhodospirillum centenum SW Phosphorus Phytic acid hydrolysis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum centenum; 1.255876969 1.147393008 1.080894397 1.117457614 1.094363083 1.145522399 1.050769726 1.155533933 1.130704526 1.085758326 1.04713922 1.086622689 1.080808143 1.086349114 1.024319342 1.050894304 1.181925039 1.1390366 83718912 nosz Burkholderia thailandensis E264 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia thailandensis; 1.032563368 1.08796606 1.016667916 1.038182967 1.03544785 1.074157962 1.015930961 0.997928515 1.005977349 1.071391611 1.042389602 1.059694422 1.02954221 1.040547677 0.992423738 1.045824026 1.044359257 1.056260525 383461910 ppx Saccharomonospora xinjiangensis XJ-54 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora xinjiangensis; 0.905822113 0.834064026 0.87842301 0.889738985 0.862490746 0.838399156 0.882092824 0.83383968 0.871473986 0.843307791 0.828057225 0.862180528 0.817758291 0.836639131 0.86524514 0.89847543 0.864117156 299134130 SoxC Afipia sp. 1NLS2 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Afipia; 0.85180391 0.962878904 0.869842914 0.927479476 0.916354013 0.844311455 0.919963263 0.874764164 0.933490625 0.898107771 0.872400497 0.919961135 0.896669299 0.845193251 0.802678139 0.846021513 0.919485496 0.893375172 53850118 SoxC Pseudaminobacter salicylatoxidans KCT001 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Pseudaminobacter;species:Pseudaminobacter salicylatoxidans; 0.917365359 0.937084938 0.891909009 0.923275839 0.902610289 0.914238602 0.921659534 0.895593736 0.911657765 0.919373378 0.891970939 0.902558525 0.88578023 0.847137163 0.87069941 0.889295819 0.935423082 0.964902157 397733047 mhpc Rhodococcus sp. JVH1 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 0.809533229 1.027305442 0.790095941 0.800393825 0.790479017 0.85078639 0.886169307 388256067 ppx Cellvibrio sp. BR Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio; 0.882724557 0.816808996 0.930526213 0.931787748 0.878280811 0.896297181 0.902575277 0.927724453 0.879083659 0.894113257 0.910725009 0.904210942 0.853729157 0.882649042 0.841204502 0.846768852 0.878895018 0.837994254 77378705 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.786936211 0.859933393 0.813513366 0.829552477 0.822805748 0.811538962 0.786159186 0.784646757 0.875673965 375143809 urec Niastella koreensis GR20-10 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;genus:Niastella;species:Niastella koreensis; 0.922940755 0.899707314 0.872117901 0.906189992 0.888452844 0.916368307 0.953262389 0.914451453 0.851066995 0.930144101 0.896202555 0.903795566 0.87285715 0.85224958 0.81083963 0.849385356 0.889487011 0.929204414 227328020 pme Pectobacterium carotovorum subsp. carotovorum WPP14 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium carotovorum; 0.79793944 0.812284699 0.798318226 0.813951419 0.800880622 0.805587702 0.827379944 0.852409463 217978430 pgk Methylocella silvestris BL2 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Methylocella;species:Methylocella silvestris; 1.000842248 0.981198777 0.979585671 1.023456439 0.907519717 0.962414015 0.87462426 0.932230661 0.995934974 0.941386925 0.95681735 0.973846558 0.909142866 0.935064667 0.889691832 0.91257334 0.999561144 0.999463766 118017748 dmsa Serratia proteamaculans 568 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia proteamaculans; 0.890431865 0.806939104 0.845858196 0.860624112 0.876888108 0.896661639 0.891624966 0.851249256 0.871394555 0.880127559 0.884114627 0.813138976 0.851238622 0.855802035 0.870197433 0.850315434 0.866691366 0.917132353 32307889 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.15381845 1.147556254 1.061172815 1.101826351 1.069904293 1.142186722 1.070235859 1.075187114 1.071955165 1.088741676 1.070818853 1.066572414 1.048921407 1.073194421 1.034614441 1.078718234 1.138608107 1.146275585 326655018 cellobiase Streptomyces griseus XylebKG-1 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseus; 0.785393737 0.79935612 0.837676109 0.786126615 346991888 FBP_aldolase Ruegeria sp. TW15 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 0.845771621 0.818777593 194332882 dsra Prosthecochloris aestuarii DSM 271 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Prosthecochloris;species:Prosthecochloris aestuarii; 0.891734494 0.902740162 0.87938694 0.882954389 0.843130305 0.889582588 0.842416971 0.863450871 0.87773569 0.841894124 0.831787221 0.869383188 0.867084492 0.910490643 0.848518405 0.902268184 0.925508607 373852415 ara Opitutaceae bacterium TAV5 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 1.077223005 1.019781637 1.06430417 1.085646231 1.034503265 1.044338282 1.07054929 1.081968775 1.05890692 1.015749659 1.039587192 1.025905437 1.029588521 0.994888061 1.001203959 0.986327222 1.045098387 1.012334108 258556198 amyA Nakamurella multipartita DSM 44233 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nakamurellaceae;genus:Nakamurella;species:Nakamurella multipartita; 0.866194917 0.829764005 0.826074001 0.799228245 0.861495381 0.884059275 0.811159253 0.860590461 0.842736451 0.811608027 0.838579913 0.818323847 0.881770468 0.887003573 390428371 ppx Thiocystis violascens DSM 198 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiocystis;species:Thiocystis violascens; 1.137370224 1.134723708 1.106051476 1.139142163 1.100126174 1.19300285 1.083425424 1.131671719 1.081173114 1.166515066 1.094654769 1.132990735 1.087173641 1.10302105 1.029967279 1.085177669 1.114554525 1.113065006 192289979 fccab Rhodopseudomonas palustris TIE-1 Sulfur Sulfide Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 0.993098765 0.941026535 0.935895363 0.914052616 0.897051006 0.930098382 0.929332161 0.974474304 0.90734102 0.94614394 0.873173913 0.935772024 0.904445585 0.916664961 0.883046342 0.92877802 0.967702481 0.932528789 384438500 alkk Thermus sp. CCB_US3_UF1 Organic Remediation Others NA superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus; 0.983509954 0.971204703 0.991241419 0.958623458 0.982872921 0.968537792 0.941520107 0.951743046 0.947043307 0.952112159 0.919786923 0.932144883 0.89296433 0.891362147 0.883304679 0.842711122 0.958174867 0.986292922 338757759 FBP_aldolase Roseobacter litoralis Och 149 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter litoralis; 0.919673979 0.899732362 0.905977894 0.934017471 0.937391896 0.862229948 0.958620781 0.944731449 0.914839544 0.907108316 0.8644307 0.914058758 0.884584213 0.862997076 0.878183214 0.813464442 0.907454169 0.904910381 333374293 nira Desmospora sp. 8437 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Thermoactinomycetaceae;genus:Desmospora; 0.794954835 0.791596856 0.891940578 0.829405759 0.872268303 0.854634146 0.845414528 0.804316168 0.837239477 0.864478329 0.810115787 0.852806427 0.850286441 0.850746506 0.871228695 0.842760233 0.824471085 0.857165511 399908851 b_lactamase Halomonas sp. KM-1 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas; 1.155094631 1.138611837 1.174128014 1.165601342 1.139717118 1.221395532 1.132750184 1.14878465 1.24049765 1.164611349 1.145319392 1.180573732 1.131893719 1.108883508 1.102099823 1.133540177 1.166060975 1.149042156 262083034 ben_bcla Haliangium ochraceum DSM 14365 virulence NA NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Kofleriaceae;genus:Haliangium;species:Haliangium ochraceum; 1.035892231 0.993403167 0.971451607 1.064623409 0.98016054 1.01837512 0.980885825 0.994778212 1.020099701 1.016172496 0.985740185 1.007238038 0.973655525 1.012682629 1.004855861 0.984415447 1.03392571 0.999543365 359311053 nirb Gordonia effusa NBRC 100432 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia effusa; 0.878963235 0.863161692 0.857622383 0.945210086 0.875844038 0.878340765 0.884401664 0.897367265 0.880234672 0.860825032 0.847438547 0.851163629 0.837947344 0.80337541 0.820959759 0.872584842 0.885497345 258575935 phospholipase_A2_fungi Uncinocarpus reesii 1704 Carbon Cycling Carbon degradation Phospholipids superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Onygenaceae;genus:Uncinocarpus;species:Uncinocarpus reesii; 0.791514998 0.810376881 0.805172021 0.7914605 0.827075148 0.789699739 0.786224727 0.820660509 288943375 arsc Thioalkalivibrio sp. K90mix Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio; 1.393195797 1.4180329 1.354595591 1.353569701 1.368047915 1.444229955 1.365290843 1.358815503 1.342758125 1.35681254 1.344525336 1.328585771 1.335523913 1.353547971 1.361238135 1.372870791 1.390233065 1.37580049 317397034 pula Bacillus sp. 2_A_57_CT2 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 0.799189534 0.827967797 0.784281523 0.874951692 0.863307167 0.806195256 0.829657612 0.847177069 0.939967163 0.866127944 0.803811619 0.854757136 0.85149799 0.780979109 0.860887612 229488764 one_ring_12diox Rhodococcus erythropolis SK121 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 0.844178687 0.905203462 1.028179421 0.858198821 0.941958879 0.85302267 0.814477989 0.782503405 0.813478005 1.001887294 0.816533467 0.825542941 0.860297864 0.820535388 0.855358638 0.798523382 0.847031944 558805 mauab Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus; 0.972161251 0.924654468 0.938990896 0.959110748 0.886427556 0.898645455 0.883170824 0.954223296 0.973078835 0.934638675 0.877982528 0.986223508 0.877356041 0.866870723 0.8826028 0.884314103 0.977347573 0.934128117 254241309 bphc Pseudomonas aeruginosa 2192 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 0.914039997 0.939436577 0.904048076 0.947943156 0.892885218 0.89338499 0.861477574 0.91174989 0.92975544 0.938869638 0.864889176 0.910334888 0.843557152 0.890822642 0.853684227 0.943466683 0.940328365 209549625 tktA Rhizobium leguminosarum bv. trifolii WSM2304 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 0.82639541 0.86107476 0.85113139 0.822026814 0.797326105 0.834808716 0.818226809 0.841101798 0.83414363 0.868242516 0.808743285 0.836035449 94471355 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.942902444 0.925519674 0.929647812 0.986143817 0.942213469 0.978364016 0.992535981 0.954042892 0.958531616 0.960782741 0.9844477 0.94928448 0.948999491 0.918446287 0.894176606 0.945180219 0.967661612 0.895491984 339282949 mnp Polyporus brumalis Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Polyporaceae;genus:Polyporus; 1.178024917 1.147114912 1.164549214 1.231953647 1.113571339 1.163447458 1.103313532 1.205267214 1.193836033 1.128872133 1.103639875 1.117597458 1.08938991 1.094241574 1.080511072 1.171572212 1.205102999 1.133395137 351728893 xyla Acidovorax radicis N35 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax radicis; 1.029363729 1.004686156 0.95642659 0.960888733 0.969976738 0.963580416 0.95662844 0.889569796 0.941207803 0.994850175 0.98228257 0.994888501 0.999990928 0.981963879 0.93559622 0.988225018 0.963805096 0.979461248 118168943 ccmL Mycobacterium smegmatis str. MC2 155 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 1.048821684 1.073425613 1.074732169 1.048855981 1.073881989 1.080822111 1.064608861 1.073879248 1.011955978 1.052767198 1.09229081 1.056745833 1.050838912 1.022969031 0.988442416 1.012588601 1.101208543 1.085328108 289976687 trzn Arthrobacter sp. T3AB1 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 0.923252291 0.882215648 0.811030488 0.862068805 0.831664993 0.845375111 0.863090504 0.828648989 0.864782224 0.859456191 0.827115015 0.830204462 0.871450005 0.857274352 70985570 inulinase Aspergillus fumigatus Af293 Carbon Cycling Carbon degradation Inulin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Aspergillus fumigatus; 0.935341193 0.899219515 0.974351775 0.896110714 0.925687126 0.929551967 0.833430503 0.876595726 0.938742177 0.944703134 0.92807255 0.896893137 0.942063302 0.974158627 0.911379291 0.930332806 0.990516696 0.949634191 292485872 nirk Rhodanobacter sp. 2APBS1 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Rhodanobacter; 0.969300878 0.927843494 0.860037842 0.91271411 0.848660768 0.925420098 0.827890327 0.92654357 0.908885772 0.92939337 0.963306927 0.921211784 0.800109434 0.964349568 0.832713836 0.864396293 0.927937098 0.922053735 317018276 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.082713066 1.057165667 1.035706029 1.075916053 1.007291171 1.019349134 0.998133171 1.066659541 1.102305056 1.005188966 0.991916739 1.031551384 0.983090873 0.975986121 0.96609071 0.998182498 1.057987267 1.062747224 538158 nitrate_reductase Phytophthora infestans Nitrogen N Assimilation NA superkingdom:Eukaryota;order:Peronosporales;genus:Phytophthora; 1.075323035 1.046419804 1.030195706 1.050128597 1.044436479 1.029855095 1.033755412 1.112487406 1.038080865 1.022517373 1.005274975 1.052686213 0.975359196 0.99105802 0.927263461 0.979466427 1.047460259 1.063191321 288348950 vgb Frankia sp. EUN1f Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 0.903667116 0.887372298 0.856284539 0.821673181 0.850263137 0.831388744 0.864723019 0.801511384 0.810980739 0.875132423 0.836488275 346992529 TIM Ruegeria sp. TW15 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 0.983262615 0.981449954 0.9811087 1.048388859 0.991949368 0.999814765 0.950809138 0.964416728 0.967082272 0.955588689 0.945464969 0.966037632 0.998711413 0.9394515 0.943980716 0.948375762 1.041707621 0.979867184 330925558 rgl Pyrenophora teres f. teres 0-1 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora teres; 0.811171317 0.948241786 0.868503139 0.858492404 0.848845757 0.867577926 0.854804193 0.817734494 0.91548013 0.840293495 0.814787186 0.88071567 0.860666575 0.977999657 51534821 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.065301169 1.044561448 1.112648393 1.136350105 1.099420506 1.074295721 1.131110188 1.112595111 1.105893878 1.108708559 1.08980097 1.114796937 1.070676056 1.056500931 1.100625473 1.086608266 1.099421355 1.06073036 399039565 nfsa_2 Rhizobium sp. CF122 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 0.923809771 0.908816838 0.898420785 0.941900734 0.937665549 0.934763801 0.954050591 0.939023916 0.928811047 0.868441079 0.903013155 0.905684818 0.842603369 0.859135147 0.856169181 0.85885462 0.996997594 0.973764578 219860730 RgaE Arthrobacter chlorophenolicus A6 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 0.824099964 1.061900442 0.815269136 0.936445726 0.964018428 0.829440253 0.932625714 0.867831286 0.918712418 0.86387697 0.827924564 0.948720767 0.891447603 0.81232868 0.87143519 150397583 urec Sinorhizobium medicae WSM419 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 0.818835569 0.841816903 0.832343632 0.856790023 0.800040071 0.808147402 0.779805746 0.825228901 0.789093172 115384838 exopolygalacturonase_fungi Aspergillus terreus NIH2624 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 1.202296304 1.200304375 1.199374633 1.173061076 1.141985332 1.154157697 1.128659204 1.151253915 1.174519106 1.161877176 1.164846176 1.179878668 1.142700467 1.135472477 1.131269565 1.146561281 1.192045305 1.181634873 332992594 atzb Alteromonas sp. SN2 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alteromonas; 0.810587075 0.814724778 326544208 urec Marinomonas mediterranea MMB-1 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Marinomonas;species:Marinomonas mediterranea; 1.11184255 1.099948273 1.062472924 1.130067393 1.085434983 1.125643932 1.078824455 1.09997946 1.126262841 1.080472562 1.068335254 1.109314292 1.087994742 1.055752422 1.06583502 1.10790006 1.079264172 1.016815626 389879357 alkk Tistrella mobilis KA081020-065 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Tistrella;species:Tistrella mobilis; 0.768990891 0.804693825 0.798870611 0.779120496 0.82616318 0.773683103 29604442 alginase Streptomyces avermitilis MA-4680 Carbon Cycling Carbon degradation Alginate superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 1.153721527 1.157051752 1.122362207 1.129960751 1.1302215 1.163996224 1.067442915 1.07808975 1.117134119 1.146999168 1.111758104 1.150971295 1.087264904 1.138340943 1.096906875 1.117704929 1.168061929 1.147500635 393771257 terc Novosphingobium sp. Rr 2-17 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 1.088918034 1.09645138 1.086191948 1.075327021 1.036613405 1.052985657 1.003311645 1.049915602 1.063775956 1.058981094 1.070038628 1.075783844 0.99620479 1.024768163 1.085424151 1.010988629 1.075121397 1.082328643 170140632 pcpe Burkholderia graminis C4D1M Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia graminis; 0.860379321 0.795792687 0.841525049 0.862789737 182434357 bphF1 Streptomyces griseus subsp. griseus NBRC 13350 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseus; 0.978959578 0.974392256 0.934224168 0.944247656 0.956465056 0.941201634 0.935382344 0.935413653 0.947832787 0.947817116 0.904081849 0.935015013 0.875885822 0.872461976 0.866827905 0.868906357 0.93480783 0.962260561 67538016 pcpe Aspergillus nidulans FGSC A4 Organic Remediation Herbicides related compound NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 0.842865978 0.839877809 0.784118685 0.840223816 0.799893628 0.839590773 302436914 chitinase Streptomyces sp. AA4 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 0.820099301 0.909661669 0.840639557 0.818032279 0.827664209 0.81862907 0.787502746 110006524 mcra uncultured euryarchaeote Carbon Cycling Methane Methanogenesis superkingdom:Archaea;phylum:Euryarchaeota; 1.134083659 1.136250056 1.109309902 1.106594271 1.115555848 1.144380222 1.090818367 1.069125494 1.123196534 1.095951164 1.123002942 1.093918454 1.078054056 1.090618468 1.073524245 1.08779095 1.11487866 1.152916534 190688498 cysJ Cellvibrio japonicus Ueda107 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio;species:Cellvibrio japonicus; 0.853482425 0.807901415 0.833583083 0.804129137 0.819921868 0.827556682 0.855078664 0.818238947 0.808087806 0.814577881 0.866772183 0.803117758 0.794009545 0.845382242 0.85630158 302561000 amyA Streptomyces griseoflavus Tu4000 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseoflavus; 0.991318881 0.94795239 0.955473985 0.965415452 0.915858838 0.906043253 0.992557585 0.948966079 0.974769688 0.951408512 0.939859118 0.844684286 0.931741472 1.012537936 0.937365602 260457718 urec Streptomyces flavogriseus ATCC 33331 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces flavogriseus; 0.849374185 0.947227173 0.877962782 0.910953595 0.891160349 0.923963536 0.833439397 0.858898413 0.800502606 0.927024597 0.868242744 0.920171918 0.862341409 0.824554627 0.873306748 0.891263063 0.926741547 295977496 vana Gluconacetobacter hansenii ATCC 23769 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter hansenii; 1.310013874 1.323413029 1.283729171 1.31305286 1.288573485 1.320448234 1.262076387 1.265794339 1.280222566 1.282287338 1.274028369 1.299349866 1.277296095 1.274803073 1.206241485 1.26510145 1.339865392 1.274716122 197768726 terc Streptomyces clavuligerus ATCC 27064 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces clavuligerus; 0.987925872 0.993843212 0.954948438 0.970511202 0.958168143 0.990590938 0.965572511 0.974165776 0.990596613 0.97141983 0.972583772 0.983680479 0.945196799 0.982739877 0.955765056 0.939840461 0.992721646 0.99686623 3978254 acetylglucosaminidase Pseudoalteromonas sp. S9 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas; 0.848229115 0.885414527 0.882028879 0.87657228 0.864706367 0.872939754 0.834967515 0.823227905 0.840087057 0.831483577 0.811808916 0.834485222 0.813429846 0.891903582 0.891363198 110819505 mdld Rhodococcus sp. RHA1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 1.015153537 1.009649866 1.019305945 1.01383341 0.959262489 1.021805903 0.959801136 0.978645059 0.99134625 0.991115704 0.985985169 0.991972964 0.949623886 0.963877417 0.909532122 0.950818737 1.0009037 1.009031481 110817599 amyA Rhodococcus jostii RHA1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 1.330096694 1.346474658 1.320879405 1.294613776 1.317174151 1.368551853 1.282524985 1.29996918 1.275887984 1.316247777 1.317708028 1.301876596 1.293376002 1.314470949 1.286501056 1.309174464 1.330653564 1.32484406 114321609 bphF1 Alkalilimnicola ehrlichii MLHE-1 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Alkalilimnicola;species:Alkalilimnicola ehrlichii; 0.867824998 0.868580469 0.896179472 0.878791119 0.803109953 0.823789613 0.829636454 0.925724239 0.814101756 0.841447699 0.843920355 0.837917233 0.819096003 0.884978958 0.903200426 17131658 GAPDH_Calvin Nostoc sp. PCC 7120 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc; 1.338432382 1.311221983 1.300118539 1.329693375 1.294837271 1.297714255 1.318699727 1.309292105 1.337281579 1.31167081 1.344240996 1.332693174 1.257580981 1.252885218 1.253786585 1.311504167 1.297612594 1.323169143 381397513 amyA Microbacterium laevaniformans OR221 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Microbacterium;species:Microbacterium laevaniformans; 1.088466191 1.071003542 1.079555024 1.062990883 0.994846612 1.035559276 1.010306426 1.029090504 1.0471188 1.068077364 1.022558874 1.045174081 1.00795194 1.009181321 0.983961269 1.005704957 1.090112989 1.08205562 384921391 alkb Citreicella sp. 357 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Citreicella; 0.863755118 0.884169632 0.885969181 0.91327485 0.907507871 0.942005481 1.00682579 0.916744358 0.930861432 0.935847348 0.887344149 0.93555735 0.891218436 0.919381846 0.874363765 0.908061178 0.925111324 0.934384343 260647377 chitinase Streptomyces scabiei 87.22 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces scabiei; 0.958401898 0.963075555 0.979678907 0.969248081 0.985042985 0.99902537 0.992537625 0.9629717 0.960037354 0.984063302 1.000421609 0.997546905 0.968346386 0.98572309 0.970540775 0.990349077 0.959737776 0.978401682 84387685 alginase Vibrio splendidus 12B01 Carbon Cycling Carbon degradation Alginate superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio splendidus; 0.852986734 0.809451212 0.839899618 0.82429925 0.839615395 0.800696445 0.889129644 0.827128167 0.823464627 0.838040759 0.818177288 0.842647263 0.88756871 0.883372111 94471171 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.029322473 1.008459222 1.058015472 1.0534855 1.074941836 1.028434052 1.071397212 1.030278566 1.060737091 1.078696786 1.095682779 1.080443655 1.030800602 1.036337309 1.015559214 1.026327483 1.052811012 1.082214915 302422028 cellobiase Verticillium albo-atrum VaMs.102 Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticilium;species:Verticillium albo-atrum; 0.865335645 0.872495643 0.903142662 0.789242281 0.828162698 0.852131284 0.886545923 0.860703494 0.864774834 0.832377405 0.893424863 0.916274844 350530045 FBPase Vibrio rotiferianus DAT722 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio rotiferianus; 0.937090528 1.0088881 0.969013099 0.962324393 0.973774933 0.953853455 0.936060133 0.935578677 0.976356647 0.946659933 0.982800452 0.976999266 0.941165484 1.00839352 0.956983388 0.950690916 0.969648913 0.926390753 332994780 alginase Alteromonas sp. SN2 Carbon Cycling Carbon degradation Alginate superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alteromonas; 0.816719547 0.830603212 0.842873666 0.840092483 0.850892245 0.857612603 0.883669519 0.859927028 0.815996091 0.836653066 261361667 ligninase Verticillium albo-atrum VaMs.102 Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticillium;species:Verticillium alfalfae; 0.838754563 0.833575144 0.821142019 0.865821883 0.804156524 0.835032372 0.836870671 0.811440539 0.850950282 0.888518154 258556572 chitinase Nakamurella multipartita DSM 44233 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nakamurellaceae;genus:Nakamurella;species:Nakamurella multipartita; 0.764507119 0.820663621 162568551 aoxb uncultured bacterium Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 1.194994804 1.175162983 1.16839377 1.197078045 1.162830648 1.198312834 1.154518894 1.170705019 1.174001874 1.150767745 1.181473273 1.188841105 1.156103488 1.152475718 1.159783492 1.144619089 1.198246407 1.170374086 347523817 fumarase_DiC4HB Pyrolobus fumarii 1A Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Desulfurococcales;family:Pyrodictiaceae;genus:Pyrolobus;species:Pyrolobus fumarii; 0.806690823 0.807557699 329568872 ara Paraprevotella xylaniphila YIT 11841 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Paraprevotella;species:Paraprevotella xylaniphila; 0.886548732 0.872312508 0.860909263 0.895334004 0.929683213 0.918943018 0.886565526 0.931352054 0.90793499 0.905109873 0.874519587 0.940382792 0.856071842 0.867938909 0.894943439 0.901577141 0.89482301 0.881792307 301335087 merb Pseudomonas plecoglossicida Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.863640045 1.023400573 0.805924411 0.829819362 0.78448862 0.822643159 0.832903806 0.82193118 0.854640406 0.86461862 86555282 trze Synechococcus sp. JA-3-3Ab Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 0.956760886 0.928689172 0.916714501 0.922896657 0.939499537 0.936407075 0.968267474 0.906122712 0.958794063 0.93869257 0.963995454 0.965419438 0.941560509 0.896478647 0.869096415 0.925651564 0.953044633 0.951439956 73541021 ben_bcla Ralstonia eutropha JMP134 virulence NA NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 0.84318135 0.873521592 0.812507029 0.859921843 0.829648869 0.85168106 0.814042831 0.853810941 0.837502176 0.832675179 0.827661242 0.860464 0.876741677 5360700 mult_ring_12DiOx Rhodopseudomonas palustris Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas; 0.831362905 0.85889398 0.832180284 0.893335446 0.841208267 0.825317376 0.827906387 0.831250472 0.83000353 0.875517712 0.845551684 0.858890324 0.856420368 0.846988273 0.908860599 0.827859155 353451534 cutinase Mycobacterium abscessus 47J26 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium abscessus; 0.99496842 0.971829112 1.000939364 1.000263318 0.949753766 1.001877562 0.951709325 0.980910159 0.983604431 0.998251028 1.007664339 0.980463363 0.934085973 1.018088058 0.918954009 0.946981122 0.976397455 0.986071455 139478567 mer uncultured soil bacterium Metal Homeostasis Mercury Detoxification superkingdom:Bacteria; 0.949596686 0.964628958 0.88355543 0.963095583 0.926767446 0.916495132 0.918710225 0.918834348 0.9517631 0.934121477 0.913070784 0.961168598 0.883157335 0.913342205 0.841678353 0.895146409 0.921173465 0.949683516 190572032 xylg Pseudomonas sp. CT14 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 1.099413417 1.078903305 1.036376002 1.039433203 1.045703788 1.057179401 1.048528066 1.093449029 1.050890931 1.05229489 1.037733166 1.043007806 0.983662057 0.99488511 0.909315048 1.014748622 0.980933987 0.995354694 111023819 dmsa Rhodococcus sp. RHA1 Organic Remediation Others NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 0.798665499 0.891930276 0.935373736 0.798814564 0.816064225 0.804792699 0.805029925 0.834398595 0.823697252 0.79714367 0.818871821 0.839593196 0.848018649 33391385 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.811449059 0.849290221 0.796697297 0.83239379 0.849755464 0.850121418 226833061 amyA Actinomyces urogenitalis DSM 15434 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces urogenitalis; 0.838405742 0.785757248 0.856707741 0.841525544 0.877825965 0.844047178 0.865837501 0.837639071 0.878509832 0.846347261 0.838040947 0.823088821 302679142 Glucose_oxidase_fungi Schizophyllum commune H4-8 Carbon Cycling Carbon degradation glucose superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 1.240582695 1.250925051 1.211742451 1.248622135 1.240736948 1.2817244 1.192314743 1.21723488 1.234947672 1.234746453 1.18518608 1.208588184 1.250488426 1.205889906 1.187367016 1.225111268 1.258713962 1.22017774 323358552 chitinase Microbacterium testaceum StLB037 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Microbacterium;species:Microbacterium testaceum; 1.076921604 1.071997968 1.262057657 1.063552419 1.042533999 1.073945936 1.024119782 1.034227181 1.047216838 1.054429672 1.078029885 1.065667478 1.000486944 1.018823277 1.013368495 1.029156685 1.086953257 1.040863189 319994955 amyA Anaerolinea thermophila UNI-1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Chloroflexi;class:Anaerolineae;order:Anaerolineales;family:Anaerolineaceae;genus:Anaerolinea;species:Anaerolinea thermophila; 0.85109857 0.823813657 216852 nhh Pseudomonas chlororaphis Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas chlororaphis; 0.950454069 0.974282957 0.978892456 0.955530044 0.983468684 0.982666107 0.908907928 0.916303426 0.943088182 0.960078299 0.997924752 0.953811706 0.919615312 0.910316477 0.850589521 0.94921193 0.960624249 320169324 gdh Capsaspora owczarzaki ATCC 30864 Nitrogen Ammonification NA superkingdom:Eukaryota;class:Ichthyosporea;genus:Capsaspora;species:Capsaspora owczarzaki; 1.082219446 1.01029901 1.046661121 1.061712865 1.025645712 1.020449078 1.034503561 1.040739195 1.041298159 1.022910431 1.04810847 1.088769307 0.977941852 0.964596636 0.971722493 1.003235351 1.013115231 0.991375814 118592783 bphc Stappia aggregata IAM 12614 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 0.851843856 0.860171934 0.984436361 0.878645744 0.873365228 0.888474589 0.860684163 0.795414411 0.860397174 0.881465019 0.819593176 0.868347701 0.914170904 0.843362896 0.829369313 0.872295657 0.952005314 0.870089578 395004104 cmci Acidovorax sp. CF316 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 0.872046389 0.880697402 0.871109445 0.894029997 0.904246107 0.813422262 0.811958125 0.904941669 0.891481759 0.863468063 0.823168724 0.792597354 0.881087438 0.832016937 0.915089686 0.928487512 224223697 rubisco Magnetospirillum sp. J10 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum; 1.039815375 0.963466404 1.031974545 1.050107116 1.0179002 1.020429456 1.024261347 1.00330109 1.021091605 0.993735002 1.029940039 1.036125118 0.961848346 0.950318593 0.93866247 0.959876515 1.014525415 0.961878021 338992148 dehh109 Acidiphilium sp. PM Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acidiphilium; 1.023782802 1.010747902 1.036982414 1.056649313 0.965684877 1.026028665 1.004484698 1.048102678 1.011817766 1.041149346 1.024055986 1.048675201 0.949560396 1.027456362 0.924076007 0.997277512 0.983415375 0.944034772 209965110 tktA Rhodospirillum centenum SW Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum centenum; 0.822594329 0.797451636 337739165 GAPDH_Calvin Oligotropha carboxidovorans OM5 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Oligotropha;species:Oligotropha carboxidovorans; 0.996462867 0.964846248 0.964526041 0.994340921 0.947103447 0.961774823 0.951829628 0.93435348 0.964386428 0.946006496 0.984059771 0.982636748 0.929252303 0.934475002 0.936093985 0.935761122 1.004747436 0.946423794 88808667 PRK Synechococcus sp. WH 7805 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 0.751644516 0.83180984 302926182 rgl Nectria haematococca mpVI 77-13-4 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Fusarium;species:Nectria haematococca; 0.936563097 0.943826764 0.876737163 0.936526149 0.845901581 0.890062902 0.837140861 0.871387047 0.94467406 0.946888694 0.888036909 0.90579748 0.850849146 0.919641148 0.836149245 0.885384594 0.938901833 0.936111952 365265833 amyA Actinomyces sp. oral taxon 849 str. F0330 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 849; 0.788994376 0.819127798 0.813677438 0.792304133 0.847828238 0.81678764 0.830314566 0.850846248 121610344 arylest Verminephrobacter eiseniae EF01-2 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 0.988247091 0.959796912 0.955825241 0.99839542 0.900380631 0.95335416 0.953079552 0.970986089 0.96416693 0.954390577 0.904321759 1.000356946 0.915180676 0.891119956 0.88087294 0.915475546 0.971685006 0.974423311 256800313 urec Streptomyces viridochromogenes DSM 40736 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces viridochromogenes; 1.038084404 1.025053674 0.982533477 1.002036603 0.971730557 1.011418487 0.983774536 1.004283521 0.987138464 0.988530485 0.994342901 0.977258413 0.986188503 0.98775536 0.974479049 0.978290141 1.016900483 1.029431836 89899144 proO Rhodoferax ferrireducens T118 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Albidiferax;species:Albidiferax ferrireducens; 0.769419657 0.951940649 383108277 amyA Spirochaeta africana DSM 8902 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Spirochaeta;species:Spirochaeta africana; 0.887146231 0.913404218 0.863709779 0.886144669 0.872280473 0.915170552 0.84436292 0.837094115 0.874681217 0.874433554 0.836909061 0.870762493 0.84070904 0.841512723 0.834516253 0.828090987 0.887601462 0.909040344 118706452 vana Sphingomonas wittichii RW1 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 1.094989319 1.046661119 1.076159977 1.055107852 1.081907884 1.110542841 1.07925313 1.067897605 1.073990865 1.091288581 1.101012312 1.081578805 1.045194039 1.072932475 1.072720799 1.064069133 1.064649409 1.107313022 347760651 vana Gluconacetobacter xylinus NBRC 3288 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter xylinus; 0.936043145 0.90577326 0.888973824 0.975713464 0.865218095 0.89561345 0.898579171 0.898355377 0.935036923 0.864978701 0.921098761 0.883327542 0.852920585 0.85993414 0.89095273 0.95139898 0.860011245 20092251 dsra Methanosarcina acetivorans C2A Sulfur sulfite reduction NA superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosarcinaceae;genus:Methanosarcina;species:Methanosarcina acetivorans; 0.823806593 0.814760894 38016628 nitrilase Klebsiella pneumoniae Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella; 1.082951569 1.059691215 1.054044415 1.074103405 1.038312492 1.034038944 1.022928704 1.017745241 1.065963911 1.024548323 1.04493245 1.040801571 1.036541244 1.006813757 0.935733611 0.987659014 1.078699603 1.039167518 88643464 dsrB uncultured prokaryote Sulfur sulfite reduction NA 1.047319003 1.044152769 1.022375878 1.0662646 0.999292938 1.024081881 1.023768775 1.011264235 1.047495113 0.984040442 1.037635934 1.049884219 0.988515308 0.996861344 0.96298827 1.017515454 1.044889601 0.998839755 126236583 phdk Mycobacterium sp. JLS Organic Remediation Polycyclic aromatics NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 0.9623612 0.982782082 0.938729426 0.971255064 0.926731094 0.963074812 0.927469845 1.023420905 0.94627144 0.961768808 0.906509078 0.942333806 0.965401385 0.917602578 0.936107943 0.94051892 0.973025445 0.981723863 183176263 cutinase Mycobacterium marinum M Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium marinum; 0.905243831 0.970518112 0.865894311 0.966702369 0.912052628 0.966864542 0.884365604 0.876715358 0.841447025 0.941674286 0.847415774 0.891373175 0.940518013 0.895775801 0.906816376 0.902760941 0.882476078 0.927867247 60326846 tpha Comamonas testosteroni Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas; 0.906546575 0.948980568 0.915829255 0.956015406 0.914263338 0.908300314 0.90815601 0.855755343 0.963978614 0.870517642 0.853089767 0.878694634 0.882182605 0.853156219 0.879916361 0.887743013 0.919406949 0.925355049 298293026 pgk Starkeya novella DSM 506 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Starkeya;species:Starkeya novella; 1.094405478 1.085871303 1.075359827 1.103827957 1.088531231 1.112882422 1.076871273 1.095551622 1.076894072 1.065461099 1.088600868 1.09866232 1.057994473 1.054721913 1.03214362 1.078104723 1.076531828 1.061051452 254271935 tfda uncultured bacterium Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria; 0.883595022 1.041571427 0.935731596 0.990781589 0.924494272 0.900457802 0.913329737 0.924914689 0.910009505 0.884724802 0.933703414 0.940514814 0.920436923 0.905575231 0.891687734 0.931822808 0.928713709 0.930298222 90954587 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.986173381 0.975460992 1.007970435 1.00983391 0.92678697 0.970332829 0.946143374 0.991691006 0.997511997 0.973661907 0.971290691 1.006197928 0.953459538 0.95879614 0.956084616 0.954481679 0.964748703 0.971403998 330823149 xylj Alicycliphilus denitrificans K601 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Alicycliphilus;species:Alicycliphilus denitrificans; 1.28281772 1.258133405 1.266093389 1.303985847 1.281546029 1.253204739 1.254808404 1.265534957 1.257854737 1.239672328 1.266482429 1.297891823 1.238390629 1.213982731 1.237160863 1.230926214 1.270528759 1.220598286 392437230 arsc Lactobacillus pentosus KCA1 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus pentosus; 0.951070531 0.938763919 0.916179859 0.947232582 1.01936327 0.925216477 0.912830035 0.929295223 0.949123757 0.937392285 0.943173745 0.897491122 0.911566694 0.909203522 0.851346842 0.887443087 1.009797362 1.000071635 182413155 RgaE Opitutus terrae PB90-1 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 1.174689314 1.186849766 1.148845046 1.157253446 1.150802596 1.207640185 1.151684983 1.154247019 1.14918511 1.154532678 1.161258067 1.155940749 1.141951222 1.16005985 1.147732336 1.158639788 1.19516108 1.180500078 359253597 FBPase Mesorhizobium alhagi CCNWXJ12-2 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium alhagi; 1.067312545 1.051124734 1.022079838 1.038974123 0.96906192 1.050200555 0.965417385 0.989507665 1.034089199 1.018235877 1.002901506 1.003508582 0.977424571 0.975103699 0.941476078 0.982042725 1.046597331 1.052677721 115516823 exaa(moxf) Rhodopseudomonas palustris BisA53 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 1.025770359 0.959057217 0.973407751 0.905570582 0.94066607 1.036649873 0.929055219 0.941440204 0.983474118 1.016031478 1.007948073 0.993043526 1.001236891 1.013145846 1.037103435 0.997572863 1.054043773 0.970869713 194292157 tfth Cupriavidus taiwanensis LMG 19424 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus taiwanensis; 1.157774851 1.074046115 1.09193416 1.167186013 1.10495046 1.093299016 1.09255437 1.106017876 1.146497613 1.065204128 1.086154369 1.120376647 1.111266551 1.02931693 1.087386218 1.067088738 1.150051118 1.034332579 359305739 nirb Arthrobacter globiformis NBRC 12137 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter globiformis; 0.833832029 0.971434021 0.950817632 0.968233959 1.003670481 1.066756508 0.98970795 0.874774787 0.91093678 0.99914759 0.933553699 0.859984441 1.022894631 0.913060545 0.947578119 0.877075128 1.049906782 337256261 chitinase Myxococcus fulvus HW-1 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus fulvus; 1.116988837 1.16249921 1.13538921 1.160807578 1.152075493 1.147684548 1.101589462 1.14429837 1.125940332 1.134793413 1.102914182 1.124897288 1.153892246 1.112078603 1.084832117 1.127025844 1.165566128 1.138208927 365292217 exaa(moxf) Bradyrhizobium sp. ORS 375 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 1.03995414 1.014464193 1.03923779 1.049351797 1.058092107 1.051816124 1.00847036 1.056362294 1.024910162 0.976928574 1.008670089 0.991815089 1.033167383 0.959308161 0.980098264 1.026485355 1.057723494 1.03680667 285017378 ppx Xanthomonas albilineans GPE PC73 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas albilineans; 0.758967608 0.830027077 0.762245423 0.78663012 82548050 catechol Nocardia sp. C-14-1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia; 1.278085607 1.284039046 1.230507912 1.253417364 1.245422195 1.26677724 1.21500406 1.24864573 1.209668698 1.221128869 1.230332022 1.249300304 1.223311166 1.212213109 1.211197317 1.239824087 1.242491067 1.234946995 211958217 linc Pseudovibrio sp. JE062 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 0.888004824 0.94717515 0.932250229 0.988727019 1.048991141 0.97048738 1.005007413 0.938433909 1.011550344 0.924137773 0.936997852 0.987439027 0.917037028 0.848929987 0.855461959 0.893275053 0.985784821 0.925954863 149832801 dsra Ruminococcus obeum ATCC 29174 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Blautia;species:[Ruminococcus] obeum; 1.099120567 1.039102638 0.991837189 1.027504132 0.989851763 0.965466494 0.989048601 1.02829674 1.05460934 0.98108523 0.960277117 1.022158864 0.94590684 0.954273892 0.911628128 0.966128039 1.01823186 1.043572112 296282701 amyA Citromicrobium bathyomarinum JL354 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Citromicrobium;species:Citromicrobium bathyomarinum; 0.841417996 0.921268244 0.902370443 0.904643535 0.907433191 0.910753093 0.931821621 0.930432006 0.847540187 0.853805982 0.953430725 0.917948058 0.831360721 0.821786139 0.861021717 0.94126909 91687663 mult_ring_12DiOx Burkholderia xenovorans LB400 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 0.964642769 1.035778183 0.993822504 1.004721879 1.001232274 1.023989465 0.975113434 0.965702933 0.948733343 1.021762347 0.957636975 1.033277611 0.989763001 1.001615309 0.963057915 1.029182362 0.999867108 1.029819264 259022030 exaa(moxf) Rhodobacter sp. SW2 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter; 1.024734283 1.076383468 1.001150949 1.031023925 1.016172419 1.042073538 0.979447442 1.005296289 0.981624137 0.993314923 1.0153903 1.047007235 0.988105833 0.965790995 0.983568144 1.008193503 1.026055506 0.991655749 198256358 amyA Verrucomicrobiae bacterium DG1235 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales; 0.946065248 1.044093605 1.014530227 1.02903737 0.981997691 1.050402541 0.943139944 1.032812169 0.957589553 0.972025199 0.937095035 1.075451244 0.944453148 0.965282662 0.98171189 0.964797533 0.999977781 1.043509393 229793172 ccmL Shuttleworthia satelles DSM 14600 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Shuttleworthia;species:Shuttleworthia satelles; 0.853475726 0.84104455 0.840327383 0.88601465 0.882728787 0.819089927 0.85518785 0.889484545 0.857858867 0.871487407 0.825294309 0.873584913 0.834829392 0.797908326 0.817749797 0.87467216 0.822630598 288867259 amyA Clostridium hathewayi DSM 13479 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hathewayi; 0.967839332 0.971331293 0.877935548 0.954096857 0.858269775 0.947328498 0.874170045 0.899372801 0.928185399 0.956858228 0.911795683 0.89521202 0.856680176 0.910996502 0.803824144 0.905358411 0.945823885 0.991367108 24984794 catechol Pseudomonas putida KT2440 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 1.118621404 1.118082092 1.08538424 1.078111568 1.061685085 1.101599587 1.046636602 1.069960548 1.072848542 1.078906727 1.065864135 1.086888621 1.032592745 1.059991945 1.017544969 1.056264756 1.095040853 1.092184851 302887308 phospholipase_A2_fungi Nectria haematococca mpVI 77-13-4 Carbon Cycling Carbon degradation Phospholipids superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Fusarium;species:Nectria haematococca; 0.816493629 0.832626979 0.796451553 0.843638804 0.80247875 0.796204969 0.865868289 256858049 tfdb uncultured bacterium Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria; 0.848730601 0.846421609 0.889967522 0.867427615 0.885048883 0.900272504 0.82167294 0.84276921 0.89304251 0.869310818 0.828079798 0.866104162 0.854459033 0.895048632 0.854360295 0.838681051 0.879178229 0.885297103 126707067 tktA Sagittula stellata E-37 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 0.832273729 0.893691857 0.850724467 0.891893808 0.835471834 0.851348781 0.824587463 0.896655905 0.895590139 0.922681932 0.871210347 0.87415136 0.832334123 0.845300647 0.928218018 0.846547033 0.919402423 0.898559959 391321075 cueo Shigella flexneri 1235-66 Metal Homeostasis Copper Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Shigella;species:Shigella flexneri; 1.053730011 1.071648415 1.048830392 1.093343397 1.074882656 1.045038151 1.052762556 1.063614375 1.111637246 1.061944216 0.979997115 1.048280966 1.048839982 1.02885732 0.998611767 1.029669624 1.080228921 1.042679949 112441908 mcra uncultured methanogenic archaeon Carbon Cycling Methane Methanogenesis superkingdom:Archaea;phylum:Euryarchaeota; 0.850098291 0.837730361 0.816438563 0.849704529 0.825215701 0.816921533 0.8165473 0.824376493 0.856089222 0.841500406 15186893 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 1.072666632 1.106559096 1.112063449 1.096807835 1.093178713 1.105707016 1.065778766 1.058927614 1.099588154 1.075833133 1.080976598 1.09764402 1.078707466 1.088160279 1.095783095 1.055880894 1.099991151 1.071267128 73660999 rd Dehalococcoides sp. CBDB1 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 0.941270868 0.910679403 0.912983297 1.009037662 0.903537985 0.964824148 0.992379038 0.984501623 0.93343027 0.881704146 0.929615334 0.936256087 0.903808932 0.893830913 0.87790341 0.890444811 0.963010432 0.913966333 304394505 pgk Ahrensia sp. R2A130 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ahrensia; 0.835700505 0.912463679 0.872914928 0.815412561 0.778360077 0.838398882 0.798015157 0.832682735 0.834458177 0.85402494 151562113 tktA Ochrobactrum anthropi ATCC 49188 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum anthropi; 1.209657036 1.160460421 1.02756946 1.073292608 1.038595648 1.089282097 0.965966817 1.079447349 1.076250337 1.045612862 0.981043969 1.039046038 1.025742372 1.032831162 1.146620923 1.029793129 1.055655501 1.125136099 41408718 narg Mycobacterium avium subsp. paratuberculosis K-10 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 1.067813978 1.121914237 1.081242161 1.065575353 1.114460032 1.131434668 1.064839856 1.036420584 1.058951208 1.102606174 1.114845216 1.112799693 1.078159125 1.0750422 1.044282644 1.077416735 1.105589626 1.083447805 218333148 phytase Hafnia alvei Phosphorus Phytic acid hydrolysis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Hafnia; 1.086444626 1.084185724 1.113363409 1.007321447 1.079939886 1.067106733 1.030023734 1.038690255 1.04877048 1.002976759 1.052535243 1.084067316 1.052780284 1.044412398 1.042212402 1.112337317 1.042961151 1.125545428 119859016 nitro Pseudomonas putida W619 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 1.021361695 0.961252838 0.948854582 0.980431315 0.937700866 0.989165203 0.932275396 0.952511226 0.991711745 0.959983534 0.970318444 0.957027053 0.913222624 0.98128868 0.938160514 0.975692162 0.997993669 0.963974041 256684855 mer Jonesia denitrificans DSM 20603 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Jonesiaceae;genus:Jonesia;species:Jonesia denitrificans; 0.871652016 0.881109222 0.875241171 0.910704235 0.913306125 0.885039355 0.913053834 0.929446135 0.912005502 0.875100397 0.883477856 0.893034056 0.868197317 0.834623465 0.913284262 0.850631301 0.884866976 0.848416799 91690047 tphb Burkholderia xenovorans LB400 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 0.979873805 0.976992769 0.838477876 0.847384134 0.875978692 0.896896778 0.84022592 0.849542141 0.836515772 0.845638452 0.922896555 0.914039998 0.837392307 0.810971938 0.852414827 0.923426359 0.860579171 327464764 ppx Neisseria bacilliformis ATCC BAA-1200 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria bacilliformis; 0.98189934 1.016201915 0.989005518 0.954517217 0.974480215 0.987170684 0.972584851 0.93544344 0.9516971 0.967193932 0.965405862 0.960744926 0.961835632 0.971096633 0.921048881 0.933196096 0.982519165 1.000403398 23494737 pcpe Corynebacterium efficiens YS-314 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium efficiens; 0.88751504 0.856945817 0.859658455 0.882116563 0.845894042 0.904233028 0.846185279 0.869140939 0.892570927 0.818564272 0.832637261 0.822355493 0.82631668 0.807615372 0.8082485 0.909087667 0.880519232 99083341 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.870563965 0.919683981 0.825834031 0.852147908 0.867894579 0.860465727 0.838840913 0.823724705 0.841224363 0.855458003 0.852812321 0.850543106 0.863910406 0.87701875 0.861541357 0.853021847 0.828898892 0.895773412 377537802 gdh Mobilicoccus pelagius NBRC 104925 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dermatophilaceae;genus:Mobilicoccus;species:Mobilicoccus pelagius; 1.262908333 1.286919972 1.241666955 1.236162633 1.241147312 1.317894504 1.249137211 1.265990464 1.231643049 1.241792507 1.255175827 1.238447148 1.242229307 1.21303641 1.202792883 1.22990358 1.288244747 1.244207262 78172075 soxY Chlorobium chlorochromatii CaD3 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium chlorochromatii; 0.800637506 0.782355957 0.820881483 0.803816435 89068306 ppx Oceanicola granulosus HTCC2516 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola granulosus; 0.914572593 0.864091393 0.890097282 0.94729528 0.879028949 0.912522668 0.889334682 0.916046906 0.873242882 0.901947955 0.873614073 0.871570407 0.813113736 0.84697808 0.851621744 0.87180805 223986886 amyA Holdemania filiformis DSM 12042 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Erysipelotrichia;order:Erysipelotrichales;family:Erysipelotrichaceae;genus:Holdemania;species:Holdemania filiformis; 0.922669469 0.944441017 0.912412394 0.919617989 0.901178927 0.881852802 0.915714694 0.911952984 0.917891004 0.89612682 0.891241925 0.912615956 0.912858302 0.89751106 0.892453731 0.883869374 0.888020822 0.936577354 1002869 exaa(moxf) Paracoccus denitrificans Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus; 1.045793898 1.103158566 1.047838049 1.036810389 1.025093734 1.062240709 1.003352508 1.010937454 1.032039524 1.033562119 1.048340245 1.012937429 1.020686417 1.025609576 1.019111918 1.03550744 1.074939372 1.035246783 299798750 rgl Amycolatopsis mediterranei U32 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 1.015708553 1.027135742 0.989444354 1.02438466 0.995117441 0.992205384 0.973082963 0.983124118 1.000078017 1.002428506 0.9419912 0.997936724 0.946773773 0.941500023 0.941286189 0.921845964 0.993279861 1.025232628 134291838 limeh Burkholderia vietnamiensis G4 Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia vietnamiensis; 1.176560281 1.197900944 1.165953171 1.122092835 1.15169855 1.193997256 1.154428862 1.13566874 1.14691508 1.147124651 1.169383406 1.145270113 1.157435072 1.1186549 1.09931494 1.151045767 1.173527351 1.154026945 305857432 pectinase (pectate_lyase) Paenibacillus polymyxa E681 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus polymyxa; 0.837065896 0.761172589 42541215 chitinase uncultured organism Carbon Cycling Carbon degradation Chitin 1.015612253 1.009967112 0.957268929 1.015023054 0.96179355 0.987371548 0.994225001 1.002811472 0.983772049 0.987903116 0.960086456 1.029857975 0.913483344 0.948779292 0.903882279 0.916406156 1.01977518 1.033873512 359314961 vana Gordonia polyisoprenivorans NBRC 16320 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia polyisoprenivorans; 1.042382027 1.019140523 1.019443245 0.985658708 1.008031848 1.047550413 1.012236127 1.014439581 0.999337197 1.004596162 0.992347275 1.002763859 0.996905128 0.980467709 0.998356301 0.944912898 1.024388919 1.027659082 146310103 amyA Enterobacter sp. 638 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 0.900656341 0.917037722 0.900081527 0.894552339 0.903294875 0.856028538 0.845338229 0.812289796 0.940149374 0.867187751 0.833274659 0.875925222 0.848826718 0.873472134 0.843860021 0.823639755 0.904282073 0.957776306 255258525 soxY Sideroxydans lithotrophicus ES-1 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Gallionellales;family:Gallionellaceae;genus:Sideroxydans;species:Sideroxydans lithotrophicus; 0.89252288 0.870488209 0.865273692 0.922862899 0.913385804 0.794809781 0.89145937 0.9423542 0.912150019 0.862159495 0.903113093 0.922037444 0.880768578 0.823523079 0.872347986 0.851004524 0.850693365 0.873891067 74038486 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.952671147 0.915045426 0.872329731 0.910326047 0.867371444 0.876495573 0.875383761 0.874634682 0.8887849 0.906685865 0.881419613 0.903865066 0.865534338 0.862211506 0.836129053 0.910450322 0.92336719 0.875444127 170027467 napa uncultured bacterium Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria; 0.850841042 0.861577377 0.828196176 0.834497249 0.794336334 0.834400387 0.808932535 0.834145061 0.90316958 94471177 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.069853852 1.047359443 1.044034261 1.132709417 1.023880265 1.066421994 1.042204331 1.081345218 1.079934635 1.053132635 1.034039397 1.066108351 1.029597059 1.037650271 0.990852697 1.042031824 1.094580343 1.063634177 260223415 atzb Curvibacter putative symbiont of Hydra magnipapillata Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Curvibacter; 1.029965808 0.998743156 0.992189823 1.02416483 1.003066793 0.998088847 1.042513724 1.025238087 1.009164859 0.963823925 1.020083342 1.003542128 0.976710294 1.00082896 0.997694381 0.960970405 1.010821396 0.978775626 146276053 mdla Novosphingobium aromaticivorans DSM 12444 Organic Remediation Aromatics Aromatic alpha hydroxy acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium aromaticivorans; 0.998204593 0.978475734 0.987730221 1.020478361 1.0059319 0.987978023 1.019317035 1.023395085 1.021239006 0.989775631 1.007340612 0.999671692 0.954022442 0.945878389 0.948315609 0.9751457 1.006054124 0.990719943 167364645 ppx Rhodopseudomonas palustris TIE-1 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 0.952918991 0.968434438 0.931638534 0.928180941 0.928273266 0.933868519 0.913826117 0.927548974 0.913439206 0.93510201 0.931439978 0.932182777 0.901428358 0.88440996 0.865682669 0.852296316 0.941002336 0.953963419 360038705 pcpe Ralstonia pickettii Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 1.07756397 1.097188203 1.086234046 1.066098219 1.064210265 1.084461431 1.048401509 1.040331403 1.011531994 1.058250722 1.040686294 1.041148278 1.078925836 1.039847602 1.00713582 1.044114754 1.090005458 1.048386939 374656342 vgb Saccharomonospora marina XMU15 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora marina; 1.090971307 1.112771593 1.035764373 1.158473862 1.104764607 1.139904499 1.112324942 1.080720339 1.124101825 1.11315632 1.098383448 1.136118952 1.071881052 1.089407947 1.046724526 1.122159261 1.104900053 1.104073277 239831741 phn Ochrobactrum intermedium LMG 3301 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum intermedium; 0.987725981 0.992565365 0.98890075 0.982056249 0.967524133 0.962047606 0.977953452 0.961451367 0.932384402 0.973086706 0.951444321 0.945526352 0.932873797 0.940032971 0.843649844 0.884417714 0.985536949 1.010387417 148656691 catechol_b Roseiflexus sp. RS-1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus; 0.798589069 0.782609779 333989772 bphd Mycobacterium sp. JDM601 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 0.872697053 0.876331116 0.894185577 0.890720456 0.913149392 0.902417621 0.934362291 0.91764551 0.908565377 0.910560674 0.958420493 0.90255833 0.866656273 0.896000229 0.850449553 0.884322136 0.926228685 0.92463307 13422880 arsc Caulobacter crescentus CB15 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter vibrioides; 1.167263257 1.135824743 1.133807604 1.129435323 1.107826166 1.12664025 1.082891526 1.112341074 1.110875626 1.099764736 1.106538182 1.110859758 1.083013063 1.088728166 1.065007183 1.073040956 1.13269246 1.133832381 335424632 mer Salinisphaera shabanensis E1L3A Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Salinisphaerales;family:Salinisphaeraceae;genus:Salinisphaera;species:Salinisphaera shabanensis; 0.906001767 0.851077239 0.919392072 0.957122189 0.919139086 0.866187212 0.904152885 0.944539068 0.930236589 0.889112648 0.87735346 0.904036873 0.859542912 0.826265233 0.867402903 0.92683095 0.867147692 71395626 one_ring_23diox uncultured bacterium Organic Remediation Aromatics Other aromatics superkingdom:Bacteria; 1.015408139 0.937150833 0.924789524 0.919132061 0.93023968 0.950165138 0.911591038 0.914801699 0.91345616 0.948083166 0.895584062 0.9769686 0.895254229 0.900259549 0.798152797 0.862521446 0.912437006 0.938244161 386382313 amyA Streptomyces tsukubaensis NRRL18488 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces tsukubaensis; 1.214239476 1.177116452 1.130415582 1.148622488 1.137854352 1.178555464 1.143765885 1.151862172 1.126682393 1.170517092 1.153432664 1.143091194 1.109684851 1.166885221 1.082860458 1.122335017 1.167635116 1.165982822 323385280 PRK Burkholderia sp. CCGE1001 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 1.12000832 1.112357478 1.074588882 1.097841592 1.051197815 1.09992698 1.041435235 1.057565945 1.093520614 1.092165715 1.080545076 1.053607825 1.046487216 1.094610673 1.03184287 1.087701932 1.107053897 1.097823771 336426418 amyA Lachnospiraceae bacterium 3_1_57FAA_CT1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae; 0.811666938 0.877426569 0.855895931 0.817515213 0.818403105 0.808966598 0.851133767 0.85554276 0.844447708 0.805208802 0.840218076 0.787907997 0.836677117 84779015 Sir Sodalis glossinidius str. 'morsitans' Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Sodalis;species:Sodalis glossinidius; 1.292477008 1.210661797 1.258479202 1.239910427 1.25325434 1.269492573 1.272696304 1.212877141 1.204906735 1.216498245 1.204472129 1.207938966 84389695 chrr Oceanicola batsensis HTCC2597 Metal Homeostasis Chromium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola batsensis; 1.103144408 1.043084288 1.098877859 1.223592699 1.042496915 1.004435929 1.032763436 1.053474213 1.057909049 1.042276514 1.067050756 1.062545913 1.067143752 0.998018338 1.005753132 1.011532602 1.051632121 1.070598002 291303397 phytase Stackebrandtia nassauensis DSM 44728 Phosphorus Phytic acid hydrolysis NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Glycomycetaceae;genus:Stackebrandtia;species:Stackebrandtia nassauensis; 1.04687002 1.00477344 1.031989624 1.029171496 1.030060914 1.037150863 1.014816652 1.006626691 1.02839461 1.045878576 1.025850279 1.034300096 0.958984165 0.966974266 0.894517777 0.954759123 1.011894322 0.999704839 259017119 nifh uncultured microorganism Nitrogen Nitrogen fixation NA 1.038805545 0.986217174 0.934293433 1.065674347 0.919745548 0.998426161 0.935910857 1.021445038 1.027047491 0.989534095 0.942376882 0.988051149 0.893899992 0.946459556 0.9240772 0.990649134 1.05105809 0.99159248 383641593 ppx Sphingomonas elodea ATCC 31461 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas elodea; 0.908742557 0.898885356 0.846433817 0.871619621 0.831209942 0.836250024 0.835807858 0.819533853 0.860049477 0.864061047 0.836284054 0.832265298 0.877966987 0.912973577 197288186 arylest Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 1.023768467 0.974613853 1.041102222 0.964157545 0.980930891 0.968209234 0.944725822 0.975536448 0.956205682 0.946875366 0.952621256 0.997225514 0.957321567 0.974812106 0.910524337 0.989188523 1.066090991 1.015704449 144581924 actin_Viridiplantae Ostreococcus lucimarinus CCE9901 Other Phylogenetic NA NA 0.85547785 0.775677846 0.819266459 0.826156375 0.840340953 0.885323964 0.861476884 0.816539999 0.836538388 0.892564575 0.813843503 0.849111958 0.821045388 0.824748338 0.798944232 0.790571555 0.836269356 0.872181565 119958381 limeh Mycobacterium vanbaalenii PYR-1 Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 0.785775069 0.794172644 0.800468217 0.803236388 0.791122445 0.789046335 0.83575146 346970842 axe Verticillium dahliae VdLs.17 Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticillium;species:Verticillium dahliae; 1.318691335 1.286950617 1.266235978 1.28786235 1.268259492 1.284523809 1.262668494 1.269531145 1.258842623 1.268679057 1.261784273 1.264350544 1.220713211 1.220097041 1.189423294 1.229798462 1.31058083 1.287145085 337749866 rgh Paenibacillus mucilaginosus KNP414 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 0.90962934 0.934492648 0.888415379 0.91908039 0.944986463 0.909357726 0.840007512 0.881689012 0.88016681 0.907573225 0.884597762 0.873942917 0.896866118 0.883162708 0.942333334 0.883643103 0.940078769 0.949162283 157285610 napa uncultured bacterium Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria; 0.803501765 0.805996463 0.804520988 118730373 arsc Delftia acidovorans SPH-1 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 1.0439248 1.052575932 0.995215005 0.996817223 0.968822476 1.048304721 0.981321756 1.008201141 0.988279719 1.007793219 1.00478132 0.990975491 0.914793423 1.015045978 0.88703042 0.955366598 1.004309919 1.057445998 239812888 amoa uncultured crenarchaeote Nitrogen Nitrification NA superkingdom:Archaea;phylum:Crenarchaeota; 0.922347482 0.945105628 0.890008787 0.939869218 0.925360765 0.989489038 0.932523379 0.91720195 0.941241195 0.849933561 0.843080151 0.862621774 0.910595996 0.85215546 0.865683512 0.932205778 0.967262061 115421694 bphF1 Bordetella avium 197N Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella avium; 0.90892543 0.899343653 0.918187101 0.905251253 0.91264041 0.929978614 0.908695058 0.846782817 0.913069721 0.933567163 0.904509315 0.924917102 0.84005747 0.839265288 0.82966163 0.861476741 0.920224145 0.929047861 328451846 mer Marinithermus hydrothermalis DSM 14884 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Marinithermus;species:Marinithermus hydrothermalis; 0.810002524 0.914877192 0.854803652 0.831347337 0.903535799 0.841031842 0.830672457 0.847488577 0.876328907 0.836255286 0.934472296 76058085 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.830978023 0.835839079 0.800783068 0.781067927 0.8236535 0.787628934 0.805277848 0.791477767 240015434 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.94241536 0.95599397 0.927417131 0.923869269 0.910278089 0.908641799 0.854413906 0.846957005 0.911539485 0.928879663 0.903335423 0.906200614 0.899443166 0.908329186 1.015114309 0.921369868 0.916745414 0.938663077 323452335 mer Aureococcus anophagefferens Metal Homeostasis Mercury Detoxification superkingdom:Eukaryota;class:Pelagophyceae;genus:Aureococcus; 1.06870557 1.071369287 1.012907092 1.06665956 1.090762106 1.066802821 1.061554973 1.008773124 1.054981782 1.059937909 1.045803296 1.07544165 1.046989327 1.019175127 1.032909333 1.03066952 1.050653867 1.058981187 374293595 norb Azospirillum lipoferum 4B Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum lipoferum; 1.013767964 0.947277701 0.987376861 1.064479643 1.050705562 1.008345567 1.033882991 1.063626768 1.056545751 0.976898806 1.002521229 1.03092545 0.983823753 0.931988655 0.985840174 0.975259231 1.040707735 0.987711829 311312270 linb Aeromicrobium marinum DSM 15272 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Aeromicrobium;species:Aeromicrobium marinum; 1.013590934 0.999887239 1.075315591 1.015565123 0.994489106 1.002266036 0.998301721 0.990229769 0.999225021 1.019123041 0.983411034 1.029630134 0.97818142 0.978502053 0.963548858 0.990192331 1.004194439 1.013605788 377564548 pcag Gordonia sputi NBRC 100414 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia sputi; 0.879172088 0.82420569 0.837226196 0.888536196 0.830869064 0.850496138 0.880456947 0.861588142 0.862421291 0.865557074 0.848911657 0.82479737 0.845191515 0.85032043 338233265 SoxC Bradyrhizobiaceae bacterium SG-6C Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae; 1.312469571 1.278575404 1.276667423 1.275793267 1.259644845 1.300451004 1.260803956 1.267504397 1.277548832 1.288784864 1.265948589 1.29219264 1.244182718 1.237058006 1.209383878 1.253903014 1.276008623 1.265419466 302526901 amyA Streptomyces sp. AA4 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 1.217930989 1.200434471 1.229506406 1.265906538 1.22164289 1.217274799 1.239459487 1.257337766 1.226892749 1.196847814 1.22013376 1.226321779 1.241032749 1.17516188 1.217266806 1.193825377 1.238857278 1.159258366 399017078 mdlc Herbaspirillum sp. CF444 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herbaspirillum; 1.09901953 1.079096649 1.076673925 1.123648317 1.068068801 1.095470628 1.066249282 1.074094086 1.072939577 1.042621862 1.065850042 1.088195712 1.080734899 1.082443515 1.049133689 1.058296331 1.106832305 1.05422636 70671751 pmoa uncultured bacterium Carbon Cycling Methane Methane oxidation superkingdom:Bacteria; 1.172420777 1.126482998 1.15669157 1.16412722 1.147905476 1.193754642 1.129441318 1.15752827 1.155737883 1.09373106 1.103314075 1.175735296 1.109920844 1.089034363 1.115041138 1.130457952 1.124563744 1.109700909 329575556 rgl Paraprevotella xylaniphila YIT 11841 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Paraprevotella;species:Paraprevotella xylaniphila; 1.195818485 1.189112174 1.185590995 1.21596498 1.188435567 1.19733316 1.214428972 1.176735972 1.181636849 1.158168807 1.172973719 1.188309518 1.157466797 1.12752818 1.147487156 1.154453578 1.179593092 1.145653704 325964840 catb Arthrobacter phenanthrenivorans Sphe3 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter phenanthrenivorans; 0.797944975 0.838009312 0.835480966 0.838831404 0.803096258 0.812539295 0.850652924 0.860552855 300111343 axe Schizophyllum commune H4-8 Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 1.112531997 1.067659096 1.092151215 1.13733226 1.071685376 1.102112886 1.105921778 1.105951467 1.117054805 1.068032931 1.059286695 1.10729252 1.046078579 1.037286921 1.0355557 1.057078977 1.105719927 1.087804357 195537609 dsrB uncultured bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.791788701 0.831443069 0.796612452 0.783921753 260420540 FBPase Citreicella sp. SE45 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Citreicella; 1.036150263 1.008469782 1.007293411 0.979319916 0.901870383 0.954115557 0.917546667 0.963555415 1.003814622 0.951137076 0.953368456 0.998738553 0.90617048 0.919789531 0.945952081 0.914059141 0.989185304 1.024875522 170027495 napa uncultured bacterium Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria; 0.907451435 0.959430778 0.899099696 0.942134765 0.924665287 0.912896366 0.901697271 0.914564874 0.930158682 0.94213554 0.863371285 0.893070685 0.855729372 0.861369252 0.827971506 0.950485415 0.953747304 85704211 dmdA Roseovarius sp. 217 Sulfur DMSP degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 0.809564681 0.827236466 0.803342135 0.795311417 0.814035293 0.805126413 0.804501676 0.852828818 0.782946345 0.814426005 117928580 amyA Acidothermus cellulolyticus 11B Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Acidothermaceae;genus:Acidothermus;species:Acidothermus cellulolyticus; 1.042065846 1.006246156 0.99801763 1.027633712 0.982860063 1.044455052 1.03535139 0.997645965 1.0234164 1.021429608 0.976511 1.008904448 0.98308733 0.994104637 0.967594205 0.986083157 1.034636749 1.025482287 145319513 xylanase Enterobacter sp. 638 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 1.111622341 1.09989041 1.072587153 1.113691355 1.080648759 1.107117979 1.055232389 1.076748977 1.068847371 1.049980417 1.037112072 1.064962395 1.039498822 1.038875398 1.023511131 1.073327473 1.106112545 1.081999893 89899153 poba Rhodoferax ferrireducens T118 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Albidiferax;species:Albidiferax ferrireducens; 0.878850768 0.83568889 0.827345698 0.806641552 300103689 protease_cysteine_fungi Schizophyllum commune H4-8 Carbon Cycling Carbon degradation protein superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 0.951495801 0.932117413 0.921959309 0.915979431 0.923005566 0.927722137 0.945004949 0.939747485 1.111501522 0.899287746 0.915853377 0.915022436 0.919800002 0.880999925 0.875612337 0.825339477 0.91903498 0.953388484 14090318 dsrB Desulfovibrio longus Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 1.01387901 0.987080605 1.008680046 1.04679156 1.012281254 1.083920001 1.011418223 1.051085769 1.02756253 1.030178046 0.968906444 1.001720428 1.006577107 1.013068374 1.043922384 0.986372329 1.035789785 1.005478384 88799829 poba Reinekea sp. MED297 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Reinekea;species:Reinekea blandensis; 1.080628057 1.013701952 1.077293868 1.114243623 1.057672369 1.077268896 1.073948647 1.074579765 1.102369728 1.049903919 1.07396687 1.044069428 1.049350113 0.99752357 0.99385839 1.012934837 1.104899439 1.054348318 76164407 linb Chloroflexus aurantiacus J-10-fl Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aurantiacus; 0.840260526 0.802848373 0.823211978 0.827230674 0.828590234 0.823437485 0.844515252 0.872698495 0.84826126 0.842398596 258619013 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.881785061 0.934114955 0.8204243 0.915542583 0.833830348 0.846376307 0.899902041 0.865241703 0.877599112 0.889303958 0.856968719 0.921003656 0.909782398 86749460 b_lactamase Rhodopseudomonas palustris HaA2 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 1.012803431 1.046972173 0.992488191 1.068608996 1.01041181 1.033262839 1.003185714 1.007330666 1.072387123 1.035484767 1.005303181 1.025105688 0.999516184 1.029182637 0.987169072 0.968247532 1.051936921 1.028745163 407300052 xylg Nitratireductor pacificus pht-3B Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Nitratireductor;species:Nitratireductor pacificus; 0.911361397 0.913874056 0.917461323 0.926729964 0.906057174 0.921574066 0.829226821 0.89199367 0.936999427 0.844030551 0.961290594 0.933950283 0.868330713 0.88245604 0.958437086 0.892946786 0.937567988 0.960652617 209486089 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.270849051 1.228141206 1.234510845 1.287951208 1.226371677 1.283561831 1.247216932 1.275069435 1.260230765 1.235523741 1.210120788 1.258085097 1.230199472 1.200251915 1.20962383 1.237111072 1.271977291 1.237025263 224612976 dsrB Thermodesulfatator atlanticus Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Thermodesulfobacteria;class:Thermodesulfobacteria;order:Thermodesulfobacteriales;family:Thermodesulfobacteriaceae;genus:Thermodesulfatator; 0.811020866 0.823781679 0.838506922 374602373 terc Paenibacillus dendritiformis C454 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus dendritiformis; 1.161653872 1.008722408 1.056281105 1.093899003 1.040551507 1.02652524 1.001935847 1.026640605 1.077190659 1.001655288 1.012646959 1.052122819 1.012948917 1.011467583 0.959724021 1.035707069 1.045625342 1.093509258 226292931 cutinase Paracoccidioides brasiliensis Pb18 Carbon Cycling Carbon degradation Cutin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;genus:Paracoccidioides;species:Paracoccidioides brasiliensis; 0.937994605 0.785924211 0.841970495 0.806614361 0.781443671 0.862534432 0.816315512 226357588 cmci Deinococcus deserti VCD115 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus deserti; 0.949621442 0.96789585 0.952223963 0.972625182 0.936359924 0.973035642 0.968296224 0.97239331 0.944843722 0.936884789 0.973380747 0.939454992 0.961652702 0.911054977 0.935225882 0.899225286 0.949021732 0.945041193 62896436 metc Pseudomonas fluorescens Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.96809195 0.912634494 0.917096697 1.000916571 0.900071858 0.895022034 0.921152257 0.946761418 0.981784452 0.899059249 0.924873476 0.963902617 0.891294271 0.878920372 0.854015281 0.911143377 0.966347267 0.927533024 189188556 endopolygalacturonase_fungi Pyrenophora tritici-repentis Pt-1C-BFP Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 0.845971182 0.900734097 0.846977187 0.926693216 0.862432497 0.81184328 0.849550623 0.867669168 0.835410484 0.803192551 0.878732536 0.783147252 0.82619654 0.883991403 0.9155139 247545282 xylanase Paenibacillus sp. JDR-2 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 0.894478937 0.812518011 0.876230328 0.921874915 0.803953558 0.957476969 0.953450356 0.859349871 0.875156818 0.853502051 0.882190468 0.852836745 156740258 chitinase Roseiflexus castenholzii DSM 13941 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus;species:Roseiflexus castenholzii; 0.765557247 0.802452057 0.828100747 0.811161816 0.805518984 0.812541571 0.788053005 0.86007486 0.819143501 0.818321708 0.832153118 171912080 RgaE Verrucomicrobium spinosum DSM 4136 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobiaceae;genus:Verrucomicrobium;species:Verrucomicrobium spinosum; 0.832156488 0.848916685 0.884663237 0.856067056 0.805049958 0.848886727 0.891120988 0.789995405 0.8773708 0.839080669 0.826962083 343919179 GAPDH_Calvin Thiorhodococcus drewsii AZ1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiorhodococcus;species:Thiorhodococcus drewsii; 1.163346309 1.130292362 1.171480088 1.150908633 1.133976268 1.15326084 1.144052197 1.14859815 1.14603372 1.122653412 1.14156237 1.16674898 1.12418089 1.1023145 1.097758837 1.109320519 1.170863903 1.1062701 375096269 catechol_b Saccharomonospora marina XMU15 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora marina; 1.241173568 1.196193513 1.132480992 1.206008855 1.148199668 1.190408838 1.161951576 1.147973447 1.136523559 1.141784692 1.136027993 1.143071513 1.133585129 1.161727062 1.117429669 1.164200462 1.176228374 1.165768532 308159637 hsp90_Fornicata Giardia lamblia P15 Other Phylogenetic NA superkingdom:Eukaryota;family:Hexamitidae;genus:Giardia;species:Giardia intestinalis; 0.875265993 0.913909479 0.898836696 0.916637317 0.891647163 0.946542181 0.87249765 0.865745188 0.844747399 0.896146237 0.892590284 0.872868173 0.883264444 0.874707915 0.927282476 0.876169687 0.937003746 0.909432964 52347573 Sir Bacillus licheniformis ATCC 14580 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus licheniformis; 1.151975794 1.11262203 1.132254713 1.127875005 1.114451903 1.160199892 1.13885613 1.124536856 1.12706237 1.129050524 1.075353921 1.106097027 1.114883271 1.115101482 1.080208182 1.081277342 1.140539872 1.134065022 52005547 xyla Bacillus licheniformis ATCC 14580 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus licheniformis; 0.933453181 0.945301698 0.985140357 0.895647752 0.858840038 0.937713508 0.829673774 0.89146011 0.928003181 0.922816815 0.885101328 0.894173793 0.834477447 0.90916646 0.912380898 0.878064069 0.92564757 0.968084117 88866014 rd Jannaschia sp. CCS1 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Jannaschia; 1.004837852 1.012524056 0.987575838 1.010431837 0.953012957 0.994456174 0.962646037 1.056352125 1.034530745 0.977302784 0.983803077 0.991529309 0.937008446 0.968729928 0.907325987 0.960762997 1.016278888 1.023770942 404251762 B_lactamase_A Sphingomonas sp. PAMC 26621 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 1.084949083 1.022041181 1.116095449 1.078864882 1.043131463 1.113599047 0.984419287 1.056766678 1.05062069 1.021991374 1.14342485 1.065175112 1.034428816 1.00926915 1.067231066 1.058032633 1.09062526 1.064682049 354959399 chnb Bradyrhizobium japonicum USDA 6 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 0.930488716 1.023423611 0.946974966 1.014441284 0.995651387 0.810618975 0.88180855 0.899423777 0.940571869 0.954548867 0.985425723 0.983697267 0.930908332 0.863126322 0.864644188 0.909592487 0.928717234 0.914305875 319942517 FBP_aldolase Sutterella wadsworthensis 3_1_45B Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Sutterellaceae;genus:Sutterella;species:Sutterella wadsworthensis; 0.872140674 0.84907052 0.864329998 0.96232574 0.901338613 0.88869353 0.920040176 0.941356258 0.899170233 0.824741842 0.925594236 0.886218284 0.826400727 0.805947776 0.829967335 0.876344771 0.9089151 315925376 CsoS1_CcmK Pseudoramibacter alactolyticus ATCC 23263 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Eubacteriaceae;genus:Pseudoramibacter;species:Pseudoramibacter alactolyticus; 1.300540823 1.28273204 1.284161512 1.240691293 1.247969506 1.292307727 1.239511293 1.315946622 1.271468266 1.284044877 1.269933668 1.262045375 1.252528277 1.254554659 1.246413765 1.241617486 1.268699769 1.294255089 325568625 cda Enterococcus casseliflavus ATCC 12755 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Enterococcaceae;genus:Enterococcus;species:Enterococcus casseliflavus; 0.779552058 0.87004905 0.796449019 0.844487411 0.863162027 0.866354972 0.858414807 0.833623997 0.774432654 0.846060992 149782997 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.051286028 1.037931 0.96598584 0.984621299 1.082631289 1.085771654 1.027382888 0.975715738 0.9374388 0.979328962 0.887141769 0.931254886 1.024514524 0.939542278 1.044374202 1.015759872 1.016723001 1.089730032 325914412 trze Xanthomonas vesicatoria ATCC 35937 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas vesicatoria; 0.859719108 0.911522503 0.879991734 0.878833836 0.864954675 0.897332518 0.829180896 0.808359838 0.85422138 0.831888321 0.865596382 0.857975117 0.848492422 0.84712315 0.826052552 0.882380198 0.911232064 196233226 amyA Chthoniobacter flavus Ellin428 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Verrucomicrobia;class:Spartobacteria;genus:Chthoniobacter;species:Chthoniobacter flavus; 0.910663444 0.904429742 0.870222015 0.896008142 0.947662032 0.88569208 0.871336342 0.92036045 0.948082112 0.875414378 0.886290907 0.883835106 0.837429905 0.821077706 0.862756277 0.836642043 0.882744718 0.894178469 156254587 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.995505685 1.012719824 1.021446986 1.018053392 1.018513203 1.054796538 1.015737967 1.033447064 0.975824113 1.0029095 1.004564601 0.966605859 0.956559588 0.93686271 0.947268859 0.957721405 1.007544057 1.038233161 218677040 amyA Vibrio splendidus LGP32 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio splendidus; 0.87807154 0.909418947 0.921765062 0.908103777 0.869069084 0.842017935 0.836780477 0.894159178 0.827372434 0.831699401 0.850088298 0.885344761 0.81664525 0.839689182 0.891419564 0.918618137 0.902485787 29605369 amyA Streptomyces avermitilis MA-4680 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 1.190755921 1.180796692 1.161553556 1.146420427 1.160180501 1.188706611 1.172125379 1.177176761 1.136472947 1.130039645 1.135219542 1.143950995 1.150458693 1.109712905 1.101116108 1.090946135 1.142155608 1.139897864 329851654 alginase Asticcacaulis biprosthecum C19 Carbon Cycling Carbon degradation Alginate superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis biprosthecium; 1.017753986 0.962664999 1.001090747 1.033204874 1.077906122 1.005339258 1.041759941 1.020159197 1.056553543 1.010783948 1.021466274 1.075916217 1.063821699 1.015386089 1.074574655 1.009480288 1.01692705 1.018376198 328803714 cysI Aeromonas veronii B565 Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas veronii; 0.802342748 0.835027642 0.861647115 0.837405234 0.833292194 0.824011566 0.824825302 0.795958371 0.800708185 0.84114298 0.854386608 315313945 terc Actinomyces sp. oral taxon 180 str. F0310 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 180; 1.246610995 1.265864614 1.231744691 1.236710765 1.265677658 1.287459444 1.234428001 1.228544732 1.229380977 1.247939445 1.267018906 1.266965018 1.25055369 1.241682242 1.238100753 1.268679957 1.254941538 1.252840574 211587109 exoglucanase Penicillium chrysogenum Wisconsin 54-1255 Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 0.918113888 0.943220173 0.936017512 0.905769993 0.908595172 0.83674128 0.870240598 0.921343125 0.877612036 0.947695707 0.855432232 0.867510254 0.905159496 0.943148369 284041573 linb Conexibacter woesei DSM 14684 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Solirubrobacterales;family:Conexibacteraceae;genus:Conexibacter;species:Conexibacter woesei; 0.826666872 0.870758657 0.838106277 0.80834428 0.850561705 0.827370463 0.864259856 0.911604991 0.834770113 0.836548965 0.831701024 0.829212909 0.806063637 0.897820095 112358843 one_ring_23diox Rhodococcus aetherivorans I24 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus aetherivorans; 0.834009383 0.801537783 0.805303379 0.834137129 0.797735801 0.807537149 0.794428045 184200251 catechol Kocuria rhizophila DC2201 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Kocuria;species:Kocuria rhizophila; 1.168492047 1.16207877 1.156696787 1.18459454 1.133148758 1.174519599 1.155975276 1.182412053 1.160986725 1.146067565 1.140976788 1.165438378 1.119583184 1.136959417 1.112083781 1.139779567 1.152980775 1.138740247 333489684 Sir Serratia sp. AS12 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia; 0.811917804 0.830413454 144899168 ppk Magnetospirillum gryphiswaldense MSR-1 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum gryphiswaldense; 0.948518992 0.993999468 0.951550031 0.946198505 0.996150708 1.008816957 0.967294617 0.960277133 0.960674146 1.028630095 1.031281633 0.981943018 0.944593368 0.955886861 0.892219235 0.927244135 1.012435698 1.019239329 313140002 terc Bifidobacterium bifidum NCIMB 41171 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium bifidum; 0.853043659 0.828560387 0.865336341 0.888226895 0.874423427 0.899975241 0.895525827 0.894838532 0.881469752 0.824296468 0.874922384 0.836641134 0.840115827 0.805238379 0.87308142 0.869175607 335865015 arsc Shewanella sp. HN-41 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella; 0.815460133 0.842612717 163761230 ben_bcla Hoeflea phototrophica DFL-43 virulence NA NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Hoeflea;species:Hoeflea phototrophica; 0.811181598 0.820047895 0.76885971 0.817371346 124898840 B_lactamase_A Burkholderia dolosa AUO158 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia dolosa; 1.284912494 1.267530615 1.20832176 1.269607021 1.173040666 1.270158297 1.192794594 1.24307896 1.257195685 1.225164804 1.202907304 1.23126307 1.166474088 1.185376287 1.156945446 1.199124086 1.27581228 1.254341212 284029470 alginase Kribbella flavida DSM 17836 Carbon Cycling Carbon degradation Alginate superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Kribbella;species:Kribbella flavida; 1.327402479 1.325214157 1.343102765 1.309701128 1.304424905 1.343958048 1.28281659 1.311617317 1.292014806 1.327184475 1.297643281 1.30973641 1.288918002 1.327293415 1.321429611 1.287688029 1.323052967 1.357359119 381381539 urec Caldilinea aerophila DSM 14535 = NBRC 104270 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Chloroflexi;class:Caldilineae;order:Caldilineales;family:Caldilineaceae;genus:Caldilinea;species:Caldilinea aerophila; 0.762054792 0.838373519 0.825511501 0.846379071 381202798 amyA Sphingobium yanoikuyae XLDN2-5 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium;species:Sphingobium yanoikuyae; 0.930322765 0.943026685 0.947586814 0.896773752 0.893084803 0.895739301 0.915778825 1.018752801 0.882517317 0.889863743 0.876741698 0.895251358 0.893703427 0.838105921 0.862308512 0.813438919 0.919885208 25027689 hbh Corynebacterium efficiens YS-314 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium efficiens; 0.77414108 0.811239889 237858229 GAPDH_Parabasalia Macrotrichomonas sp. GfMG19 Other Phylogenetic NA superkingdom:Eukaryota;order:Cristamonadida;family:Lophomonadidae;genus:Macrotrichomonas; 0.756310667 0.820494451 0.828369482 0.81370673 0.817633031 0.838227689 0.810663059 0.880627083 0.811735988 0.802564085 0.80029094 0.858749466 151302310 APS_AprB Desulfobacterium anilini Sulfur adenylylsulfate reductase NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfobacterium; 0.911471906 0.92017043 0.911820106 0.925864732 0.910606649 0.892188683 0.900077532 0.928019082 0.936233183 0.915306143 0.899504529 0.93036789 0.87895661 0.853917043 0.859162524 0.873372995 0.906437245 0.90999821 374313153 amyA Granulicella mallensis MP5ACTX8 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Granulicella;species:Granulicella mallensis; 0.851378678 0.814243153 0.850499106 0.878907096 0.85875885 0.855582178 0.837958168 119513724 amyA Nodularia spumigena CCY9414 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nodularia;species:Nodularia spumigena; 0.826217468 0.80638557 0.831850647 0.882849369 0.838577065 0.852592239 0.823969914 0.798941818 0.834917887 0.831507408 0.826338444 0.850755036 0.850387479 306495414 hzo uncultured planctomycete Nitrogen Anammox NA superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales; 0.805188089 0.783268754 256394117 hyaluronidase Catenulispora acidiphila DSM 44928 Carbon Cycling Carbon degradation hyaluronic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 1.104757205 1.071057007 1.112328724 1.131835877 1.120119846 1.072371213 1.124214804 1.129250226 1.125026872 1.087643733 1.120864689 1.090204242 1.051557288 1.040840882 1.047091346 1.054884868 1.128576209 1.09272025 399234178 aln Mycobacterium smegmatis str. MC2 155 Organic Remediation Others NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 0.778772381 0.871331223 0.818887737 0.832267616 0.864728023 0.979523002 0.842298398 0.804315413 0.829281926 0.831778063 0.802666562 0.87337057 94471255 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.782796266 0.805003069 0.829390085 0.874097858 0.811011898 0.857241886 0.867274323 0.864537984 0.808524187 0.829779171 0.795113563 0.808605621 0.780095107 0.822810428 73663770 arsc Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Staphylococcus;species:Staphylococcus saprophyticus; 0.816039427 0.815285081 0.86269983 0.863256554 0.889699129 0.848782941 0.914017318 0.859667362 0.886447415 0.903349609 0.836582917 0.860090376 0.917611096 0.900620572 0.870647747 0.85873829 0.846483057 0.85743706 159179144 b_lactamase alpha proteobacterium BAL199 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 1.347344622 1.331321154 1.310331562 1.328348564 1.301686213 1.375269164 1.319186078 1.320332408 1.317466183 1.320023951 1.299263936 1.325105901 1.277391206 1.284706201 1.259558656 1.304827475 1.338983552 1.343402724 46307932 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.01349369 1.001661187 0.954091037 1.002562201 0.965502253 0.975092761 0.935777799 0.947093435 0.971273369 0.95535769 0.959805897 1.002141243 0.952943027 0.9370572 0.937069087 0.949133031 0.986457513 0.989128419 114544950 TIM Roseovarius sp. HTCC2601 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pelagibaca;species:Pelagibaca bermudensis; 0.910919716 0.886919196 0.856376921 0.899369187 0.922437492 0.924124159 0.944369206 0.851603402 0.899811269 1.000074393 0.953710714 0.892626543 0.907383962 0.910730133 0.907677474 0.891997485 0.90370532 289208524 GAPDH_Calvin Thioalkalivibrio sp. K90mix Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio; 0.976718477 1.052063462 1.036834408 1.040267348 1.021093845 1.063110359 0.984793538 0.99221472 0.988716314 1.063269141 1.003569568 1.041181581 1.013732547 1.033134112 0.999656969 1.010560578 1.016234728 1.072466846 29829246 hyaluronidase Streptomyces avermitilis MA-4680 Carbon Cycling Carbon degradation hyaluronic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 0.78070286 0.834373002 0.866217588 0.850623734 0.815770844 0.799680664 0.809184324 0.812192921 0.818667892 0.842617618 118685870 proO Marinomonas sp. MWYL1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Marinomonas; 0.812359612 0.843519637 0.861279934 0.85985953 0.843644826 0.855845228 0.824024342 0.871808015 0.872615422 0.848265273 0.812292357 0.842742662 0.848823073 0.908317008 0.909133803 0.86059354 0.847355644 329934952 amyA Streptomyces griseoaurantiacus M045 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseoaurantiacus; 1.254945409 1.2336024 1.21202656 1.221525485 1.197271016 1.239908067 1.187061858 1.204106518 1.201895519 1.213351236 1.204690261 1.204938025 1.18490164 1.210627508 1.140496302 1.174840171 1.220628984 1.248032297 299525181 PRI Hyphomicrobium denitrificans ATCC 51888 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium;species:Hyphomicrobium denitrificans; 0.916143822 1.016146775 0.86294597 0.884041419 0.940402155 0.993756194 0.934777612 0.855497098 0.946810442 0.935739935 0.860903586 0.898777684 0.890158761 0.864822684 0.857865147 0.895377153 0.96876484 0.977285303 386421737 fccab Thiothrix nivea DSM 5205 Sulfur Sulfide Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Thiotrichaceae;genus:Thiothrix;species:Thiothrix nivea; 0.866393351 0.8835222 0.931929861 0.88505597 0.884395872 0.964618972 0.919829745 0.875403956 0.883645003 0.9372471 0.903061617 0.913267734 0.901075334 0.976898878 0.917618853 0.917546149 0.877797426 0.902763131 343965765 endoglucanase Caldicellulosiruptor lactoaceticus 6A Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacterales Family III. Incertae Sedis;genus:Caldicellulosiruptor;species:Caldicellulosiruptor lactoaceticus; 1.002559113 0.995039323 0.953149917 0.97540286 0.95265645 0.987705436 0.943236444 0.97205137 0.980816809 0.973900557 0.963230707 0.991095078 0.974037872 0.938774171 0.93380613 0.891510492 0.971110039 0.94127493 333487316 phta Mycobacterium sp. JDM601 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 0.926898734 0.909931253 0.875672165 0.895025386 0.898380846 0.915069155 0.874299397 0.883388767 0.920107011 0.904609946 0.84990648 0.895519809 0.830868434 0.879819589 0.827187012 0.838927966 0.909176357 0.938832651 45386181 narg unidentified bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.155689812 1.128291529 1.029628232 1.145279693 1.053553833 1.095975032 1.088469399 1.118718487 1.115040087 1.109276965 1.018268362 1.101361039 0.998745483 1.036796961 0.988998063 1.03869907 1.104281594 1.149247762 156932963 arsc Enterobacter sakazakii ATCC BAA-894 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Cronobacter;species:Cronobacter sakazakii; 1.519832375 1.488919314 1.472213203 1.454157889 1.442177511 1.510973901 1.461412152 1.456459852 1.461858128 1.486517722 1.447324472 1.454572837 1.4223689 1.449571257 1.394962403 1.456633175 1.483418852 1.473575139 300390311 fthfs uncultured bacterium Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria; 0.808272119 0.814233465 221728304 catechol_b Agrobacterium radiobacter K84 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 1.055871732 0.960058648 1.036016246 1.054950228 1.008415947 1.023939649 0.971667699 1.009504445 1.033366453 0.959372775 0.978427506 1.005454278 0.993191625 0.951997423 1.016222691 0.947256058 1.069428432 0.980347261 145221759 cutinase Mycobacterium gilvum PYR-GCK Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 1.038193472 1.02071756 1.040404631 1.017275752 1.030927548 1.022475329 1.023277586 1.029715407 1.028864256 0.992175031 0.997554923 1.001177636 1.021177648 0.941153051 0.965084011 0.960561756 0.994351857 1.054078859 11066440 dsrB Desulfobulbus propionicus Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobulbaceae;genus:Desulfobulbus; 0.866185879 0.827718044 0.808537956 0.836938077 0.816920991 0.854422433 0.79577803 0.873451384 0.819497745 154252553 pgk Parvibaculum lavamentivorans DS-1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhodobiaceae;genus:Parvibaculum;species:Parvibaculum lavamentivorans; 0.911173425 1.001411083 0.885095275 0.914731436 0.893136666 0.922718698 0.898405274 0.849362646 0.917576893 0.942201808 0.886885835 0.914754325 0.869284869 0.934131601 0.833142826 0.932256268 0.956365072 0.922076326 379988959 dsrB uncultured bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.791728546 0.874445174 0.807361722 0.868336478 269219233 ppx Actinomyces sp. oral taxon 848 str. F0332 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 848; 0.968523863 0.900273074 0.884712647 0.902701719 0.914710229 0.889180825 0.893701765 0.940364903 0.91783412 0.920531986 0.891402191 0.84724377 0.872689341 0.939967222 0.904379126 407761832 nahf Herbaspirillum frisingense GSF30 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herbaspirillum;species:Herbaspirillum frisingense; 0.950355619 0.992800519 0.982569142 0.946169696 0.991816444 0.981304442 0.949843694 0.950807624 0.958231364 0.95628899 0.959539763 0.933517538 0.90419574 0.918569271 0.949629877 0.967065866 0.937414977 297560355 pme Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Nocardiopsis;species:Nocardiopsis dassonvillei; 1.29936525 1.280988053 1.280554692 1.288760688 1.225604463 1.279156503 1.214005661 1.22712067 1.255921731 1.25814013 1.231848612 1.25102761 1.259928772 1.245931963 1.22428008 1.221459681 1.301107422 1.309984207 260616529 bphb Vibrio furnissii CIP 102972 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio furnissii; 0.948820053 0.906459854 0.896232653 1.002557828 0.959475359 0.968141686 0.956937052 1.034922131 1.03730368 0.922877689 0.941749412 0.860413461 0.902948183 0.858366429 0.953152725 0.973737771 0.964635353 0.996059401 295700160 cmci Burkholderia sp. CCGE1002 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 1.273912715 1.232233689 1.233143458 1.27426219 1.218192041 1.276198063 1.223405372 1.239557815 1.237720652 1.225441872 1.240578786 1.256189794 1.221875781 1.206495256 1.223034659 1.238906732 1.27969471 1.218272389 87200449 poba Novosphingobium aromaticivorans DSM 12444 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium aromaticivorans; 1.363199081 1.31109809 1.327682607 1.339500415 1.326129887 1.363249362 1.335732688 1.343055311 1.305303415 1.301646142 1.334077979 1.323043756 1.33593524 1.271058653 1.281601465 1.315424147 1.36409554 1.295909408 71741024 terc Pelobacter propionicus DSM 2379 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Pelobacteraceae;genus:Pelobacter;species:Pelobacter propionicus; 0.826912986 0.808375599 0.867235487 0.829860508 0.795235413 73538235 bend Ralstonia eutropha JMP134 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 0.840187383 0.818317379 0.810506442 0.814000347 240139136 SoxV Methylobacterium extorquens AM1 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium extorquens; 1.152607675 1.147364741 1.118286262 1.157796289 1.123928924 1.155571822 1.135284678 1.144811604 1.131945989 1.149974104 1.09844367 1.148206443 1.068065822 1.08243886 1.043218308 1.090864406 1.104285377 1.101265146 260651430 endochitinase Streptomyces scabiei 87.22 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces scabiei; 0.991399402 0.943547608 0.895032786 0.984618863 0.964869886 0.954968376 0.960082791 1.087004906 1.092143269 0.915443145 0.867502603 0.9680417 0.958522142 0.968274162 0.828992045 1.005748325 0.974449072 0.919404474 56678387 nbac Silicibacter pomeroyi DSS-3 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 1.204957333 1.204033041 1.164210694 1.190163297 1.174646146 1.213669161 1.191539161 1.197632536 1.131636375 1.15069971 1.16769379 1.167925751 1.134037965 1.132468172 1.106926399 1.126300434 1.158974407 1.197232994 358753228 RgaE Granulicella mallensis MP5ACTX8 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Granulicella;species:Granulicella mallensis; 0.981724284 1.00313489 0.915216489 0.937862295 0.943613222 0.99299355 0.945797436 0.943611316 0.957382454 0.988463125 0.942585522 0.994226118 0.931558975 0.91455301 0.896088269 0.960515509 0.974267331 0.948448257 91777987 tfda Burkholderia xenovorans LB400 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 1.328268345 1.28980957 1.307787479 1.300334052 1.297356263 1.307382551 1.283454076 1.294335139 1.29534007 1.284239832 1.304259208 1.300054684 1.299698087 1.226502995 1.26168603 1.276054745 1.322249553 1.283591566 388464734 arsc Planococcus antarcticus DSM 14505 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Planococcaceae;genus:Planococcus;species:Planococcus antarcticus; 0.957650708 1.030588946 0.979132346 0.961410334 1.017611514 0.973185002 0.937672383 0.93565237 1.007109271 0.935862123 0.975799524 0.950562694 0.935057374 0.944097706 0.958652215 0.948988714 1.003360895 157145060 CsoS1_CcmK Citrobacter koseri ATCC BAA-895 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter koseri; 0.937413681 0.923049183 0.942357432 0.941850169 0.921384863 0.957823376 0.89759358 0.887207183 0.929703274 0.923305493 0.906833944 0.921636948 0.897574556 0.897456669 0.918887381 0.889371627 0.92785271 0.959643645 311744352 mer Aeromicrobium marinum DSM 15272 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Aeromicrobium;species:Aeromicrobium marinum; 1.05495415 1.004832703 1.06469121 1.071087049 1.024405099 1.073868025 1.019435289 1.051680645 1.032913956 1.035035977 1.032460929 1.03414511 1.027314999 1.042718067 1.012505764 1.003366244 1.067543104 1.020606663 342834241 pula Streptococcus cristatus ATCC 51100 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus cristatus; 0.898858575 0.853845997 0.836734206 0.889853045 0.841910575 0.908824119 0.821305783 0.826977694 0.889607209 0.832537277 0.833399117 0.85644973 0.812825615 0.875840099 0.843183106 0.914749739 0.890232588 84778325 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.003202828 0.945500094 1.025377938 1.047100982 1.013615938 1.007066101 0.978498347 0.976966644 0.995997258 1.035165952 1.01212037 0.992362506 1.048650411 1.029080519 0.982248339 1.000786482 0.990750958 0.988936032 385677085 amyA Amycolatopsis sp. ATCC 39116 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis; 1.149683277 1.138223651 1.084837065 1.124427011 1.113430251 1.161740051 1.111265435 1.098407583 1.099176081 1.10721854 1.093074185 1.10125079 1.117601444 1.091297669 1.092313326 1.126773366 1.142934847 1.152801282 227077501 cmci Corynebacterium accolens ATCC 49725 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium accolens; 0.938084385 0.844132006 0.865921141 0.9574943 0.95229059 0.911834706 0.906713139 0.921466396 0.955814174 0.83769715 0.831851758 1.021129808 0.897651326 0.869664247 0.84175494 0.895112849 0.920333831 0.876342163 159181587 tfda alpha proteobacterium BAL199 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 1.141859985 1.111480794 1.083918782 1.12899789 1.087784545 1.143114142 1.12730385 1.126184342 1.096447565 1.101306765 1.098097308 1.129498615 1.056913906 1.047400163 1.034271662 1.065726225 1.121563032 1.120638048 291294687 xylanase Meiothermus ruber DSM 1279 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Meiothermus;species:Meiothermus ruber; 0.81048086 0.812126983 0.821091789 0.815393728 0.908863022 0.823708102 0.820882096 0.848846746 0.862910464 255535861 amyA Flavobacteriaceae bacterium 3519-10 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae; 0.87664487 0.912399483 0.871853212 0.881180296 0.89798031 0.898594764 0.877253055 0.842717217 0.934468016 0.900589707 0.876207744 0.863225648 0.852399958 0.932764158 0.875444405 0.85826788 0.878967509 0.891891634 17431367 bphF1 Ralstonia solanacearum Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 0.871966794 0.885457799 0.813830208 0.855266965 0.826590306 0.862633828 0.823450882 0.834331267 0.875264528 0.873457769 0.831376295 0.838642857 0.802847825 0.836507394 0.789226586 0.80721878 0.873080892 0.910402942 26278702 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.830562895 0.81341235 0.84502143 0.797437383 0.787994633 0.830522031 0.799629396 0.76717751 0.834761149 380772708 mult_ring_12DiOx Microbacterium laevaniformans OR221 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Microbacterium;species:Microbacterium laevaniformans; 0.9964405 0.984731332 0.974657293 1.049906306 0.990349395 0.984509862 0.972985202 1.012548888 1.01432029 0.965505994 0.968317616 1.004536691 0.968450263 0.968019903 0.95306373 0.969357492 1.032015949 0.995193012 2117033 rgh Aspergillus niger Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 0.78167262 0.856772845 0.807051358 0.848958805 0.825934859 0.810902967 0.828591373 0.871278581 0.867535053 150397520 amyA Sinorhizobium medicae WSM419 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 0.861967046 0.872960904 0.809352248 0.842704072 0.810705027 0.857005071 0.817565544 0.820961029 0.889468191 0.831043071 0.827447906 0.880155249 0.895892751 118470496 bend Mycobacterium smegmatis str. MC2 155 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 0.800761707 0.849852624 376319108 cellobiase Melissococcus plutonius DAT561 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Enterococcaceae;genus:Melissococcus;species:Melissococcus plutonius; 0.819801853 0.854115556 0.799434614 0.820871986 238936858 glucoamylase Lachancea thermotolerans Carbon Cycling Carbon degradation Starch superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Saccharomycetaceae;genus:Lachancea; 0.999672319 0.985556175 0.984688357 0.949012138 0.950223336 1.007355618 0.961547053 0.987973969 0.987856128 0.95658035 0.940632493 0.982625232 0.978197039 0.934517487 0.940604295 0.984003717 0.958709553 0.998398844 294084940 atzb Candidatus Puniceispirillum marinum IMCC1322 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;genus:Candidatus Puniceispirillum;species:Candidatus Puniceispirillum marinum; 0.826695021 0.815246954 0.826134686 0.815402998 0.829460161 0.819336952 0.83422517 0.823237724 297150849 amyA Streptomyces pristinaespiralis ATCC 25486 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces pristinaespiralis; 1.383210328 1.317002835 1.350282806 1.358254411 1.308219905 1.342972112 1.304890424 1.337509187 1.339417339 1.328207246 1.342470854 1.351028719 1.306177501 1.308924969 1.290453894 1.33315491 1.386368215 1.332617361 91807156 nosz uncultured alpha proteobacterium Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 0.82463186 0.793371025 0.814320759 0.81753337 226943373 cysJ Azotobacter vinelandii DJ Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Azotobacter;species:Azotobacter vinelandii; 1.148424843 1.176592074 1.114504168 1.111387077 1.121357234 1.16385572 1.126881132 1.109556741 1.107378254 1.123097181 1.132080365 1.124819341 1.129560519 1.100977428 1.090476188 1.089828322 1.150202614 1.134380642 254501954 nirb Labrenzia alexandrii DFL-11 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia alexandrii; 0.780554135 0.789550164 0.778438492 0.76771192 124267615 fccab Methylibium petroleiphilum PM1 Sulfur Sulfide Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 1.177991204 1.14611228 1.152597461 1.17517664 1.14030419 1.153244916 1.143446705 1.170037336 1.172772737 1.132127235 1.155595897 1.17187398 1.142933708 1.141330816 1.163696994 1.160367208 1.158318823 1.107578275 82715329 nagg Pseudomonas putida F1 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 0.944624873 0.94236329 0.91087274 0.897474345 0.933959718 0.917020682 0.89440637 0.883390648 0.942776382 0.901694595 0.890134253 0.896557828 0.808515805 0.883747202 0.842641333 0.944177112 0.948493559 390190066 nosz Methylocystis sp. SC2 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylocystaceae;genus:Methylocystis; 0.766357296 0.85005774 161385890 ppx Phaeobacter gallaeciensis 2.10 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 0.819621602 0.903813826 1.114547447 0.844379263 0.850468029 0.861107327 0.852285955 0.860124928 0.807848753 0.880079752 388438621 nhh Rhodanobacter spathiphylli B39 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Rhodanobacter;species:Rhodanobacter spathiphylli; 1.160247383 1.134223767 1.141458369 1.150785094 1.142227643 1.169464929 1.141190317 1.146506637 1.156538936 1.148893035 1.133997899 1.144053392 1.089101296 1.121094147 1.100574499 1.109101879 1.172003355 1.108958995 60476014 rubisco uncultured bacterium Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria; 0.789346486 0.796093675 345302151 amyA Rhodothermus marinus SG0.5JP17-172 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;order:Bacteroidetes Order II. Incertae sedis;family:Rhodothermaceae;genus:Rhodothermus;species:Rhodothermus marinus; 1.044118005 1.063538714 1.069979913 1.0714829 1.074180848 1.048679191 1.022010408 1.039688124 1.069710201 1.046097095 1.042998902 1.013229921 0.997269257 0.977526285 1.010629453 1.037958124 1.05896103 319435702 limeh Dietzia cinnamea P4 Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dietziaceae;genus:Dietzia;species:Dietzia cinnamea; 1.40467779 1.365952185 1.36871941 1.35491365 1.354949076 1.398014736 1.324709215 1.364562651 1.35134744 1.353810361 1.370373943 1.415083856 1.297781055 1.305620778 1.329278138 1.34975105 1.377609968 1.345340549 350545542 arylest Candidatus Burkholderia kirkii UZHbot1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Candidatus Burkholderia kirkii; 0.918843445 1.068590842 0.950248202 0.967173268 0.972245124 1.036638691 0.945799005 0.915484429 1.014535566 0.973102734 0.915092721 0.986796822 0.985350808 0.987545171 0.977358633 0.985099037 1.000030655 0.986258439 299799165 endoglucanase Amycolatopsis mediterranei U32 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 0.972885246 0.97848617 0.949509921 0.954736233 0.896035268 0.933819703 0.898487469 0.966430807 0.994599982 0.959926259 0.861430953 0.967707536 0.853184898 0.914481025 0.928067372 0.874720481 0.973395605 0.99813037 87281233 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.821353987 0.772141212 317047756 ppx Pantoea sp. At-9b Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 0.838639344 0.783027331 0.812467751 0.81215666 323528282 rubisco Burkholderia sp. CCGE1001 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 1.11448202 1.101826051 1.090894095 1.14051279 1.123009917 1.072878829 1.084965022 1.159006779 1.081279676 1.058914255 1.073387438 1.136458098 1.067155057 1.039999344 1.07025928 1.053843721 1.100237031 1.094272652 338171300 cpna Cupriavidus necator N-1 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 0.880760079 0.897320691 0.907251998 0.946933042 0.918742638 0.921755891 0.919199822 0.940981993 0.903535593 0.927551827 0.901777931 0.954234369 0.927602016 0.896209769 0.93764871 0.938213519 0.934160367 0.913781913 334090341 dsra Desulfotomaculum ruminis DSM 2154 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum ruminis; 0.998670028 0.811896059 0.920308783 0.828550466 0.790162962 0.952201736 0.802843239 0.821409507 0.859467515 0.874543532 0.846378118 0.782136459 0.795880752 0.87755059 0.862801802 0.825709214 27358234 endochitinase Vibrio vulnificus CMCP6 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio vulnificus; 0.780410751 0.812574104 0.829814466 0.7868345 0.840255714 0.841122031 0.819003773 0.813155711 0.74225783 0.820986237 367042988 rgl Thielavia terrestris NRRL 8126 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Thielavia;species:Thielavia terrestris; 0.811256141 0.824608635 0.955592997 0.828960114 0.824243594 0.87388772 0.806008048 0.825610259 0.957379506 0.90775226 0.84141789 0.945252025 0.862903803 0.872762927 0.843634454 0.887399716 194348647 alginase Stenotrophomonas maltophilia R551-3 Carbon Cycling Carbon degradation Alginate superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 1.418966691 1.367084965 1.386482563 1.432622365 1.380225189 1.43203493 1.40611948 1.439807443 1.382275535 1.359399305 1.379692933 1.398865694 1.346909327 1.341117339 1.34771363 1.387483698 1.413361461 1.366343274 121998731 dsrB Halorhodospira halophila SL1 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Halorhodospira;species:Halorhodospira halophila; 1.091117051 1.094209686 1.045846409 1.056867793 1.034000122 1.064257046 1.034551838 1.012747203 1.033718946 1.017348409 1.032774537 1.063635037 1.03724935 1.02183321 1.030754026 1.045994963 1.072328641 1.037330636 56695898 SoxB Ruegeria pomeroyi DSS-3 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 0.872584562 0.879219222 0.911362549 0.978955105 0.94093064 0.894130039 0.931499684 0.956588286 0.935344426 0.870610916 0.898950873 0.920033469 0.875421711 0.823114747 0.874726418 0.848704996 0.918283842 0.871715828 83316810 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.784244446 0.798590737 0.812595688 0.851012187 171678191 amyA Podospora anserina S mat+ Carbon Cycling Carbon degradation Starch superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Lasiosphaeriaceae;genus:Podospora;species:Podospora anserina; 0.852755059 0.854919618 0.900166638 0.901514228 0.864148343 0.842314481 0.900518008 0.834203215 0.883610752 0.822889226 0.8676358 0.85695427 0.837261975 0.893343261 0.872665549 221738038 nirb Agrobacterium vitis S4 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium vitis; 0.839975927 0.823020399 0.862133742 0.805526372 0.8702782 0.873636739 0.86748261 0.830957177 0.8679388 0.845457166 0.870480525 0.84500981 0.814733441 0.836521836 0.834642169 283439393 CsoS1_CcmK Pirellula staleyi DSM 6068 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Pirellula;species:Pirellula staleyi; 0.828889941 0.875810129 0.830284828 0.827276527 0.835360214 0.817626715 0.808321864 0.828013949 0.830004305 0.846024475 0.82581161 386379987 cysJ Serratia plymuthica PRI-2C Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia plymuthica; 0.816118524 0.80090529 0.824649796 0.844202301 0.868290933 0.866304176 0.820689537 0.811387863 0.838368529 0.845654651 0.822000369 0.843054853 0.814622442 0.863875712 0.823136138 0.881435917 299887881 fthfs Leuconostoc gasicomitatum LMG 18811 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Leuconostocaceae;genus:Leuconostoc;species:Leuconostoc gasicomitatum; 0.825304103 0.777039265 0.859534672 0.828364721 0.895434981 0.830108061 0.800399794 0.781361115 0.81757479 0.821544491 0.851104429 0.818840233 0.823578405 300073223 tktA Herbaspirillum seropedicae SmR1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herbaspirillum;species:Herbaspirillum seropedicae; 0.91478231 0.910587662 0.891093649 0.863576634 0.887572486 0.9002331 0.913310058 0.903936556 0.915434545 0.922337389 0.853543427 0.92432429 0.84318926 0.846059173 0.857954749 189193225 rgh Pyrenophora tritici-repentis Pt-1C-BFP Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 1.098936731 1.062112743 1.106746767 1.099547791 1.180968132 1.129983678 1.136391618 1.107806955 1.096217841 1.149620793 1.149323076 1.106791535 1.132950062 1.10591172 1.040166705 1.075134601 1.128680444 1.077170294 332014931 ppx Sphingomonas sp. S17 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 1.051529422 0.891126027 0.894144015 0.816945726 0.873766215 0.877254858 0.888445204 0.819060931 0.840887206 0.843987375 0.868435904 0.921834265 283472098 xylanase Xanthomonas albilineans GPE PC73 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas albilineans; 0.985688901 0.924382501 0.97902537 0.96085791 0.974821481 0.985363618 0.97874001 0.983054288 0.975317326 0.959011296 0.95162774 0.921485915 0.904686963 0.958137865 0.857157124 0.899884303 0.97330222 0.976630244 115423688 endoglucanase Bordetella avium 197N Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella avium; 1.018842669 1.001779524 1.048798289 1.006616529 0.989357941 1.0226101 1.009862788 1.02079173 0.988574668 1.008667451 0.968100446 1.006929129 0.929899206 0.93902508 0.924975124 0.976307498 1.014840023 1.032022108 336425030 amyA Lachnospiraceae bacterium 3_1_57FAA_CT1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae; 1.013110559 1.067453524 1.018470002 1.035123577 1.000314219 1.080576554 1.018639204 1.061554651 1.016559685 1.041403529 0.978397515 1.017661447 0.985329441 1.00306356 0.995082384 1.057265613 1.046319126 1.016621593 78093518 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.051494599 1.054443649 1.034476767 1.03034218 1.050110138 1.049379845 1.050854878 1.048955453 1.049912763 1.038479377 0.989823241 0.991393191 0.9853524 0.998241053 0.941565695 0.975578755 1.043614138 1.0706357 321171897 aps_apra uncultured bacterium Sulfur adenylylsulfate reductase NA superkingdom:Bacteria; 0.88982525 0.876073297 0.935462815 0.930402732 0.862176268 0.80423273 0.806064901 0.894177803 0.871322913 0.902768158 0.887304309 0.87110767 0.862751316 0.837710576 0.890491144 0.889974644 359253598 PRK Mesorhizobium alhagi CCNWXJ12-2 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium alhagi; 1.423839196 1.367122621 1.327567857 1.387551599 1.324598834 1.370465665 1.320071814 1.390009713 1.381279214 1.333618929 1.313676567 1.358769828 1.324041647 1.324825179 1.289085118 1.346634856 1.367010029 1.376597611 95110683 nagg Pseudomonas Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae; 0.788319889 0.801348122 72118614 xylj Ralstonia eutropha JMP134 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 0.977877948 0.991243081 0.973827742 0.965012369 0.981185791 0.98121402 0.956631262 0.946833851 0.930466382 0.971823979 0.953614951 1.001527675 0.944159514 0.923631387 0.918938362 0.972101285 0.967171969 0.973160653 169832029 APS_AprB Candidatus Desulforudis audaxviator MP104C Sulfur adenylylsulfate reductase NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Candidatus Desulforudis;species:Candidatus Desulforudis audaxviator; 1.386754367 1.375763738 1.367654271 1.365930054 1.348278043 1.347511384 1.341033451 1.354248477 1.365246724 1.349306196 1.332893762 1.382334075 1.315825672 1.287513799 1.277735032 1.319385555 1.342643417 1.326715615 161381248 arsc Oceanibulbus indolifex HEL-45 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanibulbus;species:Oceanibulbus indolifex; 1.144466193 1.1497174 1.089935795 1.180697948 1.144040909 1.119147011 1.095992229 1.130650848 1.140216486 1.146050574 1.172317592 1.15633009 1.128730368 1.080879435 1.104452867 1.070586166 1.153831042 1.119184011 367472345 phn Bradyrhizobium sp. ORS 285 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 1.18649076 1.165048627 1.143149626 1.162413661 1.14289259 1.151671449 1.139815493 1.1355309 1.145082516 1.152676711 1.113847223 1.161343424 1.107698548 1.121793854 1.088075188 1.101898954 1.166035491 1.149832699 374330620 poba Pseudovibrio sp. FO-BEG1 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 0.879995543 0.864276841 0.898805319 0.912090497 0.798138809 0.869190865 0.865229044 0.871862677 0.898052925 0.876756658 0.836378615 0.816501795 0.867742036 0.921462965 327537526 mer Rhodopirellula baltica WH47 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Rhodopirellula;species:Rhodopirellula baltica; 0.842735589 0.858844468 0.840178108 0.870709732 0.836616133 0.853727092 0.844028144 0.83949575 0.812225653 0.856919669 0.80713412 0.854600244 0.849354517 154245081 catechol Xanthobacter autotrophicus Py2 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 1.033651454 1.051894881 1.002050042 0.998051952 1.035354991 1.028534363 0.982341416 0.946839493 0.998325877 1.040873286 0.998679143 1.028538164 0.985486486 1.007247257 0.943360944 0.994637918 0.989843716 1.034236477 297191743 chitinase Streptomyces pristinaespiralis ATCC 25486 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces pristinaespiralis; 0.842869519 0.857325184 0.856490077 0.866839851 0.811555944 0.899185377 0.896036384 0.898551534 0.808267811 0.848560857 0.910689146 223553646 arsc Tolumonas auensis DSM 9187 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Tolumonas;species:Tolumonas auensis; 0.788450434 0.82571985 0.797453588 139478547 mer uncultured soil bacterium Metal Homeostasis Mercury Detoxification superkingdom:Bacteria; 0.838376255 0.791282726 0.821526167 0.780456514 0.819442358 0.825807033 0.836565616 0.814565824 209486846 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.845597573 0.805868753 0.866439134 0.808381805 0.790505714 0.87768047 0.891890948 0.893120445 0.82545991 0.854153647 0.828262404 0.809973801 77379172 mer uncultured bacterium Metal Homeostasis Mercury Detoxification superkingdom:Bacteria; 1.137643495 1.073847807 1.064474978 1.034914549 0.949455889 1.016836473 0.94243123 0.989766765 1.041217954 1.045727685 1.028707773 0.984621123 0.993522178 0.961467799 0.953040217 1.027724102 1.068326551 1.068550148 374607979 cutinase Mycobacterium tusciae JS617 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tusciae; 0.883019929 0.920162136 0.849951104 0.866597723 0.851454277 0.878604401 0.864940176 0.864682197 0.807846797 0.837409229 0.829909388 0.812777925 0.838237523 0.828872346 0.874038923 0.81976791 239626950 CsoS1_CcmK Clostridiales bacterium 1_7_47_FAA Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales; 1.069301849 1.113985922 1.033886182 1.065060843 1.056644997 1.091648714 1.058446197 1.068096086 1.066760586 1.028053682 1.059343634 1.060687341 1.053293463 1.052283184 1.05287935 1.062144671 1.057120564 1.060436718 380774147 amyA Microbacterium laevaniformans OR221 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Microbacterium;species:Microbacterium laevaniformans; 0.939980077 0.983811417 0.914569205 0.947896889 0.980449608 0.946508879 0.937676243 0.909154213 0.957941435 0.985880397 0.986378278 0.951540146 0.983054623 0.951245719 0.878464501 0.918048667 0.972251287 0.978757477 1518425 cysI Thiocapsa roseopersicina Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiocapsa; 1.065802196 1.091031807 1.097925339 1.047905374 1.084223248 1.106325261 1.037320367 1.064565755 1.04008523 1.081287149 1.054408157 1.058930636 1.105957621 1.058430853 1.077085717 1.073094813 1.061971213 1.116659652 139003567 nifh uncultured nitrogen-fixing bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 1.120835319 1.095236441 1.064057639 1.096547483 1.100293602 1.099693094 1.107393834 1.068412159 1.054457826 1.10546477 1.112782055 1.105997769 1.095132917 1.077649701 1.037859876 1.124946995 1.105659208 1.125030061 162568489 aoxb Thiomonas arsenivorans Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Thiomonas; 1.094316634 1.204097283 1.11653964 1.124376489 1.056728832 1.111144567 1.067821462 1.075781969 1.062286745 1.084924529 1.072271067 1.106662028 1.066003245 1.092366636 1.050343135 1.080425062 1.087202649 1.074038737 157285316 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.054029363 1.052572313 1.00206841 1.022584858 0.993595398 1.026937253 0.99501662 1.018912501 1.011438744 1.054692414 1.02478001 1.030985825 0.971762704 0.989635031 0.961774967 0.953473762 1.031287204 1.078805977 145216441 alkb Mycobacterium gilvum PYR-GCK Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 1.008343373 1.091758349 1.04098032 1.031612689 1.037938699 1.090243143 1.0128025 1.011822753 0.988732471 1.009453685 0.992742832 1.00326915 0.991365819 1.041018648 1.000012982 1.02387992 1.018310336 1.056823491 2773302 xylanase Selenomonas ruminantium Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Selenomonas; 0.846559522 0.85638516 0.843883815 0.920487799 0.829330146 0.888057731 0.810051188 0.896858419 0.881405658 0.874949619 0.852505481 0.876098534 0.835341666 0.830382691 0.837186167 0.881335204 0.87201271 0.83659424 294629964 endoglucanase Streptomyces sp. e14 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 0.949005572 0.960873376 0.900063002 0.947189576 0.928663457 0.936454783 0.92108169 0.932582706 0.958656418 0.934818475 0.924302005 0.938295314 0.919029967 0.893196204 0.889412469 0.917101628 0.936920443 0.957519797 197623761 fthfs Aciduliprofundum boonei T469 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Archaea;phylum:Euryarchaeota;genus:Aciduliprofundum;species:Aciduliprofundum boonei; 0.777403629 0.805457156 374303591 tfda gamma proteobacterium HIMB55 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 0.914247857 0.922289157 0.908872205 0.913591545 0.832687735 0.879459388 0.853495367 0.909967843 0.901813337 0.904016291 0.886774916 0.936418443 0.816279506 0.85619446 0.833935456 0.864111974 0.906406854 0.957395904 388537696 SoxB Advenella kashmirensis WT001 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Advenella;species:Advenella kashmirensis; 0.870126384 0.886703792 0.882811183 0.869907814 0.920661861 0.862351167 0.879128027 0.882083117 0.811304078 0.793436887 0.806587566 0.812578249 0.881477759 0.932503031 238599616 xylanase Moniliophthora perniciosa FA553 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Marasmiaceae;genus:Moniliophthora;species:Moniliophthora perniciosa; 1.03228702 0.919626484 0.912783541 0.927421237 0.938545157 0.922804336 0.965665788 1.030648218 0.944807457 0.93686429 0.929781129 0.939668551 0.938594907 0.880775134 0.862156092 0.880541205 0.982013486 0.928003297 344210197 tehb Haloarcula hispanica ATCC 33960 Metal Homeostasis Tellurium Detoxification superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloarcula;species:Haloarcula hispanica; 1.199158667 1.18823403 1.12937681 1.143929301 1.131538796 1.165397442 1.097656307 1.150170637 1.141881229 1.156025623 1.101522745 1.13407465 1.108661218 1.127567626 1.081488347 1.120492799 1.162853904 1.149392129 225043355 xylanase Clostridium asparagiforme DSM 15981 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium asparagiforme; 1.204669608 1.165067111 1.145407882 1.218655762 1.141569131 1.195442557 1.127224528 1.150884802 1.167897759 1.130668121 1.126237625 1.142945531 1.131484686 1.133624975 1.078798441 1.112802077 1.206048297 1.139267258 88864142 arsc Jannaschia sp. CCS1 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Jannaschia; 0.830256159 0.933035055 0.829254057 0.848304134 0.793011221 0.817348467 0.814770722 0.859761682 0.830869068 0.878550001 0.864182272 0.824292258 0.80380204 0.867737347 21648295 dsra Chlorobium tepidum TLS Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobaculum;species:Chlorobaculum tepidum; 0.881945076 0.842889764 0.857586778 0.863260129 0.784701696 0.80670382 0.803510174 0.856461133 0.860104766 0.900260315 0.848407688 0.832150292 0.775972012 0.809224718 0.822603745 0.870567719 0.890811994 306528163 pme Dickeya dadantii 3937 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya dadantii; 1.064580648 1.053342982 0.976608306 0.993633714 1.027440117 1.062243801 0.986327705 1.003778415 0.98708637 1.024445415 1.008073448 0.981102206 1.021589332 1.021997718 1.016295774 0.985689702 1.060288535 1.066208685 227069485 narb uncultured archaeon Nitrogen Assimilatory N reduction NA superkingdom:Archaea; 0.903887227 0.864018569 0.863665097 0.896068923 0.91939228 0.843389582 0.880291693 0.887164968 0.852177966 0.835231917 0.856357102 0.954531722 0.861347878 0.918017242 316922313 b_lactamase Bilophila wadsworthia 3_1_6 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Bilophila;species:Bilophila wadsworthia; 0.768178373 0.87852022 0.873026199 0.790517108 288940823 fccab Allochromatium vinosum DSM 180 Sulfur Sulfide Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Allochromatium;species:Allochromatium vinosum; 1.153401226 1.01404586 1.030993013 1.122416342 1.058196555 1.12730875 1.007327666 1.057620874 1.067843287 0.991669444 0.942129946 1.081271114 1.025735468 1.168531095 1.034133663 0.99994493 1.122825062 1.038505213 388566410 tfda Hydrogenophaga sp. PBC Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Hydrogenophaga; 1.034078843 1.015573573 1.020743414 1.02211764 1.071185653 1.091973516 1.043348762 1.01404324 1.026619713 1.012078036 1.04001613 1.018566293 1.029678124 0.984624097 0.984655267 1.044720528 1.036880413 1.038995706 256558705 amyA Brachybacterium faecium DSM 4810 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dermabacteraceae;genus:Brachybacterium;species:Brachybacterium faecium; 0.94179132 0.943572409 0.891067981 0.91108814 0.980306603 0.952039676 0.895790361 0.89198108 0.902879151 0.949115094 0.832034814 0.89922195 0.848817076 0.90801677 0.916989646 0.944041387 0.947028372 1.002627189 220694706 cellobiase Aspergillus flavus NRRL3357 Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus flavus; 1.081919458 1.087781622 1.040329093 1.068964551 1.058156519 1.086322609 1.043649184 1.077024204 1.096950919 1.081671597 1.044694238 1.065604333 1.052341855 1.087832317 1.035727567 1.095981385 1.066235695 1.100853878 365866368 cellobiase Streptomyces sp. W007 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 0.955420376 0.915492038 0.935739269 0.929494537 0.957562952 0.911828496 0.867942596 0.936993064 0.896218187 0.842058933 0.911708657 0.882547419 0.900286819 0.846399528 0.899921365 0.88312166 0.916743055 83954851 SoxB Sulfitobacter sp. NAS-14.1 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 0.838646538 0.819628405 0.838613636 0.86333294 0.868386325 157804771 APS_AprB Thiodictyon sp. f4 Sulfur adenylylsulfate reductase NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiodictyon; 0.778462764 0.794514821 0.820976949 0.796795946 0.827803268 0.771604241 0.863621875 359775707 gdh Arthrobacter globiformis NBRC 12137 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter globiformis; 1.073267049 1.030968356 1.075555005 1.087787268 1.067548668 1.061746212 1.064374839 1.099982877 1.089839844 1.041196219 1.000015512 1.061744035 1.011845026 0.954242514 1.052762693 1.020090476 1.101217715 1.085527194 118660505 one_ring_12diox Burkholderia multivorans ATCC 17616 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 1.009824096 0.969810602 0.894382349 0.964025296 0.872783414 0.968902356 0.887715973 0.900595314 0.930730666 0.91674448 0.875188304 0.916572975 0.855363576 0.944367807 0.881939099 0.901106362 1.001083532 0.970123016 302438091 atza Streptomyces sp. AA4 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 0.945824657 1.003423723 0.936722468 0.91703292 0.961461241 0.991071091 0.939942719 0.898621067 0.88196834 0.957193268 0.923166639 0.950830693 0.939864408 0.940415301 0.908651908 0.935467958 0.956930463 0.97525067 306517003 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.563403505 1.565817332 1.51884548 1.517524675 1.506786037 1.573110536 1.493607985 1.500889594 1.487551292 1.507052973 1.502221622 1.500035293 1.492965676 1.496203449 1.489708107 1.52530673 1.542078456 1.530394056 328808661 amyA Verrucosispora maris AB-18-032 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Verrucosispora;species:Verrucosispora maris; 0.857459859 0.862255076 0.865568783 0.846975481 0.83335698 0.826319289 0.845425226 0.851626388 0.847986198 0.807987805 0.84896801 0.859678615 0.878167082 0.843451422 269211188 amyA Actinomyces sp. oral taxon 848 str. F0332 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 848; 0.968818596 0.782071008 0.950238415 0.785951715 169777433 pec_Cdeg Aspergillus oryzae RIB40 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus oryzae; 0.781170259 0.832984494 0.961141597 0.998584404 0.910412826 1.055794254 0.994875162 0.959949428 0.934087749 0.945157642 126739192 ppx Roseobacter sp. SK209-2-6 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 1.112613088 1.128899064 1.157884196 1.183846216 1.132634201 1.125002492 1.112281465 1.173870094 1.176135988 1.157256764 1.123557075 1.184717445 1.105457496 1.112982321 1.079844873 1.168574127 1.138095444 1.110071836 385210399 bphc Burkholderia sp. Ch1-1 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 0.970264035 0.88923008 0.86561116 0.935021906 0.852276475 0.882121353 0.876085805 0.908073898 0.955691776 0.889482503 0.857679243 0.926525359 0.896111723 0.874779224 0.909224485 0.90080638 0.955445028 0.861916363 371926885 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.897150646 1.154631696 0.932962652 0.918825715 0.876976022 0.869019797 0.861968423 0.79433291 0.871631845 0.873435546 0.841512453 0.907214437 0.855988855 0.880500401 0.925469009 0.79169629 0.879578427 0.850992611 383460966 amyA Saccharomonospora xinjiangensis XJ-54 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora xinjiangensis; 1.361686236 1.295155648 1.304158997 1.316848529 1.289080953 1.315504232 1.271409754 1.29367783 1.302455255 1.284591714 1.285605646 1.309090083 1.258052211 1.264399826 1.271392293 1.279110857 1.307272856 1.286038895 116620953 arylest Candidatus Solibacter usitatus Ellin6076 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 1.067409276 1.05401909 1.033066924 1.030990562 1.016914864 1.027103881 0.948182365 0.99846453 1.035406183 1.036334383 1.015270262 1.030565909 0.980425317 0.998859859 0.961449162 0.991105283 1.040045679 1.071907641 146406446 napa Bradyrhizobium sp. BTAi1 Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 1.141109448 1.114728077 1.118543772 1.096152793 1.086647735 1.103148877 1.116644807 1.176954018 1.123544485 1.107058935 1.138805014 1.120789305 1.118329444 1.062147612 1.115106439 1.092120458 1.140818244 1.104720724 116624835 RgaE Candidatus Solibacter usitatus Ellin6076 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 1.142389848 1.10397072 1.115795365 1.139636496 1.113367678 1.138724091 1.155804027 1.13062522 1.104776931 1.087553221 1.094207968 1.128785134 1.080412147 1.04968266 1.0777025 1.070016864 1.163948661 1.125758831 308227452 tktA Oscillochloris trichoides DG6 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Oscillochloridaceae;genus:Oscillochloris;species:Oscillochloris trichoides; 1.248937918 1.257791826 1.204617237 1.225860911 1.173287856 1.205257517 1.156296567 1.194673907 1.209477413 1.189503938 1.199379631 1.208716409 1.168532153 1.162598895 1.156221674 1.285020316 1.226082112 1.195889954 6624274 bphF1 Comamonas testosteroni Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas; 0.805389489 0.841267749 289209550 tktA Thioalkalivibrio sp. K90mix Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio; 1.029877996 0.886092331 0.939099501 0.951116889 0.87852318 0.901404057 0.867967865 0.896719284 0.952726464 0.963755925 0.922097986 0.941295865 0.918759076 0.895910781 0.848662172 0.931433202 0.95317315 0.936530016 95110658 endochitinase Pseudomonas Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae; 0.783021053 0.800492834 0.960787107 0.790409763 0.843823919 0.773734867 334735418 pme Enterobacter aerogenes KCTC 2190 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter aerogenes; 1.039057678 0.997667565 1.011657658 1.055821129 0.871255516 0.916369313 0.908637505 0.980192274 1.008696491 0.944240202 0.934087422 0.973615667 0.919874816 0.885412835 0.903546121 0.894612152 1.003695718 0.935271997 170079020 ppk Synechococcus sp. PCC 7002 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 0.988445069 0.970664188 1.015882068 0.979577789 0.992553512 0.982869296 0.975787815 0.960025493 0.99700679 1.024293849 0.919942234 0.973844145 0.962358335 0.927275446 0.894457458 0.926594338 0.969295215 0.979256352 120607444 arsc Acidovorax sp. JS42 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 0.997343155 1.022624633 1.010270945 0.982402761 0.990869769 1.013297382 0.985456281 0.96831194 1.00435248 1.014482548 0.974699564 0.991514573 0.960514776 0.981798638 0.927180144 0.976896147 1.036079334 1.046289542 227069607 nira uncultured archaeon Nitrogen Assimilatory N reduction NA superkingdom:Archaea; 0.919676211 0.898943737 0.869729267 0.92641492 0.867338566 0.91654137 0.824203651 0.866926861 0.863999864 0.896004383 0.856887698 0.890140434 0.875141576 0.875294849 0.866444306 0.874365994 0.934284631 0.93862105 261879625 heparinase Prevotella bergensis DSM 17361 Carbon Cycling Carbon degradation Heparin superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella bergensis; 0.887351383 0.809483696 0.818642467 0.894061894 0.825730946 0.816570652 0.82508326 0.873270935 0.792196823 0.833769565 0.879077058 0.818008466 319437711 amyA Dietzia cinnamea P4 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dietziaceae;genus:Dietzia;species:Dietzia cinnamea; 0.816963398 0.850781222 0.870345554 0.925180653 0.837679631 0.851069006 0.892595311 383826827 mhpb Mycobacterium xenopi RIVM700367 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium xenopi; 0.803646568 0.784678628 83361963 urec Rhodobacter sphaeroides ATCC 17025 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 0.761525334 0.797688826 0.784294257 332592287 fthfs uncultured bacterium Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria; 1.067700777 1.061702214 1.068043113 1.082232195 1.077501446 1.073286814 1.058607898 1.060440457 1.049814722 1.049280226 1.087384702 1.073645714 1.064661634 1.030789679 1.039039968 1.042151974 1.070911497 1.043785592 148239655 Sir Synechococcus sp. WH 7803 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 1.056199966 1.079676944 1.056731078 1.070692279 0.998945501 1.075255717 1.004672869 1.074475763 1.061276097 1.056946754 1.041306102 1.029692881 0.983822895 1.039567103 0.976278987 1.028988226 1.059860296 1.080676377 119374770 arsc Paracoccus denitrificans PD1222 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 1.15656818 1.130886027 1.121491124 1.122826715 1.097386516 1.128677604 1.119776189 1.123218397 1.109272699 1.112084718 1.116412444 1.103904846 1.090342043 1.012710552 1.06035766 1.042098386 1.137347765 1.112913702 152965005 ara Kineococcus radiotolerans SRS30216 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Kineosporiaceae;genus:Kineococcus;species:Kineococcus radiotolerans; 0.924073832 0.944303696 0.941840701 0.960161745 0.94502872 0.939353419 0.935611436 0.940461497 0.951754924 0.971842843 0.943276651 0.949068639 0.927807056 0.900452329 0.901474494 0.874835561 0.95991 0.949862171 325479453 fthfs Anaerococcus prevotii ACS-065-V-Col13 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XI. Incertae Sedis;genus:Anaerococcus;species:Anaerococcus prevotii; 0.891132669 0.894028141 0.984249479 0.922527702 0.987105069 1.012491532 0.958362268 0.901166944 0.981825459 0.933193721 0.930562232 0.9180048 0.897527665 0.836598598 0.817774361 0.878814 0.932336167 0.892627734 269305587 amyA Xylanimonas cellulosilytica DSM 15894 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Promicromonosporaceae;genus:Xylanimonas;species:Xylanimonas cellulosilytica; 1.170425355 1.217405719 1.146573534 1.170231271 1.123916286 1.17925446 1.137633792 1.15923135 1.151845739 1.171365967 1.130095992 1.163129556 1.135589795 1.143346105 1.123394444 1.137661935 1.17071791 1.162889067 182679101 arsc Beijerinckia indica subsp. indica ATCC 9039 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Beijerinckia;species:Beijerinckia indica; 1.118426132 1.093427412 1.083959037 1.100456242 1.045617117 1.020565652 0.981054226 1.047091504 1.080766163 1.057101189 1.062636768 1.069400693 1.015198872 1.020346189 1.002625282 1.010147579 1.100338773 1.039256893 116670259 hyaluronidase Arthrobacter sp. FB24 Carbon Cycling Carbon degradation hyaluronic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 1.099127198 1.051751457 1.042500554 1.112258114 1.051827628 1.075453215 1.077347872 1.081145353 1.06363447 1.042159214 1.056778336 1.072081252 1.008604271 0.995869068 1.001214459 1.034753037 1.086705379 1.065742306 183581740 amyA Kocuria rhizophila DC2201 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Kocuria;species:Kocuria rhizophila; 1.116964447 1.170273271 1.076348693 1.126070984 1.040099336 1.126997302 1.051766857 1.078342207 1.094373383 1.11423688 1.080914753 1.091872555 1.032728708 1.064862784 1.001166704 1.089605545 1.102748338 1.131311322 212686911 ccmL Providencia alcalifaciens DSM 30120 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia alcalifaciens; 0.886769222 0.874014954 0.856378673 0.919964925 0.87591454 0.808732945 0.84809728 0.90862599 0.89475468 0.858259844 0.839021959 0.83230682 0.847663542 0.810871537 0.874855968 0.918671236 38426998 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.859972654 1.010644219 0.931586329 1.022424844 0.96465513 0.904028083 0.958348755 0.930141904 0.913056837 0.877071919 0.965516312 0.927927865 0.84839153 0.815155743 0.806704938 0.804335744 0.871102393 0.933791747 349600574 amyA Bacillus subtilis subsp. spizizenii TU-B-10 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus subtilis; 0.79915658 0.876149712 0.88749067 0.892956193 0.902448522 0.838155699 0.797377922 0.886164537 0.837536001 0.937038116 0.874869359 0.891677335 0.912623103 0.889239163 0.855115364 338212900 acetylglucosaminidase Runella slithyformis DSM 19594 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Runella;species:Runella slithyformis; 0.764214655 0.80021983 0.781745495 0.813601505 0.782926836 0.842308118 0.839503028 0.812201124 0.813255146 0.823175139 373555274 nhh Mycobacterium tusciae JS617 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tusciae; 1.224934782 1.199980902 1.212808297 1.219276002 1.184778338 1.197669104 1.170319235 1.196559255 1.218190697 1.20696292 1.183267146 1.207246641 1.180908238 1.159720925 1.155750558 1.175201773 1.218006174 1.207547619 319418520 sucD Nitratifractor salsuginis DSM 16511 Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;genus:Nitratifractor;species:Nitratifractor salsuginis; 0.950122768 0.963071188 0.933783992 0.953068506 0.908958692 0.956999905 0.900481957 0.919659252 0.933569065 0.975563541 0.885993533 0.901088794 0.883082365 0.978704431 0.954191075 0.896918094 0.951851995 0.959744222 171676904 phospholipase_D_fungi Podospora anserina S mat+ Carbon Cycling Carbon degradation Phospholipids superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Lasiosphaeriaceae;genus:Podospora;species:Podospora anserina; 0.808891346 0.823983776 0.840165091 0.817357625 0.771938215 0.833916573 0.806209446 389736919 amyA Rhodanobacter sp. 115 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Rhodanobacter; 1.140606295 1.140368534 1.083067149 1.139312885 1.083237259 1.131119117 1.056902385 1.077491024 1.097590202 1.109609444 1.084323188 1.103859555 1.082867869 1.09848109 1.04387634 1.078631959 1.14970288 1.124861463 256421605 amyA Chitinophaga pinensis DSM 2588 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;genus:Chitinophaga;species:Chitinophaga pinensis; 0.808478007 0.80547503 0.808554273 0.841326151 0.824123808 0.86203052 0.857949752 0.815499919 0.83297034 0.792856888 0.769227692 0.800268916 383822102 cbea Mycobacterium phlei RIVM601174 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium phlei; 1.105311536 1.051753903 1.073929232 1.12069053 1.075211062 1.103668154 1.06171454 1.06340011 1.107646179 1.05716767 1.071509077 1.082545737 1.049224315 1.030992359 1.052358049 1.052675545 1.106885324 1.025167805 294884061 aoxb bacterium enrichment culture clone aoxauto100_4w Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 0.885759186 0.900122441 0.809931212 0.893908331 0.863846161 0.869451214 0.837916746 0.882563587 0.855948777 0.847290161 0.880092488 0.950235493 83943402 mer Sulfitobacter sp. EE-36 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 0.820611336 0.815058785 0.849208617 0.829112719 0.85612501 0.843267837 0.842782221 0.799602583 0.876643024 0.840876224 0.877692654 0.846344725 0.862431608 0.851138219 238792136 fthfs Yersinia intermedia ATCC 29909 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia intermedia; 0.795688386 0.932507643 0.836418144 0.836250374 0.80843514 0.821252735 0.835022912 0.806544006 0.805227184 0.835996238 0.823873146 0.818313233 261857106 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.079725057 1.047475545 1.067908385 1.069972292 1.06202408 1.076123833 1.034341046 1.027920209 1.053368135 1.056760007 1.051816254 1.026570123 1.043551083 1.010249993 0.982117267 0.981652221 1.088493512 1.049634091 21232911 exaa(moxf) Xanthomonas campestris pv. campestris str. ATCC 33913 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas campestris; 1.425831272 1.399599805 1.400905357 1.424518328 1.390876874 1.41413875 1.396576542 1.361759779 1.39258868 1.375491593 1.408170009 1.41819614 1.384889216 1.36731493 1.394979498 1.410621325 1.404786429 1.367330461 395007215 mdlc Acidovorax sp. CF316 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 1.071782929 1.028592798 1.057170216 1.064364853 1.051552275 1.074711725 1.064457521 1.061070276 1.056256326 1.031818412 1.034953168 1.069720389 1.054319688 1.027702943 1.04268411 1.065812574 1.068150452 1.049834928 134075486 cellobiase Aspergillus niger Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 0.947030273 0.905745512 0.853496677 0.880555499 0.806531751 0.872537587 0.835165082 0.840893972 0.860436546 0.853785325 0.839749737 0.859659436 0.930471584 0.866888732 218762225 mer Desulfatibacillum alkenivorans AK-01 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfatibacillum;species:Desulfatibacillum alkenivorans; 0.906283406 0.923611728 0.849820672 0.933313378 0.876920628 0.863604338 0.878955656 0.918028215 0.902582241 0.873483809 0.859113287 0.927463016 0.840489018 0.890755963 0.924876581 119503487 FBP_aldolase marine gamma proteobacterium HTCC2080 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 0.811909005 0.856259815 0.853903909 0.853654221 0.836593506 0.882585376 0.85760309 12744277 nosz uncultured temperate forest soil bacterium CZ0143 Nitrogen Denitrification NA superkingdom:Bacteria; 0.761758912 0.790166457 0.789712539 0.816134577 114798230 linb Hyphomonas neptunium ATCC 15444 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Hyphomonas;species:Hyphomonas neptunium; 0.813054881 0.818151219 0.796927411 0.816808802 0.823871357 0.82571954 0.820185539 378763804 tktA Sinorhizobium fredii HH103 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium fredii; 1.055503107 1.039505955 0.979620443 1.041294084 0.998119156 1.034233991 0.988020542 0.987303859 1.031597654 1.005562455 1.014020736 1.023588608 0.998704172 0.993703713 0.966034265 0.990960169 1.027259289 1.00511248 290583238 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.934137329 0.919310712 0.953434659 0.927944988 0.885187935 0.919408255 0.914120074 0.913234996 0.981397212 0.944919624 0.906679885 0.984162578 0.861957982 0.889863816 0.908042056 0.894366752 0.955981128 0.97137302 356659618 badi Rhodococcus opacus PD630 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus opacus; 0.860389753 0.869750689 0.882213488 0.884807776 0.805961942 0.834025345 0.827643523 0.873691723 0.867117111 0.798050579 0.871687022 0.81340409 0.807943177 0.81753684 0.886852095 0.859906566 210069567 Glucose_oxidase_fungi Penicillium marneffei ATCC 18224 Carbon Cycling Carbon degradation glucose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces marneffei; 0.888902038 0.89396309 0.838171288 0.873793984 0.879737775 0.908718739 0.861246374 0.87105863 0.837623617 0.827896317 0.879280615 0.810613837 0.852714603 0.835133654 0.869737042 0.892667022 134034468 mer Bradyrhizobium sp. Is-D302 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.961705247 0.987887073 0.90979306 0.926357901 0.892450164 0.934724371 0.847699771 0.830508024 0.955738184 0.878758441 0.887483903 0.853265756 0.926133947 0.820247923 0.882476509 0.904762801 0.991459667 356690426 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.005566784 0.950721729 0.917302613 1.002658531 0.949828767 0.985655614 0.943803636 0.981616936 0.98044291 0.953124262 0.920171966 0.994966919 0.922843669 0.953756827 0.922579322 0.949393992 1.007905372 0.91652234 154279762 amyA Ajellomyces capsulatus NAm1 Carbon Cycling Carbon degradation Starch superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces capsulatus; 0.815706302 0.860324467 0.843214884 0.850844184 0.832796327 0.819736514 0.82455998 0.81214366 0.873352168 0.839129811 356413826 pgk Gluconobacter morbifer G707 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconobacter;species:Gluconobacter morbifer; 1.026142338 0.98461155 0.997390196 0.986049847 0.970240506 1.008946935 0.934879369 0.971383845 0.97858435 0.964584491 1.001466892 0.993093854 0.970894494 0.974964122 0.94590065 0.945131079 1.028168901 0.992726863 169866011 protease_serine_fungi Coprinopsis cinerea okayama7#130 Carbon Cycling Carbon degradation protein superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 1.03030524 0.983790541 1.001963821 1.04595198 0.973856394 0.993397815 1.001630801 0.998880685 0.981343842 0.957096849 0.91442809 0.963633097 0.967259416 148501508 vana Sphingomonas wittichii RW1 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 0.871296017 0.902046105 0.826493425 0.885717851 0.84398183 0.855478225 0.952317122 0.848423219 0.860179547 0.825174102 0.79649841 0.832974812 0.884048509 0.874969323 294676161 terc Rhodobacter capsulatus SB 1003 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter capsulatus; 0.839489553 0.803915678 0.885988872 0.846792364 0.832792166 0.817150657 0.837391079 0.813960835 0.795107871 0.827020387 0.846744743 0.886186887 192764484 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.873309394 0.876666605 0.895365911 0.942800217 0.879521899 0.880803759 0.921167317 0.828987105 0.874504044 0.922743058 0.877144641 0.89672261 0.895820109 0.860170347 0.836185142 0.913885419 0.956074144 0.975356067 359777820 amyA Arthrobacter globiformis NBRC 12137 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter globiformis; 1.189494857 1.174720061 1.087712855 1.070994546 1.149825394 1.185503703 1.123121944 1.116205165 1.065207438 1.091067207 1.086465109 1.066541338 1.076236887 1.057428536 1.021357599 1.065545803 1.090516592 1.093832701 92918950 acetylglucosaminidase proteobacterium AI21 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria; 0.7582013 0.788588241 261359895 exopolygalacturonase_fungi Verticillium albo-atrum VaMs.102 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticillium;species:Verticillium alfalfae; 0.865808953 0.82367521 0.826779424 0.873463781 0.824741652 0.796338567 0.856962629 0.892142904 0.8226372 0.804540783 0.879424559 0.82967982 0.827214452 0.893284929 0.858445324 78514625 catechol Bradyrhizobium sp. BTAi1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 1.411224149 1.343853438 1.367967207 1.377873567 1.32606336 1.395933358 1.337527792 1.369796283 1.359005584 1.329122104 1.346321007 1.337292568 1.315080719 1.282921297 1.288972726 1.329348626 1.433509907 1.339657632 146188529 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.860301061 0.857080745 0.839710587 0.799898108 0.818985411 0.819802976 239579601 tutfdg uncultured bacterium Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria; 0.877295378 0.828996439 0.805299017 0.865776958 0.893276954 0.889385912 0.824862104 0.875881025 0.860208786 0.890093529 0.971119483 0.825252688 0.873158821 0.843809217 0.892502801 0.918757259 0.826039365 336177492 amyA Frankia symbiont of Datisca glomerata Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 1.142839305 1.151813469 1.104650174 1.12561525 1.114285889 1.158831684 1.123702494 1.119089322 1.106832358 1.121557516 1.122666012 1.156846539 1.10958692 1.115842238 1.094115096 1.136172935 1.114901824 1.108526628 307594656 por_DiC4HB Vulcanisaeta distributa DSM 14429 Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Vulcanisaeta;species:Vulcanisaeta distributa; 1.12752831 1.131499669 1.12893831 1.143533925 1.15512645 1.158250959 1.11678958 1.11107057 1.101975321 1.143248436 1.140137332 1.191131604 1.091714556 1.107922806 1.067293292 1.11343033 1.109763285 1.110893798 311279053 CsoS1_CcmK Enterobacter cloacae SCF1 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter lignolyticus; 1.3432285 1.271520555 1.2889893 1.314198584 1.306061448 1.33925079 1.279408152 1.304770835 1.295201571 1.255050731 1.27021871 1.276760069 1.292701905 1.240641152 1.257358966 1.285249102 1.327344851 1.282483888 109452564 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.917510782 0.954098784 0.916505965 0.921854648 0.901631276 0.935733445 0.911060003 0.9031609 0.909014859 0.913454743 0.87863829 0.928037361 0.940619842 0.889486783 0.872868195 0.942658576 0.935685238 0.920478338 67901318 pec_Cdeg Aspergillus nidulans FGSC A4 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 0.982097198 0.993728277 0.97769785 1.01423699 1.001864769 1.008545717 1.005239646 1.013089136 1.017826882 0.959849931 0.988372285 0.970899514 0.945617444 0.902939274 0.896344438 0.915709462 0.997997334 0.920112118 261857046 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.809699643 0.928405404 0.88205991 0.805740552 0.85187695 0.794348968 0.839897972 0.900331986 192764344 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.83828703 0.865550873 0.838440363 0.811837314 0.819907606 0.82787555 0.843618608 0.79222131 0.847016835 0.844973982 0.851880922 2627157 bphF1 Acinetobacter sp. YAA Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 1.342954548 1.306366719 1.311407161 1.3309693 1.311100715 1.319928468 1.30730117 1.334228313 1.343026615 1.285746351 1.314206144 1.332581695 1.294081585 1.276395674 1.327155125 1.310697881 1.353217339 1.281608095 402569702 pcpe Burkholderia cepacia GG4 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cepacia; 0.825549615 0.844808811 0.882232236 0.790705333 0.83784043 0.820877475 0.845878655 0.828696735 288940304 PRK Allochromatium vinosum DSM 180 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Allochromatium;species:Allochromatium vinosum; 1.261571114 1.267058145 1.250581571 1.22938812 1.222400291 1.265205333 1.212764964 1.213751954 1.2313481 1.217661693 1.216727957 1.207302475 1.188075768 1.201780582 1.190221812 1.181474084 1.266609935 1.235739138 54027215 atzb Nocardia farcinica IFM 10152 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 1.134347244 1.153784063 1.137895202 1.144512136 1.099453427 1.176204465 1.112908669 1.124776012 1.104421804 1.11592276 1.110765687 1.134107828 1.095870131 1.096438241 1.125471469 1.127847999 1.176648878 1.117698999 8515797 mult_ring_12DiOx uncultured bacterium Organic Remediation Aromatics Other aromatics superkingdom:Bacteria; 0.990945932 0.976463381 1.008369003 0.981804979 1.025523373 1.005478919 0.963275106 0.954911119 0.983483541 0.971016276 0.979910575 1.010426319 0.964144566 0.985631306 0.981491171 0.951737082 1.003485386 1.017756085 256560559 acetylglucosaminidase Brachybacterium faecium DSM 4810 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dermabacteraceae;genus:Brachybacterium;species:Brachybacterium faecium; 0.95678528 0.98778478 0.878610851 0.973179939 0.878636496 0.920432823 0.920091253 0.923819931 1.027267654 0.946895062 0.895321542 0.927985082 0.887273738 0.892251597 0.839049857 0.875392065 0.95342918 1.014475793 302388959 xylj Thermosediminibacter oceani DSM 16646 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacterales Family III. Incertae Sedis;genus:Thermosediminibacter;species:Thermosediminibacter oceani; 1.095524413 1.067942493 1.092045691 1.076192271 1.099549495 1.090237304 1.071185945 1.097191984 1.063352282 1.068125699 1.071809619 1.088744553 1.068905287 1.052183591 1.067025748 1.0379222 1.095909081 1.047409239 149811306 dmdA Roseobacter sp. AzwK-3b Sulfur DMSP degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 1.074695932 1.051074603 1.038680154 1.066573277 1.000529429 1.072511315 1.030907923 1.052745125 1.069906398 1.049991909 0.974046425 1.045119517 0.984333059 0.982537434 0.922619033 1.012298067 1.040542396 1.035317669 304392546 tktA Ahrensia sp. R2A130 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ahrensia; 0.96522842 1.043572802 0.970780456 1.044739458 0.980249769 1.050530557 0.959572976 0.951665916 0.990867004 0.99672716 0.941875277 0.976852406 0.959195224 0.905367159 0.942450707 0.945800986 1.028160373 1.023375769 112464117 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.95134911 0.956983241 0.940955417 0.979770751 0.917377734 0.950850075 0.90795373 0.94471795 0.911890453 0.936190784 0.926807744 0.941836887 0.904369057 0.934802531 0.872857628 0.953829466 0.94774142 0.943568961 89071318 GAPDH_Calvin Oceanicola granulosus HTCC2516 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola granulosus; 1.054988493 1.084795019 1.047851141 1.07543009 1.039446533 1.083721921 1.036027518 1.025189159 1.033298321 1.065663852 1.025168524 1.049136082 1.065787751 1.040929098 1.009264716 1.061023289 1.092998464 1.058931822 404387680 chnd Turicella otitidis ATCC 51513 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;genus:Turicella;species:Turicella otitidis; 0.828733186 0.824733778 0.84164991 0.816820053 0.80563631 0.804276717 0.837559665 0.854373163 385204399 terc Burkholderia sp. Ch1-1 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 0.835035689 0.793736183 0.816048734 0.907171622 0.903724278 0.817278445 374584725 arsc Leptonema illini DSM 21528 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Leptospiraceae;genus:Leptonema;species:Leptonema illini; 0.872838467 0.871839454 0.878739544 0.846045077 0.874822607 0.880984567 0.887494808 0.879883873 0.871232891 0.889550003 0.841654251 0.836095643 0.851314072 0.845180718 0.879360988 0.893308142 219996403 GAPDH_Calvin Thioalkalivibrio sulfidophilus HL-EbGr7 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio;species:Thioalkalivibrio sulfidophilus; 0.823341801 0.921018218 0.836298192 0.834312741 0.834514686 0.825786962 0.841657749 0.818734843 54016526 catechol_b Nocardia farcinica IFM 10152 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 0.944100159 0.995651048 0.989149816 0.920882547 0.892443134 0.937182845 0.915163223 0.897656637 0.944207859 0.98161982 0.942467788 0.925116855 0.882381998 0.901621372 0.854464717 0.882489042 0.963113552 1.003475291 358245451 narg Gordonia araii NBRC 100433 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia araii; 1.232606927 1.207399226 1.194407032 1.210213326 1.177611915 1.221720999 1.168544001 1.194243579 1.186038429 1.182238647 1.179385849 1.18519981 1.182092197 1.19961349 1.151764306 1.188611293 1.2160322 1.209936605 145304821 exochitinase Salinispora tropica CNB-440 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora tropica; 1.140879434 1.151694148 1.125314 1.147781856 1.125017488 1.170793493 1.129593136 1.149522526 1.114440345 1.108358775 1.133399905 1.152795293 1.123223025 1.096179263 1.120750533 1.138902978 1.166578646 1.132173447 319418655 nosz Nitratifractor salsuginis DSM 16511 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;genus:Nitratifractor;species:Nitratifractor salsuginis; 0.943001517 1.016869216 0.943828098 0.990406397 0.998531932 1.038434773 0.99837211 0.984887924 0.959053493 1.053477661 1.028493692 1.024193291 1.035917981 1.014822513 0.941919641 1.005729777 0.97653945 1.011644178 325498660 one_ring_23diox Escherichia fergusonii ECD227 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia fergusonii; 0.904494008 0.899781504 0.905992682 0.90355208 0.951147497 0.886371083 0.904460628 0.896776521 0.916160107 0.907602534 0.881582504 0.92727996 0.818567438 0.834920562 0.847955663 0.84567098 0.912549361 0.897099374 56710254 nitro uncultured bacterium Organic Remediation Others NA superkingdom:Bacteria; 0.901734484 0.80581791 0.897777632 0.857896127 0.84270772 0.839922011 0.825834845 0.831952922 0.852379535 163260411 amyA Bordetella petrii Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella; 0.825813851 0.812950688 0.810160785 0.828596511 0.80606404 0.816629212 0.80947297 0.826711504 0.819880931 344342077 CsoSCA Thiocapsa marina 5811 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiocapsa;species:Thiocapsa marina; 0.794408449 0.799764048 372270101 catechol_b Marinobacterium stanieri S30 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacterium;species:Marinobacterium stanieri; 0.975080534 0.86420324 0.895052639 0.919785377 0.894794057 0.889726015 0.914033505 0.925550388 0.993551768 0.913186552 0.907053201 0.953754746 0.88872953 0.895079302 0.884300596 0.909150371 0.948551477 0.927094177 320150996 norb Thermus scotoductus SA-01 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus;species:Thermus scotoductus; 1.129092838 1.125067626 1.11511325 1.141695386 1.064319938 1.120882603 1.038737335 1.09220126 1.121165858 1.074811785 1.092500658 1.061875032 1.051976967 1.095553122 1.020279065 1.068439987 1.12136275 1.142916979 78223338 vdh Geobacter metallireducens GS-15 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter metallireducens; 1.043180885 1.015761141 1.026821387 1.04997773 0.994190303 1.030646786 0.993407489 0.97363626 1.027053186 0.977347003 0.988202629 0.980298699 0.944456796 0.95767825 0.999271835 0.946836094 1.037954645 1.006468488 50120908 endoglucanase Pectobacterium atrosepticum SCRI1043 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium atrosepticum; 0.877523013 0.823715241 0.824057883 0.877076841 0.826915865 0.818183895 0.834287103 0.868111475 0.88471601 0.865792955 0.804855631 0.857759303 0.830976163 0.836268377 0.841818743 157741864 rubisco Mycobacterium sp. DSM 3803 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 0.826313496 0.885507134 0.898018173 0.839202727 0.886252994 0.902772276 0.842959658 0.845482719 0.823311251 0.835740242 0.851133135 0.852489854 0.857045459 157409956 arsc Methylobacterium populi BJ001 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium populi; 0.9415497 0.920541723 0.96562526 0.985704234 1.003344144 0.990712934 1.021421006 0.998324223 0.937857579 0.959439178 0.994929548 0.947039619 0.938503312 0.929235136 0.833316826 0.88876364 0.999513547 1.008566651 307584525 pchcf Burkholderia sp. CCGE1003 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 0.906330385 0.872320921 0.864337547 0.900069459 0.83082373 0.898163453 0.868089773 0.869390447 0.855431171 0.835320556 0.847610023 0.821609444 0.881332903 0.851394561 0.885738099 0.926490521 389879540 hcaacd Tistrella mobilis KA081020-065 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Tistrella;species:Tistrella mobilis; 1.049819914 1.076715476 1.024890054 1.06029395 1.011901401 1.067939638 0.999735417 1.016711168 1.005810127 1.000730536 1.013864265 1.020606241 0.99516011 1.01832114 0.942693839 1.014703402 1.054181035 1.081219119 241773352 ara Asticcacaulis excentricus CB 48 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis excentricus; 0.811964756 0.796482701 0.859305752 0.819609716 0.82992898 0.796014813 0.812566994 350568109 norb Propionibacterium avidum ATCC 25577 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium;species:Propionibacterium avidum; 1.048597698 1.067320393 1.05806895 1.054007067 1.054746538 1.084466222 1.039691161 1.005460965 1.044844554 1.031151082 1.011438533 1.033927873 0.982064293 0.999024717 0.980957683 0.987142862 1.067012451 1.077569466 198263971 ppx Octadecabacter antarcticus 238 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 0.855510197 0.887783078 0.834150137 0.850496687 0.830321717 0.871683089 0.81845161 0.860967514 0.874719792 166087375 mer Microcystis aeruginosa NIES-843 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Microcystis;species:Microcystis aeruginosa; 1.315342266 1.302805013 1.297012327 1.317317552 1.313718008 1.298183505 1.293857946 1.309149851 1.282373543 1.2787034 1.299587975 1.312597853 1.292121961 1.244048009 1.288385138 1.274516973 1.311910884 1.234883461 319749884 cysI Isosphaera pallida ATCC 43644 Sulfur Other NA superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Isosphaera;species:Isosphaera pallida; 0.812223382 0.76916525 0.782608826 0.824657 83943572 nhh Sulfitobacter sp. EE-36 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 1.056553186 1.063432061 1.091775535 1.062661211 1.037800812 1.081617969 1.015698104 1.058874329 1.044580491 1.076895275 1.073963419 1.038615627 1.032122173 1.065735721 1.018959316 1.055994862 1.078732222 1.088057481 350548278 rgl Thermobacillus composti KWC4 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Thermobacillus;species:Thermobacillus composti; 1.218138967 1.197184668 1.187344602 1.190203813 1.225166872 1.221452714 1.187493892 1.196956711 1.196041539 1.207474915 1.200587556 1.189021295 1.189913827 1.156295655 1.146842668 1.160351797 1.221998554 1.201364674 374416893 cda Desulfosporosinus youngiae DSM 17734 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfosporosinus;species:Desulfosporosinus youngiae; 1.226930999 1.145978703 1.156580541 1.240882045 1.239534902 1.181997516 1.27289548 1.185881619 1.188191781 1.1679737 1.155969977 1.210609165 1.192960243 1.130912531 1.132435614 1.22924492 1.150734064 1.156379622 315604238 terc Actinomyces sp. oral taxon 180 str. F0310 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 180; 1.073961848 1.020737172 1.157390261 1.098005175 1.027032371 1.046936796 1.047762609 1.087467434 1.072427296 1.029469277 1.021539904 1.061118059 1.007163428 0.992218171 1.002166472 1.042989248 1.076927829 1.031316584 355382638 CsoS1_CcmK Clostridium clostridioforme 2_1_49FAA Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium clostridioforme; 1.176546004 1.167398379 1.144062493 1.154170099 1.165870707 1.161618375 1.148493432 1.135795797 1.118106152 1.162655531 1.143542595 1.151016603 1.125024007 1.087477635 1.114787457 1.126952386 1.129633208 1.150593737 338737267 gdh Hyphomicrobium sp. MC1 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium; 0.791502491 0.892838927 0.793182693 0.821555598 0.810882742 0.836289113 0.852076888 0.820627741 0.863159125 0.882475757 0.820156815 0.827784535 0.865485406 0.848914447 0.819708322 0.854500417 0.891202982 29610583 endochitinase Streptomyces avermitilis MA-4680 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 1.22773747 1.182906547 1.182129408 1.203489191 1.190784299 1.202400491 1.182982539 1.205998363 1.182963049 1.151400405 1.150828392 1.192640407 1.175787387 1.172513641 1.195240973 1.190282347 1.207050279 1.150551241 333937035 cellobiase Novosphingobium sp. PP1Y Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 1.200467967 1.156344355 1.152308646 1.1876747 1.14817346 1.219682992 1.158045832 1.202050747 1.176253762 1.141814619 1.147685999 1.181570716 1.152119348 1.139610216 1.131816984 1.150004692 1.217730068 1.15669953 63256670 vdh Pseudomonas syringae pv. syringae B728a Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae; 0.772651452 0.799212619 0.831411163 0.781559561 0.82141221 0.855979558 316254870 amyA Segniliparus rugosus ATCC BAA-974 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Segniliparaceae;genus:Segniliparus;species:Segniliparus rugosus; 1.069718856 1.062016234 1.025163057 1.087978819 1.037689492 1.046285374 1.047294543 1.026205857 1.073545367 1.022484061 1.003344002 1.039016851 1.004346829 1.004400678 0.975808618 1.035966016 1.070985904 1.036091631 59894154 hsp90_Stramenopiles Phaeodactylum tricornutum Other Phylogenetic NA superkingdom:Eukaryota;phylum:Bacillariophyta;class:Bacillariophyceae;order:Naviculales;family:Phaeodactylaceae;genus:Phaeodactylum; 0.793889099 0.802528537 0.81205878 0.830478249 0.813547087 0.823504964 0.790030748 0.847748575 0.78968649 0.854291479 386381246 chitinase Streptomyces tsukubaensis NRRL18488 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces tsukubaensis; 0.960928507 1.008756916 1.02316548 1.043218878 1.022467825 0.98808357 0.976482624 1.016223912 1.008806516 1.005280063 0.993673743 1.021285209 1.003242982 1.020249445 1.003109662 0.998663608 1.015640637 1.016692875 240169888 ppx Mycobacterium kansasii ATCC 12478 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium kansasii; 1.221157065 1.211611779 1.187779534 1.170654876 1.156277547 1.224194211 1.141483543 1.163995166 1.154127241 1.178053392 1.166464003 1.185227031 1.135438706 1.174074792 1.168484508 1.162562151 1.205272042 1.220277762 328934495 cysI Paenibacillus sp. HGF5 Sulfur Other NA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 0.981457211 0.982302035 0.931819184 0.956629453 0.936539127 0.996183299 0.966043887 1.031129339 0.992866548 0.949340075 0.941212056 0.989321773 0.920562508 0.925196884 0.900139527 0.911218886 0.941835002 1.001777738 157679103 rubisco Acidithiobacillus thiooxidans Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus; 1.28824197 1.240876022 1.216187837 1.252308178 1.209191935 1.231847367 1.208452673 1.250134953 1.239713445 1.211930356 1.22621557 1.238712396 1.203040718 1.199118709 1.208279934 1.221128581 1.288643385 1.222888912 223587960 aromatic_peroxygenase Agrocybe aegerita Organic Remediation Aromatics Other superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Bolbitiaceae;genus:Agrocybe; 0.947697731 0.94369684 0.893865657 0.979150017 0.875144502 0.967437906 0.899338594 0.936434637 0.943605444 0.936734817 0.882680422 0.908085716 0.87597879 0.899660442 0.869763179 0.86808107 0.952206651 0.979633496 177841041 amyA Opitutus terrae PB90-1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 1.117534814 1.150369697 1.104367656 1.113829884 1.107446018 1.150381215 1.083282774 1.09235851 1.091522497 1.120850234 1.090648458 1.108634826 1.10995423 1.090479519 1.078429716 1.084420797 1.141428854 1.13702814 18160974 dsrB Pyrobaculum aerophilum str. IM2 Sulfur sulfite reduction NA superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum aerophilum; 0.841462071 0.853995365 0.834326632 0.909976455 0.876141327 0.882067193 0.833487752 0.873008853 0.84319885 0.875986699 1.059271664 0.848912863 0.889438313 0.838536857 0.838555615 0.855269028 0.895427332 73763106 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.862322487 0.878037285 0.803219919 0.872173646 0.837947128 0.837086522 0.831975075 0.799417334 0.86910553 0.819131849 0.86077518 0.83264398 0.843926262 0.824177935 0.834131661 0.879036686 209570250 pec_Cdeg Glomerella graminicola Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Glomerellaceae;genus:Glomerella; 0.934924638 0.971044636 0.952665891 0.924200986 0.952278296 0.932163002 0.900653343 0.930599216 0.973740351 0.932578353 0.958717463 0.915169044 0.894030018 0.829833568 0.86825853 0.875017533 0.905028274 0.926584139 109452443 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.01089697 0.9615656 0.996858533 0.960923796 1.012540253 1.007311922 1.028017332 1.013333855 0.996607486 0.998098212 0.993669547 0.981670385 0.999976055 0.933150962 0.940806223 0.939843207 0.985526454 0.975688257 401669366 xylg Arhodomonas sp. Seminole Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Arhodomonas; 1.200185558 1.183647288 1.182908065 1.183381695 1.183888796 1.225838246 1.160699752 1.182086721 1.186242156 1.186846405 1.159904816 1.183276045 1.205553851 1.183435628 1.190829321 1.190579177 1.253179861 1.188630818 306487927 nirs uncultured organism Nitrogen Denitrification NA 0.861997679 0.836768133 0.842382824 0.815866393 0.803662238 0.829723817 0.850513732 0.818706369 0.831844486 0.825610427 334145627 vana Novosphingobium sp. PP1Y Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 0.777219036 0.838070292 13236850 one_ring_23diox Pseudomonas sp. Cam-1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.94087877 0.903648329 0.939050751 0.940185215 0.852430562 0.913177176 0.826843955 0.944324357 0.954593635 0.888456212 0.863777617 0.873837012 0.828614542 0.86351755 0.833601444 0.873215773 0.940824519 0.938620115 192764372 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.94904498 0.932146774 0.855214765 0.926188539 0.888494315 0.897502659 0.895937658 0.915092367 0.890437176 0.879545972 0.888890943 0.927793463 0.80951107 0.921236815 0.983558926 12539415 catb Burkholderia sp. NK8 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 0.873006904 0.864250996 0.878978424 0.870288899 0.966615044 0.893843465 0.837755269 0.790923229 0.886563251 0.875118785 0.866805475 0.892437726 0.886671557 0.83177718 0.872938226 0.967442004 0.854625329 336300064 endoglucanase Paenibacillus mucilaginosus KNP414 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 0.919051985 0.944571559 0.914216621 0.965187997 0.953852419 0.948292042 0.891067478 0.925529967 0.885520587 0.949572429 0.895140448 0.953696665 0.88973681 0.922873084 0.863017608 0.921444058 0.90961107 0.936741288 4160592 rubisco Bradyrhizobium japonicum Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 1.065946569 1.107569275 1.071388941 1.073487486 1.079486637 1.069659751 1.085694995 1.078208291 1.074037806 1.048521866 1.070769688 1.083878726 1.076969757 1.025484285 0.992190841 1.045117563 1.070874833 1.055761707 212705332 atza Providencia rustigianii DSM 4541 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia rustigianii; 0.887840366 0.882436447 0.889370252 0.887658253 0.858032008 0.883575296 0.936731322 0.900244745 0.876760299 0.894696511 0.99188948 0.904715015 0.814233261 0.854946129 0.862351177 0.909784418 209498900 tktA Burkholderia sp. H160 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 0.894764381 1.008763122 0.821470351 0.977921773 0.929905431 0.958479497 0.83593993 0.86702523 0.919586724 0.922571838 0.83984245 0.872979784 0.899410003 0.891538564 0.867228253 0.916460401 0.998203383 385856557 ppk Neisseria meningitidis NZ-05/33 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria meningitidis; 0.866980542 0.872982971 0.870608228 0.869133334 0.885106163 0.900889439 0.859828798 0.871317407 0.808862279 0.836546025 0.837895323 0.90566924 0.88912988 119483664 alpha_galactosidase_fungi Neosartorya fischeri NRRL 181 Carbon Cycling Carbon degradation Other superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 0.899799382 0.810983791 0.826027251 0.898318101 0.804083123 0.852111964 0.825366454 0.8766088 0.883497636 0.849740868 0.799265237 0.841257192 0.861233973 0.88587348 0.851664695 377572030 bphd Gordonia terrae NBRC 100016 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia terrae; 1.004357834 1.024071534 0.996245754 0.994741872 0.932084786 0.964969196 0.955299801 0.939605119 0.986503249 1.012628387 0.960641876 0.978886238 0.9331661 0.938331548 0.920847514 0.932369345 0.997394238 1.027468491 133778534 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 0.851499778 0.778031145 0.872213537 0.856657159 0.89685476 0.810607303 0.908429189 0.899278843 0.85926126 0.882377563 0.898974485 0.899080879 0.80674653 0.786594016 0.82011582 0.800244001 0.877810683 0.885658658 87125358 endochitinase Synechococcus sp. RS9917 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 0.797548676 0.85165723 0.84357683 0.826256832 0.813226775 0.845875186 0.817821638 0.892621686 0.919948456 0.812797266 0.904072595 0.780652012 0.847759431 0.861599448 0.91730269 0.834274667 307949846 rubisco uncultured bacterium Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria; 0.874623664 0.851946696 0.876603198 0.868939745 0.812709789 0.838413431 0.865943755 0.825997785 0.820140823 0.868890642 0.845874822 54024814 nagg Nocardia farcinica IFM 10152 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 0.939223072 0.978306258 0.88132849 0.905149463 0.893435017 0.92212388 0.872316347 0.905739568 0.913148561 0.92887046 0.890219535 0.925566406 0.904486921 0.887804629 0.871145029 0.868162992 0.930095565 0.941507496 377561084 catechol Gordonia otitidis NBRC 100426 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia otitidis; 1.281751746 1.246402435 1.264692534 1.268724178 1.242046865 1.277505727 1.26249941 1.25436465 1.267475746 1.275314563 1.272753016 1.279182579 1.228813975 1.214933109 1.215059122 1.234647437 1.306102272 1.278957717 40742304 tannase_Cdeg Aspergillus nidulans FGSC A4 Carbon Cycling Carbon degradation Tannins superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 1.094585905 1.040552738 1.085543568 0.969991226 1.130575542 1.034353428 1.115429565 0.969115989 1.017311025 1.146464396 1.092441571 1.040581252 1.087946545 1.17815377 1.024117332 0.99856344 1.003248744 1.048527243 77456903 trzn Pseudomonas fluorescens PfO-1 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 1.050179638 1.089826953 1.029956403 1.052742 1.028661239 1.114050994 1.006723393 1.019909809 1.040104292 1.060039542 1.012092832 1.057616861 1.003396121 1.005896031 0.992834144 1.014936266 1.095959004 1.094128382 134094017 dehh Herminiimonas arsenicoxydans Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herminiimonas; 0.764130817 0.883590984 0.773679961 0.825225904 407886153 poba Saccharothrix espanaensis DSM 44229 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharothrix;species:Saccharothrix espanaensis; 1.387587645 1.296155963 1.261825399 1.294989397 1.257513241 1.290058012 1.230493982 1.254864755 1.234439721 1.268819407 1.297122789 1.28684018 1.259764065 1.233685843 1.238767222 1.222159513 1.272634711 1.262467191 357974394 mannanase Sphingomonas sp. KC8 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 0.782138677 0.828011035 0.819150067 0.789838537 0.823439988 0.814090946 0.793124333 0.793973903 0.849931918 77378719 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.02530127 1.154768918 1.110965626 1.042066786 1.032817402 1.077999729 1.023096776 1.070634669 1.060833894 1.013280361 1.09643385 1.051288568 0.979788308 0.990828193 0.988167498 1.128081609 1.051551949 1.014182174 41350153 urec Saccharopolyspora spinosa Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora; 0.991664714 0.991990768 1.005763954 1.045092319 1.041881756 0.993125613 1.01008303 1.049488688 1.02025113 0.970366233 0.995674733 1.022995324 0.950790295 0.933768985 0.941661537 0.955602556 1.023287775 1.024020585 302556649 pcpb Streptomyces griseoflavus Tu4000 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseoflavus; 0.781976034 0.80155444 0.799610459 0.845185 0.796757153 0.79365084 0.827381122 317165906 mer Mesorhizobium ciceri biovar biserrulae WSM1271 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium ciceri; 0.96009702 0.9569815 0.944409291 0.964148352 0.941192862 0.951429362 0.928127108 0.995243121 0.963479786 0.962287362 0.955657255 0.955515889 0.91666524 0.949909906 0.907438038 0.940925141 0.966264212 0.957228552 209401910 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.224866929 1.125051624 1.176551655 1.216284116 1.17983959 1.251660852 1.201137049 1.207114956 1.197137512 1.151859007 1.18929034 1.149030674 1.148865592 1.127166498 1.090737643 1.140927156 1.20822465 1.156712297 357079865 mhpb Frankia sp. CN3 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 0.972429129 0.968913943 0.958964895 0.96735658 0.995568395 0.957659969 0.965507413 0.972847438 0.981176294 0.973660052 0.966010431 0.941777762 0.959463391 0.910552972 0.871257169 0.921332048 0.976354636 0.960121806 229823775 fthfs Catonella morbi ATCC 51271 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Catonella;species:Catonella morbi; 0.891214306 0.905371628 0.897237583 0.920698912 0.861910352 0.89317108 0.905530078 0.909184765 0.922779231 0.906213835 0.857585404 0.922089507 0.839523417 0.877707031 0.828568329 0.843203747 0.921127849 0.925512777 104780601 narb Pseudomonas entomophila L48 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas entomophila; 1.143291875 1.138134159 1.127798452 1.161100889 1.137575117 1.124629202 1.124171784 1.137965495 1.140408961 1.119081702 1.119643172 1.13933573 1.114120222 1.057742035 1.099029431 1.086074283 1.136612555 1.112368583 109632821 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.896827388 0.931536346 0.921719708 0.858768914 0.928399246 0.934315031 0.891568114 0.89264411 0.905762983 0.91404025 0.878287387 0.877128272 0.899468626 0.864874344 0.882609586 0.913990691 0.891638496 296093581 pcag Thermobispora bispora DSM 43833 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Thermobispora;species:Thermobispora bispora; 1.071565135 1.038597598 1.039420718 1.052967947 0.970882094 1.049800382 0.97503883 1.012713017 1.054037912 1.013070676 1.021945526 1.011446871 0.998281556 1.019159039 0.970952729 1.002627684 1.010122017 1.023571192 372005745 thl Holophaga foetida DSM 6591 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Acidobacteria;class:Holophagae;order:Holophagales;family:Holophagaceae;genus:Holophaga;species:Holophaga foetida; 0.876642961 0.872371184 0.812269266 0.867820617 0.82986955 0.804651842 0.854802423 0.876417491 0.821551735 0.803343801 0.855326563 0.862827322 0.921692855 124261284 xylj Methylibium petroleiphilum PM1 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 1.107163129 1.070927479 1.069947711 1.085104138 1.060927864 1.089992143 1.070750702 1.103766157 1.08696284 1.078849482 1.062632868 1.094786803 1.072421529 1.024307876 1.01432283 1.054863352 1.115439348 1.066304501 337270301 pcag Mesorhizobium opportunistum WSM2075 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium opportunistum; 1.011185497 1.121769337 0.998513101 1.117628752 1.021611415 1.095551199 0.972889994 0.998689461 1.061598614 1.102571263 0.969220675 1.112490903 1.058455348 1.076901603 0.988768519 1.049376182 1.084364378 1.09513676 194540314 ppk Vibrio sp. Ex25 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 1.085187216 1.048325975 1.025359353 1.088436902 1.055494353 1.056284645 1.049058553 1.089298623 1.088087378 1.026653176 1.002311602 1.052997273 1.068411587 1.004510189 0.994615949 1.01889009 1.054130393 1.044141904 118589173 ppx Stappia aggregata IAM 12614 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 1.163979407 1.093235594 1.120114036 1.180874412 1.110528207 1.131668821 1.112000897 1.119881926 1.145506337 1.147888274 1.115892103 1.119127898 1.065150509 1.044994131 1.029964837 1.097234927 1.147372044 1.057861476 83952563 SoxB Roseovarius nubinhibens ISM Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius;species:Roseovarius nubinhibens; 1.002999544 0.985497922 0.90459774 0.964466836 0.956115177 0.982426535 0.920684738 0.956408725 0.94075361 0.942214809 0.910182124 0.979209986 0.897082564 0.973052883 0.885212001 0.929710779 0.978770433 0.994287806 157285668 napa uncultured bacterium Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria; 0.902089498 0.854796116 0.8513628 0.878807832 0.848796876 0.810480697 0.815323673 0.876162731 0.828637308 0.811762326 0.861076009 0.841253355 0.813947024 109452500 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.165256295 1.180525423 1.118918356 1.132737086 1.135872969 1.161932528 1.129194648 1.140130302 1.140840363 1.144468049 1.104495952 1.143470633 1.101593719 1.115688163 1.085916759 1.109197614 1.136308259 1.170516098 297565147 xyla Meiothermus silvanus DSM 9946 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Meiothermus;species:Meiothermus silvanus; 1.355736909 1.336420711 1.310722106 1.324175957 1.284567444 1.288262447 1.298602004 1.316512878 1.329025823 1.3097428 1.289414592 1.360647117 1.285768305 1.289239309 1.290502226 1.293140221 1.314473734 1.305147319 62003575 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.197636853 1.144529927 1.168795276 1.170504 1.165916944 1.182297836 1.16994203 1.179255742 1.158716826 1.160564442 1.179452639 1.160344304 1.129427497 1.086385789 1.094387888 1.0988066 1.172833778 1.134493615 349796919 sqr Thiorhodospira sibirica ATCC 700588 Sulfur Sulfide Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thiorhodospira;species:Thiorhodospira sibirica; 1.259888978 1.18491155 1.192481147 1.217759728 1.205266653 1.213902925 1.20458752 1.221447471 1.206465861 1.190521888 1.19819506 1.222455113 1.180659739 1.138375862 1.142407415 1.174491674 1.207396517 1.184525946 42493191 tfdb Pseudomonas sp. WZ-2003 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 1.262917695 1.228985099 1.221889926 1.236141892 1.223404612 1.266079259 1.219017928 1.222715641 1.208625591 1.214662438 1.20958812 1.223596619 1.235509192 1.210305847 1.217552692 1.245055203 1.240943742 1.228872591 293394897 nitro Serratia odorifera DSM 4582 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia odorifera; 0.96947829 0.903386872 0.899831451 0.954225375 0.934362313 0.950082764 0.88228033 0.915868097 0.906495504 0.876446214 0.856471973 0.865615528 0.889531482 0.871329915 0.872230297 0.874661804 0.964931311 0.949483079 209547726 dehh Rhizobium leguminosarum bv. trifolii WSM2304 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 0.821712057 0.801325529 0.834804558 0.843079968 209899248 dmsa Enterobacter cancerogenus ATCC 35316 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter cancerogenus; 0.749972548 0.819705176 17743141 vdh Agrobacterium tumefaciens str. C58 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 0.871239744 0.860144552 0.863401167 0.847180869 0.838791655 0.837575638 0.852217258 0.869207805 0.856682664 0.821520546 0.833510638 0.815434252 0.843402802 0.809842266 0.853059947 0.859064145 0.876225313 324106170 cellobiase Sphingomonas sp. 2F2 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 0.80811001 0.855926564 0.839188465 0.809384601 0.795099937 0.820641816 0.83517172 0.817505108 0.77898513 0.858568127 409406032 arylest Herbaspirillum sp. GW103 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herbaspirillum; 1.139082214 1.152567074 1.10067752 1.129029061 1.125897478 1.10953001 1.096797703 1.092116887 1.100222837 1.118237066 1.112085495 1.11424628 1.092768474 1.092707957 1.053902224 1.09815838 1.109216741 1.113967119 169258899 ppx Anaerofustis stercorihominis DSM 17244 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Eubacteriaceae;genus:Anaerofustis;species:Anaerofustis stercorihominis; 0.825289158 0.779084096 0.906900667 0.838556642 0.969133267 1.077216652 0.980371491 0.799929393 1.068635673 1.040720352 0.996306554 1.046550441 1.037941386 0.975206791 1.025118997 0.847003757 0.825469793 308812147 terc Ostreococcus tauri Metal Homeostasis Tellurium Detoxification superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Mamiellophyceae;order:Mamiellales;genus:Ostreococcus; 0.924045321 0.911507333 0.918667447 0.946783587 0.891731395 0.896462788 0.907316592 0.916892006 0.941727048 0.904945465 0.898917945 0.915978832 0.897961923 0.883180489 0.884283453 0.828133383 0.929484479 1.301903517 324319247 pme Bacteroides salanitronis DSM 18170 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides salanitronis; 1.172750552 1.068495244 1.06214538 1.098583946 1.084696057 1.062615668 1.015969226 1.06403613 1.073498066 1.054430219 1.05960447 1.059410284 1.058373848 1.034539518 1.013679547 1.003963677 1.081289011 1.076148902 53854604 dsrB Desulfovibrio aerotolerans Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 1.072513025 0.978557583 0.921191766 0.987058804 0.981468938 1.076053724 0.93665377 0.992451529 0.920933068 0.941254434 0.863275748 0.980899954 0.93142199 1.057797664 0.91529808 0.948838593 1.065086349 0.993511561 89055666 PRI Jannaschia sp. CCS1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Jannaschia; 1.479239853 1.440488832 1.423490423 1.44808596 1.408509168 1.467148492 1.38855943 1.415680389 1.417461987 1.414415085 1.412324781 1.435187878 1.411373431 1.378671651 1.409345516 1.413900321 1.477183831 1.426759442 259476500 amyA Brevibacterium fuscum Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Brevibacteriaceae;genus:Brevibacterium; 1.085928814 1.098859948 1.195686781 1.097837192 1.132527614 1.128339701 1.065870818 1.077265947 1.108535455 1.144546611 1.08725285 1.097462669 1.078194987 1.130328506 1.060504168 1.072218307 1.110180072 1.108221195 19887269 dsra Methanopyrus kandleri AV19 Sulfur sulfite reduction NA superkingdom:Archaea;phylum:Euryarchaeota;class:Methanopyri;order:Methanopyrales;family:Methanopyraceae;genus:Methanopyrus;species:Methanopyrus kandleri; 0.812126159 0.820457628 310823461 chitinase Stigmatella aurantiaca DW4/3-1 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 0.975739321 0.982899504 0.975626624 0.999246788 0.950900948 0.995126834 0.969200692 0.993664616 0.955400556 0.959777576 0.948189622 0.95317862 0.970290754 0.952286668 0.952307077 0.972053315 0.945814764 0.984591884 193225362 alkk Cupriavidus taiwanensis LMG 19424 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus taiwanensis; 1.042703372 1.009377417 1.036234138 1.014008206 0.943868758 0.981979524 0.940981674 0.968668793 1.002367234 1.005954002 0.999631144 0.977656384 0.972448975 0.979253125 0.924990427 0.937476481 1.02291008 1.006933837 69301315 fthfs Silicibacter sp. TM1040 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 1.281472973 1.231500687 1.298704653 1.245883609 1.258775819 1.347032301 1.210074119 1.22482488 1.238016936 1.247458644 1.226983875 1.263846193 1.187307445 1.248576768 1.230263788 1.250808067 1.261513326 1.222520548 407429981 fcba Nitratireductor indicus C115 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Nitratireductor;species:Nitratireductor indicus; 1.103646027 1.066667926 1.083217305 1.080497273 1.015425235 1.060498409 1.034075465 1.027605867 1.069738427 1.071509802 1.032970182 1.045528101 1.023240699 1.005401383 1.036648697 1.013788973 1.086976008 1.065658985 160890884 ara Bacteroides uniformis ATCC 8492 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides uniformis; 0.96195018 0.967872219 0.975688608 0.96532068 0.989200744 0.945705294 0.967587654 0.971946724 0.959679089 0.926999751 0.959244297 0.932752204 0.896776826 0.911988727 0.899152103 0.899660578 0.933860301 0.978083649 380736720 ppx Pantoea sp. Sc1 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 0.8404191 0.829363284 0.812547525 0.857923292 0.808027809 0.803605207 0.802851743 0.829565023 0.811226038 0.80603215 0.862377545 0.874915058 45679 xylg Pseudomonas putida Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.932801638 1.022371764 0.928050145 0.920605773 0.940442454 1.000081497 0.917977938 0.914493414 0.931638943 0.989239033 0.916153697 0.946190399 0.920197925 0.940433876 0.932909242 1.022877932 0.952788265 1.006432361 90954557 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.245641315 1.203980344 1.199228032 1.199029058 1.184676121 1.225421076 1.202030202 1.180536849 1.179083336 1.211486653 1.184419062 1.183184189 1.173124002 1.193798672 1.158615713 1.181424086 1.181981273 1.196794537 51855026 terc Symbiobacterium thermophilum IAM 14863 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XVIII. Incertae Sedis;genus:Symbiobacterium;species:Symbiobacterium thermophilum; 0.886194266 0.862270031 0.927995341 0.995441511 0.921286639 0.911867766 0.874112594 0.923632697 0.925480551 0.89985314 0.864950452 0.943225882 0.899222104 0.913641489 0.904322333 0.932601158 1.005246873 0.911134958 108801912 linb Mycobacterium sp. MCS Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 0.99006101 1.121483003 1.015698412 0.973671181 0.961681173 0.956241455 0.918346151 0.929024339 0.962762095 0.94730883 0.971550016 0.976448342 0.901229715 0.934700364 0.949879439 0.893979418 0.968350085 0.999143252 255502811 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.846427668 0.81395166 0.76529889 0.838420398 0.813469257 0.810563222 0.816071283 0.810901489 0.799324165 0.812176912 0.822516683 0.84140977 365846345 amyA Yokenella regensburgei ATCC 43003 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yokenella;species:Yokenella regensburgei; 0.79557161 0.823561524 0.794771162 0.832846698 0.817257353 0.80856551 0.818892157 0.78778113 0.810915203 0.811960193 408779965 bphF1 Mycobacterium kansasii ATCC 12478 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium kansasii; 0.921043636 0.855528427 0.902458494 0.864045956 0.844737202 0.933158607 0.833476661 0.877702327 0.881428611 0.870075822 0.89325078 0.796024317 0.840500231 0.824751331 0.873801833 0.898510323 339887036 cysJ Neisseria macacae ATCC 33926 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria macacae; 1.093774059 1.101509819 1.059394877 1.119566025 1.065433928 1.100570217 1.094625463 1.099883616 1.04625354 1.065338816 1.03766483 1.099909864 0.98390667 0.992517276 0.955639539 1.036345375 1.115615753 1.081671547 2293079 xylg Sphingomonas sp. Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 1.120037937 1.091536167 1.058568951 1.047358433 1.034878936 1.018586383 1.030731599 1.042006889 1.057964379 1.044774887 1.043769521 1.061447738 0.981749775 1.032087854 0.967715235 0.968350649 0.96182798 1.088464762 386772499 acetylglucosaminidase Brachybacterium paraconglomeratum LC44 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dermabacteraceae;genus:Brachybacterium;species:Brachybacterium paraconglomeratum; 0.753531321 0.784346975 383775931 ppx Actinoplanes missouriensis 431 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes;species:Actinoplanes missouriensis; 1.239976572 1.21918719 1.237979362 1.252236639 1.269481147 1.259842398 1.230095417 1.247740068 1.211691624 1.233630774 1.20211333 1.223946517 1.212803895 1.189877968 1.177515856 1.187681293 1.251652696 1.24473541 222354086 hao uncultured bacterium Nitrogen Nitrification NA superkingdom:Bacteria; 0.895467334 0.930854299 0.888974912 0.865078966 0.831481921 0.850479289 0.870355145 0.90264775 0.925264625 0.874396911 0.834262102 0.922116498 0.967612016 350526390 mer Candidatus Burkholderia kirkii UZHbot1 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Candidatus Burkholderia kirkii; 0.884952292 0.907464575 0.855228286 0.878210961 0.916594035 0.898791404 0.925717908 0.898435171 0.884269702 0.88058341 0.875493709 0.884731767 0.872036327 0.848236025 0.884887221 0.862155717 0.87068009 0.879360262 330469331 chitinase Verrucosispora maris AB-18-032 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Verrucosispora;species:Verrucosispora maris; 0.930604629 0.905684925 0.987080773 1.009448948 0.970316767 0.944379164 0.997346701 0.950162703 1.046017458 0.971768713 1.092834989 0.997727706 0.929205186 0.865040092 1.043497959 0.991550849 1.053138977 1.008887862 365417573 tktA Bradyrhizobium sp. STM 3843 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 1.070123613 1.120175655 1.026108939 1.085227853 1.058165301 1.056893 1.084480389 1.091013499 1.122678833 1.071875111 0.990229869 1.064531645 1.048037652 1.075587267 0.938629162 0.985137451 1.040685293 1.108965077 299071804 nitrilase Ralstonia solanacearum CFBP2957 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 0.795528884 0.790869629 0.768215613 0.808521099 0.838764913 0.829171035 0.850337254 0.869315332 21220991 cellobiase Streptomyces coelicolor A3(2) Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 1.039126219 1.066973919 1.037050004 1.03033011 1.037383484 1.105330566 1.039431071 0.997829873 1.037061025 1.099805421 1.060018977 1.055306759 1.062728219 1.104361856 1.034688446 1.083220089 1.061388723 1.065507672 379999256 amyA Deinococcus gobiensis I-0 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus gobiensis; 1.073467913 1.082245642 1.023034803 1.078486148 1.002431384 1.048009399 1.020092151 1.062795988 1.057296407 1.067504818 1.00642245 1.048087612 0.995032826 1.009408096 0.979306122 1.015324966 1.070327598 1.084219777 27379080 ppx Bradyrhizobium japonicum USDA 110 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 0.798768491 0.804926843 167772155 ppk Anaerotruncus colihominis DSM 17241 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Anaerotruncus;species:Anaerotruncus colihominis; 0.846641087 0.83811391 0.874963184 0.810071175 0.819659186 0.884186122 0.872288388 0.895502843 0.842814771 0.868939036 0.867932179 0.854056994 0.817192389 385736914 exaa(moxf) Bradyrhizobium sp. WSM1253 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.934517514 0.820316954 0.800705173 0.876206551 343919567 PRK Thiorhodococcus drewsii AZ1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiorhodococcus;species:Thiorhodococcus drewsii; 1.298110905 1.317232118 1.259619995 1.319584604 1.291031031 1.256655463 1.301452517 1.301734526 1.316583757 1.237789647 1.277399544 1.284220807 1.257720045 1.237541857 1.312438079 1.244698467 1.262161386 1.280718741 157804813 aps_apra Chromatium okenii Sulfur adenylylsulfate reductase NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Chromatium; 1.09793399 1.027258672 1.044011706 1.051964368 1.047284343 1.042516493 1.057032869 1.045392113 1.027546898 1.043032855 1.047475641 1.059352859 1.031859665 0.983589452 1.004930382 1.037368268 1.036770766 1.034592977 134142929 alkb uncultured bacterium Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria; 1.173625524 1.183295897 1.132413066 1.22531945 1.159936342 1.203797498 1.196807097 1.186982253 1.196628387 1.131927505 1.161325355 1.188431395 1.148472259 1.129633926 1.122386536 1.124262553 1.200255782 1.143196565 118122608 rubisco uncultured beta proteobacterium Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria; 0.82376053 0.837265064 0.849948282 0.867190916 0.795398259 0.783865392 0.806489052 0.826380915 0.830644757 0.80558713 0.841589447 0.808877293 0.832658201 66850793 arsc Aspergillus fumigatus Af293 Metal Homeostasis Arsenic Detoxification superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Aspergillus fumigatus; 0.826321969 0.878515244 0.817858586 0.845572344 0.850674825 0.842407805 0.803070022 0.800848253 0.808174217 0.797307366 0.812004907 0.834563696 0.860922736 298509760 dsra Desulfonatronospira thiodismutans ASO3-1 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfohalobiaceae;genus:Desulfonatronospira;species:Desulfonatronospira thiodismutans; 0.883243416 0.93520981 0.880482384 0.8835837 0.894206914 0.899380059 0.876241353 0.904548814 0.857997046 0.902090488 0.849548047 0.879044459 0.890622389 0.868330942 0.843018202 0.894996701 0.905112569 0.907510087 118471497 cutinase Mycobacterium smegmatis str. MC2 155 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 0.769538346 0.782106339 0.769630381 0.859450088 89512984 nifh uncultured nitrogen-fixing bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.809982776 0.800960244 118424358 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.919784334 0.985001639 0.922656699 1.020172251 0.979604565 0.938926414 0.954343586 0.887437489 0.960715817 0.955427716 0.936061583 0.927946587 0.862197222 0.802528635 0.848997548 0.904334335 0.95394453 384070900 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.249445307 1.177670372 1.229569838 1.171913008 1.1971183 1.189033966 1.207628345 1.258788191 1.192303766 1.203924055 1.191346918 1.172974006 1.146985464 1.157958454 1.131590629 1.164053529 1.239563727 1.226723295 113526722 catb Ralstonia eutropha H16 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 1.299718975 1.284109406 1.260298599 1.281972579 1.261753975 1.306221584 1.278432385 1.288809735 1.261436396 1.277081621 1.253520603 1.282200263 1.240191028 1.223873914 1.202821249 1.252967288 1.26395154 1.254945554 325980822 metc Nitrosomonas sp. AL212 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas; 0.828217806 0.872352876 0.827350339 0.862877509 0.802021805 0.790214596 0.816360517 0.824771421 0.859066004 0.810954716 0.802732312 0.978868038 0.840541869 260937595 PRI Vibrio orientalis CIP 102891 = ATCC 33934 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio orientalis; 1.204390393 1.184679106 1.218081113 1.237584504 1.223973374 1.196316103 1.209982332 1.222830934 1.229098371 1.210465803 1.21149089 1.25152868 1.200583899 1.19765895 1.21291225 1.226845471 1.193011478 1.1914955 116693468 limeh Burkholderia cenocepacia HI2424 Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cenocepacia; 0.978660702 0.979664911 0.995148243 1.046156554 0.99574178 1.046410645 0.979593435 1.020630533 0.998875685 0.97480608 0.974747669 1.026589077 0.977209239 0.916727145 0.995925464 0.951624242 1.042622718 0.980614601 388527281 alkk Tistrella mobilis KA081020-065 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Tistrella;species:Tistrella mobilis; 1.081339274 1.073619194 1.00836822 1.087884421 0.979141263 1.100960808 1.006051024 1.009944796 1.04322202 0.997166953 1.041244354 1.033927605 1.001922707 1.007578888 1.009307308 1.065249938 1.076300696 1.053246507 383641166 amyA Sphingomonas elodea ATCC 31461 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas elodea; 0.936487731 1.011051608 0.893327062 0.897785256 0.930375859 0.991261954 0.896847607 0.923642574 0.874456829 0.99726194 0.905233771 0.95611616 0.920685606 0.943504076 0.89756191 0.950594939 0.870513992 0.987124116 319743239 fthfs Lautropia mirabilis ATCC 51599 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Lautropia;species:Lautropia mirabilis; 0.896272821 0.879424404 0.90536428 0.935797128 0.902732232 0.936517702 0.952204392 0.949711881 0.933464922 0.905754468 0.861270285 0.87767767 0.864593236 0.83282685 0.802503088 0.827728635 0.895290894 0.907101592 315411436 amyA Micromonospora sp. L5 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Micromonospora; 1.329968558 1.279905788 1.276533673 1.290770225 1.266109286 1.337078432 1.279600764 1.282435979 1.258786919 1.275657693 1.269219194 1.281601583 1.25147774 1.281672632 1.207547704 1.260847076 1.269061845 1.244714976 294671 atza Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia; 1.103635926 1.022514867 0.903549791 0.834244645 0.815675492 0.900345256 0.883917267 0.924237143 0.877012261 0.824572119 0.855359471 0.808048198 0.876445628 0.820828771 0.836387611 0.856839319 197106349 gdh Phenylobacterium zucineum HLK1 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Phenylobacterium;species:Phenylobacterium zucineum; 1.152703176 1.238867673 1.059666542 1.217484744 1.205378161 1.074360592 1.217881287 1.212716512 1.268740559 1.139075255 1.14251552 1.133787752 1.22024674 1.229898862 1.08687484 1.046351206 1.17275863 1.221306955 364577252 cysJ Cardiobacterium valvarum F0432 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Cardiobacteriales;family:Cardiobacteriaceae;genus:Cardiobacterium;species:Cardiobacterium valvarum; 0.999268445 1.052195253 0.96613803 0.982649543 0.92743175 1.000779152 0.924325835 0.961210898 0.976984864 0.998152884 0.948186138 0.956933282 0.904827985 0.943740675 0.916552531 0.945093494 1.003041233 1.008423479 292665428 tktA Candidatus Puniceispirillum marinum IMCC1322 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;genus:Candidatus Puniceispirillum;species:Candidatus Puniceispirillum marinum; 1.069780061 1.056784333 1.067709241 1.067975762 1.021300428 1.080814134 1.022223106 1.030117967 1.05802345 1.099225403 1.019862148 1.082903111 1.031675216 0.982983767 0.986257374 1.025430364 1.087801205 1.054754532 395341367 tpha Pseudomonas sp. Ag1 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.935091532 0.946322721 0.911727812 0.937412224 0.913652193 0.93311797 0.923421031 0.866654402 0.898803233 0.893782242 0.940614352 0.891093632 0.912368956 0.824922431 0.915568947 0.928545282 0.914912065 166711826 atza Xanthomonas oryzae pv. oryzicola BLS256 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas oryzae; 0.874035331 0.915852299 0.92019559 0.933733877 0.952604888 0.920684415 0.869837513 0.860447195 0.828011737 0.892061633 0.852045099 0.88770191 0.914480986 0.924124003 0.860270566 0.903846723 0.938714344 0.936781672 337265044 tktA Mesorhizobium opportunistum WSM2075 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium opportunistum; 0.962180516 0.956231214 0.981629993 1.005607592 0.911088031 0.933106044 0.90796361 0.934158139 0.971249271 0.954546216 0.944659222 0.937390099 0.929570721 0.929820658 0.880500131 0.922748397 0.992938376 0.975036871 326413838 chrr Polymorphum gilvum SL003B-26A1 Metal Homeostasis Chromium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;species:Polymorphum gilvum; 0.983719012 0.988815379 1.011068034 1.016610666 0.975719624 1.033022936 1.003157695 1.019217118 1.031127244 0.990598983 0.972424351 1.007186381 0.960349032 1.012580059 0.956309645 0.95917649 1.010382309 1.050915532 37726855 dsra uncultured prokaryote Sulfur sulfite reduction NA 1.406436627 1.338933833 1.35239658 1.397060315 1.357439569 1.394985417 1.372179748 1.399425745 1.374683025 1.368625492 1.352991023 1.390035874 1.320364625 1.33271071 1.316334494 1.39242085 1.37246135 1.316172719 60615686 xyla Arthrobacter sp. B-5-MG-1 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 0.861900456 0.930283514 0.855760349 0.937227301 0.886968359 0.869698077 0.839006156 0.858617036 0.856895835 0.917626454 0.897939141 0.883428523 0.914827059 0.859940105 0.839072583 0.838049777 0.903524959 0.893543653 214043728 ben_bcla Roseobacter sp. GAI101 virulence NA NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 0.785041168 0.837127426 0.819600641 0.836757031 0.802796085 0.83343634 0.831156634 0.866204302 0.842316481 0.827419115 0.808976696 0.863896768 371580899 amyA Corynebacterium diphtheriae 241 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium diphtheriae; 0.816166112 0.822564264 0.879126853 0.877357858 0.819044956 0.866965585 0.84619436 0.861584431 0.828645982 0.822816395 183976708 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.999823756 0.993520089 0.922677433 1.032954473 0.97469617 0.92403887 1.02853426 0.94924593 0.97510401 0.932169613 0.943850294 0.975210342 0.920289652 0.853102579 0.844259247 0.910118892 0.965025962 0.952950314 260575810 tktA Rhodobacter sp. SW2 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter; 0.845341373 0.811409595 0.902983798 0.823379392 0.819364493 0.87058698 0.830326957 0.822322553 0.83895321 0.824897523 0.85471268 0.846039682 98978094 arsc Sphingopyxis alaskensis RB2256 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingopyxis;species:Sphingopyxis alaskensis; 1.082833986 1.07217939 1.072806827 1.048507184 1.044326154 1.095554491 1.040482243 1.063351881 1.060809498 1.067575189 1.065853768 1.070179043 1.036978504 1.029516049 0.991230036 1.045887517 1.083021132 1.093881672 302674395 Glucose_oxidase_fungi Schizophyllum commune H4-8 Carbon Cycling Carbon degradation glucose superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 0.85421285 0.837875875 0.83291585 0.841120832 0.818162627 0.84559556 0.831237851 0.859102885 0.833441893 0.826029857 0.841460833 0.832645608 0.817983455 0.846811578 0.829773763 6651267 pel_Cdeg Colletotrichum gloeosporioides f. sp. malvae Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Glomerellaceae;genus:Glomerella;species:Glomerella cingulata; 0.88776979 0.869691364 0.917913123 1.122990187 0.952341219 0.869091345 0.967986546 0.937655002 0.88901747 0.837248573 0.97273679 0.963901631 0.872534714 0.831735759 0.810681458 0.908341937 0.905169789 0.860227616 167647574 ara Caulobacter sp. K31 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 1.043639226 1.027693012 1.049638707 1.044954369 1.037881108 1.09137517 1.057247502 1.065246523 1.042785687 1.060032979 1.034916912 1.021035464 1.041870896 1.03948105 1.064721734 1.036032837 1.052175626 1.057744041 261835109 arylest Halothiobacillus neapolitanus c2 Organic Remediation Aromatics Other aromatics 0.761807433 0.801219668 0.832590239 0.896109268 0.813849476 89321731 nhh Mycobacterium flavescens PYR-GCK Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 1.008494478 1.013335832 0.976934284 1.040555288 1.013293288 1.0338085 0.89446703 1.027710614 0.956503234 1.021861685 0.954998707 0.979796107 0.909856194 0.967361246 0.875430981 0.948628735 0.994498312 1.051964481 254821327 amyA Mycobacterium intracellulare ATCC 13950 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium intracellulare; 0.891637609 0.872619592 0.886926127 0.920723924 0.872888152 1.058745955 0.858786503 0.871792982 0.877521757 0.859557647 0.874581152 0.865812028 0.858295662 0.875413032 0.839604491 0.863411781 0.87810637 0.865357844 121531638 xylanase Aspergillus versicolor Carbon Cycling Carbon degradation Hemicellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 0.998182869 0.989066912 0.933976444 0.997409966 0.967195064 0.992886258 0.959913229 0.980571587 0.980268357 0.959592677 0.919906259 0.960793964 0.934175901 0.915736454 0.930915622 0.95237807 0.986449582 0.986042328 261337471 inulinase Bifidobacterium gallicum DSM 20093 Carbon Cycling Carbon degradation Inulin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium gallicum; 0.922689562 0.9117181 0.946568752 0.914457522 0.87073967 0.902832875 0.846890415 0.880130038 0.925054761 0.858471887 0.880423548 0.847355794 0.842354132 0.868963512 0.819761335 0.858898184 0.910422688 0.956936204 177843294 RgaE Opitutus terrae PB90-1 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 1.318057923 1.266484907 1.257751594 1.298367159 1.239600137 1.287110924 1.232767951 1.27227951 1.289657067 1.256727509 1.256941063 1.292682007 1.231016253 1.23179237 1.243126251 1.245756017 1.301679849 1.271201175 374081692 amyA uncultured archaeon Carbon Cycling Carbon degradation Starch superkingdom:Archaea; 0.900254846 0.935191645 0.896670779 0.867865697 0.923040047 0.900775067 0.910492332 0.931093315 0.899371073 0.913988154 0.867166217 0.916060639 0.844520321 0.847170217 0.863045218 0.845768286 0.894561329 0.886940809 373459588 acetylglucosaminidase Caldithrix abyssi DSM 13497 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;genus:Caldithrix;species:Caldithrix abyssi; 0.85922656 0.939387101 0.847572269 0.902379913 0.894990837 0.860380015 0.864574965 0.821113856 0.860284603 0.860320163 0.842285544 0.857356298 0.868780149 0.826566305 0.865139026 0.910741278 0.885127829 52699674 rubisco Azospirillum lipoferum Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum; 0.779037992 0.828541816 0.838620624 0.852702001 0.802259077 0.881199922 0.859486495 0.798428584 0.807915655 0.836802754 0.791647481 0.861655412 388275550 catb Pseudomonas sp. M47T1 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 1.136296218 1.088727829 1.039487546 1.080888309 1.022855 1.023488385 1.045964509 1.132088067 1.084350803 1.017594154 1.12430623 1.074984296 1.032023768 1.018461482 0.941088587 0.999624241 1.09265462 1.040398185 83025984 alkb uncultured bacterium Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria; 0.859817958 0.852511848 0.8970462 0.890425451 0.818109528 0.864750732 0.829301597 0.861828675 0.856794426 0.949111692 0.892807444 0.856073668 0.824972707 0.866371691 0.886343162 379044854 ppx Frateuria aurantia DSM 6220 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Frateuria;species:Frateuria aurantia; 0.824520411 0.831309146 0.805261361 0.799926073 0.847595973 0.81780275 0.802911861 225794504 chitinase Acidobacterium capsulatum ATCC 51196 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Acidobacterium;species:Acidobacterium capsulatum; 0.783371949 0.804135537 37726814 dsrB uncultured prokaryote Sulfur sulfite reduction NA 1.031925801 0.959922496 0.963831041 1.03718867 1.004661238 0.946015204 1.025765297 1.036683361 1.004361807 0.988582996 0.998957308 1.036577727 1.006951505 0.950415249 0.953735252 0.978343948 1.02404887 0.980578397 14389219 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.129193223 0.907100063 0.87144475 0.910348965 0.893928452 0.814422637 0.821694714 0.888162695 0.876362603 0.84017677 0.850605676 1.027683119 0.814780681 0.819413854 0.824735503 0.846928796 0.87995694 257458260 amyA Treponema vincentii ATCC 35580 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetes;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema vincentii; 0.866080171 0.914361712 0.886282196 0.904050666 0.868975921 0.846864893 0.905503378 0.89223949 0.899282031 0.860096557 0.857698163 0.897065554 0.823565807 0.797345241 0.890054807 0.816677821 0.878493706 0.866118529 169156487 amyA Clavibacter michiganensis subsp. sepedonicus Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Clavibacter;species:Clavibacter michiganensis; 1.224986022 1.194260153 1.212091254 1.198866848 1.186518964 1.236014774 1.187107225 1.184415575 1.197208112 1.209987641 1.202835479 1.206141496 1.167947153 1.173192916 1.133355467 1.1959434 1.199655108 1.207118174 251844850 arsm Paenibacillus sp. oral taxon 786 str. D14 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus sp. oral taxon 786; 0.87191456 0.962540479 0.893950661 0.929248257 0.910233027 0.938989061 0.886034265 0.908957623 0.910635923 0.951415173 0.874181026 0.907012235 0.926798451 0.905142587 0.954193114 0.918820084 0.939001954 0.922083817 337760420 aln Hyphomicrobium sp. MC1 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium; 0.874546317 0.897602754 0.891520781 0.923418421 0.882538537 0.849854809 0.84424426 0.912392047 0.898404901 0.868693126 0.934094271 0.923417612 0.84804041 0.837300621 0.86710505 0.908092416 0.853567114 55824414 xylanase Gibberella zeae Carbon Cycling Carbon degradation Hemicellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Fusarium; 0.964628108 0.967982648 0.923397939 0.992078536 0.950835346 0.985609266 0.92571713 0.983724891 1.013910282 0.940685677 0.919778859 0.929147636 0.922263095 0.906607411 0.923308458 0.882162499 0.992466822 0.966765046 157285630 napa uncultured bacterium Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria; 0.792185324 0.806612913 0.860207777 0.806170702 0.803382399 0.788738572 0.80894268 377537448 amyA Mobilicoccus pelagius NBRC 104925 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dermatophilaceae;genus:Mobilicoccus;species:Mobilicoccus pelagius; 0.86134088 0.916071742 0.863379283 0.864870539 0.896447802 0.870650764 0.834667068 0.842517408 0.81026385 0.875387292 0.879009584 0.868419388 0.825449548 0.865146396 0.842205066 29466012 norb uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.924561073 0.912364933 0.976946239 0.945670125 0.969502494 0.926803973 0.933610763 0.885528226 0.950283375 0.858573846 0.839323879 0.91475264 0.873064068 0.850179835 0.826573073 0.896378236 0.940626482 0.942582596 45421890 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.838334574 0.933906102 0.975253384 0.932900553 1.002191067 0.959660932 0.864255019 0.816808261 0.837493667 0.916230165 0.868017986 0.880128011 0.877161426 0.884650811 0.844331488 0.931129118 0.901874403 0.927685512 296393796 amyA Segniliparus rotundus DSM 44985 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Segniliparaceae;genus:Segniliparus;species:Segniliparus rotundus; 1.02747566 0.943366015 0.984776818 0.944115177 0.972238113 0.958998473 0.921881287 0.990555543 0.955881716 0.955472032 0.940982105 0.956612859 0.94892655 0.850803311 0.896039538 1.031263273 0.973412993 339504340 amie Roseobacter litoralis Och 149 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter litoralis; 0.848066043 0.885261212 0.900725862 0.796796262 0.869368814 0.856301147 0.861713797 0.827506179 0.870436981 0.910500912 0.86955804 0.876683972 0.806836531 0.84658392 0.829231628 0.864258532 0.859386713 0.90150291 21646982 SoxB Chlorobium tepidum TLS Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobaculum;species:Chlorobaculum tepidum; 1.020087581 0.979332247 0.944002352 1.011478106 0.921325215 0.955305572 0.957238872 0.963438054 0.961616761 0.919953885 0.948857137 0.95339273 0.928086778 0.927490499 0.922285461 0.95198546 0.998407529 0.960769813 306516937 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.981439024 0.948913991 0.905337109 1.018927228 0.948903331 0.95301633 0.9300809 0.960135851 0.968970344 0.929190559 1.054614127 0.954865229 0.940250548 0.914445998 0.863694955 0.925023804 0.988989314 0.98918635 151280650 GAPDH_Calvin Janthinobacterium sp. Marseille Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Janthinobacterium; 0.873823106 0.841464759 0.824721269 0.817066307 88863773 TIM Jannaschia sp. CCS1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Jannaschia; 1.01872209 1.00077696 0.992828991 1.054211797 0.984954937 1.003918215 0.982721568 0.992128435 1.00628457 1.003722635 1.026577494 1.024537295 0.968856766 0.968536683 0.957213297 0.986730501 1.037273706 1.005110475 68342698 alginase Pseudomonas fluorescens Pf-5 Carbon Cycling Carbon degradation Alginate superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas protegens; 1.225725061 1.219013637 1.207938686 1.252435554 1.202470552 1.231432768 1.188014066 1.196277685 1.198540733 1.190801213 1.210801259 1.213707539 1.199062993 1.168887966 1.169572666 1.188816666 1.260479225 1.193655646 338533521 cysJ Myxococcus fulvus HW-1 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus fulvus; 1.084163618 1.065819 1.053134924 1.023084396 1.037077233 1.054643667 0.964345486 1.005289405 1.035898884 1.073892456 1.067008226 1.044525766 1.040951183 1.081730727 0.97380126 0.992873378 1.048370503 1.077148851 115390945 cmci Aspergillus terreus NIH2624 Organic Remediation Aromatics Other aromatics superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 1.166215401 1.107277621 1.420688656 1.166137652 1.193870863 1.049181864 1.066693863 1.108933515 1.273340399 1.115879709 1.145578961 1.224263633 1.063156706 1.07262633 1.100995875 1.186099904 1.141791026 1.165978422 26278842 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.087090334 1.102329031 1.066909222 1.065213955 1.065895976 1.08926761 1.044028192 1.059278281 1.071645886 1.067310134 1.061926215 1.072036997 1.051565391 1.055580924 1.041823738 1.074923367 1.08541524 1.075673747 220718746 aln Variovorax paradoxus S110 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 1.187364148 1.183776519 1.176716706 1.152383895 1.14647025 1.184880928 1.126696683 1.156206965 1.152774535 1.151016375 1.162340912 1.173160007 1.122797119 1.162970616 1.120785578 1.148570576 1.173425332 1.170102016 398796422 nfsb_2 Pantoea sp. YR343 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 0.879068166 0.810793755 0.82422599 0.814610327 0.874560759 0.812324802 0.843885793 0.837042054 0.870320067 0.858189159 0.846008779 0.869710764 312961238 cysJ Pseudomonas fluorescens WH6 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 0.847121326 0.947622992 0.957020931 0.828145942 0.790262745 0.853372837 0.83944838 0.836080747 0.843290565 0.866292217 0.827647327 0.844299668 383651576 mhpa Streptomyces chartreusis NRRL 12338 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces chartreusis; 1.038607153 1.039689667 1.010831703 1.020793634 1.007239827 1.044009517 0.986669166 0.989877037 1.023398277 1.016348796 1.002445117 0.988245052 0.979183938 1.006396424 0.989730621 0.994214617 1.034164636 1.029691655 118171653 pcag Mycobacterium smegmatis str. MC2 155 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 0.99224813 0.934192329 1.006177645 1.018554446 0.991331009 1.045146559 1.020121038 1.050055613 1.018655883 1.007594624 0.962735858 1.058498805 0.968402032 1.01186683 0.985219735 1.01730481 1.044524038 0.953262679 296023298 mer Cellulomonas flavigena DSM 20109 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas;species:Cellulomonas flavigena; 0.845388246 0.853687562 0.849117725 0.829518262 0.837002822 0.792229345 0.866510667 0.841059324 10184710 vdh Pseudomonas sp. HR199 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 1.208620327 1.132281594 1.165769578 1.156245566 1.120039425 1.13783478 1.140594581 1.148059261 1.165981143 1.118487337 1.144203699 1.172314606 1.106689076 1.104990199 1.089100472 1.141125882 1.149875362 1.141172686 307218394 ppk Halomonas elongata DSM 2581 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas;species:Halomonas elongata; 0.863107293 0.82592739 0.889252612 0.876120064 0.851322669 0.819084197 0.944440197 0.876021648 0.832275699 0.819411374 0.852034844 329309848 arsc Alicycliphilus denitrificans K601 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Alicycliphilus;species:Alicycliphilus denitrificans; 0.782033431 0.793672776 0.845747375 0.762156345 0.834805939 353199507 pula Paenibacillus lactis 154 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus lactis; 1.046619875 1.002275358 1.032294437 1.059782162 1.025040211 1.045079121 1.031009831 1.045290492 1.049513518 0.946079852 0.96755305 1.004019558 0.982791716 0.96134047 0.966350339 0.974149644 1.053826242 1.045833325 302490176 mer Desulfovibrio fructosovorans JJ Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio fructosovorans; 1.212604407 1.181871273 1.184151727 1.215922034 1.162865715 1.186240952 1.161498657 1.205826584 1.182698868 1.158149489 1.162483228 1.195939682 1.163987935 1.156732129 1.156734543 1.183292507 1.193127698 1.15389961 349784764 fosx Thermobacillus composti KWC4 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Thermobacillus;species:Thermobacillus composti; 1.144955369 1.181093567 1.145130331 1.160546836 1.148383319 1.150713611 1.169375827 1.147128854 1.11679926 1.124800904 1.14622192 1.142785575 1.12821694 1.102803476 1.127400964 1.140052721 1.211874673 1.126112894 300390374 fthfs uncultured bacterium Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria; 0.79681443 0.811394473 0.841601537 0.798895809 338757689 cellobiase Roseobacter litoralis Och 149 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter litoralis; 1.15688528 1.131086423 1.105890026 1.118931876 1.112280684 1.120787125 1.119096466 1.122553234 1.12091677 1.109814226 1.111302146 1.114304435 1.074026786 1.127209446 1.118611626 1.130316956 144901256 cellobiase Magnetospirillum gryphiswaldense MSR-1 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum gryphiswaldense; 1.336417498 1.331926079 1.331396177 1.307025327 1.339835102 1.377540049 1.329454768 1.333610632 1.302178322 1.320640962 1.340718527 1.311325049 1.303703967 1.294712262 1.280584986 1.306156951 1.340720735 1.330861042 240144094 xylanase Roseburia intestinalis L1-82 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Roseburia;species:Roseburia intestinalis; 1.075915162 1.053409035 1.025903294 1.053509939 1.005932433 1.01470773 1.019299671 1.069682008 1.101462442 1.024012106 1.002002487 1.050898484 1.011277656 0.999651897 0.96159371 0.983699285 1.031727662 1.047211271 159181884 TIM alpha proteobacterium BAL199 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 1.16397453 1.141976419 1.135908416 1.125299817 1.097872485 1.124124762 1.054299929 1.101941034 1.105496663 1.127948062 1.129024366 1.137498813 1.11534406 1.128196263 1.088059121 1.105205809 1.130224496 1.12943309 302679284 endochitinase Schizophyllum commune H4-8 Carbon Cycling Carbon degradation Chitin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 0.88931474 0.998588681 0.873118465 0.912653902 0.90041298 0.968704245 0.895698684 0.851398689 0.919617378 0.974739913 0.84693046 0.925370118 0.90127302 0.877965711 0.857217655 0.868619797 0.921936476 0.963541013 21223889 hyaluronidase Streptomyces coelicolor A3(2) Carbon Cycling Carbon degradation hyaluronic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 1.284850244 1.282850013 1.264837098 1.265852832 1.25470507 1.290850197 1.212776359 1.195651587 1.182807979 1.23595176 1.220334664 1.232459576 1.223206825 1.197498191 1.241426521 1.215940252 1.25172341 1.260852415 307545382 ara Halomonas elongata DSM 2581 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas;species:Halomonas elongata; 1.165730533 1.07348753 1.012821155 1.110669371 1.026690975 1.067447339 1.1172584 1.133727483 1.108806331 1.074846387 1.044672805 1.082426468 1.02567097 1.063727631 1.046838608 1.039413673 1.08347478 1.044616079 27352080 catechol_b Bradyrhizobium japonicum USDA 110 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 1.19376887 1.1777731 1.12252267 1.155527863 1.164190694 1.170096055 1.123316147 1.110675575 1.10975559 1.160181048 1.118501495 1.154316882 1.127593274 1.142488272 1.13772944 1.150310514 1.168285659 1.162235482 84500768 xyla Oceanicola batsensis HTCC2597 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola batsensis; 0.956407229 0.968220952 0.96021 0.994802908 0.989511978 0.973152494 0.983176112 0.961205025 0.945023489 0.974914843 0.944203483 0.933217005 0.949772498 0.90822288 0.841425987 0.909789979 0.94532774 0.980006128 33243249 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.82257401 0.839585793 0.89904612 0.78486438 225163681 RgaE Opitutaceae bacterium TAV2 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Diplosphaera;species:Diplosphaera colitermitum; 1.149706171 1.08690972 1.109246772 1.153297803 1.083668542 1.144865723 1.108204033 1.123859225 1.131869607 1.104458438 1.121191455 1.10001743 1.089491791 1.100286844 1.032639395 1.103095336 1.135555634 1.114687981 310815309 PRI Ketogulonicigenium vulgare Y25 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ketogulonicigenium;species:Ketogulonicigenium vulgare; 0.928442981 0.937919922 0.891635312 0.914335533 0.859772143 0.879157358 0.823066036 0.871968686 0.909132051 0.91116176 0.858030989 0.938842639 0.816365699 0.896459144 0.845476928 0.904110436 0.930433098 21038968 tfda alpha proteobacterium HW13 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 0.95832956 0.898352219 0.894682707 0.918790729 0.920070618 0.92979804 0.947908486 0.929060538 0.901568534 0.867941513 0.847689369 0.915076511 0.844627835 0.821991304 0.797111776 0.857209403 0.888674024 0.919292708 164598138 exoglucanase Xylaria polymorpha Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Xylariales;family:Xylariaceae;genus:Xylaria; 0.820791507 0.81975971 0.794757308 0.791660665 0.810509744 0.812024827 0.803135552 0.751157397 0.830417379 29466004 norb uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.899055559 0.838895463 0.879219419 0.834357515 0.808010002 0.839577584 0.815618014 0.791277694 0.871946632 0.85298773 338975525 pcag Bradyrhizobiaceae bacterium SG-6C Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae; 0.923491133 0.926913527 0.916106656 0.861241883 0.926937721 0.917975084 0.8991365 0.912006253 0.87176092 0.893276329 0.938603215 0.861841254 0.883890405 0.850089893 0.860218213 0.877487385 0.912150739 373892033 ara Mucilaginibacter paludis DSM 18603 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Mucilaginibacter;species:Mucilaginibacter paludis; 0.812404336 0.818745421 0.785164618 0.813332741 0.807376289 0.827988137 0.827340265 0.839876018 0.800269004 0.865682234 0.832746611 86555494 PRI Synechococcus sp. JA-3-3Ab Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 1.438881561 1.391682609 1.388618388 1.398527715 1.388301484 1.430723762 1.382052711 1.404918067 1.411525718 1.381054365 1.381079787 1.420918764 1.351448526 1.336487391 1.371652401 1.379313632 1.412489746 1.371611557 209401600 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.481691749 1.433281455 1.449726495 1.45012952 1.420027014 1.455871916 1.391709312 1.433189099 1.435625272 1.421331931 1.418330353 1.445984537 1.401679425 1.402170844 1.405770982 1.403185637 1.438941518 1.431321492 210632294 cellobiase Collinsella stercoris DSM 13279 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Collinsella;species:Collinsella stercoris; 0.905069808 0.912530703 0.90154006 0.961703243 0.896964324 0.843134983 0.935129523 0.891512776 0.953226971 0.920780292 0.945064679 0.928947842 0.885480623 0.916232818 0.912830205 0.884633689 0.931666369 0.900827778 209874150 nirb Oligotropha carboxidovorans OM5 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Oligotropha;species:Oligotropha carboxidovorans; 1.246710182 1.284576802 1.255763314 1.252980707 1.264008591 1.268284984 1.200957511 1.237003748 1.226523115 1.220745585 1.253229329 1.253238546 1.206915075 1.208339095 1.185641792 1.205079688 1.23185713 1.246608491 62084130 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.452676759 1.378851118 1.367168023 1.371112162 1.374937882 1.43861297 1.339538927 1.403371378 1.389792758 1.342171551 1.3621551 1.348990104 1.32978015 1.331482895 1.321134528 1.366543614 1.401297379 1.391817862 55773483 aoxb Thermus thermophilus HB8 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus;species:Thermus thermophilus; 0.817986631 0.869657022 0.812166284 0.802716944 0.810817595 0.793723177 0.806330046 0.85703586 187975928 ara Pyrenophora tritici-repentis Pt-1C-BFP Carbon Cycling Carbon degradation Hemicellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 1.014120575 0.891060412 0.930943584 0.979896397 0.935155284 0.942080786 0.925690758 0.974268864 0.960012067 0.917454118 0.930279099 0.969763965 0.900736848 0.880858379 0.93685638 0.903133264 0.948689395 0.91500447 339888215 norb Neisseria macacae ATCC 33926 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria macacae; 0.835660402 0.838804179 0.802949302 0.821315291 0.807588248 0.80530773 0.774962962 0.822561826 312878772 CsoS1_CcmK Aminomonas paucivorans DSM 12260 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Synergistetes;class:Synergistia;order:Synergistales;family:Synergistaceae;genus:Aminomonas;species:Aminomonas paucivorans; 1.21719807 1.210726674 1.20984279 1.243649969 1.235762278 1.289134187 1.234581973 1.268643519 1.198592784 1.203889917 1.204211739 1.247791662 1.200978249 1.176201225 1.222404186 1.213812426 1.179499841 1.175004281 120401613 bphF1 Mycobacterium vanbaalenii PYR-1 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 0.866523671 0.878086201 0.827936397 0.884208157 0.856167174 0.830454943 0.838893214 0.833114495 0.858967553 0.834852687 0.867210977 0.835029002 118424499 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.019080051 0.985783393 0.978934715 1.022717324 0.936030467 1.029801299 0.963956727 0.986111779 1.003452528 1.000935768 0.975043214 0.988471794 0.974582122 0.964704005 0.940808455 1.010017651 1.034748874 0.992315747 169786393 pec_Cdeg Aspergillus oryzae RIB40 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus oryzae; 1.091422522 1.106061747 1.070489417 1.084934006 1.069698142 1.071159633 1.066411382 1.073720483 1.077019736 1.049944042 1.061297169 1.088067782 1.039063611 1.040595242 1.000167933 1.065854031 1.077868861 1.096451016 363615483 CsoS1_CcmK Synergistes sp. 3_1_syn1 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Synergistetes;class:Synergistia;order:Synergistales;family:Synergistaceae;genus:Synergistes; 0.928013618 0.902446561 0.90733061 0.935555992 0.936584081 0.915431593 0.93535847 0.883914972 0.903227034 0.929457235 0.901626925 0.939555776 0.883478421 0.842889694 0.859395343 0.909329904 0.907150099 0.855423553 110283124 arsc Mesorhizobium sp. BNC1 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 1.062451365 0.916040941 1.017832275 1.006918808 1.127567234 1.055928646 1.081078906 0.870845092 1.054245205 1.028151651 1.025374773 1.042350742 1.082689359 1.155350679 1.053968351 0.987808993 1.02417802 332667792 cysI Haliscomenobacter hydrossis DSM 1100 Sulfur Other NA superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Saprospiraceae;genus:Haliscomenobacter;species:Haliscomenobacter hydrossis; 1.102789169 1.070088496 1.092384312 1.140692863 1.049914567 1.052799907 1.029308697 1.062172302 1.106269207 1.085203902 1.061329866 1.080825099 1.052306826 1.009067953 1.004399186 1.012427394 1.088581257 1.055689736 357079216 tfda Frankia sp. CN3 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 1.231585533 1.213248209 1.22413094 1.23573488 1.208238305 1.194050733 1.20163035 1.232320777 1.214194568 1.184860659 1.215773194 1.224271379 1.186578493 1.137535077 1.137462675 1.166484793 1.221456336 1.162921528 433606 norb Pseudomonas stutzeri Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.849821083 0.961778929 0.843661952 0.870879908 0.913682788 0.859293756 0.849173016 0.873833039 0.91358217 0.858522867 0.885061809 0.830248352 0.855230407 0.893799312 0.872148063 0.879184982 218462581 TIM Rhizobium etli Kim 5 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 1.006547166 1.003173866 1.004661115 1.05827379 1.001501294 1.014876808 1.011317671 1.029683423 1.022677072 0.970304138 0.971138945 0.997489194 1.001392521 0.984948551 1.008298467 0.952135269 1.011971651 1.004482939 145223801 merb Mycobacterium gilvum PYR-GCK Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 0.971878077 0.865413605 0.881204163 0.924230173 0.933853227 0.941749838 0.911019147 0.904450522 0.892897536 0.917077974 0.90643557 0.859896912 0.901252281 0.820173332 0.822859457 0.935271559 0.844693771 0.884059181 344035769 amyA Streptomyces violaceusniger Tu 4113 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces violaceusniger; 1.300911656 1.290996877 1.265018597 1.274726028 1.259066524 1.283776144 1.25044363 1.244265847 1.255018124 1.263132544 1.276017914 1.259222558 1.235139001 1.227127362 1.237248065 1.23466374 1.285820962 1.271237406 83404778 nirs uncultured organism Nitrogen Denitrification NA 0.8680118 0.837923342 0.832518707 0.858820888 0.840003575 0.838546666 0.883692083 0.852485338 0.848289466 0.831238806 0.857132858 0.830084474 0.955312062 0.847736521 0.846228739 0.882390533 0.805921957 374991446 limeh Streptomyces bingchenggensis BCW-1 Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces bingchenggensis; 0.785427301 0.84052939 0.831374708 0.799340364 0.864224142 0.850769453 0.783873047 0.857970783 18160861 PEP_synthase Pyrobaculum aerophilum str. IM2 Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum aerophilum; 0.900854169 0.891994482 0.841591485 0.900315737 0.861462604 0.822463801 0.819739681 0.900446289 0.893198312 0.850622969 0.8581498 0.815274162 0.891556409 0.898530683 83573557 amyA Moorella thermoacetica ATCC 39073 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Moorella;species:Moorella thermoacetica; 0.976331309 0.974472185 0.979941977 0.985771679 0.883138098 0.947925579 0.91190388 0.984760587 0.955022059 0.947796296 0.949033227 0.967298991 0.921291563 0.913373421 0.899861048 0.893658837 0.984337782 0.949239678 84494866 nicdehydr Janibacter sp. HTCC2649 Organic Remediation Aromatics Heterocyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Janibacter; 1.053913041 1.261773741 1.046534141 1.033178949 1.071381614 1.076730356 1.039545895 1.034601964 0.995576987 1.081208677 1.035929727 1.023564505 1.051401308 1.111563984 0.990464713 1.010648181 0.993834103 1.078293269 7239153 tktA Xanthobacter flavus Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter; 1.022546804 1.015125635 0.991747488 0.990046356 0.946231267 0.983307489 0.949244147 1.011371259 0.984704992 0.992074265 1.00535859 1.021380695 0.974290531 0.954312763 0.930524239 0.990811881 0.990850734 1.021279807 299064390 amyA Erwinia billingiae Eb661 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia billingiae; 0.919521781 0.955064698 0.836334233 0.911195988 0.85506598 0.974486135 0.868040823 0.889680651 0.911400625 0.846067143 0.85003593 0.887075224 0.89061896 0.827744249 0.870783171 0.874670118 0.897736636 311886900 cutinase Rhodococcus equi 103S Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus equi; 1.190935784 1.137708863 1.181108918 1.220137259 1.173403902 1.183504417 1.15508254 1.195174132 1.213877899 1.156253936 1.187928657 1.201710108 1.143055667 1.166174754 1.217683563 1.142285157 1.190419962 1.125952456 59800364 phenol_oxidase Lentinus tigrinus Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Lentinaceae;genus:Lentinus; 1.007744281 0.981754914 0.989952475 1.049307117 0.925659287 0.990956318 0.989834775 1.040582413 1.001969679 0.98188331 0.971088612 0.997165791 0.993476172 0.976592388 0.950691992 1.005408719 1.012962478 0.983729093 86742880 mhpa Frankia sp. CcI3 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 1.057471933 1.113568421 1.024585103 1.081207962 1.086357557 1.090052617 1.040853911 1.000946948 1.062131077 1.09265891 1.022160074 1.036300517 1.022709094 1.004907583 1.022477131 0.989720963 1.059569789 1.105615208 295794765 FBP_aldolase Thiomonas intermedia K12 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Thiomonas;species:Thiomonas intermedia; 0.986382377 0.959175032 0.887297637 0.942574118 0.913640075 0.955844095 0.872491405 0.88796042 0.919074988 0.903536657 0.919051016 0.886586261 0.867169561 0.903086066 0.852007056 0.890057609 0.957885088 0.950783242 282896437 CsoS1_CcmK Raphidiopsis brookii D9 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Raphidiopsis;species:Raphidiopsis brookii; 0.817461686 0.834572766 0.752663773 0.808280531 1914799 cellobiase Thermococcus sp. Carbon Cycling Carbon degradation Cellulose superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Thermococcus; 1.057554704 1.053437934 1.059175922 1.077427409 1.038994604 1.068799769 1.035943544 1.052444309 1.07058081 1.060717475 1.061218964 1.045772507 1.008250568 1.05270412 1.070711798 0.997957976 1.043922303 1.054702433 152028228 terc Anaeromyxobacter sp. Fw109-5 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter; 0.848874806 0.838501341 0.860168143 0.888694687 0.886711158 0.826288745 0.882913173 0.911619605 0.833592755 0.848436897 0.80998717 0.784461682 0.862912599 0.805141541 0.870679261 0.898962899 111020236 cpnb Rhodococcus sp. RHA1 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 0.808979949 0.814838801 0.85756608 0.838723549 0.80431709 0.83313741 0.877969853 0.845354998 0.814159475 0.823320233 0.802611358 0.864290107 357969814 aoxb Halomonas boliviensis LC1 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas;species:Halomonas boliviensis; 1.327493695 1.336195241 1.28931064 1.292686454 1.254481471 1.32815978 1.270965091 1.289239448 1.284850333 1.297308291 1.264156684 1.280232043 1.234493247 1.241390963 1.196489225 1.256811293 1.300523939 1.31479736 398087861 ben_bcla Variovorax sp. CF313 virulence NA NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax; 1.123971088 1.125903856 1.118489109 1.120640127 1.07227011 1.147078872 1.094834738 1.123624214 1.110107564 1.138090031 1.070502262 1.10680987 1.088569115 1.107236183 1.084326136 1.101836634 1.137560524 1.162098994 393762378 amyA Alishewanella agri BL06 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alishewanella;species:Alishewanella agri; 0.860280186 0.857639995 0.870023602 0.917718939 0.874326818 0.839298199 0.882493843 0.870941923 0.855701523 0.816305318 0.828752921 0.882301456 0.81993455 0.799957135 295699743 quinoline Burkholderia sp. CCGE1002 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 0.793977945 0.806482536 206676408 xlnd Rhodobacterales bacterium HTCC2083 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 1.371163086 1.344200583 1.315870797 1.341710865 1.313008452 1.352534768 1.319217713 1.353938993 1.325409723 1.331144697 1.315920039 1.33643066 1.28174702 1.307912552 1.272966392 1.313815674 1.312983276 1.334056273 326198195 ppx Gordonia neofelifaecis NRRL B-59395 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia neofelifaecis; 1.154709431 1.113220758 1.096420594 1.123679102 1.084326803 1.127566641 1.091409822 1.085778216 1.134450953 1.108108381 1.09730033 1.108091447 1.082490561 1.101889191 1.057487695 1.099450186 1.135926463 1.109611769 320127784 mer Geobacter sp. M18 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 0.815537712 0.835417824 0.811685127 0.830749028 0.834357206 0.842859938 0.810394795 145215417 amyA Mycobacterium gilvum PYR-GCK Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 0.96598428 1.075213644 0.998883276 0.990503538 1.052440567 0.97061178 1.028856593 0.998865031 1.028728653 0.959664736 1.008555294 0.928899992 0.958601793 0.954291736 1.020840358 0.971935903 1.045553857 118169201 dehh Mycobacterium smegmatis str. MC2 155 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 0.884257944 0.872242364 0.884149689 0.879050574 0.857324346 0.829586227 0.890325077 0.872761755 0.869815318 0.885421884 0.824019015 0.845963391 0.82397287 0.801083168 0.900748751 0.884721005 0.874888656 160932642 amyA Clostridium leptum DSM 753 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium leptum; 0.956347382 1.037909576 1.012511574 1.007785483 1.004934344 1.036544625 0.99472281 0.952119431 0.991896185 1.016952196 0.994677685 1.000201641 1.00304028 0.992028041 0.950821379 0.999458766 1.009237161 1.017231196 218173571 amyA Cyanothece sp. PCC 7424 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 0.772910742 0.859271125 0.876957605 0.839749621 125629425 ppk Pyropia yezoensis Phosphorus Polyphosphate synthesis NA superkingdom:Eukaryota;class:Bangiophyceae;order:Bangiales;family:Bangiaceae;genus:Pyropia; 1.154321656 1.120981473 1.113448166 1.16981574 1.100763575 1.123281008 1.12239756 1.136839523 1.130481825 1.085221061 1.109577536 1.135607866 1.087392029 1.062189129 1.09202074 1.050657162 1.146403006 1.0494216 359761676 nirs Pseudomonas fluorescens F113 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 1.168347862 1.104082423 1.13537058 1.138918866 1.106324273 1.182319343 1.049230655 1.096201366 1.122042737 1.113487603 1.116633899 1.092006144 1.107474989 1.124372848 1.114653563 1.109428116 1.177490076 1.105158599 327544890 tktA Oxalobacteraceae bacterium IMCC9480 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae; 1.164516581 1.133854787 1.118175931 1.13055705 1.125314701 1.117069753 1.126224193 1.112671969 1.107584448 1.105053696 1.112714211 1.128050621 1.094003148 1.074577744 1.145151468 1.096517141 1.135567998 1.104686485 119392302 protease_serine_fungi Monacrosporium coelobrochum Carbon Cycling Carbon degradation protein superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Orbiliomycetes;order:Orbiliales;family:Orbiliaceae;genus:Monacrosporium; 0.792784758 0.819750803 0.810573907 0.789935529 78057476 amoa uncultured Nitrosospira sp. Nitrogen Nitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosospira; 1.055634742 1.047582581 1.0621473 1.079828546 1.052518179 1.043469512 1.067967652 1.067975235 1.062709246 1.035565364 1.026974514 1.073165091 1.010992159 1.001220948 1.012096749 1.040560498 1.016258331 1.019331509 6434744 xylanase Streptomyces coelicolor A3(2) Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 1.123972442 1.072775681 1.09254484 1.067482912 1.080166687 1.123080746 1.118966633 1.113553712 1.098224331 1.099763915 1.092005499 1.060042492 1.051585202 1.070723662 1.040486325 1.048348428 1.076943699 1.089483455 311108240 phn Achromobacter xylosoxidans A8 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter;species:Achromobacter xylosoxidans; 0.997582657 0.891151431 0.960337293 0.909134949 0.905759242 0.834238798 0.903260231 0.943501487 0.907438807 0.916315849 0.892485353 0.841306769 0.974793298 0.926168054 51469810 nitrilase Alcaligenes faecalis Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Alcaligenes; 0.977737659 0.973885015 0.950666106 0.936639279 0.90100498 0.87692865 0.921871177 0.904315016 0.967530603 0.969632479 0.916644966 0.930026241 0.907053333 0.868493522 0.904124094 0.862700319 0.943931137 0.965256225 383781311 amyA Actinoplanes missouriensis 431 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes;species:Actinoplanes missouriensis; 1.601746708 1.583939343 1.574398082 1.553916853 1.546168768 1.589434673 1.534318568 1.555753235 1.541010874 1.557803434 1.55395363 1.552994043 1.528729406 1.532379455 1.543043911 1.547389111 1.558032136 1.551528834 374429131 nosz uncultured ammonia-oxidizing archaeon Nitrogen Denitrification NA superkingdom:Archaea; 0.853560953 0.873572785 0.897940909 0.849045059 0.84680722 0.856210362 0.846912431 0.817736599 0.80158023 0.844553963 0.851512259 15076650 merb Bacillus cereus Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 0.875766067 0.851804934 0.872465853 0.934773451 0.927947577 0.868165657 0.906177032 0.942721883 0.894762045 0.893086925 0.90600581 0.909529512 0.86311197 0.862276275 0.894716572 0.844394005 0.858417737 0.88701443 69279982 arsc Mesorhizobium sp. BNC1 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 0.800774018 0.8279778 0.866115452 0.8243037 0.837051968 0.815770951 0.781014245 0.866542394 0.865845473 0.825610009 0.830059734 0.837280387 0.804477685 0.837318743 177843310 xylanase Opitutus terrae PB90-1 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 1.01490556 0.923829675 1.014587527 1.040145814 1.012474045 1.021449123 1.030823898 1.058762493 0.941114435 0.970096829 0.997515845 1.006744551 0.955919937 0.906612148 0.933578842 0.940650182 1.021713761 0.999512749 75993827 arra uncultured bacterium Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 0.879881935 0.871455034 0.859167722 0.863644156 0.887200845 0.859753423 0.819887901 0.81280202 0.850539685 0.87276353 0.812895013 0.807660108 0.866548482 0.83256776 0.819767565 0.895967824 0.892157527 291298262 chitinase Stackebrandtia nassauensis DSM 44728 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Glycomycetaceae;genus:Stackebrandtia;species:Stackebrandtia nassauensis; 0.831105884 0.833844351 0.811708365 0.82831174 0.815348117 0.851458669 0.849327318 0.838068526 0.819882423 0.822755929 0.862312605 295663348 aln Paracoccidioides sp. 'lutzii' Pb01 Organic Remediation Others NA NA 1.104651654 1.14224303 1.033238353 1.114914753 1.066214646 1.097658329 1.068880693 1.075585929 1.070744105 1.092012189 1.046913018 1.047777836 1.081023204 1.096167974 0.984240507 1.062794041 1.113818075 1.088637554 19548111 nirs Thauera aromatica Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Thauera; 0.922755729 0.883694936 0.901002389 0.913810333 0.872269301 0.834683535 0.82278639 0.862312889 0.936598014 0.892051669 0.856899251 0.920966147 0.892665879 0.832156646 0.857145596 0.897872721 0.851520165 33320478 dsrB Desulfobacterium oleovorans Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfococcus; 0.81143726 0.839595866 0.898544301 0.792992982 0.824550224 0.823877894 0.826228437 0.850880169 0.814673011 0.798343777 0.807788248 0.819749165 0.853350643 356608673 amyA Corynebacterium casei UCMA 3821 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium casei; 0.890918972 0.882357919 0.899337906 0.905052402 0.830393952 0.853557191 0.830321507 0.908212629 0.857827353 0.840890102 0.865638114 0.840581264 0.873185471 0.876644564 90336551 TIM Aurantimonas manganoxydans SI85-9A1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Aurantimonas;species:Aurantimonas manganoxydans; 0.801858379 0.816454507 0.811784408 0.856800232 347519579 dsra Desulfovibrio sp. A2 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 1.007956504 1.013915973 1.006528622 0.977225755 0.930029484 1.00916332 0.947275813 0.952208907 0.980324972 1.004388974 0.981367758 0.953002342 0.962659651 0.974381489 0.893546459 0.93305662 1.020110173 1.003874077 172072470 amyA Micrococcus luteus NCTC 2665 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Micrococcus;species:Micrococcus luteus; 1.016133991 0.978527904 0.995140375 0.989651252 0.942854261 0.936627833 0.917494204 0.931737844 0.980611198 0.939981172 0.962423145 0.954552642 0.969015846 0.95098617 0.909299696 0.941394651 1.005859898 0.976025268 303294878 alkb Ahrensia sp. R2A130 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ahrensia; 0.9426843 0.864137018 0.881330653 0.910534152 0.828391424 0.84139218 0.852016293 0.860188709 0.910103328 0.851267013 0.874126113 0.877932932 0.834821918 0.817088142 0.846841454 0.912915675 0.857045144 117959694 phenol_oxidase Ganoderma lucidum Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Ganodermataceae;genus:Ganoderma; 0.897946995 0.875642966 0.891703229 0.913224495 0.900888387 0.918306906 0.848561622 0.831320893 0.939780564 0.909543696 0.847138166 0.916113182 0.783325714 0.810594739 0.905501962 76884183 pchcf Nitrosococcus oceani ATCC 19707 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Nitrosococcus;species:Nitrosococcus oceani; 0.959105721 0.947066455 0.977614183 0.983345711 0.940713924 0.933553565 0.94723118 0.896337415 0.953689247 0.991059039 0.98552827 0.950434763 0.866340187 0.902938737 0.907129414 0.967877592 0.963628813 0.974742226 163757602 xylanase Hoeflea phototrophica DFL-43 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Hoeflea;species:Hoeflea phototrophica; 0.967669369 1.004985859 0.945503979 0.931091723 0.917941702 0.903574285 0.903130184 0.909616932 0.960175461 0.953524257 0.930818853 0.961235991 0.914490419 0.890134785 0.911303552 0.894093872 0.936989671 0.912332954 254271893 tfda uncultured bacterium Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria; 1.180852542 1.136681426 1.136530003 1.180187275 1.129355002 1.172449515 1.156044255 1.177286799 1.135201235 1.127333029 1.145323164 1.130960525 1.105479634 1.093519733 1.080660262 1.092753205 1.165381212 1.170334937 18034319 dsra Syntrophobacter fumaroxidans Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophobacteraceae;genus:Syntrophobacter;species:Syntrophobacter fumaroxidans; 1.184574598 1.193885983 1.156845893 1.185628272 1.167907992 1.216363287 1.151779124 1.137358882 1.162793663 1.192057441 1.15661553 1.160697965 1.173582191 1.17516826 1.154759947 1.165035992 1.150890122 1.189408554 384083826 soxY gamma proteobacterium HIMB30 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 0.893530009 0.943463671 0.897359955 0.952974943 0.884685238 0.920586239 0.874928912 0.884098811 0.889273958 0.917334949 0.933640728 0.961951128 0.885660299 0.895032241 0.932651192 0.84521327 0.951571551 0.941570906 83316828 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.984501153 0.952018482 0.96626283 0.951950549 1.003083168 0.972536009 0.952170108 0.938012519 0.952459044 0.974582094 0.924511604 0.965141141 0.949555922 0.945693523 0.948591069 0.930065165 0.989963411 0.99320123 84502903 nhh Oceanicola batsensis HTCC2597 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola batsensis; 1.499190421 1.486436228 1.445525227 1.418425587 1.41345602 1.481542682 1.404552507 1.416171927 1.413703904 1.425885379 1.420270981 1.427778731 1.39170819 1.419207845 1.389447545 1.417698355 1.452903562 1.467567037 388482526 pcpe Variovorax sp. DB1 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax; 0.985691847 0.957665366 0.927960939 0.990581685 0.952949211 0.95952581 0.972880724 0.979800677 0.978476533 0.961701992 0.950048478 0.954685348 0.907964908 0.932999574 0.920357342 0.902322811 0.99103955 0.966147293 254473394 PRI Pseudovibrio sp. JE062 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 0.922029097 0.942263695 0.834921138 0.919894753 0.833237795 0.856221578 0.855108367 0.847768828 0.905007438 0.925166927 0.857356543 0.853570267 0.851306567 0.862625455 0.909342963 0.961983676 21324896 amyA Corynebacterium glutamicum ATCC 13032 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium glutamicum; 0.80812543 0.796782734 0.759781529 0.852557818 402248059 mhqa Burkholderia cepacia GG4 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cepacia; 1.165223709 1.1433991 1.148287547 1.129747492 1.107239356 1.104742682 1.083477334 1.139604288 1.125003072 1.13051151 1.140960116 1.131721512 1.109407052 1.12324752 1.092474625 1.107280059 1.148688004 1.153348924 407275466 catechol_b Rhodococcus sp. P14 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 1.144155624 1.163583117 1.121514145 1.139382634 1.118377639 1.158368598 1.10590717 1.133152549 1.125794473 1.114721391 1.112739621 1.112545005 1.105374368 1.114001519 1.107804576 1.110555568 1.151291819 1.144614364 153155 amyA Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 0.784387368 0.808333296 0.787456926 0.857387385 94471143 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.991636186 1.06698646 1.084559721 0.97813518 1.045000272 0.987904208 1.026486046 0.985619656 0.99373597 1.020724786 1.096690838 0.998844946 1.006018121 0.853456473 0.85847532 0.975209685 1.102518225 0.939923307 345858673 ccmL Desulfosporosinus sp. OT Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfosporosinus; 1.02677594 1.034958408 1.034821861 1.059001149 1.03705544 0.984609324 0.996462074 1.026598251 1.04436219 1.008194901 0.995040286 1.054572755 0.991637598 0.990432178 1.000012608 0.960939717 1.017626016 0.972035237 398355260 one_ring_12diox Sinorhizobium fredii USDA 257 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium fredii; 0.813948935 0.780998796 0.811321256 0.786412048 0.833232908 0.827519346 0.813115418 0.797781844 0.797946128 0.868606215 380735493 arsc Pantoea sp. Sc1 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 0.936050892 0.905525362 0.933719337 0.957033235 0.854083162 0.867901756 0.901169322 0.947326284 0.949278746 0.884658196 0.864821641 0.904589315 0.8946072 0.836193497 0.849224749 0.850589625 0.91797187 0.903516269 374991904 endoglucanase Streptomyces bingchenggensis BCW-1 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces bingchenggensis; 1.027450134 1.048875907 1.010955647 1.023550599 1.027973611 1.058123816 1.016652938 0.950177114 0.994181262 0.983038648 0.957673508 1.009738262 0.953089254 0.943837896 0.918643174 0.949955258 1.043532358 1.064359052 217413012 xyla Bifidobacterium gallicum DSM 20093 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium gallicum; 1.034378089 1.021304848 0.97609551 1.020504016 0.984765319 0.989669252 0.948662376 0.993725253 0.988847211 0.988618534 0.974033708 1.019700465 0.976379131 0.930884096 0.880676365 0.965696336 1.015369896 1.017553491 330992472 amyA Gluconacetobacter sp. SXCC-1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter; 1.096157997 1.090271651 1.096436474 1.100062066 1.09408043 1.078452804 1.073465146 1.100017674 1.112418819 1.069442269 1.087059828 1.099372732 1.059963816 1.051927862 1.052547668 1.082349691 1.096999044 1.063937728 227069435 narb uncultured archaeon Nitrogen Assimilatory N reduction NA superkingdom:Archaea; 0.993579109 0.996613337 1.031192934 1.00117595 1.018176985 1.030264458 1.043886485 0.991968513 1.010392314 1.014712321 0.977965699 0.984709531 0.968584688 1.001443165 0.939637927 0.956579618 1.010804248 0.993727378 343493073 PRK Vibrio nigripulchritudo ATCC 27043 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio nigripulchritudo; 0.9033488 0.950714075 0.888711069 0.948978642 0.913831847 0.954659293 0.906627295 0.89343781 0.911185398 0.957071975 0.921353775 0.92731364 0.864534354 0.880170984 0.85444788 0.907302202 0.942100412 0.940791301 374413748 dsrB uncultured prokaryote Sulfur sulfite reduction NA 0.835630338 0.887166471 0.86260525 0.837952868 0.853702127 0.822743693 0.791000814 0.828227247 0.800381005 0.793389906 0.831003009 0.865086723 89897567 dmsa Desulfitobacterium hafniense Y51 Organic Remediation Others NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 0.957699716 0.97318741 1.005313158 0.971125599 0.969882905 0.975894803 0.952409977 0.990747127 0.977512627 0.991088111 0.946406315 0.951823456 0.938350209 0.958587531 0.996717012 0.963862267 0.955086415 0.99970453 32816567 chitinase Chromobacterium sp. C-61 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Chromobacterium; 1.17084189 1.174064062 1.116372481 1.185279111 1.118627329 1.150454244 1.115245484 1.144645831 1.124144099 1.153169427 1.168224811 1.181245345 1.140887519 1.131604471 1.098303735 1.152362392 1.120060011 1.149671272 290568106 acetylglucosaminidase Stackebrandtia nassauensis DSM 44728 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Glycomycetaceae;genus:Stackebrandtia;species:Stackebrandtia nassauensis; 1.174065478 1.169174208 1.130804843 1.113154776 1.135879966 1.164694867 1.096700664 1.108989039 1.117968588 1.139267875 1.140607856 1.122238249 1.113662431 1.139463321 1.080515911 1.109821979 1.148569692 1.163043451 228471267 ppk Porphyromonas uenonis 60-3 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Porphyromonas;species:Porphyromonas uenonis; 0.936504404 0.946512785 0.86395032 0.915595041 0.881631194 0.937396919 0.874970315 0.896333045 0.895396604 0.875448112 0.846698676 0.900952037 0.866366418 0.852555914 0.872036458 0.882135276 0.922547023 0.906036889 359552694 pula Pullulanibacillus naganoensis Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Pullulanibacillus; 0.923127038 0.946495692 0.893627388 0.916160041 0.886911643 0.920877754 0.843452985 0.922571338 0.920030935 0.918319303 0.879310002 0.869597865 0.784164079 0.881020535 0.831059754 0.845037563 0.921287566 0.924528242 111019788 mdld Rhodococcus sp. RHA1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 0.797890973 0.871657592 0.828432768 0.812684254 0.828140762 0.81964772 0.862946226 0.816396683 0.813532909 0.843545566 0.890845922 310796419 alpha_galactosidase_fungi Glomerella graminicola M1.001 Carbon Cycling Carbon degradation Other superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Glomerellaceae;genus:Glomerella;species:Glomerella graminicola; 0.925676895 0.946116932 0.896914131 0.885335875 0.891416819 0.96007876 0.920834535 0.855582424 0.944158937 0.951745436 0.890756841 0.901177298 0.89032743 0.947590614 0.920217473 0.901275843 0.919248318 0.935296507 209486944 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.8047926 0.815914421 0.86137288 0.802595685 241949401 phospholipase_B_fungi Candida dubliniensis CD36 virulence degradation NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;genus:Candida;species:Candida dubliniensis; 0.867444733 0.826136598 0.845823065 0.82166171 0.810672103 0.860273634 0.824177539 0.90752221 0.828320768 0.908813729 383704195 terc Rheinheimera nanhaiensis E407-8 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Rheinheimera;species:Rheinheimera nanhaiensis; 0.824731233 0.887634531 0.8229693 0.864485738 0.867992659 0.81271757 0.849114006 0.885368452 0.871777363 0.804888741 0.843251956 0.877050637 0.870999977 0.842572112 0.855302278 0.877488504 0.879631032 310913239 dsrB uncultured bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.909195458 0.9443011 0.974311401 0.947789522 0.960727571 0.988258132 0.972068621 0.961351322 0.947536318 0.960667821 0.973325347 0.942852254 0.940768026 0.908803085 0.842394661 0.891881881 0.957914305 0.984689521 118618327 atzb Mycobacterium ulcerans Agy99 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium ulcerans; 0.967069121 1.000784097 0.964351696 0.972930699 0.982547269 0.995011847 0.991475603 0.96424566 0.938661698 0.950559491 0.943686412 0.97129967 0.951345191 0.948042486 0.922517151 0.976599212 0.982682737 0.999963323 66801983 narg unidentified bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.192577575 1.148076307 1.15496361 1.177255531 1.154369085 1.181819094 1.158526343 1.16141518 1.178627733 1.145056052 1.162342323 1.179133119 1.144689057 1.113894885 1.144157179 1.173052354 1.182416853 1.139808044 338212267 acetylglucosaminidase Runella slithyformis DSM 19594 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Runella;species:Runella slithyformis; 0.906543676 0.834015215 0.832701819 0.927349755 0.871717027 0.832685103 0.885234299 0.870447148 0.923628858 0.872706175 0.83896877 0.880038942 0.827267653 0.850425533 0.828891018 0.815611813 0.931706054 0.841348497 68345374 phytase Pseudomonas fluorescens Pf-5 Phosphorus Phytic acid hydrolysis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas protegens; 1.03640241 1.075959851 1.017385574 0.980750448 0.976752299 0.987618285 0.958702079 0.927127365 0.973530417 1.032792772 1.004730809 1.000729396 0.979827738 1.021083431 0.980102638 0.94425156 1.006939363 1.043862801 15625035 soxY Rhodovulum sulfidophilum Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodovulum; 0.919840186 0.938871131 0.900534699 0.927569611 0.860393562 0.883640249 0.869529332 0.973195269 0.986366453 0.913694924 0.894114196 0.90805663 0.871811589 0.96504275 0.84323134 0.872525935 0.9088548 0.968226011 55772535 mer Thermus thermophilus HB8 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus;species:Thermus thermophilus; 0.813542207 0.857881119 0.912267612 0.80216498 0.872161757 0.810108901 0.915806442 0.81557755 0.803959719 0.852416062 0.82468154 0.803699944 0.851898281 124515930 mer Leptospirillum sp. Group II UBA Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Nitrospirae;class:Nitrospira;order:Nitrospirales;family:Nitrospiraceae;genus:Leptospirillum; 0.880031173 0.911326179 0.827355259 0.890669271 0.82350864 0.847550798 0.862329857 0.886404484 0.887106474 0.824384258 0.823233955 0.87750626 0.851498638 0.858601429 0.805938997 0.884127012 0.91678489 384086659 FBPase Acidithiobacillus thiooxidans ATCC 19377 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus thiooxidans; 1.111786064 1.069966792 1.080551057 1.121135233 1.060357303 1.068148732 1.064010127 1.07876864 1.11484728 1.104279364 1.080361185 1.087116234 1.058448381 1.012395172 1.030425496 1.072021301 1.115969158 1.107732543 373546518 cutinase Mycobacterium tusciae JS617 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tusciae; 0.921161217 0.937979128 0.846296597 0.917334072 0.832099001 0.898416362 0.842780915 0.874652623 0.938409756 0.916859193 0.823494064 0.904858458 0.856127669 0.942151126 0.95579219 299796315 merb Amycolatopsis mediterranei U32 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 1.249565666 1.250108995 1.213559786 1.245227576 1.219076456 1.244797122 1.194028024 1.189315607 1.219823224 1.195705691 1.197011225 1.201291369 1.167222497 1.156946463 1.164218525 1.16933756 1.250757725 1.24468458 192897524 ppk uncultured bacterium Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria; 0.810847744 0.850610655 0.833906151 0.817379351 0.815998433 0.804903326 0.810294213 0.793564091 0.803144909 0.862010436 93357785 mer Ralstonia metallidurans CH34 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 0.815162626 0.82623554 0.852057596 0.870640848 0.877271465 0.884762301 0.907829558 0.90844562 0.877645243 0.892576456 0.895397703 0.828160941 0.801003351 0.845987015 0.82841404 259454476 exaa(moxf) Sinorhizobium meliloti Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium; 0.832721359 0.789480236 0.832191519 0.828380678 0.847959657 0.799676131 0.827439606 0.828192009 0.851551628 0.852904684 0.825786098 0.799218706 0.873278715 0.900509428 255320764 GAPDH_Calvin Acinetobacter radioresistens SK82 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter radioresistens; 0.789983849 0.798884193 392243825 arsc Mycobacterium massiliense CCUG 48898 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium abscessus; 0.777237547 0.805623548 55791936 catechol_b uncultured bacterium Organic Remediation Aromatics Other aromatics superkingdom:Bacteria; 1.277764466 1.249161374 1.225233824 1.259572641 1.216276674 1.246878386 1.229182899 1.237307542 1.239343523 1.223852926 1.226076682 1.245805824 1.20727792 1.192135305 1.191623284 1.221750861 1.245868277 1.230411726 299060964 proO Erwinia billingiae Eb661 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia billingiae; 0.904505647 0.950069009 0.954682762 0.906577242 0.932829675 0.898025539 0.912513017 0.856452983 0.916643186 0.937602016 0.909198081 0.860976028 0.886221372 0.900330714 0.832248537 0.884239838 1.03272312 0.932742581 147225254 protease_serine_fungi Acremonium sp. F11177 Carbon Cycling Carbon degradation protein superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;genus:Acremonium; 1.356064391 1.329106425 1.328958295 1.350314485 1.320036366 1.378520187 1.32761099 1.328459965 1.325873274 1.319054874 1.343018552 1.311419857 1.30279177 1.274564689 1.262267945 1.28215383 1.367942836 1.321927703 51856883 narb Symbiobacterium thermophilum IAM 14863 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XVIII. Incertae Sedis;genus:Symbiobacterium;species:Symbiobacterium thermophilum; 0.964957776 1.016988449 0.988973909 1.037731796 0.995813105 1.008044589 0.953907792 0.967671508 0.976302749 1.00848843 0.99827425 0.995823649 0.993432086 0.963223338 0.972288642 0.981393011 0.999668977 1.016215691 373096263 atzb Cupriavidus basilensis OR16 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus basilensis; 0.825537502 0.817199952 0.855349772 0.83966675 0.855381518 0.85525955 0.902959776 0.851013834 0.805354046 0.845404959 0.846543734 0.820927657 170724160 tfda Pseudomonas putida W619 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 0.773291045 0.817715737 422314491 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.901174685 0.962291078 0.917040753 0.927483931 0.900082565 0.931003587 0.927341112 0.908021023 0.94631516 0.844216977 0.883024009 0.91506061 0.856517531 0.854463126 0.799845105 0.918881637 0.915270638 99030579 ppk uncultured bacterium Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria; 0.986384162 0.926656015 0.983171631 1.019770979 0.983694027 0.988744702 0.967987718 0.983959276 1.010158238 0.992920811 0.923768759 1.017224193 0.97326439 0.936826974 0.909475375 0.915852262 1.043158282 0.936326142 114778865 arsc Mariprofundus ferrooxydans PV-1 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Zetaproteobacteria;order:Mariprofundales;family:Mariprofundaceae;genus:Mariprofundus;species:Mariprofundus ferrooxydans; 0.993025553 0.970412687 0.987818035 1.025961654 1.019502988 0.960696981 0.971182588 1.012853457 1.003149184 0.952364794 0.989881783 0.995339633 0.926766979 0.888959799 0.893060655 0.891976897 0.974413769 0.955280063 392421304 alkk Pseudomonas stutzeri CCUG 29243 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 1.007073583 1.013471842 0.966754061 0.996001847 0.966039391 1.019109324 0.954788651 0.965688489 0.990135996 0.986837657 0.983237432 0.99502374 0.970440754 0.937842756 0.992043987 0.965179459 0.989893556 1.011016742 295800279 amyA Arthrobacter globiformis Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 1.1326684 1.122681904 1.126196869 1.114140587 1.110420601 1.124388167 1.084667994 1.095487947 1.108473027 1.110204458 1.098628027 1.10827837 1.09955288 1.117011723 1.118892892 1.102156965 1.110921151 1.100588865 343968570 fthfs Neisseria weaveri LMG 5135 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria weaveri; 0.959949592 0.982561596 0.968150254 0.985965144 0.882884449 0.955407228 0.897709276 0.994294509 0.959294035 0.965918949 0.939130547 0.94579224 0.89884042 0.921810896 0.868946117 0.916580828 0.994288937 0.983519181 227822140 linc Sinorhizobium fredii NGR234 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium fredii; 1.194624016 1.153623222 1.144603302 1.17617293 1.148764335 1.173664259 1.145393664 1.170296398 1.169440373 1.145770286 1.152607191 1.168602497 1.11821063 1.135004525 1.123319231 1.148840095 1.184862703 1.142202223 115394382 pmoa uncultured bacterium Carbon Cycling Methane Methane oxidation superkingdom:Bacteria; 0.889411819 0.814452316 0.918285654 0.953370648 0.893958044 0.885844791 0.928842991 0.961408897 0.941115825 0.871885013 0.881395116 0.894923672 0.850097125 0.806634817 0.818155951 0.899403855 0.830196487 375146417 amyA Niastella koreensis GR20-10 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;genus:Niastella;species:Niastella koreensis; 1.012524078 0.974965839 0.951686525 0.995721719 1.007151944 0.937669558 0.911526988 0.97662817 0.985342674 0.951117456 0.914573695 0.974520473 0.871661424 0.876724462 0.858783795 0.904227897 0.971941129 0.992367208 66801995 narg unidentified bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.793394558 0.819228958 256725305 rgh Nectria haematococca mpVI 77-13-4 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Fusarium;species:Nectria haematococca; 0.968409122 0.992099273 0.976339933 0.955475204 0.941350106 0.953260492 0.889205185 0.932477565 0.957921057 0.973080009 0.950600051 0.973410536 0.922987131 0.983724218 0.874644908 0.956731967 0.994192153 0.962673408 83814676 amyA Salinibacter ruber DSM 13855 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;order:Bacteroidetes Order II. Incertae sedis;family:Rhodothermaceae;genus:Salinibacter;species:Salinibacter ruber; 0.821365854 0.839006355 0.791708805 0.797473275 0.83898315 0.841192653 0.809175703 0.868053865 0.836497081 0.815453729 315410665 amyA Micromonospora sp. L5 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Micromonospora; 1.245789756 1.224280351 1.192172454 1.191548122 1.171517676 1.222264554 1.177296859 1.164841502 1.162110121 1.169941577 1.178064196 1.170357955 1.15848061 1.158870861 1.147937081 1.181643456 1.202721968 1.189380661 354580070 bphF1 Paenibacillus lactis 154 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus lactis; 1.040616656 0.969602968 0.991111854 0.992915272 0.943257894 0.967571875 0.917912665 0.981021283 0.982538461 0.97290322 0.955121355 0.943799781 0.957394799 0.936970147 0.912143151 0.969747981 1.01333245 0.969565332 302541866 amyA Streptomyces hygroscopicus ATCC 53653 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces himastatinicus; 1.199880113 1.185982043 1.141828679 1.22630714 1.169193818 1.163945557 1.164136339 1.223539722 1.211532256 1.182279606 1.128131432 1.209329038 1.13978851 1.145254335 1.14931281 1.155493499 1.182801855 1.181011161 29569844 TIM Microcystis aeruginosa Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Microcystis; 0.908224123 1.012764161 0.899842771 0.902538175 0.878307126 0.93256257 0.899497739 0.903314069 0.962715895 0.942215493 0.885747686 0.932069213 0.925767045 0.962556541 0.859997314 0.916977235 0.919303985 0.923746176 23392985 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.079937381 1.104624861 1.055839343 1.100009929 1.041529109 1.088616355 1.040160128 1.094032416 1.06690014 1.088960522 1.0490042 1.098533406 1.061764969 1.029959024 1.003919717 1.005037374 1.131093953 1.020743796 332377230 fthfs uncultured bacterium Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria; 0.826664345 0.838755707 0.828950022 0.880888263 0.81368694 0.84019155 0.815589968 0.842880749 0.838396395 0.844136973 0.815107303 0.875703636 0.799964798 0.823645151 0.854071512 325923169 RgaE Xanthomonas gardneri ATCC 19865 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas gardneri; 1.390213114 1.346380558 1.358705924 1.391978493 1.346322968 1.413510218 1.374521812 1.39627825 1.364936909 1.350405208 1.36711835 1.380238186 1.341462246 1.329206555 1.329305195 1.38311297 1.414700183 1.361076189 310761112 amyA Achromobacter xylosoxidans A8 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter;species:Achromobacter xylosoxidans; 1.095477919 1.06383788 1.080345847 1.102821426 1.008552229 1.084410327 1.031726003 1.050880839 1.065695992 1.059035328 1.03729 1.05378065 1.04364215 1.022242521 0.99713559 1.024467192 1.097510386 1.058668412 283833433 nfsb_2 Citrobacter youngae ATCC 29220 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter youngae; 0.793865742 0.80029128 0.861981428 0.853905894 0.82294499 0.814142518 0.850595548 0.805774348 0.808794617 0.819184624 0.793272401 0.80392451 0.892451644 363421380 ppx Rhodococcus pyridinivorans AK37 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus pyridinivorans; 1.222303157 1.249875336 1.202529372 1.197372839 1.183998944 1.238738195 1.19376662 1.204616597 1.209752148 1.219254702 1.19746762 1.199734798 1.158729419 1.208416196 1.160589403 1.188985028 1.187713629 1.236888583 296263189 terc Roseomonas cervicalis ATCC 49957 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Roseomonas;species:Roseomonas cervicalis; 1.419559847 1.339001547 1.338226196 1.350217889 1.380896234 1.356063528 1.366931126 1.377081813 1.350040061 1.331004079 1.36551869 1.386929893 1.350747824 1.29013267 1.314343511 1.330343203 1.346144925 1.300938239 356477509 cutinase Mycobacterium thermoresistibile ATCC 19527 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium thermoresistibile; 1.470377225 1.446665458 1.427894642 1.461204009 1.46023911 1.472837683 1.425118189 1.460432525 1.441912978 1.427294666 1.449283338 1.470022652 1.438649959 1.408294288 1.432570543 1.449530778 1.454149367 1.390303789 150396782 PRI Sinorhizobium medicae WSM419 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 0.888840476 0.867544142 0.915151581 0.909799591 0.921069157 0.919255839 0.941591078 0.951435668 0.902221227 0.881634536 0.840955147 0.854548269 0.84711561 0.821445291 0.838554548 0.898352756 0.910441331 407711375 tmoabe Burkholderia phenoliruptrix BR3459a Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phenoliruptrix; 0.857270135 0.821520418 0.90165009 0.883917366 0.89779973 0.833937813 0.885324949 0.882032977 0.853621045 0.856414115 0.916400305 0.887954175 0.881254564 0.83630128 0.872913665 0.874644006 0.820165625 0.872389024 86574218 phn Rhodopseudomonas palustris HaA2 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 0.875517637 0.886485981 0.88600482 0.898975233 0.876674176 0.868839362 0.905699115 0.875190215 0.880479213 0.870561304 0.904673847 0.864287223 0.828143913 0.827026156 0.868079991 0.842288394 0.875013212 0.919939479 243082670 CsoS1_CcmK Clostridium botulinum E1 str. 'BoNT E Beluga' Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium botulinum; 0.909987324 0.833467738 225570901 amyA Clostridium hylemonae DSM 15053 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hylemonae; 0.816351115 0.894167501 0.826326065 0.8254595 0.823943364 0.803345978 0.823466601 0.804086338 0.829030351 0.813357492 0.956696509 0.841180164 0.823238076 158317215 cellobiase Frankia sp. EAN1pec Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 0.986013682 1.004489027 1.028287855 0.993964443 0.93871219 0.955145026 0.925234579 0.924423837 0.983892257 0.972433841 0.931968399 0.960220375 0.943122359 0.951661054 0.898200888 0.917760394 0.991143015 0.967340594 257171027 Bacteriorhodopsin Halomicrobium mukohataei DSM 12286 Secondary metabolism Pigments Rhodopsin superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halomicrobium;species:Halomicrobium mukohataei; 1.079970333 1.128741416 1.039295992 1.062486015 1.063904741 1.109092738 1.004446651 0.956635068 1.088353599 1.039302733 1.088369871 1.04469971 0.996098382 1.019754504 0.996506051 1.002867416 1.078031725 1.114547181 315503000 amyA Micromonospora sp. L5 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Micromonospora; 1.135044101 1.122952686 1.157515471 1.131934968 1.140700662 1.165209877 1.133800988 1.116517588 1.126565567 1.140388173 1.119752566 1.107830869 1.106562599 1.109441311 1.078829163 1.080066911 1.145506999 1.12650547 365273221 amyA Bradyrhizobium sp. ORS 285 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 1.209816042 1.124718639 1.03520544 1.109443809 1.040577392 1.076212737 1.080229741 1.088176899 1.107403486 1.079266309 1.045886963 1.086028743 1.078054844 1.027517881 1.011822914 1.041065206 1.142101651 1.135252858 164456198 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 0.969771082 1.053062767 1.015914356 1.004000168 1.014524372 1.056844 0.986403263 0.965999251 1.003962699 0.99080532 0.994864225 0.987728687 0.980956415 0.98169947 0.952288678 1.003199727 1.022511895 1.069706248 73762776 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.864962377 0.880714496 0.896827768 0.87797416 0.83615064 0.870246833 0.862934852 0.860634544 0.90402349 0.802982337 0.774458676 0.837402141 365860860 xylg Streptomyces sp. W007 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 0.920962264 0.915908144 0.891106759 0.976778411 0.8824738 0.900904106 0.913771452 1.119384924 0.944872259 0.897270364 0.880422787 0.918655582 0.868970291 0.898273077 0.90478756 0.864290855 0.966773142 0.920405119 388569541 urec Hydrogenophaga sp. PBC Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Hydrogenophaga; 1.109273892 1.08197165 1.067897799 1.099521641 1.092251286 1.088036418 1.08544098 1.062330304 1.089493813 1.076291053 1.066671521 1.091530316 1.032386345 1.026705104 1.017454217 1.03372483 1.085222046 1.049695357 302658226 glucoamylase Trichophyton verrucosum HKI 0517 Carbon Cycling Carbon degradation Starch superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Arthrodermataceae;genus:Trichophyton;species:Trichophyton verrucosum; 0.960934295 0.945744801 0.908991852 0.959971956 0.94074637 0.889314177 0.931158828 0.943152368 0.945474565 0.932841962 0.918084223 0.957175942 0.919214273 0.897941844 0.988694958 0.886593365 0.955778863 0.94033354 422314241 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.851910561 0.853630135 0.828545136 0.82254848 0.802206687 0.824728674 349781083 fccab Thioalkalivibrio thiocyanoxidans ARh 4 Sulfur Sulfide Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio;species:Thioalkalivibrio thiocyanoxidans; 0.938431786 0.929546653 0.964340208 0.943652304 0.918364392 0.919890848 0.89630738 0.941614562 0.942727498 0.894256774 0.884448795 0.938471193 0.881541342 0.934421243 0.856217618 0.935755655 0.953052706 0.978741839 69934124 arsc Paracoccus denitrificans PD1222 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 0.9992002 1.016266912 1.007735495 1.001702256 1.020105221 1.019335536 1.012478699 1.003440938 1.02113112 1.0446576 1.009721162 1.031374499 1.011530274 1.036459306 0.971363352 1.022017697 1.023283301 1.049754381 222154058 mnp Pleurotus ostreatus Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Pleurotaceae;genus:Pleurotus; 0.920162986 0.908308609 0.900198351 0.915686173 0.894160449 0.911418225 0.899551118 0.849998347 0.916808965 0.924675178 0.91856705 0.908542021 0.894058923 0.878317186 0.845720467 0.861827436 0.938460402 0.934404219 226362872 cysJ Rhodococcus opacus B4 Sulfur Reduction NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus opacus; 0.926193019 0.932583791 0.905950978 0.857335457 0.883790673 0.841631333 0.827110111 0.885659544 0.930044175 0.883745027 0.797408865 0.823939236 0.880963827 0.843270553 0.844507448 0.88498377 336105682 xylanase Cellvibrio] gilvus ATCC 13127 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas;species:[Cellvibrio] gilvus; 0.972530949 0.975530877 0.890666613 0.890646952 0.931737712 0.921773504 0.827634566 0.872379304 0.886046521 0.914283195 0.850210762 0.902100541 0.955528014 0.911123291 0.921675423 0.870608965 0.980867439 1.007251378 295695612 xylj Kyrpidia tusciae DSM 2912 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Kyrpidia;species:Kyrpidia tusciae; 1.063849424 1.073370638 1.070563271 1.07477769 1.062834228 1.028803295 1.070017198 1.047242998 1.10050205 1.049343937 1.057795625 1.07273054 1.006910438 1.001442043 0.993653061 1.0147785 1.051736562 1.071902094 146409880 cellobiase Bradyrhizobium sp. BTAi1 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.767114845 0.814374812 0.81670924 0.841854204 339323809 tfdb Cupriavidus necator N-1 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 0.96385844 0.999134826 0.921887738 0.992422101 0.987021469 0.975075612 0.958343994 0.963236994 0.942215444 0.988188885 0.943192312 0.95640161 0.970077476 0.928364801 0.937921337 0.95789535 0.964498544 0.995919419 350562507 fccab Thioalkalivibrio thiocyanoxidans ARh 4 Sulfur Sulfide Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio;species:Thioalkalivibrio thiocyanoxidans; 0.841108967 0.842525501 0.825030765 0.791032007 0.827882636 0.83618679 0.817241099 0.81476565 0.870481287 0.84313391 326412186 nhh Polymorphum gilvum SL003B-26A1 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;species:Polymorphum gilvum; 1.16531845 1.141986138 1.116703951 1.166021468 1.162667545 1.127676656 1.144609029 1.174605654 1.158583327 1.097308385 1.119353135 1.16526073 1.125912031 1.101769278 1.113269906 1.121202982 1.155561561 1.107577323 47155102 mcra uncultured methanogenic archaeon Carbon Cycling Methane Methanogenesis superkingdom:Archaea;phylum:Euryarchaeota; 0.8286529 0.875222345 0.804278048 0.872075498 0.835125789 0.826066205 0.869689169 0.824660656 0.851024954 0.875037775 0.804184048 0.886277311 0.874123279 0.874836852 0.899763981 302423574 ppx Verticillium albo-atrum VaMs.102 Phosphorus Polyphosphate degradation NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticilium;species:Verticillium albo-atrum; 0.994050805 0.847297238 0.836646132 0.869475349 0.811259676 0.838675046 0.827572422 0.835490522 0.843921707 0.827179747 0.859584128 0.831813382 0.833229431 0.905941016 0.866470221 0.883724926 83591562 GAPDH_Calvin Rhodospirillum rubrum ATCC 11170 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum rubrum; 0.818777691 0.818257655 0.818124361 0.801344059 0.861244191 0.856314897 0.833892994 0.879723872 0.892338973 302479657 mannanase Streptomyces griseoflavus Tu4000 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseoflavus; 1.245791051 1.246108483 1.222253865 1.235077472 1.265122428 1.269311266 1.231201555 1.229532276 1.230606335 1.216363482 1.261512526 1.274057495 1.246539369 1.210525957 1.212012707 1.242295163 1.238203088 1.22955219 121227812 phn Burkholderia mallei SAVP1 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia mallei; 0.921219278 0.915308568 0.984780118 0.939391481 0.972860639 0.907421265 0.919012717 0.910805083 0.979286019 0.98446948 0.973517099 0.919414793 0.913178039 0.947035488 0.879252921 0.926518807 0.904388101 0.953222978 53636303 xylanase Cryptovalsa sp. BCC 7197 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Xylariales;family:Diatrypaceae;genus:Cryptovalsa; 0.915860961 0.918454146 0.929688805 0.897951604 0.937858575 0.906372778 0.929658503 0.899122139 0.92104756 0.925569342 0.905974677 0.928960345 0.872501241 0.892512758 0.844256858 0.859440151 0.927243079 0.951339787 336100293 FBPase Oligotropha carboxidovorans OM5 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Oligotropha;species:Oligotropha carboxidovorans; 1.053655305 1.053576334 1.072423541 1.098196613 1.114899833 1.061647781 1.095788925 1.086774919 1.099023783 1.086788486 1.142921847 1.096014682 1.061699795 0.989330591 1.013168281 1.034753569 1.102008718 1.081303881 328545695 phdci Polymorphum gilvum SL003B-26A1 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;species:Polymorphum gilvum; 1.552636259 1.543070208 1.531855532 1.536840104 1.512450287 1.543256103 1.514818114 1.538912093 1.515238162 1.526889966 1.519336401 1.549299493 1.488902406 1.484538459 1.495469357 1.504335826 1.526992054 1.494275907 313836067 acetylglucosaminidase Propionibacterium acnes HL037PA2 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium;species:Propionibacterium acnes; 1.112034578 1.085897845 1.064106535 1.110141625 1.041513324 1.077940819 1.0365829 1.046169887 1.071532123 1.065283922 1.033850474 1.056917213 1.016158898 1.049237557 1.012922509 1.051723464 1.102402487 1.083620301 32470881 nira Rhodopirellula baltica SH 1 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Rhodopirellula;species:Rhodopirellula baltica; 1.311456627 1.283480232 1.279387819 1.290070234 1.26770531 1.289383425 1.241187888 1.266935262 1.280853009 1.25525459 1.270057955 1.298369079 1.253183116 1.228091556 1.251241402 1.239852321 1.296817225 1.265931542 85706829 GAPDH_Calvin Roseovarius sp. 217 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 0.794431776 0.834932581 0.822960641 0.841316696 0.881379564 0.825014185 113526719 one_ring_12diox Ralstonia eutropha H16 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 0.988687113 0.993605452 0.920643295 0.997161537 0.95828541 0.983314989 0.930960325 0.926611651 0.957838766 0.958077162 0.948513439 0.935954885 0.916990927 0.924458219 0.861391333 0.902553532 0.990324436 1.010637257 242240184 pme Dickeya dadantii Ech703 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya dadantii; 0.953551932 0.933273522 0.978045388 0.900966216 0.829997199 0.928144226 0.847270212 0.909874508 0.897768566 0.940093072 0.842895287 0.88378618 0.874476836 0.927327002 0.944790715 302036197 oorA Candidatus Nitrospira defluvii Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle superkingdom:Bacteria;phylum:Nitrospirae;class:Nitrospira;order:Nitrospirales;family:Nitrospiraceae;genus:Nitrospira; 1.242882965 1.206615997 1.191682475 1.244194788 1.219046325 1.206796319 1.205191405 1.221517364 1.211887511 1.179238858 1.190182844 1.217981951 1.201208856 1.162495604 1.179149862 1.192838263 1.209724727 1.170872224 326199480 chnb Gordonia neofelifaecis NRRL B-59395 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia neofelifaecis; 1.110106841 1.111189944 1.121324075 1.063376926 1.010814327 1.043351686 0.984086041 1.03341748 1.074088398 1.09114495 1.052028675 1.062873295 1.043913522 1.023374335 1.039126669 1.016602549 1.11139078 1.12923209 332747420 amyA Streptomyces sp. Tu6071 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 0.980021446 1.021890626 0.993488293 0.989171667 0.98464993 0.986578985 0.959080005 0.971904086 0.939535574 0.98544522 0.968920957 1.006612384 0.955605876 0.905652977 0.903063504 0.986881642 0.98532073 0.982125058 115376492 xyla Stigmatella aurantiaca DW4/3-1 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 0.820886894 0.784958641 0.825923528 0.863670795 0.863282799 0.841415419 0.839245873 0.815082676 0.845041014 0.845510786 0.814455186 302441493 cellobiase Streptomyces sp. C Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 1.309252547 1.325907149 1.255166727 1.286309191 1.245067188 1.318775213 1.210927335 1.23318689 1.231916045 1.254981985 1.251363043 1.253678406 1.222156096 1.256674249 1.194545991 1.245966734 1.306276675 1.29407189 139478563 mer uncultured soil bacterium Metal Homeostasis Mercury Detoxification superkingdom:Bacteria; 1.142065977 1.168297847 1.141666246 1.143579889 1.161404166 1.170219485 1.098966752 1.127475632 1.084830784 1.133471815 1.163414646 1.145714166 1.122358601 1.089275992 1.11545411 1.090873732 1.130282944 1.170454542 375145744 ara Niastella koreensis GR20-10 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;genus:Niastella;species:Niastella koreensis; 0.790921033 0.789305906 0.788805717 0.837816068 320106667 acetylglucosaminidase Terriglobus saanensis SP1PR4 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Terriglobus;species:Terriglobus saanensis; 0.877063418 0.953864112 0.818628921 0.837368056 407275261 bphd Rhodococcus sp. P14 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 1.194747957 1.158620785 1.190160868 1.186657531 1.167998554 1.198531871 1.133475661 1.145233074 1.182895928 1.133272461 1.137973077 1.169685785 1.169339337 1.110584164 1.139644255 1.152211542 1.202015966 1.185731154 259169713 terc Lactobacillus antri DSM 16041 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus antri; 1.023101021 0.992778218 0.907830741 1.011520529 0.969068772 0.964698167 0.947875471 0.969712209 1.01341889 1.011528213 0.965972481 0.980297465 0.951903158 0.901911528 0.908093152 0.949650267 0.982836265 0.95619859 111220927 trzn Frankia alni ACN14a Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia;species:Frankia alni; 1.137372318 1.13988188 1.121196287 1.17063729 1.098353308 1.164727672 1.152615575 1.142146064 1.138836761 1.129695221 1.111917739 1.15386464 1.095957393 1.091721347 1.036793428 1.120669393 1.123848057 1.133386926 119391609 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.14913929 1.085052748 1.132830041 1.104989198 1.117098026 1.173185526 1.137126472 1.144994779 1.118114294 1.087235983 1.158455026 1.10676425 1.121797887 1.076089683 1.025933813 1.077952565 1.130421054 1.09118421 56786630 phenol_oxidase Trametes versicolor Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Trametes; 1.220191433 1.205935328 1.197744487 1.240414708 1.193456136 1.207562951 1.194180092 1.197905802 1.210322261 1.186773337 1.17934904 1.217257616 1.162347065 1.160368791 1.125524408 1.179747489 1.228382191 1.195093374 256378976 pme Actinosynnema mirum DSM 43827 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Actinosynnema;species:Actinosynnema mirum; 1.173494947 1.151149043 1.198266091 1.205111422 1.215060397 1.206491792 1.216778446 1.255301808 1.187505878 1.159646142 1.19530663 1.209275552 1.171851528 1.141994278 1.185832118 1.153301301 1.14837551 1.150898866 110819516 catechol Rhodococcus sp. RHA1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 0.941096778 1.02742343 1.127542452 0.977093347 1.029261023 1.07954744 0.948146191 1.026504599 1.062015308 0.956002769 0.943288662 0.937503 0.955487536 0.922756245 0.903118413 1.132874802 1.045763578 1.028045898 311286204 pcag Pseudomonas fluorescens WH6 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 0.958916669 0.978239067 0.943641352 0.957907595 0.936819209 0.923907114 0.962201037 0.960437447 0.954030223 1.026125138 0.939502463 0.98492947 0.921862153 0.928158706 0.927444782 0.950398349 0.948948007 0.933775061 398805382 cmci Polaromonas sp. CF318 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 1.116925128 1.091775034 1.065647968 1.106573007 1.089231174 1.123161006 1.06434754 1.090923294 1.121112453 1.092712244 1.082290731 1.114203139 1.063301441 1.064269703 1.04608253 1.081016597 1.120713834 1.105030977 10639669 mdlc Thermoplasma acidophilum Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Archaea;phylum:Euryarchaeota;class:Thermoplasmata;order:Thermoplasmatales;family:Thermoplasmataceae;genus:Thermoplasma; 1.136644957 1.084621484 1.110930868 1.131707738 1.148147143 1.086360099 1.098853494 1.124776146 1.140405815 1.115804623 1.147931499 1.130021424 1.140753706 1.082537675 1.052728945 1.07547234 1.113672096 1.072948732 193223383 arylest Cupriavidus taiwanensis Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus; 0.908119002 0.846205293 0.879843944 0.835580503 0.822514258 0.829233683 0.823725389 0.826057213 0.848887381 0.82843073 0.862496337 0.896604931 0.836227204 124898689 endochitinase Burkholderia dolosa AUO158 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia dolosa; 1.089034156 1.110445519 1.069877805 1.047615421 1.038958772 1.074020817 1.019508484 1.036456246 1.072647827 1.066453275 1.018483977 1.030762457 0.983212771 1.009505546 0.927744004 0.995728171 1.014727254 1.060935977 126236393 cdh Mycobacterium sp. JLS Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 1.020723129 1.012219393 0.981618753 0.936425991 0.937960477 1.016200609 0.939997993 0.928042396 0.946507623 0.999926812 0.944246574 0.931417357 1.043958131 0.957933543 0.89250418 0.978891211 0.927717838 0.987092053 332671931 rgl Cellulomonas fimi ATCC 484 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas;species:Cellulomonas fimi; 1.349886613 1.309577845 1.314435538 1.335642375 1.297992329 1.322875971 1.301291065 1.320605156 1.31872636 1.303385851 1.298152155 1.331253707 1.288961424 1.245829623 1.276420629 1.294838806 1.339656737 1.292560876 254786902 nirb Teredinibacter turnerae T7901 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;genus:Teredinibacter;species:Teredinibacter turnerae; 0.77704345 0.812136484 0.797234789 0.83379617 0.829369494 0.827505624 0.828852487 0.813172095 0.797459212 0.847447759 112464119 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.891717367 0.916354174 0.88844921 0.830177557 0.891734399 0.878689004 0.850266353 0.882728184 0.866934302 0.86066819 0.840655734 0.850875528 0.832378059 0.89598079 214029983 alkk Ruegeria sp. R11 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 1.294349974 1.217565679 1.248893107 1.282089013 1.242025355 1.247833777 1.284519785 1.275238083 1.27989282 1.203317387 1.203702449 1.255804252 1.245516594 1.166430497 1.230476216 1.209779282 1.280074165 1.220694191 70982754 cellobiase Aspergillus fumigatus Af293 Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Aspergillus fumigatus; 1.105146732 1.046574161 1.018794422 1.111479367 0.992813282 1.088384538 1.026910635 1.074727962 1.081865057 1.049505599 1.072727621 1.060756904 1.016053132 1.041913167 0.971171599 1.038024083 1.129498237 1.080915616 89361802 ppx Xanthobacter autotrophicus Py2 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 1.012520264 1.074587849 0.977052559 0.999916711 1.009923716 1.027700651 0.987780057 0.951098992 1.006859962 0.998983193 0.958382196 0.956562738 0.934270792 0.950531216 0.876486546 0.951168715 1.018890302 1.07376377 222102113 one_ring_12diox Agrobacterium radiobacter K84 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 0.834128342 0.91087273 0.837448418 0.870099688 0.840227257 0.844578196 0.823360186 0.874105029 0.826160846 0.844522138 0.837721028 0.878142159 0.869329393 158138808 napa uncultured bacterium Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria; 0.865449496 0.804812792 0.867966987 0.843507797 0.785104755 0.809245238 0.824024991 0.799486642 0.818919213 0.817754126 0.827380571 116694497 catechol_b Ralstonia eutropha H16 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 0.917679169 0.893658929 0.912588717 0.91964641 0.916777315 0.901230907 0.933405439 0.903953175 0.91706373 0.903050322 0.908286743 0.935461385 0.873705889 0.854768748 0.878867936 0.866070743 0.902895468 0.925766174 380879691 GAPDH_Calvin Thiorhodovibrio sp. 970 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiorhodovibrio; 0.78495041 0.877337073 0.849396231 0.804552488 0.813917943 0.933028265 0.946566839 0.780598617 0.915295698 0.976486423 0.8381629 0.818071904 0.859000743 0.903416277 0.845292817 0.918917605 386383510 chitinase Streptomyces tsukubaensis NRRL18488 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces tsukubaensis; 1.166981388 1.133594965 1.116403131 1.188330857 1.107408139 1.088498334 1.088329055 1.136469043 1.157254542 1.115965603 1.107095829 1.159181405 1.112663472 1.075911618 1.085785006 1.118814019 1.129545978 1.097996336 395220285 terc Pontibacter sp. BAB1700 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Pontibacter; 1.251366638 1.20742604 1.206446069 1.219317523 1.204695186 1.24199537 1.186696576 1.185322522 1.20119464 1.161364743 1.181704078 1.177497002 1.178165182 1.156411249 1.163961771 1.178249155 1.238725883 1.205628149 223714300 arra uncultured bacterium Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 0.803247596 0.81822143 0.807954275 0.791240829 0.793453155 0.782763927 0.812727875 307585941 tktA Burkholderia sp. CCGE1003 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 0.808376529 0.818686682 0.805582915 0.836344456 363996468 cutinase Mycobacterium abscessus subsp. bolletii BD Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium abscessus; 0.860807657 0.843197145 0.862120388 0.848671854 0.824751837 0.880551613 0.848865129 0.801878118 0.850660523 0.821859369 0.82376637 0.830915296 0.86304379 0.914458466 339647481 aps_apra uncultured bacterium Sulfur adenylylsulfate reductase NA superkingdom:Bacteria; 1.181575443 1.150989744 1.134701031 1.156931079 1.149454104 1.161739936 1.136291382 1.168908841 1.148370816 1.145280882 1.124290034 1.174905299 1.104076009 1.11260767 1.142642526 1.123793014 1.151474403 1.154038753 307586962 xyla Burkholderia sp. CCGE1003 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 0.862343374 0.862686713 0.831075059 0.850782405 0.815307137 0.823261252 0.853375892 0.892335175 13249533 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.103141626 1.087317531 1.100585956 1.121341592 1.085795903 1.109563688 1.059146596 1.058731352 1.109882979 1.070823258 1.03700644 1.042292296 1.05418139 1.024819072 1.018647945 1.043407424 1.152382818 1.090509762 342809905 atzb Vibrio splendidus ATCC 33789 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio splendidus; 0.890410397 0.959669456 0.920857704 0.957152392 0.90843355 0.969025766 0.878675302 0.901961547 0.879165857 0.951043439 0.869086359 0.935481848 0.909690071 0.929276439 0.850808395 0.926174641 0.92696382 0.933822404 156866664 amyA Clostridium leptum DSM 753 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium leptum; 0.86145819 0.809329027 0.855762259 0.862624656 0.847648001 0.903513483 0.888843925 0.860357721 0.857712775 0.858444304 0.817964641 0.903766179 0.846178275 0.836837968 0.901453111 0.872257147 0.947766504 39936624 arsm Rhodopseudomonas palustris CGA009 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 1.329607548 1.292854681 1.251863643 1.257925337 1.239337262 1.299456173 1.244851089 1.261579401 1.260644997 1.231984243 1.256769571 1.263556314 1.238576755 1.240715154 1.232708588 1.258662339 1.291985344 1.249927357 156744087 amyA Roseiflexus castenholzii DSM 13941 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus;species:Roseiflexus castenholzii; 0.976738669 0.959948804 0.987440288 0.949219004 1.017763599 0.986083493 0.963116498 0.912196928 0.944270106 0.949473326 0.988677101 0.929732673 0.895318377 0.918365529 0.906794887 0.949973653 0.964299161 0.984283581 16506247 nasa Vibrio sp. AEA-2001/8 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 1.003563873 1.094607776 1.007275232 1.042161325 1.011551756 1.033785252 0.988305411 0.957163455 0.993021674 0.983917032 0.970104659 1.029440723 1.006068975 0.931342004 0.981278319 1.02105912 1.02950193 1.009998444 268611162 mannanase Ruminococcus flavefaciens FD-1 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus;species:Ruminococcus flavefaciens; 0.812032816 0.811014726 0.83755935 0.847654387 0.815419072 0.8170492 0.813687545 0.818781958 0.886192504 0.869926502 0.870556092 0.868409861 0.807235331 0.804383523 60476006 rubisco uncultured bacterium Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria; 1.028684632 1.037095449 1.053603268 1.042022644 0.977431923 1.067586795 0.981173011 1.051701868 1.037340823 1.0331949 1.009979534 1.029909649 0.935348854 0.98940667 0.952270535 1.010897109 1.052282256 1.063326963 353194849 bphF1 Halobacterium sp. DL1 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halobacterium; 0.812592161 0.803933278 0.815187571 0.838583892 0.840279305 0.825876997 325961954 amyA Arthrobacter phenanthrenivorans Sphe3 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter phenanthrenivorans; 0.989991121 1.063397097 0.948940582 0.987589899 1.008902995 0.971190349 0.964951474 0.958503309 0.989649916 0.990612106 0.929634981 0.991869847 0.981478378 0.974550934 0.906124837 0.960332226 1.011689253 1.018308071 171997218 limeh Burkholderia ambifaria MC40-6 Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ambifaria; 0.912132895 0.970987994 0.879252095 0.971404735 0.912678584 0.936517189 0.877712319 0.903742935 0.915742222 0.97498676 0.908749159 0.94959863 0.907877002 0.891373149 0.855490024 0.937612404 0.894836398 0.919592089 242814941 arsm Talaromyces stipitatus ATCC 10500 Metal Homeostasis Arsenic Detoxification superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 1.040613507 0.939354924 0.93832775 0.978049767 0.970464516 0.956916609 1.022442149 1.031604937 1.003290751 0.961695827 0.961155939 0.978843685 0.961780565 0.900752019 0.902799672 0.898350595 1.008860208 0.934972818 315598908 pgk Variovorax paradoxus EPS Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 0.900566721 0.795889791 0.864597942 0.817345906 0.840990914 0.875821769 0.841854254 0.813983841 0.854754178 0.895908255 0.862604052 0.848015128 0.83966544 0.813632823 0.815970712 0.822786427 0.845477545 0.876311307 350540926 phytase Serratia sp. TN49 Phosphorus Phytic acid hydrolysis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia; 1.008849959 1.005355744 1.004913571 1.009187371 0.996772586 0.963619704 0.940759613 0.966319955 0.989772367 0.982619732 0.977680829 1.00225989 0.996697963 0.951204523 0.943438387 0.963517183 1.021879331 0.975601741 373876341 b_lactamase Leptonema illini DSM 21528 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Leptospiraceae;genus:Leptonema;species:Leptonema illini; 1.191040527 1.062880396 1.104680947 1.127772797 1.067566316 1.007966534 1.033036622 1.047296688 1.088920602 1.037983514 1.084989988 1.078227993 1.06766038 0.993494181 1.017106648 1.003627632 1.068679127 1.032010798 28869917 cysI Pseudomonas syringae pv. tomato str. DC3000 Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 1.132124848 1.054182832 1.073234772 1.062439289 1.026706243 1.046108816 0.991238048 1.018801039 1.040837005 1.028291544 1.039801459 1.045765846 1.052466038 1.025885449 1.027635042 1.03074102 1.052624176 1.044229888 365181213 catechol Sinorhizobium fredii HH103 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium fredii; 0.844984529 0.845318971 0.827275448 0.84035215 0.850603335 0.886516592 0.865068877 0.847573604 0.908776287 0.861026559 0.82179603 0.79724915 0.812343252 422313977 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.789965731 0.795028696 167350105 trze Caulobacter sp. K31 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 1.022771086 1.04232176 1.003237947 0.964036676 1.018904237 1.096171083 0.996110361 1.05681645 0.981259619 1.043050495 1.002785227 1.060629106 0.997288857 1.066343201 1.02257703 1.068620009 1.087503786 1.094013933 254948266 acetylglucosaminidase Dyadobacter fermentans DSM 18053 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Dyadobacter;species:Dyadobacter fermentans; 1.117093866 1.10660882 1.079159072 1.097917797 1.082618978 1.114184068 1.066137267 1.066673202 1.100777232 1.101368776 1.081230054 1.090449285 1.078509323 1.072947353 1.021120537 1.102547577 1.119058062 1.108924984 26986215 SoxB alpha proteobacterium HY-103 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 0.880024945 0.882330052 0.845682928 0.90371484 0.890496989 0.897658918 0.914970438 0.880448446 0.827267678 0.848192202 0.879518643 0.841388182 0.826656034 0.923934813 0.834276233 0.909159621 374416888 amyA Desulfosporosinus youngiae DSM 17734 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfosporosinus;species:Desulfosporosinus youngiae; 0.828957823 1.074202286 0.864400114 0.869876642 0.896281272 0.861475877 0.866817154 0.890615301 0.828147046 0.864815405 0.851514305 0.868716463 0.894894995 0.852247723 0.871088765 0.89417606 0.850008634 0.884994888 385867002 alkb uncultured bacterium Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria; 1.075842138 1.021693508 1.022581261 1.047558007 1.002897531 0.997816132 1.008344553 1.029933829 1.05897019 1.016305106 1.003215349 1.039857228 0.967874707 0.980983822 0.947466762 0.996730253 1.025019161 1.008221794 170781457 amyA Clavibacter michiganensis subsp. sepedonicus Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Clavibacter;species:Clavibacter michiganensis; 1.292109072 1.260254905 1.27213104 1.272975428 1.233399967 1.292379464 1.247077147 1.278088937 1.253915791 1.248395814 1.250483676 1.250382774 1.241690195 1.244336623 1.220171515 1.258769033 1.262790209 1.253331918 116043890 arra uncultured bacterium Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 1.092999382 1.118173544 0.992979883 1.059922536 1.082194324 1.126463777 1.069074733 1.041140359 1.044294952 1.098254646 1.073973324 1.079409028 1.072978397 1.065135116 1.043653009 1.098010549 1.088946452 1.078510133 391879604 amyA Parascardovia denticolens IPLA 20019 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Parascardovia;species:Parascardovia denticolens; 1.078292961 1.026741164 1.083825669 0.985245855 1.008132172 0.91270177 0.945488365 0.945436023 1.027585534 1.032339329 1.039783404 1.002799329 1.024762633 0.977482532 0.937718377 0.927667772 1.075592023 1.052632741 86607681 Sir Synechococcus sp. JA-2-3B'a(2-13) Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 0.865012567 0.799285048 0.798214772 0.814993331 0.813606777 0.856682187 379988395 dsrB uncultured bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.871687992 0.832110333 0.881921053 0.862014529 0.795560308 0.842582282 0.794460434 0.871277173 0.834971829 47182 merb Streptomyces lividans Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 1.17088387 1.127812218 1.110920383 1.137402823 1.105523327 1.173176994 1.105726772 1.144435549 1.117871333 1.105179261 1.101633613 1.124965982 1.108064361 1.102359517 1.110927005 1.109765667 1.187983781 1.138359992 71736676 ppk Pseudomonas syringae pv. phaseolicola 1448A Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas savastanoi; 1.019268306 1.010369122 1.039374315 1.034162746 0.994159255 1.026554867 0.998006877 0.999647285 1.021795738 1.000625339 0.998126594 1.006912375 0.97484722 0.987063624 0.989831669 0.99665486 1.005516602 1.006279286 54778259 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 0.937219494 0.909675294 0.936264453 0.965054833 0.862309602 0.851593931 0.853576443 0.890912088 0.933608308 0.897093538 0.904307245 0.918804254 0.860941978 0.885621902 0.834069247 0.882780953 0.940854666 0.888959779 94987316 fthfs Lawsonia intracellularis PHE/MN1-00 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Lawsonia;species:Lawsonia intracellularis; 0.869753921 0.834099258 0.873484615 0.867496194 0.951879679 0.929296429 0.91880036 0.902827183 0.881482106 0.942820294 0.938884332 0.908762979 0.911134456 0.892180514 0.85855957 0.871958186 0.846568183 0.863901759 157804759 APS_AprB Thiobacillus plumbophilus Sulfur adenylylsulfate reductase NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus; 1.073248397 1.105098663 1.034011142 1.067111084 1.061886525 1.111978043 1.036521173 1.078705101 1.106980836 1.053712045 1.106869508 1.059273218 1.051461988 1.040912336 1.015672122 1.035937629 1.08262259 1.119184172 300788751 amyA Amycolatopsis mediterranei U32 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 1.06854508 1.069623973 1.041143019 1.073454892 1.014859856 1.074752325 1.00725016 1.046539393 1.029713578 1.043357949 1.019337825 1.052864848 0.994240208 1.007547609 1.008579707 1.028224987 1.044745305 1.069753953 187711185 catechol_b Sphingomonas sp. B2-7 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 0.928432006 0.904774935 0.889683202 0.94297763 0.876916993 0.882812084 0.831404861 0.862223653 0.931778826 0.902518732 0.848341095 0.889532167 0.863248926 0.90429395 0.844610418 0.860992698 0.920201811 0.920706216 336392297 fthfs Lactobacillus coryniformis subsp. torquens KCTC 3535 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus coryniformis; 0.839619218 0.790757141 0.817240348 169266 ligninase Phanerochaete chrysosporium Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Corticiales;family:Corticiaceae;genus:Phanerochaete; 1.137780151 1.129257075 1.123277828 1.154341802 1.138405853 1.165492425 1.150538736 1.123925823 1.13083372 1.112008449 1.139019695 1.1294819 1.122355509 1.120120191 1.115245182 1.146211646 1.154843303 1.123512779 88779525 chitinase Reinekea sp. MED297 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Reinekea;species:Reinekea blandensis; 0.999906169 0.880123832 0.974452262 0.966612928 0.912149156 0.953462816 0.92660255 0.972714926 0.925613717 0.921136476 0.95857812 0.887086819 0.867328997 0.858952204 0.87145159 0.954148951 256377382 mhpa Actinosynnema mirum DSM 43827 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Actinosynnema;species:Actinosynnema mirum; 1.177970796 1.095829994 1.154551132 1.141151696 1.133885306 1.175787214 1.164178829 1.194711334 1.135418251 1.122227804 1.12841174 1.124129645 1.129058986 1.092876274 1.137984925 1.085595656 1.14054202 1.145241802 157369466 chitinase Serratia proteamaculans 568 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia proteamaculans; 0.911801546 0.88852444 0.957859009 0.933356928 0.894152296 0.95062933 0.913688574 0.892453745 0.958095744 0.879180794 0.89660184 0.878613146 0.961872398 0.897653502 0.914748827 0.929007721 359315305 amyA Gordonia polyisoprenivorans NBRC 16320 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia polyisoprenivorans; 0.841831662 0.84312447 0.817516998 0.835144275 0.831605133 0.80781259 0.838900195 0.816748135 0.813395117 0.83373429 0.850630334 0.834076099 367470355 chnb Patulibacter sp. I11 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Solirubrobacterales;family:Patulibacteraceae;genus:Patulibacter; 1.081853216 1.115346295 1.122212449 1.072663078 1.08232878 1.103287014 1.037466529 1.048051243 1.063020309 1.096321557 1.187549981 1.090556125 1.08864379 1.100181423 1.120174228 1.061600899 1.115815433 1.095133516 335333839 amie Helicobacter bizzozeronii CIII-1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Helicobacter;species:Helicobacter bizzozeronii; 0.96086229 0.93548862 0.987469357 1.01542825 0.93283346 0.971372489 0.971412741 0.997277863 0.978482968 1.005740004 0.939093193 0.9943104 0.918410757 0.955160326 0.922240281 0.93513152 0.970974722 0.9619966 338171159 tktA Cupriavidus necator N-1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 0.850308489 0.873277958 0.894998454 0.894556426 0.875576896 0.84684676 0.920750759 0.911744838 0.899330696 0.839090828 0.81250883 0.870651526 0.834862915 0.817308412 0.866266572 0.867729633 295103808 amyA Faecalibacterium prausnitzii SL3/3 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Faecalibacterium;species:Faecalibacterium prausnitzii; 1.220184741 1.246673773 1.227016313 1.247227904 1.25756707 1.286389147 1.236493644 1.217497349 1.200698157 1.246812645 1.234325711 1.222304894 1.252144486 1.224511238 1.228645664 1.240510896 1.253768643 1.224838113 365292956 ben_bcla Bradyrhizobium sp. ORS 375 virulence NA NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 1.162791707 1.1390637 1.086388104 1.1294308 1.101614662 1.133347682 1.116502831 1.140382919 1.120967441 1.112740371 1.105992624 1.11834491 1.09598233 1.108684333 1.094626262 1.107561473 1.149424924 1.145361061 356699038 amyA Clostridium hathewayi WAL-18680 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hathewayi; 0.896262475 0.911097591 0.905410914 0.925335468 0.897431748 0.870989467 0.913912288 0.857974307 0.917958679 0.923323802 0.920145012 0.832388374 0.813114066 0.915607826 0.900635615 70729553 arsc Pseudomonas fluorescens Pf-5 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 0.798615798 0.806249934 0.827751012 0.887213496 0.826021177 0.810222875 0.855175982 0.813311999 0.8483912 0.850926963 374434506 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.816199723 0.840465229 0.851700916 0.890984327 0.945910828 0.979562624 0.933672038 0.899630172 0.854339623 0.872367743 0.858925729 0.942136386 0.963909274 0.80847053 0.954571124 0.996813671 0.819473774 0.941445664 118591561 FBPase Stappia aggregata IAM 12614 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 1.034075915 1.01714657 1.045292257 1.017433886 1.03331295 1.042651296 1.026752433 1.050539161 1.032921919 1.035368843 1.026131901 1.034206396 1.004830502 0.981660882 0.977225805 0.980914146 1.056322995 1.037507066 373550803 linb Mycobacterium tusciae JS617 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tusciae; 1.236577148 1.20390945 1.181628942 1.201110753 1.197450915 1.222509308 1.189216899 1.192894989 1.188241497 1.16434724 1.198873114 1.242052041 1.181507269 1.183770523 1.188267291 1.200486296 1.225179592 1.197268107 133913193 hbh Saccharopolyspora erythraea NRRL 2338 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 1.254004067 1.25452561 1.227380414 1.246353913 1.230579481 1.251061488 1.216941208 1.219423875 1.20508902 1.200114306 1.222893058 1.249471353 1.223901337 1.197722584 1.194090704 1.231155944 1.243453056 1.226858665 254417808 amyA Brevundimonas sp. BAL3 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Brevundimonas; 0.97744649 0.99868032 0.922728452 0.940002623 0.944158857 0.961466082 0.950131346 0.961458002 0.961751022 0.949210734 0.983547745 0.945990642 0.973364997 0.931823637 0.951299073 0.958506376 0.96844928 1.00278138 299775070 pula Prevotella bryantii B14 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella bryantii; 0.926937793 0.899189217 0.939887948 0.930500525 0.93557269 0.906796987 0.968825797 0.955917377 0.916251389 0.89822208 0.91351474 0.919611347 0.913804515 0.884678073 0.937999744 0.899003092 0.872020636 0.902806366 154302760 tannase_Cdeg Botryotinia fuckeliana B05.10 Carbon Cycling Carbon degradation Tannins superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Botryotinia;species:Botryotinia fuckeliana; 1.5736587 1.520625094 1.522811319 1.545132532 1.515288681 1.554017202 1.515675815 1.552100507 1.52205605 1.50738447 1.509475161 1.534550206 1.496910016 1.5015019 1.514178648 1.515788346 1.514959704 1.486577969 374846254 cutinase Nocardia cyriacigeorgica GUH-2 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia cyriacigeorgica; 1.033259393 0.985447879 1.019150657 1.04612793 1.005606186 1.032205012 0.931643978 1.003342319 1.028549428 0.964749139 0.923443952 0.970062629 1.008112936 0.96572436 0.936624607 0.96349483 1.056859564 1.048669105 114767012 soxY Roseovarius sp. HTCC2601 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pelagibaca;species:Pelagibaca bermudensis; 0.789990985 0.82223807 390450040 amyA Nitratireductor aquibiodomus RA22 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Nitratireductor;species:Nitratireductor aquibiodomus; 1.026278521 1.015531491 0.998856252 1.041811245 0.988827807 1.001908474 1.003315113 1.029777053 1.070427946 0.966498926 0.987109076 0.990594007 0.936848599 0.946293757 0.924299576 0.916062771 0.993123526 1.010968464 238549552 chrr Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044 Metal Homeostasis Chromium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 0.790353125 0.794110838 0.807832886 0.856105967 333442362 PRK Methyloversatilis universalis FAM5 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Methyloversatilis;species:Methyloversatilis universalis; 0.979779013 1.05801553 0.972017223 1.005266409 1.008999444 1.046526057 0.954976735 0.960509726 0.989722303 0.942603543 0.978674117 0.972909912 0.887049928 0.966854907 0.928978793 0.941340743 1.007927664 1.034918373 317048076 xylj Pantoea sp. At-9b Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 1.125806431 1.08376072 1.124820571 1.131956397 1.114536826 1.105796017 1.102541667 1.140128541 1.127448011 1.102474412 1.103823531 1.126401368 1.076229723 1.04425062 1.071307328 1.058449257 1.122475595 1.087974148 329893946 TIM gamma proteobacterium IMCC3088 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 0.909228887 0.870061857 0.868313676 0.895427538 0.871683581 0.847545267 0.841128083 0.863582279 0.911086664 0.884375915 0.885114877 0.875690571 0.904107221 0.864279823 0.854732524 0.899156229 0.896382621 319804877 fthfs Sutterella wadsworthensis 3_1_45B Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Sutterellaceae;genus:Sutterella;species:Sutterella wadsworthensis; 0.814427504 0.822040945 0.825529015 0.845974655 0.847330008 0.870265075 0.818983938 0.779818653 0.819819344 0.84763393 336305562 RgaE Runella slithyformis DSM 19594 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Runella;species:Runella slithyformis; 1.084943341 1.111617057 1.038373639 1.108611609 1.077044883 1.099928784 1.042920634 1.039588574 1.069831641 1.101601582 1.096444582 1.110951338 1.078804848 1.081029716 1.064022328 1.077955983 1.039080127 1.096290168 311219837 rubisco Rhodomicrobium vannielii ATCC 17100 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Rhodomicrobium;species:Rhodomicrobium vannielii; 0.971778773 0.973130918 0.966261819 1.024384005 0.972755882 0.984849806 0.978244487 0.977471321 0.983836067 0.986538039 0.947022385 0.988753875 1.004612351 0.941557478 0.970691103 0.989416412 1.001891346 0.96497462 118171154 bphF1 Mycobacterium smegmatis str. MC2 155 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 0.856546014 0.911594675 0.874358355 0.857083271 0.840511828 0.947041106 0.806916431 0.861479911 0.838574265 0.857042689 0.845931086 0.901083366 0.873732633 0.852622373 0.904013658 224944138 arsc Corynebacterium matruchotii ATCC 33806 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium matruchotii; 1.005752136 1.000852456 0.979113339 0.999226863 1.015567506 0.970863643 0.985957011 1.009998017 1.002984055 0.959947642 0.99485038 1.014663802 0.954304979 0.959080068 0.929544987 0.963613324 0.994370797 0.98526653 345863416 mer endosymbiont of Tevnia jerichonana (vent Tica) Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;species:endosymbiont of Tevnia jerichonana; 1.062344333 1.015915053 0.978253535 1.054534382 0.984516851 0.977358089 0.985911848 0.98210551 1.035607297 0.982222433 1.008573267 1.040420709 0.955234168 0.925158478 0.912953598 0.972576918 1.01732871 0.983988715 403120729 bphF1 Alicyclobacillus hesperidum URH17-3-68 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Alicyclobacillus;species:Alicyclobacillus hesperidum; 0.983470343 1.080452133 0.963207815 1.024917748 0.977514058 1.028014336 0.941931605 0.945808406 0.948800565 1.038084759 1.006507278 1.009499843 0.988259638 1.011735396 0.852286611 0.985971745 1.004549512 1.059558044 111019985 pcpe Rhodococcus sp. RHA1 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 1.140439737 1.153883165 1.140019709 1.142325241 1.142863229 1.165886224 1.152754764 1.15804089 1.098877064 1.108048995 1.066397103 1.144012921 1.111455979 1.114175389 1.017087243 1.138625295 1.123069044 1.187216482 154240600 mcra uncultured euryarchaeote Carbon Cycling Methane Methanogenesis superkingdom:Archaea;phylum:Euryarchaeota; 0.773005966 0.828449147 94471361 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.868912673 0.944863451 0.891725703 0.872599203 0.90273934 0.958373372 0.826746483 0.857409379 0.870757518 0.940825908 0.898971405 0.903979379 0.871547484 0.927610476 0.886120537 0.899268471 0.909099286 0.927768152 17935051 ppk Agrobacterium tumefaciens str. C58 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 1.071275286 1.029890696 1.126705493 0.993214901 1.047822204 1.117045873 0.978062283 1.036721158 1.045490464 1.024023559 1.068390093 1.060327123 1.02684323 1.051900152 1.091583495 1.015982666 1.093630275 1.036934179 189337689 atzb Burkholderia multivorans ATCC 17616 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 0.960690687 0.934603815 0.87709587 0.969041973 0.869507719 0.921221202 0.886199207 0.95895901 0.939403404 0.857910412 0.89104198 0.882648385 0.902343559 0.897066064 0.917525474 0.979111037 0.926514614 13422062 xylanase Caulobacter crescentus CB15 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter vibrioides; 1.172675732 1.175955592 1.141702926 1.171964465 1.168527797 1.159336655 1.153618384 1.14015936 1.138868654 1.139014507 1.134837046 1.145851414 1.115812328 1.098817974 1.114577959 1.135895951 1.154571263 1.161105281 378597131 ppx Sutterella parvirubra YIT 11816 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Sutterellaceae;genus:Sutterella;species:Sutterella parvirubra; 0.825165413 0.840799951 0.822106 0.893320793 0.827971786 0.851705628 0.802980367 0.835592205 0.825439909 0.831419845 116061998 rd uncultured bacterium Organic Remediation Chlorinated solvents NA superkingdom:Bacteria; 1.069933939 1.043276385 1.040302033 1.059663837 0.988484055 1.02519904 1.012170617 1.066656742 1.049363971 1.008471496 1.027534761 1.04555047 1.005937187 1.01590828 1.028775646 1.030087275 1.053228236 1.02830145 389860881 amyA Thermogladius cellulolyticus 1633 Carbon Cycling Carbon degradation Starch superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Desulfurococcales;family:Desulfurococcaceae;genus:Thermogladius;species:Thermogladius cellulolyticus; 1.045986497 1.03159013 1.006806127 1.056118585 1.038031451 1.009918394 0.98304235 1.001314919 1.038733093 1.001042071 1.005668353 1.056698697 1.028098145 0.988918667 1.007009679 0.98344545 1.023846673 0.966183026 333984318 fccab Methylomonas methanica MC09 Sulfur Sulfide Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylomonas;species:Methylomonas methanica; 0.877632693 0.892128809 0.879335174 0.905702982 0.886219733 0.882829185 0.79871877 0.844329611 0.877625573 0.884911347 0.892373534 0.863740635 0.853277499 0.858429208 0.821807934 0.883052251 0.88876581 299743559 rgl Coprinopsis cinerea okayama7#130 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 0.867135311 0.92327856 0.867331577 0.862660436 0.853255114 0.902116324 0.840601763 0.883136296 0.849872257 0.940309836 0.84972434 0.87238325 0.803492612 0.862368573 0.861028343 0.922016644 0.932395838 148254220 soxY Bradyrhizobium sp. BTAi1 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 1.158127615 1.170067601 1.164498797 1.140185542 1.138830059 1.164710606 1.139200919 1.141359388 1.133741923 1.119886398 1.135584385 1.138965192 1.127549066 1.098775273 1.068708144 1.118247401 1.174771726 1.149141263 296813107 nitrate_reductase Arthroderma otae CBS 113480 Nitrogen N Assimilation NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Arthrodermataceae;genus:Arthroderma;species:Arthroderma otae; 0.868805845 0.79939402 379044621 arylest Frateuria aurantia DSM 6220 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Frateuria;species:Frateuria aurantia; 1.07630521 1.005983195 1.048754626 1.086716227 1.044757864 1.072448593 1.075818328 1.065332539 1.071347191 1.021012428 1.07583453 1.057075472 1.010436753 1.039396009 0.976294869 1.002818395 1.080468516 1.005324169 190894804 amyA Rhizobium etli CIAT 652 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 0.760713821 0.813758473 326331080 ara Nocardioidaceae bacterium Broad-1 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae; 1.245031725 1.231217976 1.228349473 1.214522976 1.187846546 1.248903788 1.180175646 1.203476299 1.200295358 1.241888603 1.19682214 1.228331629 1.177803635 1.210774589 1.168217885 1.204582883 1.245721485 1.23862903 259559730 amyA Mycobacterium sp. DSM 3803 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 1.071331805 1.05238708 1.033238808 1.042895409 1.059013456 1.086130838 1.019847422 1.030930922 1.068070518 1.036464672 1.05142391 1.056191507 1.049914501 0.993549742 1.023306779 1.047907291 1.122177463 1.069993714 374986438 rgl Streptomyces bingchenggensis BCW-1 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces bingchenggensis; 1.140888906 1.150304584 1.135274354 1.16568591 1.122657257 1.160137633 1.129002481 1.093075328 1.153605353 1.112224764 1.14595346 1.107765391 1.083890747 1.096364992 1.077008845 1.076102638 1.175213563 1.152876305 13474797 tktA Mesorhizobium loti MAFF303099 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 0.986905937 1.016914583 0.943131163 0.972125486 0.966012995 0.9937407 0.955277024 0.959824204 0.951686009 1.009426863 0.98726512 1.000830046 0.987573286 0.967547444 0.964558498 0.980756239 0.982556711 1.02585842 148256352 b_lactamase Bradyrhizobium sp. BTAi1 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 1.372478999 1.320932762 1.330158768 1.340150553 1.279557442 1.347936756 1.280596296 1.328101786 1.312433697 1.307219896 1.29592754 1.327449937 1.287686821 1.292059207 1.282317924 1.322358121 1.342437287 1.307947708 56677514 GAPDH_Calvin Ruegeria pomeroyi DSS-3 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 0.84770894 0.818223402 0.836540352 0.86596951 0.850616196 0.82477872 0.864803946 0.868323053 0.806578407 0.815233969 0.790558065 0.815145482 0.886361682 407784179 b_lactamase Oceanibaculum indicum P24 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Oceanibaculum;species:Oceanibaculum indicum; 1.357669943 1.309217098 1.328721952 1.321678962 1.278794625 1.329478529 1.271047354 1.293045867 1.313430498 1.307713696 1.312904749 1.328717573 1.280552441 1.282984673 1.264716177 1.313118564 1.334884143 1.315269881 338232898 chnd Bradyrhizobiaceae bacterium SG-6C Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae; 1.031454167 1.049198459 0.998303424 0.992794224 0.985960383 1.024849319 0.999280703 1.024975096 1.024154653 1.021861827 1.004083864 1.015869482 0.998747348 0.977371154 0.982212884 0.994551375 1.021129558 1.031675628 356687001 chitinase Aeromonas salmonicida subsp. salmonicida 01-B526 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas salmonicida; 0.87775525 0.839515841 0.902366292 0.83576536 0.832909167 0.875478673 0.949296915 0.885988573 0.843641237 0.873903458 0.881586417 0.848985301 341937521 amyA Xanthomonas campestris pv. raphani 756C Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas campestris; 1.241893486 1.197851708 1.230175091 1.274623795 1.258804062 1.206057039 1.207242965 1.239497444 1.214793407 1.182913371 1.219862044 1.243446007 1.174620636 1.157342838 1.252932051 1.202498662 1.222077417 1.151086351 118468672 cdh Mycobacterium smegmatis str. MC2 155 Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 0.761628487 0.895780581 0.827228494 0.804223673 0.865901137 0.831474933 0.778271121 1.000703953 0.831193179 0.829539823 0.792282928 0.95034049 328544739 vdh Polymorphum gilvum SL003B-26A1 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;species:Polymorphum gilvum; 0.875202827 0.965401212 0.933553118 0.949308572 1.02292904 0.997471624 0.997186018 0.999733111 0.930646009 1.005375558 1.123053142 0.997253601 0.941007719 0.957558591 0.887404244 1.005068731 0.925769105 0.95837916 118019751 bphF1 Serratia proteamaculans 568 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia proteamaculans; 0.87385419 0.87071403 0.81017713 0.906673178 0.848421947 0.894122253 0.827589131 0.83179185 0.817935535 0.8386169 0.817264935 0.83005411 0.819271423 0.812497933 0.831080252 0.886036781 407376873 bphF1 Mycobacterium hassiacum DSM 44199 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium hassiacum; 1.004094752 1.047678317 0.9579342 0.990434972 0.988598571 1.021516433 0.960308939 0.985849688 0.965774761 0.952191875 0.984403468 1.026067196 0.949612473 0.96078988 0.948017918 0.98861034 1.011452803 0.971017429 187924111 FBP_aldolase Burkholderia phytofirmans PsJN Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 1.071071366 1.071379195 1.049020687 1.045867888 1.066588693 1.064993883 1.036690599 1.031292794 1.041506434 1.06719864 1.058476959 1.055713796 1.05543635 1.069518916 0.984182965 1.05074834 1.071425292 1.073884806 42627730 catb Arthrobacter sp. BA-5-17 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 1.492691575 1.443605115 1.424117966 1.447152433 1.42770018 1.440904872 1.412358961 1.431082719 1.415598638 1.408152716 1.41500151 1.436923216 1.409531624 1.396828866 1.41541948 1.418686124 1.434424193 1.406720811 86607525 urec Synechococcus sp. JA-2-3B'a(2-13) Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 1.278422763 1.235678346 1.21653036 1.223584619 1.212253927 1.222272952 1.188538 1.224262913 1.204696068 1.198796495 1.215630262 1.223145492 1.195096356 1.188377965 1.200028393 1.210695102 1.216722962 1.215468829 71383794 nasa uncultured bacterium Nitrogen Assimilatory N reduction NA superkingdom:Bacteria; 0.976788766 0.966604147 0.973854349 0.977139679 0.98304802 1.006585125 0.958428975 0.966714441 0.976819025 0.966368083 0.874841063 0.915829307 0.951392747 0.918749538 0.877548208 0.922804896 1.005802396 1.010551102 326544894 proO Marinomonas mediterranea MMB-1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Marinomonas;species:Marinomonas mediterranea; 0.887086725 0.805254973 0.867129258 0.951683816 0.871079638 0.883632586 0.904946035 0.880264598 0.880737898 0.833188428 0.835250502 0.878863347 0.82695921 0.787605477 0.875288693 0.884693448 0.860420942 289557759 arsc Micrococcus luteus SK58 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Micrococcus;species:Micrococcus luteus; 0.945844576 0.931886975 0.924467674 0.972333439 0.917769596 0.94453557 0.898119953 0.95032174 0.964245254 0.905522631 0.915329106 0.937755836 0.882185931 0.942880416 0.950009705 0.902802279 0.952071782 0.949184451 321166448 amyA Rahnella sp. Y9602 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Rahnella; 0.949642658 1.002574403 1.011700352 0.894661187 0.948985004 0.951920972 0.938180511 0.940767435 0.93166351 0.994020698 0.977056551 0.941152495 0.919092393 0.916548521 0.939358052 0.899824678 0.957805063 0.978279373 309776613 amyA Erysipelotrichaceae bacterium 3_1_53 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Erysipelotrichia;order:Erysipelotrichales;family:Erysipelotrichaceae; 0.834550049 0.785187939 0.860711181 0.853206556 0.849170529 0.806777138 0.853292315 0.85951712 0.869788693 0.871952865 0.850105573 0.803887732 0.915711264 0.896541916 325107588 arsc Planctomyces brasiliensis DSM 5305 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Planctomyces;species:Planctomyces brasiliensis; 1.006717802 0.924720708 0.994966677 0.958367071 0.90162127 0.863470514 0.847882026 0.970106535 0.914321034 0.968015381 0.870150806 0.947893881 0.932824504 0.828718008 0.99604913 0.917487387 332517279 xylanase Ruminococcaceae bacterium D16 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae; 1.122094727 1.077520685 1.078226745 1.099584861 1.065918012 1.112764153 1.073746956 1.098131804 1.06677081 1.056618929 1.073097835 1.082365317 1.054437759 1.062688186 1.048729638 1.097502666 1.098167345 1.07747424 161392212 pcag Roseobacter litoralis Och 149 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter litoralis; 0.949012268 0.935129921 0.94111709 0.988429511 0.924363371 0.93150028 0.954445073 0.975739845 0.946713698 0.935262622 0.919977433 0.947009069 0.935469986 0.904744983 0.875663081 0.902319028 0.95175701 0.933837153 83026030 alkb uncultured bacterium Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria; 0.992636766 0.970685719 0.988790458 1.004499202 1.021864107 1.056708036 1.006990679 1.015366413 0.927914797 1.026525699 0.913384703 1.018410708 0.992814178 1.038916487 0.965564954 1.009076761 1.032871832 0.948543192 155964467 nasa uncultured marine bacterium Nitrogen Assimilatory N reduction NA superkingdom:Bacteria; 0.883050059 0.858946609 0.859747455 0.825680011 0.820481578 0.852762207 0.841709964 76578825 cysI Burkholderia pseudomallei 1710b Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia pseudomallei; 1.016598072 0.993388281 0.985600803 0.99875392 0.968346685 0.983626158 0.992092921 0.966054131 0.995432617 0.982126579 0.982744257 0.978487721 0.956246366 0.936386258 0.948094335 0.931740777 0.986549683 0.978709747 82735456 vana Pseudomonas putida F1 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 1.02571151 1.027657332 1.02542652 1.018223731 1.03988267 1.043556273 1.00531603 1.004696163 1.038567615 1.022681034 1.05688194 1.048141078 1.01835633 1.03133267 1.0505984 0.996564749 1.007550464 1.070152343 291369137 narg Haloferax volcanii DS2 Nitrogen Denitrification NA superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloferax;species:Haloferax volcanii; 1.540988761 1.482443892 1.483167652 1.485000475 1.469738785 1.508103041 1.486099414 1.497984558 1.465975538 1.448572645 1.477000065 1.48938384 1.451175748 1.455439273 1.47298684 1.488455113 1.486547723 1.449451368 268311646 poba Thermomonospora curvata DSM 43183 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Thermomonosporaceae;genus:Thermomonospora;species:Thermomonospora curvata; 1.387211867 1.404055838 1.399383545 1.390194941 1.393272729 1.409979186 1.366096767 1.382635474 1.366248338 1.357645407 1.389468164 1.40173848 1.374893463 1.342634342 1.362228078 1.365103209 1.393128961 1.359769611 332042103 urec Hylemonella gracilis ATCC 19624 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Hylemonella;species:Hylemonella gracilis; 0.935882594 0.975935649 0.900323977 0.962752076 0.90113103 0.965610611 0.897544232 0.962949118 0.942375972 0.953511856 0.916108087 0.947392511 0.877127499 0.915302888 0.846379863 0.905531212 0.94267207 1.000510483 77378421 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.961709082 0.928671707 0.862475112 0.959897061 0.836299603 0.943467169 0.859804087 0.887005085 0.905049111 0.922022789 0.824140921 0.91134949 0.836430002 0.827435399 0.86535818 0.943672288 0.912701414 386331009 cellobiase Serratia sp. AS13 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia; 1.085904333 1.08418089 1.080606384 1.123871111 1.035111486 1.042847704 1.08045917 1.042408176 1.081189679 1.072193756 1.057052451 1.053894539 1.01777413 1.02803428 0.991474334 1.055671669 1.091648116 1.050828141 365792064 dsra uncultured bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.0093258 0.993627447 0.925666556 0.960507823 0.916122047 0.992268043 0.891259159 0.918227736 0.950934959 0.963040998 0.964990885 0.958637275 0.92448381 0.946582755 0.86082166 0.959544232 1.025335888 0.956662469 160917827 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.922062895 0.943765048 0.928640161 0.937063979 0.918372974 0.910783025 0.894825979 0.879749442 0.926411955 0.937604915 0.91775211 0.905842872 0.856838633 0.858511282 0.867837529 0.856812375 0.953518014 0.931369414 212171518 alkb uncultured bacterium Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria; 0.972295612 0.92780769 0.97930555 0.974922108 0.981051668 1.039966759 0.969750658 0.987616078 0.984254516 0.98534652 0.97256197 0.969332232 0.933641048 0.894447678 0.91361812 0.859017037 0.97315009 0.958956013 227329114 nrfa Pectobacterium carotovorum subsp. carotovorum WPP14 Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium carotovorum; 0.956741675 0.858369199 0.930232147 0.967514348 0.896130372 0.910232306 0.909573841 0.963062167 0.955277227 0.915928401 0.897810089 0.890265135 0.834832287 0.839014026 0.847441726 0.840845435 0.925189014 0.931901503 333748523 urec Desulfotomaculum carboxydivorans CO-1-SRB Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum carboxydivorans; 0.949283726 0.87043348 0.887704483 0.935345292 0.909037891 0.922543924 0.872826096 0.934587945 0.933996598 0.892766688 0.898591883 0.937705984 0.902793779 1.014164162 0.899889659 0.906287587 0.936393272 0.903988264 260414511 amyA Synechococcus sp. WH 8109 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 0.847453985 0.882334232 0.875854203 0.868401919 0.856488135 0.829454475 0.872995257 0.858342658 259476083 phospholipase_C_fungi Neurospora crassa Carbon Cycling Carbon degradation Phospholipids superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Neurospora; 1.003482449 0.935441417 0.95187586 1.004039396 0.904809022 0.966898551 0.951241287 0.961474896 0.983007583 0.970639436 0.940928844 0.96713688 0.929541392 0.931177603 0.907821099 0.940317192 0.987479017 0.951538772 111919316 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.051715511 1.02427936 0.973861744 1.004463587 0.983999761 1.000444185 0.951094911 0.957357541 1.022981582 0.973146034 0.979986313 0.971680878 0.92551666 0.973386052 0.91165835 0.942494331 1.01400666 1.038806325 325110605 CsoS1_CcmK Planctomyces brasiliensis DSM 5305 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Planctomyces;species:Planctomyces brasiliensis; 0.881919044 0.952492933 0.919983576 0.923007124 0.925564898 0.962816457 0.896615873 0.913022206 0.902055857 0.983910369 0.892060423 0.941976218 0.900913502 0.897853116 0.869601566 0.917612501 0.874231739 0.940311117 260221578 cellobiase Curvibacter putative symbiont of Hydra magnipapillata Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Curvibacter; 1.05580583 1.007083442 1.031947849 1.061939291 0.991429727 1.009059754 0.976780601 1.012380102 1.054594295 0.981297125 0.996065757 1.002559636 0.965428402 0.970297666 0.965605945 0.988196381 1.065499821 0.994254549 359292012 cutinase uncultured bacterium Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria; 0.999860546 0.982927924 0.979755598 0.981594981 0.960859784 1.008684909 0.943542805 0.958875327 0.962474007 0.980557147 0.939743244 0.969493765 0.932613093 0.994917784 0.923789209 0.971348668 0.955101226 1.000394985 81176591 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.005711182 1.001747239 0.955517141 0.985755017 0.94914267 1.001800146 0.999908462 1.00878315 0.978113967 1.001039482 0.910799796 0.942884961 0.957751489 0.965955029 0.888733809 0.977689677 1.008112425 1.039842995 62129081 cysI Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67 Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 0.971872488 0.980389546 0.963285338 0.992362158 0.948725307 0.944356573 0.947942036 0.959033406 0.970720668 0.949627649 0.941597526 0.970269875 0.960420702 0.948152094 0.944933885 0.959510943 0.99967331 0.947042725 256681303 xylj Pseudomonas aeruginosa Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 1.124723397 1.108338608 1.178838798 1.115077926 1.196961787 1.229658978 1.102441383 1.120892957 1.147412065 1.126090617 1.164401439 1.187947182 1.195894452 1.14648058 1.282149447 1.223936092 1.235369013 1.177293961 343804626 CsoS2 Marichromatium purpuratum 984 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Marichromatium;species:Marichromatium purpuratum; 0.825103195 0.89130952 0.85923302 0.907444351 0.846928214 0.806512868 0.863171192 0.811445911 0.875475559 0.87735056 0.847979666 0.838588686 0.868614227 0.889519074 115376666 alkh Stigmatella aurantiaca DW4/3-1 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 0.896253871 0.949465134 1.09549971 0.89535478 0.840493616 0.871279696 0.890423684 0.846969204 0.876083302 0.912925147 0.899384735 0.904369503 0.928993021 0.903549838 0.851621803 0.937416293 0.927442538 0.899024226 297559906 amyA Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Nocardiopsis;species:Nocardiopsis dassonvillei; 0.981816643 0.954173031 0.957429853 0.946993625 0.862436802 0.962036892 0.910505824 0.952936877 0.927673617 0.955418221 0.90438741 0.943954118 0.900638776 0.909267487 0.827682764 0.91744859 0.918745256 0.972494092 90954601 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.947395307 1.007248472 0.977949112 0.945534773 1.009382053 1.023160085 0.957071281 0.928471169 0.985585757 0.953155497 0.981597968 0.948056261 0.957523568 0.907597619 0.977200389 0.942424308 0.986228314 219858510 amyA Arthrobacter chlorophenolicus A6 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 0.771037652 0.796952551 0.818891197 0.815349901 0.795637717 0.83463513 364566812 CsoS1_CcmK Yokenella regensburgei ATCC 43003 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yokenella;species:Yokenella regensburgei; 1.010190284 1.05931637 0.974297431 1.010506412 1.010539728 1.03732976 0.98332812 0.98642236 1.012031656 1.0412877 1.029479723 1.03772775 1.037387031 1.001385633 1.032675606 1.007883349 0.989156084 1.031358645 291196998 exoglucanase uncultured fungus Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi; 0.946348103 0.877343526 0.893965552 0.926461745 0.864091332 0.960282615 0.899192333 0.885123168 0.934117679 0.933795738 0.941506272 0.909667673 0.894791517 0.920454518 0.880935452 0.901075147 0.958251003 0.925991486 327370187 TIM Burkholderia gladioli BSR3 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia gladioli; 1.266814588 1.216633622 1.211619083 1.224435134 1.203466456 1.214708594 1.178264946 1.219439692 1.222977063 1.190978972 1.223166296 1.227716126 1.183349891 1.162191846 1.146305542 1.17933605 1.23517891 1.193558927 222055138 linb Geobacter sp. FRC-32 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 1.147099895 1.109539162 1.122871881 1.100047042 1.140277741 1.203999104 1.153680031 1.104725292 1.083190514 1.123135506 1.129784924 1.110242806 1.142577007 1.113176694 1.124521661 1.094359305 1.163655104 1.116257475 311285518 xyla Pseudomonas fluorescens WH6 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 1.037388882 1.059250338 1.049466021 1.014573469 1.003394712 1.039423566 0.990174734 0.995380052 1.003995417 0.98933129 0.994184327 1.002306819 0.997657549 1.023101835 1.06247226 0.998835638 1.059909033 1.066231226 238488699 ara Aspergillus flavus NRRL3357 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus flavus; 1.056475244 1.009470695 1.012120423 1.033225048 1.000666406 1.026884011 0.969167375 1.104917607 1.017135454 1.006934044 0.998025152 1.02065761 0.992374538 0.996019067 0.973740235 1.005322661 1.051975863 1.026030506 318099790 mer mine drainage metagenome Metal Homeostasis Mercury Detoxification 0.831834114 0.846891124 0.84967228 0.785607524 0.820728577 0.824777825 0.840300035 0.832450478 306488361 nirs uncultured organism Nitrogen Denitrification NA 1.034126176 1.059730504 1.008982419 1.041667104 1.024758391 0.980545812 1.004100213 1.080894733 1.022963518 0.996824421 1.006004856 1.037084724 1.00224831 0.95904336 1.00187422 1.028788273 1.023314103 1.00386626 301114401 EF1a_Stramenopiles Phytophthora infestans T30-4 Other Phylogenetic NA superkingdom:Eukaryota;order:Peronosporales;genus:Phytophthora;species:Phytophthora infestans; 0.888865869 0.883791392 0.827916556 0.850197171 0.867123501 0.840592805 0.806168587 0.857094683 0.92445503 328885384 chitinase Streptomyces venezuelae ATCC 10712 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces venezuelae; 0.929622451 0.858396618 0.924022055 0.871805401 0.909474188 0.885250111 0.906802501 0.866609684 0.904479474 0.901025274 0.902011662 0.922939554 0.91300074 0.867358823 0.948001997 0.860803156 0.9411301 302542380 pectinase (pectate_lyase) Streptomyces hygroscopicus ATCC 53653 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces himastatinicus; 0.970423631 1.008457788 1.003973335 0.970669561 0.938006737 1.023207446 0.900188759 0.980275439 0.967720324 0.994921902 0.937033104 0.96151752 0.917430867 1.012670863 0.943267022 0.976729612 1.021603089 1.026087393 73535201 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.917598759 0.868022617 0.900677638 0.915509222 0.852332438 0.873146214 0.880681832 0.913574622 0.939040189 0.860822059 0.833757383 0.880990356 0.864005628 0.847057894 0.979102337 0.927169726 0.847341352 258511920 ppx Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Alicyclobacillus;species:Alicyclobacillus acidocaldarius; 0.832576487 0.816447931 0.847019428 0.831109994 0.845215396 0.850794274 0.801946487 0.826862328 0.862779513 0.862403557 32307905 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.86408572 0.88494661 0.908404323 0.899777671 0.907838043 0.896170085 1.101877851 0.802910544 0.868642481 0.974532857 0.940986373 0.892484994 0.902918617 0.887117234 0.872119257 0.914921475 0.940958538 0.936701762 357021843 amyA Mycobacterium thermoresistibile ATCC 19527 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium thermoresistibile; 0.904792668 0.910719286 0.963551192 0.968359091 1.018301565 0.892311158 0.89826306 0.883536138 0.968564341 0.904552862 0.88077066 0.971473419 0.91890927 0.89378954 0.871781792 0.892060645 0.932493822 0.888731438 163794005 soxY alpha proteobacterium BAL199 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 0.880145982 0.85881752 0.869470655 0.854130251 0.791336782 0.834648019 0.869242681 0.887447415 0.874854051 0.900700971 0.837009938 0.799718733 0.837774857 0.880221665 0.802403377 0.868107443 0.929054454 108756993 exochitinase Myxococcus xanthus DK 1622 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus xanthus; 0.817236709 0.816505983 336103340 linb Cellvibrio] gilvus ATCC 13127 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas;species:[Cellvibrio] gilvus; 1.008926493 1.027772708 0.942330207 0.992183498 1.02824954 1.019732892 0.999353754 0.965876475 0.96736661 1.037559577 0.969465535 0.977795751 0.977461644 0.961200259 0.862638398 0.97513399 1.006438425 1.04345112 344201210 CsoSCA Acidithiobacillus ferrivorans SS3 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus ferrivorans; 0.907490159 0.915447691 0.933541739 0.923939897 0.891073261 0.909734723 0.926190695 0.917100353 0.92616624 0.897095862 0.907017222 0.897314881 0.814556441 0.856594596 0.842753187 0.890047075 0.965260584 187718435 tktA Burkholderia phytofirmans PsJN Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 0.882551288 0.984908242 0.977878819 0.948606764 0.92464148 0.923863103 0.903762196 0.860385879 0.854868199 0.961124515 0.965412702 0.953667838 0.956749833 0.894123713 0.970251112 0.965465804 0.900985897 0.860310205 334901680 dsra Thermodesulfobacterium sp. OPB45 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Thermodesulfobacteria;class:Thermodesulfobacteria;order:Thermodesulfobacteriales;family:Thermodesulfobacteriaceae;genus:Thermodesulfobacterium;species:Thermodesulfobacterium geofontis; 0.88850875 0.864106386 0.860169998 0.892914721 0.946527484 0.816782668 0.860466237 0.930529398 0.888511901 0.823016954 0.804344044 0.879356608 0.851202006 0.833807957 0.889577471 0.918359652 295690109 rgl Caulobacter segnis ATCC 21756 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter segnis; 1.159623483 1.114515966 1.179045916 1.167642899 1.154780915 1.194940963 1.174178526 1.155506768 1.157181925 1.150990486 1.171104905 1.147712938 1.1481945 1.129099076 1.111982586 1.133205071 1.178254372 1.173409488 115361287 oxdb Burkholderia cepacia AMMD Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ambifaria; 0.888561941 0.918407422 0.856888621 0.926673614 0.870586828 0.856610652 0.884631523 0.849435444 0.889310588 0.904090807 0.904751465 0.891275599 0.895441544 0.8717864 0.882888457 0.877208334 0.930361656 0.88700729 197626495 TIM Cyanobium sp. PCC 7001 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanobium; 1.187522989 1.141916716 1.148754989 1.20078299 1.140386808 1.186530902 1.194939625 1.196558372 1.157488401 1.128780097 1.122639605 1.163163538 1.109053475 1.090530309 1.111979823 1.133015606 1.1913885 1.16777961 211957070 nitrilase Pseudovibrio sp. JE062 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 1.106096893 1.115063502 1.12236936 1.125826742 1.098214704 1.113122269 1.100046449 1.101098249 1.104127916 1.121364434 1.095619768 1.074540663 1.083894513 1.089753667 1.051293315 1.056815529 1.090753857 1.107196483 114537966 SoxC Fulvimarina pelagi HTCC2506 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Fulvimarina;species:Fulvimarina pelagi; 0.885742364 0.898001022 0.900406785 0.897725405 0.921674547 0.893171202 0.887661195 0.916618572 0.898109333 0.874726003 0.922653545 0.860123632 0.872068421 0.915446897 206677412 tktA Rhodobacteraceae bacterium HTCC2083 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 1.026090826 0.950795666 0.946470035 0.952527119 0.96448767 0.941969779 0.940396921 0.88225451 0.955769093 0.937622135 0.92376816 0.936733276 0.997061826 0.969760946 0.932465149 0.95806613 0.98889857 0.918767053 302589000 arsm Synechocystis sp. PCC 6803 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechocystis; 0.850662574 0.8184959 0.859948793 0.9010039 0.782918323 0.809070855 0.789948709 0.860092881 0.872237549 0.804819943 0.869415588 0.874668551 0.861004621 0.84555098 14719379 chnd Brevibacterium sp. HCU Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Brevibacteriaceae;genus:Brevibacterium; 1.185461262 1.062038547 1.045547604 1.07812754 1.064607228 1.076163393 1.09314044 1.011089241 1.035968668 1.035385506 1.060339909 1.056830599 1.018019111 0.993503325 0.940972433 1.00294505 1.077426005 1.073409848 405376355 pcpe Rhizobium sp. CF142 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 0.855090123 0.893778026 0.869615993 0.86283155 0.858155521 0.891452231 0.792370432 0.815514535 0.809279601 0.872008989 0.882573188 158333828 pgk Acaryochloris marina MBIC11017 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Acaryochloris;species:Acaryochloris marina; 0.78817919 0.833712199 94471305 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.819688463 0.875549874 0.803641477 0.810603788 0.850515351 0.856485153 0.785213583 0.85483247 0.851686771 0.861790593 319413891 phenol_oxidase uncultured bacterium Carbon Cycling Carbon degradation Lignin superkingdom:Bacteria; 1.021052806 0.995892176 1.008648923 1.01585347 1.025806104 1.036486868 1.008864757 1.02784111 1.013219259 1.005429677 1.029906578 1.034229766 0.992946202 0.955324775 0.991140857 0.956739967 1.012851494 0.993827893 374565717 fthfs Megamonas funiformis YIT 11815 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Megamonas;species:Megamonas funiformis; 0.858699501 0.861598928 0.848957565 0.880424675 0.855576097 0.871596881 0.870772012 0.890805573 0.804983479 0.841166137 0.849261556 0.833272915 0.834973775 83724530 nasa Ralstonia solanacearum UW551 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 1.120797494 1.147822506 1.089093861 1.119007147 1.049660819 1.158098864 1.085264323 1.107574846 1.087129861 1.102632678 1.041225848 1.093074506 1.003023425 1.048577575 0.940779307 1.022045071 1.108085343 1.098928696 206678706 TIM Rhodobacteraceae bacterium HTCC2083 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 0.894840655 0.909086662 0.827464857 0.904713542 0.831612282 0.88751591 0.814374862 0.866812887 0.907748112 0.867902451 0.803322665 0.808229893 0.782416998 0.864392055 0.898359905 0.911599596 94311912 tktA Cupriavidus metallidurans CH34 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 1.050033002 1.0302066 1.032512387 1.010547944 1.059145059 1.032127171 1.000165773 0.992922419 1.002319059 0.994415239 1.020557649 1.011143945 0.996541512 0.969521445 0.976861647 1.017619413 1.036530734 1.037490207 292485874 nirk Rhodanobacter sp. 2APBS1 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Rhodanobacter; 0.97050476 0.977444923 0.949578215 0.94668987 0.949135964 0.946720027 0.900139054 1.007290023 0.975661302 0.91954076 0.923067925 0.940884865 0.931970204 0.938846502 0.898771657 0.928575929 0.970951842 0.971145599 169849722 Sir Coprinopsis cinerea okayama7#130 Sulfur sulfite reduction NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 0.876391949 0.918635365 0.849024595 0.968302212 0.896250582 0.922625071 0.872598778 0.885615547 0.910422939 0.97439416 0.882517463 0.961559786 0.878545139 0.889336494 0.859339572 0.92105391 0.919946657 0.909100137 19774218 dsrB Desulfovibrio aespoeensis Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 0.938931696 0.886286122 0.898320783 0.959339379 0.909420008 0.916126607 0.868442623 0.917765054 0.935363581 0.896949371 0.917199239 0.903928495 0.866720106 0.86976613 0.856358072 0.869949168 0.955408974 0.898774482 154508610 amyA Actinomyces odontolyticus ATCC 17982 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces odontolyticus; 1.042300081 1.069486067 1.018051264 1.057926975 1.008180634 1.069014186 0.971411529 1.00831366 1.016843663 1.013041303 0.970003779 1.019343315 1.001518595 0.999007031 0.9247446 1.017160776 1.065644577 1.084826044 296264345 GAPDH_Calvin Roseomonas cervicalis ATCC 49957 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Roseomonas;species:Roseomonas cervicalis; 0.900290375 0.9249644 0.832432822 0.890699578 0.842344684 0.893081162 0.908327167 0.88334768 0.865281227 0.861838008 0.846463324 0.826254257 0.853606757 0.912750036 62512284 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.209701088 1.191540006 1.201697296 1.233900712 1.215203829 1.201702801 1.212849996 1.252745656 1.191090467 1.187733521 1.205552075 1.22189709 1.205151943 1.160866626 1.254535197 1.188828113 1.188578222 1.187436084 37548698 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 1.003578236 0.986260972 0.985457015 0.98453103 0.990748085 1.016174322 0.981380549 0.960157832 0.978794459 0.990182617 0.957240601 0.982613403 0.937530537 0.96391898 0.922835621 0.914321756 0.984347507 1.007940914 209401606 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.826329917 0.848004123 0.927000119 0.850984341 0.839951859 0.83839781 0.822484413 0.821608524 0.836300243 0.872061298 330469188 terc Verrucosispora maris AB-18-032 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Verrucosispora;species:Verrucosispora maris; 0.822851451 0.795677955 0.82035914 0.842039236 0.851780569 0.836859623 119116114 bphc uncultured bacterium Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria; 1.068616123 1.078909851 1.072691542 1.094843689 1.089371122 1.076391353 1.087355234 1.085883639 1.055663591 1.079933269 1.058297869 1.092637027 1.083409688 1.050463986 1.063193695 1.066072372 1.080741511 1.072517545 60475988 rubisco uncultured bacterium Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria; 0.832517023 0.81999563 0.810386811 0.809243557 0.825951888 0.811466007 0.867325904 0.798785886 0.823027709 0.827993807 218171083 CsoS1_CcmK Cyanothece sp. PCC 7424 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 0.873057218 0.812308919 0.844008687 0.881520332 0.883149107 0.830738152 0.857142962 0.886438355 0.855035437 0.862781562 0.833578687 0.870671402 0.807217964 0.848447432 0.834415287 0.847594224 0.840211376 0.843552665 363716263 tktA Acetobacteraceae bacterium AT-5844 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae; 1.093535772 1.150531009 1.060647918 1.062152343 1.041895253 1.079769534 1.04436972 1.040686141 1.014183742 1.060881921 1.067128826 1.066154049 1.062452301 1.032865371 1.033000549 1.063041816 1.070748401 1.07839562 209487038 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.789886534 0.82464338 0.823952369 0.841179225 146195928 atzd Bradyrhizobium sp. ORS278 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 1.076585941 1.100719235 1.067078225 1.107382472 1.064081161 1.088065522 1.036574322 1.054688983 1.065535594 1.065907441 1.039780175 1.078814745 1.048380478 1.042310907 1.045325327 1.044710787 1.098477942 1.109841304 104782200 bend Pseudomonas entomophila L48 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas entomophila; 1.145683419 1.139482468 1.066057658 1.105644969 1.070402972 1.11732306 1.028639994 1.037900018 1.092800769 1.077539024 1.112211802 1.084641256 1.060512282 1.052252352 0.995996072 1.04603841 1.094458072 1.073687702 110679773 FBPase Roseobacter denitrificans OCh 114 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter denitrificans; 1.116632372 1.094788828 1.096919314 1.095559888 1.109450751 1.135568821 1.105905427 1.128125922 1.070497427 1.116529165 1.124904173 1.087403286 1.096751488 1.082578808 1.045297053 1.059896472 1.123021077 1.089218607 90903283 aoxb uncultured bacterium Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 1.04960806 1.017061143 1.065535282 0.985484007 1.031585613 1.059627079 1.01059684 1.036074143 0.971860041 1.026413131 1.014620118 0.982467696 1.021756164 1.022158712 1.037065027 1.008960863 1.017246423 1.060053967 217970154 TIM Thauera sp. MZ1T Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Thauera; 1.03294174 1.031429998 1.035910241 1.047281589 1.017549927 1.047627473 1.02187691 1.0689766 1.047018953 1.012576458 1.029528355 1.04994088 0.993405564 0.981004516 0.989403916 1.032694567 1.052800901 1.035171281 255957239 alkb uncultured bacterium Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria; 0.84262614 0.793870812 0.866350087 0.863755448 0.801216701 0.830751032 0.848417472 0.841240191 0.840408473 0.865823521 0.839816615 163783580 sucD Hydrogenivirga sp. 128-5-R1-1 Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Aquificaceae;genus:Hydrogenivirga; 1.051459344 1.052154901 1.043696585 1.023110866 1.05828199 1.118904794 1.054217937 1.050225704 1.04189364 1.059936965 1.04931253 1.006616578 1.040943015 1.049460933 1.025800058 0.987415274 1.055206392 1.037266799 220936205 fccab Thioalkalivibrio sulfidophilus HL-EbGr7 Sulfur Sulfide Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio;species:Thioalkalivibrio sulfidophilus; 0.889539874 0.861726923 0.849757166 0.906551545 0.809533949 0.81749847 0.836204816 0.894708286 0.867544064 0.878886387 0.82434563 0.873778508 0.796264864 0.835377443 0.87652905 0.904423822 334897845 ara Halorhabdus tiamatea SARL4B Carbon Cycling Carbon degradation Hemicellulose superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halorhabdus;species:Halorhabdus tiamatea; 0.869591043 0.912999843 0.948094071 0.859754943 0.880260082 0.932965204 0.892564909 0.849754523 0.831705491 0.942706527 1.047772814 0.843405024 0.804238893 0.932954826 0.975482476 0.841406836 0.914452874 0.921116947 297629991 chitinase Xenorhabdus nematophila ATCC 19061 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Xenorhabdus;species:Xenorhabdus nematophila; 0.824574732 0.785391371 0.824389262 0.796347407 0.843276856 0.802870996 0.821891563 0.89076896 0.844705474 0.869970766 0.865593679 0.832182931 0.783077911 0.823319004 0.799378637 0.834305564 0.82155429 0.877820889 334730772 poba Ramlibacter tataouinensis TTB310 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Ramlibacter;species:Ramlibacter tataouinensis; 0.910078897 0.889901982 0.86803297 0.884472799 0.879720781 0.893265534 0.836975056 0.836030914 0.891847609 0.875041789 0.828317845 0.880143219 0.893473204 0.809674718 0.889716308 0.902160027 285026909 tfda uncultured bacterium Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria; 0.897352887 0.810098116 0.815591964 0.79587747 0.81521555 0.863705969 0.863319179 0.786694165 0.819413561 0.838168897 227483291 tktA Vibrio vulnificus YJ016 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio vulnificus; 1.030619047 0.835746605 0.824504698 0.83207551 0.848733144 0.837830223 0.900699371 0.84458175 0.837019871 0.816873043 0.854214759 0.816917111 0.843330679 0.8935065 299772112 terc Acinetobacter oleivorans DR1 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter oleivorans; 0.951125991 0.859920766 0.994592215 0.894388372 0.891274739 0.912565464 0.9212813 0.959911991 0.862894193 0.934114733 0.952784359 0.888033111 0.867525644 0.88193619 0.89968353 0.964498571 0.852066401 10187455 nitrilase Alcaligenes faecalis Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Alcaligenes; 1.051832735 1.055770748 0.999781229 1.036866718 0.983928403 1.009309007 0.98907269 0.983787002 1.02752904 1.031983664 0.994311457 1.012441178 0.960088587 0.99200599 0.995760139 0.97514891 0.979239981 1.010670936 71909237 GAPDH_Calvin Dechloromonas aromatica RCB Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Dechloromonas;species:Dechloromonas aromatica; 0.924818534 0.879316628 0.868372157 0.905207499 0.944179249 0.924776603 0.905988755 0.912566508 0.894108076 0.936147526 0.926000459 0.911350762 0.850640871 0.825353805 0.856097959 0.837298855 0.886351112 0.916270436 374298468 mer Desulfovibrio africanus str. Walvis Bay Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio africanus; 0.846444829 0.848969992 0.90637758 0.857536385 0.80387355 0.848923385 0.797555099 0.860118942 0.826015202 0.859053564 0.88129416 0.923013241 0.851736881 0.896576349 395006438 B_lactamase_A Acidovorax sp. CF316 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 1.14111786 1.139700587 1.096218223 1.130885708 1.086319897 1.131713357 1.06537897 1.070213566 1.088225247 1.101899295 1.078421001 1.09148345 1.090494245 1.101374509 1.064537877 1.085757907 1.132684418 1.144377463 305857390 RgaE Paenibacillus polymyxa E681 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus polymyxa; 0.792593057 0.815350888 0.866981287 0.856242326 0.818054825 0.82420785 0.804411461 0.869661588 0.858491554 0.846033472 332377138 fthfs uncultured bacterium Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria; 0.868208112 0.851777364 0.821351736 0.938234715 0.849116621 0.901022554 0.856586019 0.912724542 0.876468393 0.895390666 0.825384533 0.865225107 0.853938379 0.837565442 0.832557228 0.864214745 0.928090208 0.874928396 149204419 SoxB Roseovarius sp. TM1035 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 0.93111991 0.928847686 0.943319976 0.946232734 0.917602512 0.970979563 0.896119932 0.836772814 0.91855927 0.951936929 1.013904739 0.942643832 0.933087404 0.946233046 0.845323432 0.887188676 0.879369552 0.947691729 83851004 PRI Oceanicaulis alexandrii HTCC2633 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Oceanicaulis; 0.835375091 0.788478136 119384433 PRK Paracoccus denitrificans PD1222 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 1.121606077 1.093085479 1.072299118 1.061886455 1.029411621 1.074876409 0.956910055 1.019717376 1.071547143 1.05971699 1.065159663 1.052265518 1.054596298 1.041630539 0.976324771 1.009522848 1.08285018 1.09464892 343784395 amyA Haloarcula hispanica ATCC 33960 Carbon Cycling Carbon degradation Starch superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloarcula;species:Haloarcula hispanica; 1.10717508 1.120945902 1.084229214 1.119279529 1.097142617 1.122818194 1.082883173 1.105166928 1.090299967 1.088610471 1.092616084 1.107272105 1.084239795 1.064587642 1.081964872 1.076573268 1.109657467 1.092391581 407896503 linb Acidovorax sp. KKS102 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 1.181272351 1.130696951 1.14212702 1.140420557 1.128644402 1.141659761 1.108442665 1.122623554 1.137384635 1.115431165 1.119555838 1.130085588 1.132101346 1.079274457 1.117441228 1.080815277 1.177333953 1.133889733 351645340 ligninase Magnaporthe oryzae 70-15 Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 1.132841722 1.033192084 1.065593555 1.101239465 1.028929885 1.072403182 1.043505663 1.086071198 1.075598165 1.006595554 1.041324326 1.073729609 1.025049205 0.985170975 0.934352357 1.069610397 1.118799958 1.017874417 356413784 TIM Gluconobacter morbifer G707 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconobacter;species:Gluconobacter morbifer; 1.063596352 1.013620838 1.034567195 1.070241598 0.995189363 0.995844456 0.968577558 1.035783234 1.013891557 1.007131771 1.032216911 1.063828991 0.992362061 1.003965118 1.056651017 0.997154981 1.028113877 1.005936147 319907286 cellobiase mine drainage metagenome Carbon Cycling Carbon degradation Cellulose 1.097816565 1.112852086 1.112080138 1.11619364 1.23824861 1.119743963 1.120055114 1.089372344 1.172054279 1.110607784 1.104342868 1.082690079 1.086809367 1.061441455 1.040084162 1.068066773 1.124672763 1.098532752 380879321 tktA Thiorhodovibrio sp. 970 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiorhodovibrio; 1.318586736 1.282792949 1.246145652 1.345021888 1.224648741 1.294559317 1.258921977 1.274765648 1.283722345 1.236922328 1.22112692 1.25853737 1.221847553 1.212756649 1.226524499 1.254486911 1.319438564 1.257255072 323273004 badh Microbacterium testaceum StLB037 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Microbacterium;species:Microbacterium testaceum; 1.050177996 1.07900032 0.969297429 1.030613462 1.027521141 1.079235618 1.010409189 1.03035212 0.992142185 1.030840946 0.973534857 1.03567256 1.030093696 1.01735224 0.973696506 1.024500599 1.044834198 1.029465402 226242087 amyA Rhodococcus opacus B4 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus opacus; 1.270729358 1.187596892 1.226057037 1.198162347 1.213666707 1.224575072 1.212922634 1.188660039 1.239450903 1.16430579 1.230126021 1.204561717 1.192827543 1.18485255 1.127893301 1.165875933 1.264108269 1.243902996 160917595 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.282918714 1.273535376 1.262285243 1.243797763 1.239706874 1.280137217 1.228458485 1.19458827 1.265533848 1.252000097 1.255964982 1.260084963 1.2133058 1.224743121 1.208269881 1.23061737 1.242191181 1.26605076 22036072 dxna Terrabacter sp. YK3 Organic Remediation Aromatics Heterocyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Terrabacter; 0.823804463 0.835341539 0.832476669 0.802813469 0.834216629 0.84007588 288921702 cutinase Frankia sp. EUN1f Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 1.117727977 1.087565545 1.07069845 1.125509262 1.08120629 1.089015438 1.10735424 1.109086922 1.102362945 1.06305048 1.092444542 1.102129588 1.074070964 1.094142274 1.085231552 1.089322881 1.092586236 1.061147025 291069861 bphd Citrobacter youngae ATCC 29220 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter youngae; 0.906568757 0.811356006 0.818991313 0.856674492 0.869153724 0.823002191 0.872929323 0.803093578 0.882407005 296255634 SoxC Methylosinus trichosporium OB3b Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylocystaceae;genus:Methylosinus;species:Methylosinus trichosporium; 0.902142015 0.867164633 0.887731139 0.837159715 0.871335206 0.881681647 0.834450955 0.839395225 0.842011966 0.785840661 0.818340188 0.826340148 0.812546415 0.877903499 0.891895408 227463451 endochitinase Isaria fumosorosea Carbon Cycling Carbon degradation Chitin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Cordycipitaceae;genus:Isaria; 0.873127748 0.916099685 0.862843333 0.863220679 0.905131648 0.902009917 0.85604662 0.832251289 0.770116694 0.88334632 0.850137699 0.861859709 0.864600225 0.880589708 0.846946901 0.862054264 0.913632496 330837012 cda Spirochaeta coccoides DSM 17374 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Sphaerochaeta;species:Sphaerochaeta coccoides; 0.915069745 0.861072552 0.831526369 0.946430548 0.88097409 0.823517192 0.90902997 0.899225763 0.887782334 0.848252575 0.937865815 0.819818395 0.875261223 0.856400131 0.929674372 0.861529594 158322196 TIM Agrobacterium rhizogenes Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium; 1.121199033 1.068867933 1.086767885 1.152406213 1.051915295 1.109598645 1.070300593 1.103049863 1.08701339 1.058778737 1.046860525 1.078480997 1.039066867 1.071218724 1.040972055 1.068105519 1.116376805 1.08702066 332335128 RgaE Haliscomenobacter hydrossis DSM 1100 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Saprospiraceae;genus:Haliscomenobacter;species:Haliscomenobacter hydrossis; 1.00944664 0.901215279 0.854133369 0.904919804 0.844394124 0.858385172 0.844100459 0.940170768 0.912454882 0.890265422 0.839633266 0.913844182 0.872881987 0.953098887 0.845725247 0.894086229 0.89791693 0.95333911 89512880 nifh uncultured nitrogen-fixing bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 1.468191979 1.452561512 1.453524956 1.440853413 1.438608669 1.479953968 1.432176824 1.444322027 1.436518934 1.417097647 1.4368506 1.441272621 1.422963746 1.396053637 1.421816361 1.413682027 1.459287041 1.41587637 76666824 aps_apra uncultured sulfate-reducing bacterium Sulfur adenylylsulfate reductase NA superkingdom:Bacteria; 0.80277662 0.921559407 0.862659307 0.831935716 0.822481647 0.857771272 0.80681007 0.815747397 0.807941892 0.859221218 0.829194827 0.817776792 187940063 terc Pseudomonas aeruginosa Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.98664789 0.946674495 0.972679811 0.991132535 0.876200472 0.960142696 0.925081657 0.975576688 0.962315809 0.948173659 0.966833474 0.963692103 0.904178813 0.9362607 0.966759742 0.934228211 0.988448633 0.975078758 238787810 amyA Yersinia frederiksenii ATCC 33641 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia frederiksenii; 0.936076321 0.957184632 0.89508429 0.930571576 0.951259288 0.954167315 0.915818109 0.971454971 0.902849381 0.929554817 0.904876135 0.940158303 0.921989751 0.909745518 0.884529838 0.927536069 0.938970194 0.972299407 149186135 linc Erythrobacter sp. SD-21 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter; 1.258668819 1.280928992 1.221449736 1.244613608 1.226951645 1.279700318 1.226551981 1.245976846 1.237687864 1.255949857 1.221229805 1.239461916 1.208141971 1.209832759 1.190724232 1.214022845 1.252964294 1.272975233 290956786 ara Streptomyces scabiei 87.22 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces scabiei; 1.040254361 1.022623577 1.036687311 1.030096543 1.058971547 1.07321856 1.023507589 1.023050393 1.003799323 1.042818971 1.084366098 1.041432375 1.00015073 0.994313947 0.976994166 1.014688448 1.028279302 1.050761333 325283132 amyA Deinococcus proteolyticus MRP Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus proteolyticus; 1.048373504 1.117419447 1.004500914 1.006623211 1.011957588 1.045044869 0.967527049 0.966633975 1.012212322 1.000801162 0.98361913 1.000383377 0.970292438 0.948365388 0.964650225 0.973684364 1.056420833 1.048733905 209958464 amyA Rhodospirillum centenum SW Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum centenum; 1.049129499 0.980238374 1.017196527 1.058672428 1.01615608 1.038915602 0.957390279 1.02550425 0.998471546 0.980834988 0.981438386 0.992060386 1.027795823 0.988551075 0.979347128 0.965302907 1.083442361 1.027763332 3057081 nosz uncultured eubacterium S321195C Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria; 0.908852982 0.886567515 0.812418558 0.914449057 0.833702917 0.879015655 0.872055862 0.863264569 0.892413017 0.870834676 0.84015318 0.886485965 0.866145281 0.858170677 0.857971343 0.854409211 0.917181172 0.870327634 332377346 fthfs uncultured bacterium Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria; 0.805263316 0.812811463 119391475 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.915755902 0.952205504 0.885104537 0.93561488 0.910308524 0.930907855 0.896579885 0.867787798 0.876524396 0.961625487 0.89823825 0.916213782 0.884276832 0.988502028 0.888821792 0.918570076 0.91690237 0.986301819 303327152 fthfs Desulfovibrio sp. 3_1_syn3 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 0.798486064 0.797354933 0.826450533 0.801976438 0.817154608 33391459 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.925604922 0.940624427 0.948777435 0.919757665 0.961953666 0.929556844 0.952869002 0.952439081 0.903798357 0.94693873 0.919163835 0.952144461 0.933370327 0.903445839 0.910497214 0.86713983 0.917274399 0.938192302 409401034 dehh109 Acidocella sp. MX-AZ02 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acidocella; 0.843660794 0.846734052 0.891775609 0.786492253 0.804416482 0.797335381 0.851179322 0.815076269 306516943 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.083822306 1.075203231 1.035499609 1.100217282 1.075609462 1.068426081 1.054296253 1.063404432 1.050063628 1.039427822 1.010526302 1.07998329 1.007989473 1.004167775 1.009296106 1.008388976 1.094428253 1.07591035 228015255 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.946872078 0.973380382 0.899829277 0.937301216 0.931268484 0.973497719 0.880010427 0.899426632 0.866851175 0.957461752 0.946803811 0.908098782 0.929547965 0.869381318 0.866355199 0.880392679 0.936207719 0.916325868 262404309 endochitinase Vibrio sp. RC586 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 0.77107167 0.809166763 0.804647127 0.845639957 0.819432039 1.060555756 0.85322321 0.796119499 0.848333586 0.840179167 0.778419594 0.820981674 0.765292158 145242988 rgh Aspergillus niger Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 1.022018186 1.008302245 0.943135096 1.009715907 0.966958722 1.009063765 0.953005497 0.991021037 0.995999447 0.985953398 0.98120037 0.963275588 0.941469201 1.018745183 0.956485202 0.974472626 1.009640216 0.986543562 56478490 vdh Aromatoleum aromaticum EbN1 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 0.832651038 0.801136993 0.832221629 0.801661233 0.800964522 0.794298706 0.801944833 0.817302857 0.806055024 398834940 tfda Herbaspirillum sp. YR522 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herbaspirillum; 0.942083653 0.960293982 0.922517925 0.951605882 0.917556991 0.924766754 0.885948931 0.935200867 0.889589531 0.917285981 0.85011794 0.91540005 0.904157956 0.863144334 0.839052837 0.909843782 0.9591086 0.954313774 47076737 narg Geobacillus stearothermophilus Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 1.071992615 1.037505512 1.030698511 1.089773318 1.034421986 1.048804254 1.004125632 1.058483897 1.047225599 1.042557744 1.036464898 1.047420263 0.996914208 0.996512198 1.010609922 1.04661826 1.111238851 1.042721597 355335673 ppx Pseudoxanthomonas spadix BD-a59 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Pseudoxanthomonas;species:Pseudoxanthomonas spadix; 1.080569308 1.082281306 1.038904683 1.038306384 1.022853088 1.069295268 0.994341941 1.013465071 1.049779358 1.026835645 1.026520091 1.027836406 1.015920163 1.014553109 1.016742876 1.026545314 1.070626065 1.069148296 261353232 exopolygalacturonase_fungi Verticillium albo-atrum VaMs.102 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticillium;species:Verticillium alfalfae; 0.94465025 0.926896828 0.940744311 0.91073839 0.940302178 0.938622813 0.875458002 0.862546429 0.915901918 0.879300238 0.894648323 0.885414207 0.902674114 0.896964721 0.863031306 0.875802308 0.949622936 0.942433743 118571830 arsc Mycobacterium ulcerans Agy99 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium ulcerans; 1.063564037 1.060095823 1.065927399 1.055136288 1.093016626 1.086216881 1.084749659 1.075869614 1.0697603 1.056740882 1.08213233 1.036026785 1.033446486 1.060345729 1.025604093 1.003318079 1.057854899 1.072250296 89512460 nifh uncultured nitrogen-fixing bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 1.454876751 1.398373377 1.39497566 1.41960089 1.368667126 1.409688302 1.382178192 1.396751642 1.396057611 1.374410879 1.394208465 1.402036504 1.367516222 1.345984906 1.381737639 1.388642286 1.39927575 1.354954151 226834394 terc Actinomyces urogenitalis DSM 15434 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces urogenitalis; 1.098705914 1.066243134 1.049092296 1.092521912 1.031959912 1.073994321 1.022338076 1.062432071 1.068284747 1.063373146 1.022272859 1.070937622 1.001124729 1.016191341 0.973738409 1.020846093 1.074507416 1.071811167 61808016 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.073910539 1.077934762 1.08611525 1.07065078 1.068055752 1.069610468 1.035768633 1.039447361 1.08059776 1.05208259 1.066480432 1.07108029 1.051520441 1.023644659 1.068684777 1.004970637 1.068219174 1.077977108 356667122 xylg Rhodococcus opacus PD630 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus opacus; 0.782788568 0.79849475 0.842731799 238927773 narg Selenomonas flueggei ATCC 43531 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas flueggei; 1.41024697 1.384146378 1.39150516 1.386573712 1.394633398 1.38080743 1.363115892 1.385623259 1.370125963 1.380344365 1.381500328 1.424467642 1.362098627 1.337557939 1.396995959 1.397564202 1.377484158 1.358812429 222354276 hao uncultured bacterium Nitrogen Nitrification NA superkingdom:Bacteria; 1.020330474 1.192226364 0.96224782 1.148484999 1.122649155 1.191681902 0.853152737 1.051374513 1.135067002 1.181635462 1.131171508 1.102418016 1.127174879 1.054752338 1.172573484 1.014856268 0.924308097 374702218 bend Pseudomonas sp. S9 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.816765611 0.868699223 0.837073175 0.8104568 0.839123739 0.856848646 0.841733704 0.836887109 0.873198565 0.83543887 0.813440661 0.863266338 145246158 amyA Aspergillus niger Carbon Cycling Carbon degradation Starch superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 1.02046355 0.993404121 1.135118076 1.077568939 1.079243553 1.056544073 1.086539642 1.046067801 1.073543648 1.068253288 1.116542894 1.063650097 1.051134903 1.006550595 1.003734524 1.011813093 1.021434528 1.020742157 302418122 cpnb Verticillium albo-atrum VaMs.102 Organic Remediation Other Hydrocarbons NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticillium;species:Verticillium alfalfae; 0.797892958 0.895757254 0.783421809 0.850244323 0.775785543 0.861710311 383764020 atza Caldilinea aerophila DSM 14535 = NBRC 104270 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Chloroflexi;class:Caldilineae;order:Caldilineales;family:Caldilineaceae;genus:Caldilinea;species:Caldilinea aerophila; 1.079697706 1.076323943 1.08387111 1.110105082 1.071078948 1.051050018 1.028057016 1.040276177 1.096755778 1.058709513 1.027234361 1.086614305 1.017438998 1.049028929 1.098369663 1.025627459 1.069395973 1.051350669 108808388 urec Yersinia pestis Antiqua Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia pestis; 1.084490087 1.070982988 1.066278366 1.107347985 1.090823212 1.107050451 1.063695826 1.08816176 1.081332924 1.060282409 1.058205615 1.109727279 1.059043531 1.065684446 1.105682746 1.084024571 1.077408451 1.054994796 374988278 ppx Streptomyces bingchenggensis BCW-1 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces bingchenggensis; 0.769928144 0.789493631 0.765334052 0.813643601 169605891 protease_serine_fungi Phaeosphaeria nodorum SN15 Carbon Cycling Carbon degradation protein superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Phaeosphaeriaceae;genus:Phaeosphaeria;species:Phaeosphaeria nodorum; 0.871838046 0.862005275 0.863642012 0.92355231 0.828439438 0.820931953 0.878208668 0.8541409 0.805753318 0.873620687 0.917190178 0.880084688 296140176 linb Tsukamurella paurometabola DSM 20162 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Tsukamurellaceae;genus:Tsukamurella;species:Tsukamurella paurometabola; 0.930629812 0.914165056 0.978326201 0.952841924 1.016708264 1.057062643 0.988132074 0.945633526 0.951314518 0.947780462 0.930304136 0.969351705 0.915724786 0.932368142 0.934074731 0.932148645 0.985728771 0.99662271 309812613 amyA Dermacoccus sp. Ellin185 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dermacoccaceae;genus:Dermacoccus; 1.196399186 1.178999994 1.167447492 1.198883195 1.151366545 1.194027921 1.165174994 1.180929356 1.178486886 1.171753969 1.156371907 1.174803584 1.158120795 1.143478848 1.154984342 1.164986502 1.262011989 1.179134347 332039933 ppx Hylemonella gracilis ATCC 19624 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Hylemonella;species:Hylemonella gracilis; 1.107799321 1.087406427 1.063865638 1.100984194 1.026406105 1.117824345 1.03515296 1.076582498 1.096978105 1.075968361 1.056091378 1.073117834 1.003578782 1.046599941 1.015016095 1.064188941 1.084097749 1.101150681 311891027 bphd Rhodococcus equi 103S Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus equi; 0.940576764 0.908740271 0.938191528 0.942329018 0.933713592 0.952395642 0.955705535 0.922754176 0.945479771 0.930045449 0.943119161 0.961220687 0.926089215 0.901038414 0.899620429 0.929907468 0.914349634 0.926001382 338800348 cysJ Pseudomonas stutzeri ATCC 17588 = LMG 11199 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 1.124469025 1.122727687 1.129937845 1.152849457 1.119075906 1.141692459 1.12516694 1.152331923 1.127301812 1.116193063 1.097866792 1.137010366 1.098587452 1.092919357 1.075762804 1.094493263 1.135357418 1.099879582 62485020 one_ring_23diox Rhodococcus opacus Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 1.209469148 1.278875314 1.221064496 1.223141131 1.20799075 1.276461534 1.18737523 1.196265984 1.172663827 1.236500889 1.252849978 1.216905962 1.210957405 1.226224891 1.163217168 1.221326462 1.225320093 1.245595449 356667018 xamo Rhodococcus opacus PD630 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus opacus; 0.776706329 0.817093366 0.810725518 0.838240508 162454831 urec Sorangium cellulosum 'So ce 56' Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 1.067710979 1.004214532 1.037701406 1.071854151 1.049931393 1.049088396 1.02948598 1.043329945 1.0468993 0.980081605 1.015225102 1.035824079 1.014010075 0.986174629 1.021249145 1.017205552 1.066901385 1.03150518 284029942 linb Kribbella flavida DSM 17836 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Kribbella;species:Kribbella flavida; 1.241740334 1.213430816 1.163683455 1.201392936 1.176134644 1.223509558 1.156426129 1.210918509 1.201647696 1.184141158 1.171874932 1.200391588 1.167148408 1.176606468 1.15744126 1.19285104 1.219125649 1.214851486 307725646 vana Burkholderia sp. CCGE1003 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 1.204166459 1.20046352 1.178980962 1.204064563 1.179640287 1.206495566 1.189011393 1.188291221 1.202986424 1.202370968 1.18279707 1.202440944 1.210335151 1.148668501 1.144706849 1.142715552 1.19692945 1.17002352 59957114 rubisco uncultured deep-sea archaeon Carbon Cycling Carbon fixation Calvin cycle superkingdom:Archaea; 0.87251144 0.923296578 0.830807177 0.823113952 0.853287328 0.827102754 0.867884089 0.853488462 0.846811799 0.869719639 0.859545038 0.92129283 374998812 exaa(moxf) Azospirillum lipoferum 4B Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum lipoferum; 1.01698149 1.006025479 1.034893129 0.983756492 0.961741451 0.96480571 0.96140212 0.937321027 0.968281543 0.970123335 0.93753551 0.946503921 0.909380581 0.930852008 0.803639536 0.875729013 0.960159997 1.04214248 319948792 arsc Dietzia cinnamea P4 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dietziaceae;genus:Dietzia;species:Dietzia cinnamea; 1.309651462 1.232574238 1.243282395 1.268409404 1.244171843 1.273288743 1.252735904 1.259669204 1.26048637 1.222418005 1.251148672 1.271685369 1.233865715 1.196901604 1.211799922 1.213396563 1.269303347 1.216314561 338741190 fthfs Hyphomicrobium sp. MC1 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium; 1.095505554 1.058197356 1.076777046 1.108917158 1.08265817 1.120050367 1.077308192 1.078912932 1.065549477 1.065164385 1.081726917 1.083156346 1.076373347 1.0376221 1.048908114 1.045355955 1.097675269 1.061157572 363980899 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.864004236 0.832947093 77381501 pcag Pseudomonas fluorescens PfO-1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 0.887336869 0.925995144 1.031787898 0.95973726 0.928075829 0.888930709 0.921947358 0.920431034 0.880113751 0.896991041 0.850453574 0.906144816 0.820100125 0.816202477 0.875630149 0.903432745 0.835120704 381147101 amoa uncultured ammonia-oxidizing archaeon Nitrogen Nitrification NA superkingdom:Archaea; 1.33954887 1.294993102 1.323744755 1.336219631 1.323340257 1.335535711 1.354017219 1.339587634 1.33542336 1.306162459 1.320241745 1.333413068 1.29218815 1.297116699 1.301234134 1.302881289 1.326186089 1.266975462 110819316 mdlc Rhodococcus sp. RHA1 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 0.811350614 0.811234461 0.824116298 0.84589097 0.83382286 0.856652532 0.806362287 150274104 hyaluronidase Bacteroides capillosus ATCC 29799 Carbon Cycling Carbon degradation hyaluronic acid superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;genus:Pseudoflavonifractor;species:Pseudoflavonifractor capillosus; 0.948296033 0.924965273 0.923559844 0.9836858 0.927476767 0.897705163 0.898198418 0.908512522 0.947413505 0.932524207 0.870699629 0.937766993 0.901867217 0.908919124 0.87280575 0.885341047 0.952397708 0.939120664 240171183 limeh Mycobacterium kansasii ATCC 12478 Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium kansasii; 1.131908014 1.124925643 1.111553051 1.10250822 1.098054657 1.122314983 1.128304478 1.122100927 1.111308046 1.105407639 1.09369888 1.086345376 1.050697944 1.07147353 1.05175007 1.04881365 1.10349477 1.133128323 164455396 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 0.961101536 0.97896993 0.96745777 0.990467247 0.939949695 0.968554812 0.932696164 1.005440057 1.021129288 0.962011759 0.977585125 1.020352009 0.92016841 0.946789068 0.930596423 0.935102475 0.985462828 0.993366905 373550420 mdlc Mycobacterium tusciae JS617 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tusciae; 1.03488859 0.99910348 0.99750501 1.011239162 1.034107093 1.02161218 1.001610124 0.985496325 0.992585606 1.027590428 1.015093609 1.001981979 0.999173048 0.983528316 0.89764948 0.966613096 1.008939021 1.033079162 319799377 terc mine drainage metagenome Metal Homeostasis Tellurium Detoxification 1.08045529 1.121569627 1.089773308 1.107456588 1.113818837 1.111498956 1.116472144 1.09126221 1.11567343 1.101606141 1.07555388 1.076407295 1.091698058 1.050002321 1.03927362 1.039340441 1.090939383 1.098753725 150273656 ccmL Bacteroides capillosus ATCC 29799 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;genus:Pseudoflavonifractor;species:Pseudoflavonifractor capillosus; 1.117765913 1.120718407 1.114791958 1.111616023 1.088858177 1.100532782 1.069843861 1.061736952 1.068257332 1.059850977 1.068955259 1.103820819 1.090716007 1.071604384 1.051142537 1.068957035 1.111444931 1.093557599 93358210 alkk Cupriavidus metallidurans CH34 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 1.129729833 1.150578741 1.120148132 1.135081736 1.108359916 1.150848005 1.111506019 1.115310612 1.105834031 1.113033307 1.096466759 1.113680448 1.108982462 1.08762688 1.092617528 1.105451002 1.141553955 1.129486507 150036122 soxY Thiobacillus plumbophilus Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus; 1.009456262 0.995359511 1.003437522 1.009274432 1.005960794 1.004777471 0.955781098 0.947169178 1.001912269 0.982017442 0.90736892 0.967236886 0.939667791 0.930600647 0.943029655 0.947135001 1.066083691 1.020578007 146342967 mdlc Bradyrhizobium sp. ORS278 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 1.165126336 1.175131133 1.146458389 1.19889939 1.169313229 1.189014889 1.144034065 1.127086768 1.143395813 1.146348534 1.142956616 1.161313521 1.171993702 1.123677188 1.128056409 1.135590231 1.197723408 1.126083967 83853076 FBPase Oceanicaulis sp. HTCC2633 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Oceanicaulis; 0.82661178 0.807562706 0.827185391 0.889493173 0.906869415 0.899785862 0.952809292 0.930606631 0.862313053 0.877967715 0.866635465 0.856292939 0.872617193 0.830237602 313847547 aps_apra Gloverina rectangularis gill endosymbiont Sulfur adenylylsulfate reductase NA superkingdom:Bacteria; 0.914878213 0.870778867 0.884982181 0.911267968 0.888635551 0.893995918 0.878762236 0.91726813 0.934344675 0.915609652 0.903120426 0.903562835 0.891048268 0.907518097 0.896933538 0.904019348 0.928608855 0.867202526 119116148 bphc uncultured bacterium Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria; 0.866333208 0.872116568 0.892261547 0.89867501 0.812150479 0.877672932 0.821353535 0.873189046 0.897524188 0.92160158 0.876050132 0.898263275 0.846234798 0.865113893 0.789084996 0.820088659 0.893580431 0.945619055 58264792 exopolygalacturonase_fungi Cryptococcus neoformans var. neoformans JEC21 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Tremellomycetes;order:Tremellales;family:Tremellaceae;genus:Filobasidiella;species:Cryptococcus neoformans; 1.47852138 1.45274206 1.446883703 1.474964904 1.449514886 1.456154209 1.445437927 1.474010283 1.448513998 1.412140144 1.444860387 1.455682123 1.421315582 1.387372406 1.45033264 1.436392974 1.465460632 1.407320382 365902215 badh Lactobacillus malefermentans KCTC 3548 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus malefermentans; 0.797595527 0.835601327 0.808417221 0.804320131 0.799534372 77463325 ppx Rhodobacter sphaeroides 2.4.1 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 1.061024012 1.012405362 1.034611365 1.058695509 0.998755359 1.060936767 0.976056801 0.995584116 1.064252069 1.017594198 0.985131982 0.995389588 1.001863214 1.023870176 1.037693896 1.02867019 1.046447979 1.030149475 148501120 vana Sphingomonas wittichii RW1 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 0.997247968 1.006198392 0.944640372 1.006015743 0.993532359 0.997906866 1.00671286 1.002544907 0.971337915 0.985197433 0.998304995 1.007965836 0.967790538 0.947107798 0.983008452 0.999060701 0.969194814 0.999938917 189203367 p450aro Pyrenophora tritici-repentis Pt-1C-BFP Organic Remediation Aromatics polycyclic aromatics superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 1.00981169 0.8767795 0.911087956 0.844366695 0.889147303 0.86933562 0.87335897 0.88557861 0.843345633 0.882802681 0.844916684 0.8047912 0.932851209 0.838259638 0.814761024 0.888748655 0.92466928 158521609 mer Desulfococcus oleovorans Hxd3 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfococcus;species:Desulfococcus oleovorans; 0.892538423 0.899787163 0.87726216 0.888260387 0.822114964 0.885921636 0.862378086 0.881730977 0.864582423 0.839119521 0.8607747 0.855251476 0.859830089 0.886393801 116255138 SoxC Rhizobium leguminosarum bv. viciae 3841 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 0.842511253 0.859228328 0.830891428 0.856144773 0.81219255 0.813071294 0.814048212 0.850286623 0.823522365 333749131 fthfs Desulfotomaculum carboxydivorans CO-1-SRB Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum carboxydivorans; 0.935934158 0.941070705 0.858952367 0.919349847 0.942845235 0.924749869 0.892538736 0.853964061 0.873991485 0.944905804 0.832720988 0.888774314 0.930822207 0.815195516 0.849703164 0.90804071 0.900661684 0.920126182 284032429 amyA Kribbella flavida DSM 17836 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Kribbella;species:Kribbella flavida; 0.842343858 0.838651429 0.885751511 0.913241282 0.823444999 0.832655013 0.835064183 0.880861967 0.870749085 145282559 xamo Pyrobaculum arsenaticum DSM 13514 Organic Remediation Other Hydrocarbons NA superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum arsenaticum; 1.32804487 1.266364472 1.265766345 1.278727187 1.255035293 1.322129882 1.265660734 1.277460176 1.265904335 1.256806637 1.248516838 1.25338109 1.250095741 1.245998981 1.239380029 1.268985455 1.318279347 1.269077384 291308634 fthfs Neisseria elongata subsp. glycolytica ATCC 29315 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria elongata; 0.918679267 0.867328167 0.814979853 0.92214186 0.86617961 0.870833878 0.871255977 0.913979004 0.859507166 0.829806013 0.882732617 0.849593055 0.89493378 0.931041543 315412120 mannanase Micromonospora sp. L5 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Micromonospora; 1.354707784 1.298155001 1.298017998 1.318142452 1.306179827 1.347833993 1.285464159 1.322818276 1.299671172 1.294549286 1.310107797 1.318777287 1.282786782 1.294910232 1.295624293 1.309911553 1.323100701 1.287351945 389576145 nifh Eubacterium cellulosolvens 6 Nitrogen Nitrogen fixation NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Eubacteriaceae;genus:Eubacterium;species:Eubacterium cellulosolvens; 0.821389732 0.818906138 0.800398516 0.790144235 0.818248043 0.785601737 0.848366136 0.850905062 0.858155336 0.777233725 0.853110004 0.763476118 0.849229663 227069653 nira uncultured archaeon Nitrogen Assimilatory N reduction NA superkingdom:Archaea; 0.961446768 0.923978182 0.976004016 0.952678785 0.919503853 0.926636377 0.886686291 0.903170499 0.982463601 0.941771696 0.928553398 0.919519371 0.922619528 0.969327526 0.89622152 0.892457506 0.961360568 0.955251922 381200695 ppx Sphingobium yanoikuyae XLDN2-5 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium;species:Sphingobium yanoikuyae; 1.057800683 1.082152889 1.029627411 1.065215552 1.056176433 1.058077379 1.026547719 1.051414361 1.064447643 1.036537628 1.033337256 1.047206113 1.040171056 1.010774613 1.033347805 1.054660315 1.075476162 1.067780429 169235691 chitinase Halobacterium salinarum R1 Carbon Cycling Carbon degradation Chitin superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halobacterium;species:Halobacterium salinarum; 1.049292505 1.103197544 1.04252425 1.040781706 1.053017674 1.073332493 1.044288306 1.072552918 1.032840725 1.041469259 1.045425276 1.031767367 1.04130454 1.039063366 0.998375888 1.005153675 1.055814907 1.029851524 110632102 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.279960236 1.25474048 1.245687424 1.246653938 1.225712803 1.276040379 1.236328849 1.251337116 1.218865037 1.228379095 1.239278325 1.243952872 1.243837659 1.20549585 1.212286999 1.223106439 1.266364628 1.244535972 156628075 fosx Pseudomonas aeruginosa Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.805747878 0.798919329 24985196 poba Pseudomonas putida KT2440 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 1.027755931 1.033519117 1.027780911 1.026708209 1.010676529 1.016271578 1.029460465 1.016352661 1.002896972 1.03777729 1.020552676 1.021441522 0.985882149 0.996574007 1.00074813 0.97773299 1.068605589 1.068666718 340788109 amie Collimonas fungivorans Ter331 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Collimonas;species:Collimonas fungivorans; 1.206724637 1.081892549 1.158944104 1.147199732 1.238224946 1.217976298 1.185546695 0.965781027 1.020341956 1.19804324 1.148407011 1.150745378 1.188872047 1.192823144 1.280703218 1.137883512 1.171872993 1.152355479 229320480 CsoS1_CcmK Rhodococcus erythropolis SK121 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 0.97315939 1.031816778 0.957432509 0.963544466 0.939761888 1.045188878 0.98258707 0.964650127 0.934520132 0.985414265 0.940929645 0.966415358 0.943902914 0.947207772 0.948990075 0.947708183 1.005858438 1.014578617 333829661 amoa uncultured ammonia-oxidizing bacterium Nitrogen Nitrification NA superkingdom:Bacteria; 0.826085784 0.882806215 0.842717433 0.90140092 0.902607382 0.870331455 0.860043672 0.857857637 0.8658533 0.850341686 0.896118542 0.907036871 0.852942735 0.868464381 0.859295951 0.84479685 0.833442108 282571979 dsra Subdoligranulum variabile DSM 15176 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Subdoligranulum;species:Subdoligranulum variabile; 1.058333399 0.982946453 0.948141276 0.981982072 1.014441546 0.968238591 0.954138674 0.929450317 0.965166574 0.996230544 1.021232373 1.045806886 1.03428142 0.973053178 0.938973408 0.969219829 0.97991166 0.962182383 367036469 phenol_oxidase Thielavia terrestris NRRL 8126 Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Thielavia;species:Thielavia terrestris; 0.817507407 0.801906492 0.772724092 221233792 RgaE Caulobacter crescentus NA1000 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter vibrioides; 0.825509849 0.913380094 0.861412939 0.879953507 0.857372336 0.938334522 0.85017237 0.868691354 0.862510913 0.920765508 0.852234259 0.870212094 0.817934162 0.86132942 0.855216097 6066626 linc Streptomyces coelicolor A3(2) Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 1.002141507 1.025858357 0.978824316 0.975056981 1.004518317 1.002573683 0.944714387 0.977748462 0.923325969 0.966005397 0.948653057 0.987276174 0.955812564 0.956421388 0.858869062 0.974667629 1.006411769 1.018481295 169848689 phenol_oxidase Coprinopsis cinerea okayama7#130 Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 1.242590566 1.120238293 1.140161803 1.152376892 1.123939837 1.100572954 1.120248977 1.099943005 1.143370466 1.142442011 1.124150383 1.137453865 1.074459415 1.063875998 1.09307595 1.077041407 1.166080335 1.11797313 256839360 amyA Parabacteroides sp. D13 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Parabacteroides; 0.932285609 0.927248595 0.951909013 0.96234705 0.888759204 0.883015028 0.891439105 0.925229649 0.91148525 0.916053764 0.837755203 0.938688071 0.874867958 0.817586641 0.837034896 0.877735271 0.930100673 0.880979645 328809555 xylanase Verrucosispora maris AB-18-032 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Verrucosispora;species:Verrucosispora maris; 1.143214782 1.099543841 1.080837694 1.121648033 1.090660903 1.117150987 1.095794022 1.103038309 1.103721524 1.060478192 1.105519603 1.104702634 1.090545527 1.06813292 1.075641127 1.099971045 1.132719547 1.092847603 209500047 cellobiase Burkholderia sp. H160 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 1.171641721 1.184567623 1.194182758 1.185556856 1.171372211 1.17995372 1.188681726 1.156779199 1.16796031 1.171387495 1.1639845 1.18803788 1.180599679 1.138289874 1.14815994 1.158625158 1.158905591 1.162218463 83749921 mer Ralstonia solanacearum UW551 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 1.173953084 1.121576725 1.157434149 1.161319722 1.179416329 1.219766531 1.184270812 1.183029716 1.163193197 1.158125129 1.153594507 1.171462686 1.143658113 1.110444866 1.12938364 1.121982109 1.178900321 1.140707372 82801435 alkb bacterium alkW69 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria; 0.772794182 0.79770461 118462966 cdh Mycobacterium avium 104 Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 1.17749009 1.159284982 1.17991216 1.188130632 1.16348882 1.142311571 1.132489536 1.156719521 1.16699405 1.151269959 1.155558229 1.164554711 1.13721269 1.122805967 1.12924758 1.156078292 1.175902933 1.143310904 322706446 pcpe Metarhizium anisopliae ARSEF 23 Organic Remediation Herbicides related compound NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Clavicipitaceae;genus:Metarhizium;species:Metarhizium anisopliae; 1.001841596 1.040323539 0.98718974 0.993845733 1.023042042 1.002744178 0.990848725 0.975360045 0.990051153 0.97571188 0.980993696 0.944701617 0.995359982 0.967034527 1.014247983 1.029122007 197715961 ara Streptomyces sviceus ATCC 29083 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 1.19916027 1.247915907 1.183306184 1.177616893 1.184231678 1.22361895 1.144153136 1.141029692 1.176278675 1.169028444 1.174107432 1.154875849 1.163942142 1.167194684 1.124066419 1.13680869 1.221677783 1.2006977 254443231 mannanase Verrucomicrobiae bacterium DG1235 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales; 0.820591234 0.797393534 0.837435032 0.811887672 0.808816656 0.81568267 0.814097567 0.791003755 0.806292567 168193898 catb Methylobacterium sp. 4-46 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 0.878028089 0.844014912 0.846848406 0.894657395 0.865940626 0.850958499 0.899496632 0.885525219 0.858856302 0.87267651 0.869209197 0.876914885 0.811022385 0.817517548 0.812721308 0.856076339 0.869659206 373951903 arsc Mucilaginibacter paludis DSM 18603 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Mucilaginibacter;species:Mucilaginibacter paludis; 0.896876521 0.880089363 0.813814189 0.866610051 0.873350124 0.889289797 0.801725846 0.828670611 0.802447729 0.834935672 0.838796246 0.882959772 0.919405464 0.903257845 88814399 xyla marine actinobacterium PHSC20C1 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria; 1.198378866 1.176735262 1.169256104 1.218279229 1.138312331 1.190317842 1.147600828 1.176416361 1.186551463 1.155591068 1.174600514 1.184304798 1.121947291 1.136120835 1.075252603 1.138989836 1.18896874 1.155619481 313680999 amyA Oceanithermus profundus DSM 14977 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Oceanithermus;species:Oceanithermus profundus; 0.785022477 0.915414456 296170923 one_ring_23diox Mycobacterium parascrofulaceum ATCC BAA-614 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium parascrofulaceum; 1.299568808 1.278074195 1.264999826 1.290972175 1.250372554 1.292249225 1.273132898 1.293583355 1.26624435 1.262547271 1.259264185 1.285095397 1.256576023 1.242688502 1.255794986 1.263052654 1.288925904 1.273110648 85698852 pgk Nitrobacter sp. Nb-311A Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter; 1.000059431 0.958616606 0.854556201 0.852745167 0.838679514 0.907033958 0.857432866 0.833508533 0.919813157 0.888061703 0.925614302 0.866303854 0.872919847 0.852912647 0.846173382 0.901873132 0.911409828 118435542 atzb Stappia aggregata IAM 12614 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 1.024702276 0.981649884 0.9401815 1.025807797 0.946506464 0.944683494 0.898796792 0.945294248 0.993988657 0.941698411 1.009632736 1.024202457 255112576 dsra Thermoanaerobacterium thermosaccharolyticum DSM 571 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacterales Family III. Incertae Sedis;genus:Thermoanaerobacterium;species:Thermoanaerobacterium thermosaccharolyticum; 0.94212389 0.924138867 0.864585523 0.978574639 0.934039543 0.930349831 0.911974759 0.941209695 0.977825535 0.918765328 0.963598876 0.934246538 0.892570411 0.930224583 0.890214759 0.949311791 0.970182459 0.959152634 291371652 norb Haloferax volcanii DS2 Nitrogen Denitrification NA superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloferax;species:Haloferax volcanii; 0.941712313 0.911090066 0.929647782 0.966955532 0.856313255 0.881240535 0.839330056 0.889433532 0.947592067 0.882782094 0.956105637 0.957348167 0.873082114 0.859288929 0.871922725 0.845144259 0.900668085 0.883481229 259345737 nbac Silicibacter sp. TrichCH4B Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 0.803968143 0.857283522 0.816943886 0.788096432 333927772 fosa Serratia sp. AS12 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia; 1.104650095 1.093215686 1.073194419 1.082007162 1.099478429 1.149168716 1.100511493 1.079108889 1.067140927 1.101589739 1.080795753 1.112376118 1.053455563 1.105616008 1.030221047 1.078163028 1.063580084 1.110148877 378719377 one_ring_12diox Gordonia polyisoprenivorans VH2 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia polyisoprenivorans; 1.24355335 1.209900214 1.201401592 1.214548009 1.18364695 1.248914983 1.170413312 1.196879157 1.199884198 1.20204952 1.190840854 1.193654411 1.17014006 1.192290835 1.160984591 1.203283353 1.239559636 1.209645568 38505862 arsc Synechocystis sp. PCC 6803 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechocystis; 0.96294877 0.926971905 0.994165652 0.999739993 0.939623011 0.963389125 0.917728957 0.956481197 0.963689723 0.962599582 0.944158002 0.964576827 0.905394343 0.942017742 0.955975258 0.915130461 0.941612107 0.914810576 157912049 GAPDH_Calvin Dinoroseobacter shibae DFL 12 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 0.852920111 0.909471635 0.894070421 0.864865253 0.90896132 0.88252588 0.846010561 0.817186085 0.880880474 0.906050979 0.905881589 0.864461387 0.921802726 0.874395736 0.896804898 0.797323973 0.869116889 124389563 rubisco Nitrococcus mobilis Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Nitrococcus; 0.953337345 0.908488913 0.876747874 0.916549203 0.901491187 0.91321952 0.918580415 0.918829596 0.905211443 0.90909615 0.877676598 0.889950301 0.8774462 0.907674433 0.893626736 0.923825348 0.881274622 0.897553642 332171966 cysI Glaciecola sp. 4H-3-7+YE-5 Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Glaciecola; 0.785425493 0.856655034 0.793033903 0.82486768 0.883146208 0.797937068 0.780711352 0.91765097 0.824977503 0.918621076 0.881734216 0.812511246 0.876907491 0.854769192 117188415 nitrate_reductase uncultured eukaryote Nitrogen N Assimilation NA superkingdom:Eukaryota; 0.947492147 0.916827255 0.925883748 0.936255137 0.903255487 0.867825734 0.920535162 0.888380949 0.893626807 0.880075613 0.933344068 0.944125635 0.906699458 0.824050885 0.845687007 0.884574795 0.901688772 0.861604643 85827193 dmdA Roseobacter sp. MED193 Sulfur DMSP degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 1.105273974 1.102429662 1.111822864 1.128470287 1.116536751 1.093897348 1.110223762 1.122299212 1.122555085 1.10052322 1.087583602 1.131590757 1.099564466 1.067851394 1.071354778 1.086638434 1.106292952 1.118948796 32308892 chitinase Pseudomonas sp. BK1 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.954833551 0.924871738 0.959947326 0.97587748 0.930742175 0.885284631 0.912623873 0.941570204 0.967571853 0.913486439 0.890352187 0.959604115 0.872889181 0.914388894 0.843555617 0.924159601 0.948879021 0.938282081 18182588 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 0.800541687 0.830694805 0.83538484 0.850366635 0.854613342 0.854538129 0.825161128 0.831627268 0.803655507 0.825061633 239802575 pgk Variovorax paradoxus S110 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 1.315064358 1.28501548 1.284366395 1.276006657 1.278263456 1.30282905 1.266511526 1.263513173 1.274977851 1.28166671 1.266582919 1.287994397 1.23289365 1.252024805 1.204310455 1.242850395 1.282419647 1.248073959 256585852 nitrilase Saccharomonospora viridis DSM 43017 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora viridis; 0.916459163 0.908317003 0.905345275 0.875466699 0.932734151 0.909604479 0.897237438 0.921050487 0.894148543 0.873514131 0.905940227 0.883030828 0.866996331 0.818891026 0.862280494 0.814790627 146283407 trzn Pseudomonas stutzeri A1501 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 0.974389951 0.970449954 0.972591499 0.953508217 0.890775898 0.946435405 0.888134251 0.919890378 0.956232303 0.952910904 0.943651679 0.908975816 0.919997883 0.932913024 0.917231778 0.943627852 0.966979535 0.991983546 304345946 mannanase Paenibacillus curdlanolyticus YK9 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus curdlanolyticus; 1.167647543 1.144869298 1.146772319 1.132320213 1.145455621 1.162803418 1.129486787 1.086046733 1.128983182 1.114145821 1.072234766 1.092728977 1.087474002 1.076245272 1.03799871 1.073998299 1.143458184 1.158838445 209401774 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.012272919 0.956567857 1.02273482 1.00436614 0.993142971 1.066797929 0.917152602 0.962293622 1.071102806 0.949791212 0.971846335 1.025666582 0.998621958 0.995566725 1.095215441 1.018192969 1.088650335 1.030651907 390616394 alkb Mycobacterium chubuense NBB4 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium chubuense; 1.149712099 1.148595933 1.129361783 1.144511625 1.133104931 1.140904926 1.110671174 1.123232786 1.128076878 1.098244292 1.156063186 1.136638877 1.112690019 1.090707569 1.088670172 1.092008169 1.148105043 1.137811587 164455582 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 1.119681633 1.036447688 1.048335033 1.018920017 1.009748774 1.110880405 1.009660236 1.030937429 1.020261127 1.040835002 1.030815021 1.025892738 1.020565263 1.05156992 1.053924463 1.014954005 1.04321846 1.103535739 256389660 chitinase Catenulispora acidiphila DSM 44928 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 1.025565622 1.050292977 0.954187558 1.032771504 0.982625587 1.022622932 0.967492745 0.974190065 1.000880203 0.969724538 0.966923455 0.994882203 0.982660978 0.975753816 0.959488355 0.95586722 1.007170381 1.012654034 296270719 mdlc Thermobispora bispora DSM 43833 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Thermobispora;species:Thermobispora bispora; 1.128634774 1.11332926 1.106863932 1.129813031 1.110287379 1.116248604 1.079084854 1.133388077 1.106034856 1.102817287 1.102957571 1.107797718 1.094022623 1.110311372 1.063010854 1.101208142 1.117730986 1.112057067 333932294 cmci Serratia plymuthica AS9 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia plymuthica; 1.076081718 1.062608227 1.064588713 1.058499013 1.084885493 1.0800795 1.091051009 1.086140738 1.066419472 1.055839304 1.06428006 1.055946089 1.033611747 1.009745355 0.994989366 1.008778059 1.063071457 1.059800137 164455808 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 1.001345849 1.034953763 0.957504443 0.992513398 0.987753398 0.989158274 0.939793117 0.943395637 0.997747826 0.964446303 0.965562161 0.969793626 0.941354875 0.945721995 0.82496205 0.907516672 0.97946856 1.035867404 355333712 endoglucanase Pseudoxanthomonas spadix BD-a59 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Pseudoxanthomonas;species:Pseudoxanthomonas spadix; 1.384873239 1.342385589 1.31756831 1.346988957 1.326669435 1.347481713 1.312466936 1.32878954 1.343120491 1.354756056 1.33157917 1.352580656 1.296358635 1.321664167 1.283072851 1.310725311 1.345535183 1.30520163 300087989 glucoamylase Dehalogenimonas lykanthroporepellens BL-DC-9 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidia;genus:Dehalogenimonas;species:Dehalogenimonas lykanthroporepellens; 1.187036591 1.17018639 1.188621387 1.19136214 1.176113655 1.197338221 1.189317128 1.158944766 1.171584364 1.145808098 1.157373867 1.170263698 1.145608483 1.126296102 1.148695486 1.156001767 1.189690805 1.137655357 114569955 TIM Maricaulis maris MCS10 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Maricaulis;species:Maricaulis maris; 0.999220521 0.951719624 0.957260951 0.990153039 0.978313698 0.976037226 1.003714308 0.982833397 0.98218257 0.957250203 0.997624822 0.961687274 1.007945487 0.937699781 0.934228979 0.946832054 1.005942103 0.946979631 86553294 GAPDH_Calvin Synechococcus sp. JA-3-3Ab Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 0.872144274 0.97176767 0.912094124 0.974675445 0.907380394 0.913095157 0.84807313 0.866247479 0.888250826 0.938885861 0.835328048 0.896485446 0.908432403 0.853667678 0.84427012 0.900230048 0.900511493 0.907726933 379989495 dsrB uncultured bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.902894963 0.919935855 0.842867986 0.942677207 0.90283194 0.945782365 0.885987463 0.884794457 0.884346394 0.918380801 0.913410662 0.905884113 0.871892205 0.894581146 0.873703665 0.87728616 0.940845733 0.916235976 344174825 arsc Ralstonia syzygii R24 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia syzygii; 0.79298768 0.863767836 0.817875538 0.812062712 0.879924964 0.84044457 0.878992516 0.830625484 0.785032783 0.829394877 0.83330438 0.823743985 0.796108234 0.799310727 0.845054549 225001297 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.338099517 1.309341657 1.284257651 1.294943191 1.263353653 1.324635167 1.283759189 1.298347986 1.278026839 1.272952695 1.290693428 1.302255996 1.27473212 1.278497787 1.272812716 1.282884606 1.298347529 1.266354038 227990289 glucoamylase Meiothermus silvanus DSM 9946 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Meiothermus;species:Meiothermus silvanus; 1.197249188 1.194637934 1.166205964 1.203804829 1.149377138 1.155551633 1.155413547 1.172727037 1.151885767 1.130784099 1.141641797 1.176347022 1.143265401 1.116012932 1.153000043 1.142133066 1.179232377 1.127961977 332670361 terc Cellulomonas fimi ATCC 484 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas;species:Cellulomonas fimi; 1.146517534 1.148171251 1.176678079 1.158024554 1.168322521 1.192310966 1.182840968 1.17353624 1.148832036 1.139347135 1.136540318 1.152531352 1.095780009 1.110616973 1.090431587 1.125207411 1.187155882 1.202987904 333919789 alkb Amycolicicoccus subflavus DQS3-9A1 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Amycolicicoccus;species:Amycolicicoccus subflavus; 0.967219441 0.858607326 0.858067114 0.846851007 0.884068817 0.83125172 0.840346727 0.865995774 14022858 phn Mesorhizobium loti MAFF303099 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 0.847957007 0.833685775 0.847292706 0.835325758 146313536 terc Enterobacter sp. 638 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 0.867041116 0.910201524 0.903175237 0.904549861 0.915280664 0.894008032 0.917947512 0.887987578 0.896580456 0.88671394 0.920931778 0.870094481 0.845568966 0.834865717 0.864770195 0.819596517 0.849758229 156857765 aps_apra uncultured bacterium Sulfur adenylylsulfate reductase NA superkingdom:Bacteria; 1.177729722 1.19488739 1.159673441 1.144367322 1.175749495 1.205182153 1.179082771 1.119592944 1.162827908 1.236393523 1.195286576 1.191718029 1.158386272 1.180832764 1.131811754 1.196079403 1.162092012 1.185523045 1899048 chitinase Serratia plymuthica Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia; 1.100609983 1.093511609 1.064121929 1.109249068 1.043509524 1.139787802 1.0653966 1.115969775 1.110640006 1.080111681 1.060289383 1.075745316 1.048017262 1.056414419 1.037315338 1.111247472 1.133148947 1.08524527 149936208 acetylglucosaminidase Parabacteroides distasonis ATCC 8503 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Parabacteroides;species:Parabacteroides distasonis; 1.275730902 1.209741108 1.23014021 1.258350627 1.213393943 1.249196278 1.189510194 1.247211763 1.247895983 1.210720813 1.217044014 1.216810296 1.188263409 1.206245846 1.195055002 1.226452546 1.277519274 1.192684076 404419664 badh Mycobacterium fortuitum subsp. fortuitum DSM 46621 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium fortuitum; 1.224565031 1.178888789 1.196809781 1.209966317 1.194322731 1.222229575 1.183680354 1.193074051 1.197170483 1.170342924 1.179604211 1.185959139 1.170301319 1.128835829 1.130529202 1.174269914 1.200483224 1.181492085 83592226 terc Rhodospirillum rubrum ATCC 11170 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum rubrum; 0.817130446 0.79053599 0.859727417 0.812724239 0.83322143 0.792495677 378810499 amyA Mycobacterium intracellulare MOTT-64 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium intracellulare; 1.355463683 1.321366285 1.316810353 1.343837265 1.283431212 1.345550502 1.276389281 1.314808068 1.315417647 1.290725324 1.289690215 1.281160211 1.273595693 1.272826157 1.266783233 1.292662874 1.34131753 1.300704472 91697326 metc Polaromonas sp. JS666 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 1.101273012 1.099761894 1.050124762 1.101820889 1.063569892 1.08787737 1.061411374 1.05399742 1.076403736 1.075778329 1.060271879 1.082537185 1.047672314 1.05081435 1.050385226 1.029923515 1.121811602 1.084866294 54026830 ppx Nocardia farcinica IFM 10152 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 1.104264325 1.116049242 1.085021676 1.098094906 1.092718728 1.114440984 1.079520707 1.091554586 1.101234228 1.092566283 1.109095491 1.112210103 1.041809274 1.069026883 1.055356864 1.049323473 1.103034056 1.091006761 344338749 PRI Thiocapsa marina 5811 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiocapsa;species:Thiocapsa marina; 0.937234875 0.922964529 1.006342725 0.942445656 0.930170681 0.880609908 0.913024635 0.938884097 0.925047092 0.928765863 0.928144027 0.976311956 0.9187464 0.914572576 0.901361437 0.922558332 0.899082344 0.934224862 29160347 exoglucanase Exidia glandulosa Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Auriculariales;family:Exidiaceae;genus:Exidia; 0.875939418 0.887288818 0.926945494 0.929905884 0.911311353 0.957793154 0.873496802 0.833657319 0.908566089 0.872066985 0.84709433 0.888550171 0.923346024 0.890465712 0.945362112 0.905159176 0.977401595 0.85849942 387852213 acetylglucosaminidase Cronobacter sakazakii ES15 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Cronobacter;species:Cronobacter sakazakii; 0.776886605 0.79204869 0.78651389 0.839988919 328845501 ppx Brevundimonas diminuta ATCC 11568 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Brevundimonas;species:Brevundimonas diminuta; 0.782492446 0.899558699 0.840011991 0.814237857 0.850093847 0.866502428 0.789350674 0.777938064 0.806434575 340550633 nasa Collimonas fungivorans Ter331 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Collimonas;species:Collimonas fungivorans; 0.890909027 0.904256749 0.873022508 0.816962705 0.875009005 0.902244579 0.904488241 0.899028551 0.928114643 0.895794814 0.885260551 0.828997872 0.874123538 0.851060819 0.820101682 0.875005962 0.875747097 159881739 fccab Hydrogenivirga sp. 128-5-R1-1 Sulfur Sulfide Oxidation NA superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Aquificaceae;genus:Hydrogenivirga; 0.781127308 0.806821992 341615199 alkk Citromicrobium sp. JLT1363 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Citromicrobium; 1.071299383 1.095017134 1.047190334 1.071424418 1.040782078 1.065810171 1.019214113 1.067116717 1.073949594 1.039216217 1.020282514 1.056931368 1.027464992 1.025491795 0.992736969 1.029142347 1.091802791 1.08830216 223585996 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.875799332 0.839042772 0.848567109 0.787128938 170721162 mhpb Pseudomonas putida W619 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 0.927230211 0.910408815 0.918820989 0.981210398 0.88479293 0.91465174 0.898164034 0.936821714 0.928183204 0.935881052 0.886740064 0.929299471 0.905019812 0.887979159 0.927705259 0.94311677 0.955442881 0.908510822 296023164 ara Cellulomonas flavigena DSM 20109 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas;species:Cellulomonas flavigena; 0.897518611 0.920069974 0.914500584 0.937906249 0.915880394 0.927219326 0.883674715 0.938421309 0.914125445 0.905247368 0.908689915 0.921863179 0.885393665 0.883432884 0.85792121 0.881963548 0.888470593 0.946276071 68345516 one_ring_12diox Pseudomonas fluorescens Pf-5 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 1.122007737 1.080329791 1.049715879 1.11395709 1.045647524 1.069112532 1.068869564 1.091716292 1.095379178 1.075411182 1.065128956 1.099580292 1.021810241 1.03532293 0.983512981 1.050843217 1.096322731 1.079537189 55469835 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.095179579 1.085505587 1.128925505 1.068718828 1.099824405 1.105563639 1.11636062 1.104464261 1.105008235 1.097651583 1.090248377 1.095432693 1.075736817 1.032226608 0.998625335 1.050675845 1.085663177 1.087595275 380001337 amyA Deinococcus gobiensis I-0 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus gobiensis; 1.233193199 1.183647388 1.22562679 1.211642865 1.235348346 1.248880063 1.21747898 1.244848703 1.184557681 1.195006407 1.223769916 1.202880801 1.203511764 1.16741213 1.140745078 1.164629534 1.222540901 1.186497723 351683430 cysJ Rhodanobacter sp. 2APBS1 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Rhodanobacter; 1.122346488 1.279762552 1.07781476 1.061734427 1.086681011 1.072771343 1.046358975 1.060770033 1.014201735 1.070799388 1.026112411 1.081753422 1.041836158 1.024916963 0.990562162 1.038695754 1.028911225 1.0413932 121534441 dsrB Thermosinus carboxydivorans Nor1 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Thermosinus;species:Thermosinus carboxydivorans; 0.836795512 0.863425599 0.851842266 0.907928127 0.807033751 0.860660397 0.814333162 0.861785945 0.897439399 0.833488608 0.80987081 0.900169788 0.811117113 0.837205878 0.826072171 0.821645497 0.870346588 0.844168063 289503402 ccmL Anaerobaculum hydrogeniformans ATCC BAA-1850 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Synergistetes;class:Synergistia;order:Synergistales;family:Synergistaceae;genus:Anaerobaculum;species:Anaerobaculum hydrogeniformans; 0.86458672 0.812912958 0.869821629 0.870595392 0.814797008 0.861576654 0.87289919 0.873668371 0.871136725 0.821127854 0.809787815 0.86804801 0.860153537 0.835364654 0.820780783 0.893501472 0.890609952 365153123 oorA Campylobacter sp. 10_1_50 Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter; 1.103580529 1.014756535 1.057940959 1.020966532 1.020645851 1.077650537 1.042156455 1.050906476 1.04159728 1.050782671 1.032770663 1.028276188 1.030197671 0.963023499 0.92747163 0.982969732 1.058634702 1.098276796 62003577 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.863771126 0.887276351 0.868591504 0.872366047 0.898439853 0.853374248 0.871906361 0.875579582 0.859615783 0.890318658 0.86988016 0.86707379 0.868827154 0.865937693 0.806943011 0.849009232 0.895977687 0.894511669 162568595 aoxb uncultured bacterium Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 0.895708523 0.919854914 0.938811911 0.919932502 0.912682073 0.945552851 0.937517102 0.923273388 0.877993211 0.928639971 0.913559901 0.892374959 0.866832195 0.894783437 0.8437101 0.814985315 0.89068086 0.990937298 148642962 mcra Methanobrevibacter smithii ATCC 35061 Carbon Cycling Methane Methanogenesis superkingdom:Archaea;phylum:Euryarchaeota;class:Methanobacteria;order:Methanobacteriales;family:Methanobacteriaceae;genus:Methanobrevibacter;species:Methanobrevibacter smithii; 0.921584315 0.910554259 0.87788189 0.928371366 0.920266406 0.848408281 0.919695733 0.913061791 0.938484333 0.886334838 0.888411917 0.955197138 0.884201186 0.929582779 0.907168119 0.898759358 0.91976411 0.869848286 300692361 nhh Ralstonia solanacearum PSI07 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 1.150958118 1.040979942 1.04495904 1.070480509 1.08489029 1.102433378 1.081703098 1.073757626 1.060205722 1.056302824 1.077095401 1.039345059 1.05598952 1.021049603 0.972341192 1.005456107 1.06064761 1.028221057 84509361 xyla Loktanella vestfoldensis SKA53 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Loktanella;species:Loktanella vestfoldensis; 0.989389266 0.98817465 0.995984605 0.99960098 0.987381662 0.976639879 0.943040771 0.956388012 0.987980819 0.983899949 0.952242335 0.977066073 0.955022283 0.939478735 0.920072743 0.943300378 0.990340252 1.003356856 157404323 rd Dehalococcoides sp. VS Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 0.861150198 0.808447168 0.803456863 0.81470797 0.841129191 0.793235111 0.863226787 0.801200831 386689855 ppk Micromonospora lupini str. Lupac 08 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Micromonospora;species:Micromonospora lupini; 1.030284167 1.056112527 1.013856442 1.012339687 1.00654833 1.049527796 0.981486269 1.011697045 0.985769085 1.028195391 1.023168937 1.021304769 1.020558593 1.007616339 1.001560792 1.02526636 1.123170995 1.074097253 238718416 acetylglucosaminidase Yersinia mollaretii ATCC 43969 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia mollaretii; 0.999622228 0.973571628 1.007339563 0.9929708 1.030692093 1.015881146 0.995594604 0.967116746 0.987100653 1.055055141 1.003915532 1.000274596 0.963563111 0.954824356 1.009871701 0.956988193 0.956468128 0.970018652 384080537 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.850760078 0.813998944 161165251 pcpb Sorangium cellulosum 'So ce 56' Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 0.872817025 0.908328153 1.031604432 0.982755699 1.013637274 0.910790372 0.971194104 0.881033184 0.933249032 1.063979247 1.059733671 0.997693156 1.056170624 0.972998058 1.037908899 0.975626129 0.896547511 0.970899335 86608960 ppx Synechococcus sp. JA-2-3B'a(2-13) Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 0.88710281 0.826499413 0.787477055 0.898572138 0.840687695 0.836870482 0.834357008 0.852991019 0.893962096 0.84083068 0.861167428 0.812182343 0.789242292 291071687 one_ring_23diox Citrobacter youngae ATCC 29220 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter youngae; 0.932517788 0.906635419 0.929074462 0.924301183 0.910262391 0.892261502 0.905376666 0.905960949 0.883818412 0.92645887 0.89934982 0.9311521 0.873723097 0.840954161 0.831763093 0.885468567 0.932667482 0.903575803 311342196 phospholipase_C_fungi Arthroderma gypseum CBS 118893 Carbon Cycling Carbon degradation Phospholipids superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Arthrodermataceae;genus:Arthroderma;species:Arthroderma gypseum; 0.811650078 0.804088329 0.908123615 0.822818843 0.805970401 0.80743783 0.828899179 0.81786695 0.894864044 0.858839875 296283622 cysJ Citromicrobium bathyomarinum JL354 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Citromicrobium;species:Citromicrobium bathyomarinum; 0.889110347 0.952888357 0.955552785 0.912485096 0.841430291 0.847294334 0.829988485 0.823567418 0.880671165 0.904995568 0.914496571 0.839978059 0.883310552 0.895615033 0.869109891 1.059912128 0.909781547 316981076 nirk uncultured proteobacterium Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria; 1.048071807 1.044374893 1.004081616 1.057708774 1.003042951 1.04012093 1.014046273 0.989132774 1.01746641 1.021441007 1.002747217 1.019641829 0.970102145 0.980636632 0.965166657 0.957190153 1.024585694 1.01512037 226428749 xyla Geobacillus caldoxylosilyticus Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 0.955311078 0.9618458 0.957308607 0.972015399 0.941362721 0.950758309 0.941789334 0.981406951 0.968129462 0.9664239 0.931244481 0.976768115 0.933358201 0.925613958 0.927272663 0.94449849 0.968026218 0.987882163 229591161 tktA Pseudomonas fluorescens SBW25 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 0.909304273 0.931814235 0.940750276 0.94490373 0.933718354 0.936261621 0.909145986 0.875505295 0.940306476 0.965958675 0.894750251 0.934020846 0.885047619 0.898315812 0.771701168 0.822403765 0.911322989 0.917553113 296446581 PRI Methylosinus trichosporium OB3b Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylocystaceae;genus:Methylosinus;species:Methylosinus trichosporium; 0.948711774 0.973336053 0.911182242 0.910306301 0.919611724 1.052479758 0.921232446 0.937197486 0.925212979 0.93002201 0.874216104 0.909136116 0.906185209 0.926888445 0.899986728 0.911231104 0.98624447 0.9272705 332013235 pcag Sphingomonas sp. S17 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 1.164107964 1.128964373 1.120515533 1.144641348 1.15599336 1.167034204 1.117075363 1.086511721 1.139328179 1.120331704 1.076457731 1.136496593 1.112348252 1.103300251 1.111698838 1.115152174 1.226933842 1.149166816 389721304 urec Acinetobacter sp. HA Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 0.94910462 0.896331724 0.926012741 0.976409203 0.935303713 0.909057728 0.92792706 0.910480657 0.938317811 0.937021169 0.895488756 0.907752624 0.865236789 0.837026793 0.839452957 0.870443504 0.929510482 0.947829312 214037051 FBP_aldolase marine gamma proteobacterium HTCC2148 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 0.806997716 0.794401786 0.832994907 0.939098265 0.821500802 0.799600371 0.803598348 0.875535728 0.900335371 0.862327652 0.877111968 0.882962437 0.837800677 0.770227737 0.818167684 338171584 tmoabe Cupriavidus necator N-1 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 0.766190896 0.792665268 0.811717735 29466074 norb uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.879243209 0.826303803 0.816707708 0.811968192 0.814687632 0.807330832 0.794744468 0.801136385 23492827 badh Corynebacterium efficiens YS-314 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium efficiens; 1.056565299 1.077541211 1.05930512 1.04924573 1.000027231 1.022222499 1.007780559 1.03652043 1.046752434 1.065919442 0.959330396 1.026757027 0.962022146 1.001681563 0.9147716 0.983112038 1.060320978 1.079208875 302879703 PRI Gallionella capsiferriformans ES-2 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Gallionellales;family:Gallionellaceae;genus:Gallionella;species:Gallionella capsiferriformans; 1.052457377 0.795295424 0.874659729 0.809200437 121528959 chnb Ralstonia pickettii 12J Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 1.036542282 0.998966952 1.02682195 1.0487465 0.998737989 1.022280675 1.033794438 1.028480193 1.018125863 1.017754076 1.015497785 1.030265679 0.983941128 0.95983905 0.949139158 0.977581217 1.008340661 0.995899343 206686013 xlnd Rhodobacterales bacterium Y4I Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 0.796076722 0.8301778 0.84511127 0.824784346 0.843594967 0.823900953 0.843329488 0.854415308 0.841163398 0.844383101 0.85818006 0.829460908 0.791384449 0.850861689 0.825169197 0.802955344 0.825045856 83860065 alkk Oceanicaulis alexandrii HTCC2633 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Oceanicaulis; 1.292260032 1.290248259 1.289959365 1.313367893 1.309091374 1.301294469 1.275614232 1.313601332 1.284393141 1.270931503 1.265862744 1.307174902 1.281005543 1.258323592 1.28486321 1.279470275 1.28451967 1.260574734 121606726 pchcf Polaromonas naphthalenivorans CJ2 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 0.769545589 0.797668526 0.84097222 0.883118336 0.820211612 0.835918256 0.876700954 0.886368843 0.812024474 0.845868424 0.822090535 0.875765342 0.824650238 0.783363854 99030545 ppk uncultured bacterium Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria; 1.178239827 1.15891653 1.123607437 1.165153382 1.117833426 1.155665872 1.136380992 1.140666958 1.155684962 1.159010159 1.110244433 1.164952542 1.087954099 1.118604547 1.095185 1.116474331 1.161959667 1.158714794 356659052 xylg Rhodococcus opacus PD630 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus opacus; 1.311193544 1.272229739 1.272867995 1.269503283 1.284556883 1.292951063 1.287055596 1.300844202 1.274429634 1.260509745 1.254450414 1.292531555 1.229466512 1.261511123 1.288772403 1.299456941 1.21964187 1.25557767 620120 alginase Pseudomonas alginovora Carbon Cycling Carbon degradation Alginate superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.824208167 0.843462168 0.828584533 0.839493774 0.841743031 0.841754823 0.82342112 0.840450864 0.882928023 0.80164744 0.845946087 0.76244861 0.810772867 167896555 poba Burkholderia pseudomallei 7894 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia pseudomallei; 0.86263871 0.83984458 0.883396052 0.846511649 0.800604056 0.8382012 0.854369011 0.875199589 0.82353887 229818682 ara Beutenbergia cavernae DSM 12333 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Beutenbergiaceae;genus:Beutenbergia;species:Beutenbergia cavernae; 1.37149572 1.339121914 1.331915725 1.334734327 1.321035388 1.373958026 1.313338924 1.314718269 1.319107097 1.328545246 1.317014184 1.323270482 1.304875311 1.278893606 1.287899272 1.301457117 1.341549402 1.314139839 88919495 nhh Acidiphilium cryptum JF-5 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acidiphilium;species:Acidiphilium cryptum; 1.202259255 1.172247912 1.152833242 1.197166147 1.138983356 1.191492994 1.138042571 1.181615615 1.166777553 1.167887469 1.150244722 1.176459217 1.122426601 1.154924727 1.121617599 1.160489966 1.200726508 1.158418351 323395633 amyA Planococcus donghaensis MPA1U2 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Planococcaceae;genus:Planococcus;species:Planococcus donghaensis; 0.804441317 0.839856313 0.815895017 0.842783557 0.806801281 0.828495131 0.848684751 0.831283215 0.832328023 0.817667842 0.809331093 0.820609049 0.786556614 126459395 AACT_DiC4HB Pyrobaculum calidifontis JCM 11548 Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum calidifontis; 0.829492645 0.930437649 0.862163034 0.884287228 0.919341391 0.853315339 0.875505211 0.906278882 0.937554645 0.88706655 0.879697355 0.890599823 0.846780879 0.883969599 0.835427504 0.859940717 0.893890672 0.941957067 154245856 FBP_aldolase Xanthobacter autotrophicus Py2 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 1.111667861 1.111887879 1.131925458 1.113320271 1.061488139 1.090028122 1.070138172 1.083222971 1.096637766 1.123753014 1.072372025 1.126518614 1.071338443 1.065414029 1.0832321 1.055935257 1.107514796 1.094752308 192897618 ppk uncultured bacterium Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria; 0.946815398 0.991055268 0.909624378 0.964891923 0.880827506 0.919968844 0.932657229 0.969838327 0.949154275 0.965437244 0.885030711 0.930921022 0.89076888 0.944009005 0.906900556 0.953634873 0.998332118 145591423 mer Pyrobaculum arsenaticum DSM 13514 Metal Homeostasis Mercury Detoxification superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum arsenaticum; 1.258706019 1.176777353 1.208541402 1.246673607 1.217690864 1.230792549 1.203732088 1.253273997 1.210522158 1.188149034 1.208812462 1.205039457 1.205947118 1.141579514 1.148629278 1.189953901 1.257123879 1.159044693 22252768 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.333553222 1.290112704 1.292403212 1.327794975 1.311514794 1.290032643 1.2835882 1.285334625 1.29025777 1.310671473 1.325270778 1.360097829 1.241776935 1.238049764 1.233013422 1.262063376 1.307526475 1.254621629 349687857 cysJ Gluconacetobacter oboediens 174Bp2 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter oboediens; 1.192467274 1.215981321 1.202730729 1.110399716 1.164476898 1.209154996 1.16413886 1.145862793 1.105232966 1.177085145 1.17711968 1.17713983 1.147583486 1.141685727 1.128024519 1.179162003 1.170629296 1.18396609 88698879 GAPDH_Calvin Congregibacter litoralis KT71 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Congregibacter;species:Congregibacter litoralis; 0.898551638 0.925179669 0.931427146 0.893188813 0.918481092 0.941757477 0.944058876 0.869694065 0.864024329 0.981246242 0.962631747 0.921583169 0.895502578 0.940396263 0.877350314 0.852578989 0.944407667 0.947700104 73763060 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.840104677 0.94097151 0.853336953 0.88215819 0.899878964 0.922463857 0.875029035 0.882987568 0.915762186 0.916782475 0.887385901 0.928088738 0.840603784 0.911208329 0.865730869 0.851863543 0.889812004 0.93250709 289208250 arylest Thioalkalivibrio sp. K90mix Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio; 0.823892648 0.781447006 0.818268164 0.833827911 311322160 pec_Cdeg Pyrenophora teres f. teres 0-1 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora teres; 0.923098024 0.917792154 0.930282804 0.971857095 0.928510889 0.969016079 0.905920166 0.943257953 0.928815068 0.991832026 0.93460278 0.928937192 0.86780456 0.935929423 0.88387882 0.854334544 0.911885869 0.946976588 219863675 phytase Cyanothece sp. PCC 7425 Phosphorus Phytic acid hydrolysis NA superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 0.946548207 0.957925462 0.89421959 0.984739523 0.860158329 0.9419784 0.836592447 0.872349215 0.982072842 0.928970036 0.863407252 0.898388827 0.883092001 0.893288383 0.881891393 0.958587938 0.966237665 109290294 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.203891367 1.177943211 1.177770191 1.205490174 1.189203863 1.189216739 1.157761564 1.174486725 1.193450357 1.157545517 1.162487711 1.17351076 1.162626566 1.125691912 1.128705539 1.120357165 1.17673354 1.161253831 311818592 nitrate_reductase Volvox carteri Nitrogen N Assimilation NA superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Chlorophyceae;order:Chlamydomonadales;family:Volvocaceae;genus:Volvox; 0.966779958 0.928173009 0.951634502 0.967645707 0.956871527 0.931974255 0.951114576 0.978652139 0.957837282 0.918489538 0.860591791 0.894212426 0.830129746 0.846618042 0.801103332 0.955164144 0.963916349 359278517 pgk Synechocystis sp. PCC 6803 substr. PCC-P Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechocystis;species:Synechocystis sp. PCC 6803; 0.92323355 0.948125468 0.87211691 0.918415977 0.923519909 0.899397012 0.908274797 0.884487887 0.886979952 0.911210576 0.884743231 0.921349983 0.908378952 0.918240593 0.889224135 0.908187814 0.91495047 0.906168117 297198814 pectinase (pectate_lyase) Streptomyces sviceus ATCC 29083 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 0.888910578 0.879091647 0.871490527 0.847449865 0.840519869 0.833598384 0.844717562 0.816990869 0.882918077 0.840230083 0.794501024 0.873475275 0.870309466 226095137 chitinase Brevibacillus brevis NBRC 100599 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Brevibacillus;species:Brevibacillus brevis; 1.050323773 1.016630014 1.026800469 1.037546074 0.965807412 1.00698817 0.985043892 0.993223945 1.051339075 0.991022788 0.975617259 1.031971889 0.984617537 0.953162382 0.956053229 1.001980044 1.031924293 1.00047523 340778622 vana Acetobacter aceti NBRC 14818 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acetobacter;species:Acetobacter aceti; 0.930352439 1.006017961 0.937506606 0.987485302 0.936507275 0.935957334 0.890221886 0.941606678 0.963320828 0.921413998 0.882365764 0.918750307 0.900363031 0.900507704 0.868766259 0.911547622 0.957859378 0.924181772 84517059 dehh109 Loktanella vestfoldensis SKA53 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Loktanella;species:Loktanella vestfoldensis; 0.784238412 0.831831841 0.805212159 0.819782536 0.820717189 0.876616646 0.828633888 57160024 endochitinase Thermococcus kodakarensis KOD1 Carbon Cycling Carbon degradation Chitin superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Thermococcus;species:Thermococcus kodakarensis; 0.87887003 0.799227339 0.834909875 0.864735757 0.852441014 0.818751701 0.886865067 0.810528786 12484399 phenol_oxidase Coriolopsis gallica Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Coriolopsis; 0.793068899 0.800509696 0.800461516 0.800598448 0.793081934 0.831816289 0.795185137 0.78094514 0.833829975 0.782669172 0.82774468 330960974 amyA Pseudomonas syringae pv. maculicola str. ES4326 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 0.814041348 0.796330749 0.783946131 0.811022328 397847 hbh Pseudomonas sp. Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria; 1.028302591 0.97384325 1.040088563 1.029710772 1.015423549 1.064919237 0.99697411 1.025499182 1.016446999 1.026665864 1.024253307 1.030645654 0.978555652 1.029948978 1.013975229 1.009222088 1.055440054 1.011280766 91786893 vana Polaromonas sp. JS666 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 0.967792459 0.871262126 0.942467637 0.959271838 0.907025584 0.923127239 0.908540941 0.915196244 0.946056366 0.917270639 0.978939639 0.963490025 0.871258381 0.871258528 0.798300803 0.857035035 0.948583977 0.832620358 397321096 b_lactamase Rhizobium sp. CF142 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 0.823262508 0.815548699 170731211 ppx Xylella fastidiosa M12 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xylella;species:Xylella fastidiosa; 0.913505205 0.91686668 0.871383603 0.958492104 0.904004234 0.843211303 0.901003094 0.914230808 0.931691271 0.896653697 0.885405595 0.796252208 0.851745434 0.823802933 0.891975283 0.929625392 0.912969871 138754346 mcra uncultured archaeon Carbon Cycling Methane Methanogenesis superkingdom:Archaea; 1.010627569 0.988971367 0.976835849 0.978581179 1.038158158 1.105445451 0.990615739 0.940540746 0.971239254 1.055844916 1.079875929 1.018714642 1.037217514 0.949824583 0.964176252 0.932721084 1.022063716 1.026643459 357201743 fthfs Paenibacillus terrae HPL-003 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus terrae; 0.887406092 0.95483273 0.916033484 0.899666519 0.886346079 0.944735354 0.853391201 0.848422483 0.86207431 0.89550952 0.899467843 0.898560165 0.890224636 0.90935444 0.930376145 0.878034149 0.929173551 0.92037816 179344945 Sir Methylobacterium populi BJ001 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium populi; 0.908641055 0.931585395 0.936874527 0.914032628 0.908581444 0.908323923 0.862968098 0.88855908 0.885134039 0.923622121 0.924915556 0.897287116 0.901815876 0.880402342 0.851756218 0.873213811 0.912294073 0.90633161 114321987 GAPDH_Calvin Alkalilimnicola ehrlichii MLHE-1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Alkalilimnicola;species:Alkalilimnicola ehrlichii; 1.102175471 1.156442495 1.072432613 1.109955818 1.122821259 1.162235413 1.113303711 1.091014998 1.094081905 1.109276965 1.084703453 1.112212151 1.091308135 1.102507649 1.110397576 1.087673344 1.104684119 1.095755074 422314499 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.055781571 1.043942243 1.019784862 1.040606452 1.083984061 1.033168588 1.031373901 1.029613123 1.077533286 1.05145769 1.040559072 1.049232066 1.055122002 0.98914611 0.969608531 0.969318661 1.034507456 1.033315687 15074631 tktA Sinorhizobium meliloti 1021 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium meliloti; 0.932698674 0.885470416 0.91816179 0.898187262 0.996244756 0.906045512 0.946173071 0.90531977 0.899244862 0.960297561 1.03397553 0.933883005 0.991755886 0.875379625 0.895066422 0.87321176 0.928374369 0.929136581 317504887 pula Prevotella salivae DSM 15606 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella salivae; 0.784731062 0.869239076 0.809818956 0.86608752 0.854457321 0.900620397 0.812718567 0.844940027 0.836397334 0.918493328 0.825398056 0.861647477 0.935941201 0.881371781 0.825147114 0.856127669 0.857686522 0.882012155 55978088 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.841869366 0.908512403 0.910133948 0.837394064 0.924175058 0.908869359 0.881906536 0.855553143 0.905990285 0.882037233 0.899320465 0.831596231 0.815268721 0.85960091 0.855323202 0.913633172 146403708 soxY Acidiphilium cryptum JF-5 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acidiphilium;species:Acidiphilium cryptum; 0.949565413 0.974891286 0.909303726 1.001011342 0.980714027 0.938012356 0.968020308 0.92047658 0.989112296 0.979567271 0.982955461 0.956014038 0.979718514 0.992356979 0.886759543 0.951503007 0.951878316 1.00276186 218294900 fccab Thermus aquaticus Y51MC23 Sulfur Sulfide Oxidation NA superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus;species:Thermus aquaticus; 0.958900826 0.905315648 0.94420522 0.963875699 0.926154092 0.919442856 0.897549077 0.943739422 0.930230575 0.905902715 0.935566541 0.953068495 0.888007775 0.926225961 0.86113946 0.905960124 0.997106778 0.907194446 82791415 alkb uncultured bacterium Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria; 0.880752887 1.00312592 0.831797701 0.857714593 0.977639754 0.82800596 0.974066366 0.912791077 0.922594422 0.841363787 0.991123389 1.024362482 1.096475319 0.947965482 0.961746335 339328246 poba Cupriavidus necator N-1 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 0.935109542 0.927869226 0.858755085 0.943119639 0.872699769 0.934514643 0.909296805 0.915797558 0.930327064 0.916965636 0.870527543 0.917388401 0.882010352 0.881982101 0.863557072 0.918340712 0.905619683 0.947558636 93353131 arsm Cupriavidus metallidurans CH34 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 1.113403994 1.097924693 1.077592488 1.093606509 1.006238764 1.051111404 1.031562313 1.074977382 1.106426194 1.075372875 0.986533656 1.064646364 0.982067644 1.013025841 0.971514577 0.998611512 1.109139289 1.106413512 214030412 cysI Ruegeria sp. R11 Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 0.913363135 0.90430525 0.867106279 0.910327212 0.857708662 0.897409774 0.872294718 0.897084697 0.912091775 0.871367682 0.859144701 0.919021159 0.869535548 0.88073797 0.843837188 0.903343777 0.905975403 0.915795483 300780907 gdh Corynebacterium genitalium ATCC 33030 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium genitalium; 0.882522473 0.882196845 0.873433142 0.851530533 0.831109871 0.858593618 0.870809307 0.847753768 0.901008496 0.849707928 0.818428666 0.90346919 0.871176361 0.862597741 0.898065819 325106427 RgaE Pedobacter saltans DSM 12145 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Pedobacter;species:Pedobacter saltans; 0.759501979 0.840090774 0.815091415 0.849225462 0.842690069 0.8313808 0.830703043 0.860379309 0.808086712 0.828270002 0.877996795 0.76969064 0.838568432 238852119 protease_aspartate_fungi Clavispora lusitaniae ATCC 42720 Carbon Cycling Carbon degradation protein superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Metschnikowiaceae;genus:Clavispora;species:Clavispora lusitaniae; 0.838398966 0.825544774 119116094 bphc uncultured bacterium Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria; 1.049762405 1.055862072 1.078507826 1.140253121 1.073756651 1.025467959 1.058977901 1.092556711 1.053450648 1.049017204 1.041943316 1.077509429 1.075872322 1.028141831 1.05322149 1.038517686 1.07771267 1.021794337 387970482 ppx Pseudomonas stutzeri TS44 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 0.876272225 0.944601794 0.865890082 0.908036731 0.859599672 0.900153384 0.864165755 0.870399536 0.883702487 0.899172658 0.894446667 0.907726225 0.901337205 0.931202549 0.907555621 0.913984022 0.962780304 148843194 linb Planctomyces maris DSM 8797 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Planctomyces;species:Planctomyces maris; 0.843402483 0.815375055 0.819229227 0.820237195 284052227 CsoS1_CcmK Arthrospira platensis str. Paraca Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Arthrospira;species:Arthrospira platensis; 1.075305916 1.090782863 1.103470125 1.104315358 1.1381625 1.120469435 1.090986453 1.109913791 1.102256228 1.085504701 1.075654936 1.12147648 1.057937405 1.074568138 1.05630031 1.064417198 1.081072547 1.097228146 89084403 terc Bacillus sp. NRRL B-14911 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 0.802274166 0.838734296 0.865894255 0.874939388 0.811467129 0.822579062 0.848053817 0.883164463 0.870126528 0.82481085 0.830813036 303276651 mg_chelatase Micromonas pusilla CCMP1545 Secondary metabolism Pigments Chlorophyll superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Mamiellophyceae;order:Mamiellales;genus:Micromonas;species:Micromonas pusilla; 0.983516966 1.00964631 0.96146503 0.972414347 0.966468824 0.987449688 0.905051248 0.901866387 0.822503791 0.940430614 0.859377533 0.91078221 0.916955232 0.899309925 0.878784627 0.897455449 0.995580278 242207853 p450aro Postia placenta Mad-698-R Organic Remediation Aromatics polycyclic aromatics superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Postia;species:Postia placenta; 1.285720346 1.253050316 1.221765131 1.273573112 1.20987285 1.25799315 1.202387989 1.219333731 1.241943838 1.223511782 1.194838391 1.240828357 1.207088532 1.185858757 1.15361917 1.221366304 1.264636001 1.223127994 334687096 amyA Microlunatus phosphovorus NM-1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Microlunatus;species:Microlunatus phosphovorus; 1.009570501 1.022818676 1.006741475 1.033489072 1.061445843 1.04983202 1.067085016 1.07180861 1.042856829 1.087707445 1.046478459 1.039968317 1.005719868 1.020053656 0.978515764 1.017890194 1.05929803 1.039737749 422314349 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.996044408 1.006580259 0.999789512 1.01422721 1.012277979 1.015247623 1.001963199 1.004719876 0.998329682 1.018857436 1.005463029 0.984183377 0.944734598 0.913661703 0.934944087 0.921442538 1.004960191 0.96285312 371952963 amyA Prevotella maculosa OT 289 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella maculosa; 0.876999884 0.874237865 0.892023836 0.866045751 0.856257226 0.81554294 0.825071399 0.849654819 0.886084232 0.80859722 0.905741674 0.818066321 0.851250203 0.818374803 0.841033465 0.873528825 0.918628178 408527397 poba Streptomyces davawensis JCM 4913 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces davawensis; 1.216462157 1.220497155 1.202713118 1.202329241 1.209094097 1.235258432 1.204739156 1.20561602 1.199173216 1.196813203 1.197426744 1.213244186 1.156474902 1.152658202 1.142779873 1.133454955 1.207069593 1.216926106 126710415 GAPDH_Calvin Sagittula stellata E-37 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 0.768798409 0.843666866 0.821369701 0.86850386 334364886 cda Alistipes sp. HGB5 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Rikenellaceae;genus:Alistipes; 1.314137879 1.287560613 1.293391632 1.307421501 1.279607497 1.295768556 1.270075633 1.294077922 1.28577367 1.265797499 1.278198159 1.284697453 1.253080357 1.212907669 1.229028888 1.240365882 1.302296469 1.267290276 224037824 phenol_oxidase Ganoderma lucidum Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Ganodermataceae;genus:Ganoderma; 1.088228664 1.028511678 1.083403995 1.129331884 1.084247897 1.096356413 1.082800197 1.116288534 1.098943759 1.053231799 1.088897448 1.080185103 1.086997934 1.030574474 1.032151645 1.036525679 1.130331679 1.046853416 88800613 mer Reinekea sp. MED297 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Reinekea;species:Reinekea blandensis; 1.119095342 1.110024783 1.123411173 1.093974838 1.108323028 1.141411382 1.107775882 1.053532866 1.100580046 1.163539364 1.103858249 1.09539074 1.068435647 1.093713599 1.059618952 1.133603584 1.147801323 1.152172109 359832716 mer Actinoplanes sp. SE50/110 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes; 0.94336292 0.930703176 0.96568443 0.955451136 0.907802076 0.926266761 0.909420196 0.928911337 0.947407772 0.942383958 0.881520705 0.905961572 0.877468233 0.909119735 0.892601794 0.907533203 0.945005361 0.972057999 388242972 arsc Haloferax mediterranei ATCC 33500 Metal Homeostasis Arsenic Detoxification superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloferax;species:Haloferax mediterranei; 0.837257665 0.841422646 0.870082198 0.835265816 0.862022387 0.862951909 0.873991685 0.851160182 0.792229046 0.832812289 380302280 amyA Brachybacterium squillarum M-6-3 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dermabacteraceae;genus:Brachybacterium;species:Brachybacterium squillarum; 0.889482139 0.902212414 0.992044849 0.910942662 0.927380842 0.911847996 0.908787029 0.910738672 0.901813759 0.882392423 0.961707366 0.887516426 0.86776873 0.794476233 0.790552975 0.849597751 0.877527049 0.890930026 385676113 chnb Amycolatopsis sp. ATCC 39116 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis; 1.056532239 1.115103985 1.033812422 1.117961816 1.093028492 1.07818102 1.080683854 1.068542121 1.074922008 1.079422428 1.051092079 1.131400331 1.035548131 1.051152788 1.016089554 1.042602731 1.067104474 1.083254415 3184044 one_ring_23diox Ralstonia sp. JS705 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 1.180853193 1.156431687 1.151174436 1.190174625 1.162131199 1.165436306 1.150189884 1.185576358 1.152347055 1.154225527 1.11391267 1.160163409 1.121564612 1.137523189 1.144014535 1.114382532 1.144527553 1.137648166 241362646 pgk Acidovorax delafieldii 2AN Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax delafieldii; 1.180924957 1.12564319 1.085650389 1.13023477 1.137504895 1.078588505 1.088103188 1.212908768 1.134981269 1.058381389 1.02314466 1.079951187 1.060301905 1.047695017 1.04125263 1.026747587 1.110625078 1.099485702 114328503 amie Granulibacter bethesdensis CGDNIH1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Granulibacter;species:Granulibacter bethesdensis; 0.936048835 0.880646545 0.966105415 0.987287279 0.934850486 0.95817854 1.015022334 0.957500849 0.964202871 0.940897995 0.960697224 0.92984132 0.937432674 0.870513289 0.919739216 0.894699775 0.983046663 0.914215574 209486343 mcra uncultured archaeon Carbon Cycling Methane Methanogenesis superkingdom:Archaea; 0.851259353 0.82723254 0.81760984 0.835543405 0.885913686 0.882345468 0.876966862 0.86809056 0.84444492 0.828548814 0.840676521 0.858023675 206602150 ccl Leptospirillum sp. Group II '5-way CG' Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle superkingdom:Bacteria;phylum:Nitrospirae;class:Nitrospira;order:Nitrospirales;family:Nitrospiraceae;genus:Leptospirillum; 0.829708773 0.843428593 0.848916981 0.870592221 0.848386813 0.84882353 0.873876635 0.8699825 0.873808856 0.866767595 0.905083025 0.865533032 0.816615956 289530597 alkk Natrialba magadii ATCC 43099 Organic Remediation Others NA superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Natrialba;species:Natrialba magadii; 1.074875057 1.035516176 1.034623203 1.031998768 0.993044601 1.029091287 1.019464192 1.032469306 1.004918061 1.018619522 1.030833453 1.053855436 0.976125642 0.992578561 0.980599324 0.994806552 1.072310461 1.044271064 311113716 fthfs Rothia dentocariosa ATCC 17931 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Rothia;species:Rothia dentocariosa; 0.902530558 0.916854907 0.896426998 0.801202878 0.85371997 0.854133984 0.863522302 0.852931467 0.863730858 0.881405377 0.787358086 0.842819943 0.843279099 0.879637679 0.926816139 119465846 FBPase Nodularia spumigena CCY9414 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nodularia;species:Nodularia spumigena; 1.024773369 0.910220948 0.949218925 0.923526207 0.877970225 0.934479977 0.88778154 0.943076761 0.938056258 0.896615053 0.889512218 0.923583688 0.867612284 0.889306883 0.898121603 0.925537964 0.925821311 0.941449026 126722232 bphd Rhodococcus rhodochrous Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 0.824236253 0.824354047 319756202 amyA Deinococcus maricopensis DSM 21211 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus maricopensis; 0.983153785 0.941391919 1.00787217 1.007841107 0.926377759 0.911109804 0.910413381 0.918633551 0.948880876 0.998327393 0.985802528 0.984183223 0.976730711 0.929737903 0.972188021 0.934239998 0.983511242 0.959914869 269793958 xyla Sanguibacter keddieii DSM 10542 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Sanguibacteraceae;genus:Sanguibacter;species:Sanguibacter keddieii; 1.064271039 1.068710217 1.056844639 1.047118974 1.086627413 1.085903365 1.037054884 1.030980594 1.019436726 1.066267978 1.042133783 1.025617839 1.044021309 1.031306662 1.033406236 1.004907467 1.054817897 1.065542122 407058892 nosz Oceaniovalibus guishaninsula JLT2003 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceaniovalibus;species:Oceaniovalibus guishaninsula; 1.054977874 1.0512734 1.039913562 1.043015647 1.070762348 1.07819245 1.067295839 1.058370309 1.022450552 1.052905044 1.039696908 1.043021438 1.049332372 1.020842726 1.003242167 1.002801831 1.053118594 1.054920086 395548351 terc Actinomyces sp. ICM47 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces; 0.966996267 0.948064899 0.882437608 0.974054605 0.964485513 0.965758063 0.897453628 0.919995802 0.932451663 0.924529093 0.85910246 0.948337778 0.954073343 0.912847302 0.914892083 0.882777355 1.135084951 0.887164907 309790321 cda Oscillochloris trichoides DG6 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Oscillochloridaceae;genus:Oscillochloris;species:Oscillochloris trichoides; 0.972477159 0.969128264 0.943378775 0.947101102 0.980611774 0.986529279 0.970051494 0.973816939 0.961125488 0.976281689 0.974288664 0.948450106 0.918820656 0.919477023 0.810067353 0.934082083 0.927608944 0.929692607 347993059 amyA Aggregatibacter actinomycetemcomitans serotype e str. SC1083 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Aggregatibacter;species:Aggregatibacter actinomycetemcomitans; 0.865782288 0.811151 0.89742319 0.857313398 0.81145659 0.809645604 0.811399046 0.817176812 160706444 glx Phaeosphaeria nodorum SN15 Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Phaeosphaeriaceae;genus:Phaeosphaeria;species:Phaeosphaeria nodorum; 0.995645387 0.983775235 0.94798705 0.974553722 0.988840191 0.959641688 0.925558261 0.940362677 1.004487244 0.943244057 0.922931604 0.988272452 0.950126327 0.947499554 0.92974226 0.955218716 0.978844527 0.976563946 295110902 ppx Synergistetes bacterium SGP1 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Synergistetes; 0.832184691 0.847209925 0.816497732 0.870666817 0.855760525 0.834615845 0.814322419 0.811540563 0.843118303 0.812732583 0.798527295 0.808537852 0.830990164 0.902773754 0.895215173 212533607 lactase_fungi Penicillium marneffei ATCC 18224 Carbon Cycling Carbon degradation Lactose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 0.798051149 0.817415177 0.807613754 0.811679922 0.848580673 0.865230176 0.840748105 0.811210389 0.816499434 0.841566631 0.852335647 295688549 chnb Caulobacter segnis ATCC 21756 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter segnis; 0.862062485 0.879858802 0.847514975 0.881568758 0.914496931 0.931294514 0.869016448 0.858010006 0.859539008 0.805354498 0.866957796 0.816141903 0.811491085 0.875754661 0.890221425 84393644 ppx Vibrio splendidus 12B01 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio splendidus; 0.855448405 0.848292172 0.842044431 0.825293092 0.824718191 0.858285791 0.828586944 0.832731871 0.800953372 0.794634762 0.86694265 0.836187856 0.879088296 333480912 bphF1 Amycolicicoccus subflavus DQS3-9A1 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Amycolicicoccus;species:Amycolicicoccus subflavus; 0.866954778 0.907633698 0.849200104 0.878778969 0.892369196 0.919199245 0.857740437 0.905741909 0.906466015 0.820051883 0.915882321 0.912208465 0.884573667 0.879985764 0.90775798 0.911406023 0.935276087 0.974162093 91203274 glucoamylase Candidatus Kuenenia stuttgartiensis Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Candidatus Brocadiales;family:Candidatus Brocadiaceae;genus:Candidatus Kuenenia; 0.954113737 0.950542854 0.922306327 0.979277942 0.892634558 0.93898437 0.918125377 0.93125103 0.938792299 0.945623338 0.885909117 0.954831889 0.862646992 0.916525011 0.8591984 0.900476686 0.943456152 0.948143539 313117089 chitinase Halogeometricum borinquense DSM 11551 Carbon Cycling Carbon degradation Chitin superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halogeometricum;species:Halogeometricum borinquense; 0.858619624 0.832291337 0.842316116 0.799216299 0.786742966 0.817147196 0.798579565 0.806366638 0.862851129 0.806097166 0.855177659 0.770247637 0.828914981 0.802712039 0.820005284 76577464 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.874100321 0.855075234 0.999482216 0.894119423 0.961072943 0.916184478 0.982690069 0.970688456 0.830423602 0.806214137 0.904622741 0.985435732 0.913486034 0.961219731 254449752 cysI Octadecabacter antarcticus 238 Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter arcticus; 0.934335407 0.866986105 0.937097985 0.92027981 0.88131528 0.871467217 0.908950304 0.929398493 0.917927446 0.876992167 0.923617932 0.932556482 0.874136883 0.843977938 0.852467153 0.84448156 0.890624316 0.890919489 322718535 phenol_oxidase Flammulina velutipes Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Physalacriaceae;genus:Flammulina; 1.002949946 0.929453475 0.951528727 0.956891611 0.987924734 0.965352488 0.996139363 0.958287837 0.984016597 0.957710108 0.983150786 0.947324616 0.885070376 0.825748028 0.842637393 0.922890293 0.9078492 0.954812195 378781462 linb Blastococcus saxobsidens DD2 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Geodermatophilaceae;genus:Blastococcus;species:Blastococcus saxobsidens; 0.839185365 0.897260772 0.825535097 0.824806105 0.826831353 0.80579205 0.858453849 0.785752219 0.843783762 0.821305174 0.832718965 0.814711048 0.862081103 307770624 PRK Roseibium sp. TrichSKD4 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseibium; 0.809779052 0.788288151 0.806784973 0.849431535 0.809140639 0.825806823 124111051 tutfdg uncultured bacterium Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria; 1.152268942 1.165549342 1.131308037 1.154219603 1.109215723 1.163258597 1.135984078 1.145781006 1.133820691 1.143852848 1.128052215 1.155255028 1.100434656 1.098706941 1.053046454 1.105324762 1.152186053 1.152787806 115371535 phenol_oxidase Coprinopsis cinerea okayama7#130 Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 1.037952912 1.006609108 1.120642644 1.130409893 1.183540491 1.121400615 1.1364221 1.071622757 1.048509676 1.09414339 1.109264304 1.107225145 1.054886072 1.104086911 1.104855911 1.066781209 1.033104838 1.054458086 346644397 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.916479315 0.838784575 0.833226864 0.868195012 0.838281801 0.831959859 0.825857171 0.841817407 0.801915266 0.855387444 0.822455868 0.834167019 0.884221694 309812290 nirb Dermacoccus sp. Ellin185 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dermacoccaceae;genus:Dermacoccus; 0.894781863 0.916942854 0.918049976 0.894247186 0.859186295 0.895357649 0.869191302 0.880357038 0.873242213 0.885484193 0.880037882 0.842365272 0.8293069 0.823491733 0.845212296 0.842305269 0.898846583 0.919689348 149143139 phn Roseovarius sp. TM1035 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 1.223964135 1.192751603 1.136863606 1.189959243 1.148850667 1.214130319 1.139152821 1.156944361 1.16290289 1.180636615 1.172094029 1.160552143 1.128127471 1.152048213 1.109859675 1.170500183 1.195468872 1.206224022 83773727 ara Aspergillus oryzae Carbon Cycling Carbon degradation Hemicellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 1.398505567 1.372245321 1.368255545 1.412751492 1.363826008 1.356243593 1.345112445 1.365439754 1.378925519 1.356718536 1.360873647 1.38914083 1.331929376 1.300858036 1.325651174 1.339379367 1.380555818 1.324341508 121554404 TIM Verminephrobacter eiseniae EF01-2 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 1.176840974 1.149673597 1.129147054 1.175035076 1.124517724 1.20483482 1.155223828 1.155341533 1.135897013 1.134836503 1.16503301 1.16751705 1.103796253 1.114214475 1.073781309 1.094729287 1.119829588 1.142929134 164455288 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 1.025701927 1.002519782 1.0086982 0.985570051 0.9814405 1.009898239 1.008731189 1.010767033 0.983358042 1.009036465 0.985007025 1.015472411 0.962692514 0.964716452 0.922020053 1.003654275 1.018109265 1.048994902 238609818 exoglucanase Moniliophthora perniciosa FA553 Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Marasmiaceae;genus:Moniliophthora;species:Moniliophthora perniciosa; 0.764914759 0.832581964 0.816706422 0.818710293 0.854977409 0.809450556 0.774950132 0.820954951 32399641 phenol_oxidase Pleurotus sajor-caju Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Lentinaceae;genus:Lentinus; 0.914742371 0.887372577 0.878142971 0.94689385 0.869471167 0.831950118 0.927501221 0.854731896 0.832131527 0.867195967 0.845057732 0.821702478 0.845533347 0.923759933 0.850721189 257169254 chitinase Halomicrobium mukohataei DSM 12286 Carbon Cycling Carbon degradation Chitin superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halomicrobium;species:Halomicrobium mukohataei; 0.943443783 0.915686921 0.945744869 0.971405867 0.94799171 0.95038301 0.966056332 0.952038261 0.949183046 0.949414837 0.878258012 0.910419723 0.875950198 0.89653823 0.85598703 0.888788481 0.956237374 0.971399317 297529832 RgaE Geobacillus sp. C56-T3 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 0.846843704 0.827513263 0.822106085 0.833811344 0.844467059 0.826620669 0.84159034 0.844135828 0.828484218 0.825555309 0.86289467 0.797190436 0.852552546 0.799303625 0.853899121 359772592 cutinase Gordonia effusa NBRC 100432 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia effusa; 1.251200735 1.229399393 1.238303941 1.240608998 1.219038206 1.25781739 1.227428123 1.237640854 1.224282155 1.224895311 1.217252691 1.237760207 1.224357744 1.204252534 1.202455417 1.230624312 1.236281744 1.222892947 399534844 mhpa Amycolatopsis mediterranei S699 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 1.103425193 1.073270429 1.092798574 1.111803668 1.108280258 1.111497544 1.123553324 1.154439197 1.112481103 1.07622876 1.100957358 1.105073858 1.043575437 1.026102433 1.050120514 1.071046902 1.106800371 1.100800154 91782280 cdo Burkholderia xenovorans LB400 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 1.191906701 1.165075197 1.1493149 1.184712072 1.134608287 1.149653448 1.14986953 1.133580592 1.177728508 1.147424781 1.18649309 1.171461279 1.133221879 1.115316506 1.136704258 1.123992292 1.164122505 1.139432545 358459828 alkb Frankia sp. CN3 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 1.136528948 1.145939836 1.109134047 1.110349821 1.070969032 1.127689178 1.064034518 1.112990121 1.087286179 1.090147939 1.042610322 1.079361016 1.033827403 1.08667625 1.068059479 1.034904282 1.117148547 1.159845745 29466002 norb uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.7940281 0.820613677 0.768638129 0.813971146 25028761 amyA Corynebacterium efficiens YS-314 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium efficiens; 1.176292245 1.181042044 1.121728998 1.122171173 1.120395037 1.166698876 1.138140953 1.12475884 1.116803661 1.127212178 1.119557245 1.141787518 1.11080997 1.132665756 1.1208767 1.135068513 1.149232254 1.102128811 184197259 nitrilase Burkholderia phymatum STM815 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 1.137274163 1.145370985 1.110863644 1.136658702 1.113208776 1.155364787 1.116186068 1.122259058 1.123657428 1.13739142 1.124419557 1.119185989 1.092100789 1.108017001 1.066955092 1.10322928 1.145336212 1.133559871 168192786 soxY Methylobacterium sp. 4-46 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 1.393178492 1.364295151 1.339549325 1.374720172 1.343029235 1.369891417 1.348850786 1.393009608 1.353047914 1.356144989 1.348820132 1.358531302 1.313939131 1.321136338 1.310970731 1.334523374 1.355209582 1.342791827 270210900 alkb uncultured bacterium Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria; 0.751062033 0.829576662 0.808211316 0.765569117 0.86189263 0.80962946 299744469 nagg Coprinopsis cinerea okayama7#130 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 0.909079151 0.900564087 0.814353384 0.83243569 0.813769711 0.814190891 0.829547575 0.836152416 0.870045751 90954599 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.063666252 1.09086203 0.993748983 1.06612503 0.995245596 1.02874502 0.99113698 0.976577495 1.038513026 1.034976236 1.010187526 1.087486582 1.039708335 1.026952792 1.121869095 1.108794945 1.054314526 1.060812605 54302010 dmsa Photobacterium profundum SS9 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium profundum; 1.230602258 1.122635627 1.13674742 1.133727877 1.13388469 1.130645584 1.103400382 1.1615789 1.122590957 1.118560994 1.215236344 1.138101148 1.116178183 1.064994547 1.09346189 1.117831668 1.158973904 1.121896899 117164684 acetylglucosaminidase Streptomyces ambofaciens ATCC 23877 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces ambofaciens; 0.906204777 0.866448416 0.894713505 0.897241069 0.939482233 0.904185559 0.913677704 0.902881992 0.930985594 0.917371665 0.912768785 0.923846941 0.840718413 0.828802637 0.844171946 0.846025254 0.891891883 0.906731009 254429261 dehh109 Alcanivorax sp. DG881 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax; 1.000598141 0.991070572 0.934728941 0.963094994 0.957042194 0.973731295 0.956742239 0.941396362 0.969231271 0.993226045 0.883035198 0.969014209 1.011874306 0.951014656 0.937755853 0.943122255 0.971877846 1.085435552 170777149 trze Leptothrix cholodnii SP-6 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Leptothrix;species:Leptothrix cholodnii; 1.2361996 1.221715729 1.20666267 1.236479016 1.151082977 1.20851329 1.185972276 1.224272718 1.223587316 1.223052094 1.160997176 1.259922735 1.158853647 1.174210923 1.170548643 1.192481818 1.212868049 1.19475095 324108422 amyA Ruminococcus albus 8 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus;species:Ruminococcus albus; 1.066532954 0.997207927 1.045304776 1.058173669 0.9771199 1.012538143 0.980456597 1.035021015 1.047264118 1.020386803 1.000497689 1.051207478 1.020861821 1.009006441 0.925924249 1.008888122 1.053449125 0.992708474 381359441 oxdb Bradyrhizobium sp. S23321 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.981586499 0.944843522 1.022983956 0.979666088 0.987198764 0.975172713 0.999111464 0.977147077 0.971503551 0.979181578 0.979978941 0.993066327 0.923259777 0.942088141 0.915730501 0.919003045 1.006681186 1.002792888 162449769 endoglucanase Sorangium cellulosum 'So ce 56' Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 0.921500774 0.885580344 0.899674571 0.938197431 0.825150468 0.876303375 0.853208991 0.873503573 0.897072577 0.902002043 0.851579833 0.871960269 0.86803441 0.861200192 0.813465913 0.8988526 0.92134071 0.882440664 388567101 pobmo Hydrogenophaga sp. PBC Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Hydrogenophaga; 0.904042741 0.87865061 0.892118887 0.911045314 0.891938412 0.890306664 0.894954733 0.840784895 0.85647638 0.821829032 0.826861761 0.895531593 0.880751565 0.816497703 0.868571335 0.844949793 0.902015638 0.894538043 381209266 amyA Lentibacillus sp. Grbi Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Lentibacillus; 0.987817664 0.942855346 1.020827614 0.980452076 0.982539749 0.95778121 0.899892776 0.92695103 0.951072857 0.96727745 0.895432688 0.969022415 0.887341158 0.907524162 0.965852638 0.964612085 1.016730707 0.959641843 84665878 GAPDH_Calvin Rhodobacterales bacterium HTCC2654 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Maritimibacter;species:Maritimibacter alkaliphilus; 1.186513999 1.156065401 1.188154445 1.206854754 1.143689426 1.137523969 1.154263926 1.189694597 1.189303556 1.137423195 1.142894733 1.195193208 1.111641058 1.130972139 1.140403859 1.138639456 1.173309223 1.140259982 197103534 sqr Phenylobacterium zucineum HLK1 Sulfur Sulfide Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Phenylobacterium;species:Phenylobacterium zucineum; 1.239769382 1.164468787 1.164992438 1.195296769 1.173107272 1.254005073 1.175766634 1.128000512 1.147325058 1.171982166 1.182619653 1.158794304 1.148398942 1.19291213 1.168764165 1.170574162 1.236135142 1.182436535 3157562 nifh unidentified nitrogen-fixing bacteria Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.998069791 0.971696957 0.956794199 0.982956523 1.014565896 0.996786472 0.975967863 0.960076181 0.894119346 0.936507487 0.984233215 0.989904152 0.938601226 0.905942877 0.928566891 0.964254187 0.950125494 0.945019688 237785707 terc Corynebacterium kroppenstedtii DSM 44385 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium kroppenstedtii; 0.785320482 0.802262506 311890178 one_ring_23diox Rhodococcus equi 103S Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus equi; 0.867321441 0.889940757 0.85574773 0.909171351 0.872697144 0.862956482 0.853949386 0.913037335 0.893323926 0.83297902 0.900660041 0.814401196 0.856408316 0.905474106 344224010 SoxA endosymbiont of Riftia pachyptila (vent Ph05) Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;species:endosymbiont of Riftia pachyptila; 0.97175801 0.97378191 0.982312876 0.95911008 0.917506111 0.98685124 0.95040683 0.97023278 0.943993499 0.990082684 0.936809059 0.980506309 0.927874222 0.963421507 0.932534353 0.935222839 0.958150713 0.986434307 71735139 bphF1 Pseudomonas syringae pv. phaseolicola 1448A Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas savastanoi; 0.823627769 0.797757051 0.815316331 0.858692269 0.838899008 0.772517208 0.81633692 0.85736499 0.851473835 0.871525547 0.832203755 0.850050589 0.834496065 330934129 rgl Pyrenophora teres f. teres 0-1 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora teres; 0.885988934 0.971205268 0.875919004 0.871698284 0.910197238 0.92287147 0.904528166 0.980185607 0.862066457 0.883753835 0.886611921 0.894915793 0.893566961 0.89113899 0.829467427 0.893224293 0.886262534 0.913283453 35212661 ccmL Gloeobacter violaceus PCC 7421 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Cyanobacteria;class:Gloeobacteria;order:Gloeobacterales;genus:Gloeobacter;species:Gloeobacter violaceus; 1.296395045 1.314043626 1.301800661 1.307557233 1.287656089 1.300632781 1.273073275 1.265603267 1.278668131 1.268821665 1.288636566 1.312614836 1.26606703 1.215475374 1.240162245 1.282526179 1.291543895 1.275491572 300102957 p450aro Schizophyllum commune H4-8 Organic Remediation Aromatics polycyclic aromatics superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 1.333019523 1.291219564 1.28135257 1.312082625 1.276201876 1.339283588 1.2899221 1.290858569 1.286776342 1.267731554 1.283794112 1.296465112 1.263621491 1.242207298 1.256526291 1.293461899 1.316654094 1.268820593 388065280 amyA Gardnerella vaginalis 6119V5 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Gardnerella;species:Gardnerella vaginalis; 0.776605304 0.800467326 385763697 dsrB uncultured bacterium ws172H5 Sulfur sulfite reduction NA superkingdom:Bacteria; 0.969632016 0.967318628 0.973184379 1.031608366 0.96462537 0.947177897 0.966571519 0.979875839 1.023170716 0.943457687 0.899992374 0.995330508 0.976450258 0.908861216 0.97533275 0.967548905 1.012944273 0.967080026 403743379 dehh109 Alicyclobacillus hesperidum URH17-3-68 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Alicyclobacillus;species:Alicyclobacillus hesperidum; 1.039770824 1.030306366 1.047820115 1.047958262 1.000690802 1.019091659 0.972486117 1.031804177 1.014314269 0.997936385 1.010634666 0.999198701 0.973540043 1.031943788 0.956037121 1.008678528 1.029370102 1.02248086 334295352 mer Erysipelothrix rhusiopathiae str. Fujisawa Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Firmicutes;class:Erysipelotrichia;order:Erysipelotrichales;family:Erysipelotrichaceae;genus:Erysipelothrix;species:Erysipelothrix rhusiopathiae; 1.017704601 1.163447419 1.013583331 1.075038268 1.035460695 0.968583991 1.032272255 1.044352197 1.007756354 0.975370966 1.031482431 1.010291765 0.987463982 0.93336667 0.9873005 0.992185674 1.015766404 0.963512491 312221407 phospholipase_D_fungi Leptosphaeria maculans Carbon Cycling Carbon degradation Phospholipids superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Leptosphaeriaceae;genus:Leptosphaeria; 0.835897416 0.861602467 0.798529738 0.836788722 0.8242715 0.844049353 0.890308332 120563803 dsrB Desulfovibrio vulgaris subsp. vulgaris DP4 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio vulgaris; 0.941460082 0.961712773 0.935502636 0.959844727 0.93167768 0.976582375 0.948601188 0.92298441 0.937041902 0.940923783 0.880744776 0.956983907 0.890441712 0.923721428 0.883501604 0.89458234 0.956971402 0.958308653 195541992 tfda uncultured bacterium 1114 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria; 0.840978959 0.883291455 0.830557757 0.902234069 0.832446609 0.830060663 0.836921192 0.908174542 0.872948292 0.855939306 0.826021901 0.852157992 0.862336957 302463166 cmci Streptomyces himastatinicus ATCC 53653 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces himastatinicus; 1.222249809 1.253797414 1.216757585 1.2445279 1.206110003 1.224784749 1.215090247 1.21819485 1.221952362 1.184305611 1.200321969 1.210353475 1.167217769 1.127703527 1.16348502 1.167072651 1.218413498 1.173274416 125861476 dsra Methanoculleus marisnigri JR1 Sulfur sulfite reduction NA superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;family:Methanomicrobiaceae;genus:Methanoculleus;species:Methanoculleus marisnigri; 1.520850741 1.479021368 1.468727796 1.478331276 1.472581404 1.493985844 1.464665803 1.493136221 1.477035467 1.46527806 1.459631139 1.479969751 1.461262151 1.439156511 1.453775825 1.460192445 1.479149302 1.462045757 320150381 catechol_b Thermus scotoductus SA-01 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus;species:Thermus scotoductus; 0.863996451 0.86657528 0.863485901 0.86557237 0.853083891 0.889827455 0.852757034 0.874982902 0.872775319 0.850516875 0.856891216 0.82887209 0.869257052 0.833450286 0.880487607 0.867516743 0.906716579 209401708 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.851139155 0.810760978 327331188 acetylglucosaminidase Propionibacterium acnes HL097PA1 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium;species:Propionibacterium acnes; 0.861515658 0.883303869 0.870828239 0.916821992 0.894330728 0.879669412 0.869261697 1.049397536 0.950721472 0.878124348 0.898737171 0.837367487 0.852496505 0.810774068 0.805887235 0.828594438 0.867138381 0.902717699 238937270 sdsa Lachancea thermotolerans Organic Remediation Others NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Saccharomycetaceae;genus:Lachancea; 0.839055062 0.853740681 0.787756469 0.86498485 392243826 arsc Mycobacterium massiliense CCUG 48898 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium abscessus; 0.810510292 0.84596797 0.83638577 0.841562179 0.835321219 0.846024795 0.858180387 0.860743109 0.828994972 0.792584772 0.815038589 0.797949135 0.854257599 0.86475356 262274108 urec Grimontia hollisae CIP 101886 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;species:Grimontia hollisae; 0.796500478 0.82264891 400193196 atza Morganella morganii subsp. morganii KT Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Morganella;species:Morganella morganii; 1.022875888 1.010136049 1.007002798 1.016876813 1.002871242 1.019489424 1.07212562 1.005841365 1.01351922 0.954882697 1.03713444 1.012327672 0.986300528 0.944254463 0.950997821 0.975515288 1.016314095 1.047200567 72121176 hbh Ralstonia eutropha JMP134 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 1.335758295 1.288943858 1.269417539 1.297964404 1.290472475 1.275154098 1.26924399 1.2937322 1.297536765 1.270105512 1.269901519 1.291154485 1.26532035 1.257394901 1.260820895 1.269868614 1.3308551 1.262973808 157319275 rd Shewanella sediminis HAW-EB3 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella sediminis; 0.802323446 0.815213827 260774042 amyA Vibrio metschnikovii CIP 69.14 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio metschnikovii; 0.790551063 0.848275907 238761602 cueo Yersinia kristensenii ATCC 33638 Metal Homeostasis Copper Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia kristensenii; 0.792561622 0.8194733 0.807806702 0.904128008 0.786260862 0.822291372 0.827726317 0.830384814 0.862329697 0.844854286 295411204 catechol_b Kyrpidia tusciae DSM 2912 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Kyrpidia;species:Kyrpidia tusciae; 0.914009174 0.982353618 0.988392128 0.963005027 0.914115341 0.960935671 0.897335597 0.875928241 0.939567465 0.976012554 0.946758091 0.933438209 0.925277377 0.955149369 0.90742726 0.943654958 0.906717299 0.92432517 159040159 mer Salinispora arenicola CNS-205 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora arenicola; 0.807089936 0.894677289 0.807155916 0.797222516 0.853487391 0.810470053 0.838379996 0.880854088 220710211 mdlc Comamonas testosteroni KF-1 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 1.163058067 1.165492259 1.1865 1.198012643 1.155531114 1.156697296 1.14181787 1.126819805 1.176090316 1.137830983 1.143304654 1.177185424 1.139797671 1.116096734 1.179187116 1.146369881 1.171210577 1.127333226 389933206 tpha Burkholderia terrae BS001 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia terrae; 0.751724953 0.806452476 0.822474595 0.778854028 0.791524751 0.794588587 0.837133864 197767945 ppx Streptomyces clavuligerus ATCC 27064 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces clavuligerus; 0.813046904 0.788889158 0.80365359 0.833194171 0.800264003 0.851347719 0.86011382 302417270 axe Verticillium albo-atrum VaMs.102 Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticillium;species:Verticillium alfalfae; 0.851084642 0.85804682 0.862755712 0.806099007 0.802590215 0.829014242 0.848614002 0.851957685 0.791877731 0.826114815 0.858867922 39962604 amyA Magnaporthe grisea 70-15 Carbon Cycling Carbon degradation Starch superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 1.226908438 1.165166254 1.214845715 1.186823211 1.253739212 1.222482776 1.202725502 1.246737268 1.246137138 1.171828634 1.181987858 1.214154497 1.139696501 1.172170531 1.140340718 1.168497099 1.249495961 1.224843712 333996184 linc Treponema azotonutricium ZAS-9 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema azotonutricium; 0.815588875 0.820772135 0.852759039 0.863364008 0.834758146 0.840090451 0.861931418 0.890038834 0.867666389 0.856272318 0.885199678 0.921369568 0.819910497 0.801446788 0.789873411 0.789827436 0.869076019 0.872823649 167656883 mannanase Eubacterium siraeum DSM 15702 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Eubacteriaceae;genus:Eubacterium;species:Eubacterium siraeum; 1.107904477 1.0832398 1.096294551 1.067484395 1.083157949 1.053216681 1.081115865 1.08500072 1.021875585 1.03084923 1.042671182 1.070775052 1.00678791 1.069739043 0.935677209 1.04738493 1.084129478 1.120752344 112214149 alkb Rhodococcus sp. DEOB100 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 0.845063492 0.812810608 0.803737121 0.851952979 0.825772015 0.829598505 0.804828962 283835467 cysJ Citrobacter youngae ATCC 29220 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter youngae; 1.17816672 1.13379104 1.140060638 1.15881495 1.140996035 1.153950609 1.140870402 1.171691262 1.136927527 1.145369 1.142604954 1.154299408 1.125702363 1.133275778 1.125607208 1.167354161 1.133916157 1.132780861 384467563 ppx Citreicella sp. 357 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Citreicella; 0.949979934 0.888293817 0.913046746 0.984746354 0.854536269 0.911270757 0.866888102 0.921958755 0.963780094 0.895540426 0.899684585 0.88453608 0.887919704 0.87777232 0.889912789 0.971153233 0.901879086 60491352 acetylglucosaminidase Bacteroides fragilis NCTC 9343 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides fragilis; 1.034609885 0.995093022 0.878956026 0.917296562 0.909052911 0.899799191 0.932502474 0.955542833 0.943050698 0.828022387 0.918507491 0.932455929 0.914688898 0.822759874 0.820636604 0.996364387 0.976007341 0.884894909 355353779 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.087739238 1.056255735 1.118525114 1.111855553 1.034803446 1.059969068 1.036569057 1.062315557 1.104426976 1.069791765 1.052023827 1.084840468 1.06207835 0.998272968 1.022210866 1.039773362 1.065181427 1.081561323 297561221 amyA Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Nocardiopsis;species:Nocardiopsis dassonvillei; 1.441765931 1.444390525 1.444354685 1.417096422 1.410334763 1.46857568 1.415175875 1.429892659 1.4301801 1.404129157 1.416722872 1.419423206 1.411579096 1.410555818 1.419656093 1.445321358 1.407884459 1.414131027 392943514 pcag Frankia sp. QA3 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 1.200385156 1.173330617 1.166734809 1.163729716 1.173349654 1.204740506 1.140380394 1.156324202 1.168766201 1.155769346 1.167495242 1.153356691 1.14853321 1.099865576 1.064497138 1.121160703 1.18930888 1.184216218 270288710 pmoa Methylothermus sp. HTM55 Carbon Cycling Methane Methane oxidation superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylothermus; 0.793945121 0.81640817 0.858016105 0.818678771 0.852452652 0.851785727 0.854724294 0.841431641 0.805615225 0.818105287 0.8412368 0.818692659 0.799371279 0.818548643 319755292 amyA Deinococcus maricopensis DSM 21211 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus maricopensis; 1.116803412 1.135668727 1.101237344 1.127631204 1.112698633 1.139999228 1.095885222 1.080920871 1.094447735 1.111155121 1.105004629 1.11184637 1.109527588 1.118063227 1.070249361 1.10412294 1.129530874 1.107569832 378750412 mnp Lenzites gibbosa Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Lenzites; 1.045333603 1.061353232 1.060792717 1.062770283 1.048760745 1.061435755 1.058846035 1.045427155 1.011551006 1.055567199 1.026642724 1.04455968 0.991294662 1.014752572 0.974240026 1.007696533 1.046204433 1.032667197 292677084 xylanase Sphingobium japonicum UT26S Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium;species:Sphingobium japonicum; 0.967673458 0.918374809 0.91456336 0.928215453 0.934836727 0.979581477 0.919854683 0.918508776 0.903612015 0.867815789 0.860258221 0.923908142 0.88946523 0.868804469 0.894627801 0.883148519 0.90256931 0.867948492 363714341 ppx Acetobacteraceae bacterium AT-5844 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae; 0.806970783 0.942249304 0.850983603 0.893653242 0.910298102 0.930347404 0.884358928 0.837602961 0.882021662 0.908939507 0.858846254 0.908406511 0.885867925 0.861421006 0.889847151 0.842825784 0.915126857 226834637 fthfs Actinomyces urogenitalis DSM 15434 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces urogenitalis; 1.30842531 1.292250815 1.312031284 1.307059987 1.290391095 1.313763363 1.267310586 1.320386703 1.285661075 1.285259364 1.288052259 1.309873565 1.261205249 1.281849491 1.28906267 1.281421414 1.26953049 1.270540105 334343066 camdcab Sphingobium chlorophenolicum L-1 Carbon Cycling Carbon degradation Camphor superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium;species:Sphingobium chlorophenolicum; 0.977678263 1.019080433 0.961526135 0.988944227 0.997481307 1.007049585 1.016204824 0.971785978 1.000646022 0.985735832 0.994050567 0.988481808 0.98363631 0.978761475 0.997940431 0.990974878 0.970638282 0.965552792 156532308 tfda Enterobacter sakazakii ATCC BAA-894 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Cronobacter;species:Cronobacter sakazakii; 0.993576519 1.028920685 1.040675198 1.02457257 1.047013516 1.03691626 1.01940943 1.030320272 1.01187616 0.982649034 1.028063993 1.007140497 0.954459096 0.936536609 0.945057271 0.970785198 1.019475115 1.025025738 118424472 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.837741809 0.798397587 0.866277783 0.815061849 0.83005585 0.812562293 0.844264346 387892733 poba Pseudomonas fluorescens A506 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 0.863757533 0.881871104 0.9090945 0.944175966 0.935259018 0.901465839 0.915769194 0.906916201 0.921215338 0.888965322 0.959936961 0.94616564 0.855759853 0.829180836 0.84894771 0.973149147 0.916888884 291441677 alkk Streptomyces ghanaensis ATCC 14672 Organic Remediation Others NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces ghanaensis; 0.982836627 0.941270309 0.870976131 0.923022613 0.946130908 0.935065551 0.879668308 0.879093368 0.915650771 0.932211388 0.899496946 0.957321723 0.887195542 0.884847342 0.829758528 0.935918691 0.962866308 0.935699058 111613425 ophc Verminephrobacter eiseniae EF01-2 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 0.822682901 0.810692051 0.849783882 0.799474975 0.804393489 0.816294324 0.791581749 222354015 aps_apra uncultured bacterium Sulfur adenylylsulfate reductase NA superkingdom:Bacteria; 1.223794536 1.212144968 1.131652737 1.161327238 1.108362976 1.135284071 1.114551288 1.195131947 1.178887151 1.131725737 1.107383306 1.145827274 1.119301386 1.129545249 1.103931439 1.144391423 1.127745412 1.145727812 190890925 B_lactamase_A Rhizobium etli CIAT 652 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 0.814935793 0.811628306 0.825573211 0.916130654 0.834425841 0.855167829 0.851748666 0.831302516 0.839062416 0.843646718 0.873937656 0.808471131 0.886694775 0.853547227 14523789 napa Sinorhizobium meliloti 1021 Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium meliloti; 0.798167472 0.82638914 0.80329871 0.808873904 0.902253173 0.807224399 0.809525122 0.807273108 0.818238717 0.836567847 33573212 gdh Bordetella parapertussis Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella; 0.957656324 0.973183774 0.936037453 0.984411883 0.949134092 1.003034157 0.950885101 0.927435541 0.949529884 0.982334675 0.969688492 0.925007771 0.939540116 0.953562781 0.952506623 0.909764328 0.956602245 1.004969173 377537450 amyA Mobilicoccus pelagius NBRC 104925 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dermatophilaceae;genus:Mobilicoccus;species:Mobilicoccus pelagius; 0.954503788 0.920676584 0.919761645 0.974748692 0.9033763 0.939867631 0.915318927 0.941599702 0.921968419 0.91743969 0.901122021 0.95842076 0.865552377 0.893143495 0.909742618 0.882325062 0.925696528 0.950960718 54298286 gdh Legionella pneumophila str. Paris Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Legionellales;family:Legionellaceae;genus:Legionella;species:Legionella pneumophila; 0.838411328 0.811990484 0.882025756 0.856269751 0.86758331 0.841628802 0.85085053 0.910695962 0.873721927 0.875837057 0.927911106 0.896445626 0.831804028 0.871904511 0.872056091 0.869547717 0.864089342 0.849838356 40253087 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.776125933 0.816910475 0.795708978 0.832012641 0.82099579 0.847623076 164455348 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 0.867011305 0.925983439 0.870587091 0.898386115 0.878784738 0.891979519 0.849549698 0.843694167 0.889642102 0.866062652 0.860011773 0.872153885 0.866370963 0.874189409 0.899537911 0.859725599 0.877028333 0.943477788 307735940 cysJ Methylobacter tundripaludum SV96 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylobacter;species:Methylobacter tundripaludum; 1.04065209 0.980744076 0.898858919 0.943733082 0.884780577 0.95633344 0.944071712 0.925037832 0.92771332 0.97037027 0.92957877 0.915103817 0.9285508 0.913324583 0.884084143 0.888005054 0.944243196 0.990880851 422314231 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.820275698 0.806750433 0.812830746 0.849017849 393775302 tfda Ralstonia sp. PBA Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 0.967352009 0.968288767 0.959564503 0.974029751 0.984031826 0.954332478 0.96160668 0.933753457 0.95487856 0.936873362 0.92609533 0.927675848 0.920117836 0.933635865 0.915759925 0.895286075 0.963808763 0.97393197 340841685 nirs uncultured denitrifying bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.907477688 0.85914488 0.888191871 0.903943717 0.917799579 0.884209148 0.907738412 0.922607614 0.912290831 0.844572473 0.846340188 0.907331649 0.915306 0.84820961 0.872031529 0.82135859 0.875071479 0.871819207 94471277 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.960079977 1.006256122 0.969266674 0.968638914 0.960288893 0.96414687 0.973788167 0.942622878 0.943257477 0.944037723 0.931127914 0.9574955 0.90122487 0.914827023 0.879444597 0.853576422 0.97786943 0.977017779 332671742 ara Cellulomonas fimi ATCC 484 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas;species:Cellulomonas fimi; 1.400395108 1.404158608 1.370029725 1.367925757 1.374325031 1.405213084 1.360298275 1.348811553 1.35468654 1.361440105 1.372186157 1.373508066 1.332372837 1.332789241 1.342320285 1.342994167 1.375790375 1.374562611 111152782 amyA Frankia alni ACN14a Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia;species:Frankia alni; 0.813920322 0.806663257 0.801900587 0.790374277 0.79939866 0.827720039 119459005 soxY marine gamma proteobacterium HTCC2080 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 1.019870758 1.0282093 1.038344913 1.059410896 1.030675173 0.993761456 1.033729776 1.036981608 1.040865559 1.027768596 1.001839195 1.028775288 1.005564008 0.955014771 0.981649045 0.994187858 1.025225118 0.970382598 386856258 amyA Deinococcus gobiensis I-0 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus gobiensis; 0.792040256 0.879956729 0.791826164 0.878077254 0.846316245 0.840866245 0.82519286 0.826690339 0.843391962 0.833293685 0.790512028 146342696 urec Bradyrhizobium sp. ORS 278 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 1.175071761 1.173612483 1.141543557 1.162072472 1.136254719 1.161030208 1.125742254 1.153840566 1.144799071 1.145317824 1.142506404 1.158354403 1.1360088 1.123371222 1.054274164 1.129485053 1.163020506 1.144475354 333735474 codh Treponema azotonutricium ZAS-9 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema azotonutricium; 0.824329742 0.848353796 0.973325565 0.841265897 0.851557303 0.869192496 0.802060287 0.861197856 0.836729375 0.850489218 0.958175441 0.820246552 0.786675723 0.85318016 0.914487354 0.964939273 0.85156881 187928448 catb Ralstonia pickettii 12J Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 0.981474475 0.997418005 0.990111174 0.980906364 0.976687856 0.991178027 0.954902928 0.979817212 0.974154712 0.975311503 0.980887771 0.986755883 0.962013407 0.951126721 0.929660713 0.973854128 0.992628941 0.997385816 291303320 acetylglucosaminidase Stackebrandtia nassauensis DSM 44728 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Glycomycetaceae;genus:Stackebrandtia;species:Stackebrandtia nassauensis; 0.939769551 0.935152381 0.899237271 0.943921893 0.897725139 0.934777257 0.856953558 0.858883014 0.884121643 0.889460545 0.915906395 0.943786563 0.848099278 0.881780219 0.853011696 0.957794576 0.967949199 377523642 terc Gordonia otitidis NBRC 100426 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia otitidis; 0.881557536 0.895427927 0.9798317 0.866718563 0.829090692 0.814108779 0.869735573 0.819175063 0.81655829 0.821040918 0.837879987 0.888612785 0.819377758 83835987 phn Roseovarius nubinhibens ISM Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius;species:Roseovarius nubinhibens; 1.0634957 1.05629206 1.01732066 1.048188463 1.006537523 1.028571671 1.045680086 1.030730848 1.036770952 1.061341441 1.000940851 1.047398902 1.001922532 1.000571985 0.949833748 1.017901365 1.008290212 1.020575351 156233707 bphF1 Roseiflexus castenholzii DSM 13941 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus;species:Roseiflexus castenholzii; 1.004190199 0.991501939 0.946462204 0.968335503 0.971631974 0.971286295 0.947139462 0.954149986 0.958661377 0.967378635 0.956425472 0.995684725 0.917021151 0.957171126 0.849443438 0.908400847 0.971393491 0.99423569 198266264 mer Octadecabacter antarcticus 238 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 0.84441495 0.842064855 0.761425616 0.809399726 229493157 amyA Rhodococcus erythropolis SK121 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 1.034541062 1.069978442 1.039003003 1.054314958 1.031362336 1.0499079 1.017769585 1.055471532 1.045734911 1.042525001 1.004699381 1.042226027 0.960491975 1.022686242 1.08192851 0.974923609 1.057235319 1.063639084 45386115 narg unidentified bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.908181457 0.879392471 0.935582599 0.936860006 0.957122986 0.886730055 0.914826729 0.957079135 0.940562599 0.939151846 0.930936946 0.938718257 0.886125033 0.898829534 0.880768782 0.890361429 0.919973854 0.906000706 251846154 amyA Paenibacillus sp. oral taxon 786 str. D14 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus sp. oral taxon 786; 0.98813185 1.017824568 0.954298962 1.006666628 0.987500526 1.039622418 0.977908329 0.976612425 0.998241624 1.015307908 0.96356338 1.004620594 0.978826478 0.981811739 0.938733667 0.987629915 1.01795729 1.012450757 322834315 chitinase Rahnella sp. Y9602 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Rahnella; 1.112962057 1.074563843 1.082618129 1.079411194 1.063503131 1.111586165 1.077289333 1.051710872 1.08651385 1.064315825 1.074385189 1.081563602 1.064558261 1.071984529 1.103583608 1.04656012 1.094084386 1.096132134 294677306 cellobiase Rhodobacter capsulatus SB 1003 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter capsulatus; 1.059593487 1.028918435 1.048857778 1.077054822 0.998738734 1.05166756 1.009069556 1.037711477 1.037946674 1.035051754 1.039469024 1.034318876 0.998761424 1.05149565 1.010222927 1.024086533 1.062760179 1.067685413 302441138 poba Streptomyces sp. C Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 0.832971676 0.837796129 0.862868076 0.873936515 0.837215641 0.836305775 0.849568657 0.84785257 0.87515616 0.869912911 0.793914261 0.870382741 0.849241302 6453624 trzn Streptomyces coelicolor A3(2) Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 1.037428673 1.116441009 1.043148642 1.035040653 0.97156787 1.011589312 0.98944652 1.025576322 1.04382608 1.041375985 0.963815041 0.980648572 0.985173424 0.993030182 0.925478773 0.984611647 1.045122701 1.084201244 84778379 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.815321187 0.862395149 323388198 arsc uncultured bacterium Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 0.794971648 0.941411552 0.802978333 0.840608828 0.940450211 0.819910547 0.82659487 0.894564457 0.826448991 0.821195814 172036138 nira Cyanothece sp. ATCC 51142 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 1.222818628 1.196218938 1.167731024 1.194717518 1.173502329 1.194680406 1.118039542 1.148033126 1.165113976 1.155520975 1.140711394 1.167836119 1.149693557 1.126952485 1.076430948 1.130378401 1.217585884 1.184608214 84494483 amyA Janibacter sp. HTCC2649 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Janibacter; 1.033339661 1.006196488 0.986439725 1.000450136 1.021797192 1.006738416 0.959034821 0.958353194 0.999089376 0.931009758 0.967056218 1.039168011 0.929507317 0.940680913 0.913037925 0.907714893 1.035240759 0.993068488 11876710 xylanase Coniothyrium minitans Carbon Cycling Carbon degradation Hemicellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;genus:Coniothyrium; 0.991359054 1.082388599 1.058323496 1.030268757 1.039040502 1.072428021 1.029392849 1.034660965 1.031222224 1.071513163 1.042135149 1.034935297 0.973810387 0.974017903 0.979060318 1.012016872 1.06704441 1.033994527 47078064 bphF1 Pseudomonas sp. ST41 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.861728548 0.84803166 0.879797732 0.906406929 0.886665274 0.864492343 0.875389718 0.909879553 0.858621188 0.900733366 0.872539234 0.883830532 0.83836339 0.813181835 0.89349577 0.997129502 0.890159157 0.875234017 339325889 catechol Cupriavidus necator N-1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 1.141341412 1.147755647 1.244563793 1.148530761 1.256531698 1.137763909 1.199133681 1.086267299 1.131054809 1.165325167 1.159034684 1.166416691 1.127617614 1.144947808 1.109265949 1.140191934 1.101776523 1.136383756 219719652 nitro Stenotrophomonas sp. SKA14 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas; 1.189312384 0.862980776 0.859059665 0.887401323 0.836844297 1.205947163 0.830335174 0.84326233 0.863914286 0.833968741 0.860517153 1.088144475 0.884144006 311107505 tehb Achromobacter xylosoxidans A8 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter;species:Achromobacter xylosoxidans; 1.033721964 0.997704318 1.046398623 1.015938285 1.023050146 1.028883711 1.032290558 1.043910664 1.050951162 1.023373181 1.004919951 1.048235207 0.974915521 0.978736828 0.983316798 0.970507879 1.037264992 1.042501674 327481346 GAPDH_Calvin Pseudomonas stutzeri DSM 4166 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 0.928598475 0.965785284 0.925846242 0.947757346 0.859415071 0.897319459 0.848476515 0.863633891 0.936543888 0.906827553 0.889325571 0.896113961 0.858292873 0.9031442 0.834018254 0.867103796 0.96184335 0.952594467 343924236 amyA Gordonia alkanivorans NBRC 16433 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia alkanivorans; 1.120878165 1.140725696 1.123107257 1.162853045 1.109482595 1.186209657 1.14645267 1.165894918 1.133531654 1.125521952 1.124095078 1.137221118 1.08590968 1.09750385 1.082840263 1.061672674 1.14350573 1.137509505 74057960 PRK Thiobacillus denitrificans ATCC 25259 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus;species:Thiobacillus denitrificans; 0.799311447 0.865006065 0.829881236 0.826038122 0.793939483 0.804868661 0.810516092 0.796193816 0.803489053 74038476 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.779142185 0.866624217 0.8189779 0.877231832 402843518 mhpa Klebsiella sp. OBRC7 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella; 1.166004411 1.201721694 1.101138931 1.109385022 1.123011433 1.147739219 1.098725468 1.109048262 1.110830341 1.141030607 1.103129332 1.131920933 1.122839912 1.144904132 1.112839263 1.136603713 1.148953854 1.123099092 271965632 tfdb Streptosporangium roseum DSM 43021 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 1.077472855 1.01884165 1.075914264 1.064998322 1.031549454 1.016123241 1.004290848 1.046741096 1.064831762 1.032155987 1.069927075 1.021601067 1.029645292 1.011979398 0.973762075 1.038353974 1.066931496 1.012290644 41349577 narg Haloferax mediterranei Nitrogen Denitrification NA superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloferax; 1.192754006 1.114767849 1.149720103 1.166519371 1.131041145 1.172180088 1.146980417 1.168218197 1.148347972 1.122427142 1.139696254 1.121441179 1.126087925 1.070526794 1.066093776 1.129804978 1.153544762 1.140155392 306517161 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.101503482 1.078968046 1.076199842 1.129853296 1.061855845 1.122572313 1.044759819 1.085031935 1.074571722 1.065607579 1.06842179 1.089772397 1.046567815 1.043360029 1.048237985 1.068226064 1.127754168 1.068617205 119898145 xylj Azoarcus sp. BH72 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 0.967307221 1.01464946 0.976379562 0.985228539 0.918734135 0.93221645 0.924351029 0.949887419 0.929636812 0.958308864 0.934480451 0.953408793 0.933545828 0.951938125 0.909525195 0.953421725 0.988971992 0.992471285 384219373 terc Bradyrhizobium japonicum USDA 6 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 0.840606818 0.928069475 0.820369115 0.819570208 151302176 APS_AprB Desulfovibrio sulfodismutans Sulfur adenylylsulfate reductase NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 0.963742042 1.055011007 0.882866339 0.921141569 0.969611854 0.982770341 0.925996305 0.895067331 0.932263364 0.947862887 0.942218489 0.924267741 0.918500951 0.911957606 0.916522935 0.896620562 0.921153438 1.019666424 298290437 FBPase Starkeya novella DSM 506 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Starkeya;species:Starkeya novella; 0.844903179 0.849264762 0.85771256 0.86396999 0.880724997 0.786691475 0.818361942 0.832821785 0.843110985 0.888571076 311895209 amyA Kitasatospora setae KM-6054 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Kitasatospora;species:Kitasatospora setae; 1.452681943 1.409236041 1.362019091 1.39252898 1.356883297 1.410393474 1.346987687 1.398050675 1.393615547 1.370853543 1.360545109 1.377857855 1.336433957 1.34655738 1.352866467 1.355514346 1.400788215 1.384962524 328884789 chitinase Streptomyces venezuelae ATCC 10712 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces venezuelae; 0.904477776 0.886534187 0.838679442 0.881984222 0.88776401 0.832225029 0.827454826 0.816300793 0.967604194 0.902834493 0.896317442 0.878553478 0.808758673 0.835641945 0.856005205 0.884313891 0.873833789 299524961 pgk Hyphomicrobium denitrificans ATCC 51888 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium;species:Hyphomicrobium denitrificans; 0.786836674 0.796656956 0.803246381 0.882494414 0.855170726 0.866518195 0.793838745 0.83359878 0.853361917 0.838911462 0.808118307 0.78718527 62512297 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.243725698 1.239545378 1.220954219 1.254439635 1.2415083 1.25619944 1.241599995 1.237275933 1.212499393 1.228472958 1.22692847 1.233855939 1.179471411 1.187366824 1.197880933 1.207712875 1.227851118 1.229472376 68346556 amyA Pseudomonas fluorescens Pf-5 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas protegens; 0.968985911 0.897803451 0.916867008 0.921110731 0.941623154 0.964197927 0.931330867 0.97139945 0.959302813 0.899389669 0.928312951 0.911356783 0.920790162 0.853017865 0.836701564 0.864366973 0.960648792 0.908612464 189338574 aoxb Burkholderia multivorans ATCC 17616 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 1.200231338 1.198226207 1.203697945 1.168747267 1.173267314 1.21736033 1.20160917 1.189571699 1.16962165 1.149902005 1.166920106 1.19177906 1.173718341 1.129157232 1.138429852 1.142721739 1.177093301 1.180828322 74053701 one_ring_12diox Sphingomonas sp. 1XXyl1b Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 1.199797078 1.168319341 1.155981825 1.163639574 1.153744722 1.182864839 1.142836958 1.192687846 1.156627878 1.151993357 1.14038405 1.137359431 1.138553701 1.136655469 1.112104106 1.144144219 1.176792321 1.167837889 338811695 codh Acetonema longum DSM 6540 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Acetonema;species:Acetonema longum; 1.077066234 1.076400915 1.033106337 1.088985526 1.016047533 1.097834588 0.98237173 1.030750254 1.04534024 1.066592923 1.003641762 1.017513647 0.991185079 1.038526899 0.994230031 1.012800706 1.101074403 1.056114417 344690022 rubisco uncultured bacterium Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria; 0.995578545 0.953289743 0.972365636 1.018578967 1.028613184 0.963565069 1.03457406 1.00140848 0.989635199 0.982647883 0.98116046 0.990275263 0.970659859 0.92272557 0.909009694 0.928050557 0.970720086 0.97392287 290472189 SoxB Meiothermus ruber DSM 1279 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Meiothermus;species:Meiothermus ruber; 1.377589406 1.386292921 1.327760125 1.345915895 1.320775851 1.37957197 1.309307269 1.33351387 1.329806131 1.344351372 1.325347419 1.324354021 1.280681796 1.321442682 1.278033461 1.31358345 1.346950548 1.358220698 257335202 FBPase Thermosynechococcus elongatus BP-1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Thermosynechococcus;species:Thermosynechococcus elongatus; 0.889983103 0.879701968 0.850485815 0.904977751 0.848625734 0.830970612 0.837962615 0.81683606 0.894544793 0.875724855 209492505 CsoS1_CcmK Arthrospira maxima CS-328 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Arthrospira;species:Arthrospira maxima; 0.858261361 0.839031904 0.844821838 0.901111654 0.899006492 0.835347109 0.875297352 0.877021851 0.90419697 0.877431028 0.844507627 0.892097362 0.890950813 0.881146594 0.869686371 0.863005126 301319176 cda Olsenella uli DSM 7084 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Olsenella;species:Olsenella uli; 0.945347416 0.918875913 0.943448682 0.950027171 0.902285237 0.880798272 0.889788562 0.921544436 0.931186261 0.9245009 0.928676898 0.978607114 0.911155722 0.919468243 0.853393886 0.891821314 0.961204775 0.938843669 375057619 amyA Rhizobium sp. PDO1-076 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 1.462341854 1.397902904 1.409328426 1.44631863 1.397855635 1.464502461 1.442457273 1.437394444 1.407283569 1.375092428 1.430966849 1.410237404 1.396082142 1.374935475 1.4128498 1.442898666 1.459180881 1.37448331 342820326 PRI Vibrio tubiashii ATCC 19109 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio tubiashii; 0.855877091 0.831120102 0.855781271 0.87215073 0.881337224 0.839993201 0.816982881 0.809688198 0.820471024 0.79063519 0.869951127 80973474 mcra uncultured Methanomicrobiales archaeon Carbon Cycling Methane Methanogenesis superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales; 0.776308424 0.824285254 0.799696956 0.87504343 0.91585623 0.85115993 0.800071434 0.808846636 0.824852154 0.854637687 0.889366198 0.888554506 0.891532743 0.851549728 311889818 ppk Rhodococcus equi 103S Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus equi; 1.214854777 1.21284937 1.184977042 1.200350695 1.196415283 1.231993185 1.18603622 1.191964269 1.169013185 1.187294395 1.203129216 1.225037841 1.17925904 1.175672772 1.165639407 1.205019169 1.190069978 1.187791491 357635430 mer Desulfovibrio sp. FW1012B Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 0.843330679 0.826577656 0.825578251 0.830709774 0.833476378 0.833914882 0.880967089 0.833999927 0.795637838 0.830876035 35213913 FBPase Gloeobacter violaceus PCC 7421 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Cyanobacteria;class:Gloeobacteria;order:Gloeobacterales;genus:Gloeobacter;species:Gloeobacter violaceus; 1.298222103 1.312771571 1.286818359 1.306757261 1.270969511 1.319887308 1.244893754 1.265283697 1.233930149 1.265204911 1.254140816 1.275695896 1.267176518 1.252321103 1.232951281 1.252111151 1.320013869 1.273545496 109290253 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.950771875 1.079980055 0.912788905 0.92008324 0.970263569 0.977683441 0.884889373 0.88071534 0.947391714 0.914262277 0.900759808 0.896727016 0.957345042 0.920913607 0.875520345 0.92427206 0.974039356 0.975687408 355539702 arsc Agrobacterium tumefaciens CCNWGS0286 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 1.029584788 0.966996272 1.173620396 0.997904523 0.968623972 0.967016368 0.948043208 0.919441117 1.021596059 0.970847371 1.012942952 0.94686037 0.977572259 0.933793443 0.892193752 0.961845947 1.051063122 0.972234179 302523756 poba Streptomyces sp. AA4 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 0.928066282 0.961465084 0.997056053 0.946545147 0.937705168 0.936970767 0.938695179 0.91107853 0.939746489 1.013727599 0.937855097 0.952385019 0.942775922 0.89139715 0.896558931 0.951990181 1.019221613 0.91676274 33669028 arsc Rhodococcus erythropolis Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 0.862199403 0.859388391 0.895113188 0.825823416 0.794350952 0.805538894 0.793451861 0.866291165 0.817836388 334137943 chitinase Paenibacillus sp. HGF7 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 0.983111742 0.930356002 0.972035416 0.985733307 0.903913798 0.894150355 0.868455632 0.929317292 0.98343515 0.923347638 0.921085961 0.935900734 0.927506314 0.891381989 0.837356085 0.903374962 0.946013 0.927356594 330466608 endoglucanase Verrucosispora maris AB-18-032 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Verrucosispora;species:Verrucosispora maris; 1.103607064 1.181684386 1.15600496 1.107945946 1.105798072 1.161812798 1.102314105 1.091497312 1.085720573 1.115036024 1.102158866 1.107011721 1.11913485 1.088137704 1.07466649 1.101695215 1.130320747 1.14676498 292814273 terc Achromobacter piechaudii ATCC 43553 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter;species:Achromobacter piechaudii; 0.986986058 0.980905451 0.990151459 0.982805456 0.92124831 0.985033615 0.955779582 0.939361584 0.972617725 0.98154374 0.994571295 0.920590559 0.916847994 1.005259052 0.941618379 0.944184833 0.970548484 0.995751516 119698615 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 1.007980855 1.060321831 1.025156013 1.025192992 1.051164876 1.052384927 1.012391176 1.016503723 1.050412344 1.066256763 1.119602818 1.053413165 1.025619231 0.970565999 0.995267753 1.035458081 1.032240232 1.052368151 359408888 GAPDH_Calvin SAR116 cluster alpha proteobacterium HIMB100 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 1.186752647 1.164215223 1.166478436 1.196852977 1.167067293 1.166157421 1.157319839 1.16140847 1.1628549 1.158628302 1.149338173 1.19424646 1.117724289 1.114555805 1.105826943 1.135661031 1.173267699 1.156838536 321163173 ara Granulicella tundricola Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Granulicella; 0.817854941 0.806880513 0.8094914 0.827166199 0.854775575 0.844907252 0.836289748 0.811329035 0.901798176 0.84605109 33864503 nira Prochlorococcus marinus str. MIT 9313 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Cyanobacteria;order:Prochlorales;family:Prochlorococcaceae;genus:Prochlorococcus;species:Prochlorococcus marinus; 0.860305716 0.830022546 0.890027354 0.851904934 0.893725487 0.882561752 0.887149032 0.820233576 0.827742514 0.83093731 0.846951198 0.882723709 0.822304993 0.838361303 0.898836541 0.853839816 52081493 amyx Bacillus licheniformis ATCC 14580 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus licheniformis; 0.790239812 0.792646795 124260742 rubisco Methylibium petroleiphilum PM1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 1.083225083 1.102021868 1.070196229 1.103150812 0.975903001 1.062363264 1.11241467 1.042501716 1.07436114 1.040694006 1.004825037 1.028526351 1.00458158 1.018331472 1.004635745 1.004797302 1.054234509 1.061777318 357399486 chitinase Streptomyces cattleya NRRL 8057 = DSM 46488 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces cattleya; 0.93627746 1.170987841 0.969512563 0.965290337 0.992149544 0.99576462 0.91855253 0.923877578 0.927239233 0.939105182 0.906032582 0.905910436 0.971384476 0.92374962 0.926072975 0.939001412 0.98580849 1.017754123 40783181 phospholipase_B_fungi Aspergillus niger virulence degradation NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 0.877478841 0.892856378 0.952722381 0.927419838 0.936650197 0.893430939 0.927720483 0.90600758 0.943268805 0.899329217 0.898911925 0.892792227 0.840265337 0.844075388 0.881520977 0.820748909 0.835718505 390436418 atzb Pantoea agglomerans IG1 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea;species:Pantoea agglomerans; 0.805681944 0.880155272 328886780 xylanase Streptomyces venezuelae ATCC 10712 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces venezuelae; 0.891795407 0.904957913 0.962687118 0.912701188 0.941077928 0.987927766 0.912925361 0.944557339 0.879118222 0.968302453 0.93297712 0.912401604 0.941604179 0.914242273 0.891494523 0.909539013 0.922188968 0.914207735 190688548 acetylglucosaminidase Cellvibrio japonicus Ueda107 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio;species:Cellvibrio japonicus; 1.049494517 1.010807574 1.060443016 1.053604471 1.040727013 1.06563724 1.039913211 1.171258386 1.072194164 1.061128448 1.069190106 1.053939951 1.042268844 1.056382206 1.04185271 1.017380443 1.028577612 1.041208267 241665117 xylj Ralstonia pickettii 12D Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 1.431822925 1.416274874 1.405839457 1.374077107 1.379147821 1.442576306 1.381080994 1.403218246 1.365049595 1.390889758 1.379969512 1.38557668 1.390418016 1.355235189 1.355878493 1.357177231 1.431825851 1.416141016 170659076 atzb Methylobacterium radiotolerans JCM 2831 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium radiotolerans; 0.953757928 0.927367259 0.901024853 0.962091486 0.898733116 0.944191757 0.892158036 0.894645874 0.917834057 0.912531584 0.900134195 0.935331063 0.893707099 0.908902932 0.867993609 0.887096351 0.94863009 0.929681299 313585820 aps_apra uncultured bacterium Sulfur adenylylsulfate reductase NA superkingdom:Bacteria; 1.279160375 1.262020578 1.287414788 1.27196375 1.270628338 1.30015224 1.263066488 1.266905943 1.284944927 1.256596496 1.25665032 1.259382469 1.26765874 1.282513425 1.307176173 1.25584318 1.299089988 1.278823463 114335934 mer Shewanella frigidimarina NCIMB 400 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella frigidimarina; 1.100409921 1.06773796 1.075169572 1.075372054 1.098053751 1.079820361 1.089962589 1.052327482 1.066842322 1.082034317 1.059822352 1.072287853 1.059888846 1.035558382 1.032651684 1.055203976 1.063899302 1.092803736 113431894 rubisco bacteria endosymbiont of Lucinoma aff. kazani Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria; 1.128570361 1.102860665 1.105424918 1.145733365 1.093329975 1.127553159 1.096594469 1.088333317 1.11517081 1.049832216 1.085165749 1.092067735 1.055809209 1.039279184 1.082874317 1.083499473 1.157536668 1.097711669 177840327 ccmL Opitutus terrae PB90-1 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 1.025065417 1.073145855 1.004276708 1.047894054 1.027505942 1.027975895 0.989686925 0.990875372 1.036224209 1.001204155 1.001316784 1.012582311 0.99449641 0.995858117 0.989231272 0.981372995 1.051314497 1.054175929 84358870 poba Burkholderia dolosa AUO158 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia dolosa; 1.099095137 1.076676399 1.09447263 1.064335095 1.075580934 1.093328586 1.014824225 1.056444432 1.043439053 1.070415881 1.046306391 1.069873838 1.049169843 1.05576473 0.935522915 1.033017972 1.073358803 1.094731109 359780850 xyla Pseudomonas psychrotolerans L19 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas psychrotolerans; 1.155512118 1.083130927 1.071460968 1.066297511 1.098464606 1.135849252 1.107003531 1.100236835 1.100757789 1.072233555 1.07715089 1.070645311 1.061168798 1.049793969 1.034521499 1.067647415 1.124783238 1.086125397 299123733 mannanase Halalkalicoccus jeotgali B3 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halalkalicoccus;species:Halalkalicoccus jeotgali; 0.82318054 0.813431668 0.849389622 0.807267003 0.792826578 0.829220283 0.811626003 85827362 phn Roseobacter sp. MED193 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 0.90060333 0.859871641 0.876171362 0.957725489 0.924861668 0.847289936 0.89592523 0.917339516 0.920703134 0.875711797 0.866325855 0.895352306 0.881301322 0.839257493 0.832062102 0.850548715 0.879484607 0.892203727 391857335 bphF1 Hydrocarboniphaga effusa AP103 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Sinobacteraceae;genus:Hydrocarboniphaga;species:Hydrocarboniphaga effusa; 0.871433423 0.937218395 1.192176124 0.866506605 0.869220859 0.904184416 0.840695245 0.832740191 0.873216397 0.927807876 0.818694407 0.888634327 0.887373747 0.889210644 0.861847831 0.879553598 0.940032641 294677245 pgk Rhodobacter capsulatus SB 1003 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter capsulatus; 1.146929769 1.092978827 1.096769042 1.17307491 1.059376487 1.074884667 1.096287306 1.133416273 1.160606653 1.108595645 1.077988882 1.141488459 1.063733825 1.052685937 1.087826063 1.096225362 1.152055558 1.098629941 307772774 urec Roseibium sp. TrichSKD4 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseibium; 0.901058734 0.883476804 0.96292781 0.889960255 0.856940266 0.86320902 0.883851573 0.882988368 0.839644881 0.825903331 0.862117237 0.812586249 0.814557684 0.867809478 0.888210481 0.86466173 311231182 amyA Frankia sp. EuI1c Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 1.091263766 1.064699045 1.010627944 1.107303255 1.058403264 1.063081468 1.034017351 1.095992142 1.133430477 1.048911028 1.028323326 1.112475006 1.019636593 1.016106626 1.040672339 1.032476663 1.073482746 1.080429444 339719897 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.095960159 1.058681621 1.071594099 1.076047526 1.027860304 1.04256537 1.010184181 1.062594956 1.075658427 1.027454229 1.023310326 1.062063228 1.046598626 1.035824689 1.003770889 1.012608574 1.077436409 1.043232242 374814993 fthfs Treponema primitia ZAS-1 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema primitia; 0.992212269 1.06337797 1.059308178 1.056742546 1.059190346 1.029825785 1.056842131 1.084365165 1.049163953 1.019258392 0.99508848 1.091604658 1.037240916 0.987273889 0.960195718 1.041635761 0.989673629 1.000811683 395652333 one_ring_23diox Pseudomonas extremaustralis 14-3 substr. 14-3b Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas extremaustralis; 1.152853775 1.114809127 1.095334502 1.140367555 1.061725004 1.116226506 1.09516638 1.142846589 1.115966583 1.101538187 1.068921484 1.113201569 1.045898596 1.069783114 1.072678057 1.078884137 1.117210069 1.137721275 83404768 nirs uncultured organism Nitrogen Denitrification NA 0.810044285 0.814119886 0.885851709 353676973 tehb Brenneria sp. EniD312 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Brenneria; 0.979318568 0.966162004 0.983251871 1.007241717 0.961447573 0.997156615 0.96732197 0.959603376 0.991621069 0.921639354 0.934760413 0.958490621 0.910407335 0.931740006 0.942986445 0.942837923 1.002561182 0.980314556 119526155 mer Nocardioides sp. JS614 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 1.039750686 1.024988255 1.027773157 1.032810265 1.01451322 1.019035831 0.991548597 1.018465308 0.990101583 0.99224228 0.996619312 0.996348254 0.935033785 0.960504567 0.922411292 0.93952066 1.016167614 1.045951743 302415817 urec Verticillium albo-atrum VaMs.102 Nitrogen Ammonification NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticillium;species:Verticillium alfalfae; 0.911336135 0.972927662 0.926483169 0.984699618 0.961593518 0.95916324 0.934770063 0.923637268 0.930134558 0.926199779 0.942435017 0.922952034 0.976299378 0.922597857 0.855020176 0.946392939 0.960014193 0.937347927 148474838 napa uncultured bacterium Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria; 0.845601286 0.825157328 0.928214747 0.854201034 0.820553126 0.882653712 0.887557001 0.847623008 0.838370753 0.788917592 0.816848973 0.827652061 0.857379901 0.858459341 307775292 dehh Roseibium sp. TrichSKD4 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseibium; 0.903728021 0.880509287 0.866145502 0.91104062 0.895150185 0.939667272 0.881711232 0.847620402 0.9429183 0.877716338 0.865464671 0.860758147 0.860604898 0.906526479 0.899831661 0.865144437 0.918334416 0.897754057 167037093 cda Thermoanaerobacter pseudethanolicus ATCC 33223 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Thermoanaerobacter;species:Thermoanaerobacter pseudethanolicus; 0.94339736 0.888429259 0.90033582 0.885251873 0.844499019 0.856073653 0.884524806 0.873198922 0.784894679 0.894488699 0.915125801 0.876821729 0.822492637 0.849124959 374667633 TIM Burkholderiales bacterium JOSHI_001 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales; 1.114009994 1.093292309 1.061187623 1.072458808 1.081445429 1.141796579 1.089878756 1.075602785 1.109570058 1.133946062 1.071455097 1.081665739 1.044697177 1.045716107 1.030892182 1.051374213 1.14887226 1.140412539 149811896 ppx Roseobacter sp. AzwK-3b Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 1.048976537 1.03212014 0.995410611 1.02724607 0.99541098 1.050060173 1.04538832 1.089962689 1.036731952 1.028672191 0.989260363 1.006197544 0.956893128 1.044516516 0.933535389 0.999166471 1.015488325 1.071688517 118424398 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.986978499 0.852014306 0.899166993 0.935115997 0.916560437 0.97555141 0.915664464 0.910962756 0.912739132 0.917443623 0.910939166 0.922621599 0.857889984 0.84953953 0.829565637 0.825633391 0.888181552 0.926667846 145593704 terc Salinispora tropica CNB-440 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora tropica; 0.834115285 0.869090565 0.887135087 0.83007542 0.835507724 0.885642512 0.832053759 0.805189098 0.881018153 0.819701697 0.848553075 0.858672677 0.826433801 0.797798475 0.880802399 210071573 phospholipase_C_fungi Penicillium marneffei ATCC 18224 Carbon Cycling Carbon degradation Phospholipids superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 1.157420183 1.108846057 1.11064363 1.081953471 1.131235509 1.152869269 1.094270599 1.079802457 1.091083753 1.078446493 1.148262764 1.115761463 1.05500126 1.063139013 1.129772121 1.127106755 1.151649013 1.15183866 259476406 amyA Nocardia farcinica IFM 10152 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 1.094121843 1.078307122 1.061032827 1.086167282 1.065313955 1.084393593 1.087629183 1.10909801 1.101347145 1.089740592 1.071922339 1.093496555 1.043415214 1.046167153 0.987545997 1.03869722 1.087174528 1.047603723 379990435 dsrB uncultured bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.838034249 0.907856288 0.801645213 0.769032509 0.839012732 0.80807993 0.824428051 0.821818685 0.796613116 0.818098391 0.884430849 307943181 mer Roseibium sp. TrichSKD4 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseibium; 0.85588907 0.809900422 0.86008894 0.930457918 0.894581098 0.914282061 0.862559887 0.871411265 0.858298191 0.8936943 0.896667682 0.860762506 0.835383893 0.79517069 0.854675727 0.892280113 0.846485978 398227613 dehh109 Bradyrhizobium sp. YR681 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 1.096291624 1.127298624 1.088681779 1.078774238 1.069403491 1.13807581 1.081002976 1.067888568 1.086723497 1.096637228 1.078451882 1.098965593 1.036824309 1.095196785 1.010962524 1.068038327 1.090296721 1.100282636 3157674 nifh unidentified nitrogen-fixing bacteria Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.866903102 0.874758818 0.816101319 0.865354627 0.801048299 0.814315277 0.801090088 0.811920649 0.853479622 0.874492467 0.844600505 0.853900183 0.881372389 334100950 xylj Sphingobium chlorophenolicum L-1 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium;species:Sphingobium chlorophenolicum; 0.848274306 0.860525725 0.822231186 0.829987411 0.818905155 0.849562016 0.822362164 0.815276866 0.829914281 0.847783409 0.809400839 0.815622396 0.80790045 0.817492208 0.812686825 0.853588151 349687068 mdlc Gluconacetobacter oboediens 174Bp2 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter oboediens; 1.081335557 1.055263726 1.038780894 1.056745331 1.077268808 1.0953602 1.057358466 1.057801747 1.063919086 1.097036147 1.023344428 1.045581352 1.025557179 1.059445898 0.979205103 1.027575596 1.048179611 1.066777771 88771707 rubisco Thiovibrio halophilus Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Thiomicrospira; 1.058080591 0.990483166 0.979974732 0.997151802 0.959616425 1.03061162 0.96268019 1.045318878 0.993696045 0.985569157 0.937359378 0.993500986 0.952146243 0.920451162 0.950307267 0.991911281 1.014860169 1.017597734 388279686 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.072564287 1.14646327 1.084117236 1.085659635 1.081914994 1.129707426 1.048181902 1.060398531 1.07775368 1.075522733 1.039435257 1.084893595 1.029984444 1.049165227 1.057004938 1.046449746 1.098007702 1.106430371 85704597 dmdA Roseovarius sp. 217 Sulfur DMSP degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 0.863607932 0.930357546 0.881983588 0.901950208 0.922673099 0.862808806 0.91200551 0.878850622 0.915632445 0.894802304 0.824742605 0.874196988 0.800735652 0.867954934 0.867111644 0.901183275 0.923228446 296924574 arsm Desulfurivibrio alkaliphilus AHT2 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobulbaceae;genus:Desulfurivibrio;species:Desulfurivibrio alkaliphilus; 0.859633298 0.802764337 0.897127304 0.80151938 0.800311176 0.849284825 0.835118739 0.819317039 0.834352107 0.827939829 298244759 arsc Ktedonobacter racemifer DSM 44963 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Chloroflexi;class:Ktedonobacteria;order:Ktedonobacterales;family:Ktedonobacteraceae;genus:Ktedonobacter;species:Ktedonobacter racemifer; 0.789212303 0.805788653 223470353 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.087102002 1.088946222 1.104829031 1.096922729 1.034538522 1.105613279 1.065009185 1.0966487 1.082796592 1.095340039 1.055048467 1.066161231 1.031018649 1.065676402 1.02723539 1.064549587 1.094183613 1.089155052 111024829 bphd Rhodococcus jostii RHA1 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 0.958451892 0.962363679 0.951489882 0.932984639 0.927460799 0.900343166 0.917585419 0.906827507 0.95383332 0.919349217 0.952385659 0.913732462 0.884653142 0.885871957 0.867232973 0.926130881 380684955 dehh109 Phaeospirillum molischianum DSM 120 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Phaeospirillum;species:Phaeospirillum molischianum; 0.994545818 0.932600815 0.991638312 0.998593112 0.970306749 0.992282096 1.007170723 1.007867014 0.974355725 0.957490061 0.973678246 0.968636823 0.917946719 0.863486264 0.90634908 0.927603797 0.976868053 0.924226706 311228592 xylanase Frankia sp. EuI1c Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 0.96424275 0.929869145 0.912687502 0.969239689 0.897736253 0.945486313 0.893637923 0.893443829 0.945620676 0.925634039 0.914011265 0.896172537 0.892177671 0.9333628 0.867584885 0.892692184 0.97296922 0.914085444 94553905 cmci Deinococcus geothermalis DSM 11300 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus geothermalis; 0.997173725 0.976586711 0.998942503 0.964180566 0.981607228 0.916078074 1.012106369 0.909632302 0.986657634 0.912191392 0.975422776 0.92072834 0.92126419 0.853789776 0.987881661 0.937009988 126731410 phn Sagittula stellata E-37 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 1.189832203 1.210810821 1.157197501 1.175043075 1.170820829 1.206312293 1.150321025 1.111412777 1.181279614 1.149273233 1.115265263 1.159680321 1.1324099 1.125057207 1.114160605 1.144339509 1.194847186 1.194861631 218221000 ppx Mitsuokella multacida DSM 20544 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Mitsuokella;species:Mitsuokella multacida; 0.866708555 0.855817585 0.834747422 0.788936788 0.832078151 0.866475065 157285381 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.973492719 0.903011919 0.945814593 0.915102116 0.88808546 0.8546308 0.882141918 0.899893097 0.925772751 0.91430489 0.892324183 0.866326033 0.979505917 0.930897483 222543298 cellobiase Micrococcus antarcticus Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Micrococcus; 0.966551253 0.898816513 0.900161701 0.956048246 0.928028452 0.902568893 0.926396184 0.93498111 0.938577285 0.917390438 0.905231837 0.939520099 0.877078141 0.889999526 0.868669367 0.894670637 0.94749273 0.923043745 304437157 nifh Selenomonas sp. oral taxon 149 str. 67H29BP Nitrogen Nitrogen fixation NA superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas sp. oral taxon 149; 0.92736762 0.937539412 0.892918234 0.970263405 0.945872359 0.903081869 0.930775099 0.944613276 0.94758235 0.942466753 0.950313666 0.971765917 0.878977078 0.897717761 0.864051552 0.884075065 0.942619528 0.944524619 336428331 ara Lachnospiraceae bacterium 3_1_57FAA_CT1 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae; 0.829617258 0.897849785 0.830428079 0.8288729 0.807184176 0.779906881 0.796878758 377529358 merb Gordonia sputi NBRC 100414 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia sputi; 0.923335248 0.894269004 0.917880054 0.946208123 0.87283772 0.849884067 0.897470125 0.929497697 0.950229848 0.861429699 0.87195312 0.934011335 0.858581876 0.877883452 0.853684922 0.906298675 0.914634003 0.871753574 298410754 p450aro Coprinopsis cinerea okayama7#130 Organic Remediation Aromatics polycyclic aromatics superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 0.807412185 0.792542911 0.825365372 0.81255519 0.887407508 0.808210211 0.846110905 0.837520447 0.835756121 0.81318788 0.85434269 0.822127443 0.786350121 0.794023595 0.827767644 0.911818905 211959451 pcag Pseudovibrio sp. JE062 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 0.815133293 0.799823549 0.81260096 0.794735854 0.801247976 262096244 xylose_isomerase_Oomycetes Phytophthora infestans T30-4 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Eukaryota;order:Peronosporales;genus:Phytophthora;species:Phytophthora infestans; 0.902988023 0.929258495 0.921637261 0.906026996 0.941722464 0.938180453 0.911506774 0.936317032 0.936196429 0.911846388 0.883032164 0.921699398 0.906757101 0.926632355 0.918137727 0.913388289 0.972756771 0.965492638 374986961 chitinase Streptomyces bingchenggensis BCW-1 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces bingchenggensis; 1.028634207 1.028968627 1.028716088 1.015760658 1.034527988 1.062344639 1.035622971 0.988907059 1.024139192 1.017818306 1.082993724 1.029341456 0.976698651 0.972376016 0.959612902 0.984984457 1.02140114 1.029880974 119225930 catechol_b uncultured bacterium Organic Remediation Aromatics Other aromatics superkingdom:Bacteria; 0.995155967 0.973956705 1.003749108 0.959309853 0.936709194 0.939489863 0.864119609 0.916164403 0.948143147 0.972736765 0.90483738 0.951352248 0.942355989 0.972193422 0.914754415 0.937917898 0.956125863 0.970283091 164455914 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 0.915046715 0.957675529 0.925813488 0.973623983 0.902466786 0.920742498 0.91915654 0.921398375 0.895997154 0.904598083 0.883905414 0.960016729 0.903929526 0.866807543 0.893093906 0.90790291 0.942908163 0.915552169 365293465 cellobiase Bradyrhizobium sp. ORS 375 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 1.091730461 1.083711977 1.049214872 1.073300775 1.049863683 1.048972173 1.037295081 1.053936398 1.050156422 1.037007348 1.013446274 1.046898321 1.02354621 1.010477664 0.967494739 1.017637962 1.099108037 1.059694321 359372311 GAPDH_Calvin Pseudomonas psychrotolerans L19 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas psychrotolerans; 0.918373739 0.960866731 0.84153761 0.903418788 0.939137673 0.963016785 0.953073249 0.885416777 0.903468747 0.950182577 0.89742852 0.888595642 0.898339 0.917771624 0.862826211 0.91603874 0.962087141 0.985779909 22449909 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.89339139 0.9181391 0.84072921 0.909569597 0.816285007 0.885539352 0.895676937 0.915442473 0.907855239 0.905089969 0.86334102 0.877550245 0.811222802 0.863883425 0.806056493 0.85980553 0.934936289 0.917836462 334337175 xylj Isoptericola variabilis 225 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Promicromonosporaceae;genus:Isoptericola;species:Isoptericola variabilis; 1.288204311 1.228612066 1.256644776 1.246039058 1.244471398 1.262994503 1.221147863 1.23014019 1.244989046 1.212205327 1.225854742 1.242344357 1.220406503 1.197941639 1.23442464 1.225385983 1.264973449 1.220705872 407280155 amie Rhodococcus sp. P14 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 0.924869356 0.885870737 0.932323127 0.952987737 0.91874555 0.941220094 0.913875382 0.912589183 0.928374648 0.916805564 0.929331662 0.95414977 0.823648442 0.825660104 0.805525199 0.817758314 0.903773086 0.963331734 409400363 poba Acidocella sp. MX-AZ02 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acidocella; 0.897022318 0.847718845 0.844029616 0.929034037 0.825839817 0.850526459 0.914504523 0.906407367 0.85135293 0.84893435 0.880395733 0.816938716 0.891377484 0.825747308 162283570 linc Hoeflea phototrophica DFL-43 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Hoeflea;species:Hoeflea phototrophica; 0.886631563 0.899255829 0.857468681 0.881337047 0.815512431 0.851658232 0.843673776 0.911489172 0.893196586 0.854221824 0.947879547 0.890897746 0.810090679 0.870043869 0.838130522 0.910389445 0.921111862 119717967 arsc Nocardioides sp. JS614 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 0.851154206 0.884447926 0.865534542 0.825155161 0.798369026 0.811082615 0.867644259 0.819047989 0.820473291 0.849866037 0.881820897 3334811 vana Streptomyces coelicolor A3(2) Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 1.140329794 1.135977126 1.102655388 1.134278352 1.080719415 1.127239498 1.090663759 1.097809275 1.103605022 1.104850018 1.084567118 1.126569743 1.057378235 1.077940068 1.071339124 1.10123483 1.138561043 1.151090771 87199696 mdlc Novosphingobium aromaticivorans DSM 12444 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium aromaticivorans; 1.178712203 1.17924744 1.161885475 1.171973988 1.162065231 1.167439779 1.152885653 1.149137076 1.154230073 1.174300344 1.154485721 1.170571945 1.132889683 1.129120747 1.115558631 1.140346718 1.199602879 1.168371343 363719072 phn Acetobacteraceae bacterium AT-5844 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae; 0.981921934 0.904515937 0.950176272 0.989561067 0.967040414 0.919674634 0.958190159 0.968056185 0.9463125 0.906384221 0.919741859 0.980773447 0.926779559 0.883081076 0.947973291 0.922380653 0.957068448 0.933440978 12666724 glucoamylase Talaromyces emersonii Carbon Cycling Carbon degradation Starch superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Rasamsonia; 0.915835461 0.883733602 0.848005701 0.889293926 0.897355055 0.862950039 0.911987808 0.901096566 0.900287121 0.814934621 0.854051653 0.812198346 0.883393195 0.920101466 334894513 amyA Halorhabdus tiamatea SARL4B Carbon Cycling Carbon degradation Starch superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halorhabdus;species:Halorhabdus tiamatea; 1.203131194 1.207534681 1.133534837 1.19334195 1.151469274 1.207645112 1.126109552 1.188586709 1.168167759 1.179548401 1.127831739 1.167349042 1.167323857 1.145604218 1.139111344 1.178928363 1.199671976 1.207951657 383644421 badh Sphingomonas elodea ATCC 31461 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas elodea; 0.887972005 0.828536695 0.815018434 0.829149844 0.784448927 0.798456032 0.793280138 0.807014278 0.835857374 156110458 mannanase Bacteroides ovatus ATCC 8483 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides ovatus; 0.947810239 0.958637623 0.919879802 0.929132415 0.911817029 0.943459701 0.915291741 0.914572752 0.933394538 0.956148044 0.915288381 0.942714669 0.892036846 0.879361302 0.843623404 0.890651376 0.920199279 0.96646658 283786071 CsoS1_CcmK Citrobacter rodentium ICC168 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter rodentium; 1.814628647 1.791983827 1.780396553 1.715307192 1.762304765 1.826129021 1.801771363 1.806198915 1.721812716 1.751800508 1.764456739 1.733371113 1.723880925 1.75548169 1.801255156 1.793286981 1.732131552 1.766024141 377528848 poba Gordonia sputi NBRC 100414 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia sputi; 1.040953822 1.071831756 1.014674727 1.054841872 1.076204426 1.156780469 1.022840041 1.007001327 1.040249444 1.071657203 1.132720323 1.038825504 1.035008403 1.002060971 1.00312808 0.999414445 1.137176124 1.055598317 92442487 terc Mycobacterium sp. KMS Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 1.104921416 1.107949973 1.099462214 1.127860321 1.083800216 1.071437467 1.094745272 1.15207094 1.122871005 1.11486389 1.110751061 1.150642446 1.077548964 1.054514068 1.043910076 1.075217341 1.09574451 1.08318335 380870522 nrfa Corynebacterium pseudotuberculosis P54B96 Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium pseudotuberculosis; 0.78175255 0.831170341 0.791179086 0.854769147 375140503 arsc Mycobacterium rhodesiae NBB3 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 0.987831534 0.947312183 0.96429788 0.961006503 0.903456519 0.961001993 0.915584778 0.98323482 0.956517279 0.976406183 0.990622769 0.944761723 0.920422179 0.92092238 0.914713925 0.948278671 0.995695826 1.008225313 258518611 tehb Cardiobacterium hominis ATCC 15826 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Cardiobacteriales;family:Cardiobacteriaceae;genus:Cardiobacterium;species:Cardiobacterium hominis; 0.923787596 0.915319957 0.845963048 0.830726093 0.862647893 0.824487438 0.835163514 0.793438174 0.854317295 0.879619117 133911774 chnb Saccharopolyspora erythraea NRRL 2338 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 1.348212836 1.301089095 1.305601434 1.321519324 1.276939701 1.304537278 1.299474536 1.293563062 1.310817999 1.296499052 1.303069988 1.302408092 1.269468988 1.242886283 1.283655845 1.271939565 1.319127153 1.273367645 89275899 rubisco uncultured gamma proteobacterium Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 0.905670135 0.874055991 0.931514833 0.957215527 0.865335828 0.878504994 0.946668584 0.930343271 0.914983799 0.863891365 1.101789046 0.866068116 0.810784158 0.849923587 0.853919382 0.900786703 0.935986122 298290904 PRI Starkeya novella DSM 506 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Starkeya;species:Starkeya novella; 1.458950323 1.417778704 1.423750398 1.418655826 1.413835031 1.455695809 1.427481172 1.416197427 1.383395333 1.393870279 1.423023488 1.425140624 1.412943874 1.378015167 1.390106594 1.419374343 1.457179015 1.410094943 380732199 cellobiase Corallococcus coralloides DSM 2259 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Corallococcus;species:Corallococcus coralloides; 1.161371523 1.110610245 1.081926086 1.168650732 1.092749275 1.131456956 1.100516292 1.131483696 1.114066277 1.104485609 1.09778904 1.129745906 1.078240646 1.065668603 1.081288037 1.101622222 1.122940902 1.106009464 27381531 poba Bradyrhizobium japonicum USDA 110 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 1.031458884 1.020700582 1.032821977 1.040577966 0.996803716 1.023783144 1.031021977 1.033936517 1.01318319 1.012626819 1.023235018 1.025151389 1.001490793 0.984971576 1.022145516 1.021679034 112361522 fcba consortium cosmid clone pGZ1 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria; 0.923116639 0.948057862 0.884278421 0.892868595 0.890718092 0.960770789 0.87027923 0.850446197 0.88538023 0.932807112 0.887896571 0.921305894 0.862068769 0.912397114 0.878970473 0.889301026 0.944171526 0.94309931 106769227 amyA Roseiflexus sp. RS-1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus; 0.985419565 0.91395271 0.952900149 1.028358066 0.977331871 0.906841892 0.954514715 0.969663096 0.966730025 0.888560215 0.894163706 0.998627202 0.940278996 0.903539569 0.91838953 0.896226578 0.975664299 0.933998284 297193687 phytase Streptomyces pristinaespiralis ATCC 25486 Phosphorus Phytic acid hydrolysis NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces pristinaespiralis; 1.679558788 1.630741349 1.633353094 1.638799458 1.581116732 1.664294312 1.596155807 1.613000115 1.62110992 1.612983604 1.619765075 1.626604168 1.562964159 1.569152925 1.568845279 1.616177039 1.64646347 1.599802818 209520879 ppx Burkholderia sp. H160 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 1.081545425 1.102870824 1.06250005 1.082083172 1.05703365 1.071546172 1.016237197 1.02130374 1.066202152 1.01171577 1.03849656 1.053420681 1.050687309 1.020297811 1.04594255 1.01030746 1.112645763 1.070505035 302582140 TIM Gallionella capsiferriformans ES-2 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Gallionellales;family:Gallionellaceae;genus:Gallionella;species:Gallionella capsiferriformans; 0.874981999 0.909255131 0.914189235 0.934040059 0.804191153 0.902381109 0.913695712 0.899297226 0.914966931 0.866455786 0.863088546 0.921109073 0.829606768 0.839568182 0.806908786 0.903287358 0.936860198 157285567 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.405421124 1.405754528 1.339627665 1.321668309 1.357046141 1.40473812 1.349075342 1.364761473 1.32685673 1.349985248 1.335644707 1.331115848 1.32383829 1.328919841 1.340428653 1.365111053 1.342645814 1.367407347 73748499 codh Dehalococcoides sp. CBDB1 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 0.859488762 0.857682053 0.906824541 0.836913124 0.815459516 0.859476338 0.832308503 0.859511554 0.805880769 0.808342438 0.849542157 0.894116942 0.814436224 0.836182899 0.800943706 296164835 urec Mycobacterium parascrofulaceum ATCC BAA-614 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium parascrofulaceum; 1.411347035 1.371820616 1.369270712 1.379653862 1.362421142 1.391657247 1.337765202 1.370041659 1.363695059 1.36610339 1.368015696 1.379655469 1.345533044 1.339972712 1.324991016 1.367515826 1.379664676 1.349301617 209515694 PRI Burkholderia sp. H160 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 1.190412248 1.236763357 1.149471055 1.159187653 1.142853598 1.205151763 1.135161946 1.117107328 1.122423804 1.197888035 1.175413894 1.157168833 1.16146331 1.166861566 1.10107885 1.151658583 1.179372863 1.209503938 170654723 cysI Methylobacterium radiotolerans JCM 2831 Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium radiotolerans; 1.150449604 1.139505763 1.129265985 1.14935244 1.116952378 1.155814246 1.094563431 1.130929382 1.149224095 1.119107854 1.121399071 1.159464015 1.083836156 1.073066249 1.049116104 1.088974138 1.15889335 1.121590072 91682461 ben_bcla Rhodopseudomonas palustris BisB5 virulence NA NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 1.251379602 1.191169701 1.16496603 1.229839218 1.210958517 1.225334955 1.199947182 1.22600734 1.217766968 1.206019419 1.183640435 1.219769711 1.177867863 1.180789187 1.189140814 1.198596806 1.216620436 1.184658255 85824319 poba Roseobacter sp. MED193 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 0.871998047 0.838051733 0.881381452 0.879567363 0.860588146 0.870517286 0.866082533 0.827864224 0.887298098 0.838546368 0.826391681 0.861944574 374320561 arsc Paenibacillus terrae HPL-003 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus terrae; 1.041729798 1.068985147 1.036729552 1.084710438 1.071080689 1.048658559 1.124972722 1.0612947 1.092950975 1.077950574 1.091502018 1.090254191 1.07835309 1.03722812 1.043638237 1.027570734 1.055081375 1.039810943 260422525 atzb Citreicella sp. SE45 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Citreicella; 0.932284488 0.927092039 0.949871739 0.943262207 0.949246448 0.980607767 0.959434108 0.941509262 0.954385228 0.949475698 0.928037177 0.911627367 0.945722797 0.915266058 0.885993 0.890536331 0.984199077 0.921420333 317046977 alginase Pantoea sp. At-9b Carbon Cycling Carbon degradation Alginate superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 0.901165907 0.884886135 0.860906883 0.906534571 0.857616015 0.860145987 0.858330728 0.848650729 0.881544345 0.894737744 0.834586124 0.890138309 0.823941742 0.818128021 0.895833398 0.881985342 0.896606221 259346420 pcag Silicibacter sp. TrichCH4B Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 0.884536738 0.914429325 0.899600443 0.922539303 0.849399802 0.921199212 0.881655892 0.902299182 0.967900652 0.928158685 0.83875204 0.899396701 0.846730576 0.877371732 0.95329028 0.871105612 0.928052671 0.994679143 226424956 phenol_oxidase Trametes sp. C30 Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Trametes; 0.956773256 0.971234156 0.911077523 0.995342607 0.941208741 0.932700751 0.974664883 0.993194886 0.954478793 0.940480801 0.972289578 0.921012047 0.888760197 0.900572136 0.90338707 0.95948913 0.976328508 381403521 ppx Pantoea sp. Sc1 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 0.930924197 1.0337126 0.905186567 0.940691876 0.938304376 0.93287226 0.939241838 0.885974799 0.915087277 1.003373865 0.98055463 0.936795454 0.909824067 0.966646222 0.931652764 0.932422997 0.953133579 0.938322176 120609826 vana Acidovorax avenae subsp. citrulli AAC00-1 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax citrulli; 1.080125748 1.085653872 1.096174718 1.118143524 1.097006488 1.108936658 1.120360428 1.129796667 1.091439467 1.042125886 1.079323385 1.078053359 1.043430107 1.018503255 1.005054056 1.016650166 1.092521413 1.094993936 87280984 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.891155144 0.992765747 0.929896026 0.870282046 0.926997565 0.880712253 0.896677205 0.871308528 0.853098345 0.91803179 0.908372436 0.890823217 0.903345661 0.890186511 0.906874154 0.908827098 0.853961489 0.919254181 296845173 ben_bcla Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 virulence NA NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Nocardiopsis;species:Nocardiopsis dassonvillei; 1.045153158 1.032715603 1.043752093 1.078952121 1.06381184 1.055577167 1.056412079 1.046753766 1.055498683 1.031768509 1.03679251 1.080303457 0.990605419 1.013534276 0.997101229 1.008678455 1.04151185 1.027653322 162568499 aoxb Alcaligenes sp. T12RB Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Alcaligenes; 1.093977082 1.063320311 1.082058656 1.071991917 1.069450948 1.071347468 1.062128743 1.040834 1.068944102 1.12297786 1.095093647 1.10516682 1.037502892 1.033813648 1.005386043 1.048041468 1.125158258 1.120542519 187716020 ppx Burkholderia phytofirmans PsJN Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 1.225832254 1.1628039 1.18414969 1.228415892 1.190418986 1.241959794 1.201184544 1.18946927 1.207884074 1.205731142 1.200546288 1.202390406 1.196701253 1.173980269 1.154494685 1.171396732 1.230017174 1.179962794 90108251 tktA Rhodopseudomonas palustris BisB18 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 1.125190046 1.032966279 1.037602185 1.058680482 1.044634867 1.084692162 1.01315149 1.031037706 1.040710695 1.077204848 1.052452925 1.057930524 1.035263235 1.062688505 0.995543778 1.058492903 1.043334416 1.047750955 67541943 rgl Aspergillus nidulans FGSC A4 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 0.851826476 0.894285848 0.886748193 0.863209388 0.86923168 0.879614063 0.876150473 0.903212902 0.892582339 0.898370058 0.894965769 0.888371621 0.874528128 0.867924416 1.021827198 0.928465849 0.881544987 0.993636747 119183920 phospholipase_C_fungi Coccidioides immitis RS Carbon Cycling Carbon degradation Phospholipids superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;genus:Coccidioides;species:Coccidioides immitis; 0.938688482 0.879964439 0.891833634 1.021312915 0.917977007 0.922967952 0.957628109 0.935428666 0.998632783 0.908917571 0.957571666 0.965526672 0.909358433 0.879738509 0.877848147 1.067959595 0.957418916 0.893141794 422314083 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.878165845 0.903680682 0.895253614 0.798596225 0.862782849 0.864964399 0.894599693 0.879651567 0.833314589 0.820243714 0.882509453 0.91683646 112774547 xylg Delftia sp. AN3 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia; 1.201238871 1.25064135 1.183198142 1.184228564 1.169579215 1.189729237 1.146832754 1.171328086 1.166853449 1.195004907 1.13721229 1.168679242 1.177391118 1.166390443 1.138289919 1.138650186 1.148497988 1.1953215 297549360 linb Ktedonobacter racemifer DSM 44963 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Chloroflexi;class:Ktedonobacteria;order:Ktedonobacterales;family:Ktedonobacteraceae;genus:Ktedonobacter;species:Ktedonobacter racemifer; 1.059948436 0.984632093 1.032322561 1.074087282 1.073905203 1.024980093 1.042618548 1.06723126 1.054485045 1.026147385 1.009505747 1.066694675 0.993087345 0.957757995 0.967518707 1.052054952 1.043435613 1.014388579 334261838 narg uncultured organism Nitrogen Denitrification NA 0.876960901 0.824672725 0.887035195 0.844161116 0.883796098 0.856705622 0.849533132 0.801934607 0.845774875 0.875555726 0.805851368 0.834373061 0.853352494 0.829164574 0.888886566 0.910942307 283481816 mcra uncultured methanogenic archaeon Carbon Cycling Methane Methanogenesis superkingdom:Archaea;phylum:Euryarchaeota; 0.88834109 0.843528058 0.914878005 0.870834968 0.829656806 0.906042124 0.860372752 0.838014077 0.855009056 0.796831615 0.889437554 0.796580345 0.867200423 395005583 poba Acidovorax sp. CF316 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 1.149335088 1.153818542 1.156152042 1.138186552 1.134606205 1.147392907 1.116497122 1.132825353 1.127832798 1.133573905 1.151972041 1.13274849 1.09644585 1.097210579 1.050200118 1.101688036 1.141764238 1.13966332 254403135 mannanase Streptomyces sviceus ATCC 29083 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 0.953569768 0.95353088 0.96187707 0.980359359 0.955160893 0.932339448 0.957558262 0.988083629 0.962818693 0.971674343 0.923720659 0.956919506 0.895645343 0.933284186 0.930936613 0.940891146 0.931528319 0.947852828 365835534 cysJ Hafnia alvei ATCC 51873 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Hafnia;species:Hafnia alvei; 0.794333171 0.758356113 297547756 acetylglucosaminidase Ktedonobacter racemifer DSM 44963 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Chloroflexi;class:Ktedonobacteria;order:Ktedonobacterales;family:Ktedonobacteraceae;genus:Ktedonobacter;species:Ktedonobacter racemifer; 1.193582061 1.178183216 1.200345044 1.211766656 1.186448197 1.180786447 1.166211422 1.144802365 1.168934948 1.17705822 1.146040334 1.206649576 1.158185432 1.15217494 1.156714646 1.158161505 1.202712356 1.187153468 332304637 Sir Glaciecola agarilytica 4H-3-7+YE-5 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Glaciecola; 0.816616239 0.857802516 0.849073905 0.858295425 0.868365725 0.856325095 0.889629103 0.830596308 0.857142204 0.835614609 0.930741541 0.87352315 0.948121169 0.890712102 37651313 nahb Xanthobacter polyaromaticivorans Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter; 0.998649636 1.043248551 0.989651865 1.026883693 1.033826413 1.034663979 1.011394658 1.005027311 1.010701755 1.042308606 1.033465156 1.022688249 1.021755538 1.003291583 1.010756659 1.027526209 1.033454205 363714682 ppx Acetobacteraceae bacterium AT-5844 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae; 1.077470484 1.048889116 1.025822249 1.019690331 1.015221426 1.003834503 1.038944973 1.066197889 1.042490693 0.985398065 1.001466021 1.023116206 0.976899183 0.939552341 0.918022822 0.958719016 0.977997127 1.005016101 58002781 ppx Gluconobacter oxydans 621H Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconobacter;species:Gluconobacter oxydans; 1.377097648 1.387852008 1.406646168 1.386625723 1.366950504 1.397214703 1.362380359 1.369850652 1.363944496 1.363055947 1.342286602 1.378066116 1.336995639 1.32502863 1.386877625 1.39032549 1.379643537 1.358560703 162451553 norb Sorangium cellulosum 'So ce 56' Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 0.865341384 0.872857885 0.860830305 0.852211729 0.872782937 0.892635666 0.868309074 0.883100541 0.846932331 0.928860453 0.860863712 0.839872414 0.855634719 0.83263841 0.874470346 0.890681519 330831676 chitinase Aeromonas veronii B565 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas veronii; 1.079439445 1.110120394 1.031925813 1.04606061 1.048991888 1.068889797 1.030166533 1.045005327 1.037234746 1.040482861 1.016857666 1.040288202 1.03438806 1.03190092 1.013381751 1.06489403 1.050022723 1.036481427 311225786 cutinase Frankia sp. EuI1c Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 1.05003644 1.10055016 0.977456635 1.051317387 1.029339017 1.016966109 1.012811511 1.048229419 1.02830786 1.004203661 0.978428502 1.039075642 1.019958566 1.010039981 0.978791254 1.009195956 1.067422192 1.042603173 111020867 xylj Rhodococcus sp. RHA1 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 1.099012173 1.142712732 1.079553914 1.167347167 1.13221173 1.104826349 1.122268713 1.157863701 1.139518232 1.095238508 1.110052121 1.164703123 1.118291025 1.102080614 1.095953338 1.112868747 1.092053756 1.071113963 270298598 fthfs uncultured rumen bacterium Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria; 1.16014361 1.090741392 1.119669396 1.141850651 1.134517337 1.106309221 1.219991208 1.146814985 1.13743143 1.120672711 1.127613616 1.142421078 1.106020214 1.077298663 1.105307568 1.101642483 1.123432874 1.095972355 86283192 pgk Rhizobium etli CFN 42 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 0.865727395 0.843265196 0.845240141 0.824708335 0.860307101 0.829710862 0.859610819 0.882575277 0.820243898 0.883376247 0.92248953 221737580 vdh Agrobacterium vitis S4 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium vitis; 0.889477033 0.866985627 0.850730861 0.875852028 0.842645983 0.889295225 0.802380099 0.81773093 0.869802872 0.84263127 1.054591999 0.839793424 0.844349317 0.850644745 0.893938349 354721331 ppx Enterobacter mori LMG 25706 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter mori; 0.848923299 0.824080747 0.835504209 0.876331708 0.840990865 0.864539022 0.845218288 0.923348741 0.869251781 0.798412046 0.878741762 0.872320727 0.855766835 365419051 urec Bradyrhizobium sp. STM 3843 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.969164598 0.985819202 0.995827863 0.994578034 0.896922196 0.957928802 0.907688224 0.955995524 0.989354501 0.932767825 0.949109039 0.929040924 0.903750336 0.92195591 0.896306391 0.903765119 0.998269869 0.966639725 169289 mnp Phanerochaete chrysosporium Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Corticiales;family:Corticiaceae;genus:Phanerochaete; 0.934436255 0.919837389 0.878954045 0.920497661 0.879033904 0.910502986 0.907326616 0.885020017 0.876971157 0.893746005 0.922370369 0.886371209 0.879505345 0.857542499 0.902025194 0.856067549 0.921101942 0.914112196 25900630 fthfs Desulfovibrio vulgaris Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 0.84846034 0.862964854 0.833029945 0.83364185 0.849141571 0.80978005 0.879482669 0.814056689 0.845689239 0.827630063 0.845608624 0.890878121 288913747 arsc Azospirillum sp. B510 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum lipoferum; 0.980118416 0.955257766 0.963574093 0.969725759 0.946808229 1.012875265 0.968511514 0.914245145 0.931727345 0.984232829 0.974813642 0.924578906 0.916261572 0.97487708 0.872185745 0.893981437 0.956355594 0.971861805 505629 mnp Phanerochaete chrysosporium Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Corticiales;family:Corticiaceae;genus:Phanerochaete; 1.0128135 0.97986585 0.934666892 0.932943228 0.945040221 0.982212142 0.897379874 0.89298658 0.988293328 0.942349709 0.944851427 0.955423294 0.918375726 0.953990099 0.952026663 0.898124834 0.979893389 1.024029345 298590857 nitrilase Afipia sp. 1NLS2 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Afipia; 1.044116442 0.964270022 0.93870573 1.012495881 1.007594888 0.940485888 0.941413357 0.999424847 0.994507212 0.930332995 0.945802774 1.036271089 0.962363459 0.897582806 0.939877406 1.034315425 0.955329584 0.937595843 372280255 phn Oceanicola sp. S124 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola; 0.897846869 0.945289182 0.877648776 0.900833685 0.806672055 0.940865002 0.836013982 0.941258338 0.932906965 0.93073299 0.856822916 0.861620529 0.787375577 1.214079564 0.876150449 0.935916754 0.949879711 88863487 nbac Jannaschia sp. CCS1 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Jannaschia; 1.382499864 1.356344356 1.380773084 1.404912327 1.387860695 1.368707704 1.361119216 1.413092232 1.355041936 1.350915443 1.368535807 1.407525858 1.356016552 1.329878235 1.382641759 1.370161715 1.339420132 1.324703958 113473679 cara Sphingomonas sp. KA1 Organic Remediation Aromatics Heterocyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 0.979930428 1.022787658 0.921732474 0.922565342 0.882698155 0.937579627 0.934622252 0.944530502 0.945242706 0.910134143 1.043369016 0.948998375 0.835471751 0.858559534 0.825063023 0.919462029 0.937144736 1.036630339 71734541 tktA Pseudomonas syringae pv. phaseolicola 1448A Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas savastanoi; 1.493877912 1.449937468 1.445646264 1.453420872 1.433675284 1.466525229 1.436226454 1.458564874 1.437222866 1.422410856 1.439088404 1.448710801 1.42118187 1.400398201 1.439521747 1.434092949 1.458073955 1.425887188 359826800 endoglucanase Clostridium clariflavum DSM 19732 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium clariflavum; 0.897193977 0.898065811 0.882453727 0.85679056 0.870809685 0.964356537 0.802836521 0.905626284 0.923058128 0.871988218 0.842604521 0.868235404 0.913511244 0.842809728 0.859148626 0.967037508 0.918588764 296536447 ppx Roseomonas cervicalis ATCC 49957 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Roseomonas;species:Roseomonas cervicalis; 1.31512061 1.282052743 1.292416265 1.324548082 1.254191988 1.306959222 1.279745228 1.311002827 1.280866759 1.281929308 1.251070136 1.284635511 1.254831221 1.242609378 1.251910141 1.28340249 1.329188491 1.291634755 165879995 exoglucanase uncultured fungus Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi; 1.091449918 1.083002393 1.029164568 1.13150469 1.031389437 1.133865501 0.982299649 1.013749979 1.054796551 1.046333493 1.019085045 1.02967719 0.995336574 1.058828499 1.055025364 1.049418689 1.113418264 1.08206516 197119647 terc Geobacter bemidjiensis Bem Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter bemidjiensis; 1.063425214 0.896570174 1.024616407 0.942310622 1.210368948 1.112738721 1.230515517 0.839349448 0.960153558 1.163843436 1.168825611 1.057991647 1.152665055 1.087218395 0.918851716 1.019949546 0.925703312 0.949074712 4884719 sdsa Pseudomonas putida Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 1.3804435 1.341884461 1.351051298 1.363276268 1.335196636 1.346929911 1.342784039 1.343334877 1.359791317 1.349595806 1.344005267 1.35314283 1.30199546 1.302049882 1.276675608 1.315505169 1.348753154 1.313646768 91807182 nosz uncultured alpha proteobacterium Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 0.829277509 0.846715861 0.892425653 0.861175729 0.86416782 0.859737896 0.838885832 0.860071161 0.850032454 0.853513464 0.84765739 0.856429877 0.823314924 0.845439316 0.82113947 169126477 ligninase Taiwanofungus camphoratus Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Taiwanofungus; 0.982515045 0.903524078 0.867338233 0.947733395 0.872931059 0.886271904 0.858967364 0.894785122 0.927617988 0.870714895 0.84727736 0.923854648 0.881900094 0.833892755 0.849305676 0.864030417 0.946201969 0.913073927 67904096 alpha_galactosidase_fungi Aspergillus nidulans FGSC A4 Carbon Cycling Carbon degradation Other superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 0.824473406 0.882598181 0.785482446 0.808221228 0.816227872 0.812864206 0.8213003 0.842942259 0.894086159 229321908 cutinase Rhodococcus erythropolis SK121 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 0.869942717 0.886102974 0.86966705 0.936210733 0.837972202 0.872017644 0.873587913 0.871628733 0.900750403 0.899350667 0.913302577 0.823549078 0.838341671 0.771622909 0.856374843 0.869471897 0.844136004 291543758 pectinase (pectate_lyase) Ruminococcus sp. 18P13 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus;species:Ruminococcus champanellensis; 0.841616039 0.82639558 0.8410273 0.830914618 0.817346953 0.852547819 0.838647117 0.822234762 300023953 GAPDH_Calvin Hyphomicrobium denitrificans ATCC 51888 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium;species:Hyphomicrobium denitrificans; 0.850184373 0.896712489 0.828035918 0.856074121 0.816205304 0.799153253 0.857359925 0.814942403 0.814223842 0.860109334 0.811534826 0.853492644 0.804478817 384261977 urec Rhodospirillum photometricum DSM 122 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum photometricum; 0.875645486 0.903783172 0.884753128 0.971503299 0.926191582 0.923608101 0.931730965 0.929959944 0.937481556 0.933461262 0.879935818 0.936146963 0.928881262 0.939147769 0.834569626 0.903701668 0.917100274 0.949135226 209401770 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.441644023 1.368030207 1.412809931 1.424937147 1.387722433 1.389128222 1.392193167 1.440032135 1.414425413 1.37914863 1.39676687 1.432432268 1.377572709 1.351979684 1.383528301 1.408975585 1.384286883 1.358334207 118703956 vana Sphingomonas wittichii RW1 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 0.88605263 0.875868032 0.831475968 0.871226775 0.89732987 0.903216827 0.867517642 0.908839531 0.866677905 0.888440261 0.827733122 0.879836608 0.825686873 0.820600195 0.772876031 0.843870854 0.859918934 0.890003319 298674844 mcra Methanohalobium evestigatum Z-7303 Carbon Cycling Methane Methanogenesis superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosarcinaceae;genus:Methanohalobium;species:Methanohalobium evestigatum; 0.990745125 0.939936829 0.94264201 0.980616796 0.965232524 0.97697511 0.959539535 0.940727476 0.988865024 0.98847933 0.959652235 0.999003639 0.935453788 1.003236948 0.984683185 0.917777558 0.924702915 0.982579648 302457985 amyA Streptomyces himastatinicus ATCC 53653 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces himastatinicus; 0.8469996 0.872772596 0.858926084 0.901653622 0.888171033 0.88712089 0.868937516 0.862591558 0.914672305 0.957930968 0.835025999 0.884568316 0.897624057 0.932253554 0.832022117 0.856510612 0.89968696 0.885826511 340526310 ppx Amycolatopsis mediterranei S699 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 1.23627807 1.260178784 1.21189933 1.22143414 1.223122147 1.281587216 1.222047527 1.223550758 1.211497257 1.249888697 1.221375271 1.216877671 1.217294491 1.260240723 1.190886488 1.223046688 1.22753663 1.26259502 378784449 terc Blastococcus saxobsidens DD2 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Geodermatophilaceae;genus:Blastococcus;species:Blastococcus saxobsidens; 1.019983761 1.089478872 1.028804494 1.061866199 1.0776824 1.087451515 1.067018615 1.016987344 1.049548719 1.0561206 1.020947318 1.053614435 1.023450502 1.04257645 1.040436134 1.026733353 1.054341765 1.058270091 378401757 PRK Rhodospirillum photometricum DSM 122 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum photometricum; 0.904874343 0.887307053 0.911247186 0.901022056 0.914236801 0.883789476 0.912509648 0.897540263 0.925401882 0.87112176 0.861122499 0.885458639 0.831871654 0.822248203 0.832156116 0.796681359 0.875793319 0.908116605 76057489 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.816682891 0.870894893 0.822650249 0.816821711 0.82900105 0.865074992 0.823612466 0.820091921 0.817498593 0.804837503 0.894632517 0.875800767 0.814667526 192284125 poba Rhodopseudomonas palustris TIE-1 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 0.876638953 0.974474869 0.946089146 0.967124875 0.939187597 0.966854685 0.966602883 0.876049925 0.958715717 0.919820551 0.932234151 0.886799323 0.913658736 0.99659722 51893626 merb Symbiobacterium thermophilum IAM 14863 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XVIII. Incertae Sedis;genus:Symbiobacterium;species:Symbiobacterium thermophilum; 0.826565128 0.874030477 0.880811631 0.842406449 0.848244878 0.873199382 0.786037765 0.79617853 0.876651489 0.853196346 0.80466709 0.780490691 0.883049517 0.822138004 0.8801283 71402608 nasa Synechococcus sp. UW92 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 0.969700201 1.038031505 1.055120511 1.035468902 0.934360767 0.993172759 0.956005826 1.030095664 1.012842868 1.034150956 1.009832769 1.009179253 0.963388127 0.970078454 0.978570585 0.96186094 1.040613066 1.055379456 406718183 mult_ring_12DiOx uncultured bacterium Organic Remediation Aromatics Other aromatics superkingdom:Bacteria; 1.055643894 1.049432743 1.085905396 1.044456438 0.983893189 1.051592417 0.980925985 1.024816947 1.067514013 1.021235181 1.039220021 1.042077392 1.003824191 1.038297079 1.03725348 0.995245352 1.064279887 1.013475005 356879769 endoglucanase Azospirillum brasilense Sp245 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum brasilense; 0.815783603 0.851175476 0.82071344 0.872542685 0.883597667 0.837743815 0.814291593 0.845178443 0.792541521 0.813045317 30525501 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.000481928 1.030024874 1.023496669 0.944443186 0.928313197 0.967101605 0.949767986 0.97732991 0.976277875 0.992964717 1.010555303 1.00463554 0.945144661 0.996634849 0.964442268 0.935193723 0.951951486 0.954241817 99030638 ppk uncultured bacterium Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria; 0.967458788 0.957590531 0.99301201 0.967295719 0.981845662 0.974099479 0.976506214 0.975942539 0.938899701 0.952845559 0.961215501 0.942764412 0.913066442 0.944918193 0.911610573 0.919157158 0.980592142 1.000030106 116514034 fthfs Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus delbrueckii; 0.892948686 0.86694249 0.833064099 0.847886268 0.804086273 0.843769605 0.863337522 0.836976242 0.815850525 0.804771979 0.815777234 0.849763768 139003137 nifh uncultured nitrogen-fixing bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 1.011535339 1.056399781 1.018211825 1.004425161 1.007202407 1.013376183 1.017053803 0.986696769 1.003592683 1.003321454 1.013471874 0.988542494 1.009202336 0.960251989 0.925777142 0.976549658 1.008598978 0.977776627 402259493 nitrilase Sphingomonas sp. LH128 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 0.989741257 1.003712577 0.995468315 0.9988949 1.011069434 1.031606291 1.015156988 0.982384263 0.998284211 1.034531242 1.017040564 0.990139782 0.995354538 0.974378531 0.934115982 0.940485374 1.036933422 1.020777442 147885996 phenol_oxidase uncultured bacterium Carbon Cycling Carbon degradation Lignin superkingdom:Bacteria; 1.300854773 1.271005741 1.268439662 1.271290742 1.257409478 1.283870105 1.248820549 1.24549632 1.264940072 1.260992613 1.277486931 1.275280466 1.276923108 1.219711848 1.235627345 1.233676089 1.293244267 1.232961857 170946644 phospholipase_A2_fungi Podospora anserina S mat+ Carbon Cycling Carbon degradation Phospholipids superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Lasiosphaeriaceae;genus:Podospora;species:Podospora anserina; 1.206304667 1.212819123 1.175495258 1.166463747 1.151175982 1.213934252 1.171288378 1.161060139 1.171980113 1.182938852 1.144827586 1.182598823 1.133379273 1.147854689 1.096565726 1.135815102 1.178128408 1.21027089 323364938 nifh uncultured microorganism Nitrogen Nitrogen fixation NA 0.875969835 0.857034044 0.868582919 0.878913626 0.830301015 0.856349963 0.849475471 0.903278393 0.833995979 0.82831485 0.822427011 0.89230713 0.891183449 393792767 amyA Sulfuricella denitrificans skB26 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Sulfuricella;species:Sulfuricella denitrificans; 1.117197663 1.074831241 1.099365926 1.07968285 1.032295574 1.081883921 1.01413106 1.04764404 1.07510032 1.088083462 1.092171006 1.06440423 1.047826883 1.076938754 1.075801651 1.082687349 1.093330151 1.097478506 317111297 Sir Geobacillus sp. Y412MC52 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 0.953902061 0.912140266 0.937807504 0.952897541 0.935817708 0.941011565 0.884075266 0.938319252 0.967387737 0.960758571 0.963597431 0.954418068 0.90752252 0.913876194 0.884177394 0.888119634 0.940958139 0.907192616 357053263 cda Clostridium clostridioforme 2_1_49FAA Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium clostridioforme; 0.778817341 0.800939222 0.785230505 0.837976001 0.769481304 0.844614306 0.839271547 0.798333108 357428230 alkk Azospirillum lipoferum 4B Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum lipoferum; 1.155327282 1.08136428 1.075285522 1.120174483 1.019256543 1.15131771 1.025075859 1.03427839 1.10426827 1.065424896 1.077014323 1.072985539 1.049109813 1.039729657 0.991610317 1.043705835 1.116981376 1.090486979 395227119 one_ring_23diox Citrobacter sp. A1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter; 1.021484582 1.028952771 1.031214124 1.020297398 1.026982594 0.985726485 1.008577177 0.980529447 1.029478424 1.022616613 1.049821542 1.023290994 1.004122819 0.958989802 0.966812401 0.996181758 1.068859472 1.037508171 353674273 cysI Brenneria sp. EniD312 Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Brenneria; 0.87273964 0.821048599 0.83459035 0.874357133 0.867118663 0.84352482 0.862239752 0.905435394 0.845928125 0.858527427 0.879850067 0.84435471 0.828579551 0.888997694 0.898507292 116668980 amyA Arthrobacter sp. FB24 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 0.847266309 0.883303106 0.841625734 0.87658684 0.840327526 0.916094678 0.855640821 0.834796529 0.804492951 0.891342345 0.917459441 0.915606805 0.820909656 0.870079343 0.855795995 0.895467636 0.852078317 0.885910477 365891038 exaa(moxf) Bradyrhizobium sp. STM 3809 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 1.534513965 1.526269648 1.502784886 1.511855373 1.506447683 1.550549891 1.499391886 1.518968195 1.475145148 1.470203131 1.498231902 1.488750162 1.473480077 1.460459862 1.491361693 1.512806147 1.522099254 1.48562359 114705251 amyA Fulvimarina pelagi HTCC2506 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Fulvimarina;species:Fulvimarina pelagi; 1.083623308 1.009926925 1.058346648 1.071877726 1.045605029 1.070612638 1.09523754 1.091721864 1.124137861 1.073913053 1.064901558 1.082474558 1.027138659 1.040619077 1.012746119 1.047893342 1.129878364 1.110626792 359837665 amyA Actinoplanes sp. SE50/110 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes; 1.02311734 0.948352304 0.986692378 0.999949803 0.907284093 0.889634394 0.892179515 0.940699433 0.976659144 0.937742896 0.981789949 0.986150439 0.960956417 0.944253386 0.970108095 0.89397305 1.008680831 0.950660036 302471878 amyA Streptomyces viridochromogenes DSM 40736 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces viridochromogenes; 0.892469905 0.911525004 0.892224879 0.937278423 0.884663668 0.953339148 0.876838911 0.886111365 0.933724044 0.90480564 0.880251234 0.905035506 0.865497693 0.884195081 0.837645528 0.913485078 0.97915845 0.943140261 322370778 glucoamylase Haladaptatus paucihalophilus DX253 Carbon Cycling Carbon degradation Starch superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haladaptatus;species:Haladaptatus paucihalophilus; 0.985970248 0.983123882 0.955952591 1.027088884 0.973786082 1.018108858 0.970980161 0.949287538 0.987004475 0.997299646 1.001627219 1.010346149 0.980128465 0.963942517 0.941926892 0.991669739 1.029261708 0.957277514 237800946 phn Pseudomonas syringae pv. oryzae str. 1_6 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas coronafaciens; 0.790303383 0.855476955 0.827971929 0.822629186 0.828055651 0.798676993 0.835747557 380470559 ligninase Colletotrichum higginsianum Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Glomerellaceae;genus:Colletotrichum; 1.221421151 1.17198278 1.173574208 1.20900881 1.153294756 1.200222342 1.163413366 1.186941724 1.174658823 1.144328135 1.180321425 1.169723214 1.188486362 1.104727265 1.126974612 1.168690803 1.189821614 1.136689729 238505300 phospholipase_A2_fungi Aspergillus flavus NRRL3357 Carbon Cycling Carbon degradation Phospholipids superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus flavus; 1.067287377 1.031018591 1.080633517 1.10072762 1.074704779 1.051207745 1.086070103 1.098299605 1.08058745 1.072404827 1.054656669 1.070957126 1.067913043 1.004042693 1.011900495 1.004743915 1.038532134 0.93523784 209907326 arsc Enterobacter cancerogenus ATCC 35316 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter cancerogenus; 0.847935968 0.806963241 0.816691145 0.878859727 0.805051548 0.82461132 0.816071739 0.840256718 0.834916152 0.817245154 0.814877078 0.831585242 0.859673477 281357717 rgl Victivallis vadensis ATCC BAA-548 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Lentisphaerae;class:Lentisphaeria;family:Victivallaceae;genus:Victivallis;species:Victivallis vadensis; 1.161234941 1.132147296 1.107865047 1.181034983 1.120006514 1.154024076 1.116608212 1.153086203 1.113856329 1.109128376 1.113759387 1.127659269 1.104610341 1.073046696 1.092444132 1.126855952 1.170585608 1.09070147 329935878 poba Streptomyces griseoaurantiacus M045 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseoaurantiacus; 1.117283287 1.01496329 0.951693106 0.959471433 0.912916327 0.916592882 0.925429124 0.953477972 0.966369363 0.908938404 0.951683067 0.964151318 0.885865531 0.920315277 0.932448051 0.943764338 0.933951726 0.939475299 164507582 nirk Sinorhizobium sp. R-31759 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium; 0.845523984 0.881184182 0.834068898 0.859113579 0.881477337 0.813168399 0.830365023 0.812013939 0.809820877 0.832716182 0.842323788 0.822694693 0.833279373 0.882570231 0.828785574 383776190 acetylglucosaminidase Actinoplanes missouriensis 431 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes;species:Actinoplanes missouriensis; 1.064410958 1.079855101 1.015733408 1.044340397 1.042821443 1.064599737 1.038773256 1.049868383 1.034472636 1.029196478 1.002768312 1.015478351 1.029844446 1.013757981 1.006331565 1.018648095 1.051969651 1.044825247 511302 exoglucanase Phanerochaete chrysosporium Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Corticiales;family:Corticiaceae;genus:Phanerochaete; 0.913676329 0.953341542 0.851123088 0.934970728 0.858847424 0.920576903 0.903169779 0.859164236 0.946602971 0.823935124 0.854437737 0.864088463 0.828281731 0.908825117 0.91306683 109452546 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.003414988 0.95487007 0.924678823 0.984355732 0.95908086 0.977897475 0.95419773 0.963261079 0.973444358 0.928765221 0.943837936 0.956836139 0.924898275 0.924748284 0.882920588 0.956314031 0.989903775 0.915335624 297561212 bphF1 Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Nocardiopsis;species:Nocardiopsis dassonvillei; 0.98069192 0.957298568 0.939204365 0.999271166 0.936810398 0.960266144 0.938041639 0.967992351 0.967939233 0.963527572 0.945205882 0.954039764 0.901470571 0.93679201 0.876255699 0.907679671 0.978406945 0.961334563 262222439 TIM Grimontia hollisae CIP 101886 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Grimontia;species:Grimontia hollisae; 1.023309691 1.020425203 1.018269253 1.041939593 1.024333932 1.017994727 0.981157247 1.000691668 1.016561783 1.005160096 0.998613326 1.003573097 0.995686624 0.980727279 0.911867939 0.965889827 1.022069521 0.984565376 29610039 pme Streptomyces avermitilis MA-4680 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 1.036421349 0.978322377 0.997007983 1.029334211 1.003198101 0.985443156 1.001649352 0.991023342 1.02901932 0.991942667 0.991730053 1.007104997 0.984971604 0.937896887 0.94881792 0.980482211 1.030930545 1.011095134 54778373 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 0.854635028 0.837585055 0.824993937 0.831823027 319743665 ben_bcla Lautropia mirabilis ATCC 51599 virulence NA NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Lautropia;species:Lautropia mirabilis; 0.966096185 0.897868497 0.942985819 0.93203346 0.885212097 0.931581597 0.903367733 0.87834061 0.915218505 0.958537534 0.929168804 0.918394637 0.907219969 0.910054936 0.892970217 0.89810119 0.93453964 0.921267521 371935470 fthfs Dialister succinatiphilus YIT 11850 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Dialister;species:Dialister succinatiphilus; 0.862876887 0.869524015 0.914287858 0.877290173 0.825440791 0.831902247 0.875471376 0.897375876 0.838476302 0.838834358 0.862814381 0.874314395 0.842585364 271963453 chitinase Streptosporangium roseum DSM 43021 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 0.802284633 0.999727688 0.818603067 0.799573743 0.810587785 0.843771308 0.821129291 0.795939489 0.862650344 0.832171293 0.834622422 0.814532112 0.83587595 0.847638909 0.815738649 0.836912147 15141383 poba Sinorhizobium meliloti 1021 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium meliloti; 1.339709944 1.334002368 1.284205935 1.316104698 1.290566607 1.320992973 1.274197254 1.308661586 1.309223316 1.295659049 1.260759926 1.314202389 1.279874113 1.264582634 1.264422893 1.269915312 1.31794885 1.312995472 334683923 mer Microlunatus phosphovorus NM-1 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Microlunatus;species:Microlunatus phosphovorus; 0.758662839 0.829083215 0.801060473 0.856273122 0.776325103 172072011 terc Micrococcus luteus NCTC 2665 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Micrococcus;species:Micrococcus luteus; 0.966199684 0.911524647 0.947903795 0.910903797 0.835947127 0.947827337 0.879564279 0.915457866 0.924304665 0.910384804 0.899053116 0.884219962 0.85853781 0.8985066 0.859116939 0.857317505 0.936355996 0.95091533 381168246 TIM Phaeospirillum molischianum DSM 120 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Phaeospirillum;species:Phaeospirillum molischianum; 1.182549314 1.145107924 1.161155696 1.195329229 1.151002068 1.158277924 1.144398226 1.15493542 1.170294839 1.150656261 1.157553771 1.175028643 1.172506718 1.143215179 1.148188952 1.150420314 1.192152272 1.142551889 144576216 mg_chelatase Ostreococcus lucimarinus CCE9901 Secondary metabolism Pigments Chlorophyll NA 0.916940925 0.871389916 0.903385915 0.914001249 0.894172041 0.91884596 0.936031088 0.903820319 0.910146189 0.894131145 0.868679447 0.874946833 0.848597512 0.834405609 0.796235416 0.819598187 0.874087031 0.938390086 340545045 one_ring_23diox Janibacter sp. TYM3221 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Janibacter; 0.976789986 0.969672917 0.957160322 0.969730301 0.97025708 0.97142573 0.955797978 0.94945208 0.960190076 0.973005548 0.935431677 0.983383404 0.924236677 0.911487936 0.885405479 0.942069545 0.949797711 0.94881239 343495869 urec Vibrio nigripulchritudo ATCC 27043 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio nigripulchritudo; 0.902051007 0.861284297 0.908419298 0.849187834 0.863809031 0.948728574 0.897703352 0.92174316 0.913767453 0.89495455 0.881372607 0.87557592 0.89943101 0.897613752 0.921686943 0.910434144 0.951092621 0.913877727 333606465 chitinase Paenibacillus sp. HGF7 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 0.878778529 0.900849652 0.879666514 0.904384541 0.899331583 0.903382335 0.892099241 0.89349131 0.898672927 0.872384433 0.863518921 0.89951981 0.874776658 0.900470971 0.878847451 0.917922839 0.886341923 0.872421318 186472723 pcag Burkholderia phymatum STM815 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 1.434612486 1.398762646 1.397137329 1.402944174 1.386118387 1.413686039 1.375345223 1.394136947 1.390004494 1.376778543 1.387186487 1.391726958 1.367307918 1.326429376 1.34084838 1.367998063 1.524039878 1.369307041 28270519 ppk Lactobacillus plantarum WCFS1 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus plantarum; 1.186875558 1.14307338 1.167394519 1.205791686 1.1653612 1.201986919 1.178992474 1.164789018 1.162916707 1.140481321 1.171764481 1.166991964 1.131937433 1.101646551 1.089239615 1.117006893 1.160289487 1.101408282 148518215 poba Methylobacterium sp. 4-46 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 1.28320671 1.26460277 1.242896532 1.269684893 1.22794342 1.249471242 1.230093526 1.242401848 1.263719215 1.260453179 1.212596138 1.251966753 1.195689292 1.187070485 1.174873639 1.20527311 1.278338877 1.199310972 256722474 pec_Cdeg Nectria haematococca mpVI 77-13-4 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Fusarium;species:Nectria haematococca; 1.118764109 1.07711616 1.106547202 1.080536301 1.094469619 1.109178846 1.091120362 1.086301844 1.043996074 1.074420121 1.084137678 1.079619853 1.088355191 1.051254403 1.061865806 1.030376638 1.128155991 1.104792742 164455782 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 0.835341356 0.785938371 118171850 cutinase Mycobacterium smegmatis str. MC2 155 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 1.001457866 1.000945739 0.962182674 1.022306883 0.939394466 0.954442103 0.976029104 0.939646757 0.970585883 0.971928338 0.967834699 0.953345253 0.915011323 0.897822777 0.880703608 0.885496548 0.978995303 0.984769287 395809379 terc Pseudomonas stutzeri DSM 10701 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 0.784181592 0.791022512 0.823402129 0.833684622 0.836554108 0.794374934 0.778803711 0.778370344 0.801618639 0.787057985 0.809463073 0.839869063 0.853226637 63147344 phenol_oxidase Trametes versicolor Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Trametes; 1.215549891 1.174888203 1.149084173 1.200222763 1.129292447 1.212628575 1.097495835 1.165888431 1.178171636 1.153609883 1.189703729 1.161918151 1.134136129 1.162762641 1.111604925 1.14808943 1.190634828 1.131990092 148254805 mer Bradyrhizobium sp. BTAi1 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.846888755 0.897398963 0.840029273 0.865879428 0.968952914 0.841589913 0.844221042 0.873912616 0.8414832 0.966951745 0.838871647 0.893142602 0.840754292 0.846688795 0.896743971 0.911059342 60418443 actin_Rhizaria Bolivina sp. isolate 615 Other Phylogenetic NA superkingdom:Eukaryota;class:Foraminifera;order:Rotaliida;family:Bolivinidae;genus:Bolivina; 0.972306133 0.853821166 0.818133085 0.809987766 0.858613882 0.890095937 0.863266656 0.89697667 292676219 ppk Sphingobium japonicum UT26S Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium;species:Sphingobium japonicum; 1.195894387 1.195696136 1.139728958 1.177979567 1.151774741 1.198946944 1.131286659 1.131794931 1.135722162 1.172237797 1.151876232 1.16366602 1.148309423 1.177092398 1.145916376 1.149913924 1.185350916 1.195668852 386002231 arsc Methanosaeta harundinacea 6Ac Metal Homeostasis Arsenic Detoxification superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosaetaceae;genus:Methanosaeta;species:Methanosaeta harundinacea; 0.8577576 0.867325941 0.895922379 0.912684138 0.950147171 0.927839558 0.921634681 0.869272169 0.924039659 0.925699665 0.928898175 0.888225782 0.913029106 0.866581207 0.850684459 0.874426556 0.927021872 0.915132365 84383974 amyA Janibacter sp. HTCC2649 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Janibacter; 1.130854074 1.089444324 1.095800243 1.148973785 1.127477516 1.104529122 1.114754442 1.115437527 1.099970028 1.088201297 1.084167049 1.132932281 1.066385674 1.076537024 1.083334625 1.082078976 1.100861362 1.096909504 302465316 pectinase (pectate_lyase) Streptomyces himastatinicus ATCC 53653 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces himastatinicus; 1.145475513 1.102210431 1.072467948 1.138970485 1.054886271 1.109143702 1.080330455 1.123237691 1.107663612 1.104733075 1.068070571 1.096338635 1.052194163 1.074174834 1.019464222 1.050717808 1.126484026 1.115768067 302522579 amyA Streptomyces sp. SPB78 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 1.123825474 1.131355682 1.105002925 1.15533046 1.115186671 1.107060014 1.107061901 1.115142603 1.090889782 1.07673362 1.07232738 1.125901525 1.100214191 1.087098105 1.097629749 1.097431108 1.131483411 1.090019215 259348444 dmdA Silicibacter sp. TrichCH4B Sulfur DMSP degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 0.956141633 0.921517937 0.890983833 0.983708503 0.852763441 0.943303854 0.868625624 0.905960014 0.940450742 0.897680635 0.897617676 0.898015813 0.832732826 0.86281722 0.813404284 0.852872007 0.958009323 0.958225311 114330816 CsoS2 Nitrosomonas eutropha C91 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas;species:Nitrosomonas eutropha; 1.083192037 1.108349223 1.062083818 1.124162882 1.040804167 1.055170524 1.026712112 1.057171368 1.051238862 1.044271613 1.025685333 1.069213714 1.022433315 1.004089611 1.01314916 1.060400096 1.071814277 1.066047973 312166907 GAPDH_Calvin Burkholderia rhizoxinica HKI 454 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia rhizoxinica; 0.871963386 0.88801674 0.854291639 0.921907825 0.891611049 0.854201937 0.838705968 0.852996955 0.871884322 0.853044249 0.828230998 0.884758804 0.868752171 0.876381065 0.817071752 0.875541538 0.840202257 150036128 SoxB Thiobacillus denitrificans Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus; 0.781219 0.856961301 0.798682238 0.850412916 0.850008968 0.817299992 0.836852889 0.869712704 2828271 alginase Azotobacter chroococcum Carbon Cycling Carbon degradation Alginate superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Azotobacter; 0.816399843 0.863987155 0.820869487 0.902499409 0.879114111 0.919195655 0.855655525 0.818800977 0.870891479 0.894335585 0.866680504 0.883527658 0.893093448 0.877884691 0.853920446 0.910289709 0.866028222 282854742 amyA Propionibacterium acnes J139 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium;species:Propionibacterium acnes; 0.84310341 0.799481408 0.87406306 0.874491565 0.8158451 0.809186543 0.837805435 0.894146157 0.852558225 219997666 ccmL Thioalkalivibrio sulfidophilus HL-EbGr7 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio;species:Thioalkalivibrio sulfidophilus; 0.933946809 0.973449845 0.892527101 0.980728253 0.959297001 0.960490676 0.923566191 0.972521051 0.980499762 0.944789317 0.929236291 0.958299421 0.920215984 0.894925887 0.92675019 0.860253751 0.97563355 0.973005309 222479022 amyA Halorubrum lacusprofundi ATCC 49239 Carbon Cycling Carbon degradation Starch superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halorubrum;species:Halorubrum lacusprofundi; 0.875413154 0.975033931 0.928827759 0.901302363 0.925945199 0.943428526 0.873037258 0.866920192 0.839378718 0.920842721 0.885514063 0.878639992 0.91621115 0.891076286 0.901816846 0.896271935 0.916073573 0.93362365 187477061 xylg Bordetella avium 197N Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella avium; 0.987558405 0.949061534 1.003194472 0.980348964 1.011765995 0.945061445 0.9896205 1.007151481 0.985963453 0.93826798 0.966428449 0.975335144 0.994999226 0.947234453 0.941572458 0.94546569 0.951625428 0.959010469 46307936 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.899569673 0.909674209 0.825321049 0.900562753 0.90259273 0.907740319 0.858532814 0.828974135 0.898717721 0.896774089 0.808292966 0.877287136 0.851899176 0.874864843 0.842287682 0.921652978 0.936410419 406718231 one_ring_23diox uncultured bacterium Organic Remediation Aromatics Other aromatics superkingdom:Bacteria; 1.065311003 1.072426055 1.105641029 1.079837007 0.994437553 1.068890841 1.023504187 1.044858942 1.086132603 1.068129387 1.029119973 1.05984038 0.999878009 1.059021869 1.026778143 1.00752836 1.068975221 1.066488443 344222007 rubisco Phaeospirillum fulvum Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Phaeospirillum; 1.084879224 1.065603088 1.032050612 1.032960282 1.037981631 1.043130311 1.037375396 1.062444144 1.029973912 1.032185006 1.050089751 1.029994291 1.018892011 0.983988709 0.943397066 0.990063873 1.037520875 1.050037658 379008279 tktA Sulfobacillus acidophilus DSM 10332 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XVII. Incertae Sedis;genus:Sulfobacillus;species:Sulfobacillus acidophilus; 0.788364599 0.812745896 0.798176796 0.783707544 0.814582954 0.809068477 73540698 urec Ralstonia eutropha JMP134 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 0.797373948 0.826171008 0.845643978 0.817879399 109632489 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.912093251 0.901685211 0.863201659 0.922734772 0.918166178 0.91499643 0.891738996 0.896374523 0.908328693 0.917551147 0.88652316 0.904290007 0.884784455 0.887148091 0.840888487 0.893223084 0.932899473 0.904573255 291615186 ppx Sideroxydans lithotrophicus ES-1 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Gallionellales;family:Gallionellaceae;genus:Sideroxydans;species:Sideroxydans lithotrophicus; 0.837653101 0.847230534 0.847512032 0.82871314 0.807467661 0.873980484 0.806630894 0.832564231 0.867160987 0.860461946 210159903 ppx Collinsella stercoris DSM 13279 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Collinsella;species:Collinsella stercoris; 0.795310832 0.807784284 70984924 endochitinase Aspergillus fumigatus Af293 Carbon Cycling Carbon degradation Chitin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus fumigatus; 1.230338423 1.197488512 1.204542024 1.196455268 1.182830996 1.229812403 1.164029127 1.204374523 1.198740131 1.177020283 1.19198042 1.207311794 1.163497375 1.145907748 1.158642447 1.1699656 1.215097436 1.215497217 251787920 pectinase (pectate_lyase) Dickeya zeae Ech1591 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya zeae; 0.806574428 0.817396606 0.845625605 0.822698604 0.820756982 0.802032258 0.76329255 0.859627029 405363061 alkk Chondromyces apiculatus DSM 436 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Chondromyces;species:Chondromyces apiculatus; 1.237918615 1.201568253 1.193172841 1.224545588 1.192352623 1.211435614 1.207488919 1.204492399 1.204934951 1.199085708 1.181062941 1.195188779 1.193943274 1.178678085 1.154010688 1.196288557 1.216598772 1.174402165 58268820 glx Cryptococcus neoformans var. neoformans JEC21 Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Tremellomycetes;order:Tremellales;family:Tremellaceae;genus:Filobasidiella;species:Cryptococcus neoformans; 0.789029438 0.801659671 0.836435763 0.887838567 0.828425694 0.887937455 0.848008933 0.830019362 0.862518763 0.860183094 0.791930595 0.789212477 355678227 amyA Clostridium citroniae WAL-17108 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium citroniae; 0.932223206 0.928007592 0.877606447 0.884967375 0.89338855 0.918172971 0.879645314 0.902011652 0.905268416 0.900013925 0.880633866 0.9020223 0.872323904 0.848958732 0.855351049 0.884548255 0.913885816 0.873725569 50880306 glx Botryotinia fuckeliana Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Botryotinia; 0.922557431 0.939502378 0.905874953 0.912480906 0.970808866 1.061578179 0.918147705 0.930145486 0.921312119 0.947282271 0.95648056 0.9115364 0.920941383 0.934585388 0.845104178 0.900460549 0.930221426 0.95515537 373100137 tfda Cupriavidus basilensis OR16 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus basilensis; 0.764774419 0.922100653 0.838937206 0.885326133 0.911427126 0.885251911 0.808386381 0.812987559 0.818696007 0.918348044 0.849941552 0.818379598 0.809768785 0.917226082 308213085 alkb uncultured bacterium Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria; 0.981050746 0.942571785 0.962255163 0.989654148 0.977617679 1.000722298 0.954024082 0.938750332 1.004532229 0.929374067 0.924636893 0.967800067 0.949378461 0.936997495 0.921705015 0.926528934 0.982101029 0.991896476 312168084 B_lactamase_A Burkholderia rhizoxinica HKI 454 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia rhizoxinica; 0.893188167 0.900195745 0.832235565 0.89502191 0.847707491 0.89752547 0.883450315 0.892408767 0.859092123 0.850803328 0.883262166 0.858722922 0.848692736 0.84273374 0.884968842 0.909412912 302555349 xylg Streptomyces viridochromogenes DSM 40736 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces viridochromogenes; 1.193306993 1.19974036 1.177329035 1.192027049 1.115087266 1.319190466 1.109963274 1.139354208 1.1580211 1.171568232 1.169839022 1.14754967 1.110396773 1.127796582 1.092072782 1.119725602 1.186671686 1.17705999 345009988 amyA Streptomyces violaceusniger Tu 4113 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces violaceusniger; 0.862435108 0.785527084 0.837877892 0.882366328 0.851724092 0.844902661 0.866632971 0.852863479 0.84799622 0.822715275 0.848765481 0.85491127 63256821 xyla Pseudomonas syringae pv. syringae B728a Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae; 1.016407863 1.012230664 0.999135328 1.029523164 1.002887079 1.032958956 1.020764103 1.037936972 1.032549746 1.009602845 0.951634797 0.980132243 0.910154583 0.958659439 0.902295645 1.003981306 0.961891055 0.942215249 333116788 beta_agarase Pseudomonas fulva 12-X Carbon Cycling Carbon degradation Agar superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fulva; 1.07779792 1.074227171 1.003986504 1.037347497 1.027729356 1.050276169 1.005672348 1.006662972 1.035306629 1.032785283 1.041008037 1.022622017 1.01650347 1.060910654 1.018419334 1.019501383 1.041396975 1.052163363 422314497 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.082548731 1.082969631 1.097290237 1.060390699 1.064578896 1.066803422 1.048911663 1.04677802 1.065259421 1.088706813 1.050273369 1.028466723 1.006165212 1.026297726 1.011836435 1.033569037 1.092581619 1.10151332 354614973 linb Saccharomonospora paurometabolica YIM 90007 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora paurometabolica; 0.96834856 0.907055587 0.94514835 0.952843166 0.938266397 0.943346869 0.891007457 0.947745162 0.933943615 0.944403371 0.965533068 0.924119741 0.954004062 0.857594579 0.934301385 0.980892383 0.936007529 313104764 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.09077425 1.090548766 1.07769936 1.067724865 1.048440986 1.11010918 1.067876124 1.086494716 1.094070395 1.126707887 1.066627219 1.082399861 1.012789604 1.087116864 1.066877497 1.060421498 1.092839009 1.138307108 217502754 FBP_aldolase Methylocella silvestris BL2 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Methylocella;species:Methylocella silvestris; 1.029622795 0.978752353 0.989888043 1.031277916 0.985391707 1.033506619 0.984467144 1.009419516 0.998469678 0.967740094 0.978584855 1.025048964 0.990974821 0.960687571 0.945661736 1.004425964 0.984162858 0.965719249 380302130 amyA Brachybacterium squillarum M-6-3 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dermabacteraceae;genus:Brachybacterium;species:Brachybacterium squillarum; 1.29503874 1.275844103 1.26742582 1.292652121 1.249279669 1.312584418 1.255700664 1.269019137 1.26806934 1.274669986 1.273127783 1.289707879 1.245684187 1.23566097 1.216510721 1.255232328 1.289341515 1.270057188 338756403 TIM Roseobacter litoralis Och 149 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter litoralis; 1.101090228 1.065912301 1.024924129 1.09943514 1.074382775 1.029401141 1.029809919 1.11226784 1.125906797 1.053662335 1.058971308 1.124765965 1.01517296 1.030492475 0.996990519 1.028572552 1.062433966 1.037922626 71556174 nitro Pseudomonas syringae pv. phaseolicola 1448A Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas savastanoi; 1.284324885 1.235923198 1.249610853 1.282667048 1.25438165 1.246986209 1.214291566 1.237201505 1.240277515 1.23880332 1.222949067 1.266350896 1.248366935 1.185789564 1.220931391 1.225083681 1.293577915 1.222310587 126437893 linb Mycobacterium sp. JLS Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 0.882293179 1.065869062 0.876414798 0.807843503 0.832380224 0.835040549 0.826403517 0.822468356 0.808880392 0.843502182 0.851834855 409407481 pcpe Herbaspirillum sp. GW103 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herbaspirillum; 1.160914135 1.131460561 1.136386329 1.162082395 1.142048153 1.16569641 1.10452996 1.120386202 1.153080844 1.09152864 1.109246961 1.141388931 1.124420545 1.077440334 1.130835307 1.113616246 1.182587586 1.145574112 118469608 catechol_b Mycobacterium smegmatis str. MC2 155 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 0.826663299 0.880549593 0.896323888 0.913224495 0.893647798 0.895518386 0.900664652 0.882090454 0.848728642 0.809918279 0.892376536 0.794947851 0.814445684 0.876478802 0.884541434 365337848 aln Bradyrhizobium sp. STM 3809 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.866096763 0.839319377 0.858300093 0.909244744 0.866557637 0.869007418 0.821280574 0.821703002 0.901199525 0.803608751 0.85288828 0.827189672 0.888049564 0.876417535 60476230 dsrB uncultured bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.80153832 0.804114922 18542427 protease_serine_fungi Tolypocladium inflatum Carbon Cycling Carbon degradation protein superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Clavicipitaceae;genus:Tolypocladium; 1.043684127 1.007692107 0.997850217 1.059105501 0.98833628 1.003452091 0.993596291 1.026954483 1.037660379 1.025128847 0.96356354 1.025911445 0.997095478 0.996658577 0.995574529 1.002417657 1.079546341 1.02869813 253573651 endochitinase Paenibacillus sp. oral taxon 786 str. D14 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus sp. oral taxon 786; 0.845947331 0.870050039 0.909517979 0.83460669 0.884975868 0.878508019 0.923516488 0.857142714 0.902295456 0.848410671 0.868834321 0.883004697 0.877392435 0.888435134 0.849881863 0.896614084 148256848 amyA Bradyrhizobium sp. BTAi1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.962323625 0.899549381 0.957797335 0.919871836 0.938213124 0.933061052 0.918070313 0.944654382 0.923816786 0.955293735 0.930336795 0.947574724 0.889008578 0.913316812 0.877158086 0.943803927 0.944917435 0.967819934 380773685 amyA Microbacterium laevaniformans OR221 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Microbacterium;species:Microbacterium laevaniformans; 1.078540296 1.091632148 1.062133082 1.088296976 1.078913776 1.093729605 1.067599263 1.06940307 1.085003034 1.059284887 1.04965056 1.080887014 1.06622576 1.056686146 1.045836882 1.082961422 1.124547404 1.05356974 283812458 chitinase Kribbella flavida DSM 17836 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Kribbella;species:Kribbella flavida; 0.896283223 0.880592706 0.895381704 0.90110207 0.940500054 1.007118615 0.942974352 0.837567579 0.892441206 0.999114342 0.950266203 0.875427952 0.938508038 0.918583469 0.868823043 0.884719282 0.95675728 0.947844803 152983577 poba Pseudomonas aeruginosa PA7 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 1.15478345 1.156007281 1.136974071 1.123270898 1.114221279 1.164715075 1.120065231 1.112528997 1.11373714 1.150588684 1.134512676 1.124462232 1.095709663 1.091151972 1.083998629 1.101595991 1.147167232 1.142364736 260221692 alkj Curvibacter putative symbiont of Hydra magnipapillata Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Curvibacter; 0.934361731 1.019224405 0.956111143 0.985061993 0.990358633 1.001704124 0.995609718 0.961950348 0.96262193 0.979229266 0.970778196 0.929489099 0.950732372 0.942129056 0.875007031 0.946307351 0.974920496 0.964169177 327194648 acetylglucosaminidase Rhizobium etli CNPAF512 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 1.191803026 1.069434768 1.062350424 1.132560492 1.051707621 1.128602596 1.062967766 1.053410702 1.051874217 1.087211192 1.074772848 1.073172038 1.031225653 1.074222427 1.012466442 1.062381201 1.080185903 1.067126393 254514243 vdh gamma proteobacterium NOR5-3 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 0.860586278 0.837457602 0.851320605 0.859418964 0.813644377 0.832208653 0.840389158 0.811669457 0.882767273 0.82520374 0.81499351 0.83304841 0.84555098 302867323 amyA Micromonospora aurantiaca ATCC 27029 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Micromonospora;species:Micromonospora aurantiaca; 1.170006853 1.154106698 1.160439765 1.133465341 1.126216645 1.150024012 1.1129559 1.117530578 1.131328944 1.132141741 1.139791355 1.139249484 1.142826513 1.16150495 1.114767647 1.165239888 1.16158719 1.146810356 92109254 FBPase Nitrobacter hamburgensis X14 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter hamburgensis; 1.010120782 0.977154783 0.998802181 1.034864365 1.053622661 1.028075753 1.019683053 0.967171817 1.035747056 1.060715421 1.003488362 1.005447426 0.988199147 1.016139372 0.926100214 0.96603268 0.980931536 0.998378547 283362016 exoglucanase Aspergillus oryzae Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 0.90684619 0.924533536 0.925039903 0.960536757 0.898458965 0.932896767 0.876486511 0.909980832 0.821962903 0.89398035 0.85162008 0.903019656 0.905573519 0.9078703 0.94267791 61808012 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.944150038 0.897688706 0.916111431 0.917012639 0.915340094 0.928948469 0.912175002 0.90049067 0.939687766 0.912581412 0.9694779 0.934194602 0.862474354 0.845767116 0.881907005 0.93390925 0.926621169 422314511 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.104092307 1.066049296 1.095852097 1.105269029 1.091051699 1.105514716 1.071927528 1.084425466 1.076189999 1.068299906 1.07715244 1.08734015 1.096036536 1.035205212 1.049394213 1.06069497 1.106020732 1.081480969 86609253 ccmL Synechococcus sp. JA-2-3B'a(2-13) Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 1.374847106 1.350209209 1.335210345 1.340604622 1.298863942 1.355402839 1.302958049 1.326601324 1.322578927 1.312905431 1.321530063 1.318480652 1.310608359 1.29950218 1.303715334 1.307551844 1.369540616 1.342611655 46913619 terc Photobacterium profundum SS9 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium profundum; 0.813552809 0.829883855 0.886352261 0.843889324 0.819006774 0.85215261 0.824369192 0.800425454 0.810974837 0.848990964 337748674 gdh Paenibacillus mucilaginosus KNP414 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 0.948847717 0.949820869 0.932166235 0.963150624 0.935808033 0.938135336 0.922173398 0.963906116 0.9607623 0.918019866 0.96494336 0.940251971 0.911429293 0.943343283 0.878923012 0.904590163 0.962484385 0.980652106 332977076 trza Desmospora sp. 8437 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Thermoactinomycetaceae;genus:Desmospora; 0.898682171 0.914603967 0.903307664 0.85742607 0.817569047 0.901003615 0.825334879 0.873535976 0.832204454 0.852089364 0.850344611 0.858091414 0.844599339 0.877369068 0.839855263 0.879055699 0.830192543 182413109 CsoS1_CcmK Opitutus terrae PB90-1 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 0.877824104 0.950583809 0.894485047 0.897717026 0.883976699 0.889140997 0.88228726 0.871177979 0.910010425 0.844716563 0.862735022 0.845855329 0.839514635 0.850814954 0.869937548 0.887129594 0.912206184 94495020 xylanase Sphingomonas sp. SKA58 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 1.167509927 1.15108617 1.190913126 1.173325318 1.160682555 1.181995909 1.155596847 1.174790877 1.157074074 1.146136735 1.139731244 1.141368254 1.147230628 1.111672763 1.10643831 1.120444336 1.181155373 1.130085599 380302727 amyA Brachybacterium squillarum M-6-3 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dermabacteraceae;genus:Brachybacterium;species:Brachybacterium squillarum; 1.142073633 1.141506384 1.1399271 1.137598035 1.152948054 1.159830757 1.141022768 1.150922305 1.167957429 1.1634611 1.131093071 1.176675463 1.106831049 1.126620582 1.129558052 1.136727955 1.116317204 1.158227719 115401562 endopolygalacturonase_fungi Aspergillus terreus NIH2624 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 1.30151941 1.266838563 1.25508499 1.246314185 1.269098458 1.285596237 1.268284497 1.267569653 1.245545043 1.264233894 1.265118464 1.254211397 1.230077039 1.247449996 1.227669811 1.245986885 1.280085424 1.276779852 199594051 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.201224406 1.176569968 1.213121988 1.197697443 1.177767855 1.191041508 1.130284136 1.197323635 1.169537945 1.174299451 1.173119137 1.205189518 1.144160228 1.15451257 1.120593759 1.150817751 1.173695521 1.176961005 344210020 urec Haloarcula hispanica ATCC 33960 Nitrogen Ammonification NA superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloarcula;species:Haloarcula hispanica; 0.771933047 0.815627279 0.776413748 0.85742317 27802969 hcab Ralstonia sp. JS705 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 1.197082725 1.159523512 1.196594699 1.206562294 1.182216161 1.210750014 1.181905339 1.202692207 1.182327442 1.154744278 1.166832948 1.181271372 1.175918618 1.146009393 1.167917268 1.157806828 1.218129322 1.141317867 113941017 urec Herpetosiphon aurantiacus ATCC 23779 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Herpetosiphonales;family:Herpetosiphonaceae;genus:Herpetosiphon;species:Herpetosiphon aurantiacus; 0.887738822 0.905305434 0.912141063 0.92996085 0.923872498 0.839823729 0.919336155 0.909211405 0.908763189 0.885854201 0.903906834 0.918820988 1.083117789 0.884637905 0.896515462 0.854479951 0.93025415 0.909780947 260776800 dehh109 Vibrio coralliilyticus ATCC BAA-450 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio coralliilyticus; 0.809685871 0.87910188 0.851814244 0.863246632 0.84249397 0.818224031 0.820904044 0.826652145 0.883440257 0.868553977 0.821267345 0.816130108 0.766601206 0.814297039 0.855280307 0.881947731 77383191 catb Pseudomonas fluorescens Pf0-1 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 1.146744165 1.085140822 1.125114997 1.122633256 1.136406033 1.133506285 1.113610846 1.089314613 1.103354867 1.092069792 1.071287093 1.086698257 1.07151002 1.045132825 1.074469243 1.065448328 1.138237159 1.093725575 365425317 soxY Bradyrhizobium sp. STM 3843 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 1.093452207 1.037650341 1.061046842 1.087810499 1.043422662 1.042535761 1.037705528 1.061605284 1.128180367 1.069289654 1.054596216 1.067102056 1.016549661 1.000746501 0.978904356 1.041623771 1.098701901 1.080641173 383645576 sdsa Sphingomonas elodea ATCC 31461 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas elodea; 0.99000876 0.986733665 0.931962943 0.986160765 0.908113786 0.993534242 0.891715912 0.930508891 0.969486309 0.967671762 0.948675819 0.959411442 0.922647137 0.946138894 0.836045575 0.926842942 0.981746265 0.996869995 296257001 exaa(moxf) Methylosinus trichosporium OB3b Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylocystaceae;genus:Methylosinus;species:Methylosinus trichosporium; 0.79852717 0.85577204 0.832721366 0.814193208 0.879043548 0.837757964 0.793850731 0.876744873 229318591 pcpe Rhodococcus erythropolis SK121 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 0.85280253 0.861455994 0.840378743 0.857062613 0.813958117 0.876418355 0.845661782 0.889994487 0.863925353 0.846000776 0.887818016 0.813612495 0.880249662 0.909071322 312130581 alginase Leadbetterella byssophila DSM 17132 Carbon Cycling Carbon degradation Alginate superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Leadbetterella;species:Leadbetterella byssophila; 0.800008573 0.783161081 396928528 linc Rhodococcus sp. JVH1 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 0.828599439 0.890542441 0.806860152 0.844945657 0.851792435 0.895585484 0.852995017 0.769397578 0.883752418 0.84975376 0.888153785 0.83005741 0.815523023 0.848049749 0.866857101 0.89841267 209486732 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.064964878 1.065270228 1.052464859 1.047562158 1.08045557 1.088247088 1.056643812 1.086894482 1.069206435 1.035761817 1.040098506 1.062127723 1.02567924 1.035628141 0.981777553 1.039671337 1.069745852 1.075685486 159178975 tktA alpha proteobacterium BAL199 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 1.193271287 1.153009582 1.153797995 1.166169479 1.169110005 1.162063637 1.180466241 1.161894193 1.183325411 1.182819217 1.204008419 1.202529304 1.132458591 1.111693624 1.136328525 1.13377374 1.183360736 1.167507949 358637919 vdh Azoarcus sp. KH32C Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 0.986777443 0.991506696 0.966939163 0.988052273 0.97100519 0.970914453 0.950418648 0.917945936 0.93018323 0.948138736 0.910623903 0.918454048 0.946604458 0.912068279 0.852763607 0.889635038 0.961150517 1.000274109 339731114 cysJ Zobellia galactanivorans Sulfur Reduction NA superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Zobellia; 0.782506603 0.814263277 0.768920516 0.8215375 0.80832512 0.839804018 0.826675683 0.810288286 0.798361595 0.771968664 15026850 tfdb Burkholderia cepacia Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 0.903180762 0.867425388 0.925111667 0.893083353 0.8416393 0.902003257 0.830746221 0.905776368 0.886615583 0.918718467 0.873290858 0.872135504 0.808570687 0.975837119 0.828685993 0.887420122 0.945958564 194566416 one_ring_12diox Burkholderia dolosa AUO158 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia dolosa; 1.274343969 1.253700481 1.243947913 1.218578677 1.228094873 1.279439047 1.232462722 1.218133652 1.232785571 1.235699246 1.264783479 1.221888147 1.243104164 1.187899999 1.192068108 1.219074691 1.281029268 1.243169248 118172952 bphd Mycobacterium smegmatis str. MC2 155 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 0.809933685 0.812781167 0.868697469 0.825264486 0.811481692 0.807130946 0.85564151 0.822270525 0.811429931 0.795131526 126470044 bphc Rhodococcus rhodochrous Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 0.848166098 0.882592329 0.889094179 0.898943287 0.877146364 0.883585171 0.864830743 0.814759038 0.851937354 0.897952811 0.87860639 0.921517874 0.858409343 0.827451855 0.798898906 0.855413821 0.8278697 0.825506442 162568559 aoxb uncultured bacterium Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 0.944745339 0.946832629 0.93352377 0.941442754 0.898986851 0.946988483 0.864595533 0.936523491 0.976706048 0.933468757 0.884972077 0.907509321 0.855599791 0.912787731 0.831826274 0.910432613 0.947041723 0.951978836 56680167 linc Silicibacter pomeroyi DSS-3 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 1.055717384 1.019835855 1.020066961 1.038996902 1.078866132 1.080809519 1.056372045 1.034147647 1.062433574 1.068054656 1.049856809 1.034376062 1.043687591 1.016773526 0.980914357 1.010023188 1.067087928 1.052403779 145217397 chnb Mycobacterium gilvum PYR-GCK Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 0.932112687 0.96584174 0.862528848 0.943276298 0.966729342 0.966345278 0.978572436 0.930694793 0.937060099 0.975809829 0.911532143 0.905437952 0.948154128 0.933543338 0.873231366 0.941890688 0.960683649 0.947762599 375009048 RgaE Geobacillus thermoleovorans CCB_US3_UF5 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus;species:Geobacillus thermoleovorans; 1.265758099 1.280812172 1.233188795 1.276145727 1.277765788 1.272000658 1.250844579 1.246581121 1.287827545 1.257962466 1.255492233 1.290742392 1.262164654 1.211092627 1.231327812 1.236662897 1.241304029 1.21859061 209966545 alkk Rhodospirillum centenum SW Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum centenum; 0.77529423 0.830112439 120594808 ben_bcla Polaromonas naphthalenivorans CJ2 virulence NA NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 0.815366957 0.809760841 0.807015126 0.796084997 0.833446161 0.799254534 0.816115753 0.815353484 0.812698065 0.860574776 302465463 ppx Streptomyces himastatinicus ATCC 53653 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces himastatinicus; 1.079921902 1.052160399 1.078920485 1.086291309 1.079609511 1.091528515 1.031961436 1.021323652 1.056760504 1.028516053 1.019938616 1.041188744 1.043708002 0.958963158 1.013659935 1.029945075 1.089798815 1.010571584 333737512 nifh Treponema azotonutricium ZAS-9 Nitrogen Nitrogen fixation NA superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema azotonutricium; 1.039695451 1.01277531 0.991941491 1.063300104 1.000843103 0.993177778 1.017654476 1.023596465 1.074258266 1.016248341 0.996459764 1.05053836 1.014954821 0.921766611 0.955324899 0.939321116 1.056835474 0.992456527 330508955 gdh Methanosaeta concilii GP6 Nitrogen Ammonification NA superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosaetaceae;genus:Methanosaeta;species:Methanosaeta concilii; 1.219466596 1.175054726 1.183037237 1.215758951 1.15471112 1.172341251 1.147622436 1.199165833 1.19761268 1.189266294 1.163653395 1.189254524 1.140059192 1.150268257 1.103052009 1.129836472 1.183500632 1.153768503 145242042 bph Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 0.935703502 0.930164524 0.91416065 0.963155821 0.846001119 0.951003584 0.859830773 0.945315748 0.942555552 0.954073575 0.887153114 0.919574131 0.842596083 0.911872135 0.898708051 0.959908186 0.986027348 38479650 rubisco Magnetospirillum magnetotacticum Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum; 0.942974073 0.988173157 0.916369812 0.971415901 0.90939333 0.92587618 0.940182733 0.999931693 0.958761954 0.955790983 0.894344094 0.976831419 0.918477533 0.96567326 0.883770828 0.946626313 0.945786627 0.996163096 158440071 amyA Clostridium bolteae ATCC BAA-613 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium bolteae; 1.040078462 0.996403337 0.994713753 1.016060288 1.040961252 1.019381899 1.030539496 1.01869983 1.020391748 0.999554006 1.012319989 1.027436889 0.981871651 0.976914256 0.962777566 0.980226478 0.995312782 1.01664021 332377148 fthfs uncultured bacterium Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria; 0.797396376 0.813507617 0.806021483 0.852789184 0.829412813 0.795085014 0.84956711 0.877222116 0.838674025 0.808779554 0.813318031 0.858006196 149908380 nitrilase Moritella sp. PE36 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Moritellaceae;genus:Moritella; 0.976558846 0.854189752 0.999910034 0.872440651 0.963183445 0.899758613 0.887939547 0.92906652 0.883035651 0.874433516 0.925034683 0.950273215 0.921753276 0.822490215 0.971729496 0.877375796 0.840258282 334104057 proO Sphingobium chlorophenolicum L-1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium;species:Sphingobium chlorophenolicum; 0.819897971 0.868607906 0.827197249 0.872144417 190687878 tktA Cellvibrio japonicus Ueda107 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio;species:Cellvibrio japonicus; 1.025636354 1.004650978 1.027298155 1.045190625 0.977138561 0.97348778 0.956001795 1.016870991 1.013663312 0.995567133 0.956119476 0.983510616 0.955034641 0.948220969 0.886452296 0.953531342 0.991311177 1.003647621 256670941 xyla Streptomyces sp. AA4 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 1.078272065 1.094078767 1.052762056 1.069118694 1.073476115 1.091031332 1.024419111 1.045921401 1.063910541 1.044803908 1.079890559 1.060348861 1.048870787 1.044375065 1.051526108 1.041215712 1.091896014 1.115180544 157804798 aps_apra sulfur-oxidizing bacterium str. manganese crust Sulfur adenylylsulfate reductase NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 0.87234934 0.854722473 0.878794966 0.924182019 0.813736255 0.812623867 0.81264528 0.811670266 0.871311652 0.859522552 0.826298947 0.835009239 0.82624139 0.833709264 0.912924495 0.892685334 351594142 pgk Pelagibacterium halotolerans B2 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Pelagibacterium;species:Pelagibacterium halotolerans; 1.044706923 1.031767384 1.023852552 1.007554488 1.038650545 1.035920735 1.053542188 1.011338896 1.027886706 1.040114547 1.063980078 1.020889336 0.956622988 0.975681903 0.917910168 0.996134041 1.025362372 1.037674887 324970421 nitro Planctomyces brasiliensis DSM 5305 Organic Remediation Others NA superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Planctomyces;species:Planctomyces brasiliensis; 1.013158646 1.018210168 1.013422948 1.050570348 1.044216654 0.99251939 0.995892834 0.999624145 0.995793011 1.016152889 1.006872819 1.01038596 0.942755979 0.951067475 0.973582169 0.962618316 1.029506498 1.006270543 150031334 acetylglucosaminidase Sinorhizobium medicae WSM419 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 0.967579134 0.962109881 0.944018607 0.97448575 0.963641386 0.967092729 0.948976413 0.993215137 0.974148373 0.963327258 0.936102739 0.96096261 0.946458475 0.948286886 0.912131509 0.953018531 0.935884341 0.970480112 296020483 xylanase Cellulomonas flavigena DSM 20109 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas;species:Cellulomonas flavigena; 1.126568964 1.111417502 1.129749964 1.15072542 1.135849637 1.141044725 1.130710755 1.133939964 1.127583677 1.108996346 1.124713452 1.127964125 1.1077445 1.079598933 1.066263121 1.130489983 1.134241336 1.097279062 299766922 glucoamylase uncultured fungus Carbon Cycling Carbon degradation Starch superkingdom:Eukaryota;kingdom:Fungi; 0.899765778 0.892804424 0.969302668 0.911035229 0.856822281 0.783864545 0.824093901 0.883904602 0.86520277 0.858284571 0.883722584 0.781800462 0.847900865 0.923266742 0.826776672 219848979 amyA Chloroflexus aggregans DSM 9485 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aggregans; 0.79666711 0.839986831 0.82260219 0.79289974 0.784739059 0.826062315 153962580 sqr uncultured bacterium Sulfur Sulfide Oxidation NA superkingdom:Bacteria; 1.77875741 1.714912549 1.726330106 1.710032401 1.703071186 1.734533941 1.719212505 1.698232854 1.701037595 1.68262462 1.729689874 1.717835606 1.674434898 1.666327294 1.710387343 1.699291005 1.726770465 1.672552394 229851079 xyla Streptosporangium roseum DSM 43021 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 1.08577347 1.077061659 1.07205825 1.025748179 1.087256883 1.085515858 1.004512945 1.053406944 1.03855967 1.02762389 1.041348327 1.021109585 1.047517717 1.02300018 1.022356804 1.022972557 1.093409619 1.108087816 149128053 acetylglucosaminidase Bacteroides caccae ATCC 43185 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides caccae; 0.834721219 0.883055675 0.885543913 0.899821733 0.917834478 0.828990394 0.910007257 0.884731346 0.914412625 0.943317177 0.913372558 0.92406252 0.873215224 0.840583259 0.832254249 0.864876806 0.936047795 0.917428913 50982456 pmoa uncultured bacterium Carbon Cycling Methane Methane oxidation superkingdom:Bacteria; 0.894413811 0.913704725 0.871688425 0.883299409 0.819553479 0.887123963 0.883275261 0.897115615 0.827809774 0.8266057 0.894581654 0.952888064 224519944 rgl Bacteroides cellulosilyticus DSM 14838 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides cellulosilyticus; 1.308561085 1.312919883 1.282996642 1.264209477 1.288980177 1.324734554 1.285646601 1.272846691 1.277420996 1.319149533 1.289368087 1.280531387 1.271929862 1.311514617 1.293472745 1.283591173 1.288394428 1.300861305 328921162 GAPDH_Calvin gamma proteobacterium IMCC3088 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 0.901437415 0.951807518 0.980581103 0.932323371 1.07126072 0.881323505 1.007653668 0.856486833 0.948197626 0.972829385 0.937286311 0.960259663 0.937620577 0.932919454 0.925730321 0.936830151 0.878189401 0.909550187 262085241 amyA Gordonia bronchialis DSM 43247 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia bronchialis; 0.863870658 0.906124778 0.837706374 0.906058362 0.874906312 0.864169394 0.910024882 0.867861785 0.898489136 0.879513239 0.872611386 0.893394626 0.87215128 0.844962344 0.883924195 0.872268648 0.857136428 0.89102139 188572643 mcra uncultured archaeon Carbon Cycling Methane Methanogenesis superkingdom:Archaea; 0.850624968 0.82002766 0.879399459 298710460 mg_chelatase Ectocarpus siliculosus Secondary metabolism Pigments Chlorophyll superkingdom:Eukaryota;phylum:Phaeophyceae;order:Ectocarpales;family:Ectocarpaceae;genus:Ectocarpus; 0.838670864 0.825174011 0.827158754 0.832047545 0.833858191 0.818734106 0.820850039 0.819910264 0.825247249 304281792 ccmM Arthrospira platensis AGB-AP02 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Arthrospira;species:Arthrospira platensis; 0.896036824 0.847209231 0.936424091 0.810809285 0.822670944 0.859757689 0.848703445 0.890467777 0.822516527 0.78989425 0.838442267 289163710 bphF1 Legionella longbeachae NSW150 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Legionellales;family:Legionellaceae;genus:Legionella;species:Legionella longbeachae; 0.996307081 0.811023761 0.954773936 0.781905754 170738027 amie Burkholderia cenocepacia MC0-3 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cenocepacia; 1.099146478 1.054315624 1.070830302 1.052118386 1.001101737 1.047934201 0.993630114 1.011700583 1.089056947 1.035350855 1.054289865 1.067879196 1.024364355 1.013517232 0.987228928 1.018505904 1.051008978 1.0605607 21221525 poba Streptomyces coelicolor A3(2) Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 1.202622691 1.214574095 1.199965441 1.179249575 1.215697898 1.240521494 1.186570334 1.163347345 1.16112501 1.211761815 1.227017633 1.194317191 1.206519422 1.195263256 1.184509655 1.186671599 1.21351303 1.190966365 238926131 nrfa Selenomonas flueggei ATCC 43531 Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas flueggei; 0.804632576 0.867345603 0.851512863 0.791197925 0.811702439 0.809272776 0.822004131 0.84302802 392727337 mdlc Methylobacterium sp. GXF4 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 0.873385333 0.96236385 0.981516032 0.914261276 0.942040733 0.931244886 0.87184571 0.862995573 0.871454232 0.924103564 0.841801423 0.892219983 0.925834688 0.840565204 0.886530111 0.924301057 0.908668567 0.93803242 209502506 catechol Burkholderia sp. H160 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 1.104372652 1.039252464 1.070382968 1.08953033 1.067263415 1.114651168 1.078690427 1.086817076 1.085657381 1.088318993 1.067896754 1.099353298 1.049908259 1.100027638 1.052486581 1.050689264 1.11213525 1.072189876 226935208 tehb Burkholderia sp. JS667 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 1.235914842 1.247555993 1.228522093 1.218745458 1.217917899 1.238490484 1.204442553 1.184045544 1.207632379 1.228273711 1.236305706 1.23395566 1.176271982 1.189254881 1.159929367 1.214323343 1.224980606 1.211299623 348169682 ppx Saccharopolyspora spinosa NRRL 18395 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora spinosa; 0.85797859 0.815306375 0.865495051 0.797703845 0.818955631 0.846185693 0.88017311 0.85547339 160429441 CsoS1_CcmK Clostridium phytofermentans ISDg Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium phytofermentans; 0.863683682 0.815345083 0.919732888 0.890494531 0.880755798 0.863623983 0.862682605 0.910987274 0.895305501 0.887336743 0.904752146 0.916256403 0.863792412 0.904991298 0.873061708 0.884214233 0.88384767 0.90430911 38678117 bphb Rhodococcus sp. RHA1 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 0.87000758 0.814059095 0.825321202 0.822921281 0.892456837 0.813139459 182892412 urec Haptophyceae sp. CCMP1249 Nitrogen Ammonification NA superkingdom:Eukaryota; 1.050066631 1.044956684 0.988929538 0.994293787 0.968575249 1.088159624 0.968062533 0.953500819 1.008715794 1.047133328 1.035764099 0.979383988 0.988462788 0.995515545 1.058659627 0.988345805 1.029433762 1.015749049 325471063 pula Lachnospiraceae bacterium 4_1_37FAA Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae; 1.163197709 1.091016639 1.05372593 1.102870688 1.084183218 1.080734207 1.051919882 1.100633509 1.086358165 1.048746839 1.066305851 1.110955404 1.084560654 1.026959654 1.018600157 1.044533184 1.131484634 1.091266329 301798990 GAPDH_Calvin gamma proteobacterium HdN1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 1.039144676 0.995959141 1.013773978 0.969843884 1.050253172 1.024246014 1.030152021 0.990941964 0.994975198 1.020581005 1.025945237 1.034938448 1.008384336 0.994330508 0.947002524 0.982399091 1.004616201 1.017453492 146193124 ppk Bradyrhizobium sp. ORS 278 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 1.117692097 1.067803664 1.065584234 1.100406661 1.020718586 1.066680501 1.066619914 1.089851198 1.090997583 1.071750432 1.047384912 1.078225615 1.04802619 1.044903468 1.03786127 1.091665201 1.084260743 1.080104563 119956473 chnb Mycobacterium vanbaalenii PYR-1 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 0.896210058 0.995991001 0.896130798 0.8878431 0.924270533 0.956834628 0.857325592 0.862248337 0.894375058 0.961435434 0.900010724 0.961432548 0.947609762 0.917588643 0.865653269 0.951063967 0.89697433 0.964105114 338208226 exaa(moxf) Acidiphilium sp. PM Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acidiphilium; 0.948264342 0.906359387 0.925910469 0.923096159 0.921694499 0.946715689 0.972659076 0.933563109 0.953735994 0.950297652 0.915462399 0.925698365 0.914639137 0.904219464 0.887401731 0.911506966 0.9072587 0.979406277 188592329 bphc Cupriavidus taiwanensis Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus; 1.250266531 1.240737043 1.273901623 1.263011563 1.212936797 1.253998783 1.214747001 1.224044977 1.221457408 1.229870407 1.210958738 1.24337363 1.193784159 1.197840353 1.198287059 1.211634502 1.239806144 1.222323064 158332627 amyA Azorhizobium caulinodans ORS 571 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Azorhizobium;species:Azorhizobium caulinodans; 0.892098873 0.894128625 0.928053034 0.899487026 0.853961649 0.878923725 0.85131222 0.923509546 0.90015725 0.87125981 0.913923221 0.967451839 0.853372699 0.818314834 0.823053419 0.838459924 0.913806333 0.890617495 209401818 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.834184628 0.829719969 227069527 narb uncultured archaeon Nitrogen Assimilatory N reduction NA superkingdom:Archaea; 0.852606861 0.955310544 0.895058792 0.882950351 0.913304494 0.93278041 0.867111209 0.890523309 0.872630754 0.965213556 0.882311653 0.915273461 0.92347658 0.8912854 0.863209657 0.93787061 0.955759703 0.930324724 40788416 xylanase Scytalidium thermophilum Carbon Cycling Carbon degradation Hemicellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;genus:Scytalidium; 0.805236941 0.788454238 0.841359528 0.815976041 82799299 CsoSCA uncultured marine type-A Synechococcus 5B2 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 0.9935056 1.008015926 0.92207853 1.033994643 0.933087425 1.038625612 0.927289972 1.02171102 1.008266112 0.978800799 0.990152859 0.971915633 0.918380945 0.955146619 0.917569225 0.975855711 1.040675041 1.026032232 256831611 arsc Jonesia denitrificans DSM 20603 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Jonesiaceae;genus:Jonesia;species:Jonesia denitrificans; 0.846625177 0.890618476 0.848965117 1.105474473 0.887526761 0.868618294 0.86063512 0.868893509 0.884247062 0.868495563 0.84233113 0.864530687 0.811271884 0.802327467 239816485 TIM Variovorax paradoxus S110 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 1.165151835 1.119293768 1.109381622 1.170743838 1.089457359 1.106902588 1.104719115 1.106727254 1.120814989 1.109615729 1.118035248 1.131596536 1.069911588 1.085308598 1.022176253 1.095880332 1.148008226 1.107410427 124515171 amyA Leptospirillum rubarum Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Nitrospirae;class:Nitrospira;order:Nitrospirales;family:Nitrospiraceae;genus:Leptospirillum; 1.239811929 1.199213582 1.18636822 1.239658413 1.191720504 1.221537295 1.195934117 1.219764942 1.198420866 1.181516291 1.170826965 1.198972861 1.178061803 1.154889468 1.135709099 1.17222409 1.245335657 1.174852714 294476997 tktA Rhodobacter capsulatus SB 1003 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter capsulatus; 0.868910736 0.916353366 0.873912651 0.85200243 0.858753113 0.868580093 0.819148555 0.819400153 0.838283733 0.893763654 0.855203011 0.934007338 162952281 mer Renibacterium salmoninarum ATCC 33209 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Renibacterium;species:Renibacterium salmoninarum; 1.037901106 1.001654333 0.989704552 0.990134926 0.989075687 0.995283022 1.010450101 0.998265493 1.031369526 1.02375124 1.018609879 1.009530972 0.976355517 0.942905364 0.919839581 0.952760916 1.041902051 1.037829467 1771521 napa Rhodobacter capsulatus Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter; 0.944869688 0.949058488 0.938614357 0.924645948 0.947172939 0.93170744 0.915439711 0.901252864 0.928719879 0.9207676 0.929465794 0.930268027 0.907179856 0.941981903 0.902492275 0.936205731 0.935568346 0.956616544 4633556 nosz uncultured bacterium ProC Nitrogen Denitrification NA superkingdom:Bacteria; 0.785700297 0.803314776 0.772835541 0.797457637 0.791898636 0.819451571 352081390 Sir Rhodanobacter sp. 2APBS1 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Rhodanobacter; 0.927452476 0.921448993 0.902082718 0.905755331 0.886874965 0.905257304 0.862185398 0.909793699 0.877157806 0.837422272 0.856667916 0.918879017 0.906309608 0.878548192 0.867014526 0.893353011 0.928767805 0.890686796 116668784 arsc Arthrobacter sp. FB24 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 0.890939965 0.944078578 0.918500706 0.908682632 0.914484576 0.908989821 0.951248903 0.868200701 0.897718417 0.929865381 0.988107977 0.925418797 0.913601838 0.905648355 0.819129874 0.901610429 0.875496059 0.898071761 153962710 sqr uncultured bacterium Sulfur Sulfide Oxidation NA superkingdom:Bacteria; 0.936297608 1.003036708 0.924893736 0.892761656 0.957690875 0.957232296 0.906550184 0.92310658 0.896378969 0.992837881 0.906005574 0.938263207 0.924642532 0.895398485 0.886598183 0.971541379 0.904012394 0.984899736 264680192 mdlc Comamonas testosteroni CNB-2 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 0.79180303 0.834357029 0.841251499 0.837848855 0.848983611 0.822494042 0.810234897 0.786524334 0.838546219 302489703 amyA Desulfovibrio fructosovorans JJ Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio fructosovorans; 0.772624753 0.797197979 225874982 ppx Acidobacterium capsulatum ATCC 51196 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Acidobacterium;species:Acidobacterium capsulatum; 0.884866948 0.825113273 0.82131165 0.833258512 0.817904145 0.846768538 0.819154266 0.822743685 0.809890322 0.896909545 0.881195651 300780984 terc Corynebacterium genitalium ATCC 33030 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium genitalium; 1.088499096 1.088305833 1.09909914 1.070383104 1.050883871 1.108525028 1.067972147 1.077642004 1.044483071 1.082756748 1.132551656 1.059409741 1.045155694 1.039086972 1.020184018 1.027668324 1.089449188 1.101440266 198262880 tktA gamma proteobacterium HTCC5015 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 0.871163365 0.880199227 0.881359524 0.886468921 0.921706173 0.928139108 0.873703197 0.843743754 0.851463204 0.914617678 0.915272202 0.901170235 1.074689185 0.890175907 0.948490709 0.920487817 0.884632448 0.926226844 323365362 nifh uncultured microorganism Nitrogen Nitrogen fixation NA 0.938162841 0.938126744 0.925812668 0.941025443 0.919486818 0.925700568 0.922451115 0.93508478 0.919989967 0.893424272 0.921622446 0.932703493 0.911178434 0.925148319 0.871009576 0.887157595 0.924697076 0.974845099 87302506 nifh Synechococcus sp. WH 5701 Nitrogen Nitrogen fixation NA superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 0.828203474 0.786950239 0.818872262 0.800989479 0.800197062 378581705 cellobiase Pantoea stewartii subsp. stewartii DC283 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea;species:Pantoea stewartii; 0.80286787 0.800949206 0.77985667 0.786219622 0.852996815 0.824095685 0.793292497 0.835621972 344039237 amyA Streptomyces violaceusniger Tu 4113 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces violaceusniger; 1.131209692 1.185437732 1.135862666 1.141182603 1.092712773 1.128845043 1.084342804 1.08837424 1.134667059 1.115405444 1.107518234 1.139119842 1.069728894 1.0851432 1.066718711 1.062904108 1.146688265 1.132258494 327177910 fthfs uncultured bacterium Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria; 1.251265585 1.200783989 1.210711131 1.239034768 1.204315826 1.232162766 1.212072086 1.24226664 1.234179054 1.224220518 1.184459606 1.239423344 1.18814623 1.157624564 1.176167853 1.200440742 1.231879794 1.183196849 114321859 arsc Alkalilimnicola ehrlichei MLHE-1 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Alkalilimnicola;species:Alkalilimnicola ehrlichii; 1.069432286 1.060326082 1.054602456 1.111604473 1.05804152 1.082243285 1.024444486 1.075794128 1.089213734 1.037759619 1.080851423 1.074512162 1.002246759 1.016850528 1.013432033 1.051933683 1.061583038 1.067627397 148252282 soxY Bradyrhizobium sp. BTAi1 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 1.066633142 1.001148564 1.06631586 1.11119105 1.069436794 1.028011353 1.089516484 1.111827315 1.086721713 1.01482908 1.029659728 1.069584479 1.018932507 0.994510044 1.020797337 1.034163906 1.073185363 1.022935188 376396851 xylanase Klebsiella oxytoca 10-5250 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella oxytoca; 1.159512668 1.1598737 1.104136916 1.182690055 1.172505736 1.180780184 1.144822935 1.11744641 1.146739134 1.172613473 1.167787817 1.197286049 1.145762741 1.136469222 1.083607172 1.165247092 1.130812242 1.152164135 242221587 amyA Postia placenta Mad-698-R Carbon Cycling Carbon degradation Starch superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Postia;species:Postia placenta; 1.085232664 0.968329157 0.976067695 0.987466426 0.953091164 1.003479133 0.955901119 0.999039286 1.000397905 0.986884678 0.989200978 0.96016024 0.963637254 0.999329167 1.00082705 0.976546455 0.992527555 1.026458393 126435676 amyA Mycobacterium sp. JLS Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 0.936383155 1.032664987 0.894044773 0.960632467 0.96278026 1.038682111 0.93412301 0.925663866 0.915921978 0.971589281 0.924677283 0.964934914 0.931194577 0.920431708 0.907291142 0.928912515 0.965477011 0.994421417 296123002 Sir Planctomyces limnophilus DSM 3776 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Planctomyces;species:Planctomyces limnophilus; 1.194988401 1.18475551 1.200531865 1.187187021 1.185977528 1.189953988 1.179083925 1.187315006 1.152810865 1.202658456 1.194745501 1.232459147 1.152993604 1.189818198 1.152747871 1.17495086 1.147350118 1.171665205 157911592 fthfs Dinoroseobacter shibae DFL 12 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 0.816441305 0.835123821 0.818868878 0.827770377 0.831567176 0.834615316 0.813421036 0.808825938 0.844943721 0.842057458 0.802334983 0.84896153 0.866891752 0.853086924 0.83982102 325000339 amyA Pseudonocardia sp. P1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Pseudonocardia; 0.953277351 0.954408671 0.949902331 0.973570002 0.962916259 0.955845792 0.942141795 0.91106647 0.950954189 0.919468594 0.935598204 0.951736826 0.898246727 0.922814715 0.862239478 0.906359036 0.979028935 0.942765588 388264548 catechol Hydrogenophaga sp. PBC Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Hydrogenophaga; 1.194267448 1.184052963 1.08552337 1.140722111 1.162461613 1.186210572 1.122047114 1.09638382 1.134618477 1.16620059 1.252782518 1.19663703 1.148958589 1.149037455 1.1326828 1.127037577 1.106731229 1.171890792 55978116 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.76547719 0.824131847 0.795371249 0.785080621 0.822374858 386272986 arsc Methylophaga sp. JAM1 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Methylophaga; 0.831960697 0.835657335 0.831296266 0.784246241 0.816849319 0.821647013 0.82630803 0.814577329 0.813067892 51869940 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 0.805080516 1.001337099 0.834659883 0.856528682 0.805330616 0.784123424 0.985258386 238759206 cellobiase Yersinia aldovae ATCC 35236 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia aldovae; 0.902152582 0.873992934 0.891841857 0.912008228 0.845579278 0.911879856 0.856079813 0.889907276 0.91617231 0.900802148 0.824594936 0.911675382 0.841969433 0.866144663 0.811783359 0.876913068 0.981458797 0.85227548 139478279 mer uncultured soil bacterium Metal Homeostasis Mercury Detoxification superkingdom:Bacteria; 1.077687941 1.112789582 1.096872378 1.098501478 1.088131364 1.092077412 1.047382748 1.113389902 1.098899089 1.033594264 1.066444689 1.088355516 1.038610089 1.014880735 1.058508774 1.058721499 1.105622758 1.11001095 389887940 ppx Coriobacteriaceae bacterium JC110 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae; 0.900027991 0.884465886 0.882304929 0.895004837 0.896723278 0.89588846 0.875813425 0.875360844 0.895975201 0.855298347 0.88980679 0.892857415 0.87322045 0.823995942 0.831488676 0.856682255 0.880822756 0.862560288 380732341 chitinase Corallococcus coralloides DSM 2259 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Corallococcus;species:Corallococcus coralloides; 1.191229777 1.148873384 1.163381762 1.171172757 1.15764521 1.179729375 1.165254985 1.138322468 1.183241262 1.204688271 1.196990205 1.178041696 1.130878135 1.164609189 1.128351607 1.150198429 1.140468468 1.141496368 328839602 amyA Asticcacaulis biprosthecum C19 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis biprosthecium; 0.948357291 0.971761401 0.923747501 0.947784652 0.918368742 0.926848473 0.895311739 0.918322015 0.92762109 0.919117895 0.946093967 0.943196933 0.935994627 0.914337749 0.881660457 0.892647847 0.94777691 0.948286492 302472649 RgaE Streptomyces viridochromogenes DSM 40736 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces viridochromogenes; 0.915659682 0.894912423 0.837356955 0.892865937 0.857997156 0.872038518 0.862020929 0.868625291 0.855625666 0.852383053 0.840929112 0.909318772 0.847875458 0.816370079 0.870311913 0.885409691 0.86666112 365336966 CsoSCA Bradyrhizobium sp. STM 3809 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 1.037840727 1.052575726 0.981698697 1.056342733 1.017200913 0.987549162 1.01783026 0.991603017 1.037597093 0.973658788 0.982670817 1.001839039 0.956392352 0.921430781 0.910916414 0.943545918 0.990931668 1.002516991 240171046 cutinase Mycobacterium kansasii ATCC 12478 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium kansasii; 0.96906312 0.941288715 0.977187491 0.977281777 0.96904664 0.968971225 0.946137215 0.961937346 0.948503749 0.967319408 0.966236369 0.950154179 0.932511867 0.910474202 0.913176375 0.909958941 0.991150991 0.944267916 67158162 one_ring_23diox Azotobacter vinelandii AvOP Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Azotobacter;species:Azotobacter vinelandii; 1.408018369 1.375538458 1.362338741 1.38603838 1.35807415 1.428326574 1.369584543 1.375749794 1.3612931 1.349485239 1.362425569 1.351293738 1.322907742 1.325807164 1.297604082 1.342433353 1.379830859 1.372209863 157146987 cda Citrobacter koseri ATCC BAA-895 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter koseri; 1.025760407 0.947901866 0.994287274 1.022278885 0.953351402 0.937014257 0.952651708 0.949714891 0.955118513 0.958722364 0.983248402 0.970724591 0.970893169 0.962517965 0.969217149 0.919152825 1.013097978 0.949969981 177841258 xylanase Opitutus terrae PB90-1 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 1.039375126 1.071605817 0.99735956 1.045489499 1.036054538 0.988585624 0.98904273 1.009727259 1.067845431 0.972716904 0.984970844 1.046480843 0.983150965 0.975946098 0.962265359 0.998624639 1.010436413 1.006589165 111025787 bphc Rhodococcus sp. RHA1 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 1.24430786 1.19434578 1.230272901 1.237820303 1.182750995 1.167605232 1.20984866 1.233562011 1.230037389 1.215216171 1.273413527 1.293646058 1.190760911 1.150810878 1.17035907 1.177504759 1.193622348 1.187802142 317052136 amyA Desulfurispirillum indicum S5 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Chrysiogenetes;class:Chrysiogenetes;order:Chrysiogenales;family:Chrysiogenaceae;genus:Desulfurispirillum;species:Desulfurispirillum indicum; 0.878273067 0.966492137 0.948133504 0.882254394 0.908020154 0.937936597 0.8478409 0.847268047 0.876804784 0.898271 0.965421467 0.892356187 0.897061099 0.857655163 0.869983989 0.816514417 0.919376997 0.962156145 110834398 dehh109 Alcanivorax borkumensis SK2 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax;species:Alcanivorax borkumensis; 0.772164155 0.789148775 0.814466768 0.883362779 0.79729003 0.821301847 0.822625812 0.849217594 145253493 cellobiase Aspergillus niger Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 0.981904357 0.954251809 0.946780085 1.003116417 0.976904384 0.922449123 0.933843697 0.955453383 1.004861612 0.956899591 0.932074221 0.994443168 0.946218731 0.898592383 0.912993716 0.925047259 0.955677908 0.947247155 83592243 CsoS1_CcmK Rhodospirillum rubrum ATCC 11170 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum rubrum; 0.958749665 0.935689528 0.876964713 0.922481075 0.890454937 1.002030699 0.835693081 0.894793761 0.912627064 0.903665532 0.928964106 0.878798062 0.889675785 0.934296769 0.88504343 0.910261292 0.920170116 0.942576757 329901890 amyA Oxalobacteraceae bacterium IMCC9480 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae; 1.098387093 1.076043269 1.045507034 1.10523467 1.077920188 1.065300841 1.051912219 1.083207777 1.076691138 1.080925876 1.027614575 1.06429372 1.018546684 1.021714713 0.988934049 1.023610889 1.088480163 1.098983333 221134643 amyA Glaciecola sp. HTCC2999 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Glaciecola; 0.944599367 0.964191283 0.913313671 0.952507888 0.916150648 0.932372423 0.916114201 0.958146676 0.930412679 0.908765859 0.901102097 0.913199083 0.879172458 0.911919781 0.858831162 0.907217195 0.943348422 0.941707587 345432970 aps_apra uncultured sulfate-reducing bacterium Sulfur adenylylsulfate reductase NA superkingdom:Bacteria; 0.975225412 1.018340416 0.915318734 1.002919237 0.955929471 0.960980102 0.976279555 0.990765525 0.953110689 0.997961486 0.932357328 0.997967735 0.947624016 0.923271343 0.951952301 0.933417322 0.923090601 0.939789268 118424374 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.896060304 0.882756341 0.825913103 0.855777862 0.831048941 0.865844734 0.825283716 0.90160879 0.824922966 0.83678885 0.85744296 0.813982844 0.867601958 0.911537502 0.855418176 67539872 pec_Cdeg Aspergillus nidulans FGSC A4 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 1.088619695 1.094986748 1.070907959 1.095274394 1.049151818 1.088213139 1.050510946 1.090438835 1.073537604 1.062314277 1.055254705 1.104886916 1.033697676 1.067094419 1.04420116 1.075925534 1.071777442 1.093008424 227069643 nira uncultured archaeon Nitrogen Assimilatory N reduction NA superkingdom:Archaea; 1.21707871 1.169647326 1.196133245 1.2151168 1.167205309 1.19455231 1.177241179 1.189386045 1.186839227 1.181477231 1.18345543 1.204613755 1.172735921 1.174955084 1.164034529 1.182828095 1.192035695 1.175499401 298250105 chitinase Ktedonobacter racemifer DSM 44963 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Chloroflexi;class:Ktedonobacteria;order:Ktedonobacterales;family:Ktedonobacteraceae;genus:Ktedonobacter;species:Ktedonobacter racemifer; 1.086288733 1.062950065 1.086002413 1.100271215 1.057781132 1.092104588 1.05929624 1.089395913 1.0841528 1.082415803 1.049342789 1.080684479 1.039822943 1.046410575 0.995740656 1.043952852 1.114769749 1.079740208 83650206 cysJ Burkholderia thailandensis E264 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia thailandensis; 0.921613175 1.003850131 0.939945323 0.955759956 0.986546516 1.04015975 1.00162455 1.007349208 0.99463015 0.965170324 0.948172914 0.96300662 0.971821009 0.940923719 0.943666092 0.977395423 0.950699451 0.989817856 269219887 amyA Actinomyces sp. oral taxon 848 str. F0332 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 848; 0.99739867 0.983192245 0.952175327 0.974967298 0.987229153 1.00800138 0.956812153 0.913366523 0.990653601 1.055768525 0.984608888 0.965779728 0.946154674 0.970288916 0.916845477 0.923557471 0.985021496 1.018792833 116061983 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.261716398 1.244158365 1.23636946 1.282135942 1.259414631 1.277940107 1.242510095 1.255216791 1.257538687 1.206437662 1.226433433 1.245661265 1.256739946 1.216923496 1.250992687 1.249158849 1.287987888 1.202479456 170605710 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.895501239 0.861958132 0.867116021 0.850588041 0.899464811 0.874709598 0.85423183 0.804135675 0.836391523 0.888407884 0.940155102 221726428 tktA Agrobacterium radiobacter K84 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 0.881925137 0.834052302 0.827376092 0.907751012 0.829871058 0.904376275 0.88524177 0.863642054 0.810565261 0.82255711 0.843251595 0.835109072 0.842422478 66801997 narg unidentified bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.253095887 1.271072536 1.234569775 1.241589477 1.266840907 1.28851836 1.25511791 1.213874531 1.231361738 1.254502572 1.225437887 1.230760283 1.212131593 1.218816089 1.216696604 1.221558756 1.23996779 1.254552404 227069619 nira uncultured archaeon Nitrogen Assimilatory N reduction NA superkingdom:Archaea; 0.892082709 0.945980758 0.850919289 0.883372806 0.879502866 0.910748149 0.862729106 0.849678688 0.891470956 0.898653628 0.86299071 0.855820479 0.85702102 0.913132819 0.846754759 0.882650088 0.929097046 343399074 glucoamylase Actinomyces sp. oral taxon 175 str. F0384 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 175; 0.929586576 0.915369685 0.934243067 0.953100209 0.858212333 0.932121344 0.913449901 0.956752637 0.912644052 0.958067332 0.895794454 0.917306521 0.869854005 0.932301686 0.851884631 0.901212106 0.944353263 0.918250848 209401648 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.192039478 1.16773706 1.152662816 1.199186018 1.175255948 1.207574757 1.160897486 1.175670816 1.178093749 1.159534262 1.160828048 1.199771624 1.155721855 1.148729863 1.077077588 1.13549802 1.187414916 1.195069171 254227743 endochitinase Vibrio sp. Ex25 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 0.859234938 0.812662978 0.88847749 0.860319859 0.825106096 0.809139179 0.91570929 0.842848227 0.819953728 0.838310908 114190169 rgh Aspergillus terreus NIH2624 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 0.922885555 0.908254059 0.926977158 0.949286793 0.858755271 0.914694285 0.878393227 0.896435455 0.940047031 0.897956112 0.955324686 0.907098354 0.882703889 0.886744511 0.8393923 0.887065739 0.938423911 0.913734459 325297828 fthfs Bacteroides salanitronis DSM 18170 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides salanitronis; 0.934814528 0.835321551 0.859305458 0.866940751 0.86113988 0.839830045 0.849724075 0.880892003 0.854889549 0.841554588 0.888724601 0.848559118 0.817765249 0.810120561 0.856504283 0.849559876 315312982 narg Actinomyces sp. oral taxon 180 str. F0310 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 180; 1.17307807 1.187394603 1.107463916 1.152176261 1.116732998 1.140007225 1.113598151 1.150955065 1.134978098 1.13548706 1.082810119 1.142451391 1.063340767 1.102164143 1.067252185 1.097831225 1.158301169 1.171548021 359735234 linb Saccharomonospora azurea SZMC 14600 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora azurea; 1.259198109 1.279647911 1.226573267 1.246917583 1.235452483 1.245446004 1.201885691 1.198856425 1.231507364 1.235654734 1.223803434 1.230386845 1.238895419 1.196638602 1.197528283 1.215196304 1.262430858 1.26249153 222480923 dehh109 Halorubrum lacusprofundi ATCC 49239 Organic Remediation Chlorinated solvents NA superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halorubrum;species:Halorubrum lacusprofundi; 1.018217435 0.978952805 0.907469684 0.948993468 0.93990124 0.925055541 0.887240966 0.939181505 0.947208216 0.993057991 0.92861896 0.955372793 0.956228449 0.924612751 0.844759429 0.878014329 0.947583405 1.013348869 334302697 xyla uncultured bacterium Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria; 1.276442884 1.246039873 1.260317628 1.249339093 1.215807946 1.232397245 1.197082359 1.233771034 1.251801522 1.232152168 1.234625554 1.267226161 1.212660707 1.201181673 1.193220947 1.214675513 1.256630639 1.238172561 209401634 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.946666159 0.967696219 0.985141546 1.004572165 0.952605444 0.985462776 0.954802442 0.977461472 0.966621923 1.033512449 0.990502111 1.028992628 0.931790742 0.956223124 0.88549956 0.978774018 0.931910739 0.948772277 90418679 nhh Aurantimonas sp. SI85-9A1 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Aurantimonas;species:Aurantimonas manganoxydans; 1.222852841 1.2220327 1.201252698 1.202972221 1.188035326 1.243641267 1.168712932 1.21395207 1.195649427 1.192502877 1.192456877 1.212060556 1.181190066 1.175446894 1.186154834 1.200586447 1.227831986 1.218023233 308209430 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 1.239893409 1.199537705 1.20446108 1.272648445 1.211334017 1.248047536 1.244778023 1.248240282 1.208521875 1.195416649 1.208725494 1.219726391 1.177534317 1.165126321 1.156892978 1.180939437 1.235715998 1.205136432 170659059 urec Methylobacterium radiotolerans JCM 2831 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium radiotolerans; 1.267041734 1.255724102 1.251416369 1.251350611 1.221285374 1.269184425 1.207535906 1.244540594 1.229140067 1.243324876 1.227708251 1.270313752 1.200721038 1.227700272 1.206589207 1.249464871 1.252760233 1.24315232 227069649 nira uncultured archaeon Nitrogen Assimilatory N reduction NA superkingdom:Archaea; 0.845335794 0.936506961 0.867734704 0.910748815 0.894031155 0.8865375 0.906386983 0.882645953 0.88164741 0.885528017 0.830421797 0.896152147 0.835599913 0.823835757 0.861804008 0.886335854 0.963683188 332748619 acetylglucosaminidase Streptomyces sp. Tu6071 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 1.295587414 1.226076248 1.260979945 1.241194699 1.220995028 1.212649474 1.205825017 1.19271615 1.260737411 1.184894321 1.236584104 1.189030155 1.215087815 1.171541933 1.180958074 1.175446603 1.28110247 1.2406263 323385281 FBPase Burkholderia sp. CCGE1001 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 1.012466925 0.947844277 0.892930048 0.982775742 0.875978264 0.968592288 0.885400559 0.934387971 0.966109852 0.93497072 0.941342583 0.915795912 0.855441496 0.900112433 0.904110827 0.895160778 0.986259261 0.975877324 380509735 xylanase Xanthomonas sacchari NCPPB 4393 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas sacchari; 1.073883748 1.113957978 1.024496922 1.10033796 1.061739 1.085252596 1.08899255 0.989333245 1.070228091 1.036652854 1.031731311 1.038965817 1.050393007 1.000165273 0.955071811 0.997416296 1.07333166 1.07382531 295414330 PRI Hyphomonas neptunium ATCC 15444 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Hyphomonas;species:Hyphomonas neptunium; 0.79748438 0.849721366 0.88492552 0.830571884 0.783133209 0.827900923 0.793493689 0.835225877 0.870158865 0.833643493 0.837623501 0.858404416 0.834044777 254445727 rgl Verrucomicrobiae bacterium DG1235 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales; 0.892127675 0.926314779 0.85115295 0.860020232 0.895371707 0.99756951 0.884564003 0.815310626 0.912168317 0.897950725 0.877526044 0.901355729 0.856846286 0.871377664 0.845789057 0.924336365 0.902978752 290470052 xyla Meiothermus ruber DSM 1279 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Meiothermus;species:Meiothermus ruber; 0.865249537 0.909195434 0.900026132 0.914923667 0.841115753 0.979870995 0.869004003 0.88367373 0.883772698 0.901859104 0.887377138 0.908075771 0.846974569 0.88158244 0.840485888 0.866997501 0.930553904 0.899300205 325952718 cellobiase Nocardioidaceae bacterium Broad-1 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae; 1.187417697 1.140411183 1.153036342 1.171581297 1.177665096 1.215276891 1.164929387 1.238879614 1.138763337 1.194019952 1.159494332 1.183155486 1.192368806 1.139684671 1.150660604 1.207051236 1.187866617 1.140697332 254254989 mer Burkholderia dolosa AUO158 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia dolosa; 0.89591441 0.878682255 0.916569351 0.904339071 0.900904129 0.933954149 0.912667624 0.880259264 0.894314668 0.906363054 0.872809949 0.907887671 0.855966777 0.865927245 0.847934644 0.997088687 0.894688897 0.908421561 82717665 terc Pseudomonas putida F1 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 0.838023996 0.80704527 0.818627666 0.839141123 0.812325449 296426616 phenol_oxidase uncultured bacterium Carbon Cycling Carbon degradation Lignin superkingdom:Bacteria; 1.049285811 1.000360207 1.016076077 1.093386808 1.057141972 1.001712739 0.997760706 1.001639562 1.034615937 1.003319211 1.005879279 1.050756007 0.985250817 0.973502425 1.162634824 0.957494708 1.036517681 1.031338531 389662725 arsc Nitratireductor aquibiodomus RA22 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Nitratireductor;species:Nitratireductor aquibiodomus; 0.90860001 0.91458404 0.965539112 0.986259778 0.919140305 0.940715939 0.9689318 0.989671114 0.967755554 0.901340671 0.930749107 0.944608441 0.872605691 0.881588444 0.847571701 0.811332574 0.963979961 0.945493378 336099784 narg Oligotropha carboxidovorans OM5 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Oligotropha;species:Oligotropha carboxidovorans; 0.832756567 0.793434177 0.790965982 0.832968263 0.791000458 0.813616766 222354048 hao uncultured bacterium Nitrogen Nitrification NA superkingdom:Bacteria; 0.813096363 0.776323774 149919935 nbac Plesiocystis pacifica SIR-1 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Nannocystaceae;genus:Plesiocystis;species:Plesiocystis pacifica; 0.967248646 0.942656665 0.952590018 0.991033846 0.958431044 0.967759475 0.98697425 0.939230002 0.97913495 0.974403959 0.969582573 0.977087873 0.970811689 0.928859446 0.917657694 0.927414753 0.960229956 0.979224846 324108105 amyA Ruminococcus albus 8 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus;species:Ruminococcus albus; 0.90823278 0.960174713 0.891657044 0.959584607 0.90228234 0.853747984 0.911280143 0.930052988 0.916576165 0.837486746 0.93934392 0.895807172 0.873323421 0.880663789 0.875343736 0.849100995 0.891039846 0.864871537 295441111 thl Burkholderia sp. CCGE1002 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 0.905952362 0.908386893 0.934244766 0.916780756 0.910803354 0.912689092 0.945174685 0.909933738 0.935340992 0.894537005 0.977548012 0.934949546 0.841517155 0.8528282 0.846749481 0.867913398 0.953142723 0.954658805 292489017 tehb Erwinia amylovora CFBP1430 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia amylovora; 1.175748474 1.180956811 1.226815436 1.174005114 1.145151764 1.239434375 1.144031062 1.146330709 1.162055608 1.174653691 1.161346755 1.150528462 1.154214038 1.175764851 1.190390158 1.17401117 1.227022587 1.190399613 338738437 TIM Hyphomicrobium sp. MC1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium; 1.008391204 1.008629367 0.985286103 1.019404752 0.963156102 0.975254202 1.00838155 1.002074236 0.959712224 0.960132009 1.003068842 0.99092641 0.963567099 0.927228426 0.946174138 0.964881481 0.966935989 1.000545882 163258273 pectinase (pectate_lyase) Bordetella petrii Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella; 0.983315929 1.169693036 0.913560078 0.944799482 0.872537356 0.953796354 0.876865249 0.853129477 0.876509003 0.921378671 0.944376006 0.910653679 0.883076805 0.936984447 0.911857108 0.915401072 0.965696275 0.959498569 155964465 nasa uncultured marine bacterium Nitrogen Assimilatory N reduction NA superkingdom:Bacteria; 1.047271555 1.016814935 1.029348063 1.043255721 0.955087053 0.989593159 0.943456682 1.033610889 1.047125861 0.974569188 0.993249269 1.022868695 0.934602041 0.938002159 0.914631124 0.979606694 1.0257944 1.02218224 209967009 tktA Rhodospirillum centenum SW Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum centenum; 0.914879013 0.892225727 0.940441781 0.907372664 0.829542349 0.828511708 0.854682457 0.901697344 0.926217476 0.917196308 0.921407487 0.931937518 0.879547831 0.859675902 0.856773975 0.876923465 0.935323149 0.934170023 334733735 endoglucanase Enterobacter aerogenes KCTC 2190 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter aerogenes; 1.29278741 1.246376658 1.235836348 1.27991393 1.22558914 1.272761375 1.233034506 1.261802829 1.261568286 1.244572958 1.215815657 1.260527389 1.236607496 1.214608956 1.229330585 1.225641071 1.283628135 1.237531239 333908682 nahf Marinomonas posidonica IVIA-Po-181 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Marinomonas;species:Marinomonas posidonica; 0.812222938 0.804761524 0.80562631 0.830489477 0.864323136 0.818763963 0.782393104 0.790834436 0.769501147 0.809772405 357383500 cellobiase Pelagibacterium halotolerans B2 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Pelagibacterium;species:Pelagibacterium halotolerans; 0.861989167 0.895008126 0.831597009 0.898543134 0.816245651 0.830737164 0.896888141 0.890477859 0.869094929 0.850662623 0.864382816 0.891495176 0.906741895 377820817 catb Burkholderia sp. YI23 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 1.078379444 1.051699656 1.03276496 1.033352866 1.012482899 1.046750338 0.972774394 1.04522062 1.048217277 1.023943819 1.019563766 1.046891332 1.028194715 1.009803176 0.991524049 1.039717272 1.041162527 1.053886957 343496960 tktA Vibrio nigripulchritudo ATCC 27043 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio nigripulchritudo; 0.931654945 0.8419619 0.847951802 0.90284588 0.838797613 0.86903886 0.833849856 0.91376178 0.928384446 0.903509896 0.880455742 0.888351798 0.856731604 0.881867335 0.84383269 0.854346022 0.903402963 0.861491247 356415446 tktA Gluconobacter morbifer G707 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconobacter;species:Gluconobacter morbifer; 0.915901067 0.889586931 0.890328716 0.881396145 0.869818934 0.898034563 0.911988216 0.880735121 0.929380909 0.917817768 0.890834514 0.915480067 0.866518679 0.926870742 0.872410543 0.836363237 0.873813391 0.904362828 260089370 acetylglucosaminidase Streptomyces flavogriseus ATCC 33331 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces flavogriseus; 1.262515421 1.260471762 1.259806717 1.241997584 1.246068511 1.305307169 1.254933101 1.262703606 1.243429537 1.263258214 1.261826592 1.260114755 1.228261245 1.245829909 1.223336547 1.23765969 1.258448156 1.274336537 85671757 ppx Roseovarius sp. 217 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 0.769239081 0.828842368 0.896734466 0.763347181 0.849620346 0.808299984 0.827305452 0.814092335 0.857986196 0.89212882 0.813846222 335367346 fthfs Bacillus coagulans 2-6 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus coagulans; 0.780980257 0.824267702 111073755 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 1.152249724 1.133689811 1.115317018 1.138003575 1.113386507 1.151087006 1.126136399 1.126946493 1.112448862 1.120962926 1.098471682 1.139600182 1.086125316 1.102069359 1.05945411 1.113359571 1.119232754 1.145788208 115372336 terc Stigmatella aurantiaca DW4/3-1 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 0.880284961 0.942957791 0.879693307 0.911952712 0.868997463 0.913075105 0.864401688 0.898580847 0.90848922 0.918805155 0.887416394 0.90450428 0.88023212 0.883951303 0.836024131 0.871514557 0.915111985 0.957592325 4204379 catechol_b Sphingomonas sp. A8AN3 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 0.860297606 0.90241344 0.918572189 0.884289907 0.90560214 0.910169848 0.92082405 0.893628432 0.80474852 0.854973564 0.901413066 0.891305732 0.844270828 0.827099373 0.807680546 0.898795434 0.890285764 51869938 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 1.169208404 1.161096045 1.138607221 1.142233917 1.153026666 1.164227008 1.141562201 1.14780127 1.134701303 1.148341421 1.10793076 1.144902973 1.094631563 1.097271622 1.027967817 1.108736177 1.158823469 1.176510358 89145072 ppk Microbacterium esteraromaticum Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Microbacterium; 0.911031712 0.927930167 0.899273959 0.886422604 0.860803574 0.922657559 0.82974787 0.87387467 0.874193243 0.946299462 0.826625437 0.911814429 0.808043618 0.892895276 0.818981899 0.874293234 0.897389199 0.964299925 50727106 endochitinase Microbulbifer hydrolyticus Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Microbulbifer; 0.836850044 0.890987593 0.87141042 0.951644053 0.890498635 0.990227396 0.948768701 0.903398002 0.867905429 0.906704559 0.880982246 0.927494831 0.882258419 0.902684479 0.912874647 0.900801631 0.973215722 0.9431704 91690461 mhpa Burkholderia xenovorans LB400 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 1.423076595 1.361605433 1.366190665 1.366135986 1.320559787 1.396344274 1.325994547 1.353968849 1.373373283 1.349890058 1.324795291 1.336069662 1.320404953 1.325186466 1.27527808 1.32272512 1.405602167 1.362343825 134106731 glx Cryptococcus neoformans var. neoformans B-3501A Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Tremellomycetes;order:Tremellales;family:Tremellaceae;genus:Filobasidiella;species:Cryptococcus neoformans; 1.081032962 1.082651538 1.115369574 1.096516401 1.107352948 1.110120272 1.105996487 1.130157189 1.087678691 1.079205764 1.102789526 1.078183167 1.031804871 1.055610276 1.051342893 1.022050529 1.068981578 1.104113673 378763864 FBPase Sinorhizobium fredii HH103 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium fredii; 0.767155546 0.873211367 0.823694777 1.026895457 0.848483666 160917548 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.935103994 0.99062278 0.967568158 0.965653709 0.9702863 0.967335814 1.00217922 0.998439458 0.894676571 0.970684434 0.973497771 0.948668505 0.953143958 0.929686561 0.891282264 0.913521486 0.96201184 0.960595988 255293120 xylj uncultured bacterium Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria; 1.294599129 1.299760155 1.252115321 1.268720567 1.249351598 1.315502386 1.196009732 1.178326867 1.223101272 1.278101372 1.26034508 1.247455762 1.237642535 1.254980542 1.219044578 1.265284152 1.283466152 1.28397789 171678197 protease_aspartate_fungi Podospora anserina S mat+ Carbon Cycling Carbon degradation protein superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Lasiosphaeriaceae;genus:Podospora;species:Podospora anserina; 0.903283069 0.862229818 0.900614035 0.956978067 0.929434716 0.970909516 0.904520851 0.921115545 0.863179349 0.880415095 0.894835804 0.895227018 0.888357405 0.929797854 0.832040125 0.824508431 0.88863336 0.915010105 229784999 inulinase Bifidobacterium angulatum DSM 20098 Carbon Cycling Carbon degradation Inulin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium angulatum; 0.913013802 0.905271272 0.878290195 0.870193615 0.899328262 1.007982657 0.833437896 0.85281965 0.884728786 0.92612917 0.897097418 0.835928497 0.86280118 0.99294938 0.84184938 0.853950664 0.910746332 0.905534157 196478925 cysI Phenylobacterium zucineum HLK1 Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Phenylobacterium;species:Phenylobacterium zucineum; 1.568317999 1.541220068 1.513096632 1.512002926 1.490826593 1.572337832 1.478138106 1.524263242 1.485792741 1.504398224 1.497576607 1.49739891 1.477697401 1.502402357 1.480628225 1.517120636 1.528052912 1.51377653 340027602 terc Paracoccus sp. TRP Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus; 0.809180029 0.922755861 0.868716207 0.974730276 0.901386999 0.885533319 0.846438697 0.848971215 0.906752483 0.891006555 0.847342337 0.82714647 0.798755348 0.882370961 0.910306718 0.886812253 241871125 terc Weissella paramesenteroides ATCC 33313 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Leuconostocaceae;genus:Weissella;species:Weissella paramesenteroides; 0.928523547 0.895381031 0.942438541 0.95104271 1.015964187 0.96769985 0.912625638 0.831473161 0.908968889 0.946315909 0.927695768 0.934118004 0.926934448 0.996881061 0.903836775 0.899250854 0.902277289 0.935931721 390616129 amyA Mycobacterium chubuense NBB4 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium chubuense; 0.832350608 0.8738415 0.874908494 0.836442952 0.806347716 0.854845812 0.80881887 0.875991036 0.848860469 0.829981864 0.821532757 0.835843021 0.831091835 0.869372603 384523291 acetylglucosaminidase Saccharomonospora glauca K62 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora glauca; 0.893321349 0.850296318 0.913293762 0.922996255 0.837535996 0.836046432 0.856675291 0.887990199 0.859322366 0.882636183 0.852729641 0.853053572 0.901486401 0.872865973 1617425 dmsa Rhodobacter capsulatus Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter; 0.911152128 0.916335166 0.865204597 0.89748579 0.834252361 0.99128914 0.811062976 0.862715064 0.881420735 0.89393765 0.871184068 0.856148155 0.817637923 0.847882997 0.875782541 0.9165131 0.932011526 301341858 cutinase Pseudomonas pseudoalcaligenes Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.883374346 0.835553012 0.852339081 0.830591117 0.813955451 0.840640229 0.805321015 0.824990362 0.869903172 0.878995309 0.86482743 0.875447442 0.803029103 0.843741831 0.841671307 0.828679832 0.844072422 0.876842432 403402246 nahb Gordonia namibiensis NBRC 108229 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia namibiensis; 1.011492719 1.032088783 0.986388512 1.092650677 1.02374582 0.972863798 1.015783953 1.063255541 1.059393982 1.00957356 0.988702941 1.074515331 1.011117177 1.039053981 1.036511826 1.022584951 0.982278416 0.973370508 26278708 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.271596586 1.227122739 1.209591477 1.18016018 1.164813489 1.23610197 1.142912576 1.200484659 1.148835942 1.160061474 1.148194793 1.182908491 1.15509127 1.189595195 1.157610759 1.191919222 1.19961831 1.180886038 145319048 amyA Enterobacter sp. 638 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 0.79778856 0.807453345 0.88200824 0.873911157 0.855685132 0.907003591 0.932866639 0.889133362 0.848656689 0.844054213 0.904539802 0.853965298 0.851271612 0.83916789 0.820934311 0.819073427 0.833752573 86160543 amyA Anaeromyxobacter dehalogenans 2CP-C Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter;species:Anaeromyxobacter dehalogenans; 0.826494383 0.83274627 0.846028701 0.821170157 0.800482821 0.835337455 0.836179792 0.86061791 0.85533083 325556283 lmo Rhodococcus equi ATCC 33707 Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus equi; 1.133533526 1.096257294 1.113885046 1.143236532 1.138534711 1.152247139 1.131114157 1.115786237 1.134734438 1.113344995 1.112408852 1.146673977 1.09811924 1.079227427 1.079046399 1.120372437 1.132886705 1.088355279 66045891 nfsa_2 Pseudomonas syringae pv. syringae B728a Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae; 0.837122506 0.825028129 0.870937604 0.853515017 0.854082033 0.871496779 0.91204964 0.853815328 0.828360049 0.849263496 0.813441727 0.82284605 0.850258624 0.861140978 229818250 amyA Bifidobacterium angulatum DSM 20098 = JCM 7096 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium angulatum; 0.882462927 0.896356585 0.872812192 0.887427786 0.812669911 0.897406735 0.825366571 0.801633122 0.890011751 0.859849693 0.977964387 0.824852001 0.835021569 0.876507732 0.817837913 0.924334551 0.909196339 379989845 dsrB uncultured bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.114282729 1.110830199 1.122493074 1.117926547 1.065669763 1.116829399 1.057597395 1.094738841 1.118200199 1.099555121 1.148150786 1.101918122 1.057648541 1.112587901 1.088790118 1.086145445 1.136101446 1.125445594 387888075 arsc Escherichia blattae DSM 4481 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Shimwellia;species:Shimwellia blattae; 1.065156674 1.042236155 1.054632727 1.064982207 1.044551773 1.074888964 1.001835548 1.036884232 1.067968226 1.061727081 1.036380598 1.058286643 1.016236027 1.038566523 1.002480875 1.02921975 1.052595128 1.0567198 222354304 hao uncultured bacterium Nitrogen Nitrification NA superkingdom:Bacteria; 1.035365303 1.070302357 1.006586425 1.002442157 0.942117521 1.019725359 0.998922729 0.951869857 1.014675051 1.015017099 0.960531959 1.012549848 0.947599135 0.990179556 0.964140364 0.935634689 1.006532144 1.042872574 347734996 acetylglucosaminidase Azospirillum amazonense Y2 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum amazonense; 1.400009246 1.378941421 1.357484843 1.371370103 1.352727053 1.387214705 1.361360917 1.351384718 1.360379815 1.329168145 1.361112941 1.374148741 1.339055599 1.319765374 1.340943547 1.341908909 1.3695636 1.332226451 261407242 xylanase Paenibacillus sp. Y412MC10 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 0.915106256 0.847426939 0.87180165 0.830880474 0.833948524 0.830794655 0.834324107 0.829495551 0.795018438 0.841273301 0.851143238 56475804 ben_bcla Aromatoleum aromaticum EbN1 virulence NA NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 1.221080559 1.23995445 1.250766021 1.24487838 1.253264602 1.254552087 1.243769783 1.252112155 1.217084203 1.221729519 1.234564669 1.251387636 1.233779259 1.180118505 1.258059239 1.219102902 1.23882943 1.20858851 312113154 TIM Rhodomicrobium vannielii ATCC 17100 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Rhodomicrobium;species:Rhodomicrobium vannielii; 1.023245853 0.958941408 1.017998445 1.023096998 1.023191322 1.030743568 1.036479424 1.011493304 1.023665462 0.998452973 1.011588274 0.994380552 0.990346896 0.949221165 0.92619666 0.931891765 0.98970304 1.020692539 378550097 amyA Citricoccus sp. CH26A Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Citricoccus; 0.812409103 0.879911678 0.78606293 0.864224889 0.893562001 0.793435509 0.855136594 0.83848854 0.86836587 323365716 nifh uncultured microorganism Nitrogen Nitrogen fixation NA 1.103314386 1.09023832 1.064405107 1.116861759 1.089888523 1.094450546 1.050751939 1.123158424 1.080145323 1.089431625 1.061230635 1.110746702 1.100922282 1.079648815 1.070467466 1.080194817 1.112888419 1.070195681 262084342 ppx Gordonia bronchialis DSM 43247 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia bronchialis; 1.099062835 0.981441428 0.991464402 1.039585147 0.950007279 1.038923914 0.927973088 0.972078944 1.020026588 1.003873776 0.956110266 0.990114196 0.963577844 1.001799792 0.99617062 0.988381596 1.066808904 1.0159828 66267662 oxdb Pseudomonas sp. K-9 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.78495313 0.792700739 0.825519775 0.829837422 46115742 pec_Cdeg Gibberella zeae PH-1 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Gibberella;species:Gibberella zeae; 0.992179904 0.965131088 0.981717427 1.015089917 0.982805525 0.977240748 0.971217111 1.047099692 1.013297729 0.991021069 0.961743632 0.998869667 0.964093383 0.953586261 0.952241637 0.950920814 0.993486597 0.994145958 116225255 alginase Candidatus Solibacter usitatus Ellin6076 Carbon Cycling Carbon degradation Alginate superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 1.042490267 0.960112717 0.960837328 1.0369468 0.982300277 0.954961716 1.053652556 1.01006008 0.997876215 0.961802332 0.950241375 0.959311784 0.929155766 0.86264272 0.912632445 0.933977011 1.02069051 0.957748841 172041825 mnp Heterobasidion annosum Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Russulales;family:Bondarzewiaceae;genus:Heterobasidion; 0.926169312 0.870873145 0.904118037 0.943479492 0.924635576 0.883972136 0.95064717 0.939312726 0.924326702 0.911363375 0.954445578 0.953705525 0.870390336 0.844416154 0.837061517 0.889302828 0.938325 0.908314721 338739048 PRI Hyphomicrobium sp. MC1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium; 0.886441213 0.872482423 0.857524288 0.898592112 0.860366963 0.981457808 0.839982509 0.872255939 0.855882782 0.827341793 0.90444771 0.880770445 0.866017665 0.866131967 0.833264941 0.865931562 0.914410088 0.900775007 315504334 amyA Micromonospora sp. L5 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Micromonospora; 1.010113067 1.037210236 0.995268357 1.026358534 1.003531628 1.012943457 1.002156728 0.950854541 0.980421539 1.002368807 0.993283699 0.984175947 0.979860667 0.978786986 0.957556674 0.977133232 1.015659028 1.026258309 359821952 bphd Mycobacterium rhodesiae NBB3 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 1.063601037 1.0104012 1.024762566 1.066569402 1.048642925 1.063056327 1.039930517 1.02041656 1.033262736 0.99639906 1.002825799 1.035733762 0.996546717 0.989392192 0.966520699 0.987298926 1.055438771 1.025677687 335421035 Sir Salinisphaera shabanensis E1L3A Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Salinisphaerales;family:Salinisphaeraceae;genus:Salinisphaera;species:Salinisphaera shabanensis; 0.958351242 0.963777305 0.888139216 0.888805084 0.845111839 0.869234592 0.820406727 0.89006705 0.882019595 0.814362438 0.842109908 0.893448499 0.868508808 0.881108584 0.937954982 78696499 ppx Bradyrhizobium sp. BTAi1 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.828427314 0.831495923 0.86799975 0.825538111 0.82718612 0.809643264 0.834279688 0.850348465 0.832018284 0.854767399 0.832815586 0.833906953 0.79620019 0.810768655 0.85216639 85775236 terc Anaeromyxobacter dehalogenans 2CP-C Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter;species:Anaeromyxobacter dehalogenans; 0.889667299 0.943922584 0.949981452 0.929315852 0.895659005 0.919985464 0.898199066 0.884278021 0.873435842 0.913624671 0.935483228 0.9117209 0.920722265 0.923800771 0.844849929 0.89222034 0.905185012 0.919748883 336100294 PRK Oligotropha carboxidovorans OM5 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Oligotropha;species:Oligotropha carboxidovorans; 0.957222165 0.97167739 0.9209652 0.938939916 0.910438949 0.995886649 0.953656254 0.941141097 0.951867641 0.939536102 0.884735285 0.923134365 0.893006162 0.932475534 0.896377782 0.871718207 0.93736631 0.986926612 37521865 PRK Gloeobacter violaceus PCC 7421 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Cyanobacteria;class:Gloeobacteria;order:Gloeobacterales;genus:Gloeobacter;species:Gloeobacter violaceus; 1.026667571 0.971464248 1.005932152 1.012927802 1.000860494 1.072314745 1.021880961 1.002169238 0.968361343 0.966388903 0.97020466 1.033908446 0.934578492 0.97666788 0.97041006 0.930062387 1.020593823 1.027477576 60476318 dsrB uncultured bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.870221351 0.866999543 0.831771221 0.885864106 0.845197029 0.86186998 0.824540162 0.819083045 0.869310128 0.902475777 158110579 tfda Frankia sp. EAN1pec Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 1.230234024 1.219833795 1.202688323 1.177828774 1.203301966 1.205222909 1.187751347 1.166371961 1.176538932 1.210806596 1.192324148 1.197564902 1.168117684 1.168634738 1.149216513 1.167298048 1.247659888 1.234762971 164455294 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 0.841136102 0.88386486 0.841886212 0.832600367 0.835402997 0.83561305 0.818555701 0.817062043 0.838318296 0.813766021 0.828646844 0.83394866 0.849470301 0.817032589 145573242 protease_serine_fungi Aureobasidium pullulans Carbon Cycling Carbon degradation protein superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Dothideales;family:Dothioraceae;genus:Aureobasidium; 1.083802522 1.110271499 1.076655119 1.056550465 1.074389832 1.078162792 1.04164688 1.063675701 1.044463015 1.046556384 1.051514877 1.068270096 1.05373316 1.064961943 1.017917266 1.053276445 1.071251535 1.097880985 373880181 aps_apra uncultured bacterium Sulfur adenylylsulfate reductase NA superkingdom:Bacteria; 1.048732985 1.070458736 1.050805588 1.09079803 1.057097419 1.072468263 1.04984027 1.080797754 1.0566063 1.051918573 1.030922281 1.066566365 1.01975624 1.000646263 0.997495321 1.061765118 1.101165728 1.060274467 254444955 amyA Verrucomicrobiae bacterium DG1235 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales; 0.9241799 0.989491094 0.935022554 0.894676712 0.885805426 0.943356267 0.898021949 0.911834598 0.871367576 0.882497133 0.861640132 0.908710225 0.816138852 0.824279395 0.937638936 0.895333749 0.931493482 57642107 cda Thermococcus kodakarensis KOD1 Carbon Cycling Carbon degradation Starch superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Thermococcus;species:Thermococcus kodakarensis; 0.823974933 0.789938879 0.831259991 0.836523982 0.82859189 0.793115852 0.878924236 0.809907974 0.797423467 0.77900772 0.827336805 0.894480706 72122182 poba Ralstonia eutropha JMP134 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 1.121489286 1.13314803 1.070501109 1.100979373 1.068069742 1.152547898 1.06160782 1.083922763 1.090035543 1.094618587 1.056274138 1.089238325 1.067389115 1.059262577 1.079684046 1.0810529 1.112135062 1.123598224 120595003 xlnd Polaromonas naphthalenivorans CJ2 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 0.830121301 0.877702215 0.834950187 0.887204254 0.835715576 0.88791995 0.843007448 0.81320402 0.883943687 0.830301349 0.839278332 0.82265198 0.833882992 0.888179163 0.864604447 109391490 chitinase Yersinia sp. MH-1 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia; 0.866406313 0.933308001 0.862964796 0.817005339 0.92577584 0.80297342 0.877474898 0.842221252 0.942433987 0.825221603 0.827335566 0.822866223 0.903841063 83317118 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.890412672 0.897211033 0.951259055 0.93950824 0.99526047 0.952729209 0.99592797 0.973006362 1.010706826 0.983063294 0.994310413 0.951019694 0.990588854 0.920500894 0.982831775 0.974904681 0.966156796 0.917030002 387867361 phytase Edwardsiella tarda FL6-60 Phosphorus Phytic acid hydrolysis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Edwardsiella;species:Edwardsiella tarda; 1.054861603 1.111915935 1.055453514 1.091635836 1.117581919 1.096577841 1.040968708 1.061605182 1.02912276 1.105168333 1.040222218 1.090611473 1.052809764 1.070768134 1.047109878 1.046039749 1.074773608 1.103379681 118029486 arsc Burkholderia phymatum STM815 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 1.059109323 1.033251311 1.039517459 1.057814923 0.997366496 1.05102516 0.995729021 1.030224733 1.044605341 1.020500239 1.026676222 1.017766981 1.020468927 1.022556851 0.982200022 1.016365079 1.049555758 1.028971702 34017130 dsra uncultured bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.077552262 1.060411426 1.030993107 1.079208519 1.060652497 1.06453172 1.058972172 1.072694495 1.081009788 1.053472107 1.03529572 1.080293067 1.053171175 1.030418549 1.07444139 1.064481668 1.079430767 1.055011239 299061689 acetylglucosaminidase Erwinia billingiae Eb661 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia billingiae; 0.758282964 0.778966208 402271696 cmci Klebsiella sp. OBRC7 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella; 0.938451102 0.930760512 0.926847707 0.959735266 0.913500172 0.892187451 0.935379371 0.961610011 0.948422807 0.901962443 0.880546313 0.930068718 0.923592315 0.887705276 0.937683328 0.946044173 0.950337097 0.895615196 357077367 limeh Frankia sp. CN3 Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 0.849049691 0.847048157 0.818253038 0.897563884 0.858506853 0.82610609 0.831040828 0.860607439 0.856002843 0.845054658 0.852188669 0.807652368 0.815256106 0.810336345 0.852419811 0.853756159 409407761 poba Herbaspirillum sp. GW103 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herbaspirillum; 1.06246499 1.096971688 1.04717592 1.049974466 1.067736367 1.088735103 1.021868855 1.040897058 1.013342553 1.070323962 1.051919418 1.058765126 1.081603972 1.030102647 1.008346477 1.078143581 1.095194694 1.070075377 320096107 amyA Actinomyces sp. oral taxon 178 str. F0338 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 178; 1.040350443 1.002449116 0.94326615 0.987154954 0.938035253 0.985017808 0.943606476 0.966296476 0.929563608 0.976815281 0.950426107 0.934472123 0.888617414 0.887308978 0.844559482 0.904833068 0.907071493 0.935334552 294343792 alkh Salinibacter ruber M8 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Bacteroidetes;order:Bacteroidetes Order II. Incertae sedis;family:Rhodothermaceae;genus:Salinibacter;species:Salinibacter ruber; 0.85490725 0.840042263 0.870818917 0.908396471 0.916821573 0.861090295 0.940802006 0.884610847 0.894001988 0.902365274 0.821492964 0.891157376 0.77896211 0.814805646 0.915681108 0.827874613 293189346 xylg Actinomyces odontolyticus F0309 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces odontolyticus; 1.245253681 1.212940196 1.219426351 1.24642084 1.180526492 1.236584844 1.176305344 1.215681997 1.214277268 1.200771638 1.199690374 1.188853934 1.190740072 1.197549229 1.170379878 1.186744187 1.232007689 1.191998179 119670771 arsc Azoarcus sp. BH72 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 0.771235596 0.797611876 39943562 cutinase Magnaporthe oryzae 70-15 Carbon Cycling Carbon degradation Cutin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 1.063809662 1.038628844 1.065905151 1.042121519 0.99290883 1.046509027 1.004958383 1.028482482 1.055814703 1.025912893 1.040173724 1.042966029 0.991910719 1.014972993 0.987770524 1.017086775 1.05753953 1.070189526 4105709 one_ring_23diox Pseudomonas fluorescens Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.792051637 0.786085585 0.825732793 0.79738401 0.816178692 0.831902072 0.816197311 342130856 urec Mycobacterium colombiense CECT 3035 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium colombiense; 0.865527444 0.793200001 0.874096745 0.885706412 0.793248106 0.786903004 0.830567533 0.845290933 0.911380912 0.82486088 0.815912307 0.80877211 0.853283348 0.851705583 323374071 oxdb Acidovorax avenae subsp. avenae ATCC 19860 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax avenae; 0.917540933 0.893538175 0.866741323 0.92495686 0.850351731 0.887938602 0.859771992 0.90257774 0.908431309 0.932160037 0.885698274 0.924753079 0.857503307 0.924645651 0.843147949 0.863528635 0.915828352 0.928690673 226347405 EF1a_Jakobida Jakoba libera Other Phylogenetic NA superkingdom:Eukaryota;family:Jakobidae;genus:Jakoba; 0.817432706 0.809839713 0.923810824 0.987549706 0.828533573 0.848372619 0.82307879 0.817421449 0.873617555 0.83102264 334109923 cysJ Methylomicrobium album BG8 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylomicrobium;species:Methylomicrobium album; 1.064785733 1.069771556 1.091584206 1.041482258 1.086240403 1.092021682 1.08456291 1.038158819 1.064323469 1.081596468 1.091935791 1.068825558 1.067743835 1.056369607 1.063254156 1.102092676 1.095238407 1.104833102 323366394 nifh uncultured microorganism Nitrogen Nitrogen fixation NA 1.08684764 1.075637915 1.061160629 1.054037561 1.095732957 1.08706662 1.021971106 1.062431716 1.079238604 1.065110752 1.070129335 1.069690989 1.046572906 1.00243718 1.038759221 1.014257371 1.095686774 1.085674034 409393882 nosz Pseudomonas sp. Chol1 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 1.367400447 1.340506639 1.285997782 1.267227581 1.255515503 1.320800261 1.268200006 1.247309675 1.246843243 1.257050785 1.259664742 1.234279081 1.257436976 1.214237284 1.178891315 1.244357774 1.326084862 1.258365441 188533562 amyA Erwinia tasmaniensis Et1/99 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia tasmaniensis; 1.005540336 0.950600975 0.839724354 0.909732265 0.911880097 0.924906041 0.922871314 0.93057535 0.966488225 0.933333484 0.877378386 0.918069256 0.926804261 0.942192798 0.859788092 0.91508837 0.938796854 0.9492354 345638050 chitinase Streptomyces zinciresistens K42 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces zinciresistens; 1.265677866 1.219754582 1.225845024 1.264129617 1.235668332 1.245601608 1.215488053 1.234077956 1.239225182 1.206877875 1.204990541 1.22207095 1.174873686 1.159453943 1.194357059 1.178317748 1.275063638 1.21776575 363420760 amyA Rhodococcus pyridinivorans AK37 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus pyridinivorans; 1.133623663 1.126152167 1.120643764 1.128469808 1.102565407 1.121267893 1.076881652 1.074580162 1.102877418 1.091762522 1.091302158 1.106269539 1.095905455 1.05335621 1.087077752 1.092159645 1.140481558 1.093449088 295440743 cysJ Burkholderia sp. CCGE1002 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 1.452049751 1.438127384 1.416393649 1.448232847 1.405362333 1.42472682 1.390384239 1.393610397 1.410265069 1.408588638 1.403961059 1.418031118 1.398734738 1.375030818 1.38376642 1.375913749 1.439658293 1.41123326 260418135 urec Silicibacter lacuscaerulensis ITI-1157 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria lacuscaerulensis; 0.976321832 0.953304372 1.030952821 0.948989242 0.936490726 1.025196138 0.859314927 0.932078686 0.969979066 0.975174994 0.950796907 0.976022306 0.901945224 0.997328991 1.068404438 0.974657809 1.06275372 1.053212422 253688567 pectinase (pectate_lyase) Pectobacterium carotovorum subsp. carotovorum PC1 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium carotovorum; 0.980816715 1.019377506 0.930648899 0.96700582 0.928076922 0.956341571 0.939998945 0.954292244 0.9820895 0.947220307 0.910498422 0.950400958 0.919304285 0.931096549 0.853391457 0.911008051 0.958684501 1.021201001 297197274 alginase Streptomyces sviceus ATCC 29083 Carbon Cycling Carbon degradation Alginate superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 1.061334163 1.044137358 1.029907737 1.054521802 1.062270665 1.0821451 1.005289584 1.03014967 1.04684558 1.006765085 0.991411502 1.005801676 1.027317241 1.017519027 1.000054249 1.010413638 1.048839348 1.046372035 257790482 ppx Eggerthella lenta DSM 2243 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Eggerthella;species:Eggerthella lenta; 1.297249718 1.279609708 1.247707738 1.253720299 1.246020798 1.272787189 1.22154801 1.257584102 1.277992281 1.281141123 1.261076751 1.26842506 1.213144322 1.240203314 1.193139311 1.231688746 1.264771065 1.274908064 113529047 xylj Ralstonia eutropha H16 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 1.179228993 1.166106249 1.154322014 1.193162789 1.153543798 1.191417328 1.169265077 1.218557641 1.165702506 1.164579123 1.146764309 1.192953926 1.131134151 1.156162495 1.141228258 1.18078733 1.172987185 1.16857283 227350570 fthfs Lactobacillus vaginalis ATCC 49540 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus vaginalis; 1.136450683 1.077359304 1.091790587 1.141633933 1.092278042 1.054585922 1.119537193 1.118243882 1.118900635 1.062647617 1.114093576 1.141046352 1.099677591 1.048193365 1.057393521 1.111269299 1.11170291 1.074443981 50880266 pmoa uncultured methanotrophic alpha proteobacterium Carbon Cycling Methane Methane oxidation superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 0.847063771 0.823636508 0.787136029 0.866644203 0.861211978 0.827077365 0.832938289 0.835962821 0.793619988 0.783581038 0.895625001 0.832549324 256359684 ara Catenulispora acidiphila DSM 44928 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 1.114027821 1.111516635 1.110502906 1.108066392 1.108684567 1.135553754 1.098092834 1.109062197 1.095543071 1.123102566 1.113315697 1.082677866 1.076878335 1.078630584 1.045893705 1.067186427 1.119055303 1.126462211 160917486 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.826442198 0.860038314 0.852715686 0.8232933 0.847858322 0.811217144 0.816700555 0.845520483 0.880576055 87135366 vdh Novosphingobium aromaticivorans DSM 12444 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium aromaticivorans; 1.04680156 0.977719183 1.02808787 1.050319329 0.97947841 1.004707944 0.951028905 1.015793629 1.037037356 0.993917095 1.020499424 1.048881292 0.988557591 0.99876488 0.978244858 1.00459854 1.027295023 1.008855261 166362991 PRI Microcystis aeruginosa NIES-843 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Microcystis;species:Microcystis aeruginosa; 1.006979378 0.980019395 0.984980523 0.989500314 0.973399454 1.002470044 0.989310026 0.971766632 1.001354511 0.97223858 0.991719804 0.997963238 0.926684722 0.93634339 0.916936408 0.972501677 0.956908539 0.971931323 29160355 exoglucanase Acremonium sp. Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;genus:Acremonium; 1.160737654 1.113173913 1.139234615 1.160160799 1.124002755 1.121544014 1.125484202 1.13895492 1.173182755 1.156581331 1.132925926 1.160663824 1.086241442 1.117626674 1.107607353 1.103590059 1.140838867 1.134018555 22135562 axe Penicillium purpurogenum Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces; 1.09680233 1.062225897 1.067884005 1.089285566 1.052371594 1.063367732 1.059857751 1.06153623 1.102160371 1.074667958 1.072511673 1.080367084 1.03091583 1.021062051 1.019953022 1.053021045 1.109099323 1.080608585 407748041 nhh Agrobacterium albertimagni AOL15 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium albertimagni; 0.811308184 0.791684793 292821337 amyA Actinomyces odontolyticus F0309 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces odontolyticus; 1.117004484 1.151823591 1.061993376 1.109007144 1.072686962 1.118794438 1.052865863 1.051013549 1.064096578 1.103006788 1.065399416 1.088684309 1.062702529 1.089370605 1.059135046 1.098569985 1.117157985 1.140499353 328881936 amyA Streptomyces venezuelae ATCC 10712 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces venezuelae; 1.223979705 1.274168489 1.162690831 1.115717674 1.140964235 1.227084018 1.139523956 1.137119112 1.144286908 1.202723339 1.1792739 1.140824643 1.145194353 1.165386598 1.092150393 1.113444048 1.172753406 1.194850815 297156572 alkk Streptomyces bingchenggensis BCW-1 Organic Remediation Others NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces bingchenggensis; 0.929040581 0.976141879 0.890363774 0.977354745 0.905506805 0.883805824 0.895906514 0.945374169 1.117259174 0.910677763 0.907295065 0.974064799 0.938900013 0.897517648 0.887893043 0.919851561 0.951068115 0.919836164 218758653 nifh Desulfovibrio vulgaris str. 'Miyazaki F' Nitrogen Nitrogen fixation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio vulgaris; 0.851382035 0.883898727 0.849213171 0.823101541 0.828127348 0.794025185 0.838195693 0.847740222 0.843850156 0.826341419 0.871008823 0.851265644 49529682 vana Acinetobacter sp. ADP1 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 1.003271984 0.913525369 0.96641255 1.028388174 0.985661094 0.985048178 0.977285305 1.007897453 1.014918693 0.974436906 0.952090193 0.957728718 0.964105565 0.910809556 0.89788902 0.930323633 0.989384653 0.989679671 94551840 amyA Candidatus Koribacter versatilis Ellin345 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Acidobacteria;genus:Candidatus Koribacter;species:Candidatus Koribacter versatilis; 1.102311108 0.855744546 0.807464321 0.890900713 0.875740337 1.090817605 0.913728652 0.845281512 0.809107874 0.822561109 0.878587215 0.820436319 71156382 fthfs Nocardioides sp. JS614 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 1.217087885 1.166242289 1.213090654 1.154116657 1.190631617 1.20071704 1.129056446 1.139506109 1.088445941 1.136702543 1.153983322 1.131688355 1.119484687 1.154240049 1.081247291 1.131633956 1.138171835 1.173710172 153798558 amyA Actinomyces odontolyticus ATCC 17982 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces odontolyticus; 1.008057113 0.970747678 1.025975849 1.002369816 1.029277941 1.018555444 1.028070753 1.039915988 1.029322492 0.978209112 0.959661064 0.968481638 0.989315773 0.965952747 0.95063376 0.932009728 0.98501108 0.996733145 39648700 hbh Rhodopseudomonas palustris CGA009 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 1.038571259 1.041481766 1.059429675 0.999382666 1.064241286 1.007885748 0.951026708 1.016214095 1.035046329 0.9959572 0.950550802 1.012938796 0.966708971 0.953241026 0.886070285 0.984539976 1.02776895 1.045466582 266630485 acetylglucosaminidase Caulobacter segnis ATCC 21756 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter segnis; 1.072128703 1.035736401 1.032557552 1.083955997 1.047057182 1.060858015 1.03299986 1.064164644 1.06968938 1.050574579 1.038122321 1.06321541 1.026457825 1.019650648 1.021634873 1.022854477 1.084303682 1.040410828 343955636 amyA Muricauda ruestringensis DSM 13258 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Muricauda;species:Muricauda ruestringensis; 0.856600739 0.916951133 0.882359808 0.873831732 0.943947301 0.930541225 0.861068905 0.86299203 0.879379909 0.903128802 0.841058825 0.893947417 0.874117884 0.891830917 0.941375769 0.950452618 0.945649077 0.970565972 40713179 mdlb Actinoplanes teichomyceticus Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes; 1.202619284 1.243358635 1.192826002 1.182504835 1.22019953 1.259415071 1.187529765 1.158215398 1.166881152 1.228576027 1.213526705 1.154404559 1.188109112 1.213358091 1.15985889 1.157775101 1.182001391 1.222352848 227112721 pme Pectobacterium carotovorum subsp. brasiliensis PBR1692 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium carotovorum; 0.794796617 0.845135877 87281229 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.996713856 0.994798275 0.966776431 1.035991128 0.963083334 1.021436362 0.981221282 1.011092615 0.98822992 0.973110559 0.943497944 1.004277801 0.93536208 0.971168435 0.975942305 0.952890789 0.995080314 0.977986646 384918247 SoxB Citreicella sp. 357 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Citreicella; 0.98654677 0.996698381 0.890382736 0.887903396 0.933363082 0.919569973 0.878430926 0.866336462 0.908916325 0.895618787 0.848371585 0.905915395 0.86088342 0.885181219 0.818859718 0.844484044 0.912634719 0.940999874 133912960 nirb Saccharopolyspora erythraea NRRL 2338 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 0.894490082 0.79443114 0.889247424 0.913197254 0.875500911 0.912329194 0.791601813 0.939789141 0.86262205 0.823213769 0.826483664 0.834879501 0.843022939 0.845960358 0.943765546 0.882475656 29830060 hbh Streptomyces avermitilis MA-4680 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 0.974638377 0.995829234 0.977612665 0.962495628 0.977531536 0.985016462 0.919255533 0.929964142 0.977585683 1.009392697 0.999888062 0.932679559 0.923305545 0.933429935 0.911848993 0.929671668 0.966780128 0.999588332 404496998 ben_bcla Geobacter metallireducens GS-15 virulence NA NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter metallireducens; 1.345948995 1.310087808 1.312130382 1.326032976 1.308258345 1.350364569 1.32126388 1.320321431 1.286938155 1.293673832 1.306202825 1.295222993 1.287031973 1.294626996 1.299285956 1.296635138 1.332060749 1.28603583 70731629 arylest Pseudomonas protegens Pf-5 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas protegens; 0.939384954 0.96090418 0.963931286 0.975288991 0.984559242 0.957034058 0.956210043 0.983228974 1.068935467 0.956533 0.930053175 0.944264694 0.961720365 0.899223677 0.94542536 0.943546699 0.921058054 0.906247955 148243562 urec Synechococcus sp. RCC307 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 0.955218815 0.91419015 0.943945165 0.989287937 0.946119057 0.911909259 0.946230699 0.968785544 0.952535043 0.88825024 0.961949618 0.97141728 0.923046202 0.925604315 0.936900665 0.970205727 0.969714884 0.900374761 115364090 ppx Stigmatella aurantiaca DW4/3-1 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 0.9627507 1.038261174 1.031147778 1.026003781 1.020581564 1.029613198 1.01477175 0.995388318 1.013474875 1.047044823 0.993293315 0.999162175 1.055296531 1.033125606 1.00904019 1.017918314 0.993069645 1.045814445 89512486 nifh uncultured nitrogen-fixing bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.96151069 0.884719234 0.884608915 0.914123545 0.887729986 0.875509047 0.909995682 0.893069984 0.894642952 0.896883686 0.917048058 0.870212244 0.863649856 0.844777843 0.824419827 0.885534093 0.859930036 255943919 phospholipase_D_fungi Penicillium chrysogenum Wisconsin 54-1255 Carbon Cycling Carbon degradation Phospholipids superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 0.956079641 0.931708228 0.926596657 0.979378813 0.935786322 0.945713453 0.934052693 0.922605651 0.954888238 0.910795062 0.901815025 0.929031233 0.874488639 0.926410754 0.861582991 0.914406221 0.963899028 0.986416942 146337807 ben_bcla Bradyrhizobium sp. ORS 278 virulence NA NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 1.189914782 1.160720347 1.131795453 1.151895674 1.132985846 1.176196407 1.094464241 1.13510105 1.145971594 1.14740363 1.127215532 1.139043983 1.099090262 1.120549339 1.109267895 1.123640163 1.16601042 1.159837499 260464249 glucoamylase Mesorhizobium opportunistum WSM2075 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium opportunistum; 0.931299462 0.980522658 0.95302348 0.966889122 0.915859224 0.916128357 0.923804496 0.907713622 0.940739424 0.922173061 0.902011385 0.950847449 0.890965666 0.885203569 0.86492141 0.891064131 0.951426582 0.929928047 401773948 exaa(moxf) Methylocystis sp. SC2 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylocystaceae;genus:Methylocystis; 0.982678821 0.949827454 0.969496583 1.002287885 0.971553438 0.966998836 0.964101118 0.966428211 1.088447942 0.984473276 0.963138143 0.998712832 0.905387071 0.936257831 0.900995911 0.931663837 0.959542317 0.94981642 85694315 ppx Idiomarina baltica OS145 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Idiomarinaceae;genus:Idiomarina;species:Idiomarina baltica; 1.098936621 1.022268461 1.074188823 1.167866724 1.092484345 1.164480382 1.095283049 1.109664958 1.123267937 1.116012876 1.086838104 1.102725424 1.070443686 1.05369118 1.108231214 1.101082207 1.089839754 1.051347288 238750439 cellobiase Yersinia rohdei ATCC 43380 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia rohdei; 0.779459984 0.812278852 144899379 SoxA Magnetospirillum gryphiswaldense MSR-1 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum gryphiswaldense; 1.246290203 1.236451679 1.230359502 1.219261308 1.254933208 1.277435659 1.245606599 1.242368441 1.240783711 1.241581732 1.262441458 1.245726758 1.23386975 1.254040221 1.261848247 1.237510936 1.247207965 1.24568715 133913228 narg Saccharopolyspora erythraea NRRL 2338 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 0.940239698 1.084554577 0.982494294 0.949067441 0.974222687 0.989967376 0.962568546 0.930652152 0.936214345 0.973422335 0.99877909 0.955010059 0.925577689 0.939817584 0.972108513 0.950945014 0.966967596 0.954848284 398096225 pcag Polaromonas sp. CF318 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 1.50129102 1.457391167 1.44873652 1.4893145 1.463651686 1.467564418 1.448335898 1.477117392 1.47419199 1.453706803 1.471328699 1.488106454 1.426449257 1.391933995 1.409751644 1.425404108 1.480123775 1.417751186 167072912 amyA Rhizobium leguminosarum bv. trifolii WSM1325 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 1.115361663 1.128691294 1.143004321 1.149605096 1.11625301 1.141858694 1.128466529 1.129506247 1.085437586 1.117788201 1.139450586 1.133903646 1.110114631 1.075102277 1.07027019 1.094167421 1.163080685 1.126348515 324997870 catechol Pseudonocardia sp. P1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Pseudonocardia; 0.981951409 1.022922643 0.957010276 1.014510772 0.944665431 0.985548354 0.953867654 0.983048155 1.009419275 0.942041746 0.977525047 0.981642711 0.92560933 0.947859514 0.982652669 0.946473772 1.018418908 0.985731976 82698269 nifh uncultured methanogenic archaeon Nitrogen Nitrogen fixation NA superkingdom:Archaea;phylum:Euryarchaeota; 0.845483577 0.91740736 0.861013036 0.86660903 0.825644712 0.873703425 0.843803781 0.810654796 0.857426421 0.866170753 0.88296824 0.805613347 0.834975007 0.819207319 0.860077532 224589198 aoxb Sulfurihydrogenibium rodmanii Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Hydrogenothermaceae;genus:Sulfurihydrogenibium; 1.018253932 0.9917234 1.019440794 1.007117199 1.045686165 1.017294062 0.974658934 0.98666812 0.999322245 0.973457834 0.951061364 0.98373891 0.989339299 0.924415915 0.95396052 0.974014293 1.047753783 0.998895112 217978570 Sir Methylocella silvestris BL2 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Methylocella;species:Methylocella silvestris; 1.092250343 1.065985873 1.104660761 1.123344776 1.114063705 1.112061663 1.112293553 1.145219909 1.129632689 1.070419717 1.104360729 1.121733566 1.05044402 1.026482196 1.050683004 1.056756341 1.080625403 1.039000949 89087925 xyla Bacillus sp. NRRL B-14911 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 1.010319518 1.077363591 1.049899551 1.058848678 1.049037584 1.041791121 1.027308373 1.039820218 0.99016412 1.017754573 1.011344693 1.046442289 1.029271928 1.024443093 1.016079282 1.028382239 1.052127758 1.045916538 333991327 ppk Mycobacterium sp. JDM601 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 1.108281101 1.118272482 1.100386917 1.099975828 1.121644127 1.14263042 1.074448761 1.069149628 1.110588588 1.093216922 1.071570838 1.096948033 1.073726574 1.058266351 1.088960203 1.087717329 1.118931247 1.118237434 104780666 atza Pseudomonas entomophila L48 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas entomophila; 0.81517387 0.945946611 0.805574218 0.867886071 1.049337786 1.003015794 0.877847919 0.827555583 0.804022524 1.035087386 1.091719215 0.838181887 0.906976191 0.895328353 315447327 amyA Ruminococcus albus 7 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus;species:Ruminococcus albus; 0.940419414 0.861631129 0.846227298 0.897281253 0.863423611 0.831078364 0.890548148 0.834211159 0.983317328 0.863542948 0.87417584 0.872274654 0.822992441 0.823347569 0.847579842 391320812 mhpa Shigella flexneri 1235-66 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Shigella;species:Shigella flexneri; 1.173228565 1.173331902 1.24926517 1.179326387 1.136305963 1.177501717 1.146503533 1.151156347 1.172975457 1.226317367 1.165371462 1.139764169 1.132768044 1.130196103 1.093247242 1.145187153 1.179424505 1.156283675 374613583 cutinase Mycobacterium tusciae JS617 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tusciae; 0.936008254 0.968092668 0.933283826 0.966758368 0.971737734 0.935677119 0.923516898 0.949325633 0.911547648 0.918324333 0.92402587 0.950375496 0.930748203 0.925990664 0.956592086 0.907486265 0.953799846 0.972480318 343779079 arsc Stenotrophomonas maltophilia JV3 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 1.059279834 1.05316496 1.049323291 1.068313919 1.016681386 1.040261649 1.031790879 1.060685044 1.051946992 1.031286906 1.000686353 1.038810141 0.97143951 0.98166545 0.946239607 0.991860165 1.074563072 1.066323917 393217480 pcpe Fomitiporia mediterranea MF3/22 Organic Remediation Herbicides related compound NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Hymenochaetales;family:Hymenochaetaceae;genus:Fomitiporia;species:Fomitiporia mediterranea; 1.054479224 1.017204099 1.040369028 1.050219213 1.040960871 1.022356689 1.017466209 1.036919438 1.05667409 1.030364672 0.964609025 1.010244164 0.969593468 0.965195728 1.031448698 0.97381219 1.039381426 1.043177676 76580434 terc Burkholderia pseudomallei 1710b Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia pseudomallei; 1.582079278 1.550323401 1.542145298 1.5381775 1.52444502 1.588594774 1.515335146 1.535121667 1.525932392 1.522005106 1.53418715 1.505765815 1.507729662 1.488290919 1.480386256 1.506228734 1.559921649 1.519831164 254451238 dmdA Octadecabacter antarcticus 238 Sulfur DMSP degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter arcticus; 0.887886195 0.840305908 0.878759343 0.879425696 0.84362409 0.865030293 0.868595329 0.833283531 0.835483103 0.860463268 0.805464489 0.861985972 0.816170093 0.833772113 0.774226502 0.819287217 0.850433562 0.859074679 118033149 rubisco Burkholderia phymatum STM815 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 1.058431157 1.008139889 1.089918906 1.071805414 1.120629289 1.101161687 1.088333087 1.042398901 1.064400083 1.07552382 1.062860403 1.094838263 1.048079715 1.086273345 1.066160034 1.054870024 1.035638353 1.09747242 293369943 phenol_oxidase Trametes velutina Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Trametes; 0.81739686 0.783273856 0.817094071 0.843269974 0.775026075 0.830207866 0.861927715 0.845414057 0.82510143 0.81593915 0.829434271 93356798 poba Ralstonia metallidurans CH34 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 0.805910756 0.81705473 0.826201915 0.852151799 6624271 xylg Comamonas testosteroni Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas; 0.866171811 0.934622186 0.855722842 0.909124496 0.887617154 0.865870201 0.855542937 0.83842561 0.856278632 0.865262297 0.876958471 0.907527692 0.913068723 0.85238015 0.830936656 0.92433579 0.883468587 0.877634286 87281004 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.877593422 0.7933526 0.805864428 0.802245266 0.836069421 0.855056966 0.876510636 0.834802243 0.867718437 0.842221752 0.846327087 0.897395948 402499702 ben_bcla Rhodovulum sp. PH10 virulence NA NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodovulum; 0.996388137 1.03375038 0.944831325 0.99842948 1.008835577 1.023929278 0.958651957 0.981008152 0.972310425 0.992838279 0.930612693 1.0113233 0.983730285 0.981962059 0.97198076 0.989579124 1.002125973 1.037469859 116200744 tannase_Cdeg Chaetomium globosum CBS 148.51 Carbon Cycling Carbon degradation Tannins superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 1.22505176 1.220182938 1.197421166 1.174010968 1.192151682 1.164993529 1.158715826 1.193162536 1.119754872 1.170211257 1.229024062 1.164657519 1.172609841 1.151569816 1.144204432 1.145504648 1.125982991 1.198927851 198249413 tehb Acidithiobacillus ferrooxidans ATCC 53993 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus ferrooxidans; 0.995265651 1.039500861 1.007467246 1.02836068 1.002999895 1.031034059 0.984294212 0.993184145 1.022267748 0.985904934 0.976473597 1.007563063 0.996765221 0.974700399 0.974409312 0.974106104 1.035808334 1.005026161 302384189 amyA Brevundimonas subvibrioides ATCC 15264 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Brevundimonas;species:Brevundimonas subvibrioides; 1.131844354 1.208965562 1.157876776 1.171748401 1.155892497 1.219714337 1.162797955 1.155281273 1.166275131 1.174849168 1.141723023 1.158262366 1.130520936 1.123424738 1.156332166 1.182718828 1.199745659 1.176805091 328544100 chrr Polymorphum gilvum SL003B-26A1 Metal Homeostasis Chromium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;species:Polymorphum gilvum; 1.497746334 1.44793967 1.432415814 1.444779333 1.397531526 1.46044412 1.40081359 1.439258402 1.416688423 1.416937799 1.432512934 1.427282477 1.393398441 1.407002555 1.382106717 1.41409811 1.441593186 1.409456965 227467210 tktA Xanthobacter flavus Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter; 1.067309577 1.069028466 1.042873506 1.092696338 1.043859289 1.090467535 1.068438627 1.084274832 1.06706845 1.069700227 1.028247678 1.081163978 1.020681222 1.016881361 0.982678561 1.020432621 1.066842364 1.034880211 357401828 amyA Streptomyces cattleya NRRL 8057 = DSM 46488 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces cattleya; 1.025641259 0.957538151 0.998221204 0.988571388 0.963534836 0.977004139 0.939989262 0.981339691 0.993405939 0.953606085 0.9777831 1.002390469 0.992178363 0.944859409 0.967743797 0.969395421 1.01356466 1.016087058 353209659 cysJ Hyphomicrobium denitrificans 1NES1 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium;species:Hyphomicrobium denitrificans; 1.268100879 1.249627916 1.237086412 1.271570267 1.251925399 1.27579639 1.253732412 1.263405315 1.247180381 1.215945548 1.239183702 1.239694881 1.227603774 1.179476863 1.201560839 1.21779643 1.259984033 1.21777256 343801859 tktA Thiocapsa marina 5811 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiocapsa;species:Thiocapsa marina; 0.97845409 1.052946949 0.953088118 0.995976804 0.971499584 0.977946286 0.956565425 0.994960814 1.014132866 1.000230296 0.923712835 0.967604411 0.89788844 0.952656972 0.823200129 0.91552402 1.029341482 1.055182209 357009927 Sir Paenibacillus elgii B69 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus elgii; 1.048202833 0.994703106 1.034095611 1.006618219 0.993554948 0.983076106 0.991512605 1.042235241 1.019432568 0.982138559 1.009636582 0.980947052 0.971444905 0.936599271 0.911080319 0.966855445 0.991494959 1.01748471 375080576 rgl Paenibacillus sp. Aloe-11 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 0.883888476 0.858498724 0.87661138 0.873335826 0.810656021 0.855769528 0.875152826 0.886077001 0.877744399 0.847536156 0.837487366 0.827357654 0.844539426 0.843447555 0.84160677 0.877443421 0.867786096 332592251 fthfs uncultured bacterium Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria; 0.887652647 0.899719753 0.87362514 0.891287497 0.915547971 0.878967858 0.863972028 0.886290896 0.844033196 0.897218324 0.863416422 0.841923586 0.876163766 0.800006338 0.875829071 0.832685791 0.79470384 0.891594117 264680665 fosa Comamonas testosteroni CNB-2 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 0.795398301 0.978158871 0.786168703 0.813247631 0.908016146 0.92560856 0.786635942 0.933790749 1.018421578 0.943815206 0.844674591 1.029284789 0.975481763 0.877860358 3668179 mnp Pleurotus ostreatus Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Pleurotaceae;genus:Pleurotus; 1.074342022 0.987199113 1.049323706 0.959338942 0.987769613 0.988310754 0.967961389 0.958076681 0.945980098 0.962533121 0.991091944 0.966512644 0.928339651 0.904049972 0.99023909 0.901069036 1.021449704 1.023108038 168262769 terc Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 0.941579843 0.966435976 0.979206714 0.985917979 0.955599028 0.94436907 0.985791861 0.944999098 0.924372463 0.944658028 0.981358194 0.951171962 0.926993125 0.89238254 0.882196361 0.88733006 0.90085385 0.886967685 145305110 chitinase Salinispora tropica CNB-440 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora tropica; 1.253434512 1.249191542 1.199386421 1.291826148 1.248686578 1.205374313 1.249501878 1.257453423 1.257750411 1.192831643 1.192678018 1.260395537 1.228414848 1.188289233 1.205289412 1.281854198 1.216858366 1.192366935 214031653 alkb Ruegeria sp. R11 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 1.038280277 1.024814867 0.960561343 0.929832776 1.050624592 0.957005536 0.980926026 0.937537184 0.956107269 0.956242978 1.126717989 1.024141678 0.986603077 0.900130482 0.898822118 0.963016264 1.043061501 0.957755274 119538354 badh Nocardioides sp. JS614 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 0.987755726 1.017783675 0.984004041 1.007139731 0.976534218 0.996688042 0.960679977 0.952104597 0.97185198 0.962134173 1.015926644 0.969158938 0.969542123 0.940752604 0.923728855 0.980148877 1.000802592 1.004159844 222147231 phn Agrobacterium vitis S4 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium vitis; 0.764821513 0.815332849 0.795336528 0.80204094 0.84138376 0.805065481 61743606 mcra Methanosaeta harundinacea Carbon Cycling Methane Methanogenesis superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosaetaceae;genus:Methanosaeta; 0.887065574 0.946855927 0.856647982 0.942294472 0.928908227 0.909726775 0.869764993 0.898267214 0.901921659 0.890669061 0.860066309 0.926712213 0.833402623 0.973535815 0.85766855 0.904755947 0.958783055 27657619 chnc Arthrobacter sp. BP2 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 1.071919532 1.101639996 1.078034553 1.108733971 1.107073052 1.092200579 1.065867101 1.070234709 1.042596958 1.084991282 1.11281912 1.070899989 1.103426324 1.054747619 1.044183558 1.065012884 1.07456208 1.068373419 119962964 inulinase Arthrobacter aurescens TC1 Carbon Cycling Carbon degradation Inulin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter aurescens; 0.801493826 0.830094921 85703685 GAPDH_Calvin Roseovarius sp. 217 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 0.853014276 0.898617529 0.875366033 0.891572363 0.884880544 0.93992031 0.870099205 0.92892152 0.848929633 0.868669004 0.893538315 0.896042301 0.861402223 0.851558685 0.856750186 0.87176265 0.867520527 0.842191215 388584886 terc Microvirga sp. WSM3557 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Microvirga; 0.795716984 0.81602215 0.81634645 0.82231742 0.792653862 0.800137356 0.843096433 0.826138127 0.811121618 27377801 mdlc Bradyrhizobium japonicum USDA 110 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 1.330596531 1.292882981 1.294600858 1.302831705 1.284359211 1.329209032 1.299229261 1.319998551 1.293572036 1.272109642 1.291916343 1.291014448 1.285504913 1.247655182 1.254446537 1.28368872 1.321633167 1.281541284 299739072 endochitinase Coprinopsis cinerea okayama7#130 Carbon Cycling Carbon degradation Chitin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 0.991908709 0.946129 0.911011392 0.999586991 0.847421134 0.916204493 0.879190914 0.916334236 1.006516529 0.915471339 0.863688354 0.890170704 0.912673845 0.942763597 0.960528624 0.894350912 0.985503106 0.95162989 189209792 rgl Pyrenophora tritici-repentis Pt-1C-BFP Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 0.90793525 0.848460904 0.838982016 0.838664621 0.839833117 0.836499492 0.831498761 0.835776085 0.797381479 0.833025436 0.788401588 0.867080566 0.856258933 0.877649244 116197274 xylanase Chaetomium globosum CBS 148.51 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 0.822048356 0.841424215 0.869400802 0.791571074 0.826706966 0.844145398 0.880346323 0.825821716 0.808237195 0.903902239 330466945 mannanase Verrucosispora maris AB-18-032 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Verrucosispora;species:Verrucosispora maris; 1.165237025 1.12414375 1.138358797 1.14340622 1.154030421 1.120888225 1.13438976 1.141112254 1.174142353 1.157739553 1.149548696 1.167813903 1.101897535 1.071381303 1.079471489 1.107286479 1.176051172 1.139692898 374613845 cdh Mycobacterium tusciae JS617 Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tusciae; 0.911211355 0.902936759 0.859837725 0.912637592 0.8545936 0.831888598 0.909584467 0.900475927 0.896207943 0.852494549 0.885971373 0.821224645 0.870313029 0.829486665 0.906665506 0.893156516 19526735 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 0.80041033 0.797196052 0.808466711 0.818248241 213013104 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.818769618 0.804775028 378556245 cellobiase uncultured bacterium Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria; 0.788498211 0.878467797 0.840770327 0.824385863 0.835053913 0.849471394 0.834572582 0.772387623 0.874685182 0.852706231 0.845534079 0.844965357 0.875430957 0.889850144 0.820358342 0.871393968 82568644 badh Rhodococcus erythropolis Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 1.089673784 0.861182378 0.895567236 0.820442238 0.787260602 0.818800977 0.800961376 0.835361767 0.920215064 192290053 trze Rhodopseudomonas palustris TIE-1 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 1.145968446 1.099484626 1.126640498 1.127292047 1.107926675 1.127540556 1.133204026 1.137019903 1.116406295 1.099995967 1.13824129 1.136080394 1.054062262 1.066870802 1.054283202 1.089057559 1.133104954 1.078303732 89070651 arsc Oceanicola granulosus HTCC2516 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola granulosus; 0.850357973 0.832425403 0.868379969 0.861349645 0.792984309 0.844921155 0.830141091 0.85128856 0.838135357 51491440 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.126889092 1.096701741 1.107047755 1.0676254 1.057334105 1.086539482 1.04917263 1.0669841 1.070833556 1.073301263 1.088656414 1.061204646 1.064422756 1.081586304 1.037346858 1.083070621 1.068085188 1.068432093 147920067 nifh uncultured methanogenic archaeon RC-I Nitrogen Nitrogen fixation NA superkingdom:Archaea;phylum:Euryarchaeota; 0.912449132 1.036674432 0.923517303 0.963250178 1.033903078 1.048814689 0.983034281 0.965972852 0.950809391 1.058224157 1.042624397 1.009830627 1.001349509 0.96885567 0.936981594 0.997405674 0.95779658 1.022730042 373548996 mer Mycobacterium tusciae JS617 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tusciae; 0.894254096 0.859717374 0.853028719 0.860342379 0.864776575 0.870899357 0.875288788 0.922696192 0.88525958 0.863468784 0.831847757 0.861411731 0.84923906 0.925608167 0.824204948 0.899026664 0.897440677 1256708 hcab Pseudomonas fluorescens Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 1.490406508 1.249288307 1.220499988 1.23983359 1.211286964 1.144170704 1.154481345 1.370620947 1.276272165 1.117126699 1.09990621 1.357185664 1.168980328 1.121053638 1.122098309 1.229243219 1.180850797 1.154620452 262081082 amyA Haliangium ochraceum DSM 14365 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Kofleriaceae;genus:Haliangium;species:Haliangium ochraceum; 1.256584371 1.246216494 1.242639391 1.248757049 1.183262738 1.176072816 1.206919273 1.217952949 1.240291059 1.218266065 1.201704596 1.232376145 1.169962698 1.188457501 1.170091211 1.17838572 1.224743844 1.205107033 320334404 amyA Deinococcus maricopensis DSM 21211 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus maricopensis; 0.956966218 0.972017812 1.008279081 0.955725257 0.992235048 1.051592759 1.00017164 0.97882341 0.972287903 0.978074374 1.016863789 0.973913738 0.941501029 0.913944277 0.919353968 0.935063947 0.949546372 0.981373022 373100069 mdlc Cupriavidus basilensis OR16 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus basilensis; 1.056207874 1.09302495 1.082261551 1.050929402 1.062878068 1.092722393 1.058373953 1.068889744 1.043583274 1.060835066 1.094276039 1.069789261 1.050512564 1.044978145 1.050106254 1.049663312 1.08761034 1.078476467 85671675 nosz Roseovarius sp. 217 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 1.18586434 1.198982961 1.168257802 1.22609175 1.209631317 1.217542724 1.203746791 1.208322595 1.181628316 1.189857484 1.186365343 1.207453304 1.222320189 1.176123325 1.17712764 1.198826526 1.220867779 1.168691231 319784883 cmci Mesorhizobium ciceri biovar biserrulae WSM1271 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium ciceri; 0.787907829 0.818105659 112463845 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.802051449 0.800476759 0.80456606 0.80951248 0.830075562 0.792026073 0.79192664 302306706 protease_serine_fungi Ashbya gossypii ATCC 10895 Carbon Cycling Carbon degradation protein superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Saccharomycetaceae;genus:Eremothecium;species:Eremothecium gossypii; 0.786537577 0.807325555 317970297 GAPDH_Calvin Synechococcus sp. CB0205 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 0.847676339 0.840592957 0.841108309 0.792656725 0.822986043 0.819185713 0.835906643 323374932 pectinase (pectate_lyase) Acidovorax avenae subsp. avenae ATCC 19860 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax avenae; 1.394582404 1.390285287 1.371557592 1.380867274 1.356600882 1.4118946 1.336134576 1.385585673 1.339254554 1.357965139 1.353805323 1.35144815 1.325288377 1.36354859 1.342280033 1.365317029 1.378655113 1.379835527 332377156 fthfs uncultured bacterium Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria; 1.25465156 1.242181892 1.214895708 1.250157597 1.202066268 1.215464704 1.181417853 1.232754126 1.232642148 1.217414104 1.224145972 1.239704801 1.180195487 1.173550374 1.171533321 1.194148598 1.237219969 1.209720274 282570001 bphF1 Subdoligranulum variabile DSM 15176 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Subdoligranulum;species:Subdoligranulum variabile; 0.777783257 0.836842142 0.835984479 0.785165964 0.835606607 0.81417301 27355530 mdlc Bradyrhizobium japonicum USDA 110 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 1.291226427 1.297624106 1.261441697 1.251723472 1.250799795 1.311569017 1.241344221 1.250360023 1.272927478 1.269383943 1.252032994 1.25905833 1.224529179 1.230120185 1.177295069 1.229883071 1.251350361 1.26903827 45386151 narg unidentified bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.836699974 0.791805147 0.853150308 0.831484752 0.791580133 0.822190166 0.823367417 0.874719272 291347104 amyA Streptomyces roseosporus NRRL 15998 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces filamentosus; 1.234467638 1.184947146 1.209626802 1.197543354 1.129347472 1.197949517 1.085722754 1.158898303 1.199826625 1.158550069 1.173637524 1.172002891 1.156669041 1.157585383 1.107818494 1.140346884 1.217146252 1.168885391 87311919 amyA Blastopirellula marina DSM 3645 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Blastopirellula;species:Blastopirellula marina; 1.022973454 1.048821262 1.020980836 1.074262037 1.053591718 1.070990016 1.025330847 1.002948214 1.009007795 1.053825646 0.993848149 1.043926102 1.031903634 1.000602799 1.020906462 1.035618574 1.051321551 1.019006087 409395438 quinoline Pseudomonas sp. Chol1 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 1.09549622 1.057072402 1.043377342 1.056556202 1.033692315 1.037071569 1.009493037 1.045032485 1.040737266 1.044005525 1.020802635 1.038725079 0.998503003 1.004501294 0.941689655 0.985014624 1.05911477 1.065324193 400191709 arylest Morganella morganii subsp. morganii KT Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Morganella;species:Morganella morganii; 0.766755697 0.830097455 0.995614403 0.804890559 0.790839835 0.814560908 0.825827023 0.828050562 111073803 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 0.810490704 0.792251174 0.860718574 0.774404643 0.863279237 0.886495683 0.805293031 0.832586174 0.931848113 0.893512744 0.902970265 0.831366182 0.816876229 0.822976971 0.830115845 256371793 ppx Acidimicrobium ferrooxidans DSM 10331 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Acidimicrobiales;family:Acidimicrobiaceae;genus:Acidimicrobium;species:Acidimicrobium ferrooxidans; 1.114454936 1.086477421 1.071582324 1.105047337 1.046933767 1.114608987 1.056804113 1.076124347 1.105154875 1.104740487 1.064327267 1.077785365 1.059998517 1.057378046 1.081751644 1.049944483 1.096895574 1.091134449 388486330 lmo Modestobacter marinus Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Geodermatophilaceae;genus:Modestobacter; 0.919120172 0.937910163 0.893694098 0.940951283 0.930892265 0.933563174 0.871945993 0.912701819 0.941623172 0.967891358 0.913856009 0.903617811 0.937550816 0.90704046 0.900409815 0.900851634 0.921791609 0.954497841 162707951 catechol uncultured bacterium Organic Remediation Aromatics Other aromatics superkingdom:Bacteria; 0.839107615 0.777721884 0.845919762 1.150864977 284390178 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.001036188 0.972072042 0.994061843 0.981928624 1.004303847 0.979667467 0.89342445 0.976701367 0.945536328 0.931087236 0.91529888 0.920481037 0.937969254 0.933969522 0.919415226 0.931896711 1.002079401 1.008940439 371951383 CsoS1_CcmK Singulisphaera acidiphila DSM 18658 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Singulisphaera;species:Singulisphaera acidiphila; 1.180670093 1.191931628 1.165726632 1.151014529 1.137708035 1.176893864 1.135847369 1.170790635 1.162683998 1.169736829 1.169680344 1.180128642 1.133602285 1.138451875 1.114487949 1.176037845 1.163442073 1.178513962 297148264 cysJ Streptomyces sviceus ATCC 29083 Sulfur Reduction NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 1.28765367 1.271876798 1.245126252 1.262246221 1.259103863 1.283858751 1.253532074 1.248029395 1.254621229 1.237891489 1.275158833 1.240443182 1.233432536 1.205069515 1.183104172 1.220837453 1.304360616 1.240039958 119383921 catechol Paracoccus denitrificans PD1222 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 0.805984041 0.857440728 0.866201364 0.834144921 0.834015599 0.891905523 0.846680903 0.867052165 0.816995258 0.831173715 0.863238206 339478367 cellobiase Bifidobacterium breve UCC2003 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium breve; 1.004611811 1.00112298 1.018440266 0.998480356 1.037078512 1.035549403 1.015665482 1.029295051 1.010149007 1.018028349 1.032092726 1.01051527 0.982188646 0.965257007 0.953541572 0.935852999 1.004712764 1.01446536 239610523 phenol_oxidase Ajellomyces dermatitidis ER-3 Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces dermatitidis; 0.841867069 0.874548509 0.847057931 0.827496586 0.788388158 0.864460838 0.882497831 0.849060305 0.800997902 0.788608865 0.84422289 0.802398276 88794859 pula Alteromonas macleodii 'Deep ecotype' Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alteromonas;species:Alteromonas macleodii; 1.075305497 1.068827865 1.011260222 1.119168249 1.07208202 1.091075684 1.076785195 1.07538463 1.064196337 1.069840958 1.041582218 1.039747931 1.056233047 1.0646674 1.004664611 1.050017854 1.083552416 1.06594053 390565727 amyA bacterium Lb Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Chloroflexi;class:Thermomicrobia;order:Sphaerobacterales;family:Sphaerobacteraceae;genus:Nitrolancetus;species:Nitrolancetus hollandicus; 1.01569742 0.99515744 0.960687115 0.958760677 0.963000133 0.990716832 0.953946929 0.936596372 0.978292073 0.966615534 0.955311887 0.964770232 0.958772103 0.952139789 0.927133543 0.955746331 1.052309465 0.979673021 319743630 tktA Lautropia mirabilis ATCC 51599 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Lautropia;species:Lautropia mirabilis; 0.840156083 0.880239955 0.836536124 0.891193037 0.823195223 0.849272388 0.820423471 0.826137677 0.822621409 0.813023918 0.862275651 0.861120964 0.846087582 0.888632797 0.897940803 186476980 B_lactamase_A Burkholderia phymatum STM815 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 0.763747752 0.798130051 0.808149479 0.808165469 0.800363573 0.801172935 0.796336008 0.81029552 0.815456224 0.8329081 291354134 urec Streptomyces albus J1074 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces albus; 1.0337589 1.008860371 1.03990582 1.021236688 0.986307075 1.021572008 0.967556417 1.008872643 0.999614567 0.984770424 0.994536714 1.039925016 0.988583732 1.016527905 1.010327151 1.040946428 1.027804945 0.99713421 209809031 chitinase Aliivibrio salmonicida LFI1238 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Aliivibrio;species:Aliivibrio salmonicida; 1.043911929 1.036055638 1.021480384 1.033022306 1.010420679 1.053846627 0.985437696 1.020764181 0.997940435 1.013731493 1.025220146 1.024795413 1.002285218 0.983933845 0.968294623 1.01796278 1.033461244 1.033629847 343927596 nirb Gordonia alkanivorans NBRC 16433 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia alkanivorans; 1.149947801 1.124245208 1.153896917 1.092226878 1.115378563 1.125898604 1.102888449 1.138033058 1.135206543 1.093685265 1.126529366 1.116722657 1.124924258 1.086877923 1.146389299 1.092411752 1.140268037 1.12418674 4808515 pcag Pseudomonas putida Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.836940672 0.802206848 0.87876922 0.833158582 0.889246027 0.925800906 0.900560889 0.869224367 0.857074885 0.872096459 0.8939984 0.82555419 0.803603038 0.799665346 0.895560985 299795986 glucoamylase Amycolatopsis mediterranei U32 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 1.009406434 1.014192654 0.967172014 0.974845874 1.012938688 1.005230484 0.981478671 0.992967928 0.97439493 0.973628766 0.967743729 1.018206487 1.010725413 0.972510065 0.99622218 1.025586403 1.013171361 1.014946401 320007776 cellobiase Streptomyces flavogriseus ATCC 33331 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces flavogriseus; 0.807490977 0.803203298 0.849786481 0.8374304 0.826584307 0.806234132 0.77868244 0.851695118 0.819130976 0.838066974 309251202 ppx Bifidobacterium bifidum S17 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium bifidum; 0.80945593 0.851612133 0.805056957 0.819369967 225387000 atza Clostridium asparagiforme DSM 15981 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium asparagiforme; 1.192301719 1.184480559 1.171430036 1.16327639 1.148045618 1.182177941 1.140402932 1.150816722 1.167231538 1.155811163 1.13970126 1.174104406 1.142755296 1.133707043 1.124789438 1.153639913 1.175130276 1.157339509 89512924 nifh uncultured nitrogen-fixing bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.91205319 0.929442808 0.80528382 0.966379664 0.898669239 0.895778922 0.883354674 0.872298827 0.837170785 0.915993505 0.872129247 0.918184649 0.850839599 0.83184611 0.932437632 0.810483691 0.890193873 2982669 gdh Thermococcus kodakarensis KOD1 Nitrogen Ammonification NA superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Thermococcus;species:Thermococcus kodakarensis; 0.897555762 0.899712419 0.861359528 0.917474612 0.897703144 0.933917035 0.915275722 0.877756069 0.876098663 0.878904384 0.85712596 0.904629313 0.902524191 0.877385617 0.854744478 0.868775064 0.894763955 0.888123355 283809389 terc Kribbella flavida DSM 17836 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Kribbella;species:Kribbella flavida; 0.784779971 0.791782924 307565334 acetylglucosaminidase Prevotella amnii CRIS 21A-A Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella amnii; 0.916393192 0.921396436 0.91081941 0.920232407 0.923578253 0.913739909 0.922471122 0.95751095 0.928506249 0.924292086 0.964608159 0.897666187 0.94438459 0.938017436 0.842580002 0.879152189 0.903411293 0.961332693 209401654 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.225907768 1.204652259 1.199799599 1.209969576 1.216384777 1.208695461 1.176831627 1.182857466 1.19999911 1.204492124 1.17209748 1.193826845 1.178154083 1.152272503 1.151338248 1.162009786 1.197518138 1.2037995 88699293 pgk Congregibacter litoralis KT71 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Congregibacter;species:Congregibacter litoralis; 1.042173112 0.98431759 0.945239684 1.05202927 1.00804981 1.043912674 1.016231017 0.972995664 0.992246932 1.026276653 1.024647784 1.014576231 0.993116769 1.012136673 1.001126556 0.991693389 1.01505379 0.97547683 254437324 pgk Octadecabacter antarcticus 307 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 1.050910775 1.016615005 1.029229817 1.015801533 1.038079868 1.054950022 1.031496278 1.00824725 1.017451636 1.032886299 1.108773739 1.011491193 1.009333578 0.988176343 1.052458775 0.945743413 0.98629628 1.05136453 13259303 mcra uncultured methanogen RS-ME32 Carbon Cycling Methane Methanogenesis superkingdom:Archaea;phylum:Euryarchaeota; 0.917430779 0.991624228 0.978675461 0.921253666 0.939166783 0.966896541 0.923138904 0.84418697 0.902725021 0.970208784 0.982489362 0.926005193 0.96033631 0.956320099 0.941045211 0.913558907 0.974435518 0.960907529 94471161 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.976131606 0.97422149 0.934437939 0.97160423 0.913140621 0.939927397 0.917557922 0.94019745 0.94615347 0.96787775 0.928456279 0.964780738 0.931178133 0.9053019 0.903680024 0.930153486 0.97315138 1.007526333 352100617 poba Halomonas sp. HAL1 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas; 1.054879789 1.060108896 1.068960576 1.049918048 1.038084186 1.054893593 1.008865014 1.03694024 1.018851336 1.010638821 1.012002981 1.041375372 0.981548163 0.965193473 0.961584124 0.998172318 1.089696872 1.020139954 333476788 proO Marinomonas posidonica IVIA-Po-181 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Marinomonas;species:Marinomonas posidonica; 0.98719605 1.004340895 0.999725987 1.016415503 0.984659765 0.978533664 0.970301976 0.996834181 0.995668983 0.971333838 0.978651781 1.019468364 0.969219287 0.912640549 0.929451443 0.997830168 0.997147892 0.943498589 359820071 xylj Mycobacterium rhodesiae NBB3 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 1.121001088 1.149458496 1.064201447 1.09941185 1.066591643 1.065700345 1.134538113 1.090342124 1.116344914 1.025994796 1.169086468 1.153644822 1.06529792 0.978961565 0.987461706 1.204631718 1.153497323 1.115575437 75676336 ppx Nitrobacter winogradskyi Nb-255 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter winogradskyi; 0.915005244 0.886787031 0.810194972 0.906614316 0.842527217 0.80832782 0.887724508 0.918965943 0.902637951 0.883882353 0.852268661 0.882937537 0.82418267 0.852377747 0.813335581 0.888546148 0.890990942 163782521 sucD Hydrogenivirga sp. 128-5-R1-1 Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Aquificaceae;genus:Hydrogenivirga; 0.882744458 0.83213021 0.802811838 0.935894073 0.834640063 0.876028572 0.856975063 0.828070813 0.961742583 0.818770452 0.93296236 0.822431327 0.858727069 0.910247901 345125349 hao endosymbiont of Tevnia jerichonana (vent Tica) Nitrogen Nitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;species:endosymbiont of Tevnia jerichonana; 0.853931507 0.818914646 0.84143558 0.829296789 0.857796873 0.786447335 0.834439935 0.817325128 0.80984409 0.868842341 78093540 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.865868885 0.924902486 0.884218496 0.847311303 0.918817176 0.84578019 0.830004926 0.818108961 0.943813452 0.862416139 0.895204915 0.854125993 0.870019369 0.869904413 0.857562768 0.910708713 158331393 bphc Azorhizobium caulinodans ORS 571 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Azorhizobium;species:Azorhizobium caulinodans; 1.378403966 1.350954466 1.336271695 1.353935976 1.349747015 1.383193923 1.326564683 1.359875102 1.338745225 1.312309561 1.353657086 1.339899865 1.333307864 1.306023661 1.323105737 1.329694822 1.4007977 1.326615562 326207947 terc Novosphingobium nitrogenifigens DSM 19370 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium nitrogenifigens; 0.82132719 0.869774527 0.801183374 0.858553249 0.824942077 0.850836241 0.843387583 0.842193167 0.818508667 0.873852507 0.85016376 0.797458313 0.835481961 0.891625726 3378445 xylj Novosphingobium aromaticivorans Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 1.184299079 1.136572533 1.177934367 1.162292181 1.125794769 1.156679638 1.146066421 1.183024542 1.150701452 1.138465634 1.159186639 1.162038408 1.143448135 1.144920238 1.135253428 1.172976393 1.15826297 1.142371069 407321053 pcag Sinorhizobium meliloti Rm41 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium meliloti; 1.075781701 1.068737434 1.048434601 1.024876572 1.014184875 1.04355783 0.954208855 1.017914204 1.037111353 1.038858961 1.010501729 1.026161817 1.022400238 1.014415195 0.982413312 1.021587274 1.046252 1.043948417 399540125 linb Amycolatopsis mediterranei S699 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 1.194251749 1.156667008 1.144186566 1.16630999 1.130132723 1.168578809 1.136381335 1.14854875 1.161047813 1.174244606 1.153512805 1.181571351 1.1129058 1.147477819 1.127928122 1.13073051 1.169242983 1.182610194 218667357 atzd Acidithiobacillus ferrooxidans ATCC 23270 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus ferrooxidans; 0.944886126 0.912933642 0.925743731 0.960686192 0.890191346 0.918711275 0.911311828 0.898105018 0.947671021 0.906605307 0.908406261 0.919599806 0.879315522 0.93985264 0.864334101 0.945683013 0.991498454 0.920584079 327300301 chnc Trichophyton rubrum CBS 118892 Organic Remediation Other Hydrocarbons NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Arthrodermataceae;genus:Trichophyton;species:Trichophyton rubrum; 0.919444728 0.926471699 0.901330968 0.939413828 0.841558002 1.0800027 0.84378755 0.89317852 0.899269071 0.950627289 0.898664084 0.906920937 0.828888842 0.928487963 0.824238061 0.913317073 0.920582828 0.956329686 3157598 nifh unidentified nitrogen-fixing bacteria Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.905096352 0.860415482 0.841607892 0.873553216 0.80864675 0.824630554 0.825739502 0.835592891 0.876475631 0.848445954 0.822169852 0.870680891 0.800490189 0.843981851 0.882275162 0.840551014 0.817961694 194474803 arra uncultured bacterium Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 0.770230466 0.841385418 0.768381584 0.831704081 334894510 amyA Halorhabdus tiamatea SARL4B Carbon Cycling Carbon degradation Starch superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halorhabdus;species:Halorhabdus tiamatea; 0.844489518 0.857836678 298554858 amyA Prochlorococcus marinus str. MIT 9313 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Cyanobacteria;order:Prochlorales;family:Prochlorococcaceae;genus:Prochlorococcus;species:Prochlorococcus marinus; 0.96693729 0.958827815 0.96573809 0.911222561 0.887704581 0.934650398 0.87221777 0.91309869 0.927418339 0.971448042 0.904597756 0.943252237 0.891128486 0.896520884 0.895346142 0.892207965 0.944511532 0.975217366 139478539 mer uncultured soil bacterium Metal Homeostasis Mercury Detoxification superkingdom:Bacteria; 1.024135833 1.040582016 0.948454676 1.001580161 0.972050282 0.994333736 0.98319775 0.974434177 0.957338183 0.961484278 0.940781918 0.995450074 0.91330552 0.944591028 0.849988515 0.927433332 1.010482254 1.01825816 392217610 xylj Mycobacterium abscessus 3A-0731 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium abscessus; 1.436976816 1.41583438 1.412053062 1.424925639 1.419156135 1.446177017 1.415990564 1.43866415 1.398814837 1.377093104 1.403603848 1.426815302 1.390698756 1.371068258 1.423613696 1.414380088 1.455714772 1.387750618 115402963 phospholipase_D_fungi Aspergillus terreus NIH2624 Carbon Cycling Carbon degradation Phospholipids superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 1.134008281 1.100520195 1.136056171 1.105086619 1.068327246 1.099140435 1.035874076 1.095367206 1.12375342 1.102966847 1.093462804 1.067356672 1.094110636 1.08491646 1.053309298 1.089775536 1.107417214 1.104878893 289705224 amyA Micrococcus luteus SK58 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Micrococcus;species:Micrococcus luteus; 1.282328851 1.285841268 1.280688528 1.248520141 1.269520049 1.306087664 1.243999837 1.249068163 1.228503591 1.281555701 1.256849113 1.259803359 1.242123971 1.263476596 1.22403435 1.241605689 1.253090077 1.272752465 262195882 amyA Haliangium ochraceum DSM 14365 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Haliangiaceae;genus:Haliangium;species:Haliangium ochraceum; 1.298744871 1.292619903 1.293942219 1.298446087 1.255189226 1.3362057 1.225423485 1.234730969 1.279971578 1.242794164 1.215925392 1.230220301 1.222207257 1.215161911 1.212335628 1.229260869 1.339311073 1.270265293 365540913 arsc Vibrio ordalii ATCC 33509 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio ordalii; 0.775559881 0.860949165 45386149 narg unidentified bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.009076851 0.982000319 0.929003703 0.964482365 0.93497173 1.014533017 0.901294159 0.924776916 0.995154602 0.966724622 0.956590528 0.970540244 0.967175846 0.963932652 0.928135321 0.967748716 0.983855364 0.958358941 37703775 phenol_oxidase Coprinopsis cinerea Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis; 0.901453144 0.912832888 0.824584163 0.945879732 0.853695879 0.857110842 0.865576591 0.859890878 0.92469336 0.830838607 0.842473754 0.88622631 0.879228971 0.848467352 0.876333323 0.868961269 0.857923483 91776827 b_lactamase Methylobacillus flagellatus KT Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Methylophilales;family:Methylophilaceae;genus:Methylobacillus;species:Methylobacillus flagellatus; 0.836055229 0.80992641 0.839787719 0.827264122 0.830483566 163840455 fthfs Renibacterium salmoninarum ATCC 33209 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Renibacterium;species:Renibacterium salmoninarum; 1.048914936 1.070873716 1.060210166 1.066679964 1.062597996 1.084391141 1.071698568 1.078896761 1.070705944 1.02448266 1.043513211 1.053803801 1.016774315 0.9864115 0.995672271 0.998410517 1.071931157 1.045664214 157145274 amyA Citrobacter koseri ATCC BAA-895 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter koseri; 0.833084466 0.793056722 0.847475509 0.845896986 0.830277202 0.801703382 0.847544653 0.880949443 0.828308175 0.840754072 0.806243976 0.844482309 0.800538295 0.854583508 0.841974167 309394190 chitinase Stigmatella aurantiaca DW4/3-1 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 1.19722527 1.142055089 1.153529826 1.184511104 1.142381256 1.167852501 1.142535657 1.178074792 1.134820967 1.143977548 1.146861143 1.169620035 1.14351631 1.130169675 1.145905545 1.144837443 1.175821928 1.134962528 364505591 hzsa anammox bacterium enrichment culture clone BS6 Nitrogen Anammox NA superkingdom:Bacteria; 0.807633705 0.925530364 0.904583969 0.945230289 0.976373135 0.944593025 0.923415685 0.959026674 0.923982442 0.943580379 0.963660563 0.892772832 0.943926254 0.906098627 0.898030573 0.845510814 0.926277202 388264147 proO Hydrogenophaga sp. PBC Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Hydrogenophaga; 0.84240828 0.815500411 0.804640979 0.815766268 0.863970111 0.8020674 0.843859204 0.823602212 0.825657711 0.82291753 0.839641757 0.810043693 0.846042427 0.822452202 336099797 nosz Oligotropha carboxidovorans OM5 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Oligotropha;species:Oligotropha carboxidovorans; 0.931373228 0.949632765 0.910637054 0.969190904 0.925794623 0.941312087 0.90251031 0.916174045 0.933220144 0.958048418 0.918822674 0.955944606 0.874804633 0.913071695 0.867999838 0.888400482 0.97560963 0.958754575 338822115 poba Agrobacterium tumefaciens F2 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 1.004437644 1.006621589 0.890885952 0.991278919 0.950595244 0.983798403 0.923591484 0.9432738 0.973012807 0.964992897 0.957013154 0.973173069 0.925759241 0.94390076 0.965508414 0.956276429 1.009714667 0.936349371 187725987 ppx Ralstonia pickettii 12J Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 0.979631878 1.047424598 1.010176475 1.005689917 0.990139178 1.050550148 0.983645043 0.948314548 0.978698744 0.979124615 0.997812934 0.986350468 0.99938819 0.976384066 0.96235613 0.978634362 1.024947502 1.049137251 229784759 amyA Bifidobacterium angulatum DSM 20098 = JCM 7096 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium angulatum; 0.800729282 0.785981658 0.820209843 0.84236369 0.820268955 0.781030716 0.773988397 0.851466852 0.806594321 384147875 merb Amycolatopsis mediterranei S699 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 1.317243233 1.301145199 1.285425356 1.288560098 1.271630003 1.315857392 1.271291196 1.28861141 1.263718053 1.280840206 1.273143421 1.295206442 1.264272257 1.272865107 1.268680861 1.287292087 1.283170688 1.275676812 34483462 nifh Wolinella succinogenes Nitrogen Nitrogen fixation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Wolinella; 0.918380246 0.898735854 0.899146095 0.912307677 0.857607289 0.901080929 0.83229623 0.94548619 0.928897061 0.93001532 0.910329125 0.884662811 0.872838843 0.888772054 0.867394064 0.839750734 0.909442379 0.9705557 148499003 mult_ring_12DiOx Sphingomonas wittichii RW1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 1.381022802 1.345206916 1.332847028 1.361710423 1.326730583 1.369460002 1.325666889 1.35720149 1.341007324 1.329597503 1.305441696 1.345483823 1.290579817 1.298879036 1.295257379 1.318010181 1.370457842 1.324958178 148551013 tfth Sphingomonas wittichii RW1 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 0.822184774 0.799547769 0.831866892 0.771223955 0.821092758 240170524 limeh Mycobacterium kansasii ATCC 12478 Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium kansasii; 1.289396378 1.251764276 1.220414071 1.267917347 1.219803657 1.249368039 1.233524101 1.235527233 1.26480355 1.234766859 1.226296243 1.250596732 1.206059182 1.211274878 1.241512637 1.234817352 1.261408748 1.1842668 67532854 alkb Burkholderia vietnamiensis G4 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia vietnamiensis; 1.186718362 1.191053191 1.143963377 1.169487078 1.144427307 1.177815888 1.155842772 1.121672455 1.117487783 1.116698168 1.133492952 1.148102646 1.142990783 1.138233333 1.101824086 1.146911125 1.175693118 1.135362544 340247217 aps_apra uncultured bacterium Sulfur adenylylsulfate reductase NA superkingdom:Bacteria; 1.088241642 1.09809047 1.063893444 1.117976963 1.063779541 1.088273906 1.067543031 1.078680623 1.067969696 1.063685984 1.051111359 1.091733442 1.050726286 1.050925997 1.048915913 1.071565798 1.091202865 1.080578208 374623295 pgk Ectothiorhodospira sp. PHS-1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Ectothiorhodospira; 1.149347989 1.137411463 1.147587197 1.129729938 1.095635872 1.121952736 1.099317964 1.107525069 1.126949278 1.123190165 1.106810431 1.129437146 1.09429751 1.105393287 1.089384862 1.054295203 1.167741818 1.17097297 297203588 endoglucanase Streptomyces sviceus ATCC 29083 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 1.140195206 1.151595058 1.112212897 1.089448174 1.075235297 1.14031898 1.066313183 1.021580893 1.082240226 1.117703327 1.105146982 1.069431568 1.034750332 1.109521915 1.061860797 1.064760066 1.109666625 1.157594297 346644313 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.861083896 0.896518852 0.839486318 0.881925326 0.858618465 0.913126176 0.874394729 0.861310916 0.870089119 0.81951676 0.875902444 0.854998349 0.858707586 0.889248093 0.848061754 68135527 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 1.033540239 1.006505209 1.036176051 1.029754106 1.062937718 1.03903954 1.059528317 0.991316688 1.003443778 1.027829081 1.0928027 1.072743512 1.05600502 1.016310892 1.030413532 1.015827049 1.047184821 0.986199839 304561109 phytase Paenibacillus sp. CPH-11 Phosphorus Phytic acid hydrolysis NA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 0.826522912 0.860808978 0.838530267 0.89012099 0.885399151 0.87450473 0.862446999 0.877043825 0.859948957 0.908516541 0.899024634 0.904288078 0.881536254 0.905872325 0.847153322 0.878166908 0.819172404 0.871236501 315415686 xylanase Asticcacaulis excentricus CB 48 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis excentricus; 1.132079352 1.120412438 1.086426761 1.192423303 1.130570873 1.126839341 1.162091505 1.297752724 1.14815721 1.131669509 1.122238393 1.169095311 1.12308241 1.109855651 1.185030542 1.10827137 1.114604933 1.112218676 365092044 arsc Acidovorax sp. NO-1 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 0.884218337 0.859260734 0.860054191 0.821176033 0.793269249 0.828962907 0.819585744 359274989 IcfA Synechocystis sp. PCC 6803 substr. PCC-N Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechocystis;species:Synechocystis sp. PCC 6803; 1.046418365 1.044758786 1.065871152 1.094299901 1.039528198 1.078457931 1.061694755 1.083238937 1.037278034 1.059887347 1.040723957 1.069289384 1.078562787 1.019761218 1.016399483 0.979552745 1.085080106 1.022131258 2073550 cbaa Conidiobolus coronatus Organic Remediation Aromatics Chlorinated aromatics superkingdom:Eukaryota;kingdom:Fungi;order:Entomophthorales;family:Ancylistaceae;genus:Conidiobolus; 0.829277681 0.802455567 0.861668679 0.894086369 0.79591653 0.924950813 0.891633282 0.824837901 0.902492073 0.932553997 0.847601315 0.821481355 0.794789061 238724064 endoglucanase Yersinia frederiksenii ATCC 33641 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia frederiksenii; 0.751671123 0.815634455 148474786 napa uncultured bacterium Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria; 0.82416709 0.879713406 0.83999801 0.807721864 0.824730159 0.814866052 0.891288509 0.812998158 0.882190468 119956352 amyA Mycobacterium vanbaalenii PYR-1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 0.999158227 0.962477213 1.016191519 1.031815183 0.894642244 0.986649142 0.932517488 0.962693247 0.997232045 0.970835743 0.949097489 0.912409069 0.936847027 0.941199136 0.923962133 0.963036409 1.018440481 0.977801292 170141860 proO Burkholderia graminis C4D1M Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia graminis; 1.054208408 1.073100923 1.034644404 1.032144056 1.011917227 1.037038283 1.000715428 1.033993481 1.008806407 1.036939324 1.01544766 1.017778622 0.956339723 1.036221948 0.978358734 1.015684073 1.033482681 1.068146624 256690991 ara Halorhabdus utahensis DSM 12940 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halorhabdus;species:Halorhabdus utahensis; 0.961214617 1.011197738 0.974067377 0.95893753 0.92086275 0.961457527 0.882341325 0.94156246 0.963058841 0.939153168 0.950341339 0.949030192 0.922610402 0.964882011 0.869823847 0.922997978 0.955457491 0.985786005 262315123 TIM Acinetobacter johnsonii SH046 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter johnsonii; 0.84165768 0.791858867 0.912103762 0.87100586 0.81135878 0.816814734 0.829074323 0.836753017 0.854512624 0.833261613 0.853321472 0.831785803 0.852094946 0.92410227 0.85660609 78486207 GAPDH_Calvin Thiomicrospira crunogena XCL-2 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Thiomicrospira;species:Thiomicrospira crunogena; 0.95328866 0.940904962 0.963245463 1.020597214 0.979567532 0.924943642 0.937864405 0.949300013 0.966250927 0.921100462 0.950476924 1.016394043 0.893262307 0.910419824 0.872914669 0.930940126 0.951382142 0.919530424 108804401 poba Rubrobacter xylanophilus DSM 9941 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Rubrobacterales;family:Rubrobacteraceae;genus:Rubrobacter;species:Rubrobacter xylanophilus; 0.887160673 0.92164828 0.914216349 0.931351169 0.938165422 0.913464343 0.903362413 0.907461262 0.907446635 0.940594994 0.888447367 0.907367256 0.928288749 0.930394691 0.857975742 0.922102264 0.910474489 0.926608118 170943568 endochitinase Podospora anserina S mat+ Carbon Cycling Carbon degradation Chitin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Lasiosphaeriaceae;genus:Podospora;species:Podospora anserina; 0.84355825 0.792600172 0.871662596 0.882041257 0.826310457 0.875620279 0.800705806 0.821378963 0.867117559 0.8399618 0.809006268 149192283 TIM Vibrio shilonii AK1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio shilonii; 0.798676103 0.787732476 0.801388694 0.850634372 0.84223375 0.805052651 0.869303901 0.797345718 0.829409214 119497739 glucoamylase Neosartorya fischeri NRRL 181 Carbon Cycling Carbon degradation Starch superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 0.800626772 0.808299607 88702619 nosz uncultured soil bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.136468626 1.113004161 1.11103464 1.139834988 1.111821708 1.111740033 1.119650082 1.115918132 1.12553722 1.105434055 1.101176745 1.118266804 1.109811036 1.038533496 1.084680262 1.055005941 1.150815608 1.086514506 90324264 CsoS1_CcmK Photobacterium profundum 3TCK Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium profundum; 0.823941155 0.836662556 0.831762492 0.810068111 0.767989889 0.796678531 0.869715062 383332902 amyA Mycobacterium phlei RIVM601174 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium phlei; 0.951253082 0.874302695 0.938153286 0.898471909 0.909195417 0.872835799 0.865669698 0.891809845 0.863140034 0.897141673 0.88880936 0.836582294 0.943439525 0.928118514 397092066 chnb Chondromyces apiculatus DSM 436 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Chondromyces;species:Chondromyces apiculatus; 0.835930307 0.820851278 0.840107767 0.880515948 0.807094837 0.792546522 0.881137328 0.860082954 0.829909477 0.817232867 0.886501893 0.813531093 3157608 nifh unidentified nitrogen-fixing bacteria Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 1.272593919 1.228605396 1.244287305 1.28222722 1.270346828 1.229058414 1.226388057 1.289346779 1.252836224 1.224993926 1.274866927 1.298316724 1.214672012 1.197380612 1.211990217 1.204447303 1.241970465 1.180314483 178468707 vgb Streptomyces griseus subsp. griseus NBRC 13350 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseus; 1.177051886 1.133763243 1.180165186 1.182173175 1.178449071 1.161049536 1.173320301 1.188692887 1.189244167 1.137639258 1.158916749 1.171027081 1.174260373 1.104327369 1.156289476 1.152552792 1.17542174 1.148890003 299751882 phospholipase_B_fungi Coprinopsis cinerea okayama7#130 virulence degradation NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 0.862494936 0.894426217 0.919697491 0.999512085 0.937439387 0.893850107 0.948174436 0.964822532 0.93830764 0.936425287 0.931167208 0.971616777 0.903106532 0.886303606 0.863728893 0.914482681 0.904257225 0.858165827 336007235 amyA Lachnospiraceae bacterium 1_4_56FAA Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae; 0.920099166 0.956548595 0.918128676 0.913427296 0.930486987 0.93966741 0.887249567 0.907030388 0.912456028 0.896231256 0.926698461 0.942412266 0.888912459 0.908158829 0.885903095 0.916353618 0.876173997 0.888306167 312112995 ppx Rhodomicrobium vannielii ATCC 17100 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Rhodomicrobium;species:Rhodomicrobium vannielii; 0.975892012 0.99087219 0.957998235 0.986921405 0.92890771 1.005836196 0.97382452 0.956288649 0.972629332 0.957355321 0.946268204 0.948650577 0.960438681 0.948856333 0.972189231 0.948122117 0.992118552 1.024252433 295896014 chnb Mycobacterium parascrofulaceum ATCC BAA-614 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium parascrofulaceum; 0.831314327 0.815469477 0.846343876 0.798439435 0.840011088 0.806939095 0.808334592 0.831074914 302407105 exopolygalacturonase_fungi Verticillium albo-atrum VaMs.102 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticilium;species:Verticillium albo-atrum; 1.308436221 1.244792102 1.34631934 1.319173524 1.335015591 1.33658301 1.323795928 1.348371212 1.302830295 1.30294512 1.321333973 1.320869313 1.302819085 1.267461042 1.335661066 1.294916966 1.295497432 1.239340584 46392598 pmoa uncultured bacterium Carbon Cycling Methane Methane oxidation superkingdom:Bacteria; 0.830604961 0.858376447 0.854511092 0.870093899 0.844102318 0.854359387 0.852411766 0.857720164 0.853616906 0.842944039 0.880167187 0.839164557 0.854836619 0.936728323 0.862702997 0.889764335 0.833957251 223585864 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.98334492 0.919818734 0.895045983 0.949915934 0.919364446 0.972587075 0.949134093 0.936020807 0.948031902 0.934720748 0.925631615 0.941312694 0.966062491 0.879512988 0.838702872 0.885150962 0.976792018 0.904748688 308921479 terc Ralstonia sp. 5_7_47FAA Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 1.005065954 0.98532607 0.968916121 1.049149366 0.974317437 0.980967737 0.919315722 0.972917943 1.014052827 0.949404155 0.923896891 0.985989107 0.969661571 0.90802575 0.938567752 0.933709778 1.063505753 0.973801956 340247221 aps_apra uncultured bacterium Sulfur adenylylsulfate reductase NA superkingdom:Bacteria; 1.118528605 1.134571421 1.045144263 1.106915329 1.061571335 1.064132937 1.051189337 1.085798612 1.104195593 1.061728459 1.068848801 1.119838196 1.056531513 1.000202123 1.020547944 1.036203809 1.070392923 1.055950395 67921023 nitro Crocosphaera watsonii WH 8501 Organic Remediation Others NA superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Crocosphaera;species:Crocosphaera watsonii; 0.841963709 0.81603426 0.842820472 0.866448237 380772679 chnd Microbacterium laevaniformans OR221 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Microbacterium;species:Microbacterium laevaniformans; 0.991815599 1.02607591 0.992292848 1.028241046 0.993882635 1.017283139 0.992725833 1.015710402 1.00642778 0.954010955 0.965214996 1.001203353 0.91434525 0.974507616 0.873061708 0.957886144 0.95593539 0.962191991 148843592 mer Planctomyces maris DSM 8797 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Planctomyces;species:Planctomyces maris; 0.770150243 0.834045979 0.911428109 0.838602572 0.869463438 0.785816677 0.867560404 0.805168821 0.850427454 0.822813023 0.947893867 0.876123044 0.817571794 0.812868436 0.819824083 190890495 ppx Rhizobium etli CIAT 652 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 0.90927547 0.890609872 0.810515631 0.897908117 0.8458845 0.868892126 0.852586729 0.850727557 0.913693908 0.870895819 0.80850727 0.841632943 0.838988798 0.863150285 0.825757684 0.862537874 0.849682036 303280435 mg_chelatase Micromonas pusilla CCMP1545 Secondary metabolism Pigments Chlorophyll superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Mamiellophyceae;order:Mamiellales;genus:Micromonas;species:Micromonas pusilla; 1.075518716 1.042747904 1.082375322 1.088121434 1.101201255 1.114857252 1.112664833 1.106394977 1.106598094 1.121517072 1.143954736 1.112220242 1.069400475 1.078292091 1.079591937 1.069867135 1.084407752 1.05636175 147885988 phenol_oxidase uncultured bacterium Carbon Cycling Carbon degradation Lignin superkingdom:Bacteria; 0.783451143 0.808307035 0.831974819 0.819548907 0.897734666 0.8424 0.804601153 0.870214947 0.81860721 226356527 linb Deinococcus deserti VCD115 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus deserti; 1.223938269 1.197188526 1.174938609 1.189009591 1.185620474 1.220248099 1.162013839 1.157431929 1.15431578 1.171382637 1.176274692 1.183870377 1.170084189 1.180424625 1.168579894 1.184354974 1.195580609 1.171985894 259485117 protease_serine_fungi Aspergillus nidulans FGSC A4 Carbon Cycling Carbon degradation protein superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 1.0204974 1.034760459 1.021561589 1.006660853 1.035143185 1.016613565 1.00152271 0.981285465 1.011201481 1.02657613 1.074863211 1.021374285 0.98288629 0.999203573 0.935058194 1.007546596 1.013929395 1.040757938 40253036 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.212060739 1.150442295 1.181586059 1.218095902 1.103793723 1.171544903 1.135873337 1.17550304 1.191125006 1.129774024 1.146242664 1.158691643 1.135879705 1.11102136 1.115151049 1.145604381 1.189523096 1.128081437 298272808 amyA Bacteroides sp. D22 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides; 0.915852412 0.956969195 0.870746686 0.947281955 0.89851729 0.940365746 0.873446444 0.917803176 0.94298737 0.952320905 0.896166019 0.888099358 0.89074733 0.948410427 0.856639252 0.886982126 0.94698006 0.966046729 359406214 gdh Prevotella stercorea DSM 18206 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella stercorea; 1.157317469 1.16530808 1.12267585 1.174342892 1.129823555 1.173045891 1.106017918 1.110502415 1.128468294 1.113773931 1.098994193 1.163343018 1.135606351 1.102906784 1.1408775 1.114227999 1.16395589 1.108550113 110831199 vana Verminephrobacter eiseniae EF01-2 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 1.127045325 1.163048048 1.074851858 1.112624814 1.051048355 1.121450542 1.046647852 1.104918658 1.106808318 1.113222116 1.062185995 1.103114314 1.026501154 1.0831654 1.019917074 1.080680894 1.108265212 1.160019025 302683064 phospholipase_C_fungi Schizophyllum commune H4-8 Carbon Cycling Carbon degradation Phospholipids superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 0.854360363 0.817158989 0.842094821 0.825722774 0.809254386 0.844685348 0.818918331 0.795193524 0.833059475 0.788974535 0.851259297 0.809787505 0.868504736 344342078 CsoS2 Thiocapsa marina 5811 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiocapsa;species:Thiocapsa marina; 1.30011832 1.278940261 1.253875798 1.282775253 1.251597569 1.288219547 1.24781095 1.279163254 1.259982561 1.247814538 1.251704204 1.28395686 1.246672354 1.237188242 1.236986387 1.24794439 1.296063533 1.271402214 326950797 tfth Pseudonocardia dioxanivorans CB1190 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Pseudonocardia;species:Pseudonocardia dioxanivorans; 0.937591116 0.926630582 0.999625838 0.928549818 0.866776762 0.956515107 0.851318778 0.93148793 0.946853883 0.934392132 0.868538626 0.849700157 0.845172645 0.906279542 0.826305409 0.875608868 0.950424128 0.934876402 312113381 dsrB Rhodomicrobium vannielii ATCC 17100 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Rhodomicrobium;species:Rhodomicrobium vannielii; 0.996629261 0.97046957 1.043487465 0.989991009 0.966156226 0.954512876 0.89939028 0.957407861 0.967983906 0.963848315 0.938792943 0.975634548 0.917667051 0.956608081 0.888052887 0.939904831 0.980674087 1.019247548 269303901 ara Xylanimonas cellulosilytica DSM 15894 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Promicromonosporaceae;genus:Xylanimonas;species:Xylanimonas cellulosilytica; 1.259002923 1.248920619 1.185882934 1.223697288 1.170253499 1.246384152 1.159262533 1.19583713 1.210819998 1.223427969 1.179559743 1.187079886 1.162846103 1.193197949 1.142421966 1.191577424 1.243960846 1.247617141 198036974 nitrilase Burkholderia cenocepacia J2315 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cenocepacia; 0.794684359 0.877423705 0.842599492 0.840009959 0.788619104 0.771572197 0.834159293 352094382 FBPase Synechococcus sp. WH 8016 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 0.878315157 0.778236714 0.830242335 0.859030258 0.801615916 0.785570329 0.91768733 0.810122365 330446230 nirb Photobacterium leiognathi subsp. mandapamensis svers.1.1. Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium leiognathi; 0.934313283 0.929636107 0.904022197 0.965922614 0.923499046 0.918033999 0.959339092 0.939376552 0.94802797 0.910471143 0.925921654 0.934969817 0.969534879 0.854763647 0.888803723 0.904021309 0.957461429 0.935146779 398198892 one_ring_23diox Pseudomonas sp. GM67 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 1.020310056 1.005270061 0.989814958 1.024141615 0.980655455 0.982625088 0.958020959 0.996030477 0.983638182 0.983664888 0.963640369 0.981369079 0.961443271 0.988318487 0.949900263 0.965883719 0.998656788 0.989966483 307773204 dmdA Roseibium sp. TrichSKD4 Sulfur DMSP degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseibium; 0.892392368 0.876592442 0.924510624 0.812057956 0.848818758 0.884174827 0.894994478 0.809580503 0.858221468 0.855909567 0.881822841 157913465 napa Dinoroseobacter shibae DFL 12 Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 0.86561954 0.84837989 0.850976085 0.789298071 0.84055262 0.832760201 177840324 CsoS1_CcmK Opitutus terrae PB90-1 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 1.012031834 0.997376584 0.961595787 1.024456555 0.972263419 1.001199469 0.966539567 1.033867567 0.960869835 0.996041562 0.946304804 1.01440333 0.983207754 0.981124521 0.907015502 0.9712935 1.008372999 0.991432036 34017186 dsrB uncultured bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.870619817 0.799755825 0.877850042 0.895914142 0.852919704 0.866921379 0.836751448 0.883564902 0.855346865 0.863742228 0.83128333 0.820018668 0.872370539 0.915109358 254512902 ben_bcla Rhodobacteraceae bacterium KLH11 virulence NA NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 0.831268359 0.886973978 0.904369155 0.920800288 0.868281792 0.880527031 0.846328561 0.818126032 0.776343456 0.798050505 0.884736493 0.803919913 0.813378462 0.807032686 0.81105931 0.852749015 0.882846739 18034320 dsrB Syntrophobacter fumaroxidans Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophobacteraceae;genus:Syntrophobacter;species:Syntrophobacter fumaroxidans; 0.980544835 1.014678548 0.997637209 0.946100102 1.055322329 1.000169389 0.9659739 0.96023002 0.949114493 0.977220663 0.967789767 1.144437904 0.959552778 0.980012452 0.887893442 0.951595179 0.984938745 1.028686225 109452531 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.786668473 0.794752562 0.77564095 0.836665716 0.802167908 0.798847715 0.829090105 116671894 ppx Arthrobacter sp. FB24 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 0.97274579 0.990948194 0.980369781 0.996048012 0.965243551 1.0205698 0.940449125 0.967304818 1.006012229 0.960496966 0.952726073 0.977010676 0.916944031 0.954594319 0.852929591 0.924168524 0.986965671 1.011445267 319742756 gdh Lautropia mirabilis ATCC 51599 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Lautropia;species:Lautropia mirabilis; 0.945229967 0.962928324 0.989083736 0.964416694 0.931946661 0.95179543 0.888290846 0.914219282 0.939153575 0.923910429 0.876283828 0.90866658 0.882370545 0.892411053 0.922285489 0.861895968 0.981534289 1.009128592 83647475 acetylglucosaminidase Hahella chejuensis KCTC 2396 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Hahellaceae;genus:Hahella;species:Hahella chejuensis; 1.153033294 1.167970006 1.173418459 1.166344874 1.163410218 1.172691907 1.148229128 1.175166576 1.150481551 1.128204515 1.130621586 1.143151108 1.12498035 1.084487919 1.087406778 1.113089572 1.13786727 1.136388734 164455786 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 0.972270352 0.942150934 0.964212358 0.95598437 0.88224638 0.963287822 0.932863729 0.970343521 0.945129007 0.95367523 0.957602057 0.953532212 0.906839803 0.969854278 0.968650031 0.914625095 1.000709981 1.004991338 170721195 nbzc Pseudomonas putida W619 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 1.295603342 1.329846705 1.263651578 1.280037749 1.279904342 1.289179459 1.26975143 1.254979783 1.244749239 1.253784018 1.266911045 1.274954261 1.258418427 1.266984149 1.261312437 1.280294385 1.283214712 1.242260714 182382486 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.006253315 1.01871096 0.958696411 1.020308622 0.968962696 1.028975817 0.989459597 0.967453124 0.980866162 1.003118279 0.97198165 0.96896542 0.97066174 1.015179101 0.96125761 1.001254808 1.026171532 1.04734108 41386521 phenol_oxidase Psathyrella corrugis Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Psathyrella; 1.070904225 1.010033766 1.0500568 1.023696718 1.011159793 1.055408616 0.987826137 1.005319036 1.024852942 1.028815043 1.030896494 1.030429014 1.005529223 1.053105735 0.976063103 1.001113959 0.988656209 1.044320794 353451579 cutinase Mycobacterium abscessus 47J26 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium abscessus; 1.285882274 1.26056676 1.228045762 1.248541406 1.242644179 1.250556287 1.229522249 1.196346184 1.234591478 1.268179113 1.220902158 1.244657577 1.184083686 1.23137029 1.185079109 1.221860833 1.252716007 1.254259771 148888431 phenol_oxidase Phanerochaete flavidoalba Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Corticiales;family:Corticiaceae;genus:Phanerochaete; 1.053278271 1.043603586 1.011788818 1.085663837 1.064910513 1.072663266 1.097513125 1.067852696 1.034782885 1.075507992 1.014755151 1.054363554 1.037451527 0.994919259 0.995072335 1.039358435 1.068100697 1.082948184 375103625 tktA Burkholderiales bacterium JOSHI_001 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales; 1.023651874 1.026765537 1.012679297 1.062062422 1.029090868 1.030333321 1.021301039 1.014584626 1.017116556 1.005923189 1.021109434 1.042984505 0.97893294 0.9764208 0.973004972 0.988017991 1.027044044 1.001037122 242216933 exopolygalacturonase_fungi Postia placenta Mad-698-R Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Postia;species:Postia placenta; 0.988516743 0.99827257 0.990976539 0.941016895 0.956722296 0.976038066 0.941264603 0.933690005 0.956518419 0.972238959 0.961185001 0.971482124 0.926990212 0.914968612 0.929395853 0.918883376 1.000094645 0.987402891 339884300 amyA Actinomyces sp. oral taxon 448 str. F0400 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 448; 0.980897293 0.923023106 0.91089266 0.937293441 0.860200946 0.957203481 0.872627543 0.928078771 0.905736416 0.923533356 0.868462256 0.858310993 0.846517717 0.920689811 0.902693633 0.881794444 0.910323425 0.961370988 182382462 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.860616791 0.896303131 0.810130132 0.85357112 0.819062909 0.864693957 0.836451255 0.858575663 0.817794138 0.858365723 0.789916441 0.88720429 0.877281049 190698117 amyA Rhizobium etli CIAT 652 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 1.293538445 1.27872087 1.27630786 1.277561623 1.249674503 1.294963749 1.214114941 1.267027206 1.272367154 1.287670227 1.255811107 1.259007793 1.247013764 1.23555059 1.209302801 1.254016839 1.282681251 1.269337165 302471342 pcpb Streptomyces viridochromogenes DSM 40736 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces viridochromogenes; 1.025193538 0.971084332 0.952864949 1.042000781 0.908373239 0.982875767 0.932201738 0.988047959 1.035632975 0.951706882 0.927668479 0.96708196 0.92183996 0.92261192 0.910345942 0.974038549 1.020559106 0.97340265 119404184 nitrilase Aspergillus clavatus NRRL 1 Organic Remediation Aromatics Other aromatics superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 0.795490494 0.834795697 0.878807673 0.80330996 407999811 nhh Pseudomonas syringae pv. avellanae str. ISPaVe013 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae; 0.957483438 0.969149576 0.977679482 0.944647486 0.975278084 0.983096367 0.958294545 0.924148949 0.933604024 0.952839102 0.962262124 0.960751575 0.926250887 0.914400576 0.881391111 0.922729357 0.974524937 0.96514238 37520099 GAPDH_Calvin Gloeobacter violaceus PCC 7421 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Cyanobacteria;class:Gloeobacteria;order:Gloeobacterales;genus:Gloeobacter;species:Gloeobacter violaceus; 1.174697623 1.240961147 1.170032817 1.192599273 1.171092129 1.214529697 1.152505157 1.180413015 1.171288933 1.142392704 1.158191581 1.166119903 1.141837726 1.146145035 1.143021429 1.170961911 1.200076495 1.190162862 86748076 rubisco Rhodopseudomonas palustris HaA2 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 1.119193087 1.083046454 1.062798463 1.070120686 1.065612908 1.055815856 1.023530262 1.045376855 1.043887946 1.056411878 1.034585396 1.048549688 1.031570601 1.035623775 0.978012565 1.023263536 1.105076699 1.101055551 338782684 alginase Achromobacter xylosoxidans AXX-A Carbon Cycling Carbon degradation Alginate superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter;species:Achromobacter xylosoxidans; 0.859252189 0.91762306 0.811902051 0.876875277 0.858019967 0.902720139 0.875352043 0.834665942 0.83048735 0.885277792 0.889948418 270153915 codh Dehalococcoides sp. VS Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidia;order:Dehalococcoidales;family:Dehalococcoidaceae;genus:Dehalococcoides;species:Dehalococcoides mccartyi; 0.963846315 0.910805961 0.943476069 0.954052085 0.952596439 0.964654244 0.946640183 0.963797836 0.923869236 0.9786443 0.951170101 0.917115559 0.861414146 0.887610888 0.812027525 0.896207835 0.921702024 0.931322943 92431303 catechol Mycobacterium sp. JLS Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 1.121705051 1.104671709 1.050828695 1.0469754 1.020294248 1.082449328 1.00647156 1.039914529 1.071980583 1.050839473 1.056496641 1.046512962 1.03450479 1.038092599 1.009779338 1.057359191 1.102979757 1.064423521 159179174 phn alpha proteobacterium BAL199 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 0.939909264 0.967931234 0.949614221 0.910544679 0.996285303 1.046814166 0.91764408 0.922032371 0.976272889 0.979536477 0.990588196 0.967934898 0.948214453 0.929594769 0.839659931 0.924434171 0.966400502 0.991192316 145232172 phospholipase_A2_fungi Aspergillus niger Carbon Cycling Carbon degradation Phospholipids superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 0.844736983 0.821127599 0.815392441 0.869841408 0.815662339 0.835674573 0.846534352 0.794744299 0.828794452 0.808372309 0.825880992 0.860363389 0.834209489 0.815806592 0.817913989 0.828193004 0.837873435 254476185 soxY Ruegeria sp. R11 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 0.929964103 0.948501698 0.915755476 0.886914678 0.860594997 0.872347135 0.884546092 0.876410472 0.883715205 0.914405715 0.881250961 0.84964761 0.854466043 0.828558677 0.895430517 0.863075745 1.056225611 0.891345794 261291092 aoxb Ralstonia sp. 22 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 0.791545989 0.862082189 0.930092941 0.872127907 0.821440332 0.841156564 0.798079766 0.811599833 0.894315247 0.846398667 0.891408346 0.830810385 0.814161294 0.866839201 0.905122441 302519575 xylg Streptomyces sp. SPB78 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 1.076652032 1.079113777 1.08739935 1.069277 1.05755889 1.063725132 1.039560134 1.03483949 1.028350417 1.040421868 1.048111718 1.030752207 0.998939925 0.98817915 0.977437246 0.995464212 1.068706191 1.065099671 119869716 amyA Mycobacterium sp. KMS Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 1.160344679 1.137287634 1.08819696 1.11945266 1.097069991 1.132817845 1.09941338 1.087214373 1.091452804 1.124665058 1.095891567 1.11375523 1.084335101 1.10744839 1.066274548 1.090415228 1.121765964 1.104992686 71914716 chitinase Thermobifida fusca YX Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Thermobifida;species:Thermobifida fusca; 0.861257134 0.947843338 0.829149659 0.894082234 0.898390289 0.935514271 0.881433882 0.913566691 0.909300055 0.871634745 0.863547847 0.929853373 0.873575939 0.881501852 0.860830726 0.841071639 0.870313505 0.963223015 308226331 phn Oscillochloris trichoides DG6 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Oscillochloridaceae;genus:Oscillochloris;species:Oscillochloris trichoides; 0.988283481 0.989613426 1.013491345 1.052098157 1.019237816 1.04264679 1.069649333 1.06066191 1.092811997 1.040392785 0.994296069 1.038142872 0.987417235 1.004786988 1.024476115 1.015944431 1.000193735 0.992656051 209958930 cysI Rhodospirillum centenum SW Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum centenum; 1.465838107 1.40687667 1.387000807 1.412659743 1.359401041 1.441535586 1.341262132 1.379456497 1.406049554 1.378901072 1.365917699 1.363112126 1.355334501 1.349871487 1.305934503 1.34666583 1.454910817 1.393867092 328856699 ara Melampsora larici-populina 98AG31 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;order:Pucciniales;family:Melampsoraceae;genus:Melampsora;species:Melampsora larici-populina; 1.090975383 1.074572616 1.105115011 1.083155979 1.026460524 1.070317756 1.04142364 1.079782292 1.085848121 1.10433713 1.078997077 1.112566688 1.039228496 1.100437456 1.085640533 1.053926939 1.070842446 1.063988076 384135775 dehh109 Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Alicyclobacillus;species:Alicyclobacillus acidocaldarius; 0.912135948 0.900880176 0.927244906 0.958401568 0.898797832 0.881381999 0.86090736 0.911021836 0.935705538 0.873158451 0.877768508 0.905536154 0.891753297 0.850443434 0.873974423 0.931401315 0.9175406 0.925043016 296843788 chitinase Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Nocardiopsis;species:Nocardiopsis dassonvillei; 1.127828038 1.066250938 1.105598399 1.14339087 1.104093996 1.119740416 1.111030636 1.140273522 1.118037001 1.084378978 1.073494555 1.089617412 1.088114087 1.052807688 1.041196141 1.057373477 1.130511669 1.081035185 319915296 vgb mine drainage metagenome Virulence Antibiotic resistance Degradation 0.893492476 0.891391153 0.83700598 0.934275421 0.894361511 0.895925998 0.848662291 0.853226378 0.839143335 0.866558329 0.862657692 0.86865227 0.895884712 0.827067182 0.840514345 0.866194471 0.911486995 0.926314873 387875981 amyA Mycobacterium sp. MOTT36Y Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 1.124220858 1.099648143 1.109196657 1.130741619 1.098009347 1.141061477 1.116526115 1.135296175 1.080951061 1.08292987 1.109316094 1.127739269 1.112740734 1.065965458 1.062356945 1.072753231 1.122322603 1.094647808 398155907 badh Pseudomonas sp. GM24 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.875240768 0.871181267 0.866953077 0.886681188 0.832990389 0.845501684 0.86313764 0.8631772 1.097416655 0.826153219 0.808726536 0.857789886 0.828025946 0.845532355 0.935240511 0.855865671 257056038 xylc Saccharomonospora viridis DSM 43017 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora viridis; 1.09017864 1.097728878 1.014633393 1.062526529 1.00738638 1.048914875 1.302554252 1.033345136 1.017601686 1.02586773 0.991761098 1.03799366 0.983819983 1.030968829 0.986481036 1.013948899 1.072695048 1.035823215 337269987 FBPase Mesorhizobium opportunistum WSM2075 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium opportunistum; 0.835868713 0.862055531 0.857028263 0.875112694 0.892531086 0.880428875 0.879293446 0.908164744 0.873733418 0.903802542 0.859279212 0.851275683 0.81324724 0.831226591 0.867128413 47156902 phospholipase_D_fungi Antonospora locustae Carbon Cycling Carbon degradation Phospholipids superkingdom:Eukaryota;kingdom:Fungi;phylum:Microsporidia;genus:Antonospora; 0.843587555 0.798887425 0.846693143 0.861472007 0.822042856 0.862966228 0.854929725 0.867924155 0.82878946 0.843378549 0.833088989 87082457 mcra uncultured euryarchaeote Carbon Cycling Methane Methanogenesis superkingdom:Archaea;phylum:Euryarchaeota; 0.868622029 0.861712409 0.82235451 0.889708411 0.83269804 0.82291731 0.84171631 0.825350764 0.882380198 0.869393458 350275103 PEPC Thermoproteus tenax Kra 1 Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Thermoproteus;species:Thermoproteus tenax; 1.058231505 1.078656726 1.082898359 1.105066467 1.109163359 1.115193409 1.08019958 1.109983266 1.079878789 1.100948454 1.218870202 1.105193544 1.051348843 1.064122821 1.039262859 1.057047086 1.062574123 1.102808938 110647724 atza Alcanivorax borkumensis SK2 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax;species:Alcanivorax borkumensis; 1.383385916 1.360907678 1.377291582 1.39055201 1.396406376 1.409142124 1.379073843 1.405600494 1.379054668 1.35619305 1.377586574 1.403494041 1.381674931 1.33371589 1.387278242 1.361237305 1.39055694 1.330078403 196478297 ppx Phenylobacterium zucineum HLK1 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Phenylobacterium;species:Phenylobacterium zucineum; 0.973450668 1.019327936 1.015404261 1.031952928 1.022727374 0.989262711 1.003913142 0.997721331 0.97275377 0.973049135 0.969793831 0.99712346 0.981181135 0.947739231 0.978378327 1.006184899 0.995509617 1.029975494 262333572 mannanase Rhodothermus marinus DSM 4252 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Rhodothermaceae;genus:Rhodothermus;species:Rhodothermus marinus; 0.901999924 0.804561277 0.887477472 0.852680542 0.935404637 0.92787978 0.865639442 0.879273281 0.848434003 0.887518096 0.879893532 0.886614196 0.873164801 0.851743106 0.826908566 0.993000444 0.892528175 308056218 cueo Pantoea vagans C9-1 Metal Homeostasis Copper Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea;species:Pantoea vagans; 1.128758994 1.11445668 1.06345294 1.120051514 1.050777528 1.079511751 1.069083038 1.104091815 1.098084447 1.089069278 1.071760204 1.107699103 1.044051128 1.023876651 1.043569266 1.068793964 1.119821542 1.099386385 386867698 amyA Bifidobacterium animalis subsp. animalis ATCC 25527 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium animalis; 0.956612827 0.923952409 0.893491768 0.932253417 0.831058438 0.906891222 0.858688095 0.915756672 0.897095762 0.914355484 0.890534499 0.860176756 0.890134427 0.894066014 0.942288843 0.880098764 168700884 xyla Gemmata obscuriglobus UQM 2246 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Gemmata;species:Gemmata obscuriglobus; 0.983244926 1.035837564 1.040761295 1.048375241 1.054856402 1.020311896 1.063472683 1.049469597 1.01413512 1.04915252 1.058917779 1.073561557 1.039216581 1.026987085 1.081906177 1.053245617 1.001043532 1.03640359 376372764 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.234374769 1.20891411 1.217307747 1.250927923 1.203207851 1.219174705 1.208501737 1.210855573 1.196883804 1.196697316 1.204859789 1.237592312 1.170869956 1.151951537 1.140899209 1.175664529 1.217222288 1.213175324 239927944 urec Streptomyces ghanaensis ATCC 14672 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces ghanaensis; 1.245088856 1.24960707 1.215275016 1.250091098 1.225791808 1.217048517 1.239234195 1.242323475 1.250997676 1.213637462 1.241384308 1.245109041 1.221445316 1.181737649 1.173489877 1.184725133 1.238002341 1.244570895 353203241 fosb Paenibacillus lactis 154 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus lactis; 0.912237276 0.894016789 0.897729934 0.949662492 0.918615858 0.888347255 0.894756513 0.890754238 0.920733955 0.894421859 0.902629068 0.938517875 0.822039031 0.824426992 0.833055329 0.831516086 0.875923128 0.873725126 117928667 chitinase Acidothermus cellulolyticus 11B Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Acidothermaceae;genus:Acidothermus;species:Acidothermus cellulolyticus; 0.853235474 0.975199209 0.909759591 0.921071715 0.935677922 0.897542204 0.820602133 0.850821191 0.89302806 0.91969145 0.866563385 0.8889089 0.852836857 0.843835868 0.886659354 0.886736445 0.910363788 407694892 amie Alcanivorax dieselolei B5 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax;species:Alcanivorax dieselolei; 1.359531884 1.312215801 1.324868274 1.356119283 1.324808013 1.322063349 1.319751758 1.318765969 1.315911283 1.306966076 1.295968212 1.336635023 1.291014778 1.269655226 1.306944506 1.317555233 1.339058643 1.307262087 77378791 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.002754822 1.001708868 0.997847017 1.015090259 1.021320638 1.022559963 1.001905958 1.005741703 0.990380685 1.023179472 1.014302792 1.043114437 0.980932259 0.977215647 0.966091843 0.952833355 0.974555888 0.999647379 385656233 nagg Streptomyces sp. WT3 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 0.864320363 0.86788232 0.851613758 0.858127533 0.844282739 0.840144314 0.930773302 0.855118674 0.820321949 0.860742072 0.834232619 0.812811533 0.896043283 0.863788172 163743362 urec Phaeobacter gallaeciensis 2.10 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 1.345832299 1.364128844 1.359638163 1.32319268 1.323157826 1.371296546 1.321115964 1.32107581 1.32571779 1.346358986 1.33275878 1.339314073 1.304842661 1.314428618 1.275978062 1.316917909 1.31787943 1.346559879 363423711 cpnc Rhodococcus pyridinivorans AK37 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus pyridinivorans; 0.765924862 0.822539838 0.840871982 0.804784096 0.83879147 0.836177093 0.834782549 0.799869909 0.846126363 0.855844153 0.920094253 0.836034508 0.81317845 0.859668653 290955823 gdh Streptomyces scabiei 87.22 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces scabiei; 0.916713674 0.941303818 0.802577833 0.904516867 0.866777218 0.905588956 0.840525348 0.860131737 0.940776465 0.852372353 0.917858474 0.842072545 0.898552769 0.85857159 0.903349908 0.943170929 399544321 phdk Marinobacter sp. BSs20148 Organic Remediation Polycyclic aromatics NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter; 0.867354094 0.84884835 0.863406614 0.913499812 0.859985442 0.894630179 0.908164428 0.884450129 0.86669868 0.844524838 0.83562488 0.891006236 0.781931921 0.800472405 0.856011532 0.866765728 374413723 dsra uncultured prokaryote Sulfur sulfite reduction NA 0.877023371 0.858979077 0.910757174 0.909736388 0.83409072 0.856730892 0.81516647 0.876535633 0.880650997 0.82425721 0.843534501 0.861807395 0.838346274 0.843203253 0.87546201 0.884761444 0.852237124 124022279 amyA Prochlorococcus marinus str. MIT 9303 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Cyanobacteria;order:Prochlorales;family:Prochlorococcaceae;genus:Prochlorococcus;species:Prochlorococcus marinus; 0.975855361 0.973627692 0.96515094 1.005458371 0.972096329 0.958313252 0.961789649 0.99736834 1.003094156 0.907720455 0.931975715 1.024452577 0.948399748 0.936818258 0.943113889 0.916433605 0.984136161 0.958571377 301798068 bphF1 gamma proteobacterium HdN1 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 1.099657177 1.059669508 1.074446513 1.096946987 1.088996624 1.043987511 1.071004647 1.064548863 1.074373101 1.063552486 1.089983646 1.088135452 1.071387157 1.021543927 1.112390533 1.056928855 1.091038145 1.041250929 375159622 AACT_DiC4HB Pyrobaculum oguniense TE7 Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum oguniense; 0.810463102 0.856661114 0.831707166 0.815215152 0.825989513 0.845143517 184196978 tktA Burkholderia phymatum STM815 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 0.81689399 0.860652609 0.857315964 0.836797274 0.858976587 0.816594664 0.882081111 0.899551294 295440094 xylanase Burkholderia sp. CCGE1002 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 0.792629994 0.789190634 0.805837792 223585981 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.093171631 1.05275011 1.077594943 1.094407946 1.038620767 1.069748158 1.062982997 1.09422053 1.081578773 1.075248759 1.03089718 1.075695321 1.016121799 1.021991488 0.991709315 1.044821281 1.060501142 1.053672406 333389803 mer Centipeda periodontii DSM 2778 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Centipeda;species:Centipeda periodontii; 1.348053098 1.329286564 1.345957698 1.367661775 1.330481842 1.317602001 1.322608541 1.352950418 1.34622842 1.326481377 1.314776859 1.368649815 1.297613338 1.276573474 1.311865398 1.305690619 1.330355055 1.304291874 319993980 CsoS1_CcmK Anaerolinea thermophila UNI-1 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Chloroflexi;class:Anaerolineae;order:Anaerolineales;family:Anaerolineaceae;genus:Anaerolinea;species:Anaerolinea thermophila; 1.178403173 1.144661154 1.169820904 1.192750057 1.183000014 1.114724874 1.120211348 1.156564667 1.167222075 1.141517501 1.133476554 1.203151725 1.144286206 1.115656786 1.160357851 1.106750805 1.153400819 1.107913006 323095079 amyA Prevotella oralis ATCC 33269 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella oralis; 0.966988 0.992043188 0.963829634 1.010963916 0.999413557 0.985777935 0.919951798 0.977320029 0.964964528 0.969560079 0.934721946 0.974931887 0.938588757 0.93208315 0.924972823 0.935033014 0.984024627 0.992104162 319783963 FBPase Mesorhizobium ciceri biovar biserrulae WSM1271 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium ciceri; 0.804124216 0.820440323 0.815996402 0.83758255 0.79017931 0.812528287 0.791476417 0.834482362 0.811446963 0.821067586 78218561 APS_AprB Desulfovibrio desulfuricans G20 Sulfur adenylylsulfate reductase NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio alaskensis; 0.860110326 0.869977861 0.829759897 0.900405986 0.856953192 0.863212413 0.802821745 0.794344523 0.855527066 0.838380777 0.863207641 0.883506852 0.899170365 298554219 amyA Listeria monocytogenes EGD-e Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Listeriaceae;genus:Listeria;species:Listeria monocytogenes; 0.769542217 0.785184165 0.79495922 0.832991066 0.813632617 0.795048277 0.838275669 71383860 nasa uncultured bacterium Nitrogen Assimilatory N reduction NA superkingdom:Bacteria; 0.878490816 0.897676449 0.8780919 0.89988189 0.883735823 0.881291284 0.877197899 0.876586849 0.855766442 0.862745551 0.891985279 0.856879472 0.871020869 0.842251871 0.824893154 0.89707842 0.843632179 296268859 amyA Thermobispora bispora DSM 43833 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Thermobispora;species:Thermobispora bispora; 1.202585775 1.172666554 1.218009113 1.200589643 1.166193874 1.161174704 1.136610534 1.167980121 1.176450877 1.190984058 1.209530783 1.222823608 1.174603073 1.165190414 1.13199604 1.16960153 1.171305685 1.150950705 78061637 vana Burkholderia sp. 383 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 0.857427117 0.830699854 0.809924595 0.82591099 0.81325246 0.82783542 0.837182332 0.821124472 0.846529097 329903209 cysI Oxalobacteraceae bacterium IMCC9480 Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae; 0.846753334 0.797919939 0.820323571 0.840502017 0.836630614 0.839368906 0.873357246 0.840675287 0.812051477 0.836986141 0.81755226 0.80623269 0.776139939 0.872730414 84502425 alkk Oceanicola batsensis HTCC2597 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola batsensis; 0.955237978 0.912809107 0.831072445 0.850501508 0.881839632 0.923472241 0.848549266 0.832229138 0.914322042 0.866122121 0.849028309 0.887311375 0.824150517 0.826078798 0.84934789 0.87521068 0.897984422 0.937208414 255707844 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.770315993 0.806526053 0.887681846 0.825858461 0.8712656 0.879313148 0.818970395 0.881544605 0.806262841 0.866555411 28971827 mult_ring_12DiOx Sphingomonas sp. P2 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 1.144677236 1.074115826 0.97106867 0.999052772 0.964491792 0.998917292 0.988235416 0.955870217 0.988531699 1.023838059 0.988866959 0.989831368 0.951950836 0.983427332 0.91264328 0.94792486 0.959223869 1.001293596 157913494 nosz Dinoroseobacter shibae DFL 12 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 0.840563223 0.820924273 0.850728399 0.866068937 0.793219845 0.872507574 0.878576199 0.840349322 0.897631188 0.826033586 0.852278878 0.800186754 0.803557421 374387517 fthfs Paenibacillus dendritiformis C454 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus dendritiformis; 1.013673137 0.904595186 0.855460682 0.985401853 0.844790667 0.978950048 0.91124192 0.908866655 0.943759443 0.90469545 0.959367671 0.912045177 0.869479506 0.879103509 0.828095861 0.904458209 0.95276616 0.939723724 50837698 exoglucanase Aspergillus tubingensis Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 1.204815747 1.194605734 1.179955656 1.183946281 1.156545161 1.203508335 1.144851913 1.155687768 1.156843862 1.166843668 1.155069595 1.163777164 1.148025143 1.14767114 1.155910838 1.164578694 1.222145707 1.178921251 223586063 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.997125075 0.979471248 0.955366091 0.98168538 0.978700107 1.012639168 0.970919262 0.954083687 0.967920254 0.972376813 0.941964608 0.954725294 0.936797786 0.953261139 0.935898778 0.901738348 1.00157817 0.986772948 422314103 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.911461584 0.921510757 0.874028522 0.909872699 0.843482054 0.939818457 0.831278126 0.91307232 0.920297723 0.937988573 0.890024978 0.859299551 0.802039353 0.853637507 0.84282953 0.929003045 0.930434223 389691235 cmci Microvirga sp. WSM3557 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Microvirga; 0.820163146 0.819143594 0.850426002 0.828690078 0.793211108 0.830209563 32470978 amyA Rhodopirellula baltica SH 1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Rhodopirellula;species:Rhodopirellula baltica; 1.186013295 1.181069248 1.168283386 1.14327998 1.129848688 1.153941603 1.130423592 1.154103276 1.126762707 1.129979766 1.163415999 1.159284348 1.133009259 1.154390037 1.110499733 1.137789854 1.134165565 1.151779063 113526720 catechol Ralstonia eutropha H16 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 0.815257707 0.890085394 0.83375709 0.863096087 0.878194442 0.823107804 0.778944505 0.884302949 0.8565422 0.856699473 0.802246191 0.825962167 0.84122346 0.881695326 197773295 ppx Streptomyces pristinaespiralis ATCC 25486 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces pristinaespiralis; 1.028756747 1.053974737 1.045301319 1.018104328 0.969096863 1.049829555 0.99122125 1.011138791 1.021893108 0.998589993 0.971863492 1.006768586 0.951037886 1.016127182 0.953132354 1.001092757 1.024601635 1.061326107 374426438 mdlc Bradyrhizobium sp. WSM471 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.924649558 0.973342311 0.93226512 0.991269053 0.931393508 0.961662114 0.900884934 0.905152404 0.916578306 0.903107098 0.899555205 0.911327551 0.928438675 0.890929473 0.952964611 0.889306273 0.956218762 0.93725433 125486857 fthfs uncultured bacterium Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria; 0.792652562 0.805296705 0.801497096 0.826364589 0.835319031 0.804357339 0.801483055 0.843514003 374302818 bphF1 gamma proteobacterium HIMB55 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 0.959036467 0.889438703 0.849586655 0.922540214 0.837501681 0.821267395 0.864041763 0.935337002 0.918184695 0.825866305 0.829459217 0.853407831 0.855389267 0.808207095 0.82104161 0.88706484 0.868762841 214037441 linb marine gamma proteobacterium HTCC2148 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 0.974616199 1.022911327 1.025835968 1.029015769 1.003312813 0.981750866 1.041263194 1.039691913 1.009195504 0.955963935 0.960114647 1.037097131 0.922806211 0.901226248 0.932441877 0.922404107 1.046144187 1.058194055 302678960 phenol_oxidase Schizophyllum commune H4-8 Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 1.116935555 1.105352109 1.096857534 1.12667364 1.108826894 1.111769884 1.112624463 1.089313373 1.062213609 1.073910276 1.103015179 1.106299175 1.080007011 1.066412952 1.065405511 1.07887177 1.141512449 1.060116058 227467010 tktA Burkholderia xenovorans LB400 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 1.002536191 1.022152965 1.098076431 1.029039091 1.055521777 1.022142834 1.07048897 1.013182226 1.03758876 1.091871306 1.004198522 1.022372966 0.985028453 0.943471737 0.933948995 0.968507343 1.013783059 0.999052498 361054942 xylj Sulfobacillus acidophilus DSM 10332 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XVII. Incertae Sedis;genus:Sulfobacillus;species:Sulfobacillus acidophilus; 0.867989361 0.850781576 0.827813943 0.865025637 0.855815048 0.906156838 0.816591735 0.870473568 0.862871772 0.86292217 0.874893174 0.867644754 0.825767286 0.850657425 0.826247974 0.843264075 0.867029747 0.871230114 171688044 endochitinase Podospora anserina S mat+ Carbon Cycling Carbon degradation Chitin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Lasiosphaeriaceae;genus:Podospora;species:Podospora anserina; 0.885247048 0.891295971 0.852964302 0.914789101 0.851818563 0.881080339 0.833445512 0.889284848 0.879480915 0.870411454 0.815064758 0.862983501 0.836566235 0.846089915 0.837738902 0.922347537 0.930705221 313201314 cysI Methylovorus sp. MP688 Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Methylophilales;family:Methylophilaceae;genus:Methylovorus; 0.92401572 0.929685733 0.955237076 0.950349077 0.928885829 0.952438486 0.942477751 0.936159906 0.945937984 0.982855985 0.952499396 0.958664503 0.949477125 0.923611397 0.929316856 0.951358498 0.995634402 0.989347165 222543363 phytase uncultured bacterium Phosphorus Phytic acid hydrolysis NA superkingdom:Bacteria; 0.808578151 0.822400805 0.820373064 0.811937772 407939662 dehh Acidovorax sp. KKS102 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 1.121053366 1.154503583 1.043801574 1.147835196 1.123680165 1.157609215 1.119302984 1.119132801 1.089191449 1.103437162 1.09819798 1.127125592 1.095298293 1.055159663 1.106704661 1.114129601 1.120717829 1.092878747 241258666 nagg Rhizobium leguminosarum bv. trifolii WSM1325 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 0.847898 0.887733779 0.848953071 0.826984618 0.812746056 121302629 linb Ralstonia pickettii 12J Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 1.042776549 1.009113319 1.018446203 1.027507938 0.992806602 1.015641965 0.997249471 1.049203528 1.025927642 1.011871486 1.013008962 1.02785844 0.998545202 1.009491784 1.010294838 1.02937127 1.023100625 0.998398965 184200301 amyA Kocuria rhizophila DC2201 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Kocuria;species:Kocuria rhizophila; 0.970886907 0.948043974 0.980653396 1.003134691 0.978100057 0.997631002 0.948509745 0.992232108 0.993683516 0.995219422 0.965838883 0.977942883 0.934916355 0.971131829 0.920928413 0.951037662 0.979766827 0.984814892 170777868 tktA Leptothrix cholodnii SP-6 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Leptothrix;species:Leptothrix cholodnii; 1.154145362 1.118607844 1.098188605 1.11774327 1.066749901 1.098297188 1.086090863 1.087970206 1.110416412 1.066531701 1.076023872 1.084246432 1.066308576 1.069012763 1.075658664 1.084223591 1.119860412 1.075386522 330818496 arsc Burkholderia gladioli BSR3 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia gladioli; 1.085540041 1.149332629 1.081656073 1.095395152 1.092512941 1.103945276 1.04386714 1.033270555 1.049719169 1.070240732 1.045207224 1.077175246 1.017340471 1.0235261 1.054733297 1.046173408 1.104013829 1.138308844 77026370 pcpe Pimelobacter simplex Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Pimelobacter; 1.225081906 1.427999361 1.234440078 1.20651183 1.206096564 1.218826272 1.162740088 1.243191276 1.142110965 1.1593325 1.288494041 1.178909949 1.129046141 1.171823052 1.13955593 1.207342646 1.19162218 1.155593432 389666237 nbac Nitritalea halalkaliphila LW7 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cyclobacteriaceae;genus:Nitritalea;species:Nitritalea halalkaliphila; 1.355390135 1.286103114 1.297255585 1.323276161 1.273955284 1.31435438 1.269683717 1.292274551 1.303881942 1.275306615 1.279322557 1.276196265 1.256604099 1.23018157 1.224812682 1.255934903 1.325688045 1.255743696 254416112 amyA Microcoleus chthonoplastes PCC 7420 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Coleofasciculus;species:Coleofasciculus chthonoplastes; 0.863080547 1.002244122 0.814180012 0.875916624 0.921444029 0.790137488 0.981615593 0.881857103 0.893749052 0.833152599 0.996795713 1.013041915 1.083566675 0.936980035 0.940772572 269139956 acetylglucosaminidase Edwardsiella tarda EIB202 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Edwardsiella;species:Edwardsiella tarda; 0.821401586 0.807525756 0.788148299 0.845677094 0.79863014 0.84521816 0.844344918 0.791243764 0.811770965 0.854548716 116063246 aoxb Aeropyrum pernix K1 Metal Homeostasis Arsenic Detoxification superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Desulfurococcales;family:Desulfurococcaceae;genus:Aeropyrum;species:Aeropyrum pernix; 1.135072393 1.125333586 1.110512848 1.101228086 1.097291703 1.116145259 1.050413657 1.084604374 1.102065551 1.091319492 1.070705852 1.08490164 1.033959934 1.06803578 1.034056627 1.082525037 1.0962892 1.108895925 320551868 dehh109 Haladaptatus paucihalophilus DX253 Organic Remediation Chlorinated solvents NA superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haladaptatus;species:Haladaptatus paucihalophilus; 1.211571663 1.182802828 1.184123483 1.204967318 1.179276838 1.206539545 1.173534373 1.191836939 1.191501424 1.166847573 1.190248885 1.187593003 1.178792501 1.14537417 1.134136975 1.157553578 1.227851414 1.167586654 323359198 amyA Microbacterium testaceum StLB037 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Microbacterium;species:Microbacterium testaceum; 0.937194683 0.921105634 0.905646322 1.000498742 0.917069761 0.961301664 0.922724163 0.955755207 0.964607018 0.917269452 0.894249744 0.908353657 0.884578222 0.916821632 0.896480506 0.915436378 0.962427947 0.941867866 268679603 AcnA Sulfurospirillum deleyianum DSM 6946 Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Sulfurospirillum;species:Sulfurospirillum deleyianum; 1.324759281 1.292005221 1.306951849 1.356422599 1.304994183 1.301137689 1.29736769 1.317311391 1.30494825 1.275557215 1.289656732 1.336507966 1.2840391 1.23659214 1.269611813 1.263701462 1.323710159 1.260807221 377577324 cysJ Escherichia hermannii NBRC 105704 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia hermannii; 1.027916635 1.083603556 1.063894324 1.087130466 1.061515356 1.076322415 1.02933969 1.038555956 1.072530296 1.095087316 1.070842397 1.100739671 0.983952811 1.033770208 0.989326506 1.030477831 1.047056426 1.049640992 115422917 gdh Bordetella avium 197N Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella avium; 1.239829336 1.26554203 1.22612333 1.2676154 1.218512804 1.227122349 1.224672386 1.216602338 1.235724119 1.215007418 1.232407204 1.254312396 1.189122876 1.18088121 1.134118047 1.182895391 1.225266474 1.207935703 219544300 amyA Chloroflexus aggregans DSM 9485 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aggregans; 1.214516303 1.259448537 1.198820415 1.191638811 1.21785053 1.25378631 1.18877264 1.192716842 1.189424127 1.212765917 1.195553375 1.19333582 1.197644424 1.199497391 1.185977357 1.224695328 1.231014811 1.229176393 145305377 xylg Salinispora tropica CNB-440 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora tropica; 0.884228528 0.898785488 0.946114459 0.952505137 0.976007049 0.981365994 0.971016145 0.938295307 0.922596702 0.978524015 1.001180542 0.942056771 0.915053958 0.92576648 0.9080671 0.863328461 0.930411648 0.94584089 110827739 ara Verminephrobacter eiseniae EF01-2 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 0.990228456 0.974298504 0.952801743 1.001615673 0.968675709 0.973760214 0.953712574 0.934610409 0.96891756 0.953147995 0.96535047 0.954117637 0.949838612 0.92519824 0.938316671 0.93839346 0.998994796 0.95796507 344342891 arylest Marichromatium purpuratum 984 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Marichromatium;species:Marichromatium purpuratum; 0.792577719 0.820156515 0.824270889 0.858639955 0.856615 0.843371587 0.816196066 0.835646984 0.822517619 302413349 cellobiase Verticillium albo-atrum VaMs.102 Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticilium;species:Verticillium albo-atrum; 0.921485855 0.995630786 0.972587528 1.081520209 0.960248745 0.959151195 0.94810836 0.98260957 1.011417622 0.998233174 1.011379356 1.017336662 0.945489685 0.957055676 0.881712535 0.93798498 1.016340074 0.990815972 169772161 cutinase Aspergillus oryzae RIB40 Carbon Cycling Carbon degradation Cutin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus oryzae; 0.928367657 0.907177169 0.928846299 0.9307829 0.875445637 0.837984495 0.84478721 0.905222877 0.905535235 0.832919863 0.851346884 0.871010725 0.855386171 0.838065614 0.930293779 0.91133941 70930940 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.891572639 0.90557689 0.903518266 0.904253705 0.90240675 0.870607451 0.840563877 0.876874182 0.909719813 0.884768238 0.833982327 0.871886485 0.830437215 0.84819434 0.842584934 0.821228076 0.879728787 0.892908046 123200219 ccmL Prochlorococcus marinus str. MIT 9515 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Cyanobacteria;order:Prochlorales;family:Prochlorococcaceae;genus:Prochlorococcus;species:Prochlorococcus marinus; 1.101970443 1.104830993 1.117791465 1.088388132 1.048235949 1.137630669 1.053643459 1.10006331 1.113686191 1.084914908 1.074323201 1.06190321 1.024642745 1.086208128 1.033885303 1.052248101 1.084709074 1.104439325 365900074 exaa(moxf) Bradyrhizobium sp. STM 3843 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.849710683 0.814520865 0.835383709 0.821674699 0.805186112 0.861700507 0.801920885 0.839363462 0.817407524 329956854 pula Bacteroides clarus YIT 12056 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides clarus; 1.020634757 1.005598395 1.011882759 1.006625443 1.02755195 1.057978356 1.046463766 1.020395184 1.01720766 1.07152103 1.072811046 1.018728903 1.054628114 1.034835855 1.030110857 0.963981568 1.015729496 0.95120257 89512254 nifh uncultured nitrogen-fixing bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 1.217242933 1.208905898 1.168693731 1.202602844 1.221506469 1.193264345 1.170287946 1.147687001 1.201544284 1.194139903 1.210563793 1.209476238 1.188293587 1.139898169 1.160657493 1.162736815 1.189087041 1.172702135 297559740 chitinase Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Nocardiopsis;species:Nocardiopsis dassonvillei; 1.09067687 1.072423349 1.040734283 1.072451256 1.048627786 1.080030531 1.03212032 1.106996004 1.066086806 1.065232017 1.013375764 1.03311254 1.013091488 1.007666307 0.948611522 1.022914457 1.07761899 1.054721953 384920705 phdci Citreicella sp. 357 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Citreicella; 0.913962652 0.908037206 0.961371659 0.891583022 1.047534558 0.940522059 0.903341442 0.831137103 1.04805271 0.954206193 0.991478111 1.09850084 0.909332267 0.913524244 0.947385726 0.872687327 0.946418728 0.926535802 391324258 arsc Agrobacterium sp. GW4 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium; 1.363950891 1.333398382 1.342480432 1.359559022 1.326000077 1.364296152 1.320533729 1.339420793 1.353352427 1.328419847 1.332558861 1.343820444 1.292987039 1.267368478 1.265016405 1.253798133 1.346253758 1.312062813 359736053 pcag Rhodococcus pyridinivorans AK37 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus pyridinivorans; 0.88803201 0.899381313 0.820761186 0.875806171 0.840134709 0.837324549 0.820870425 0.881595031 0.856073581 0.829270645 0.839062933 0.808477042 0.85217889 0.833186713 0.842933661 0.869843117 0.88764324 341572377 aps_apra delta proteobacterium SM-66-47 Sulfur adenylylsulfate reductase NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 1.35316135 1.316127566 1.308793759 1.314266311 1.321386724 1.344359506 1.298495861 1.31516367 1.295145792 1.280922307 1.300393435 1.31808279 1.319306715 1.257582858 1.295402013 1.305272139 1.344553018 1.298079177 114739536 fccab Hyphomonas neptunium ATCC 15444 Sulfur Sulfide Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Hyphomonas;species:Hyphomonas neptunium; 0.861887819 0.817707585 0.834776851 0.875218267 0.786679694 0.859234065 0.826369653 0.843079319 0.8236928 0.822901741 0.834067811 0.815980352 221084226 tfda Variovorax paradoxus S110 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 1.06041695 1.067097119 1.070112318 1.095808634 1.071384036 1.077806582 1.072945666 1.096049775 1.064782534 1.055030174 1.06814645 1.072959189 1.053310155 1.027077833 1.02113802 1.065603271 1.085658793 1.082973343 56798375 catechol_b uncultured bacterium Organic Remediation Aromatics Other aromatics superkingdom:Bacteria; 1.146989842 1.133258424 1.134636967 1.202532463 1.144768105 1.13908338 1.141142638 1.157118933 1.151616003 1.144851576 1.167856824 1.150678784 1.109733172 1.093352279 1.095161174 1.124864369 1.181543542 1.149993192 363712548 mdlc Acetobacteraceae bacterium AT-5844 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae; 1.029570433 1.031236204 1.023693446 1.031841516 1.017706082 1.064590133 1.025659784 1.01407996 1.034914101 1.054650776 1.007883319 1.021901349 1.020557572 1.018505184 1.009245434 1.03049814 1.036622254 1.037016503 319414067 phenol_oxidase uncultured bacterium Carbon Cycling Carbon degradation Lignin superkingdom:Bacteria; 1.031341234 1.027498409 1.008232634 1.013243589 1.028522146 1.017059721 1.000345504 0.970562771 1.011636831 1.00741343 1.072209551 1.020347281 1.006762109 0.992379461 0.966009627 0.98756398 1.034232718 1.014138315 138894322 nirk Geobacillus thermodenitrificans NG80-2 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus;species:Geobacillus thermodenitrificans; 0.941434613 0.906809186 0.93548286 0.917078395 0.899640947 0.908279932 0.902008506 0.933497421 0.915012342 0.946903087 0.922864934 0.899175648 0.916125913 0.884395916 0.900523469 0.91119012 0.893069171 0.925927368 184197561 FBPase Burkholderia phymatum STM815 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 0.783579806 0.789694681 0.80575989 0.853847847 0.79973827 0.786866733 0.814182283 15789980 dmsa Halobacterium sp. NRC-1 Organic Remediation Others NA superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halobacterium;species:Halobacterium salinarum; 1.175626023 0.943474597 1.027987898 1.011435553 1.004488277 1.119889386 1.102970308 0.980818107 0.967421384 1.122319455 1.021503676 1.021916388 1.082119615 1.048571264 1.049077172 1.099562619 1.044781914 1.116919109 290572556 amyA Stackebrandtia nassauensis DSM 44728 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Glycomycetaceae;genus:Stackebrandtia;species:Stackebrandtia nassauensis; 0.920551402 0.907998081 0.92603966 0.902749333 0.82868918 0.849749196 0.855123325 0.891987271 0.859612479 0.874140125 0.816147536 0.855553903 0.869520434 0.859299425 0.901896827 0.901634821 78519228 vana Bradyrhizobium sp. BTAi1 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.975727593 0.922569853 0.934664366 0.97453175 0.85928014 0.94254717 0.869362029 0.930417595 0.936843614 0.91415386 0.942592968 0.959693161 0.862310537 0.917055768 0.876963654 0.926194002 0.969366961 0.940061749 167594299 pmoa uncultured bacterium Carbon Cycling Methane Methane oxidation superkingdom:Bacteria; 0.957938088 0.986264652 0.974993074 0.936930781 0.870252476 1.000023736 0.882341445 0.968002008 0.920025005 0.949423376 0.946712768 0.926050057 0.927192899 0.946950933 0.905024925 0.940211719 0.981297096 0.986677991 325274692 ppx Pseudomonas sp. TJI-51 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.888450343 0.916571746 0.841101588 0.878836978 0.873903011 0.886764067 0.859967882 0.85465672 0.864387784 0.880712356 0.840843222 0.90881086 0.915821534 212714444 pula Bifidobacterium pseudocatenulatum DSM 20438 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium pseudocatenulatum; 0.929723329 0.941597369 0.913993294 0.890404664 0.939971812 0.938207212 0.908789645 0.883563775 0.908714295 0.863982862 0.864334144 0.879738127 0.924858347 0.890138136 0.865679379 0.872214704 0.951379851 0.92255883 148271358 chne Clavibacter michiganensis subsp. michiganensis NCPPB 382 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Clavibacter;species:Clavibacter michiganensis; 1.444957696 1.454981639 1.420257911 1.416032786 1.428409852 1.475273161 1.429190479 1.417243225 1.389289147 1.418411026 1.424773214 1.421678212 1.413962896 1.40954449 1.41253368 1.437142966 1.447792048 1.411655439 150006666 arsc Bacteroides vulgatus ATCC 8482 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides vulgatus; 0.881275807 0.831152486 0.814726288 0.827383427 0.875658185 0.812556714 0.851261967 0.800778117 0.814006427 0.839451249 0.811483816 325964095 amyA Arthrobacter phenanthrenivorans Sphe3 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter phenanthrenivorans; 0.841456671 0.795269205 0.819463831 0.840834391 0.821657335 0.840566077 0.800144934 33243251 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.093941892 1.044545796 1.044367473 1.135339569 1.00343275 1.037544383 1.005798943 1.054290738 1.108239026 1.011616798 1.017492222 1.03960574 0.984157869 0.993490466 0.968807751 1.005523274 1.088144731 1.049732614 23465129 ara Bifidobacterium longum NCC2705 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium longum; 1.024973103 0.956512048 0.994433794 0.983105415 0.976393492 0.981953915 0.952945992 0.957248724 0.982939017 1.011438461 0.937664033 0.97403684 0.957628523 0.979207543 0.978293875 1.009870537 0.975905075 0.976157452 288925922 pectinase (pectate_lyase) Prevotella buccae D17 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella buccae; 1.053836168 1.038046709 1.04370872 1.041704351 1.015885587 1.055094664 0.985911208 1.03810334 1.020887516 1.036592479 1.008629352 1.042524383 0.994289618 1.01655383 1.024960954 1.015524035 1.046209935 1.05343598 331021412 TIM Pseudomonas syringae pv. oryzae str. 1_6 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas coronafaciens; 0.922731693 0.920512895 0.910906031 0.92708906 0.962997393 0.906149163 0.875553663 0.877312096 0.916928138 0.862136888 0.859437242 0.949893112 0.889856336 0.886185708 0.83818015 0.921634054 0.906079095 0.849589786 190685706 phenol_oxidase Cellvibrio japonicus Ueda107 Carbon Cycling Carbon degradation Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio;species:Cellvibrio japonicus; 0.78192566 0.807227484 73541279 pcpe Ralstonia eutropha JMP134 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 1.005875923 0.982331842 0.995691646 1.027867913 0.997363181 1.017457307 0.993546739 1.014211051 1.041392339 0.990243941 0.975504896 0.971249821 0.995258765 0.959200126 0.946269776 0.949053592 1.026861561 1.000948426 306530698 xyla Dickeya dadantii 3937 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya dadantii; 1.051571449 1.098959465 1.049880689 1.125536298 1.06791566 1.044768829 1.048824764 1.009248302 1.084209749 1.105062636 1.098357505 1.074795812 1.0437632 1.024136066 1.037638861 1.008218967 1.070235352 1.061072353 85704032 pcag Roseovarius sp. 217 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 1.204910793 1.18696829 1.175856977 1.189365534 1.14210205 1.191094959 1.152898353 1.173349861 1.18327134 1.175029813 1.136452115 1.171497077 1.106526875 1.128910338 1.07468115 1.143488582 1.185913558 1.165732434 315499629 ppx Asticcacaulis excentricus CB 48 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis excentricus; 1.108940001 1.049947521 1.069638619 1.117587297 1.000643009 1.083514388 1.063044537 1.068263666 1.075728166 1.059308306 1.029067619 1.077286719 1.015161401 1.059772863 1.022402371 1.060509878 1.073327264 1.058377023 145568841 arsc Pseudomonas stutzeri A1501 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 0.93455193 0.906115728 0.901318387 0.951470118 0.944220489 0.948718576 0.943393771 0.972348856 0.941359791 0.91741751 0.883828466 0.967104725 0.933823359 0.855953283 0.868033257 0.91095924 0.9028517 0.921993378 295440742 Sir Burkholderia sp. CCGE1002 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 1.080587631 1.078686107 1.057482903 1.064516044 1.04705069 1.082347394 1.02506673 1.06342425 1.056019823 1.051404734 1.028821547 1.122407183 1.006393858 0.994204278 0.977019262 1.079248745 1.095014026 1.040866844 259417432 GAPDH_Calvin Silicibacter sp. TrichCH4B Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 0.967397251 0.927548211 0.952200903 0.999611234 0.95984862 0.999240552 0.897689012 0.954089768 1.04593343 0.971397785 0.941768583 0.973286757 0.958348777 0.967006823 0.961069569 0.925892883 1.02822632 0.981301034 163869159 GAPDH_Calvin Bartonella tribocorum CIP 105476 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bartonellaceae;genus:Bartonella;species:Bartonella tribocorum; 0.834719148 0.813943293 0.841904848 0.911458962 0.837213617 0.818933687 0.828875479 0.847254916 0.798648409 0.829795011 0.812591966 0.832361999 0.792193096 0.845605173 0.860093735 121588488 nifh Halorhodospira halophila SL1 Nitrogen Nitrogen fixation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Halorhodospira;species:Halorhodospira halophila; 0.902621994 0.883511997 0.90624611 0.93642102 0.905743151 0.884204165 0.892773604 0.856419826 0.907994246 0.898401209 0.882891165 0.888856263 0.865166522 0.87199585 0.802195991 0.826193213 0.910843448 0.905593696 20977656 nifh uncultured nitrogen-fixing bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.843890864 0.840155852 0.846634604 0.879700771 0.8603994 0.827152574 0.842155551 0.865938958 0.837321844 0.846018874 0.832724541 0.834011957 0.809614648 0.836339379 0.850973783 336009474 amyA Lachnospiraceae bacterium 3_1_57FAA_CT1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae; 0.829698854 0.856403704 377813106 nhh Burkholderia sp. YI23 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 1.032746429 1.015645032 1.004538993 1.051426806 0.984573519 1.043249739 1.022435767 1.029678202 1.014081337 1.027148288 0.990187093 1.010016318 0.965401542 1.003252811 0.921928249 0.97506002 1.025890213 1.044606377 83943988 linb Sulfitobacter sp. EE-36 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 1.27564731 1.257122489 1.250167053 1.276665938 1.233101485 1.273301694 1.242148044 1.277448678 1.234934744 1.246175399 1.226708591 1.255590219 1.202996792 1.219237795 1.192658553 1.244720128 1.251699851 1.232163536 149810237 phn Roseobacter sp. AzwK-3b Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 1.145425804 1.130687227 1.11826597 1.138256274 1.122131288 1.15756221 1.121646043 1.14336202 1.115015618 1.162799524 1.125891862 1.110361392 1.106267422 1.142190793 1.106353625 1.117217172 1.127842309 1.13151868 146338646 cellobiase Bradyrhizobium sp. ORS 278 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 1.111420209 1.077769877 1.055122084 1.06063795 1.021125779 1.092292464 1.008574791 1.034089623 1.093607536 1.088972199 1.057650655 1.05376887 1.037598767 1.083445102 1.010853268 1.04296662 1.077109547 1.070906389 328882621 acetylglucosaminidase Streptomyces venezuelae ATCC 10712 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces venezuelae; 0.802930741 0.80992094 0.838946917 0.881508122 0.805595922 0.813018286 0.810608435 0.77894113 0.828904615 251791344 alginase Dickeya zeae Ech1591 Carbon Cycling Carbon degradation Alginate superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya zeae; 0.84791264 0.877527388 0.800313314 0.849181289 0.884585983 0.812281237 0.865086667 0.856628898 0.834663557 0.825685369 0.826177318 0.880848017 0.841997463 117649371 endoglucanase Acidothermus cellulolyticus 11B Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Acidothermaceae;genus:Acidothermus;species:Acidothermus cellulolyticus; 1.010302516 1.039417779 1.043631504 1.004401779 1.043739484 1.122763164 1.028557833 1.029419169 1.016756821 1.055700426 1.029315231 0.99846547 1.031252629 1.048519115 1.000620357 1.001661482 1.026563988 1.067795923 186472841 poba Burkholderia phymatum STM815 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 1.104840655 1.077288204 1.094003354 1.107107986 1.075460041 1.081625 1.067629646 1.109976965 1.088698894 1.033224755 1.074013997 1.097747273 1.072607645 1.053538661 1.09393131 1.063250157 1.092920053 1.054259393 86566407 urec Frankia sp. CcI3 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 1.269973288 1.262314748 1.20487514 1.241197733 1.197316608 1.26144458 1.191423712 1.211266491 1.221101518 1.253067364 1.235899781 1.23327722 1.18372845 1.206738892 1.176739192 1.214101161 1.249790547 1.278092162 99083183 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 1.02758985 1.042722307 1.062596958 1.07565489 1.060389367 1.093944345 1.068802475 1.019275655 1.04216966 1.124109975 1.044414345 1.041723855 1.048665015 0.956443979 1.037098345 1.048031384 1.110140752 1.051534863 184197445 proO Burkholderia phymatum STM815 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 1.130522552 1.145487585 1.161369669 1.14121904 1.154013987 1.158173903 1.128647698 1.134313588 1.117136826 1.140760051 1.152065946 1.132632797 1.11975906 1.099229783 1.084043473 1.105422728 1.153229418 1.138745348 365804242 mdlc Streptomyces cattleya NRRL 8057 = DSM 46488 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces cattleya; 0.885334236 0.936365708 0.877523841 0.916673573 0.841725854 0.927206558 0.817111536 0.838515517 0.881636036 0.88452229 0.861836887 0.878822124 0.876656792 0.834334301 0.837829128 0.842081796 0.944857384 0.907781375 258558017 cda Nakamurella multipartita DSM 44233 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nakamurellaceae;genus:Nakamurella;species:Nakamurella multipartita; 0.948056609 0.98463399 0.954725314 0.996337937 0.991676403 1.014415651 0.985299045 0.980928318 0.944722036 0.976032442 0.977957954 0.985883274 0.997768887 0.976066728 0.954068109 1.002650478 0.970738916 0.976903199 154240614 mcra uncultured Methanobacteriales archaeon Carbon Cycling Methane Methanogenesis superkingdom:Archaea;phylum:Euryarchaeota;class:Methanobacteria;order:Methanobacteriales; 0.838837248 0.827324245 0.81499621 0.879326391 0.853194505 0.852430519 0.86526786 0.905115813 0.885526633 0.83539241 0.848492389 0.886397877 0.794363591 0.795270208 0.802350621 0.889556809 0.833402297 119499475 badh Neosartorya fischeri NRRL 181 Organic Remediation Aromatics Other aromatics superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 0.811871126 0.790789774 0.84981131 0.921380989 0.805645626 0.873388341 0.830086988 0.849186295 0.854063575 0.896461248 0.871236963 0.869226648 0.864253846 0.854144701 0.815348897 0.849324459 0.882561305 0.834221356 39837110 catechol Pseudomonas stutzeri Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.838624067 0.837242424 0.894570051 0.820757868 0.828108945 0.823611637 0.830288908 0.814821472 0.846842361 0.850301677 0.861307037 0.837431873 0.841470876 0.845689592 0.822775757 0.838496798 0.853286465 357080746 tfda Frankia sp. CN3 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 1.105465053 1.075824986 1.107812724 1.115195569 1.069469471 1.056097981 1.072475121 1.067648098 1.105943909 1.089214452 1.083875746 1.131669666 1.036925108 1.026248636 1.02559782 1.072007466 1.094532427 1.056999063 42541221 chitinase uncultured organism Carbon Cycling Carbon degradation Chitin 1.019122913 1.014918918 0.987434369 1.039268961 0.971968091 1.043659917 0.970724864 0.98327133 0.990941115 1.013450579 1.029165063 0.969974567 0.956421672 0.972363798 0.937181642 0.980147456 1.02168229 1.017004438 288925284 cda Prevotella buccae D17 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella buccae; 0.974882267 0.959137565 0.956643761 1.100195924 0.967937046 0.971482672 0.974009399 1.036803026 0.995221619 0.99713443 0.971509584 1.032732078 0.966651595 0.954897246 0.935633817 0.966540646 1.002471929 0.982546758 242779363 endopolygalacturonase_fungi Talaromyces stipitatus ATCC 10500 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 0.949114457 0.978700951 0.965711431 0.923015376 0.971040167 0.980475987 0.892011607 0.933918852 0.900725522 0.934950825 0.909246916 0.920039036 0.90853666 0.929669443 0.828446555 0.923934018 0.961446726 0.96319696 325483190 amyA Prevotella denticola CRIS 18C-A Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella denticola; 0.874046262 0.949823775 0.838635105 0.946573953 0.879168802 0.828043161 0.840045699 0.874593874 0.920175207 0.860190229 0.874080554 0.887001588 0.827522897 0.87305482 0.844301642 0.926860644 0.871402025 27351342 arsc Bradyrhizobium japonicum USDA 110 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 0.765044698 0.828972269 0.805743969 0.860209639 0.797142532 0.811091428 0.849435475 0.817124807 0.812499882 0.809770611 0.785554979 0.868944651 0.862314432 342805868 acetylglucosaminidase Vibrio scophthalmi LMG 19158 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio scophthalmi; 1.154382052 1.189080954 1.20926453 1.138097061 1.145823606 1.145976551 1.133655608 1.108007742 1.125655176 1.1784307 1.146784588 1.142150371 1.104078367 1.130629457 1.10911086 1.121141071 1.157112559 99030465 ppk uncultured bacterium Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria; 1.084105698 1.12649149 1.117849085 1.109501624 1.086952586 1.134108657 1.109719794 1.089871206 1.10635082 1.108443996 1.083797084 1.087742878 1.08798918 1.221679145 1.050013918 1.072284459 1.104937395 1.100778572 133920180 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.042852619 1.027765257 1.016008328 1.03792369 1.065593884 1.030464796 1.021224682 1.067745223 1.035870447 1.02402018 1.009649201 1.045825714 1.032880111 1.017502891 0.979169165 1.038639911 1.013854404 1.062278969 299006962 Rubisco_Alveolata Chromerida sp. RM11 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Eukaryota;phylum:Chromerida; 0.990140396 1.001870637 0.958037543 1.022471574 0.999029032 1.059295373 0.939918367 0.975863372 1.006785412 0.961102163 1.056833082 0.970797606 0.939170272 0.977813357 0.911574746 0.95471999 1.00385592 1.019472519 363651033 pme Tannerella sp. 6_1_58FAA_CT1 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Tannerella; 0.981612127 0.956203725 0.973567034 1.027011211 1.027056142 1.066019745 0.969084901 1.019715775 0.978568369 0.958834578 0.955563414 0.949396823 0.970552583 0.943644111 0.951060715 0.960637325 0.963062041 0.962196087 389873175 mauab Advenella kashmirensis WT001 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Advenella;species:Advenella kashmirensis; 0.875477262 0.836837743 0.909610106 0.878454131 0.832307688 0.887541372 0.848937573 0.86108456 0.863005775 0.862565132 0.858715874 0.849986123 0.843652482 0.846308403 0.876230082 0.876809315 3157544 nifh unidentified nitrogen-fixing bacteria Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.977677555 0.908229839 0.968335044 0.896082662 0.88667244 0.982793056 0.916924242 0.955238121 0.918442018 0.884182409 0.900618198 0.928419156 0.887339329 0.881734833 0.809771841 0.893099176 0.919073859 0.927648915 332975987 amyA Desmospora sp. 8437 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Thermoactinomycetaceae;genus:Desmospora; 1.254348472 1.230150031 1.221580005 1.241917707 1.181757183 1.252104786 1.207769941 1.240897771 1.225266595 1.22230303 1.200573775 1.206117096 1.160636369 1.193517426 1.170735346 1.214451507 1.238853103 1.244918321 134142967 alkb uncultured bacterium Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria; 1.153631275 1.115404577 0.996289474 1.09226022 1.087571578 0.964252268 1.066492476 1.065144604 1.141869729 1.008229439 1.008666211 1.096148612 1.06466814 0.943273804 0.978395617 1.000425093 1.034599096 1.064710846 409188157 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.162248709 1.151874474 1.173886187 1.164219509 1.149912511 1.180540898 1.136775087 1.184912521 1.152218766 1.143202618 1.14062415 1.154512246 1.138611127 1.127578998 1.101319931 1.143387234 1.186474205 1.178901557 307727440 tktA Burkholderia sp. CCGE1003 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 1.173000145 1.171422626 1.110186665 1.145655274 1.149789445 1.154090004 1.092626026 1.112526707 1.128213229 1.154674577 1.117768534 1.141666223 1.129795409 1.105182465 1.087085066 1.129051962 1.164066824 1.143422092 103487310 arsc Sphingopyxis alaskensis RB2256 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingopyxis;species:Sphingopyxis alaskensis; 0.928185953 0.923219675 0.887511981 0.949463006 0.906035149 0.903221367 0.9473144 0.993729282 0.940098611 0.877705506 0.859475788 0.907610142 0.854319813 0.823219615 0.919313487 0.889165336 0.917138934 0.936748756 349700426 nfsa_2 Gluconacetobacter europaeus LMG 18494 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter europaeus; 1.021496824 1.025376896 1.024768031 1.040534509 1.025799311 1.040312147 1.015415355 1.021466548 1.008769688 1.054713934 1.020824971 1.019934159 1.007784201 0.974334047 0.940549494 1.005546795 1.034149022 1.029625221 22652066 chitinase Serratia liquefaciens Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia; 0.801771489 0.80102299 118170744 cpna Mycobacterium smegmatis str. MC2 155 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 0.859426514 0.850858673 0.89053531 0.867782338 0.862953857 0.846067813 0.879262996 0.841519324 0.875765993 0.812875857 0.845820589 0.825782337 353464337 xylc Xanthomonas oryzae pv. oryzicola BLS256 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas oryzae; 0.855444406 0.826714814 0.857738204 0.872456838 0.799691648 0.837371847 0.828734669 0.841342083 381370290 cysJ Actinoplanes missouriensis 431 Sulfur Reduction NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes;species:Actinoplanes missouriensis; 1.033500954 0.96842376 1.032571041 1.06101491 1.026281866 1.03262895 1.050858252 1.056309412 1.031270089 1.027799723 0.978758708 0.992132668 0.962581468 0.978445209 0.901627152 0.965653812 1.024929869 1.026996914 219678276 tktA gamma proteobacterium NOR51-B Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Luminiphilus;species:Luminiphilus syltensis; 1.177271767 1.09818352 1.126223105 1.13400729 1.112482971 1.149583295 1.087501927 1.152021937 1.155699045 1.132177257 1.245229788 1.139694655 1.093439427 1.107261058 1.121390672 1.132940607 1.114723318 1.135835155 190700954 TIM Rhizobium etli CIAT 652 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 0.861892218 0.874213343 0.849385164 0.868489136 0.842305188 0.833498901 0.828647353 0.847733431 0.841287966 0.833304569 0.848502278 0.828703988 0.815587718 0.870017021 380682270 terc Phaeospirillum molischianum DSM 120 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Phaeospirillum;species:Phaeospirillum molischianum; 0.910143009 0.874303201 0.837971585 0.890649051 0.894538902 0.84629887 0.84492877 0.858453256 0.866949602 0.888257291 0.851423073 0.858100088 0.8506947 0.8535342 0.86125918 0.891259019 0.842610308 240009117 SoxC Methylobacterium extorquens AM1 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium extorquens; 0.782047398 0.860035313 0.874661272 0.882202418 0.89340653 0.856990426 0.834463607 0.803591025 0.844672867 0.800758827 0.821859613 0.875412439 0.832399114 210634504 acetylglucosaminidase Collinsella stercoris DSM 13279 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Collinsella;species:Collinsella stercoris; 0.933842019 1.005292172 0.847461342 1.080528769 0.848892363 0.833976864 0.887303649 0.820966529 1.01905009 0.861821803 365791987 dsra uncultured bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.827916646 1.053040477 0.871992203 1.030672342 0.936901775 0.866711506 0.960122075 0.816943904 0.94026613 0.836234286 0.819611701 1.023148594 0.892214196 0.863856971 0.814590415 0.881104146 0.876939284 0.913487113 407284084 bphF1 Thalassospira xiamenensis M-5 = DSM 17429 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Thalassospira;species:Thalassospira xiamenensis; 1.095720728 1.061601752 1.072087055 1.092632007 1.078029518 1.080350489 1.034791463 1.053987855 1.07869583 1.019675311 1.036101918 1.055580417 1.035277379 1.016136067 0.989478895 1.032987223 1.122436221 1.098734894 89512930 nifh uncultured nitrogen-fixing bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.979940887 0.929662774 0.932408331 1.003983997 0.981501254 0.960329482 0.989526932 1.005179126 0.999554479 0.932998527 0.950005427 0.9959846 0.957374592 0.885403424 0.896516044 0.91376323 0.954470776 0.964860754 407981711 mhpb Mycobacterium hassiacum DSM 44199 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium hassiacum; 0.814610123 0.860043872 0.828160769 0.883382749 0.824713454 0.877403371 0.862772808 0.837308881 0.796340803 0.881591824 0.848991337 0.821295458 0.84315945 0.879744954 268162373 endochitinase Photobacterium damselae subsp. damselae CIP 102761 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium damselae; 0.78932631 0.804821904 62084110 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.766896584 0.805298215 0.80288474 0.851318817 0.779635178 270333098 xylanase Prevotella bergensis DSM 17361 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella bergensis; 1.108860418 1.114933365 1.101796387 1.091128999 1.106469269 1.118630585 1.11351798 1.067839949 1.100884388 1.102756433 1.104320731 1.092762278 1.101843836 1.095517862 1.080628412 1.097243354 1.1119468 1.119022133 359778599 amyA Arthrobacter globiformis NBRC 12137 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter globiformis; 1.167900196 1.105242987 1.082851614 1.088833947 1.028287071 1.058656503 1.04265121 1.073432043 1.088008482 1.065507742 1.050679366 1.048973581 1.037568169 1.056855188 0.978948922 1.018022743 1.121717937 1.078773063 222080983 ben_bcla Agrobacterium radiobacter K84 virulence NA NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 0.828869743 0.895739427 374336696 endoglucanase Oceanimonas sp. GK1 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Oceanimonas; 0.916867252 0.883139965 0.886794291 0.884430956 0.828986377 0.853455858 0.865664085 0.859993866 0.858629692 0.82728063 0.83913585 0.900468594 0.925254768 71846207 TIM Dechloromonas aromatica RCB Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Dechloromonas;species:Dechloromonas aromatica; 0.982001855 0.95290069 0.947021511 0.975695486 0.956355292 0.95869304 0.932345325 1.006046418 0.98334272 0.961903267 0.965019275 0.981594842 0.907823707 0.920638876 0.961125865 0.978351892 0.980196839 0.953139803 227843357 amyA Mobiluncus mulieris ATCC 35243 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Mobiluncus;species:Mobiluncus mulieris; 0.791516086 0.812311956 0.821716679 0.889197811 0.879364573 0.870989751 18376631 ben_bcla Thauera aromatica virulence NA NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Thauera; 1.192989447 1.175732727 1.118747808 1.193446854 1.130225416 1.165275583 1.133153358 1.162144472 1.158500976 1.143722312 1.139287825 1.183998963 1.113922123 1.14411497 1.115687886 1.16272368 1.175015379 1.157132071 225791753 ppk Acidobacterium capsulatum ATCC 51196 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteria;order:Acidobacteriales;family:Acidobacteriaceae;genus:Acidobacterium;species:Acidobacterium capsulatum; 0.935091136 0.928015685 0.935439664 0.964235543 0.922283149 0.959194097 0.887437976 0.870025677 0.934476976 0.94694041 0.915859855 0.950999704 0.935885296 0.934904292 0.837752719 0.911325766 0.903167729 0.96316382 291070666 tehb Citrobacter youngae ATCC 29220 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter youngae; 0.848421433 0.83626739 0.815583563 0.803712015 0.815190137 0.812621312 0.812138604 0.834304732 171915122 amyA Verrucomicrobium spinosum DSM 4136 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobiaceae;genus:Verrucomicrobium;species:Verrucomicrobium spinosum; 0.869005498 0.85262863 0.850964556 0.829802653 0.842135498 0.827085681 0.79598479 0.854855854 0.863174335 0.843455753 0.834587119 0.8316596 0.887095208 0.913993321 169605081 protease_serine_fungi Phaeosphaeria nodorum SN15 Carbon Cycling Carbon degradation protein superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Phaeosphaeriaceae;genus:Phaeosphaeria;species:Phaeosphaeria nodorum; 0.889372243 0.919515759 0.90601531 0.937964368 0.949076661 0.964014257 0.930549979 0.898059618 0.915892756 0.876498999 0.889988172 0.946887893 0.910921233 0.900811545 0.892462879 0.883829415 0.916816935 0.961013076 289617373 protease_aspartate_fungi Sordaria macrospora Carbon Cycling Carbon degradation protein superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Sordaria; 0.917045697 0.909163178 0.894247215 0.939448416 0.89531175 0.942362518 0.908262986 0.910373918 0.892133661 0.875149042 0.889217629 0.928661759 0.883339844 0.919736262 0.899595118 0.937428414 0.925300237 0.88122738 269793890 ara Sanguibacter keddieii DSM 10542 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Sanguibacteraceae;genus:Sanguibacter;species:Sanguibacter keddieii; 1.035109791 1.075606107 0.96184674 1.075097778 0.994459759 1.029137431 0.943742038 0.993380688 1.003860608 1.010723018 0.919742967 1.017569924 0.946048401 0.952334038 0.909841717 0.988542477 1.058321306 1.057940128 260937557 atzb Vibrio orientalis CIP 102891 = ATCC 33934 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio orientalis; 1.104953728 1.097991737 1.085100495 1.113319718 1.076955537 1.058127798 1.057876706 1.077851757 1.118640845 1.085024619 1.087404669 1.088765528 1.062359352 1.059610256 1.124340106 1.042187134 1.088164282 1.073311487 359768372 mdlc Gordonia polyisoprenivorans NBRC 16320 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia polyisoprenivorans; 0.841607631 0.850155747 0.854757087 0.828583574 0.847476123 0.842350695 0.824128594 0.838532409 0.826452888 0.859093105 0.866604468 0.86529539 0.850551532 189206295 protease_aspartate_fungi Pyrenophora tritici-repentis Pt-1C-BFP Carbon Cycling Carbon degradation protein superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 0.809734456 0.858414202 0.818453551 0.864073401 0.839303695 0.852342139 0.836085011 0.808020835 0.826548335 0.813183467 0.841597401 0.832149025 0.790193766 0.86360683 373894572 urec Mucilaginibacter paludis DSM 18603 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Mucilaginibacter;species:Mucilaginibacter paludis; 0.833374071 0.869652794 0.870211057 0.874767931 0.857063553 0.871550006 0.845371842 0.912535739 0.879537219 0.827404132 0.812763368 0.852381757 0.826055723 0.803439515 0.936606412 0.924657211 37726837 dsra uncultured prokaryote Sulfur sulfite reduction NA 0.802939294 0.798692448 0.796357816 0.755817127 0.827795902 152986276 exochitinase Pseudomonas aeruginosa PA7 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 0.837251306 0.85704232 0.92351322 0.823202762 0.864646219 0.872981526 0.842137577 0.824237467 0.815338412 0.855951489 0.818955412 0.842769018 349701634 tktA Gluconacetobacter europaeus LMG 18494 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter europaeus; 0.834616716 0.846107918 0.849842741 0.847121678 0.80816778 0.84857758 0.82640713 0.834168812 0.866364341 0.811845432 0.788628598 0.862005504 0.789116468 77166278 PRK Nitrosococcus oceani ATCC 19707 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Nitrosococcus;species:Nitrosococcus oceani; 0.988518788 0.978288468 0.974869914 0.972527752 0.932351275 0.96957072 1.025870383 0.969177129 0.950878973 0.966530396 0.92816899 0.964940377 0.902389882 0.922830421 0.897234517 0.960064355 0.94236773 0.978589317 255593455 b_lactamase Ricinus communis Virulence Antibiotic resistance Degradation superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Streptophyta;order:Malpighiales;family:Euphorbiaceae;genus:Ricinus; 0.898891708 0.864935882 0.883469764 0.881030208 0.816130383 0.867430854 0.849853442 0.836390252 0.838925506 0.832844643 0.855013787 0.863352896 0.827064376 0.878031191 0.873478405 392952628 chnb Hydrocarboniphaga effusa AP103 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Sinobacteraceae;genus:Hydrocarboniphaga;species:Hydrocarboniphaga effusa; 0.893216142 0.880735522 0.86880122 0.881442093 0.92036102 0.911640508 0.895571707 0.86205962 0.894447316 0.920959028 0.914238415 0.87421821 0.830192542 0.785824587 0.85172417 0.838211054 0.896939061 340028619 ppx Paracoccus sp. TRP Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus; 1.068130273 1.086388148 1.057539325 1.082511711 1.071975281 1.080885839 1.056969304 1.06445011 1.070455796 1.048922865 1.047252329 1.060146175 1.058027457 0.992221548 1.008357944 1.027487355 1.071191466 1.039013475 83317030 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.103143598 1.078196234 1.066720959 1.034519131 1.033020843 1.035981033 1.019591896 1.031734785 1.037591314 1.037011763 1.054979749 1.022532987 1.01473053 1.009893107 1.017107587 1.030947913 1.078883784 1.058653339 37548730 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 1.072020619 1.045853333 1.071854238 1.048995645 1.047053082 1.075248618 0.995718635 1.064416022 1.056480705 1.062922819 1.060936809 1.059482262 1.062227185 1.061918987 1.006390472 1.037787401 1.049035444 1.050651757 313894942 fthfs Selenomonas sp. oral taxon 137 str. F0430 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas sp. oral taxon 137; 0.843548925 0.806243062 0.818772976 0.821666771 0.810805717 0.802959942 0.824173225 0.785023039 0.864225235 0.835933968 146406281 CsoSCA Bradyrhizobium sp. BTAi1 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.891134063 0.905496412 0.877811113 0.878734888 0.921096442 0.917367692 0.875610184 0.845713337 0.885099442 0.916205907 0.889223336 0.898833384 0.878415951 0.908983127 0.861381216 0.892386027 0.905843493 0.881986267 209519935 cysJ Burkholderia sp. H160 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 0.885180616 0.901345194 0.952903255 0.97417215 0.910664239 0.960674567 0.876030634 0.906841577 0.92292876 0.94349398 0.886273444 0.930232663 0.839948233 0.957701486 0.887414111 0.841506561 0.891928759 0.938506145 133910685 nira Saccharopolyspora erythraea NRRL 2338 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 1.097880424 1.10529052 1.077443338 1.075044893 1.080064276 1.106841057 1.074618414 1.088832936 1.091696676 1.082533693 1.062919532 1.06824399 1.070740174 1.040793316 1.026081121 1.053012636 1.109463567 1.092355779 45774390 urec Nitrosospira sp. NpAV Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosospira; 0.810970748 0.837334507 0.806472269 0.783439136 0.802046081 0.768537267 0.756191042 0.833917632 52631724 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.865051585 0.92593032 0.956008632 0.994820453 1.021475626 1.016841341 0.989768162 0.924863304 0.867301856 0.947798578 0.869536472 0.891871518 0.943480705 0.928521901 0.887011328 0.937853133 0.997410603 0.932942656 83361600 nosz Rhodobacter sphaeroides ATCC 17025 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 1.204218353 1.198322818 1.173290358 1.194873741 1.177314168 1.209305216 1.200905456 1.215383735 1.179277115 1.150753351 1.182523065 1.183018341 1.170002336 1.168206746 1.181288955 1.18035129 1.1798106 1.170893471 375266691 tktA Vibrio sp. EJY3 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 0.763399593 0.840612312 0.820056845 0.811518348 0.744928764 0.857747675 4760440 Dyp Thanatephorus cucumeris Organic Remediation halogenated compounds NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Cantharellales;family:Ceratobasidiaceae;genus:Thanatephorus; 0.966652543 1.02831243 0.909091504 0.942257857 1.031216191 1.0431022 0.92320059 0.897838261 0.933312785 0.960325956 0.933974657 0.942764162 0.979549132 0.965321699 0.982863418 0.925943597 1.013888073 0.961233591 163792493 nhh alpha proteobacterium BAL199 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 0.90381861 0.878689045 0.923695901 0.907382203 0.923098101 0.870758185 0.897355619 0.919722784 0.913821811 0.886082658 0.901580568 0.872882304 0.881884492 0.820582528 0.859220609 0.815966663 0.888651333 0.895615231 217415094 ppx Bifidobacterium angulatum DSM 20098 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium angulatum; 1.050149234 1.049467127 1.051988578 1.04885545 1.024839596 1.042224249 1.025826887 1.062439934 1.066643029 1.049978537 1.028927534 1.045685185 0.976320128 0.997578847 0.985668312 1.024924608 1.032276324 1.034463256 340774176 hyaluronidase Propionibacterium acnes SK182B-JCVI Carbon Cycling Carbon degradation hyaluronic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium;species:Propionibacterium acnes; 1.075697988 1.13668138 1.157841866 1.090682369 1.099159208 1.086941913 1.055711946 1.100763775 1.044462609 1.106228834 1.089916036 1.091682683 1.070450263 1.066195369 1.036044969 1.055149627 1.129213526 1.096437643 121535070 ppx Thermosinus carboxydivorans Nor1 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Thermosinus;species:Thermosinus carboxydivorans; 1.100754163 1.085249577 1.082993143 1.072263315 1.094184324 1.095467716 1.09337705 1.091834185 1.105901247 1.035796825 1.026352248 1.062804113 1.078244547 1.03250703 1.008345144 1.045160641 1.105064545 1.088241948 115423897 alginase Bordetella avium 197N Carbon Cycling Carbon degradation Alginate superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella avium; 1.189456783 1.171073351 1.187954514 1.206110233 1.185255319 1.215464565 1.203389987 1.229041346 1.18729448 1.137381186 1.189799299 1.179678334 1.158663519 1.149185534 1.16934034 1.181239519 1.175255781 1.135476238 103487238 ppx Sphingopyxis alaskensis RB2256 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingopyxis;species:Sphingopyxis alaskensis; 1.156759255 1.023551104 1.013341425 1.056147191 1.030740621 1.051132432 1.037083245 1.037320402 1.039085229 1.041277976 1.007918389 1.055939657 1.061314617 1.007451621 0.998206025 1.030537342 1.074981152 1.015081279 167647982 RgaE Caulobacter sp. K31 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 1.33087102 1.284131453 1.293651094 1.319507828 1.259749997 1.317746763 1.26687309 1.285242359 1.287169437 1.278645385 1.290807677 1.26316737 1.24895938 1.271989402 1.214309189 1.266928169 1.306983274 1.278258368 88184006 pec_Cdeg Chaetomium globosum CBS 148.51 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 0.862838788 0.893573853 0.869166544 0.926848217 0.859478704 0.851184928 0.856477895 0.852924072 0.925002205 0.890922063 0.855109737 0.874670877 0.822758408 0.875867637 0.938728159 68135529 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.805172647 0.806932196 0.823582844 0.828782878 0.810152075 0.811503223 0.804931702 0.821708358 0.874434343 328803686 chitinase Aeromonas veronii B565 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas veronii; 1.178920788 1.13373173 1.178728885 1.179481212 1.11660443 1.166439665 1.112069038 1.1788336 1.188751677 1.115930936 1.136667463 1.162930118 1.099491835 1.119012866 1.094017557 1.128245287 1.191618901 1.128651211 320550141 rubisco Haladaptatus paucihalophilus DX253 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haladaptatus;species:Haladaptatus paucihalophilus; 0.917475903 0.941540819 0.939931118 0.935446952 0.992251909 0.980057178 0.931800633 0.954875013 0.925430687 0.939457468 0.955187116 0.920585464 0.866468937 0.855495644 0.852308775 0.878682715 0.92976165 1.010386809 309813044 urec Dermacoccus sp. Ellin185 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dermacoccaceae;genus:Dermacoccus; 1.190181161 1.156619383 1.15150922 1.204955453 1.163833183 1.157008011 1.159971197 1.159491578 1.207837089 1.149059352 1.147941909 1.172705359 1.134671658 1.106745295 1.109533279 1.128364483 1.192369899 1.152246876 169611184 Sir Phaeosphaeria nodorum SN15 Sulfur sulfite reduction NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Phaeosphaeriaceae;genus:Parastagonospora;species:Parastagonospora nodorum; 0.962431021 0.931332106 0.918775366 0.972393214 0.892626112 0.897805784 0.923951494 0.935539438 0.978573606 0.929903431 0.916766658 0.916100678 0.89587632 0.922569337 0.861070811 0.966465454 0.973585344 0.958419249 182633339 tktA Beijerinckia indica subsp. indica ATCC 9039 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Beijerinckia;species:Beijerinckia indica; 0.883513942 0.967512498 0.847522144 0.877816709 0.873635057 0.961970558 0.835946326 0.908176402 0.896584923 0.90472228 0.851473835 0.877149078 0.849744505 0.885138091 0.836327768 0.890617551 0.879586703 0.960140798 305383390 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 1.098701843 1.067983479 1.026383239 1.068034883 1.022782808 1.018695814 1.027210189 1.016277625 1.069240334 1.066228521 0.995610901 1.05535107 0.975877956 1.011667379 1.050850948 1.01347015 1.079769107 1.088347467 283813245 acetylglucosaminidase Kribbella flavida DSM 17836 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Kribbella;species:Kribbella flavida; 0.770092009 0.857540705 0.816271572 0.796492953 0.805567786 0.831099557 0.884144982 359770661 cysJ Gordonia effusa NBRC 100432 Sulfur Reduction NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia effusa; 0.771968349 0.816973673 0.798314461 0.82409462 0.887976917 0.815402783 0.837467432 0.765603118 0.834466814 0.900917611 0.788275465 145282416 suc_CoA_red_DiC4HB Pyrobaculum arsenaticum DSM 13514 Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum arsenaticum; 0.961578687 0.89097338 0.935011523 0.963701926 0.887322986 0.925055666 0.873597976 0.940604667 0.976563738 0.900222063 0.897377347 0.915673523 0.893045244 0.855531023 0.880720428 0.877527001 0.966862035 0.906101806 374370290 xylg Cupriavidus basilensis OR16 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus basilensis; 0.949832316 0.919515382 0.90644259 0.949772432 0.924176345 0.898090416 0.893109943 0.909061568 0.923036604 0.930355272 0.937002348 0.933458617 0.908372994 0.86338701 0.851411752 0.90277903 0.952000266 0.890879304 389783605 B_lactamase_A Rhodanobacter spathiphylli B39 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Rhodanobacter;species:Rhodanobacter spathiphylli; 1.012201938 0.997852345 0.97997704 1.031923113 0.9879087 0.938814904 0.989312527 0.979078648 1.014419925 0.979406442 1.010182262 1.023879014 0.960298951 0.920208627 0.94330793 0.921432612 1.012648595 119952422 terc Arthrobacter aurescens TC1 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter aurescens; 0.802874046 0.789759967 0.835812135 0.792195362 348597873 amyA Oscillibacter valericigenes Sjm18-20 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Oscillospiraceae;genus:Oscillibacter;species:Oscillibacter valericigenes; 1.189537321 1.130895141 1.157451764 1.180696667 1.106114871 1.157956981 1.109350788 1.14269254 1.153192681 1.140048683 1.136435731 1.161360334 1.110819581 1.124623148 1.103338985 1.14189189 1.171147971 1.118653076 392406710 amyA Anaerobaculum mobile DSM 13181 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Synergistetes;class:Synergistia;order:Synergistales;family:Synergistaceae;genus:Anaerobaculum;species:Anaerobaculum mobile; 0.826211642 0.806479345 258647651 amyA Prevotella tannerae ATCC 51259 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Alloprevotella;species:Alloprevotella tannerae; 0.944232332 0.907763001 0.949843694 0.906531223 0.904428939 1.041046122 0.931248636 0.893977525 0.931605501 0.926424461 0.888796671 0.913282604 0.864279475 0.876394688 0.862234643 0.897618793 0.921983066 0.949023441 32815764 metc Delftia acidovorans Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia; 1.307156305 1.298173632 1.260071659 1.279020003 1.278751391 1.298064758 1.250044111 1.258732592 1.277243272 1.257236357 1.256242723 1.268297661 1.236082471 1.231859529 1.207414411 1.23020776 1.27935897 1.267191262 194292765 narg Cupriavidus taiwanensis LMG 19424 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus taiwanensis; 0.797888466 0.890912378 0.830637357 0.809044595 0.813818728 0.842923871 0.817331542 0.81452798 0.845046508 0.855711639 330430166 terc Pusillimonas sp. T7-7 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Pusillimonas; 0.832818313 0.855508504 0.818811343 0.897495487 0.857588294 0.835603063 0.862487718 0.829964784 0.867438216 0.868351933 0.874165732 0.893354345 0.828045079 161161894 rgl Sorangium cellulosum 'So ce 56' Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 0.964181348 0.963059052 0.952033532 0.996368888 0.965550284 0.985916501 0.988497916 0.997340443 0.968153022 0.938589418 0.970177593 0.989734977 0.939569955 0.957101131 0.904039824 0.953532308 0.974200601 0.996686547 374334566 Sir Oceanimonas sp. GK1 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Oceanimonas; 1.014090346 1.007221507 1.027726065 0.999446867 0.993794737 0.991272178 1.027157489 1.025887092 1.021511283 0.961954008 0.976392599 1.009569406 0.986148503 0.945070428 0.946899887 0.910888977 0.970293535 1.007483699 49532025 ppx Acinetobacter sp. ADP1 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 1.170741751 1.081619336 1.116883777 1.115253541 1.154112291 1.219162224 1.141991494 1.053984703 1.057006034 1.156495614 1.133006264 1.049975679 1.100860172 1.145566484 1.129995264 1.119321742 1.155616608 1.134733343 365872374 cutinase Mycobacterium massiliense CCUG 48898 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium abscessus; 0.823018668 0.776090555 0.879668143 0.860986675 0.81279819 0.866375739 0.825424153 0.797211705 0.805607996 0.773456404 0.796547444 0.848222283 307353038 arsc Methanoplanus petrolearius DSM 11571 Metal Homeostasis Arsenic Detoxification superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;family:Methanomicrobiaceae;genus:Methanoplanus;species:Methanoplanus petrolearius; 0.877758472 0.908240307 0.836783102 0.921393789 0.848976916 0.882937819 0.928159676 0.858424616 0.889405128 0.923283442 0.85334258 0.82196778 0.83290147 0.881956378 0.873732332 225024493 nfsa_2 Eikenella corrodens ATCC 23834 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Eikenella;species:Eikenella corrodens; 0.966935344 0.991930803 1.035037515 1.006361018 1.011810829 1.049530635 1.030617107 0.988245247 0.990632614 1.016077128 1.039832616 1.011468635 0.977957912 0.997488888 1.016348923 1.074290585 1.014634843 0.991830846 315411639 cellobiase Micromonospora sp. L5 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Micromonospora; 1.086393443 1.013649389 1.048103224 1.019082716 0.96613323 0.989009572 0.953392384 1.00395639 1.025332648 0.971394418 0.974623001 0.983638992 0.981836507 0.974150178 0.98846814 0.982470994 1.021040027 1.000054823 371953945 Sir Singulisphaera acidiphila DSM 18658 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Singulisphaera;species:Singulisphaera acidiphila; 0.859999082 0.903036978 0.851172129 0.877954433 0.896510955 0.838772487 0.889350766 0.850625962 0.876972462 0.876527484 0.864322215 0.829479167 167031918 cysJ Pseudomonas putida GB-1 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 0.889466939 0.844073038 0.83672753 0.847724531 0.849273996 0.880889069 0.865656999 0.881423205 0.856395186 0.882086743 0.851656668 0.844941241 0.848861947 0.920773808 116620453 CsoS1_CcmK Candidatus Solibacter usitatus Ellin6076 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 0.895686853 0.945191378 0.924505622 0.925572644 0.907569196 0.955723244 0.909440362 0.898526674 0.892240548 0.968715792 0.912768559 0.90042615 0.915487728 0.931804127 0.913839838 0.930184176 0.919620012 0.93752503 398037641 badh Caulobacter sp. AP07 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 0.952829186 0.950826109 0.872254035 0.943734751 0.984139064 0.898467879 0.924592517 0.93542772 0.911322364 0.960658917 0.903344669 0.862250837 0.946469605 0.900152446 0.891797048 0.94683385 0.945715303 224818645 soxY Thioalkalivibrio sp. K90mix Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio; 1.004275277 0.971636829 0.951549474 1.04281085 1.083026848 0.983553134 1.058513384 0.961103993 0.987431424 0.959048833 0.948724704 1.010872247 0.967951896 0.918297496 0.921072192 0.926027572 0.996765169 0.96169812 299061533 arylest Erwinia billingiae Eb661 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia billingiae; 1.056386348 1.151684571 1.04844753 1.053091743 1.063880694 1.066792581 1.024757273 1.023301551 1.070851726 1.005280365 1.021511616 1.019721382 1.014235629 0.990359185 1.032887707 1.000269601 1.058952131 1.059328448 271966853 phytase Streptosporangium roseum DSM 43021 Phosphorus Phytic acid hydrolysis NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 0.93870923 0.94529552 0.8980563 0.956670261 0.872080126 0.957930151 0.871607941 0.874657628 0.897486806 0.908821731 0.852237797 0.921634524 0.877671157 0.859047424 0.854806369 0.881203951 0.927260203 0.936173784 77862464 mcra uncultured archaeon Carbon Cycling Methane Methanogenesis superkingdom:Archaea; 0.767198897 0.969319447 0.884124828 1.06713375 1.007299367 0.948737905 0.883320688 0.878150515 1.08764594 1.102775832 0.915731934 0.939464431 0.916938764 196482322 tfda uncultured bacterium Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria; 0.853447454 0.866961191 0.880430695 0.978613108 0.845769889 0.885990638 0.871978275 1.114301064 0.966596133 0.954353408 0.90371567 0.866327296 0.999403579 0.918773762 1.091593991 1.040262777 1.030444695 1.032579445 197710679 cellobiase Streptomyces sviceus ATCC 29083 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 1.159001521 1.16755068 1.139334688 1.205618101 1.209508225 1.18134721 1.153416867 1.116327483 1.162278607 1.133240926 1.156246063 1.169249256 1.15321552 1.095965098 1.104999949 1.11469561 1.166896411 1.121951221 56678511 FBP_aldolase Ruegeria pomeroyi DSS-3 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 0.839627453 0.842006242 0.848686115 0.802114046 0.836470596 0.811047879 0.850008914 0.912372551 357403379 gdh Streptomyces cattleya NRRL 8057 = DSM 46488 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces cattleya; 1.16027756 1.175944863 1.171182381 1.170407395 1.160920362 1.190243261 1.150365863 1.142585543 1.149394473 1.13486789 1.135389724 1.13443316 1.148639956 1.121349789 1.1341654 1.15334389 1.21937831 1.172266397 291295379 terc Meiothermus ruber DSM 1279 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Meiothermus;species:Meiothermus ruber; 0.910654251 0.829814733 0.897015418 0.895163102 0.88512702 0.887721225 0.842270295 0.866569333 0.815751089 0.904707331 0.867922623 0.831534621 0.836386922 0.83211314 0.815919511 0.826337028 110678828 soxY Roseobacter denitrificans OCh 114 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter denitrificans; 1.085041628 1.071737129 1.002935031 1.013323228 0.972035534 320594232 chnb Grosmannia clavigera kw1407 Organic Remediation Other Hydrocarbons NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Ophiostomatales;family:Ophiostomataceae;genus:Grosmannia;species:Grosmannia clavigera; 0.792447713 0.828235405 0.864337962 0.7946229 0.829618894 0.807571673 385763586 dsra uncultured bacterium ws020C1 Sulfur sulfite reduction NA superkingdom:Bacteria; 1.251677402 1.21599333 1.187509363 1.199463802 1.146200316 1.217201541 1.146345233 1.17620885 1.199396836 1.189122711 1.179408745 1.177153565 1.138338151 1.140463908 1.099935054 1.150698136 1.223241291 1.205192401 371590395 ppx Rahnella aquatilis CIP 78.65 = ATCC 33071 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Rahnella;species:Rahnella aquatilis; 0.839099878 0.803843483 0.822361292 0.814834575 0.824900058 0.820237643 0.83128404 375080882 rgl Paenibacillus sp. Aloe-11 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 0.944978797 0.949099189 0.938005889 0.960233267 0.94147329 0.89812774 0.889944115 0.914135024 0.950513849 0.947236084 0.909980714 0.908292932 0.835395771 0.871865053 0.889222481 0.845013244 0.967557086 0.985515888 386775365 amyA Brachybacterium paraconglomeratum LC44 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dermabacteraceae;genus:Brachybacterium;species:Brachybacterium paraconglomeratum; 1.080169383 1.07604354 1.138948606 1.086502384 1.051950157 1.124158904 1.011180076 1.078200699 1.053154599 1.091089837 1.058722851 1.031213388 1.01599323 1.073818236 1.035777209 1.040238532 1.076461185 1.088856172 239933495 urec Streptomyces ghanaensis ATCC 14672 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces ghanaensis; 1.318364014 1.327597557 1.285032083 1.30617661 1.311439433 1.320323885 1.301737168 1.307002758 1.298610545 1.271815643 1.283367829 1.313288782 1.241611259 1.250988648 1.235270343 1.261199317 1.300550202 1.302624045 114327573 Sir Granulibacter bethesdensis CGDNIH1 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Granulibacter;species:Granulibacter bethesdensis; 0.949200061 0.948610438 0.866065401 0.930389301 0.953991167 0.934816909 0.893362175 0.883471284 0.876852443 0.912737812 0.954448113 0.91349238 0.918619193 0.912611017 0.891230792 0.902965614 0.914274856 0.935466321 70731214 bend Pseudomonas fluorescens Pf-5 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 1.087113009 1.096286881 1.095977223 1.097282832 1.005277256 1.117447327 1.038403904 1.0886305 1.079403176 1.089470325 1.020876422 1.03740951 0.938297672 1.086015782 1.004654452 1.106524477 1.118296818 1.08120191 378950951 napa Pseudomonas fluorescens F113 Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 0.82533522 0.820894064 0.889711395 0.809961707 0.81074987 0.859734647 0.84884784 0.824595055 0.885468527 0.859971707 0.890900211 0.835795171 3157590 nifh unidentified nitrogen-fixing bacteria Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.820777292 0.827613484 212662418 RgaE Bacteroides dorei DSM 17855 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides dorei; 1.066931311 1.032022887 1.058709692 1.003384467 1.082546511 1.10946592 1.085579 1.010588216 1.013387606 1.091081287 1.052061537 1.034803182 1.043741018 1.07289034 1.117978886 1.071297623 1.065611175 1.099787146 213524230 cellobiase Bifidobacterium longum subsp. infantis ATCC 15697 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium longum; 1.375190806 1.386682633 1.343222633 1.326736464 1.358163618 1.384252669 1.303374008 1.311652922 1.29605936 1.32189048 1.327534868 1.320795338 1.343185586 1.321043267 1.308344619 1.321711519 1.365656473 1.347380135 161898386 phytase Buttiauxella sp. GC21 Phosphorus Phytic acid hydrolysis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Buttiauxella; 0.938330856 0.962667017 0.885254677 0.914520927 0.939360312 0.96814299 0.897923195 0.93039807 0.94271382 0.926680224 0.935644524 0.894105437 0.842678743 0.907514833 0.873028082 0.853665232 0.951291619 1.001858895 12667600 dsra uncultured sulfate-reducing bacterium UMTRAdsr857-10 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 1.077274999 1.120181822 1.067440389 1.100433107 1.06000104 1.122339894 1.055029427 1.076755479 1.062834081 1.05818005 1.05362493 1.062845865 1.088575845 1.070234814 1.021064494 1.085023889 1.129096578 1.08514423 189202616 rgl Pyrenophora tritici-repentis Pt-1C-BFP Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 0.868284383 0.860848515 0.85519332 0.888659774 0.832419384 0.809288419 0.808726187 0.836335488 0.921602251 0.893976281 0.86760827 0.87573756 0.846491626 0.834353288 0.848494354 0.898465079 0.880930225 83316552 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.954044461 0.928985914 0.942005019 0.988140997 0.966589551 0.946725549 0.963957815 1.011600075 0.955191867 0.927478676 0.896714374 0.934380753 0.969487577 0.945045513 0.944186045 0.948320034 0.94090994 0.938595188 2258311 mmox Methylocella palustris Carbon Cycling Methane Methane oxidation superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Methylocella; 0.86468979 0.816655209 0.829981411 0.832965808 0.845097801 0.8214911 0.821805514 0.811292874 0.830971038 0.814612582 0.832453671 302896818 endopolygalacturonase_fungi Nectria haematococca mpVI 77-13-4 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Nectria;species:Nectria haematococca; 0.929748971 0.939468604 0.945992263 0.974424512 0.927065064 0.944283308 0.925838032 0.953425452 0.945984926 0.922230591 0.933281202 0.916967358 0.910195588 0.914360541 0.902090645 0.89422425 0.951930144 0.916576141 112821555 arsc Sphingomonas sp. KA1 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 0.793297718 0.783677905 0.749675431 0.832700869 88643147 dsrB uncultured prokaryote Sulfur sulfite reduction NA 0.993046343 0.941556223 0.954956514 1.009208963 0.946103528 0.957388799 0.976971615 1.03344391 0.942680097 0.93555167 0.960035248 0.953813671 0.916606227 0.908889886 0.895414997 0.902212003 0.938224274 0.937405868 119373932 tehb Paracoccus denitrificans PD1222 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 0.872890463 0.882471832 0.832422103 0.901735259 0.849165746 0.873573432 0.822097476 0.822473263 0.884086031 0.878927721 0.832680882 0.880146844 359424574 catechol Gordonia amarae NBRC 15530 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia amarae; 1.165635677 1.153857034 1.117996796 1.177586677 1.126553547 1.210335264 1.146704172 1.157430891 1.142003901 1.152462379 1.158795405 1.151817409 1.132246507 1.137915622 1.116664521 1.167938567 1.194968055 1.162824464 160934490 ara Clostridium leptum DSM 753 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium leptum; 1.005391795 1.012185863 1.039816987 1.006719453 1.033548434 1.045331786 1.012875106 1.007147266 1.032560598 1.019283077 1.03886003 1.03337676 1.03717604 0.995986183 1.016523969 1.005767921 1.019384125 1.028275464 51245731 arsc Desulfotalea psychrophila LSv54 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobulbaceae;genus:Desulfotalea;species:Desulfotalea psychrophila; 0.826567657 0.833191641 0.807008608 0.819547858 0.764739519 0.85158672 338752771 pgk Acetobacter tropicalis NBRC 101654 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acetobacter;species:Acetobacter tropicalis; 0.806509252 0.84729005 0.840999012 0.85584012 0.82518033 0.837211934 0.844135955 0.797235829 0.844207609 0.83475484 0.819538493 0.80713389 0.847517228 359425729 pcag Gordonia amarae NBRC 15530 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia amarae; 1.101569905 1.073084478 1.045561394 1.090309788 1.04874592 1.101796185 1.035710789 1.081089062 1.120166344 1.079329294 1.052500088 1.083084732 1.033635743 1.080514964 1.04225584 1.072512967 1.089672995 1.0548162 339017783 ppx Acetobacter tropicalis NBRC 101654 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acetobacter;species:Acetobacter tropicalis; 1.28466744 1.221937627 1.269459285 1.286246715 1.270627923 1.295132949 1.277304031 1.275222919 1.261898763 1.258334544 1.278000812 1.277196601 1.226212983 1.222772402 1.213354636 1.236893757 1.280722479 1.270947891 209401864 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.07033719 1.036046484 1.045717817 1.094681061 0.989722181 1.042992207 1.022771164 1.066102901 1.061112484 1.042555667 1.032915611 1.0793155 1.021354426 1.04799084 1.027222981 1.091177366 1.077843918 1.064112553 89145066 ppk Microbacterium aurum Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Microbacterium; 0.763413229 0.801896487 296846874 rgl Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Nocardiopsis;species:Nocardiopsis dassonvillei; 1.115124712 1.067165973 1.101780898 1.122904804 1.088828523 1.100797193 1.111412271 1.137981858 1.079159913 1.080435951 1.091941753 1.116498914 1.103941835 1.038883774 1.079773851 1.071668281 1.137316389 1.087319392 85697819 PRI Nitrobacter sp. Nb-311A Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter; 1.267620474 1.172878745 1.17348252 1.177515914 1.200433001 1.168124485 1.149493819 1.202425032 1.179351593 1.150770459 1.150349312 1.199599309 1.124370086 1.085293769 1.078990505 1.120973027 1.171329338 1.121305202 145596914 chitinase Salinispora tropica CNB-440 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora tropica; 0.886433556 0.903228164 0.872438189 0.914396696 0.91052761 0.923505217 0.84929807 0.839967657 0.880331479 0.916369541 0.856008225 0.841640413 0.874495482 0.813646717 0.919454605 0.903610808 330827820 amyA Aeromonas veronii B565 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas veronii; 1.031938461 1.005105684 0.928117597 1.039739352 0.925021599 0.953547966 0.978964928 1.012613697 1.022495549 0.960380742 0.926418469 0.988738158 0.906077547 0.949932838 0.869126251 0.894257078 1.002790369 1.018632339 148656574 cda Roseiflexus sp. RS-1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus; 1.047470141 1.117871558 1.047296925 1.059766427 1.055120197 1.089067063 1.039440157 1.01927224 1.04152098 1.059452979 1.025994345 1.049035305 1.040202544 1.036518156 1.021754469 1.046046627 1.050575946 1.079311387 269125457 mer Thermomonospora curvata DSM 43183 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Thermomonosporaceae;genus:Thermomonospora;species:Thermomonospora curvata; 0.983350574 0.985260174 0.963411132 1.00501966 0.952627061 0.998814651 0.94471473 0.930609926 0.910193325 0.959548719 0.927806742 0.96323536 0.953468132 0.939859627 0.922821153 0.938634122 0.972430796 0.974400217 393179412 amyA Rhizobium leguminosarum bv. trifolii WSM2297 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 0.813024675 0.822683666 113903489 nbac Salinispora tropica CNB-440 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora tropica; 0.810843893 0.79542925 0.83419843 0.832991569 0.850959414 0.810265188 0.820382248 0.838116894 0.841464596 0.830538481 0.869073309 0.843402356 209500984 mdlc Burkholderia sp. H160 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 1.176037858 0.925753378 0.83280656 0.774620621 0.795907302 0.86082551 310817436 mannanase Stigmatella aurantiaca DW4/3-1 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 1.246764176 1.227858205 1.204556817 1.205842306 1.188294572 1.232856256 1.191300112 1.20158006 1.184362904 1.200706335 1.203044108 1.214300167 1.186292947 1.196906251 1.156158518 1.208800088 1.219611023 1.226259488 381150549 urec Methylomicrobium album BG8 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylomicrobium;species:Methylomicrobium album; 0.926646182 0.908782278 0.871143391 1.004933386 0.918533182 0.875492582 0.875678157 0.918726618 0.912113207 0.899382935 0.886895778 0.886844373 0.924090788 0.866565297 0.903274158 0.890232109 0.999520595 0.941537716 312174600 mmox uncultured methanotrophic bacterium Carbon Cycling Methane Methane oxidation superkingdom:Bacteria; 0.910794865 0.904642999 0.925393004 0.913081926 0.86459557 0.930789416 0.865401739 0.843406555 0.915183133 0.901191921 0.855064527 0.900814696 0.86391263 0.86707382 0.869817052 0.92640291 0.916118676 46371039 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.002479275 0.994390923 0.957979251 1.015200155 0.931334886 0.992788331 0.974292242 0.995598447 1.0032024 0.970954213 0.971383718 0.983262366 0.922951841 0.960999967 0.917710584 0.985794417 0.989149252 0.99016547 379710264 chrr Nocardia cyriacigeorgica GUH-2 Metal Homeostasis Chromium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia cyriacigeorgica; 1.400078387 1.37376924 1.364956888 1.341299877 1.352245331 1.378979817 1.323284104 1.345847956 1.344106183 1.350472729 1.333882781 1.411774665 1.308626565 1.332933462 1.315272696 1.339363699 1.365150727 1.357118397 210068491 phospholipase_A2_fungi Penicillium marneffei ATCC 18224 Carbon Cycling Carbon degradation Phospholipids superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 0.871682806 0.849302682 0.828474062 0.907406655 0.804660248 0.852121522 0.858811604 0.856399333 0.835835899 0.844254959 0.866957681 0.862642677 0.86322122 365850635 CsoS1_CcmK Yokenella regensburgei ATCC 43003 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yokenella;species:Yokenella regensburgei; 0.910574005 0.933178035 0.881891022 0.868109314 0.889120289 0.919658812 0.903078734 0.989289222 0.889196151 0.883106197 0.86240487 0.877783956 0.867721962 0.868248581 0.792963033 0.829621581 0.874666794 0.951914988 84392203 atzb Oceanicola batsensis HTCC2597 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola batsensis; 1.328974265 1.298202759 1.294215496 1.285634775 1.291325019 1.316732586 1.249943534 1.254450923 1.301867606 1.253567413 1.276674434 1.281544616 1.280540724 1.24891625 1.240936475 1.265166127 1.338866932 1.271480333 134100386 acetylglucosaminidase Saccharopolyspora erythraea NRRL 2338 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 0.973205918 0.948774899 0.931855046 0.997897303 0.935074654 0.974477399 0.981800061 0.932389569 0.985481782 0.944152877 0.941227938 1.012841695 0.948818781 0.919270222 0.884533699 0.99649388 0.99318854 0.926683692 260419698 fthfs Citreicella sp. SE45 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Citreicella; 1.387429822 1.337815937 1.351522336 1.370609722 1.327612975 1.385813243 1.343982321 1.362102542 1.341396051 1.335484259 1.344276797 1.34383984 1.318193983 1.29550587 1.298255336 1.334613116 1.366610156 1.338243814 93354115 xylj Cupriavidus metallidurans CH34 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 0.840399597 0.857637624 0.805469986 0.850189074 0.825371081 0.781957407 0.824445402 0.814940807 0.846678564 0.852380071 77382551 one_ring_12diox Pseudomonas fluorescens PfO-1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 1.057219137 1.057611633 1.062686974 1.053025914 1.055405743 1.107026693 1.076946211 1.046716498 1.034566355 1.109388903 1.097663423 1.040215055 1.05085093 1.079340939 0.992783852 1.023235678 1.049937165 1.070472318 159490610 actin_Viridiplantae Chlamydomonas reinhardtii Other Phylogenetic NA superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Chlorophyceae;order:Chlamydomonadales;family:Chlamydomonadaceae;genus:Chlamydomonas; 0.96240974 0.95112932 0.923632542 0.964503968 0.952664063 0.952899865 0.943981683 0.925546159 0.967547661 0.955280118 0.937352704 0.934521067 0.928044992 0.909070479 0.85941673 0.884697641 0.937860063 0.990201545 377527560 cysJ Gordonia sputi NBRC 100414 Sulfur Reduction NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia sputi; 0.804327495 0.881779251 359788925 tktA Mesorhizobium alhagi CCNWXJ12-2 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium alhagi; 0.820461836 0.824800134 0.784757616 0.855816102 86742346 amyA Frankia sp. CcI3 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 0.938964532 0.908907182 0.897616727 0.910671059 0.873714103 0.889736018 0.900558196 0.85274094 0.930399597 0.904532978 0.852790066 0.867301641 0.855602034 0.91578561 0.885652875 0.859930097 0.923974932 0.915757489 158438405 trzn Clostridium bolteae ATCC BAA-613 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium bolteae; 0.944468496 0.939768797 0.924651405 0.939131014 0.927467325 0.939993904 0.853048539 0.862246027 0.858670652 0.863998536 0.831986906 0.908939263 0.871231418 0.852790751 0.834797429 0.929041449 0.914836491 0.930201787 326947328 suc_CoA_red_DiC4HB Thermoproteus uzoniensis 768-20 Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Thermoproteus;species:Thermoproteus uzoniensis; 0.970556405 0.958340458 0.975971331 0.968953365 0.90223366 0.957507131 0.932026426 0.92963305 0.990523979 0.972889392 0.916230408 0.986312303 0.910466855 0.925749048 0.889714811 0.919599209 0.980983921 0.973736221 323364890 nifh uncultured microorganism Nitrogen Nitrogen fixation NA 0.86127627 0.989140636 0.84067697 0.843878459 0.834651855 0.855568825 0.841212968 0.856369051 0.787824227 0.801001746 0.872955868 0.827018827 0.84771197 0.873384654 269127805 amyA Thermomonospora curvata DSM 43183 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Thermomonosporaceae;genus:Thermomonospora;species:Thermomonospora curvata; 1.324989968 1.30709883 1.330917784 1.323244201 1.332420558 1.331545108 1.317602718 1.313760247 1.309876271 1.318308199 1.315088021 1.33304566 1.301179635 1.317474812 1.32096169 1.347170778 1.301066032 1.282335929 380476930 badh Colletotrichum higginsianum Organic Remediation Aromatics Other aromatics superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Glomerellaceae;genus:Colletotrichum; 0.861342421 0.92149078 0.824940004 0.853618837 0.851246997 0.83907406 0.850501326 0.872107741 0.87245086 0.916519499 0.833003485 0.84549688 0.928456674 0.865434745 0.851546192 0.864668255 0.919104327 27379682 nira Bradyrhizobium japonicum USDA 110 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 0.911992748 0.927566842 0.922210057 0.891199542 0.961613183 0.925918594 0.976145964 0.953573923 0.930436303 0.93779916 0.942014157 0.944167337 0.898205726 0.916086951 0.88893621 0.885707531 0.925792227 0.947772313 375082744 amyA Thermococcus litoralis DSM 5473 Carbon Cycling Carbon degradation Starch superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Thermococcus;species:Thermococcus litoralis; 1.076001826 1.071020801 1.155243729 1.133947325 1.107810146 1.049786715 1.075222395 1.095559667 1.086939658 1.096284043 1.074958012 1.129421344 1.049628715 1.075354355 1.121615406 1.076446484 1.134271287 1.123931855 88778030 endochitinase Reinekea sp. MED297 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Reinekea;species:Reinekea blandensis; 0.876633035 0.93054212 0.919495855 0.969084707 1.03051778 0.952662585 1.011947835 0.999756254 0.986747809 0.930024081 1.022893821 1.018229929 0.979955645 0.924349747 0.996687455 0.979297642 0.92980078 0.90787831 147847559 CsoS1_CcmK Synechococcus sp. WH 7803 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 0.956091833 0.941366076 0.999765894 0.985904687 0.921995142 0.93409749 0.87366509 0.900451693 0.940138828 0.949615984 0.95549208 0.971458497 0.915648863 0.918004913 0.932673841 0.888816533 0.970601652 0.936694766 192286755 nitrilase Rhodopseudomonas palustris TIE-1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 0.926562381 0.975316363 0.885509073 0.931287739 0.929744603 0.941398727 0.900050974 0.92848401 0.888097181 0.933755833 0.873266837 0.925591766 0.920923605 0.940253971 0.881629301 0.892271911 0.945065951 0.96250649 86139512 one_ring_12diox Roseobacter sp. MED193 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 0.87376189 0.858391618 0.842210516 0.858733663 0.869884034 0.87753045 0.849158765 0.850255274 0.869474639 0.893793651 0.864271675 0.850492277 0.83030374 0.831846789 0.890625812 0.896636983 221204231 bphd Burkholderia multivorans CGD2 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 1.432880621 1.416797011 1.389188789 1.400173006 1.362554861 1.394508863 1.327697396 1.308264311 1.390185273 1.383365216 1.387997644 1.398133808 1.356442379 1.335169422 1.320524424 1.337819359 1.405330274 1.372275356 1395141 one_ring_23diox Acinetobacter sp. YAA Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 0.942128145 0.933801775 0.913139742 0.976739249 0.888568511 0.888333239 0.922228354 0.957650104 0.889450998 0.903757357 0.882604215 0.93230611 0.873064001 0.86123268 0.900317392 0.954650567 0.918614565 92115334 mer Chromohalobacter salexigens DSM 3043 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Chromohalobacter;species:Chromohalobacter salexigens; 0.836039537 0.837686984 0.838068737 0.856143768 0.831033026 0.803039139 0.813427408 0.86213213 0.857657331 0.880309519 90420018 PRK Aurantimonas manganoxydans SI85-9A1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Aurantimonas;species:Aurantimonas manganoxydans; 1.335268835 1.333690698 1.30395951 1.293537004 1.305150123 1.341708305 1.297329259 1.306070622 1.28819862 1.289093412 1.306181133 1.297804332 1.28974295 1.284286041 1.303840269 1.316449187 1.316719876 1.307980827 342816261 cmua Vibrio orientalis CIP 102891 = ATCC 33934 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio orientalis; 0.838190765 0.838068287 0.840371279 0.833100744 0.811692274 0.845643712 0.797413404 0.790516655 0.90135905 0.857220707 380733754 pchcf Corallococcus coralloides DSM 2259 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Corallococcus;species:Corallococcus coralloides; 1.095298311 1.145991639 1.043607982 1.113569627 1.105684244 1.128950837 1.079642279 1.078250504 1.090868567 1.121124128 1.051520782 1.066140371 1.075007176 1.091726972 1.022157313 1.099106155 1.112104503 1.126271275 239814984 amyA Variovorax paradoxus S110 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 0.997107822 0.943794992 1.006590715 0.962131393 0.992628354 0.98046814 1.009659997 0.977833547 1.000513339 0.966219894 0.966597881 1.019977118 0.931604865 0.926407659 0.931557574 0.952479329 1.001050096 1.009152753 390943548 nosz Belliella baltica DSM 15883 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cyclobacteriaceae;genus:Belliella;species:Belliella baltica; 0.755241549 0.872729376 0.878388058 0.859540005 0.813776136 0.822024012 0.78027812 0.818151386 0.801693318 0.808365207 221722934 ppk Agrobacterium radiobacter K84 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 0.974405388 0.965075881 0.918738025 0.928437179 1.013938678 0.959361052 0.939003232 0.925802278 0.917852402 0.947717953 0.938441485 0.908257911 0.88911962 0.927474582 0.877997383 0.859178494 0.938199504 1.003947381 402251337 catechol_b Burkholderia cepacia GG4 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cepacia; 0.895727256 0.848203983 0.887055032 0.940005049 0.85570799 0.832141522 0.853736279 0.905179335 0.908523323 0.867340958 0.829837955 0.924896003 0.831652913 0.805753917 0.845503907 0.892095521 0.839582557 374990486 amyA Streptomyces bingchenggensis BCW-1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces bingchenggensis; 1.150143947 1.141534675 1.122526626 1.155459635 1.119604877 1.122779029 1.117220621 1.140424912 1.145999854 1.098686045 1.078944765 1.151430263 1.084471463 1.078492569 1.064827724 1.09262623 1.137839998 1.092021742 90420342 urec Aurantimonas sp. SI85-9A1 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Aurantimonas;species:Aurantimonas manganoxydans; 1.136459345 1.140616942 1.127539154 1.14246001 1.101635347 1.136149616 1.102849045 1.140071858 1.125517196 1.139363233 1.123819723 1.124535393 1.091953992 1.111291693 1.052566719 1.082157554 1.14263616 1.143434863 389879173 ppx Tistrella mobilis KA081020-065 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Tistrella;species:Tistrella mobilis; 1.065395526 1.031146713 1.068950197 1.089610105 1.081333941 1.050070319 1.100666392 1.114599382 1.088341742 1.041126298 1.084396381 1.079018967 1.071704695 1.000403874 1.011200722 1.006008158 1.093597938 1.009809951 88792323 amyA Nitrococcus mobilis Nb-231 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Nitrococcus;species:Nitrococcus mobilis; 0.913536025 0.901264074 0.909163171 0.9252653 0.917520881 0.922564558 0.898199282 0.932239204 0.912173557 0.956166271 0.9182748 0.937606936 0.900613161 0.899617306 0.874694438 0.87938045 0.924800778 0.944182499 257439257 cda Faecalibacterium prausnitzii A2-165 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Faecalibacterium;species:Faecalibacterium prausnitzii; 1.071486688 1.080932147 1.078454697 1.071334173 1.066482792 1.061636564 1.06223478 1.059981383 1.048491131 1.050403377 1.05359901 1.044235879 1.030651871 0.996153078 0.971770348 1.016609288 1.069555483 1.030348641 33603750 phtb Bordetella bronchiseptica RB50 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella bronchiseptica; 1.241839756 1.203963088 1.220361738 1.238197558 1.186949777 1.220197121 1.199691233 1.261125349 1.230141512 1.187966617 1.193163579 1.239142843 1.20395554 1.150485359 1.174475816 1.203070682 1.241797185 1.207220982 193527477 endopolygalacturonase_fungi Alternaria macrospora Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Alternaria; 0.865413103 1.007564558 0.899913182 0.921233557 0.9227795 0.947096247 0.919276411 0.895625808 0.910031917 0.995346642 0.93668724 0.946405758 0.921842106 0.900802654 0.911199912 0.891991612 0.940685742 0.94882012 303325538 APS_AprB Desulfovibrio sp. 3_1_syn3 Sulfur adenylylsulfate reductase NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 0.972556342 1.036674309 0.988571727 1.01925449 1.004525855 0.991048887 0.99318495 0.971603858 0.950488201 0.947709667 0.938317218 1.00016032 0.948900753 0.94737994 0.94475585 0.973080572 1.008124601 0.975128687 398894471 bphc Pseudomonas sp. GM55 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 1.30021919 1.285492071 1.279935946 1.28195881 1.256154261 1.282622381 1.245047188 1.268673496 1.269320218 1.276594383 1.25913077 1.286195879 1.246064155 1.212376254 1.233119738 1.245064109 1.27107697 1.251590147 22449905 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.805402392 0.826714054 0.842764418 0.838650386 0.83228304 254432778 FBPase Cyanobium sp. PCC 7001 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanobium; 1.149877962 1.14119202 1.150616949 1.153381307 1.13074142 1.16361803 1.135708092 1.116215217 1.128680645 1.142322818 1.142252251 1.162627942 1.121948599 1.14837352 1.120488922 1.138345132 1.156338326 1.112458699 295895946 alkk Mycobacterium parascrofulaceum ATCC BAA-614 Organic Remediation Others NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium parascrofulaceum; 0.827503112 0.836398135 0.800324806 0.790855146 0.809218938 0.830782534 0.839924129 0.835171759 118424388 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.776860251 0.831087359 0.825898629 0.831266736 0.846031726 0.85222109 0.792811972 0.792710087 0.81154763 0.791203836 0.825382085 0.829924821 121530665 arsc Ralstonia pickettii 12J Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 0.849120076 0.919243825 0.854797784 0.859901787 0.918927981 0.973124135 0.87114421 0.828658077 0.889037969 0.834169129 0.795671108 0.873682414 0.918485698 0.865712307 0.942907708 0.929375201 375077643 pme Paenibacillus sp. Aloe-11 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 1.019170433 1.005652766 1.025661521 1.041938088 1.033223347 1.027617655 0.985634458 0.999181458 1.044277595 0.980403825 0.96613531 1.041842605 0.960463059 0.997037292 0.926768686 0.947308427 1.022405784 1.037060671 229589304 phn Pseudomonas fluorescens SBW25 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 1.305004798 1.292581563 1.274384728 1.266550455 1.264697433 1.304633442 1.255911659 1.261888639 1.25234586 1.250364886 1.268999961 1.27629295 1.265018731 1.225626779 1.218170386 1.245798398 1.287799971 1.247629274 374313417 amyA Granulicella mallensis MP5ACTX8 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Granulicella;species:Granulicella mallensis; 0.798101548 0.82348393 0.831863845 0.850097289 0.866490656 0.82524267 0.835337812 0.775697932 0.853283923 229589790 xyla Pseudomonas fluorescens SBW25 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 1.159144419 1.190398106 1.130268309 1.165476137 1.166049989 1.190241792 1.120804099 1.146998838 1.221408955 1.156634159 1.136168195 1.143092897 1.150378449 1.129877463 1.025316065 1.157764744 1.142553021 1.185020842 84665743 ppx Rhodobacterales bacterium HTCC2654 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Maritimibacter;species:Maritimibacter alkaliphilus; 0.826686656 0.886485607 0.82790366 0.870091024 0.830524748 0.827819916 0.856740499 0.85292094 0.848915291 0.845396615 0.807494467 0.840109962 0.877293626 0.859667812 126249774 dsrB Pyrobaculum calidifontis JCM 11548 Sulfur sulfite reduction NA superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum calidifontis; 0.990931526 0.982820618 0.969965029 1.012012027 0.950914271 0.994478366 0.955508002 1.046111946 0.963359474 0.973245185 0.962049944 0.990749969 0.961533476 0.995720254 0.961836891 1.076488247 0.98847373 0.971510465 357011151 vgb Paenibacillus elgii B69 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus elgii; 0.85115316 0.87886663 0.891252766 0.910470089 0.831016619 0.877837273 0.824878173 0.874216929 0.827369807 0.807947723 0.797561726 0.947129791 359312581 gdh Gordonia effusa NBRC 100432 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia effusa; 1.014182007 1.024403939 0.952579968 0.967667694 1.068135781 0.99456756 0.985191798 0.996919628 1.063169456 0.977289325 1.0746658 1.025428008 0.974364662 0.969825591 0.95607478 0.995875935 1.004821891 0.986490278 52694940 nifh Cupriavidus taiwanensis Nitrogen Nitrogen fixation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus; 0.778331895 0.840709205 226833058 amyA Actinomyces urogenitalis DSM 15434 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces urogenitalis; 0.883509006 0.888069002 0.88370216 0.849805373 0.883336684 0.84050959 0.875444163 0.920474262 0.886759256 0.929103233 0.901768518 0.926851097 0.849755877 0.866096594 0.825208513 0.86705891 0.813928086 192806796 ligninase Ceriporiopsis sp. MD-1 Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Meruliaceae;genus:Ceriporiopsis; 0.829345911 0.831050218 0.83022513 0.880547754 0.884656367 0.899526224 0.850338265 0.890239994 0.8979831 0.884239765 0.817069078 0.837562642 0.841584705 0.83622295 15806848 amyA Deinococcus radiodurans R1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus radiodurans; 0.886659463 0.886474757 0.908692061 0.904881785 0.84308742 0.933675922 0.834361815 0.842930387 0.899156372 0.926570879 0.84491016 0.888291883 0.88998433 0.970038469 0.890516749 0.835407295 0.922427522 0.915999407 118588076 PRI Stappia aggregata IAM 12614 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 0.906303202 0.958019712 0.867719431 0.90363621 0.898189124 0.931811209 0.862626812 0.804255296 0.882356279 0.881382921 0.836880428 0.810440699 0.889555087 0.957390095 316981092 nirk uncultured proteobacterium Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria; 0.795143828 0.827928517 0.852230678 0.856767551 0.841256739 0.805615334 0.821472701 89045485 mer Oceanicola granulosus HTCC2516 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola granulosus; 0.809355172 0.79477572 0.792227496 0.83569192 0.782643318 0.799797672 0.854746951 0.808758138 0.826294799 0.790104974 0.881450645 0.8288768 0.856291842 110633343 FBPase Chelativorans sp. BNC1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 0.952084937 0.953061365 0.949722777 0.965635648 0.945466498 0.946188535 0.963079743 0.981833049 0.945004969 0.938949585 0.934273303 0.956749598 0.905574482 0.918897655 0.879466152 0.935003846 0.957066599 0.987656784 84384684 xyla Janibacter sp. HTCC2649 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Janibacter; 0.970232168 0.928399749 0.970255795 0.975122182 0.962541579 0.975935461 0.924925358 0.947135234 0.976364036 0.946256888 0.929950389 0.950652287 0.902815616 0.908614879 0.926423645 0.877461588 0.919414198 0.950225628 356876479 amyA Azospirillum brasilense Sp245 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum brasilense; 1.002403317 0.988567801 0.996869906 1.023339926 1.000204275 1.013422739 1.004951453 0.996802238 1.00165923 0.994930289 1.001761828 1.018670267 0.971252704 0.965811579 0.962685303 0.951825281 1.002330133 1.002582951 5578710 phdci Sphingomonas xenophaga Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium; 0.996427916 1.05946021 1.019368156 0.964559608 0.965508934 1.002293155 0.967027978 0.949851962 0.951617593 0.952447314 0.962560583 0.973875861 0.958544801 0.928389557 0.947654737 0.962196567 0.968625317 1.013704154 208343513 nifh uncultured soil bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 1.272802129 1.237928517 1.250108945 1.256504282 1.241005079 1.269846809 1.25985533 1.281273478 1.249801994 1.232082715 1.224795917 1.234995115 1.212632231 1.181950539 1.195265228 1.203708572 1.251599998 1.233665513 379708641 arsc Nocardia cyriacigeorgica GUH-2 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia cyriacigeorgica; 1.117291634 1.08744554 1.050162616 1.094705116 1.08200987 1.119113297 1.050694193 1.089024594 1.076999576 1.045518362 1.076859509 1.074010713 1.078883116 1.079297193 1.054320033 1.080294884 1.110095617 1.099906362 4038456 xylanase Bacillus pumilus Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 0.915147402 0.928728496 0.915663918 0.901844922 0.865121546 0.869552086 0.84084041 0.843835265 0.879081049 0.87701443 0.86916868 0.85827549 0.838024946 0.876282057 0.814774523 0.799972862 0.861619059 0.890932105 239627415 atza Clostridiales bacterium 1_7_47_FAA Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales; 1.181232666 1.114610689 1.095367336 1.157438463 1.13558802 1.111327504 1.12974477 1.119089304 1.137156557 1.125251498 1.113020248 1.17015291 1.10998415 1.109762051 1.10583234 1.143619452 1.144334601 1.099892696 350561087 nosz Thioalkalivibrio thiocyanoxidans ARh 4 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio;species:Thioalkalivibrio thiocyanoxidans; 1.003613394 0.977257373 0.969295895 0.960483266 0.991885232 0.95308108 0.952136694 0.928250285 1.017075861 0.957725327 0.953554255 0.962945737 0.920449165 0.947060594 0.870381809 0.927997331 1.002571931 0.997110277 262086229 amyA Gordonia bronchialis DSM 43247 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia bronchialis; 0.940365963 1.020871509 1.088594187 1.052641612 1.071240928 1.027389055 1.064587299 0.934733692 0.98808999 1.134556651 1.133055756 1.085271509 1.111245084 1.085974376 1.134396505 1.066436585 0.971747043 1.053335338 241363906 urec Acidovorax delafieldii 2AN Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax delafieldii; 1.213830253 1.171023547 1.175556455 1.151498306 1.103851507 1.167489598 1.093583512 1.12262211 1.144005367 1.131540533 1.137710998 1.151710833 1.115334735 1.125753408 1.117598675 1.130201703 1.1435478 1.167203108 121495614 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.973011817 0.879625594 0.911149082 0.84712706 0.863059311 0.855871483 0.882551272 0.887760997 0.832296439 0.867879697 0.871612575 0.865722391 0.828489251 0.832833984 0.808603893 0.892929161 124901168 one_ring_12diox Burkholderia dolosa AUO158 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia dolosa; 1.267779948 1.257555632 1.235659387 1.219254566 1.218919665 1.248125935 1.2147762 1.216580124 1.234706192 1.254851767 1.247273724 1.235965483 1.202756629 1.183557239 1.171495556 1.218500245 1.252353171 1.261895644 306517189 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.094433106 1.129055467 1.098316338 1.098005417 1.126266154 1.14420915 1.082174599 1.044265027 1.05779303 1.12644972 1.103401316 1.081785931 1.122637726 1.103280801 1.061150156 1.094800383 1.102452836 1.097811788 407321042 pcpe Sinorhizobium meliloti Rm41 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium meliloti; 0.961720105 0.961866207 0.923044349 0.944546282 0.942320052 0.971363206 0.927394542 0.952953732 0.924589304 0.914827599 0.922122044 0.940429677 0.943197072 0.934005964 0.912303978 0.953674244 0.93972471 0.950231316 397087464 badh Chondromyces apiculatus DSM 436 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Chondromyces;species:Chondromyces apiculatus; 1.198438734 1.191862109 1.20518814 1.20611999 1.19061149 1.1857933 1.196877416 1.207304384 1.184779568 1.178814608 1.168790125 1.186626273 1.155215987 1.140311605 1.168860613 1.153224803 1.182138124 1.158379244 149811535 GAPDH_Calvin Roseobacter sp. AzwK-3b Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 0.949403809 0.910364851 1.016621892 1.007782924 0.966021343 1.032076397 0.957913342 0.95881179 0.972578565 0.942087318 1.005277383 0.991103097 0.950506477 0.937800385 0.983315638 0.970481156 1.052377701 0.965397434 302446497 amyA Streptomyces sp. C Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 1.184375897 1.22987364 1.16847175 1.205949236 1.177588535 1.235134147 1.176922511 1.16718249 1.15689231 1.188755015 1.201662493 1.210000044 1.167618519 1.178495957 1.137451595 1.191621806 1.197741193 1.202078765 56809495 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.865800165 0.864365104 0.858951629 0.8778334 0.875337372 0.822415549 0.862743949 0.865317595 0.850125331 0.849514761 0.854545797 0.868422575 0.800802514 0.888928935 0.872001108 297204046 acetylglucosaminidase Streptomyces sviceus ATCC 29083 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 0.860477409 0.922321872 0.813213463 0.848369253 0.872620257 0.901492741 0.815582126 0.823936932 0.896461681 0.868101518 0.844051011 0.857731253 0.824601299 0.840594657 0.891939661 390126181 poba Sinorhizobium fredii USDA 257 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium fredii; 1.085121998 1.118573534 1.084365328 1.073781133 1.075492608 1.110281053 1.059354669 1.077015113 1.090875334 1.095788411 1.074124667 1.063854249 1.068838063 1.106237938 1.034245867 1.013016218 1.110664914 1.126009441 405981706 nfsa_2 Actinomyces neuii BVS029A5 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces neuii; 0.875156207 0.893064556 0.818172733 0.904308943 0.880424788 0.870843381 0.867569689 0.876269651 0.910375601 0.85625133 0.852316956 0.871964083 0.843740899 0.859822665 0.858469031 0.815071587 0.881246249 0.892973172 46850304 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.065807842 0.990115228 1.044458218 1.038615309 1.03630778 1.036739451 1.046897212 1.025384091 1.032806654 1.035564198 0.977267299 1.009528059 1.00403121 1.005041795 0.994528827 0.984761713 1.043929756 1.005340675 319978828 mer Actinomyces sp. oral taxon 178 str. F0338 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 178; 0.842762605 0.874727834 0.777864557 0.845603628 0.776161756 0.813125535 0.846368116 0.808892618 0.839324405 0.813293154 0.834670307 0.85413647 237858243 GAPDH_Parabasalia Macrotrichomonas sp. GfMG7 Other Phylogenetic NA superkingdom:Eukaryota;order:Cristamonadida;family:Lophomonadidae;genus:Macrotrichomonas; 1.273922905 1.2334114 1.238641405 1.360916564 1.254885978 1.23598108 1.259273088 1.313392826 1.291388161 1.248887982 1.245714469 1.317642347 1.206827449 1.185897293 1.222757434 1.22946165 1.254598817 1.209337021 371479161 FBPase Acetobacter pasteurianus subsp. pasteurianus LMG 1262 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acetobacter;species:Acetobacter pasteurianus; 0.931377961 0.873139848 0.89288679 0.896809273 0.870725679 0.854941056 0.845282378 0.906138659 0.874285208 0.886176695 0.847500292 0.845810017 0.793602028 0.854447417 0.806952892 0.891881284 0.926272488 75676876 FBP_aldolase Nitrobacter winogradskyi Nb-255 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter winogradskyi; 0.786232518 0.800344293 0.819307489 0.803678924 0.820018735 0.801225381 0.817100177 0.843833925 0.945535138 0.826118787 0.812584967 0.795751756 0.792330416 384921575 phn Citreicella sp. 357 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Citreicella; 1.063899939 1.075697476 1.039176719 1.087904581 1.064711258 1.080376089 1.087339183 1.090588101 1.054343582 1.060680971 1.013779667 1.102607895 0.98349465 0.999172647 0.976093552 1.01764256 1.022142696 1.016703948 172040505 dmsa Corynebacterium urealyticum DSM 7109 Organic Remediation Others NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium urealyticum; 0.859985162 0.93256455 0.878185322 0.864269683 0.880650734 0.895332777 0.902232011 0.858399166 0.841723455 0.914035657 0.919067129 0.901417524 0.899784571 0.882067755 0.877524308 0.906876116 0.86670528 0.917645619 323365778 nifh uncultured microorganism Nitrogen Nitrogen fixation NA 0.985509993 1.017131213 0.980677595 1.026765356 1.05471444 1.048742907 1.067956852 0.989832843 1.057582705 1.021597803 1.017256125 1.063083782 1.005581186 0.943311271 0.99613954 1.055902066 1.009677641 1.013300751 120577985 ara Penicillium capsulatum Carbon Cycling Carbon degradation Hemicellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium; 1.036887527 1.01106941 1.026916978 1.032276961 0.98114921 1.068097708 0.963870275 1.027686976 1.020737392 1.006379406 0.985808255 0.995894471 0.965426626 1.01951434 0.947580007 1.000790655 1.023617331 0.996408532 150274620 amyA Bacteroides capillosus ATCC 29799 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;genus:Pseudoflavonifractor;species:Pseudoflavonifractor capillosus; 0.867018133 0.856761933 0.820022979 0.795405314 0.817812624 0.829603923 0.819773169 84693457 urec Polaromonas naphthalenivorans CJ2 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 1.418598996 1.343811239 1.375446178 1.358168017 1.320517478 1.360939261 1.317030819 1.347322496 1.354466144 1.346297861 1.362973375 1.34214138 1.302850251 1.311684787 1.285787218 1.32096026 1.356984351 1.347545016 158316598 mhpa Frankia sp. EAN1pec Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 1.122154389 1.195368548 1.153769239 1.172145376 1.141819367 1.133992388 1.116284213 1.144581568 1.118713069 1.133690764 1.140145228 1.164452558 1.103358849 1.085156123 1.082406928 1.078254555 1.116625131 1.118412833 161524486 atzb Burkholderia multivorans ATCC 17616 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 1.079785765 1.099530051 1.0302804 1.086814373 1.028079726 1.043912028 1.044020411 1.067608811 1.059108609 1.051899993 1.015152933 1.075345157 0.989445846 1.011788309 0.99930911 1.032778198 1.074196286 1.071798156 225001286 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.773561322 0.849908546 0.813334548 0.819297672 0.799306292 0.778222932 82940331 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.966690045 0.967002214 0.97983049 0.981597396 0.969485153 0.96585708 0.947882023 0.929089763 0.981360242 1.004587109 1.073740039 0.981575679 0.910847975 0.943144972 1.114358399 0.976290404 0.96537815 1.010127003 262274973 acetylglucosaminidase Grimontia hollisae CIP 101886 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;species:Grimontia hollisae; 1.130618489 1.088429605 1.11214702 1.08609998 1.016282437 1.098316893 1.028493832 1.106252536 1.058105766 1.066327239 1.040044554 1.020301042 1.016094228 1.055184274 1.028443496 1.094437336 1.084548763 1.100086069 319414004 phenol_oxidase uncultured bacterium Carbon Cycling Carbon degradation Lignin superkingdom:Bacteria; 1.082296202 1.031636574 1.071178366 1.072935987 1.052268497 1.069237156 1.03756685 0.996509749 1.067008163 1.026999165 1.048954003 1.059723147 1.026571292 1.002398887 1.018668674 1.052967783 1.083899928 0.9952408 254948606 amyA Dyadobacter fermentans DSM 18053 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Dyadobacter;species:Dyadobacter fermentans; 1.000310091 0.954113125 0.950931217 0.986586893 0.979028684 0.9696072 1.02009579 0.989370881 0.971892683 0.947440582 0.99152791 0.976941787 0.942049347 0.899043468 0.918843652 0.942951093 0.975296266 0.960589587 302690728 amyA Schizophyllum commune H4-8 Carbon Cycling Carbon degradation Starch superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 0.803608883 0.778542388 312200812 xyla Frankia sp. EuI1c Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 0.861852416 0.965320091 0.897285095 0.920264818 0.896386519 0.968047753 0.845577463 0.896024319 0.859578314 0.933522375 0.914348908 0.930644978 0.901371204 0.909384183 0.877786801 0.880252601 0.88572013 0.933238776 158138913 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.896618474 0.863338805 0.893291633 0.914284124 0.953608537 0.893493304 0.92121042 0.920182882 0.899974613 0.902811532 0.883250319 0.906544597 0.823706197 0.830502495 0.829378426 0.871191533 0.901652155 262375071 xylj Acinetobacter lwoffii SH145 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter lwoffii; 1.022823356 0.965636093 0.994569621 1.030396938 1.002314067 0.99082888 1.012502177 1.002412772 0.980855887 1.005869379 0.940885717 1.032171432 0.949041369 0.949939207 0.9092688 0.96479901 1.00471625 0.963214792 326382671 xylj Gordonia neofelifaecis NRRL B-59395 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia neofelifaecis; 0.933875206 0.894397221 0.895626151 0.867712179 0.889969581 0.882226145 0.90888578 0.908794018 0.925630978 0.846660338 0.88514686 0.907121607 0.85193938 0.852509677 0.814296381 0.967133796 0.814183246 116205994 phenol_oxidase Chaetomium globosum CBS 148.51 Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 0.860776021 0.856653898 0.822133926 0.835272382 0.821859004 0.876578387 0.886714153 0.811640914 0.795649556 0.833710465 0.863252679 0.893952887 21646698 amyA Chlorobium tepidum TLS Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobaculum;species:Chlorobaculum tepidum; 0.979309035 1.026471062 1.005414522 1.018244407 0.973033194 1.03358772 0.979661959 0.979105823 1.039590837 0.958162484 0.89178336 0.973325748 0.910677999 0.963364197 0.967809313 0.940821941 0.980677062 0.991317534 16125952 ppx Caulobacter crescentus CB15 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter vibrioides; 0.837249267 0.851303568 0.871223123 0.830031524 0.829990964 0.858452911 0.853586157 0.876865525 0.858035083 0.859810643 0.786191216 0.852684461 0.794730178 0.884362991 0.851529241 45386155 narg unidentified bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.900374617 0.876295082 0.81996203 0.885154439 0.813668658 0.869180415 0.827037548 0.823720539 0.859293273 0.875310588 0.802804498 0.847771527 0.814138844 0.817776553 0.857790801 0.884215285 0.877145977 37956598 endochitinase Nomuraea rileyi Carbon Cycling Carbon degradation Chitin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Clavicipitaceae;genus:Nomuraea; 1.31796944 1.310999094 1.309980942 1.337982895 1.312356884 1.363561607 1.30478193 1.31083056 1.300840697 1.273027725 1.319714833 1.297094533 1.289744586 1.256054769 1.23224049 1.282122729 1.342293281 1.29466575 340781799 merb Acidithiobacillus caldus SM-1 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus caldus; 0.983507714 1.004951979 1.007396396 1.006677786 0.970015333 0.991317715 0.978437418 0.985033036 1.008942911 1.001210751 0.982567816 0.986008987 0.966853406 0.959878886 0.954965757 0.939543016 1.008415339 1.001694672 83838572 phn Roseovarius nubinhibens ISM Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius;species:Roseovarius nubinhibens; 0.926246989 1.040411726 0.988515526 0.983855857 0.950400926 1.033318092 0.89376563 0.927737642 0.982335071 1.050537086 0.905218091 0.974598449 0.928570586 0.998398854 0.907534691 0.989605507 0.954758603 1.028882547 94985846 amyA Deinococcus geothermalis DSM 11300 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus geothermalis; 0.877664242 0.889052676 0.835935313 0.841511983 0.865595355 0.839811355 0.85234542 0.852221579 0.835193889 0.879723664 0.827045372 0.801154256 0.866226826 256360258 vana Catenulispora acidiphila DSM 44928 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 1.004940059 1.01009159 0.943945668 0.964885745 0.920604048 1.012249801 0.942561047 0.990517706 0.940790638 0.944587735 0.905385638 0.939591537 0.90671919 0.940479912 0.926288369 0.898616753 0.994961561 0.95970386 291340659 badh Streptomyces ghanaensis ATCC 14672 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces ghanaensis; 0.88083198 0.921553606 0.89992607 0.8519581 0.906357103 0.864890646 0.872105448 0.8562335 0.858748974 0.895747644 0.886776606 0.800873104 0.830557989 0.854633957 0.866221531 343095161 amyA Paenibacillus polymyxa M1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus polymyxa; 1.159588575 1.12686157 1.14029069 1.117081171 1.098269463 1.116044591 1.086254434 1.088118792 1.112721951 1.098977357 1.088012566 1.127116232 1.087865257 1.077590278 1.093188349 1.076728565 1.099049371 1.110767958 38427020 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.127581694 1.074534343 1.109828303 1.08562603 1.126889412 1.126832455 1.10723535 1.069469943 1.058714758 1.101310421 1.132917468 1.090926409 1.092419468 1.085762357 1.038192118 1.066980786 1.13852217 1.121449894 153006886 urec Anaeromyxobacter sp. Fw109-5 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter; 1.087028904 1.077185967 1.071623149 1.115718433 1.043541075 1.085128651 1.072031217 1.106300852 1.084156139 1.084422489 1.052618853 1.097903284 1.057083706 1.040111954 1.032714028 1.053470135 1.106125648 1.073524665 69952611 amyA Shewanella frigidimarina NCIMB 400 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella frigidimarina; 0.867908108 0.901978626 0.841243489 0.826466587 0.854236419 0.866335538 0.832193306 0.814901445 0.82208408 0.866249958 0.891914457 93357836 catechol Ralstonia metallidurans CH34 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 1.198318959 1.158444534 1.136075579 1.134822179 1.150196364 1.179327433 1.131268065 1.115699333 1.115396867 1.153311522 1.129200301 1.149430452 1.111046895 1.087550983 1.054354373 1.110698859 1.13803901 1.147230113 365888612 bphc Bradyrhizobium sp. STM 3809 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 1.198244316 1.099898182 1.085206945 1.0709442 1.040623284 1.077697237 1.014578534 1.159470191 1.166335913 1.041977387 1.025527917 1.121858156 1.00586495 1.0223433 0.99648289 1.035851292 1.121105044 1.128144306 14026767 cmci Mesorhizobium loti MAFF303099 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 0.890644354 0.838710989 0.885760279 0.864216976 0.945515273 0.863355223 0.972680068 0.880710745 0.854016015 0.945869472 0.888017936 0.856962273 0.936464193 0.925973259 0.843330092 0.887437653 0.868924233 0.883461478 116741415 ccmL Listeria welshimeri serovar 6b str. SLCC5334 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Listeriaceae;genus:Listeria;species:Listeria welshimeri; 1.117620731 1.127270379 1.136741539 1.150840852 1.113757283 1.085082346 1.123298273 1.113199111 1.155208653 1.130083842 1.115659572 1.14644116 1.059521962 1.04703014 1.058511016 1.068973174 1.132234404 1.095825456 294884077 aoxb bacterium enrichment culture clone aoxauto195_4W Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 0.821241537 0.86216175 0.814086483 0.809711589 0.83443246 0.820652881 0.857733422 0.858389572 0.809064525 0.799856149 0.862864891 237905925 bph Uncinocarpus reesii 1704 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Onygenaceae;genus:Uncinocarpus;species:Uncinocarpus reesii; 0.79391181 0.836813163 0.807808187 0.797121755 115525715 amyA Rhodopseudomonas palustris BisA53 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 0.80492528 0.837925012 0.828284452 0.850295058 0.798615635 0.889093753 0.805118219 0.802698119 0.827812086 0.819532075 0.801303023 0.784618557 0.867145966 371764379 terc Lactobacillus kisonensis F0435 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus kisonensis; 0.9575562 0.870580383 0.845664111 0.940874249 0.858952447 0.864754041 0.839400071 0.866973584 0.945427075 0.843942568 90569650 norb Pseudomonas aeruginosa Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.82477137 0.822163168 0.857614015 0.852407098 0.848613697 0.869099782 0.804358198 0.834694842 0.876175155 0.85523968 0.8406241 0.810988317 0.826079165 86750253 nosz Rhodopseudomonas palustris HaA2 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 0.857071405 0.849847723 0.8590395 0.855233277 0.881647108 0.816948546 0.855201013 0.824843469 0.874612307 0.873859233 0.863412422 0.857298576 0.819306082 0.854558717 0.834622876 0.794981062 0.894165246 0.888386149 1806634 catechol_b Sphingobium chungbukense Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium; 0.828884183 0.844148532 0.878183547 0.896017487 0.923170771 0.791552312 0.865612074 0.849659593 0.805878118 0.858428157 0.844955662 0.995957708 0.849550457 0.816970815 0.807882755 0.862647458 0.824678932 118570811 limeh Mycobacterium ulcerans Agy99 Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium ulcerans; 1.319721807 1.2933515 1.273613785 1.274322891 1.278882587 1.296618636 1.251051343 1.256665285 1.261969939 1.26780687 1.270956819 1.273821257 1.248866512 1.208939056 1.201206072 1.244965834 1.297657997 1.269167549 78093590 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.823542104 0.887560297 0.840639557 0.864709709 1.052914253 0.85842173 0.863627452 0.829786134 0.898672264 0.876443158 1.020570782 0.862917759 0.861945388 0.802980849 0.842373724 0.874860657 0.83537715 0.865417605 188578912 pcag Xanthomonas oryzae pv. oryzae PXO99A Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas oryzae; 1.193574797 1.23805756 1.18440149 1.220907051 1.188570743 1.24143035 1.204300247 1.198593185 1.1784195 1.215424442 1.234221472 1.232505449 1.189623913 1.183245813 1.184668301 1.208334792 1.191462512 1.219809119 378747744 aps_apra uncultured Firmicutes bacterium Sulfur adenylylsulfate reductase NA superkingdom:Bacteria;phylum:Firmicutes; 1.279541458 1.270300286 1.249279677 1.302968453 1.252509383 1.229491223 1.271048207 1.261006395 1.266936631 1.21049655 1.224334538 1.267920016 1.226627543 1.208993834 1.21647986 1.235575255 1.250608877 1.233672628 224942037 fthfs Eikenella corrodens ATCC 23834 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Eikenella;species:Eikenella corrodens; 1.15261259 1.142265732 1.140833779 1.173376571 1.124356986 1.155087332 1.12106077 1.147002766 1.148573562 1.152180826 1.105102623 1.155162795 1.119009124 1.106775917 1.080943187 1.164738874 1.151141983 1.129293593 326411479 urec Polymorphum gilvum SL003B-26A1 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;species:Polymorphum gilvum; 0.877676379 0.856387608 0.862181291 0.917207984 0.848492424 0.80131239 0.840589418 0.922729319 0.860784822 0.854728 0.90770677 0.866859849 0.852962617 0.831859309 0.844126812 0.863397834 0.879552403 0.836827387 171694720 tannase_Cdeg Podospora anserina Carbon Cycling Carbon degradation Tannins superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Lasiosphaeriaceae;genus:Podospora;species:Podospora anserina; 0.85942623 0.857567426 0.80278703 0.804877189 0.813387301 0.802436832 0.833201622 0.888721993 0.863392156 422314469 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.927680428 0.941216058 0.864296376 0.883007292 0.900402956 0.871705034 0.849841193 0.857877204 0.90646121 0.86882788 0.859341686 0.881056024 0.833080361 0.903119526 0.829702818 0.912970875 0.930262183 119898274 one_ring_23diox Azoarcus sp. BH72 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 1.136450336 1.140927093 1.104795762 1.112697257 1.10470254 1.148372516 1.118394785 1.121190083 1.126499879 1.145781117 1.096697043 1.102783141 1.050690947 1.086224797 0.97379639 1.055592402 1.106987797 1.09022574 283439056 amyA Pirellula staleyi DSM 6068 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Pirellula;species:Pirellula staleyi; 1.011855573 1.020927927 1.000287397 1.024300499 0.995221566 1.013361577 0.97984299 0.996958587 0.995698504 0.991862253 0.997790396 1.011195132 1.044427895 0.978891111 0.958994027 1.016589343 1.024889921 1.003062546 164456066 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 0.788772506 0.826389074 85773453 terc Anaeromyxobacter dehalogenans 2CP-C Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter;species:Anaeromyxobacter dehalogenans; 1.032619424 1.034150991 0.971925181 1.02047906 0.980319015 1.030520553 1.00271255 0.997577515 1.001289072 0.98600444 0.986625681 0.999422798 0.951441228 0.944364397 0.918952921 0.96277173 1.043823362 1.009819562 87136607 xylanase Novosphingobium aromaticivorans DSM 12444 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium aromaticivorans; 0.863181898 0.942277012 0.863719649 0.884945625 0.941239545 0.840709159 0.868163868 0.891604084 0.893659322 0.891534384 0.842676007 0.856750858 0.909054791 0.845338097 0.887927035 0.873996635 92910784 ophc Mycobacterium sp. JLS Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 0.796800651 0.843091752 0.788476052 0.807063899 0.832948156 0.830365142 332039772 PRI Hylemonella gracilis ATCC 19624 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Hylemonella;species:Hylemonella gracilis; 0.925607026 0.936159635 0.973974182 0.986406249 0.975388444 0.956051746 0.945337013 0.993970859 0.940946611 0.90422448 0.9645796 0.965292241 0.926344342 0.903144528 0.911827483 0.902595697 0.987330345 0.959693503 91696628 mer Polaromonas sp. JS666 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 1.063128544 1.110145088 1.043628843 1.083979711 1.095458 1.14166778 1.055944506 1.042271318 1.053129838 1.089006396 1.073380729 1.091915581 1.078314734 1.021104384 1.046569443 1.060751143 1.068282645 1.033660768 345862488 CsoS1_CcmK Desulfosporosinus sp. OT Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfosporosinus; 0.793846025 0.921537836 0.855469225 0.862834833 0.914733942 0.870408979 0.82300104 0.885479399 0.775382258 0.928108507 116223000 CsoS1_CcmK Candidatus Solibacter usitatus Ellin6076 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 1.230831608 1.201920217 1.202784498 1.252492748 1.190286081 1.243123678 1.262248246 1.207998647 1.238090727 1.204347809 1.196176357 1.20761217 1.176585925 1.199516747 1.161031969 1.194373841 1.239274405 1.209053621 302336260 amyA Olsenella uli DSM 7084 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Olsenella;species:Olsenella uli; 0.852044702 0.814915622 0.81637754 0.843168313 0.874348143 0.847078167 0.868969537 0.890057504 0.839947584 0.848208731 0.855741045 0.843224182 151580348 linb Opitutaceae bacterium TAV2 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 0.815707703 0.810018375 0.831761666 0.864907284 0.848577823 0.805394504 0.844510403 0.823772105 0.813643067 0.839583369 114540427 pcag Roseovarius sp. HTCC2601 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pelagibaca;species:Pelagibaca bermudensis; 1.251927683 1.210191978 1.223938913 1.208999762 1.173721759 1.199805912 1.140984259 1.174540531 1.216314675 1.216659983 1.204461184 1.195797153 1.177907172 1.189488762 1.177254293 1.19012926 1.23935481 1.195457592 121296537 acetylglucosaminidase Stenotrophomonas maltophilia Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas; 0.851048915 0.879207698 0.837988414 0.820811279 1.047944969 0.84421769 0.856241646 0.794720339 0.871730892 0.887184207 221200744 linc Burkholderia multivorans CGD2M Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 0.818652523 0.909380979 0.885399468 0.867877141 0.853967612 0.893299472 0.851114995 0.807859918 0.835718816 0.831321451 0.853947318 0.827594743 0.927836475 330467874 xylanase Verrucosispora maris AB-18-032 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Verrucosispora;species:Verrucosispora maris; 1.233328454 1.187024763 1.239943143 1.243319497 1.218462144 1.233960937 1.207896767 1.22773446 1.224898946 1.269029148 1.23659802 1.243168803 1.199967111 1.187416743 1.227094711 1.194486556 1.217371871 1.198248027 383782423 chitinase Actinoplanes missouriensis 431 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes;species:Actinoplanes missouriensis; 0.990186845 1.019631957 1.046401151 1.031319674 1.058371353 1.03980253 1.026133737 1.002239585 1.014556849 1.048864596 1.052536656 1.02551905 0.983920653 0.996700585 0.970887268 0.969268572 1.028532346 1.034047207 146409803 tktA Bradyrhizobium sp. BTAi1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 1.024620277 1.030464062 0.983220878 1.067091847 1.021620636 1.00160459 1.016372273 1.041751847 1.045581002 1.041432064 1.015659238 1.045688247 1.016539091 1.013261137 0.9650963 0.995508511 1.001241031 1.014312987 334145629 proO Novosphingobium sp. PP1Y Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 1.005057195 1.015740097 0.957876556 1.020390015 0.969597704 0.978520223 0.946678518 1.016424748 0.995611895 0.953102205 0.960670055 0.985193581 0.940722613 0.960159346 0.95638066 0.995104723 1.007230716 0.989051542 378716957 ppx Gordonia polyisoprenivorans VH2 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia polyisoprenivorans; 1.11933517 1.108931505 1.107889129 1.138498718 1.153668049 1.15276231 1.142085832 1.162637401 1.120300813 1.12317064 1.126322284 1.164536591 1.08106052 1.124837965 1.065856328 1.110393029 1.083824383 1.087466876 340781387 PRI Acidithiobacillus caldus SM-1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus caldus; 1.07006015 1.000913345 1.003906701 1.022243671 1.012268093 1.015698986 0.996304776 1.003106993 1.019625842 1.026135433 1.030845433 1.026875845 1.032854311 1.002966779 1.011539896 0.995408229 1.028189613 1.009515403 379708143 amyA Nocardia cyriacigeorgica GUH-2 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia cyriacigeorgica; 1.129314091 1.098060172 1.107236561 1.131358116 1.095296974 1.116572954 1.058188358 1.070330705 1.117093508 1.05676738 1.045741737 1.082167736 1.049106825 1.04313192 1.061447907 1.032474735 1.130771823 1.102206389 149908977 atzb Moritella sp. PE36 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Moritellaceae;genus:Moritella; 1.011458011 0.957272094 0.981927557 1.039331312 1.026787475 1.031870667 0.99028585 1.033648392 1.046355608 0.974629844 0.990656379 0.985690314 1.011041106 1.002836381 1.009618596 0.989642251 1.012586016 1.007976772 239986218 cysJ Streptomyces roseosporus NRRL 11379 Sulfur Reduction NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces filamentosus; 1.103627073 1.105517139 1.120678532 1.111606777 1.017277292 1.109789157 1.032671937 1.062798468 1.084352916 1.070902368 1.076414832 1.064676038 1.057995845 1.035236523 1.015110781 1.044172793 1.102582624 1.075508337 50982452 pmoa uncultured bacterium Carbon Cycling Methane Methane oxidation superkingdom:Bacteria; 1.247526854 1.194442749 1.224412149 1.258080812 1.190340211 1.212484503 1.186011142 1.237163569 1.222944291 1.195076287 1.222371205 1.231531196 1.200765333 1.197697155 1.215790751 1.229071732 1.254312239 1.191117591 119674858 amyA Pyrobaculum islandicum DSM 4184 Carbon Cycling Carbon degradation Starch superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum islandicum; 0.799344472 0.893103524 0.85274078 0.915901827 0.945021849 0.936434973 0.907218931 0.870789285 0.872970688 0.909051097 0.856971136 0.880044547 0.902354286 0.872006094 0.890454738 0.949118109 0.88875294 0.908854597 283992824 chitinase uncultured organism Carbon Cycling Carbon degradation Chitin 0.883200136 0.791762726 0.817199461 0.8220336 0.881705306 0.81036481 0.825720577 71847839 arra Dechloromonas aromatica RCB Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Dechloromonas;species:Dechloromonas aromatica; 0.865703948 0.852494915 0.82294303 0.83753266 0.867578903 0.831178459 0.807159395 0.820413656 0.838008533 0.828440397 0.824626675 0.837865736 0.806654318 0.836176963 0.803535628 0.870699577 4633573 nosz uncultured bacterium ProV Nitrogen Denitrification NA superkingdom:Bacteria; 1.199300429 1.1870585 1.199665213 1.20966754 1.181495676 1.197766953 1.180592988 1.175883384 1.20427208 1.182515944 1.191302931 1.219640171 1.129270767 1.147440957 1.124324972 1.124390323 1.184803347 1.20083438 28853001 phn Pseudomonas syringae pv. tomato str. DC3000 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 0.966859472 0.938091297 0.934561636 0.961864639 0.950787479 0.968855829 0.969385118 0.930670088 0.937576695 0.941821664 0.962059443 0.93749799 0.913633381 0.923928029 0.918723787 0.903536983 0.957180647 0.921754906 160896992 mdlc Delftia acidovorans SPH-1 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 1.13086718 1.142984744 1.101026143 1.103428673 1.095653516 1.153281127 1.121822424 1.109505727 1.075920286 1.117338557 1.091303421 1.119267718 1.048682478 1.091746835 1.036529996 1.066474241 1.099268428 1.134445852 302545897 amyA Streptomyces hygroscopicus ATCC 53653 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces himastatinicus; 0.998454797 1.021401946 0.981752295 1.021773158 1.001395724 1.013392089 0.969443321 0.967048848 0.978629337 0.975503347 0.943195784 0.993083247 0.992678069 0.931912815 0.952514052 0.967053246 1.006930269 0.991316588 164455578 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 0.891321311 0.858951929 0.907357101 0.918298595 0.912371545 0.847524193 0.838732939 0.866716894 0.845790342 0.87674337 0.881132977 113936557 alkb Caulobacter sp. K31 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 1.059434524 1.044516834 1.052877318 1.088419833 1.043251775 1.02515148 1.065477516 1.059746736 1.056605699 1.025838241 1.057185255 1.057902014 1.028034879 1.009977262 1.002560328 1.002982988 1.048727451 1.016657277 34017052 mcra uncultured methanogenic archaeon Carbon Cycling Methane Methanogenesis superkingdom:Archaea;phylum:Euryarchaeota; 1.005585233 1.026300228 0.980887764 0.994534842 0.940488269 1.022300318 0.973119357 1.078838757 0.985934572 0.991980017 0.961604694 0.966865457 0.90494481 0.960409894 0.876890251 0.948586189 0.965902887 1.036292741 339883171 amyA Actinomyces sp. oral taxon 448 str. F0400 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 448; 0.931081617 0.88738578 1.006564625 1.034259944 0.98763116 1.077061938 1.064872737 0.965293281 0.978570988 1.019688189 0.974240495 0.963128152 1.028862787 1.001137754 0.977538492 0.984017291 1.008200685 0.94629069 296169344 alkk Mycobacterium parascrofulaceum ATCC BAA-614 Organic Remediation Others NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium parascrofulaceum; 0.954230303 0.864423612 0.901969236 0.835639343 0.880752144 0.901752698 0.891363708 0.864199949 0.860077189 0.898808049 0.865231676 0.910079661 0.857258078 0.846556195 0.809046059 0.844094658 0.815344539 0.899423299 223470351 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.825389966 0.826507024 0.863445976 0.854090014 0.909195045 0.866802557 0.896639812 0.893315184 0.867888332 0.888654793 0.895853855 0.861783295 0.863205168 0.873985887 0.804310792 0.844896104 0.888914844 385742434 cmci Bradyrhizobium sp. WSM1253 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.852595831 0.919635673 0.826189251 0.868107993 0.823541564 0.816699476 0.806253603 0.877637176 0.88555318 170768174 dmsa Escherichia albertii TW07627 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia albertii; 1.323553629 1.308797057 1.292023592 1.314025876 1.295320245 1.300425034 1.270893189 1.294048724 1.317153312 1.290978171 1.270316219 1.313363633 1.277016857 1.253454545 1.263685606 1.268302397 1.31547635 1.270001592 222477146 dsra uncultured bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.017697586 1.015509027 1.035217749 1.034486206 1.041564208 1.042398906 1.062556441 1.049680299 1.023411699 1.020959281 1.017724407 1.039367044 1.038670198 0.963767306 0.975856248 0.935822859 0.989838493 1.035724711 118656366 alkb Burkholderia multivorans ATCC 17616 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 0.986790927 0.918967624 1.008050915 0.982210817 0.994700276 0.96092789 0.936670235 0.942031772 0.985261442 0.983473123 0.979412664 1.024767649 0.907977636 0.971954229 0.88946307 0.938642455 1.056789999 0.979995785 352117915 mdlc Natrinema pellirubrum DSM 15624 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Natrinema;species:Natrinema pellirubrum; 1.238851975 1.227065327 1.218286578 1.230889842 1.236213211 1.240126273 1.198665205 1.215024769 1.225389687 1.22499058 1.219906579 1.237923104 1.186598826 1.198007525 1.16711846 1.211125419 1.201582233 1.211932198 3115395 pcpb Sphingomonas sp. UG30 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 0.920032899 0.864471947 0.89849024 0.930476495 0.924094257 0.922299929 0.923778329 0.881224612 0.930581011 0.862487049 0.84826014 0.888735567 0.871985655 0.841575612 0.867786686 0.805988972 0.904961745 0.905052548 226934606 nagg Pseudomonas putida Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 1.048713736 1.055881759 1.017719403 1.063805953 1.054167397 1.072534897 1.00386329 1.023668654 1.038444167 1.01966724 0.992216526 1.030617446 1.000034787 0.99859365 0.993590607 0.989281547 1.11054077 1.058562395 292675836 catb Sphingobium japonicum UT26S Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium;species:Sphingobium japonicum; 0.794008189 0.834904746 0.77884648 0.834627225 315470386 cellobiase Ethanoligenens harbinense YUAN-3 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ethanoligenens;species:Ethanoligenens harbinense; 0.794136841 0.779982188 0.752192832 296115777 FBPase Gluconacetobacter hansenii ATCC 23769 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter hansenii; 1.057384165 1.052944143 1.052488594 1.064695046 1.047424178 1.066970897 1.021011628 1.054319668 1.032884311 1.086416547 1.026270399 1.072975492 1.019440716 1.060951193 1.061906551 1.115456223 1.083618025 1.047659177 337740042 tktA Oligotropha carboxidovorans OM5 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Oligotropha;species:Oligotropha carboxidovorans; 1.181897935 1.35189815 1.060678124 1.011194245 1.029584731 1.026022383 1.046314295 1.042293014 1.019826708 1.005424508 1.054533112 1.01885755 0.956453267 0.936503635 0.89080567 0.954610123 1.023010517 1.022246305 329576143 arra Parasutterella excrementihominis YIT 11859 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Sutterellaceae;genus:Parasutterella;species:Parasutterella excrementihominis; 0.858299931 0.900072553 0.937618708 0.888310121 0.900512026 0.893701358 0.904190204 0.919888116 0.860985471 0.887700182 0.894218244 0.889165664 0.909373842 0.835639061 0.882047834 0.886546836 0.900267114 0.853669505 83574500 ppx Rhodospirillum rubrum ATCC 11170 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum rubrum; 1.237665358 1.235283444 1.20474968 1.237447622 1.202314276 1.241718566 1.201527208 1.220281555 1.203655688 1.20549937 1.20406637 1.211674346 1.211223392 1.181248385 1.179863135 1.2191275 1.243790034 1.194820228 314971572 acetylglucosaminidase Propionibacterium acnes HL037PA3 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium;species:Propionibacterium acnes; 0.920438294 0.838289356 0.89567036 0.969541583 0.871168387 0.845326218 0.867969232 0.902135458 0.966061546 0.883975629 0.88078058 0.92827053 0.824339424 0.81216083 0.832593704 0.985771695 0.814372374 90954625 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.833721852 0.801967907 0.814188636 0.815734436 0.842280301 0.817950242 0.807088955 0.793205664 0.85911468 94967932 xyla Acidobacteria bacterium Ellin345 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Acidobacteria;genus:Candidatus Koribacter;species:Candidatus Koribacter versatilis; 0.782620852 0.908964812 0.815594412 0.867070288 0.810622297 0.810958485 0.833459605 0.834011596 0.839344776 0.816551748 0.882022357 239832026 TIM Ochrobactrum intermedium LMG 3301 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum intermedium; 0.786743575 0.804303988 0.814127224 0.781226889 0.794808365 0.806951238 146308011 arsc Pseudomonas mendocina ymp Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas mendocina; 0.920014113 0.929990019 0.889609469 0.901071515 0.863554468 0.882658809 0.859467382 0.881852954 0.860396824 0.891748435 0.877015504 0.857780642 0.836731427 0.846585268 0.896776403 0.872298563 336300288 linb Paenibacillus mucilaginosus KNP414 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 0.931296937 0.92983582 0.852427258 0.874130045 0.833403696 0.905799496 0.836998668 0.8685961 0.868276206 0.868826592 0.898498698 0.857187941 0.832207986 0.866407788 0.826931342 0.869101638 0.926165512 144898944 dsra Magnetospirillum gryphiswaldense MSR-1 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum gryphiswaldense; 1.020239899 1.034862836 1.022235189 1.016456576 1.00440581 1.039998854 1.023766775 1.011074565 1.017649164 1.055846926 1.041546686 1.036677713 1.011754791 1.026763079 0.987827867 0.965138094 1.02139948 1.034297828 120431228 phenol_oxidase Sclerotinia minor Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Sclerotinia; 1.025578675 1.060218324 1.045149817 1.069036764 1.016776493 1.039042596 1.003660078 0.999805301 1.012307932 1.019251066 1.005919517 1.021107293 1.020745343 0.983392631 0.973627049 0.998977752 1.065815082 1.005808178 286035 ppk Klebsiella aerogenes Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 0.995418486 0.961696208 0.953096268 0.969405886 0.870653123 0.924992677 0.903445639 0.972819774 1.000113306 0.935270179 0.908462497 0.941065053 0.911399595 0.923944699 0.931101512 0.92108736 0.962963211 0.930821035 374375070 chitinase Niabella soli DSM 19437 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;genus:Niabella;species:Niabella soli; 0.911284322 0.868138905 0.867359356 0.84447267 0.892666239 0.896587018 0.822553928 0.869782409 0.896714916 0.869513822 0.825473037 0.886718091 0.839139319 0.855180697 0.852166806 0.856254423 46196680 terc Thermus thermophilus HB27 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus;species:Thermus thermophilus; 0.899859754 0.930161431 0.823789477 0.886953016 0.82071344 0.828056749 0.921422804 0.913502399 0.86271884 0.865920368 0.875748743 0.933667888 0.942637487 407767377 amie Alcanivorax hongdengensis A-11-3 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax;species:Alcanivorax hongdengensis; 1.136710668 1.094483759 1.139228245 1.151075451 1.120193296 1.131145307 1.09728646 1.211414922 1.159052225 1.120171529 1.137411549 1.130802766 1.119726869 1.084842631 1.100104622 1.155639315 1.134529555 1.128249714 113473905 phtb Sphingomonas sp. KA1 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 0.880014418 0.841137841 0.890030756 0.984676577 0.875917083 0.919314858 0.908247877 0.911750028 0.950094499 0.904617927 0.815477504 0.87509895 0.884100417 0.905011661 0.890865719 0.857667808 0.95975344 0.892904298 326415452 bphb Polymorphum gilvum SL003B-26A1 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;species:Polymorphum gilvum; 0.937193901 0.933197992 0.909789411 0.932496222 0.906391872 0.938090808 0.862174671 0.858679917 0.895300656 0.896182388 0.893233313 0.911242309 0.89583133 0.87524473 0.905442195 0.885390103 0.949156811 0.967868837 290583068 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.889083639 0.85745096 0.799132529 0.839875852 255957271 alkb uncultured bacterium Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria; 1.069690217 1.060741317 1.04180378 1.061757175 1.009630155 1.08708865 1.046119135 1.032959174 1.045351231 1.004981176 1.059728167 1.059273639 1.019202713 1.04399322 1.004662652 1.024277855 1.092813897 1.058461903 86749912 TIM Rhodopseudomonas palustris HaA2 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 1.249432731 1.237105793 1.27711937 1.247559297 1.209318183 1.23862027 1.212590888 1.2332644 1.231277672 1.225957419 1.217656364 1.261244431 1.199484709 1.177268336 1.17417774 1.195408108 1.231239574 1.211816459 372474454 beta_agarase Opitutaceae bacterium TAV5 Carbon Cycling Carbon degradation Agar superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 1.024217706 0.992258373 0.957914674 1.042591964 0.92847044 0.977014189 0.94186238 0.940216428 1.060882893 0.964020657 0.936133709 0.958425653 0.972095683 0.96147885 0.947136882 0.943551443 1.010560365 0.977453972 192360271 amyA Cellvibrio japonicus Ueda107 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio;species:Cellvibrio japonicus; 1.18039255 1.152769478 1.189230766 1.215159253 1.190016762 1.214776911 1.20874769 1.214842015 1.150870543 1.183591304 1.173318141 1.201104643 1.216900575 1.137571883 1.181147628 1.199463635 1.169864138 1.149144003 83747593 proO Ralstonia solanacearum UW551 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 0.845826942 0.892456128 0.839109009 0.843657635 0.835516171 0.823088469 0.838874791 0.853469879 0.859377371 0.954186364 0.854784364 0.848675174 0.868143786 0.842062856 118168209 mult_ring_12DiOx Mycobacterium avium 104 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 0.926974548 0.92851621 0.958034516 0.993006741 1.032014145 1.00617329 1.048329749 1.00725219 0.988474965 1.023163836 1.03063806 0.988157726 0.951307592 0.947000993 0.928187299 0.929499799 0.97716292 0.954660855 353211660 exaa(moxf) Hyphomicrobium denitrificans 1NES1 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium;species:Hyphomicrobium denitrificans; 0.951600017 0.978241789 0.867646158 0.941393137 0.896050755 0.928751634 0.916549249 0.904382112 0.941143454 0.932446019 0.902476919 0.92465949 0.867715809 0.873824444 0.857710763 0.923395814 0.924603963 0.97389219 226346752 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.959211493 0.88249137 0.935300825 0.974565683 0.894847411 0.89173125 0.887620853 0.931551501 0.947478551 0.908839052 0.909793218 0.940759277 0.858490652 0.907558669 0.840694717 0.863752052 0.924262449 0.908661844 14389267 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.802169457 0.896917763 0.823321499 0.806452276 0.771400333 0.939128219 197626310 pcpb Cyanobium sp. PCC 7001 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanobium; 1.16784479 1.150728665 1.138824926 1.150236771 1.157828028 1.168561258 1.159044464 1.162167101 1.133450968 1.139152656 1.134462721 1.145246866 1.15634928 1.126306646 1.085841772 1.125408616 1.161396237 1.138914229 91807148 nosz uncultured alpha proteobacterium Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 0.768616747 0.822689102 0.821888978 0.842785136 0.853045271 0.755433534 0.827522977 261345271 ppx Providencia rustigianii DSM 4541 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia rustigianii; 0.929378693 0.86205597 0.801122919 0.805941704 0.842609522 0.821158081 323365350 nifh uncultured microorganism Nitrogen Nitrogen fixation NA 0.81317238 0.808795061 325261634 xylanase Clostridium sp. D5 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium; 0.832082295 0.815150029 0.814673158 0.806785387 0.830469774 0.839065229 0.871903183 0.833631416 0.868698738 0.831179206 0.885254613 0.78796689 389877872 mdlc Tistrella mobilis KA081020-065 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Tistrella;species:Tistrella mobilis; 1.189083142 1.200829951 1.194245125 1.182010386 1.141493304 1.186492401 1.200182218 1.136816213 1.165348911 1.21234696 1.141229758 1.176680944 1.115129377 1.154423107 1.080855791 1.128435894 1.181946266 1.217076325 375100932 terc Saccharomonospora cyanea NA-134 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora cyanea; 0.823249303 0.81432447 0.804639749 0.839035527 0.821721453 0.836109611 0.800860203 334117156 amyA Microcoleus vaginatus FGP-2 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Microcoleus;species:Microcoleus vaginatus; 0.815690146 0.857660313 0.841053622 0.825284733 0.867428468 0.842534282 0.879063542 0.840276564 0.931451111 83590440 dsrB Moorella thermoacetica ATCC 39073 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Moorella;species:Moorella thermoacetica; 1.026024569 1.005529072 1.038402971 1.121458157 1.042176792 1.024111042 1.085902692 1.125669691 1.087964349 1.061374661 1.02767421 1.073976304 1.042802404 1.032996048 1.033446569 1.062521283 1.015118953 1.006188483 323470849 ara Arthrobacter phenanthrenivorans Sphe3 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter phenanthrenivorans; 1.035670622 1.014307394 0.974611876 1.028686256 0.987614675 1.010798885 0.98228681 1.006273056 1.016663936 0.997285257 0.979878004 1.011994141 0.996583337 0.948178363 0.983916446 1.008109646 1.018875841 1.018054008 410089116 nitro Pseudomonas viridiflava UASWS0038 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas viridiflava; 0.920248201 0.829743005 0.801328159 0.85019992 0.868830569 0.826778319 0.832069833 0.836343451 0.836538202 0.864392803 371589167 badh Rahnella aquatilis CIP 78.65 = ATCC 33071 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Rahnella;species:Rahnella aquatilis; 0.774711477 0.795556557 0.851881839 0.794675719 0.813562069 0.812499091 0.868154999 0.851187849 0.833725146 256675909 acetylglucosaminidase Streptomyces sp. SPB78 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 0.853173749 0.797550356 0.824737344 0.827261271 0.807105823 0.838800539 0.804023332 0.815976937 0.826469677 0.866964356 76875211 amyA Pseudoalteromonas haloplanktis TAC125 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas haloplanktis; 0.808900626 0.790536078 0.825774781 0.825985578 0.804983588 0.825264589 0.817096643 0.797498381 0.840031778 0.831861679 0.804624011 76803672 alkb uncultured bacterium Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria; 0.934141936 0.914700645 0.949438067 0.964866045 0.962440165 0.952239395 0.967245649 0.964147265 0.921363991 0.925250174 0.93372407 0.956669615 0.909983554 0.893955027 0.909696911 0.904024287 0.975658101 0.940332522 387889453 napa Escherichia blattae DSM 4481 Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Shimwellia;species:Shimwellia blattae; 0.96733605 0.972402305 0.954236121 0.990391383 0.988608092 0.962586863 0.946469478 0.959697553 0.971258903 0.988792711 0.934971887 0.992980306 0.967075547 0.923606534 0.908346096 0.927771434 0.968442038 0.988088302 256355843 chitinase Catenulispora acidiphila DSM 44928 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 1.249178284 1.232595792 1.176399228 1.238159007 1.185431089 1.253067815 1.171684203 1.208481596 1.210842657 1.190846582 1.17302228 1.201550034 1.173227595 1.172398749 1.122112617 1.185380802 1.251780088 1.215654544 261366082 arsc Subdoligranulum variabile DSM 15176 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Subdoligranulum;species:Subdoligranulum variabile; 0.854065273 0.814043087 0.808277129 0.857336419 0.864140501 0.837411119 0.88488209 0.883539437 0.843298062 0.820762709 0.820489609 0.870436709 0.826508898 0.827150453 0.850196528 0.997219387 161339353 catechol_b uncultured bacterium Organic Remediation Aromatics Other aromatics superkingdom:Bacteria; 0.762684423 0.817001857 0.801608875 0.807819672 0.807354573 0.825664697 223893552 fosa bacterium Ellin514 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobia subdivision 3;genus:Pedosphaera;species:Pedosphaera parvula; 0.933006921 0.91921071 0.944583178 0.953479204 0.924862478 0.93687089 0.933832246 0.933243765 0.921391467 0.933601549 0.901440224 0.951869633 0.837626351 0.896670514 0.782592555 0.811545636 0.904844636 0.909448808 118762756 vana Sphingomonas wittichii RW1 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 0.948131509 1.000501072 0.898261401 0.95659065 0.921381402 0.991286717 0.895831113 0.933502479 0.924960961 0.920316041 0.890515597 0.910292068 0.897148143 0.879874583 0.880479261 0.894768616 0.94586039 0.969598543 357070885 amyA Frankia sp. CN3 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 0.979675218 0.978128678 0.990673 1.00357771 0.998025292 0.999681736 0.972515464 0.96330622 0.979065345 0.975434744 0.985044587 0.985553175 0.972535468 0.96598675 0.954783054 0.990838822 0.996913894 0.991945694 77961891 phn Yersinia mollaretii ATCC 43969 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia mollaretii; 1.053647101 1.015634733 0.941697704 1.042883095 0.982293009 0.982388016 0.989903829 1.008306004 1.075147019 1.008779463 0.942209091 1.017603582 0.898850357 0.93978657 0.905712967 0.985961333 1.02597297 1.033838285 313587715 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.833486994 0.836936735 0.7978798 0.842321938 0.807228778 0.783778876 0.833956975 0.860368244 0.817547821 0.799819876 0.796778559 0.857898214 218131010 amyA Bacteroides eggerthii DSM 20697 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides eggerthii; 0.818716242 0.8152057 0.816242435 0.775674456 0.811623154 0.78727994 229448281 pula Bacteroides sp. 2_2_4 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides; 0.813518255 0.829038642 0.819407632 0.822644939 0.793720599 0.840426439 0.829723683 14039125 gdh Thermococcus waiotapuensis Nitrogen Ammonification NA superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Thermococcus; 0.960683191 0.950119132 0.968584098 0.989283335 0.966413945 0.972351377 0.967299938 0.986290653 0.989623642 0.944876649 0.968355416 0.969955178 0.939809112 0.901398179 0.889151613 0.909082731 0.960881517 0.939403985 111026255 chnb Rhodococcus sp. RHA1 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 1.062465267 1.028657157 1.053345008 1.069836929 1.015862675 1.022715565 1.025245736 1.034752885 1.037076353 1.021837159 1.031463295 1.064809585 1.003045348 0.99196421 0.989044592 1.000848095 1.035132327 1.006118748 225388599 amyA Clostridium asparagiforme DSM 15981 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium asparagiforme; 0.873892779 0.86684443 0.869827901 0.902240255 0.896019813 0.87448713 0.904918129 0.944892012 0.902413047 0.865512518 0.865378677 0.877116196 0.879161985 0.847363062 0.917882502 0.862801767 0.845329354 0.860891344 357018965 ppx Mycobacterium thermoresistibile ATCC 19527 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium thermoresistibile; 0.826392502 0.825957507 114548970 mer alpha proteobacterium HTCC2255 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 1.196776427 1.16738054 1.186358784 1.21994502 1.203776621 1.193901958 1.198444308 1.206090974 1.180738626 1.199609051 1.221529712 1.207195832 1.178408491 1.157138767 1.148869662 1.167745567 1.188721225 1.170367312 317131735 amyA Ethanoligenens harbinense YUAN-3 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ethanoligenens;species:Ethanoligenens harbinense; 0.816941254 0.866651394 0.770724727 0.802410318 85719208 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 1.032336824 1.044583593 1.019016742 1.045323617 1.016587266 1.038640733 1.016307953 1.057463053 0.981794323 1.011056323 1.065723115 1.015413781 1.000013345 0.999218556 0.97342847 1.000429906 1.063158666 0.996664979 377537727 terc Mobilicoccus pelagius NBRC 104925 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dermatophilaceae;genus:Mobilicoccus;species:Mobilicoccus pelagius; 1.293879295 1.302602117 1.272711562 1.301450826 1.275706426 1.301918796 1.244811842 1.273283784 1.242891981 1.243611157 1.250167226 1.274645872 1.247508403 1.246889653 1.249109089 1.269928328 1.313643238 1.293109268 223510876 mer Ricinus communis Metal Homeostasis Mercury Detoxification superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Streptophyta;order:Malpighiales;family:Euphorbiaceae;genus:Ricinus; 1.466760883 1.436946064 1.411444393 1.491345625 1.425937347 1.444958745 1.424514943 1.478988434 1.454563552 1.418408004 1.445174716 1.483123769 1.384474216 1.376818907 1.404136456 1.423126895 1.435179672 1.414383116 35212122 nira Gloeobacter violaceus PCC 7421 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Cyanobacteria;class:Gloeobacteria;order:Gloeobacterales;genus:Gloeobacter;species:Gloeobacter violaceus; 1.126185709 1.115726245 1.110668228 1.072596006 1.085770564 1.118665691 1.04453332 1.075413362 1.101687873 1.085462294 1.070983932 1.086781166 1.02880072 1.05135249 1.062853831 1.049141957 1.109477111 1.07752514 333809996 exaa(moxf) Methylomonas methanica MC09 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylomonas;species:Methylomonas methanica; 0.925749162 0.926360484 1.000988561 0.957246704 0.952496892 0.986869392 0.967680222 0.980702526 0.90747861 0.924206223 0.999408589 0.916459029 0.904955023 0.857689677 0.87476192 0.886845259 0.942021295 0.96783581 256726695 phospholipase_C_fungi Nectria haematococca mpVI 77-13-4 Carbon Cycling Carbon degradation Phospholipids superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Nectria;species:Nectria haematococca; 0.789725713 0.837818496 0.857884913 0.776575302 0.814515566 0.900347246 0.873782855 0.792628852 0.863047379 0.849631014 116804542 nasa uncultured prokaryote Nitrogen Assimilatory N reduction NA 0.996342329 1.007133737 1.021887552 0.987147304 1.001135556 1.036066391 1.004720918 1.006723102 1.000834519 1.046092154 0.995189978 0.988821413 0.977649101 1.006121889 0.966285688 0.997737163 0.997202376 1.019707008 256361016 acetylglucosaminidase Catenulispora acidiphila DSM 44928 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 0.825790716 0.857869281 0.865134058 0.821320431 297198435 ara Streptomyces sviceus ATCC 29083 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 1.161365537 1.13049724 1.136022766 1.12359779 1.05967181 1.118697235 1.050282632 1.102984537 1.133859052 1.105408856 1.100542276 1.077096786 1.107608058 1.067939719 1.031838993 1.063171312 1.132235664 1.127141938 308212885 alkb uncultured bacterium Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria; 0.92987885 0.85146671 0.872696101 0.92829164 0.851549267 0.910985218 0.898356302 0.908565223 0.936398282 0.902512684 0.844932098 0.928452649 0.841794851 0.881722699 0.80174185 0.869341419 0.891583427 0.87623889 302196834 CsoS1_CcmK Clostridium saccharolyticum WM1 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium saccharolyticum; 0.90575475 0.924044752 0.908984577 0.903996846 0.962714989 0.824543685 0.835243537 0.86532398 0.899904225 0.901488105 0.836344439 0.910088056 0.820514706 0.916573094 0.956440045 304404944 bphF1 Paenibacillus curdlanolyticus YK9 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus curdlanolyticus; 1.127818369 1.112665608 0.963941803 0.928035276 0.959335352 0.909524481 0.948707198 1.012886554 1.083436746 0.935833134 0.94370882 1.003105175 0.929553777 0.915238943 0.879750709 0.890573139 0.984418936 403310159 mult_ring_12DiOx uncultured bacterium Organic Remediation Aromatics Other aromatics superkingdom:Bacteria; 0.842341568 0.811575374 0.891159081 0.918602101 0.800238991 0.842247294 0.808511931 0.883621644 0.817436094 0.829057121 0.837300694 0.841679627 0.847934678 0.821390299 70672905 nifh uncultured nitrogen-fixing bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 1.08135977 1.01431906 1.059005741 1.049088409 1.08035486 1.060433936 1.068683417 1.063569449 1.039667977 1.034576068 1.041444985 1.029079746 1.041116253 0.984983121 0.999562015 1.001829562 1.063000225 1.020382322 239798395 ara Desulfovibrio magneticus RS-1 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio magneticus; 1.193863155 1.171974421 1.136698612 1.191798839 1.163007834 1.167112708 1.189460288 1.164181987 1.18663897 1.198910541 1.189795799 1.186265445 1.135354541 1.119702136 1.129239382 1.16925451 1.189750402 1.163899248 126105521 phenol_oxidase uncultured fungus Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi; 0.860246398 0.835191634 0.862082419 0.878478915 0.879554071 0.870991926 0.871605961 0.862506522 0.915140854 0.841050014 0.846906554 0.847841618 0.852253064 0.805383572 0.83144056 0.785191506 0.84647441 358244691 terc Gordonia araii NBRC 100433 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia araii; 0.97189844 0.981429004 0.974916048 0.963970118 0.969042022 0.976336194 0.921579329 0.970919382 0.977316216 0.956323908 0.934437337 0.979591114 0.946352566 0.946427955 0.935474113 0.963359224 1.041674636 0.989862317 119451640 PRI marine gamma proteobacterium HTCC2143 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 0.833772366 0.850083337 0.848175108 0.828771613 0.783267418 0.83293859 0.827128349 0.836647582 0.822099343 0.802103145 0.813296832 302404451 exoglucanase Verticillium albo-atrum VaMs.102 Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticillium;species:Verticillium alfalfae; 0.834740936 0.828722586 0.923120524 0.856671744 0.825221175 0.855909429 0.869210497 0.826637178 0.82777572 0.876410463 0.831488317 87118435 alkk Marinomonas sp. MED121 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Marinomonas; 1.081135963 1.026066986 1.063867373 1.056192916 1.00903229 1.080576231 1.014921322 1.055009538 1.093844251 1.06334721 1.046482478 1.051314469 1.024571406 1.053052778 1.022731481 1.062217946 1.125355812 1.088394204 330812307 tktA Pseudomonas brassicacearum subsp. brassicacearum NFM421 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas brassicacearum; 0.991783769 0.980426082 1.025448344 1.016383068 0.924606643 0.97997788 0.920273098 0.972637775 1.000311606 0.984550405 0.98260852 0.996628351 0.973293283 0.913722275 1.014595062 0.941290612 1.006522567 1.001386332 317125522 amyA Intrasporangium calvum DSM 43043 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Intrasporangium;species:Intrasporangium calvum; 1.099342611 1.129248419 1.097904095 1.122589964 1.096500373 1.13061689 1.098991276 1.156058338 1.078709006 1.107047324 1.123601917 1.116821167 1.07233693 1.084283203 1.029143594 1.083037479 1.143088704 1.129372067 227113492 rgl Pectobacterium carotovorum subsp. brasiliensis PBR1692 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium carotovorum; 0.827377175 0.851574131 0.834563057 0.807112044 0.886804233 0.836995311 389939812 catechol Burkholderia terrae BS001 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia terrae; 1.046783754 1.005052972 1.004404274 1.078214609 0.979595235 1.028243207 1.007636376 1.049058672 1.063014522 1.006829456 1.018688925 1.039591057 0.989700785 0.981641949 1.03411173 1.004046433 1.101023199 0.963800942 347548541 ccmL Listeria ivanovii subsp. ivanovii PAM 55 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Listeriaceae;genus:Listeria;species:Listeria ivanovii; 0.955977012 0.987768324 0.953982981 0.996203169 0.966798946 0.972228557 0.989129229 0.943477582 1.004034819 0.976520759 0.968929806 0.953107676 0.936296124 0.893513459 0.916594492 0.908043149 0.984635744 0.988629865 347759984 TIM Gluconacetobacter xylinus NBRC 3288 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter xylinus; 0.931729221 0.926800261 0.86984177 0.942679635 0.869952106 0.909933169 0.925140981 0.923175435 0.909111816 0.939737385 0.859608155 0.908868229 0.814692389 0.837843897 0.853333648 0.877081024 0.92928769 0.9422079 159178253 pgk alpha proteobacterium BAL199 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 1.185984412 1.170292929 1.166815225 1.182993424 1.172865703 1.182226475 1.146878776 1.158538817 1.172601022 1.132049763 1.142244113 1.174390241 1.152321377 1.12636664 1.131316924 1.156967947 1.188809216 1.143428536 304359 cellobiase Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas; 1.135919384 1.193725114 1.113739735 1.102578032 1.10959409 1.131024467 1.077382262 1.114875772 1.133455417 1.127872236 1.061089117 1.107647532 1.054565684 1.083515393 1.042019444 1.063942824 1.124306157 1.123393413 340810088 amyA Thermococcus sp. 4557 Carbon Cycling Carbon degradation Starch superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Thermococcus; 1.19386527 1.183849526 1.168389107 1.185033483 1.164076225 1.158432167 1.141786379 1.156354441 1.166044156 1.144442653 1.166295143 1.160209245 1.197035493 1.150419245 1.13915281 1.163077975 1.171259214 1.144533171 66801865 narg unidentified bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.071091753 1.045128929 1.039489897 1.029263045 1.057803811 1.073928351 1.059660373 1.00522337 1.021803377 1.071042016 1.028965397 1.058287666 1.006020288 1.048355875 1.054445683 1.025166628 1.104852968 1.083940739 225412296 vdh Clostridium asparagiforme DSM 15981 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium asparagiforme; 0.979005072 0.936264024 0.945082198 0.990504196 0.993563225 0.932195869 0.994505983 0.978730779 0.935334615 0.983681261 0.91986606 0.964666637 0.961772239 0.980089565 0.855113395 0.90736319 0.961643201 0.953176703 145218136 cutinase Mycobacterium gilvum PYR-GCK Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 0.796671005 0.804343181 0.787241116 0.86042775 0.793159931 0.78556827 0.773133084 0.830495377 126740002 PRI Roseobacter sp. SK209-2-6 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 0.882708268 0.922426519 0.916423557 0.895239926 0.95726504 0.905355907 0.935596366 0.947258677 0.951496054 0.909515595 0.934714736 0.901722445 0.864986656 0.879707057 0.857473577 0.869160811 0.94758502 0.997602793 341614436 limeh Citromicrobium sp. JLT1363 Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Citromicrobium; 0.962010184 0.912731044 0.878377137 0.928068249 0.924480115 0.824168871 0.908183417 0.941685061 0.920918396 0.876811759 0.889116782 0.8455149 0.954984149 0.933967422 242825658 protease_serine_fungi Talaromyces stipitatus ATCC 10500 Carbon Cycling Carbon degradation protein superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 0.856969102 0.8266927 0.839604096 0.841863508 0.809507441 0.799247507 0.821062969 0.820950798 0.786439683 0.842793971 0.872968633 319754356 xylanase Deinococcus maricopensis DSM 21211 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus maricopensis; 1.063519496 1.038889176 0.971225047 0.989994709 0.935869857 1.029344784 0.986604645 0.958501916 1.013161228 0.979002132 0.979053159 0.984599086 0.972983382 0.981518579 0.945421599 0.960231437 1.027837472 0.987469936 384083133 PRI gamma proteobacterium HIMB30 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 1.068140829 1.051121064 1.037274641 1.049259797 1.036025296 1.086670234 1.064603533 1.052493543 1.053447022 1.066300924 1.012042309 1.065301728 0.97792266 1.007212962 0.962624696 0.972712767 0.998417106 1.014705975 83845564 alkk Sulfitobacter sp. EE-36 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 1.027907185 1.048158804 1.017386345 1.019280057 0.999150087 1.049234858 1.004236156 1.03289723 1.031143512 0.984996546 0.975442913 1.043389279 0.953475533 0.984891329 0.892097844 0.952197765 0.985625087 0.99445396 404263910 atzd Bradyrhizobium sp. CCGE-LA001 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 1.03406673 0.979289711 1.005180081 0.995372612 1.009933964 1.010536396 1.00801079 1.017161534 1.027040978 1.033164393 1.010464419 1.008693359 0.944091442 0.938028026 0.911790597 0.963913853 1.02450154 1.010065733 116633904 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.743579018 0.842906985 255924371 amyA Actinosynnema mirum DSM 43827 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinosynnemataceae;genus:Actinosynnema;species:Actinosynnema mirum; 0.995862114 0.964465795 0.963939235 1.008277554 0.943132983 0.966611217 0.945252393 0.962431878 0.997518177 0.937160836 0.938029173 0.985493256 0.949829527 0.960781202 0.959269597 0.954240364 0.996961528 0.942028454 302417940 cpna Verticillium albo-atrum VaMs.102 Organic Remediation Other Hydrocarbons NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticillium;species:Verticillium alfalfae; 0.93611614 1.033854882 0.849396546 0.930862268 0.951315315 0.941383777 0.912893233 0.923034451 0.924164382 0.943914869 0.88876809 0.872043194 0.921574577 0.906682662 0.846099682 0.903158029 0.937462741 0.983999013 325052131 exaa(moxf) Acidiphilium multivorum AIU301 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acidiphilium;species:Acidiphilium multivorum; 1.104217846 1.090899765 1.14525123 1.153814794 1.142247057 1.092369875 1.142164144 1.144890787 1.125756975 1.087759539 1.111698496 1.119567223 1.085550115 1.054009447 1.078007227 1.066955542 1.092338142 1.088095935 290959353 ppk Streptomyces scabiei 87.22 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces scabiei; 1.130091586 1.113472944 1.104606572 1.116541903 1.082583353 1.137804414 1.075081867 1.129068339 1.100576487 1.095156413 1.066110896 1.125312319 1.052950524 1.089012098 1.031703762 1.094225146 1.111438651 1.131155261 212171514 alkb uncultured bacterium Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria; 0.958326326 0.936911977 0.908469311 0.923836664 0.921062966 0.928602647 0.946275998 0.880554312 0.943921928 0.92848138 0.923001708 0.942929137 0.851878418 0.843599885 0.794612616 0.862320834 0.939768588 0.945807828 326780694 cysJ Streptomyces cf. griseus XylebKG-1 Sulfur Reduction NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseus; 1.259662525 1.250849991 1.319491621 1.244980072 1.184089762 1.252220237 1.190065545 1.2044805 1.243918263 1.221134633 1.208702418 1.18205674 1.158797522 1.220541504 1.162793367 1.220008626 1.257949762 1.239417138 311282788 catechol Pseudomonas fluorescens WH6 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 1.0069156 0.992575281 1.002488062 1.032800667 1.042734959 0.954223531 1.018176525 1.03340968 1.057071108 0.953507262 0.992522071 1.079885953 0.981865079 0.953734216 1.006717426 0.977899014 0.997440115 0.966788741 225684630 phospholipase_A2_fungi Paracoccidioides brasiliensis Pb03 Carbon Cycling Carbon degradation Phospholipids superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;genus:Paracoccidioides;species:Paracoccidioides brasiliensis; 0.797846567 0.804070082 0.840130502 0.784996565 0.82099774 0.80585236 0.845192784 0.870735816 223714334 arra uncultured bacterium Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 0.942444835 0.949430544 0.979585032 0.974647655 0.903795454 0.925986034 0.941681513 0.903367749 0.974010432 0.94760393 0.930507344 0.950394793 0.913776676 0.893368794 0.912827293 0.911924945 0.982768311 0.957050077 89350572 bphF1 Xanthobacter autotrophicus Py2 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 1.106638457 1.084323453 1.083710966 1.166034162 1.129695316 1.109063022 1.127661874 1.121268691 1.124083671 1.088635769 1.099588597 1.129910354 1.127256883 1.057867011 1.073963212 1.113262258 1.149382326 1.077919995 170768691 gdh Escherichia albertii TW07627 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia albertii; 0.781727453 0.858598125 0.815705243 0.844232765 0.829749067 0.820694705 0.873457184 0.84835184 0.794727255 0.791363838 0.892919044 171060442 fccab Leptothrix cholodnii SP-6 Sulfur Sulfide Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Leptothrix;species:Leptothrix cholodnii; 1.26933508 1.27277394 1.199644765 1.23150177 1.205578631 1.237005211 1.170845979 1.212424427 1.222589387 1.204744124 1.185554417 1.217104332 1.202574688 1.189734482 1.129376773 1.185430317 1.237904564 1.256289244 299772624 Bacteriorhodopsin uncultured bacterium Secondary metabolism Pigments Rhodopsin superkingdom:Bacteria; 1.216257226 1.186499485 1.176253813 1.20529636 1.159569143 1.228066678 1.158648556 1.194887452 1.192910487 1.218339876 1.177613657 1.198789559 1.197727793 1.143415189 1.20338594 1.158413173 1.229173592 1.180119101 308048812 amyA Ferrimonas balearica DSM 9799 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Ferrimonadaceae;genus:Ferrimonas;species:Ferrimonas balearica; 0.845638106 0.875164903 0.864063175 0.856724952 0.9274565 0.82748556 0.844988449 0.820205731 0.934442971 0.838137081 0.812940218 0.844506282 0.848700967 0.917675623 4157975 pectinase (pectate_lyase) Erwinia chrysanthemi Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya; 0.852157872 0.868083171 0.863832691 0.861611673 0.845840799 0.831309891 0.843222648 0.801415325 0.841514463 0.883227201 189306742 endochitinase Chaetomium thermophilum Carbon Cycling Carbon degradation Chitin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium; 0.846874328 0.864294952 0.887454027 0.876866749 0.852512746 0.857146849 0.87283826 0.830763091 0.812600708 0.840734743 0.830071542 0.810366332 0.815814698 0.828990586 0.830502109 0.872594471 0.882823268 304345387 amyA Paenibacillus curdlanolyticus YK9 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus curdlanolyticus; 0.932755259 0.86128959 0.935791348 0.984826986 0.914505255 0.934816767 0.959714932 0.979090844 0.894198318 0.860604362 0.916099632 0.923109331 0.910751318 0.864020762 0.903757556 0.920635311 0.961616701 0.91495631 139003174 nifh uncultured nitrogen-fixing bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.77897269 0.799021544 0.791086594 0.829677994 0.821940945 198272140 pula Bacteroides plebeius DSM 17135 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides plebeius; 0.977513661 0.976803679 1.001488264 1.006419179 0.985797027 0.958351813 0.95232342 0.936614404 0.957799023 0.931493259 0.964638353 0.965155238 0.969280836 0.913228552 0.964082627 0.954622539 0.96066016 0.952705121 229818403 fthfs Bifidobacterium angulatum DSM 20098 = JCM 7096 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium angulatum; 0.902811347 0.919624525 0.844820162 0.850116728 0.840808939 0.895639484 0.899442908 0.867698925 0.893797133 0.874834925 0.900804831 0.895878682 0.884604029 0.901980066 171685436 phenol_oxidase Podospora anserina Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Lasiosphaeriaceae;genus:Podospora;species:Podospora anserina; 0.832453756 0.94696411 0.89369178 0.834790404 0.925370744 0.842049408 0.851163398 0.810071511 0.927530309 0.842065827 0.847225323 0.882688495 0.854222499 0.834445743 0.925426852 85835814 amyA Vibrio sp. MED222 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 0.853732742 0.810171041 0.868229495 0.802502553 0.850471386 0.824174494 0.824809148 0.865868921 0.831351717 32698489 mdlc Sphingomonas paucimobilis Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 1.055387468 1.083396975 1.051636009 1.042953964 1.100170473 1.108601858 1.069048419 1.067255431 1.042565445 1.074202003 1.098317278 1.072639228 1.087702871 1.065897958 1.065952134 1.075265004 1.0822833 1.090930163 182435112 acetylglucosaminidase Streptomyces griseus subsp. griseus NBRC 13350 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseus; 1.057028479 1.113342095 1.046844482 1.064962931 1.048017705 1.085048182 0.993057478 1.021230805 0.981323093 1.038543149 1.033897784 1.03677136 1.038003309 1.03033589 1.07408776 1.005926827 1.077026464 1.102236208 390618455 linb Mycobacterium chubuense NBB4 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium chubuense; 0.891192652 0.871134902 0.959024069 0.931342188 0.926992031 0.872554915 0.893844604 0.914276924 0.887990021 0.92637565 0.952436488 0.945225961 0.853651705 0.878078958 0.932844952 0.854190261 0.870104776 0.858724516 224027921 aps_apra uncultured gamma proteobacterium Sulfur adenylylsulfate reductase NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 1.160834449 1.133150803 1.160565482 1.169258615 1.093422191 1.148165031 1.11602063 1.140524889 1.14135182 1.153003438 1.119480904 1.195025335 1.084090549 1.124601776 1.106439476 1.127617372 1.180591034 1.115194734 91681988 tktA Rhodopseudomonas palustris BisB5 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 1.050144624 1.067339937 1.030308322 1.07161933 1.052857448 1.067017686 1.027837478 1.012966071 1.010016774 1.04406663 1.021568187 1.00840393 1.006874855 1.018194912 0.987131553 0.961742437 1.092639465 1.065092748 422314473 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.197776509 1.323172694 1.146682617 1.172076403 1.114314749 1.146309733 1.112822974 1.136812952 1.167421329 1.147975317 1.121262202 1.147918263 1.090493713 1.083418051 1.080505968 1.107569948 1.185328555 1.173450263 3038 nitrate_reductase Neurospora crassa Nitrogen N Assimilation NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Neurospora; 0.80862073 0.921865956 0.803392642 0.803289587 0.800900894 0.835943482 0.812451894 91799470 glucoamylase Nitrobacter hamburgensis X14 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter hamburgensis; 0.897875539 0.836319628 0.974031089 0.862685037 0.880806118 0.929685066 0.89675396 0.871013055 0.834903392 0.906854494 0.900135951 0.853942633 0.795074035 0.848877965 0.816631485 0.832886188 0.873666514 0.863551336 7380320 ppx Neisseria meningitidis Z2491 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria meningitidis; 1.422039488 1.434257758 1.372717202 1.379315092 1.364911062 1.425156744 1.368751293 1.382454844 1.367024113 1.402789136 1.375961147 1.387925032 1.353496279 1.368019692 1.361509961 1.375713402 1.385880527 1.402523303 159043702 cysI Dinoroseobacter shibae DFL 12 Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 0.909233033 0.939164209 0.905245044 0.970979221 0.939424056 0.970123261 0.940829595 0.990162675 0.945105377 0.941729116 0.937346988 0.963410628 0.937913267 0.907299419 0.867194941 0.905803965 0.957344619 116013350 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.896451639 0.901871326 0.823243481 0.903388835 0.817570029 0.923663111 0.855367088 0.83524192 0.810922965 0.809837355 0.862313729 0.847587672 0.867834482 0.902629156 0.906273837 219679499 cpna gamma proteobacterium NOR51-B Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 1.140629991 1.152160233 1.131061372 1.163622863 1.142184608 1.162248491 1.140369098 1.150297025 1.146273633 1.138428542 1.12977961 1.131055673 1.109272904 1.073814092 1.081940319 1.113920058 1.145866273 1.118327798 284447578 nitrate_reductase uncultured eukaryote Nitrogen N Assimilation NA superkingdom:Eukaryota; 0.943105679 0.93334206 0.829537005 0.901322773 0.861949341 0.875599268 0.819369035 0.893442735 0.921465355 0.855818773 0.837111111 0.88070967 0.857765799 0.84167822 0.844946671 0.905674853 0.890503634 133778506 endochitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 1.132941235 1.083863182 1.132300508 1.120616719 1.051845099 1.096613371 1.070354761 1.086528949 1.110125931 1.094011809 1.066240105 1.092701517 1.04895163 1.034850412 1.051307978 1.06480587 1.143498725 1.110610405 355539814 PRI Agrobacterium tumefaciens CCNWGS0286 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 0.854134937 0.841900339 0.83075527 0.865218823 0.831527211 0.83591161 0.839231009 0.824554077 0.833726279 0.793457351 0.821646718 0.850349906 0.833778577 0.812628216 0.818672701 0.845343471 0.823292906 41395720 amyA Mycobacterium avium subsp. paratuberculosis K-10 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 1.059890266 1.050044763 1.04894399 1.019584502 1.039815914 1.066312607 1.075173107 1.061010232 1.005659138 1.042405758 1.045792502 1.028423329 0.994250926 0.998612392 0.954631868 0.973004896 1.040819353 1.007229631 284176974 tfth Pseudomonas sp. 1-7 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 1.23252028 1.218005783 1.22043116 1.238407742 1.222800326 1.247887605 1.208501193 1.223573252 1.210738968 1.200150369 1.20614091 1.2279534 1.238812964 1.176471908 1.225199328 1.19523292 1.258211172 1.218259381 171853191 ppx Sinorhizobium meliloti Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium; 1.32506901 1.297441378 1.321178192 1.325831349 1.31787563 1.335040382 1.320548297 1.338177996 1.309318286 1.296876489 1.313596546 1.329716275 1.292735638 1.271664803 1.293573271 1.293339723 1.300993588 1.28842864 219939234 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.903649941 0.890146771 0.953432246 0.949836164 0.872960332 0.900825831 0.855272188 0.916657722 0.940848973 0.856712633 0.906221098 0.910023587 0.881937988 0.877227151 0.864507146 0.900845477 0.940587311 0.867153332 164637301 phenol_oxidase Laccaria bicolor S238N-H82 Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Tricholomataceae;genus:Laccaria;species:Laccaria bicolor; 0.95069841 1.008036136 0.928630538 0.939959936 0.986261645 1.005258141 0.939348487 0.920619724 0.898927475 1.013961119 0.927337251 0.971195396 0.924910005 0.946098269 0.895245422 0.935485067 0.919860206 0.986333001 83316626 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.104669564 1.120521579 1.079988851 1.116648896 1.074243026 1.09881361 1.102315433 1.093647435 1.073338231 1.089176368 1.119836093 1.117760907 1.068042237 1.073447003 1.039262377 1.062001132 1.12002479 1.073510021 109452503 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.782004337 0.832989642 0.802407774 0.78278039 0.822042375 0.810838263 0.835613673 0.803034555 408780493 linb Mycobacterium kansasii ATCC 12478 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium kansasii; 0.830042055 0.804035769 0.836776256 0.854553286 0.878284986 0.845129509 0.848445204 0.824788958 0.815993012 0.866806521 0.825430495 0.810697504 0.881334065 0.814421887 0.846094724 379065403 amyA Pseudomonas stutzeri ATCC 14405 = CCUG 16156 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 1.019269628 1.009851055 1.073201059 1.051683706 0.920353705 1.026182541 0.935617542 0.987180042 1.023424605 0.974108202 0.974131349 1.000848711 0.969895476 0.95053995 1.024229133 1.027399198 55232184 nirk Haloarcula marismortui ATCC 43049 Nitrogen Denitrification NA superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloarcula;species:Haloarcula marismortui; 1.030106742 0.896561636 0.905898031 0.97293911 0.973055079 0.934125887 0.952184093 1.020020434 1.006324385 0.923371386 0.8093523 0.989210572 0.896241202 0.85821398 0.921936954 0.932600288 0.990051235 0.943547365 148507549 bphF1 Mycobacterium tuberculosis H37Ra Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tuberculosis; 1.030677891 1.005592811 0.970727586 1.029151867 0.959663189 0.990292102 0.977588657 1.048231928 0.994127735 0.980084288 0.982177418 1.020453983 0.962616355 0.975674194 1.00260281 0.962409042 1.008898061 1.003611434 145570252 catechol Pseudomonas stutzeri A1501 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 0.978337251 0.957097326 0.917680986 0.987028561 0.92584819 0.971817715 0.922722208 0.949229192 0.97228517 0.948816773 0.928104422 0.961837712 0.909303523 0.950681787 0.916332484 0.974851122 0.982813129 0.977717578 211905607 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.877813872 0.900647071 0.872558615 0.912236322 0.917970479 0.884173036 0.802738301 0.819023724 0.860740197 0.896394743 0.829978208 0.844940751 0.904798273 0.856400386 0.859986206 0.881431985 0.885855482 21674899 amyA Chlorobium tepidum TLS Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobaculum;species:Chlorobaculum tepidum; 0.941033036 0.993118032 0.967091491 0.910579541 0.969564344 0.982048311 0.91478715 0.934799346 0.957914567 0.942998278 0.924317262 0.994188165 0.926466723 0.889469852 0.927480486 0.933075861 0.981100148 0.973943953 194348561 arsc Stenotrophomonas maltophilia R551-3 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 0.820138447 0.793054827 0.833391495 0.806947184 0.81844364 0.844072528 0.82594792 0.847820636 0.77145839 0.836214614 0.802854743 0.787877956 0.843145 374096599 vana Streptomyces hygroscopicus subsp. jinggangensis 5008 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces hygroscopicus; 0.946417415 1.015017444 0.989424107 0.950091857 1.017221752 1.036065186 0.96908913 0.988026019 0.962139082 0.997922628 1.041214185 0.999629048 1.011293216 1.020535944 0.990086175 0.992433822 0.957216008 1.009668636 73660244 mer Dehalococcoides sp. CBDB1 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 1.028428336 1.059126711 1.046221136 1.051845229 1.038295103 1.079263506 1.027570047 1.004834327 1.009361228 1.024942145 1.09464077 1.036382528 1.029851144 0.981266163 0.953544015 1.102915265 1.047498605 1.054287215 330446291 chitinase Photobacterium leiognathi subsp. mandapamensis svers.1.1. Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium leiognathi; 0.772208985 0.837847092 0.762383447 0.834234341 78187837 frdA_rTCA Chlorobium luteolum DSM 273 Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Pelodictyon;species:Pelodictyon luteolum; 0.843699084 0.855822042 0.822054286 0.868531144 0.88865237 0.904183902 0.877507558 0.852099475 0.846196992 0.842649054 0.823230123 0.804258886 0.843338269 0.8505391 392289826 amyA Frankia sp. QA3 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 1.228162021 1.257372933 1.177927492 1.28511153 1.1825795 1.217250519 1.214524634 1.154024715 1.214382459 1.166975004 1.169186922 1.224049968 1.1732632 1.162479971 1.117708103 1.186118748 1.241504427 1.161655941 39650472 arsc Rhodopseudomonas palustris CGA009 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 1.205694404 1.194425885 1.173469325 1.179105256 1.180321504 1.1987762 1.146191757 1.178335798 1.163799119 1.163044764 1.168196035 1.186053803 1.158781573 1.181987608 1.142731716 1.193115423 1.187233983 1.171697714 116699055 codh Syntrophobacter fumaroxidans MPOB Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophobacteraceae;genus:Syntrophobacter;species:Syntrophobacter fumaroxidans; 0.866027529 0.921034041 0.893976738 0.881234768 0.827948671 0.874399721 0.819277918 0.888605144 0.925095341 0.878570884 0.840770135 0.832465529 0.775099585 0.867278919 0.842637443 0.849882372 0.876753816 0.942009424 189198594 axe Pyrenophora tritici-repentis Pt-1C-BFP Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 0.791244853 0.855386851 0.898367688 0.862616345 0.86286836 0.889913969 0.827691889 0.868137152 0.893367493 0.895492638 0.953600337 0.882807373 0.838940816 0.883248831 0.917003295 0.929752848 0.805857094 0.879988627 343799306 fccab Thiocapsa marina 5811 Sulfur Sulfide Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiocapsa;species:Thiocapsa marina; 0.881735998 0.831259408 0.804512327 0.939864242 0.863257858 0.820500465 0.827412984 0.827621296 0.823240923 340346789 acetylglucosaminidase Prevotella dentalis DSM 3688 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella dentalis; 1.119465237 1.100606273 1.090757302 1.109704393 1.081741159 1.119012545 1.040874951 1.054865725 1.076676584 1.036380004 1.022777224 1.063525028 1.041659707 1.035061076 1.013751653 1.030358973 1.106465028 1.092537141 292560773 aoxb uncultured bacterium Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 0.976795912 1.009772826 1.002754658 0.989820053 1.028394914 1.040681701 1.001156898 1.032172547 1.005129751 1.051847613 1.030417842 1.025821691 1.0044293 1.010465262 1.013616812 1.006734281 1.000989296 1.053512661 780717 nifh unidentified marine eubacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.887008899 0.900286322 0.879888386 0.877777502 0.875940593 0.911084194 0.89028488 0.883857989 0.902523123 0.895347364 0.881657083 0.891728232 0.881124001 0.878870149 0.822548101 0.874719687 0.885746442 0.912421095 83318826 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.791403748 0.786226298 0.804588645 0.822324435 0.816795036 0.786870334 194292621 arsc Cupriavidus taiwanensis Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus; 0.936917625 0.941178931 0.919950894 0.913874729 0.842183554 0.911572813 0.864770117 0.895987855 0.881440612 0.849151935 0.849242504 0.873687964 0.824843264 0.834228635 0.818117287 0.854175582 0.925977823 0.917411444 167351638 nitrilase Caulobacter sp. K31 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 1.281231354 1.266970621 1.252499078 1.276453875 1.240120044 1.276327871 1.238105727 1.247474502 1.283256026 1.292273203 1.330461815 1.311266254 1.253936521 1.165569637 1.206847886 1.196266405 1.257243981 1.239667735 334364429 amyA Alistipes sp. HGB5 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Rikenellaceae;genus:Alistipes; 1.104804464 1.051039589 1.054631778 1.077224229 1.038889585 1.051778023 1.044867503 1.072463469 1.065972742 1.047610402 1.053462978 1.06843183 1.040863321 0.966475697 0.991029705 1.028287524 1.079023097 1.022876415 294981247 ara Zunongwangia profunda SM-A87 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Zunongwangia;species:Zunongwangia profunda; 0.766623844 0.787123766 0.836291201 0.869642915 0.805064713 0.817592201 0.835470346 0.800486387 0.777649891 0.83629245 395143789 xylg Pseudomonas putida Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.85268427 0.954595201 0.913899797 0.833039539 0.875673537 0.903028137 0.897573881 0.852241915 0.863485889 0.857759297 0.895074918 0.812614187 0.860594523 0.897218198 0.881554688 0.900636676 0.845594031 389736473 ppx Rhodanobacter sp. 115 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Rhodanobacter; 1.232059371 1.205231487 1.214006691 1.205944769 1.106458086 1.185583109 1.032609138 1.125408381 1.221596413 1.182997254 1.152542464 1.179020683 1.131202414 1.132598121 1.053157527 1.11574987 1.258774647 1.170234753 292677082 xylanase Sphingobium japonicum UT26S Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium;species:Sphingobium japonicum; 0.837137684 0.891000126 0.809124795 0.817348654 0.867710572 0.90264788 0.803993536 0.868643821 0.815425898 0.799909086 0.913122864 0.91928895 254788238 mannanase Teredinibacter turnerae T7901 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;genus:Teredinibacter;species:Teredinibacter turnerae; 0.98296281 0.998987944 0.933746883 0.993909127 0.947915172 0.951718774 0.930534708 0.976068356 0.865109614 0.945687195 0.893061298 0.949404903 0.917486625 0.898802587 0.818061585 0.967221738 0.978679918 0.999372709 297624899 amyA Truepera radiovictrix DSM 17093 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Trueperaceae;genus:Truepera;species:Truepera radiovictrix; 0.777246664 0.866482153 0.792633116 0.788396353 0.842548449 0.827829113 0.895895268 0.833692513 0.815673586 0.801469967 171318562 B_lactamase_A Burkholderia ambifaria MEX-5 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ambifaria; 1.145712532 1.122225995 1.169977605 1.175067641 1.135337911 1.145120034 1.13488661 1.19653068 1.136273251 1.136090112 1.144662049 1.155071238 1.1176233 1.122418864 1.157785583 1.151346088 1.130314735 1.131709293 218244809 SoxC Thermus aquaticus Y51MC23 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus;species:Thermus aquaticus; 1.030577367 1.048039458 1.033637657 1.068839355 1.065912063 1.044637294 1.068045531 1.076194483 1.039832466 1.048436555 1.03932335 1.0379779 1.017175577 1.017524473 1.046403659 1.018680996 1.012168397 1.003893817 333387834 amyA Centipeda periodontii DSM 2778 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Centipeda;species:Centipeda periodontii; 0.859241469 0.911733248 0.855359904 0.939906769 0.867224237 0.815343257 0.814921406 0.896807659 0.910235175 0.801660919 0.8975855 0.851188845 0.818838814 0.854655343 0.884272843 0.940110926 197710592 adpb Streptomyces sviceus ATCC 29083 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 1.089145786 1.084871469 1.113653013 1.074295155 1.121552176 1.118959038 1.111860737 1.104022876 1.080737528 1.09777416 1.094095622 1.07444506 1.070952171 1.066236021 1.019897218 1.050946614 1.104063322 1.085363832 120326977 mer Marinobacter aquaeolei VT8 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter hydrocarbonoclasticus; 0.976715664 0.945767302 0.965691682 0.992731962 0.975667448 0.993196868 0.988759425 0.984894131 0.957321059 0.974697294 0.978227021 0.975819406 0.910697651 0.923235849 0.907181273 0.934730684 0.975865772 0.997941194 384371434 one_ring_23diox bacterium enrichment culture clone pahAc1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria; 0.867973268 0.865119693 0.854162587 0.92321341 0.83479079 0.813431132 0.850365102 0.887281826 0.847443036 0.815923934 0.805688204 0.86212306 0.788716822 0.89391642 0.869055011 112462919 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.806798076 0.783381349 298113072 urec Streptomyces nodosus subsp. asukaensis Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces nodosus; 0.966420617 0.974005 0.95398711 0.959520737 0.949850913 0.971871259 0.978949578 0.956113594 0.947636727 0.987387829 0.913879163 0.963785064 0.892061482 0.94755421 0.936104905 0.940461905 0.938627211 0.994344197 121663854 tfth Rhizobium sp. MTP-10005 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 1.249017979 1.245045658 1.209977242 1.225529817 1.236697182 1.269331561 1.210872216 1.210438881 1.222602713 1.202003866 1.222977916 1.220978413 1.194258978 1.203213618 1.18912665 1.21092721 1.249036301 1.237557456 343928057 cysJ Gordonia alkanivorans NBRC 16433 Sulfur Reduction NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia alkanivorans; 0.915555983 0.974842404 0.852577734 0.935521648 0.890037621 0.941155409 0.897640635 0.891556319 0.889582839 0.903251538 0.85151674 0.908101933 0.884693073 0.87842794 0.896545237 0.938566954 0.927501063 344343444 FBPase Marichromatium purpuratum 984 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Marichromatium;species:Marichromatium purpuratum; 0.881883589 0.980327393 0.933012848 0.896056756 0.917146108 0.954372802 0.882475162 0.882149326 0.893352938 0.953956859 0.920806782 0.900267513 0.883808656 0.960941037 0.873337969 0.893368606 0.891161421 0.919638557 291445510 pectinase (pectate_lyase) Streptomyces roseosporus NRRL 15998 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces filamentosus; 0.840416862 0.995663241 0.832610867 0.836446025 0.877366099 0.821820882 0.822317953 0.849965256 0.824792356 0.82103528 0.827902346 0.884166443 63029785 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.210933366 1.180998734 1.182883774 1.160244058 1.156440862 1.193191084 1.110570448 1.150219301 1.137537015 1.16288518 1.102593139 1.14881384 1.166256937 1.153487532 1.119757711 1.162775883 1.208457101 1.16304312 56314660 arsc Azoarcus sp. EbN1 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 0.848495136 0.858981819 0.865379663 0.82959434 0.827465537 0.910980839 20803910 tktA Mesorhizobium loti R7A Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 1.02003239 1.028987007 0.961148168 1.034676037 0.953483903 0.978168975 0.932843015 0.937280403 0.949382835 0.994529061 0.944171117 0.985100879 0.933500706 0.977505355 0.917123372 0.977102554 1.078363416 1.032457005 218677536 nhh Rhizobium etli CIAT 894 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 0.810385096 0.809177594 229380270 ppx Oxalobacter formigenes OXCC13 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Oxalobacter;species:Oxalobacter formigenes; 0.806059904 0.835372933 88184564 pec_Cdeg Chaetomium globosum CBS 148.51 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 0.981671713 0.897524629 0.858608408 0.901908387 0.877928605 0.898754649 0.895444475 0.868408644 0.858507426 0.878961177 0.837099578 0.873984155 0.821443376 0.832052459 0.848154964 0.819501533 0.9013042 0.911314993 357079593 camdcab Frankia sp. CN3 Carbon Cycling Carbon degradation Camphor superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 0.977188437 0.983352427 1.02695746 1.029401057 1.013548818 0.999339543 1.026004936 1.009852664 0.99076347 0.991177675 1.031017294 1.000334412 0.959532419 0.921900366 0.897632493 0.920809612 0.987331994 1.042682724 344037203 xylanase Streptomyces violaceusniger Tu 4113 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces violaceusniger; 0.954751749 0.894516411 0.892925102 0.98952454 0.878965132 0.89159109 0.881340149 0.926237326 0.902039125 0.909078889 0.903967295 0.924508326 0.846984575 0.860539127 0.866902046 0.864790382 0.970454516 0.903812419 212636099 linb Shewanella piezotolerans WP3 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella piezotolerans; 0.891787657 0.851177748 0.847130927 0.805569094 0.854161047 0.856388451 0.872232297 0.852043351 0.94108701 0.85227089 0.893980442 0.861521836 0.871822227 0.867722722 0.904484638 0.823521185 0.941995417 302847052 mg_chelatase Volvox carteri f. nagariensis Secondary metabolism Pigments Chlorophyll superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Chlorophyceae;order:Chlamydomonadales;family:Volvocaceae;genus:Volvox;species:Volvox carteri; 1.043387031 1.0254911 1.042167919 1.008845261 1.055912786 1.060916061 1.026806052 0.988965221 1.004807204 1.064031009 1.008674814 0.965333429 1.031827481 1.018046748 0.988927932 0.989153934 1.000659019 1.034007089 237878261 one_ring_23diox Burkholderia glumae BGR1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia glumae; 1.118827625 1.074898342 1.104924291 1.14128883 1.107504349 1.131073083 1.132283195 1.120531061 1.107241997 1.055820522 1.070162971 1.101899369 1.043258349 1.05503899 1.01855538 1.0655748 1.13494778 1.134141034 152997053 catb Marinomonas sp. MWYL1 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Marinomonas; 0.900664218 0.832425869 0.876820159 0.954808801 0.893665375 0.871735602 0.895900665 0.910249108 0.951449887 0.866433176 0.853749565 0.854190352 0.855447522 0.838362021 0.803145576 0.904506771 0.858611699 240142534 chrr Methylobacterium extorquens AM1 Metal Homeostasis Chromium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium extorquens; 0.921830799 0.875762387 0.885387294 0.907711716 0.897083857 0.868889918 0.892159385 0.920130342 0.930437798 0.856785607 0.863667309 0.902380744 0.847850953 0.872970108 0.839343767 0.812388719 0.881917585 0.899546899 171989754 acetylglucosaminidase Exiguobacterium sibiricum 255-15 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium;species:Exiguobacterium sibiricum; 0.789499761 0.895098818 0.83426896 0.799173866 0.816225105 0.850986789 55724922 mcra uncultured methanogenic archaeon Carbon Cycling Methane Methanogenesis superkingdom:Archaea;phylum:Euryarchaeota; 0.817992154 0.8253168 0.84618232 0.813252243 0.801712257 0.802235083 0.823704328 0.819340878 0.863973292 238784332 ccmL Yersinia bercovieri ATCC 43970 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia bercovieri; 1.052284452 1.063055519 1.026135045 1.080198773 1.077159619 1.053401837 1.051447895 1.063550582 1.063069271 1.050459084 1.046917786 1.051269554 1.034429969 1.018554645 1.065042168 1.029953391 1.05524371 1.045072697 157320820 cysI Serratia proteamaculans 568 Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia proteamaculans; 1.03098917 1.009181458 1.017195326 1.022443946 0.970865468 1.042398448 0.964214741 1.002343718 1.031568871 1.004617882 1.004666833 0.984343855 0.990429004 1.001524989 1.00743313 1.003164282 1.015336968 1.039957118 329849563 vdh Asticcacaulis biprosthecum C19 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis biprosthecium; 0.841284345 0.87350057 0.836656181 0.862120995 0.810347678 0.823115085 0.817134731 0.849701443 0.805109523 0.83294658 0.834317932 0.860954346 0.84924192 0.868225914 154159944 FBPase Xanthobacter autotrophicus Py2 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 1.222407865 1.253368006 1.152106577 1.184400708 1.208113926 1.250685775 1.173634039 1.185675902 1.171053597 1.179384764 1.172324703 1.1873823 1.169825211 1.164427181 1.157916029 1.189074874 1.226854959 1.228969323 254465150 dehh109 Rhodobacterales bacterium Y4I Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 0.816699318 0.890188361 0.847813154 0.830453719 0.88424647 0.915625141 0.860558583 0.81653876 0.822016669 0.8872783 0.934848221 0.865665413 0.858576236 0.900189715 0.906068787 0.833965515 0.815957073 0.888187226 154251285 tfda Parvibaculum lavamentivorans DS-1 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Parvibaculum;species:Parvibaculum lavamentivorans; 1.026051319 1.009348184 0.99941016 0.99510647 0.982876805 1.000131103 0.987613834 0.976761807 1.03241646 0.937499887 0.96105179 0.980189148 0.923110392 0.91962661 0.908815224 0.968284215 0.998393036 0.976247348 183177725 linb Mycobacterium marinum M Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium marinum; 0.81922487 0.866732315 0.8545154 0.80154248 0.831907024 0.807361956 0.842241656 0.929553824 192897582 ppk uncultured bacterium Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria; 1.092177743 1.034311545 1.072950191 1.084719859 1.063147019 1.068011698 1.054332352 1.027105921 1.085747204 1.051901559 1.055423799 1.077419094 1.047774324 1.030306444 1.096041065 1.030996862 1.070883703 1.041464479 341937270 pme Xanthomonas campestris pv. raphani 756C Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas campestris; 0.857654663 0.931157391 0.915309605 0.916564749 0.910989056 0.943852203 0.873279143 0.866366142 0.867025883 0.966419339 0.918938638 0.906010256 0.925210392 0.93623874 0.847369988 0.889398129 0.878307441 0.937844023 119489994 nirk Neosartorya fischeri NRRL 181 Nitrogen Denitrification NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 0.787864944 0.779038314 71282719 ppx Prosthecochloris vibrioformis DSM 265 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeovibrioides; 0.903582563 0.853103131 0.87292649 0.916934968 0.900267735 0.934747369 0.874287458 0.844435285 0.857360432 0.851966347 0.883020108 0.8334485 0.859291958 0.919548099 0.884850255 0.848827635 0.883417941 0.889882776 118019166 pcag Serratia proteamaculans 568 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia proteamaculans; 0.946590729 0.951537541 0.92647212 0.878107526 0.953130794 0.912620267 0.853353415 0.848433824 0.906977314 0.861137129 0.885591965 0.880009368 0.934572555 0.867858677 0.928760381 0.895723487 0.955850603 0.925587594 147886208 phenol_oxidase uncultured bacterium Carbon Cycling Carbon degradation Lignin superkingdom:Bacteria; 0.80875874 0.805442081 0.816398907 0.914245116 0.792799178 0.808728415 0.811736706 0.895234656 0.853040092 0.814151558 0.815221998 0.835361124 0.847640577 0.760558398 0.843975309 365265838 amyA Actinomyces sp. oral taxon 849 str. F0330 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 849; 0.848773679 0.896264354 0.861560095 0.916146468 0.940177005 0.891472454 0.871745833 0.867784552 0.880262326 0.930318159 0.883196017 0.888243833 0.92807605 0.939502602 0.875724999 0.877808414 0.855328003 0.915574288 158316098 tfda Frankia sp. EAN1pec Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 0.858499485 0.823239193 0.897467491 0.867245104 0.883514558 0.933448395 0.8790994 0.85556653 0.887459342 0.881901183 0.877788018 0.841106611 0.846689287 0.852631935 0.905722874 0.819099904 0.880214779 0.862156744 364009462 cysJ Streptomyces sp. W007 Sulfur Reduction NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 1.188845817 1.161813054 1.184576437 1.202587295 1.159158967 1.213834484 1.177002707 1.189392306 1.182061025 1.169232533 1.184615163 1.183615445 1.142767653 1.131485462 1.110084025 1.123970038 1.196043322 1.150905251 311739833 nira Corynebacterium pseudogenitalium ATCC 33035 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium pseudogenitalium; 0.789659161 0.812128834 0.763050275 0.805224573 0.799439521 0.807277508 0.796395728 0.778359174 0.842885855 107856917 ppk uncultured bacterium Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria; 0.986617427 1.024776444 0.966290595 1.007185684 1.014050954 1.022478581 0.979019195 0.971606807 0.960051721 1.002160799 0.989065153 0.953466375 1.022254353 0.963013729 0.964686701 0.971343614 1.036433601 1.017854117 60475956 rubisco uncultured bacterium Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria; 0.948830998 0.925870386 0.932330946 0.931584796 0.845568376 0.880117515 0.836908052 0.913628344 0.939579005 0.89256074 0.840010365 0.92655789 0.84579232 0.884469914 0.823978995 0.898245833 0.944336584 0.91800414 407204385 catb Celeribacter baekdonensis B30 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Celeribacter;species:Celeribacter baekdonensis; 0.955969445 0.973636479 0.909855521 1.043812951 0.93287371 0.993341216 0.915105126 0.932844515 1.00688143 0.954087801 0.923018754 0.947568902 0.892200921 1.014828434 0.897482043 0.911776219 0.954888307 0.93034205 338171547 xylj Cupriavidus necator N-1 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 0.916850706 0.906586543 0.884719886 0.92647815 0.903498048 0.900920958 0.897683413 0.856311702 0.935443508 0.909494691 0.823101873 0.880959338 0.847202175 0.84713146 0.8134501 0.889086287 0.901119252 21220950 nirb Streptomyces coelicolor A3(2) Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 0.853659813 0.858378021 0.89183822 0.89216774 0.854782777 0.838240554 0.835064086 0.879053778 0.853124928 0.841993516 0.854454358 0.814526707 0.901805284 0.879715495 383462070 linb Saccharomonospora xinjiangensis XJ-54 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora xinjiangensis; 0.936810283 1.000354518 0.925508898 0.928349636 0.912718416 0.975119893 0.853229632 0.906664948 0.884990044 0.962238357 0.90571638 0.918771211 0.920558367 0.875063606 0.926709844 0.902715966 0.946459351 0.966027941 332340687 xylanase Cellulomonas fimi ATCC 484 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas;species:Cellulomonas fimi; 1.043003891 1.1183159 1.023391518 1.017239018 1.054570451 1.027976079 1.053697995 1.018599521 0.984368351 0.993776066 1.019540326 0.991327895 0.929975455 0.966653384 0.970349633 0.948067513 0.984218082 1.002901083 260887240 atza Selenomonas sputigena ATCC 35185 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas sputigena; 1.006273681 1.034700516 1.087749908 1.200967235 1.003284069 0.958179642 0.995499129 0.959149541 1.029440963 0.991799977 0.974508116 1.008640067 0.976031883 0.916460567 0.916390459 1.004784407 0.996992209 1.011555166 295978567 B_lactamase_A Gluconacetobacter hansenii ATCC 23769 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter hansenii; 0.888493338 0.92191585 0.97414324 0.95943196 1.000045138 1.042606254 0.997139721 0.9269156 0.944880463 1.097289426 1.146667599 1.093330438 0.995748686 0.894054077 0.848265666 0.918027301 0.875963014 0.948179102 148272582 amyA Clavibacter michiganensis subsp. michiganensis NCPPB 382 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Clavibacter;species:Clavibacter michiganensis; 1.469038429 1.440244281 1.437338186 1.437533847 1.418014076 1.472561849 1.418456831 1.436079557 1.414454691 1.426092685 1.412142991 1.436679009 1.389324695 1.402277659 1.367635087 1.411523666 1.438343607 1.414971083 378578325 arylest Pantoea stewartii subsp. stewartii DC283 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea;species:Pantoea stewartii; 1.115128085 1.115221384 1.079033065 1.117675238 1.075951706 1.100607542 1.111042956 1.105850701 1.084678905 1.116151171 1.07004808 1.107519815 1.058106174 1.058686025 1.021456376 1.047373307 1.076068658 1.064304901 227069667 nira uncultured archaeon Nitrogen Assimilatory N reduction NA superkingdom:Archaea; 0.82957807 0.892850053 0.878540625 0.843865429 0.818398326 0.803289159 0.814694514 0.844373054 0.808885226 0.84199918 0.867766689 0.858807459 356660458 chnb Rhodococcus opacus PD630 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus opacus; 1.069879183 1.040794975 1.031428232 1.059656205 1.039336242 1.031349934 1.044183501 1.048328694 1.03859095 1.010599147 1.008287531 1.025261965 1.013398889 1.030927952 1.014996153 0.997064564 1.030036745 1.031139916 78102103 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.949173264 0.912194754 0.942946106 0.964792356 0.920992061 0.906986131 0.94330671 0.921130888 0.909769542 0.897307898 0.919271627 0.961529586 0.948574503 0.895868085 0.862463753 0.882193959 0.912007803 0.928356888 325539471 endoglucanase Xanthomonas vesicatoria ATCC 35937 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas vesicatoria; 1.058810938 1.05254069 1.079949414 1.052584957 1.090776224 1.091490917 1.052296345 1.042338052 1.064024712 1.013591517 1.065217422 1.060808481 1.068776324 1.013218296 1.069561147 1.050359659 1.108653569 1.067075229 359372176 tktA Pseudomonas psychrotolerans L19 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas psychrotolerans; 1.097502113 1.061447475 1.004089628 1.105196374 0.99812985 1.053804105 1.017017146 1.052366462 1.101005836 1.060503325 1.004230544 1.078730986 1.005541267 1.039065615 1.012074279 1.003570049 1.0770434 1.073292371 337769455 cmci Streptomyces cattleya NRRL 8057 = DSM 46488 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces cattleya; 0.861206866 0.793056722 0.805929385 0.800838212 0.827791567 0.813526075 0.841148635 0.850516496 0.858121543 0.83295195 192764496 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.085842477 1.023715854 1.005705889 1.051509297 1.073195576 1.064790498 1.053676508 1.096899546 1.038052202 1.014063087 0.997730693 1.015971987 1.022326217 1.024612459 0.977386301 1.036556942 1.025953143 1.068091288 160917461 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.896761481 0.936534683 0.970752785 0.89981607 0.852506222 0.897997159 0.836683908 0.866081877 0.924482563 0.930555798 0.88432999 0.913828841 0.888823071 0.875871607 0.903413371 0.887122485 0.929703118 0.949271861 332307308 beta_agarase Glaciecola sp. 4H-3-7+YE-5 Carbon Cycling Carbon degradation Agar superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Glaciecola; 0.840768476 0.86132475 0.836472572 0.859265411 0.819858615 0.818000636 0.881730086 0.870748525 0.838181696 359248981 aoxb Mesorhizobium alhagi CCNWXJ12-2 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium alhagi; 1.018037985 0.980920643 1.013932882 1.035641407 1.042849431 1.040557635 1.045345373 1.044448079 1.043163141 1.032454233 1.038038593 1.045241578 1.047619866 0.995097216 0.977892679 0.99269232 1.037181781 0.995687609 145236879 p450aro Aspergillus niger Organic Remediation Aromatics polycyclic aromatics superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 0.889685059 0.827352461 0.936018396 0.850583529 0.894344884 0.892759457 0.839021953 0.88052718 0.877143398 0.835744558 0.927545366 0.939462383 0.837828918 0.849065547 0.879900158 0.895788216 0.931353415 0.909925383 306517710 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.833185884 0.841917796 0.803732037 0.800954264 0.807487187 0.830777035 0.825765386 0.810116515 0.822039459 260615031 chitinase Vibrio furnissii CIP 102972 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio furnissii; 1.501527741 1.468137306 1.463913331 1.470680804 1.459588582 1.505857594 1.460141813 1.485162196 1.458158745 1.454149807 1.468690255 1.467267481 1.448474764 1.449038831 1.478040763 1.484801916 1.481174573 1.455499832 113935961 nitrilase Caulobacter sp. K31 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 1.27005619 1.22850327 1.209036378 1.248452278 1.199881258 1.214296895 1.196859991 1.204435719 1.266476691 1.194234971 1.272506464 1.256955196 1.177761553 1.181738076 1.170567186 1.193688353 1.212726053 1.195253061 300866365 rubisco Oscillatoria sp. PCC 6506 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Oscillatoria; 0.900377138 1.005663179 0.945551895 0.96095442 0.965069122 0.968414733 0.962785985 0.919050994 0.900825346 0.977204711 0.969168431 0.954534813 0.946496669 0.956725678 0.925986321 0.956522633 0.957242047 0.983863598 352682321 gdh Thermoproteus tenax Kra 1 Nitrogen Ammonification NA superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Thermoproteus;species:Thermoproteus tenax; 0.814808498 0.804044103 0.826697239 0.793959203 330467519 xylg Verrucosispora maris AB-18-032 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Verrucosispora;species:Verrucosispora maris; 0.963439347 0.98470082 0.95383875 0.968824874 0.954706027 1.012940441 0.914879012 0.950022349 0.900012747 0.954283252 0.934217197 0.94624329 0.94700325 0.946832832 0.946047789 0.950133442 0.934352765 0.992984697 290956856 catechol Streptomyces scabiei 87.22 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces scabiei; 1.11344809 1.115234092 1.064584371 1.066097495 1.083156631 1.120485796 1.068996039 1.085766882 1.085894184 1.063454013 1.069438026 1.055021278 1.044902231 1.083330314 1.0691268 1.06378548 1.09144163 1.0993848 357590678 bend Corynebacterium nuruki S6-4 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium nuruki; 1.357922863 1.333435283 1.317960059 1.32906668 1.319022017 1.35809306 1.315667361 1.317725397 1.282842145 1.324347136 1.318990339 1.318953322 1.27501993 1.271715045 1.23723216 1.324679866 1.307301604 1.291605088 139478623 mer uncultured soil bacterium Metal Homeostasis Mercury Detoxification superkingdom:Bacteria; 0.943124728 0.964230855 0.879509132 0.936526976 0.851742366 0.961381194 0.832582649 0.897326327 0.89600383 0.915355686 0.867626012 0.93275838 0.863490029 0.875513496 0.844779205 0.875894532 0.958178646 0.964814565 85720801 amyA Pseudomonas fluorescens Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.946103133 0.919863375 0.831403853 0.916330505 0.900130885 0.871850952 0.87526532 0.920264494 0.907416685 0.831752305 0.871357014 0.822271003 0.834910061 0.860863345 0.932474976 0.955739681 114739978 b_lactamase Hyphomonas neptunium ATCC 15444 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Hyphomonas;species:Hyphomonas neptunium; 0.83158563 0.874742056 0.885734712 0.890446635 0.80004408 0.869318224 0.859091998 0.833216006 0.842644455 0.841704322 0.842715617 0.893547657 0.870190249 0.875861587 77454729 arsc Rhodococcus erythropolis PR4 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 1.087120482 1.057114731 1.054948083 1.09129485 1.048663397 1.09891977 1.024644339 1.108876043 1.081597982 1.079420349 1.050334772 1.057745655 1.046546508 1.013517009 1.013541167 1.074229062 1.095081391 1.060523784 109455666 dmdA Roseobacter denitrificans OCh 114 Sulfur DMSP degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter denitrificans; 1.53272615 1.49108291 1.497605427 1.500846986 1.461294978 1.49969033 1.480176211 1.522806945 1.491685118 1.462915969 1.475808972 1.505395947 1.470339436 1.438434519 1.464330619 1.495367525 1.487120238 1.44811804 343788066 pmoa NC10 bacterium enrichment culture clone 'enr c 332d Lieshout clone 18' Carbon Cycling Methane Methane oxidation superkingdom:Bacteria; 0.965397776 0.974435385 0.964328791 0.971134403 0.947730065 1.044946915 0.934662735 0.924151911 0.986843317 0.957488475 0.934187334 0.984203659 0.968327764 0.943188509 0.945078121 0.904698181 0.971503432 0.96627049 397735673 mult_ring_12DiOx Rhodococcus sp. JVH1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 1.171551564 1.136107815 1.171215714 1.21045412 1.177209037 1.156557721 1.187956386 1.173897331 1.175135955 1.132586981 1.142031314 1.164450758 1.148649962 1.092840028 1.115948229 1.123875351 1.168333687 1.119188516 336027046 mer Mesorhizobium opportunistum WSM2075 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium opportunistum; 0.823145038 0.762910139 255957055 Dyp Penicillium chrysogenum Wisconsin 54-1255 Organic Remediation halogenated compounds NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 1.06309757 1.052798448 1.02680158 1.06728759 1.004024997 1.06172591 1.014878525 0.99801788 1.016805195 1.061678183 1.064066557 1.010184672 0.983577956 1.030717479 0.956216064 1.019334741 1.038623969 1.05563653 330808946 vana Pseudomonas brassicacearum subsp. brassicacearum NFM421 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas brassicacearum; 1.023373858 1.002146377 0.994622724 1.03117123 1.017626379 0.98101764 1.031284861 1.004682526 1.006778289 0.996762017 0.956658695 1.020154325 0.941088552 0.952067528 0.903672327 0.973823981 1.023516761 0.991534794 223492294 mer Cyanobium sp. PCC 7001 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanobium; 1.25317344 1.207913164 1.194097995 1.234939504 1.185688011 1.217035292 1.179711676 1.241983148 1.227323636 1.202101453 1.182122833 1.239687888 1.178155153 1.178456707 1.183372588 1.188650261 1.251949349 1.246457304 365422184 urec Bradyrhizobium sp. STM 3843 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.946411593 0.922619866 0.930820162 0.94054363 0.962368452 0.933807306 0.938625504 1.013490531 1.017147874 0.925296482 0.933843242 0.900734881 0.90606107 0.926511342 0.837541116 0.903719389 0.953920994 0.908359391 198248027 CsoS2 Acidithiobacillus ferrooxidans ATCC 53993 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus ferrooxidans; 1.230612039 1.233575562 1.164571054 1.204314316 1.164373179 1.20981862 1.159303231 1.181342277 1.169097426 1.17896592 1.142587622 1.180475863 1.145986547 1.156747105 1.114348924 1.175026055 1.206945987 1.226661981 2960395 endochitinase Streptomyces lividans Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 1.160536464 1.158550067 1.12733373 1.135764652 1.128612927 1.161417131 1.148816323 1.134885839 1.132634142 1.164336185 1.129167387 1.153930959 1.126295274 1.140848804 1.127667181 1.149795019 1.132715354 1.147090496 116098698 ppx Lactobacillus brevis ATCC 367 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus brevis; 0.909863956 0.881516604 0.915246699 0.810272806 0.835343097 0.874686806 0.890852945 0.852844737 0.888088139 162568543 aoxb uncultured bacterium Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 0.759996898 0.793937253 0.78540641 0.844447111 0.758164862 0.801132032 0.872078238 0.80195135 223585858 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.965982612 0.948122654 0.938413615 1.008094453 0.955849109 0.968763077 0.89588498 0.957202057 0.993691926 0.902902747 0.872207996 0.920289535 0.911270362 0.929142338 0.832374617 0.891804336 0.997833898 0.97375602 378819728 xyla Nocardia brasiliensis ATCC 700358 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia brasiliensis; 0.826136337 0.823540168 0.865038572 0.883111357 0.825024111 0.843039018 0.84801704 0.82549071 0.81957498 1.031156885 0.84069793 303310537 phospholipase_D_fungi Coccidioides posadasii C735 delta SOWgp Carbon Cycling Carbon degradation Phospholipids superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;genus:Coccidioides;species:Coccidioides posadasii; 0.920396178 0.900384319 0.929984213 0.924320452 0.925466637 0.830565379 0.859317777 0.896860635 0.95174192 0.919446432 1.025782163 0.954042908 0.919857647 0.858184289 0.899825736 0.891452065 0.893359174 0.876691176 81176587 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.043174842 1.054538498 1.032417039 1.048409958 1.054865799 1.049279579 1.016556963 1.011386137 1.040573241 1.033191633 1.016279622 1.043953469 1.004694697 1.01579347 0.986344181 1.016616354 1.119130271 1.069810072 397162916 nfsb_2 Enterobacter radicincitans DSM 16656 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Kosakonia;species:Kosakonia radicincitans; 0.991034754 1.018647349 0.999270082 1.04368373 0.961776758 0.993043493 0.964948 0.990903618 1.013566527 0.974676069 0.949648033 0.992821552 0.939893015 0.942735585 0.945244692 0.947842284 1.049095365 1.005788229 160917476 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.198520647 1.196676057 1.170619453 1.192869371 1.143522906 1.20221186 1.147240402 1.15670759 1.175753743 1.173813759 1.161131013 1.184657794 1.136842117 1.149715978 1.134531873 1.187966902 1.180668585 1.184909358 46519963 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.869033601 0.855194209 0.879013478 0.855425837 0.821626175 0.835213355 0.849060583 0.836387271 0.801235945 0.840678438 0.812442809 0.817815691 0.848802253 359419966 gdh Gordonia araii NBRC 100433 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia araii; 0.873347011 0.855592471 0.885170348 0.848910564 0.87688428 0.879923963 0.88095159 0.857090177 0.801050335 0.90006343 0.826953805 0.821668444 0.880693241 0.89658618 169615238 phospholipase_D_fungi Phaeosphaeria nodorum SN15 Carbon Cycling Carbon degradation Phospholipids superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Phaeosphaeriaceae;genus:Phaeosphaeria;species:Phaeosphaeria nodorum; 0.87727567 0.918485793 0.812154981 0.874908961 0.837864178 0.874253869 0.869219734 0.853979586 0.839209041 0.893613625 0.891721332 0.898629449 338750971 FBPase Acetobacter tropicalis NBRC 101654 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acetobacter;species:Acetobacter tropicalis; 0.859778128 0.898395186 0.881008832 0.874958401 0.875517149 0.857312762 0.887743586 0.870254328 0.881563238 0.878223532 0.967790726 0.875221182 0.797839084 0.820814232 0.899936963 0.948586661 0.964304835 94471123 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.952593981 1.01260797 0.97172112 0.966724438 0.856510656 0.964973772 0.863019478 0.9144574 0.932473331 0.98232699 0.979493952 0.931139734 0.852559267 0.914637996 0.852577667 0.872682897 0.975319062 1.000217709 229610707 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.311375473 1.251964687 1.237376455 1.300860871 1.228317244 1.302275396 1.220553505 1.215095505 1.215881789 1.240306285 1.234433006 1.236967023 1.202320984 1.236801239 1.224742929 1.239928068 1.310828432 1.249192472 374983150 chne Streptomyces bingchenggensis BCW-1 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces bingchenggensis; 0.858916553 0.940754852 0.899066469 0.927340733 0.903927417 0.91252934 0.825592504 0.826636776 0.889817074 0.865098286 0.861165678 0.852583559 0.870614441 0.827635195 0.827763579 0.892402115 0.934120837 0.943418131 358636016 tktA Azoarcus sp. KH32C Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 1.316048858 1.262313022 1.294027857 1.289708608 1.287454714 1.333368091 1.284341208 1.321249961 1.27426117 1.283759493 1.280286324 1.267207127 1.280718345 1.241678561 1.251177907 1.265857016 1.316204599 1.295398077 68489569 phospholipase_B_fungi Candida albicans SC5314 virulence degradation NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;genus:Candida;species:Candida albicans; 1.189133678 1.163243193 1.154256778 1.167723893 1.185626217 1.158087601 1.17073247 1.171854846 1.146265309 1.14866647 1.181661965 1.18397567 1.134635124 1.087500598 1.066942616 1.101891697 1.16519495 1.123241511 340346640 pme Prevotella dentalis DSM 3688 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella dentalis; 0.828701638 0.797318875 0.841965479 0.817241763 377525149 alkb Gordonia otitidis NBRC 100426 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia otitidis; 0.852181105 0.873366023 0.826701844 0.846562083 0.798681015 0.829486408 0.819593196 0.821721802 0.874965595 0.814706498 0.827399315 0.855295848 0.891133314 15787969 dsra Desulforhabdus amnigena Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophobacteraceae;genus:Desulforhabdus; 0.849025239 0.806925932 0.823605551 0.818408064 0.792784717 161163802 chnb Sorangium cellulosum 'So ce 56' Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 1.66913519 1.619313144 1.630570836 1.620036358 1.608621975 1.647802199 1.604168643 1.632925054 1.61286006 1.593112071 1.61650628 1.617855308 1.583502759 1.543631291 1.587974093 1.603498451 1.631523422 1.583261502 163742759 GAPDH_Calvin Phaeobacter gallaeciensis 2.10 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 0.879998035 0.942212232 1.24040247 0.941311764 0.898879379 0.960483798 0.926527998 1.01123654 0.937004252 0.96505493 0.931369241 0.901302942 0.930012583 0.924168814 0.898128816 0.858632681 0.996495168 0.875883292 161382408 mer Oceanibulbus indolifex HEL-45 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanibulbus;species:Oceanibulbus indolifex; 1.218532601 1.197594511 1.208176714 1.190732158 1.169812015 1.183216993 1.16193928 1.177868422 1.18446002 1.181485792 1.166561953 1.189810856 1.172719464 1.178831027 1.165483901 1.172048982 1.224329464 1.200233273 160882537 xylanase Bacteroides ovatus ATCC 8483 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides ovatus; 0.840977048 0.853287036 0.820310903 0.893410032 0.834507729 0.80362858 0.960948932 0.852677414 0.910161637 0.861023093 0.825292217 0.859895515 289416916 amyA Mycobacterium tuberculosis T46 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tuberculosis; 1.03907024 1.187042049 1.192444416 1.065200835 1.037411103 1.132404024 1.049046175 1.084104115 1.043549828 1.031620402 1.067040734 1.065054666 1.004694445 1.04147197 1.023495188 1.035650691 1.077205641 1.060625697 118431262 AACT_DiC4HB Aeropyrum pernix K1 Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Desulfurococcales;family:Desulfurococcaceae;genus:Aeropyrum;species:Aeropyrum pernix; 1.059784064 1.042811245 1.050111412 1.103486928 1.0575245 1.068412805 1.076308338 1.108513734 1.074207933 1.057861569 1.040127188 1.096981549 1.035861404 1.02204269 1.055982603 1.021524918 1.032346669 1.01595054 118470941 cutinase Mycobacterium smegmatis str. MC2 155 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 0.884335614 0.917772181 0.85868455 0.889305761 0.835520062 0.86147103 0.879320995 0.866976785 0.862114909 0.833877768 0.815748284 0.84093989 0.827903559 0.896084937 0.929506089 15597770 alkb Pseudomonas aeruginosa PAO1 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 0.962529341 0.881964574 0.862244425 0.865152413 0.830412631 260645698 mannanase Streptomyces scabiei 87.22 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces scabiei; 1.23725117 1.249158115 1.258327979 1.262678747 1.241925181 1.262624092 1.25255559 1.24821567 1.238783689 1.27008488 1.255174822 1.289290334 1.211319228 1.230204229 1.217757228 1.235408283 1.221020385 1.220969811 89512372 nifh uncultured nitrogen-fixing bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 1.330061256 1.323716636 1.313096313 1.323653358 1.292016454 1.334710859 1.309877831 1.328288545 1.320082242 1.320402737 1.282698453 1.322249432 1.276666922 1.27975277 1.264836906 1.304705002 1.315215392 1.280588887 268313375 glucoamylase Thermomonospora curvata DSM 43183 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Thermomonosporaceae;genus:Thermomonospora;species:Thermomonospora curvata; 1.381925773 1.351224104 1.34259504 1.338717438 1.307897863 1.383878164 1.310407296 1.326791214 1.317324064 1.32398004 1.317566367 1.303337668 1.317719668 1.320536201 1.290005588 1.32220107 1.348514021 1.33147586 339282943 mnp Polyporus brumalis Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Polyporaceae;genus:Polyporus; 0.884925238 0.866179529 0.841528435 0.933071552 0.862782035 0.843381031 0.884741991 0.905681266 0.877891473 0.819488562 0.87037121 0.811401811 0.881591963 0.857886783 0.899780071 0.910658255 198264086 arsc Octadecabacter antarcticus 238 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 0.932659329 0.874772803 0.876457727 0.846650121 0.823820728 0.907956203 0.816019515 0.817025075 0.889090425 0.910895401 0.86913888 0.843637315 0.790883187 0.885810024 0.793849221 0.847389246 0.819393258 0.847547553 219847326 aoxb Chloroflexus aggregans DSM 9485 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aggregans; 1.043629333 1.026841044 1.032625616 1.067599598 1.082966624 1.020511746 1.003941692 0.980051977 1.041597644 1.051852022 1.081385751 1.061989362 1.05730013 1.075614342 1.035634803 1.01134589 1.075205428 1.000892162 336012979 xylanase Lachnospiraceae bacterium 3_1_57FAA_CT1 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae; 0.79295546 0.843393151 0.830579458 0.843382239 0.873614339 0.87607385 0.822577926 0.810422193 0.873060211 0.931105098 0.859840751 0.810321732 0.852987055 0.842978025 0.836897957 0.803790068 0.852368583 332683367 amyA Capnocytophaga sp. oral taxon 329 str. F0087 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Capnocytophaga;species:Capnocytophaga sp. oral taxon 329; 0.968633672 0.986223098 0.852135124 0.908083196 0.926448969 0.914438632 0.866649858 0.863950473 0.936278012 0.85605794 0.856711759 0.834886343 0.860520966 0.924139495 1.038091593 194345721 amyA Streptomyces sp. Mg1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 1.187911885 1.162042215 1.160755671 1.15797757 1.100425611 1.167926457 1.11594764 1.144038962 1.151676645 1.14286872 1.119705641 1.139100057 1.118023889 1.114016466 1.083025132 1.137467142 1.167128558 1.153407643 34105546 endochitinase Chromobacterium violaceum ATCC 12472 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Chromobacterium;species:Chromobacterium violaceum; 0.859422543 0.808126441 0.778102681 0.828193968 345298413 pme Enterobacter asburiae LF7a Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter asburiae; 0.872583648 0.962266993 0.859733577 0.905294994 0.916741752 0.92037375 0.926359084 0.865212441 0.851867632 0.878684518 0.808365216 0.949113295 0.941690697 0.909456106 0.855362764 0.910938054 0.862714168 0.984136021 226944828 cysI Azotobacter vinelandii DJ Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Azotobacter;species:Azotobacter vinelandii; 0.777252732 0.831638987 323356589 endoglucanase Microbacterium testaceum StLB037 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Microbacterium;species:Microbacterium testaceum; 0.818157205 0.841093163 0.869031408 0.858339518 0.818992975 0.889732369 0.899783723 0.848348347 0.810988152 0.818460062 0.848582548 251773406 mdh Leptospirillum ferrodiazotrophum Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle superkingdom:Bacteria;phylum:Nitrospirae;class:Nitrospira;order:Nitrospirales;family:Nitrospiraceae;genus:Leptospirillum; 0.940263911 0.931913809 0.93082001 0.976131955 0.934957199 0.907188062 0.997157941 0.979818003 0.947887333 0.947764249 0.950775941 0.931113098 0.914315081 0.893279881 0.947457183 0.876412434 0.942298603 0.957188619 260644352 hcaacd Streptomyces scabiei 87.22 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces scabiei; 1.122608437 1.120921576 1.093391824 1.068699683 1.021758407 1.093956298 1.046891065 1.033625777 1.114144905 1.031832836 1.021598856 1.05106196 0.99583139 1.024679807 1.043883209 1.015162968 1.068602918 1.077774056 290471427 amyA Meiothermus ruber DSM 1279 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Meiothermus;species:Meiothermus ruber; 1.121832214 1.065889937 1.082530524 1.060449581 1.084970609 1.146163178 1.110585065 1.087999954 1.094036599 1.106105052 1.086411511 1.071498546 1.078191473 1.089819435 1.084916408 1.067156051 1.158448839 1.075290385 2897667 nifh Paenibacillus macerans Nitrogen Nitrogen fixation NA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 1.24373809 1.225590867 1.243985095 1.242978317 1.240231746 1.228827831 1.222385113 1.259552328 1.221555717 1.227645993 1.238308029 1.251983916 1.216612513 1.206328567 1.270745904 1.227160823 1.212690453 1.228391235 209978146 phospholipase_A2_fungi Sporothrix schenckii Carbon Cycling Carbon degradation Phospholipids superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Ophiostomatales;family:Ophiostomataceae;genus:Sporothrix; 1.157249401 1.22049329 1.143811635 1.208444162 1.204971767 1.16603046 1.182684279 1.14103926 1.178644221 1.147434216 1.158282362 1.206263569 1.132872694 1.104388705 1.06435733 1.12226845 1.196465655 325951852 urec Nocardioidaceae bacterium Broad-1 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae; 1.231772307 1.197514128 1.193627742 1.225096451 1.197344418 1.199286942 1.200092287 1.191446906 1.207982573 1.209779395 1.198863344 1.237963226 1.170383182 1.134213864 1.144449637 1.174855412 1.247234968 1.195072546 9501763 alginase Sphingomonas sp. Carbon Cycling Carbon degradation Alginate superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 0.763986549 0.826213426 0.827366981 0.838440994 0.804701259 0.968146318 0.812762556 0.820155135 0.798951184 0.83376316 0.796636437 0.835356601 169155080 ara Clavibacter michiganensis subsp. sepedonicus Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Clavibacter;species:Clavibacter michiganensis; 1.129167731 1.148843847 1.129386456 1.09479686 1.129628875 1.13760589 1.093192325 1.091350988 1.089541572 1.117259696 1.108589503 1.155218314 1.103840763 1.09833026 1.164244711 1.111442031 1.130503545 1.101798819 242277959 CsoS1_CcmK Desulfovibrio salexigens DSM 2638 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio salexigens; 1.276214946 1.225263701 1.21053954 1.217815207 1.243660275 1.205032081 1.20115201 1.194721007 1.210389328 1.204815963 1.185940391 1.219131653 1.218901201 1.205112932 1.171124751 1.187944215 1.220367962 1.239218453 227069433 narb uncultured archaeon Nitrogen Assimilatory N reduction NA superkingdom:Archaea; 0.994532281 1.0580851 0.931797948 0.954806652 0.969470846 0.934814643 0.924257329 0.920250672 0.971918831 0.929253577 0.942324306 0.968576163 0.890326314 0.904634793 0.888647109 0.867100127 0.887189861 0.915472493 324099244 terc Pseudomonas sp. TJI-51 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.988529797 0.970815704 0.983334003 0.999325001 0.991110037 0.991204911 0.985463718 1.006403423 0.99701678 0.977323134 1.007405977 1.001306042 0.990602875 0.982636344 0.975801051 0.962275529 1.068612385 0.997728222 37726828 dsra uncultured prokaryote Sulfur sulfite reduction NA 0.841001581 0.840314891 0.794950279 0.807947158 0.829236579 394766297 nfsa_2 Actinomyces massiliensis F0489 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces massiliensis; 0.891166583 0.849833523 0.858628434 0.880623725 0.858845326 0.881529459 0.842162593 0.837687695 0.863835832 0.817417823 0.834396297 0.806260612 0.905520907 0.909256481 422314235 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.849387783 0.818467826 0.90193346 0.96789813 0.793936626 0.861404205 0.966658829 0.923102378 0.900776618 0.960499405 0.864722443 0.94160222 0.860042895 0.842761596 0.833638227 0.890143829 0.949869954 0.944665528 178925571 narb uncultured bacterium Nitrogen Assimilatory N reduction NA superkingdom:Bacteria; 1.161674681 1.147854725 1.161801248 1.138768695 1.144869496 1.145184804 1.135841748 1.112220616 1.13829531 1.130128347 1.131606776 1.107545514 1.086780863 1.070133971 1.087003956 1.082520649 1.156895877 1.162058371 321164198 amyA Granulicella tundricola MP5ACTX9 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Granulicella;species:Granulicella tundricola; 0.854089109 0.805069706 0.824161936 0.827256769 109452488 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.90009629 0.848640589 0.823563954 0.886735498 0.804537259 0.835124575 0.889746403 0.9006552 0.879028946 0.833181424 0.854927243 0.859565769 377660410 rubisco Thiorhodovibrio sp. 970 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiorhodovibrio; 1.080990864 1.057730195 1.209395771 1.097342953 1.068382917 1.055475609 1.072927562 1.046793333 1.073700888 1.035983096 1.063937631 1.079252047 1.019906172 1.009381931 1.033945481 1.035935986 1.078620345 1.04591386 340361550 linc Neisseria macacae ATCC 33926 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria macacae; 0.794224828 0.831280644 0.80172888 0.786064496 0.811899267 0.839926275 0.781940189 0.844338812 1183904 APS_AprB Desulfovibrio vulgaris Sulfur adenylylsulfate reductase NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio vulgaris; 0.851921787 0.884717058 0.854771262 0.817340868 0.856704878 0.948086368 170749958 FBPase Methylobacterium radiotolerans JCM 2831 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium radiotolerans; 0.897694472 0.92866127 0.945671355 0.94770917 0.970595132 0.939282146 0.990790991 0.954861046 0.937775473 0.967814 0.955957251 0.972772273 0.925800228 0.902032132 0.924710095 0.910986421 0.972678572 0.985660246 161019212 bphc Dyella ginsengisoli Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Dyella; 0.836734989 0.892134533 0.850538668 0.853741412 0.807007795 0.835344241 0.859233638 0.847823081 377555695 PRI endosymbiont of Bathymodiolus sp. Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 0.968694731 0.970520602 0.932812943 1.000549132 1.045129145 1.01021507 0.847151848 0.930576105 1.075614248 0.996250437 0.95482381 0.949473116 1.120248689 0.954246811 0.918377412 0.873419743 0.898367722 310829862 ppx Eubacterium limosum KIST612 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Eubacteriaceae;genus:Eubacterium;species:Eubacterium limosum; 0.855593178 0.790850315 0.856954119 0.803188317 0.873857228 0.823917352 0.884881382 0.833388932 0.81003224 0.827503554 0.846811998 0.799830935 0.890219457 0.913565832 0.920570881 30269591 nasa uncultured bacterium Nitrogen Assimilatory N reduction NA superkingdom:Bacteria; 1.014011975 1.016201034 1.001984543 0.992505491 0.947975087 1.001002492 0.94136987 1.024510759 0.999886884 1.016483682 0.982969552 0.990792254 0.947752887 0.951495408 0.889573226 0.941342272 0.996612344 0.995812749 169793396 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.823585719 0.781014465 366086423 amyA Lactobacillus zeae KCTC 3804 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus zeae; 1.044639557 1.055067918 1.05640929 1.030638975 0.993713741 1.064096831 1.004126817 1.028205734 1.04214905 1.07857134 1.022346276 1.05452291 1.012394802 1.027564036 0.97639339 1.013303595 1.068093467 1.05431641 288911209 aln Azospirillum sp. B510 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum lipoferum; 1.019035697 1.038646014 0.960818301 1.03580983 0.996300382 0.980369326 1.019025775 1.065873695 1.044363028 1.013046725 1.029530092 1.039032712 1.016868422 0.9604028 0.95602124 0.957802046 1.003744189 1.027512016 219858153 pme Arthrobacter chlorophenolicus A6 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 1.036015678 1.008131671 1.039447524 1.009080807 0.998108459 0.992572902 1.012786793 1.011747959 1.001751264 0.9676772 1.013533036 0.984915317 0.987545254 0.914383825 1.0390813 1.033406328 284031806 arsc Kribbella flavida DSM 17836 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Kribbella;species:Kribbella flavida; 1.126690395 1.089922885 1.133772038 1.092419297 1.082234023 1.120254847 1.070567435 1.07814568 1.095409122 1.085825945 1.091398071 1.111151864 1.067115482 1.063861519 1.101764239 1.095302446 1.11076838 1.111451408 402251184 catechol Burkholderia cepacia GG4 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cepacia; 1.122488809 1.049124956 1.103904945 1.031918126 0.998719737 1.021298646 0.957426117 1.016924955 1.052430252 1.031400529 1.028097588 1.129358834 1.008295171 1.041354582 1.033253289 1.045943816 1.084425992 1.047532259 94470923 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 1.079680821 1.049030541 1.031291014 1.024418949 1.063013103 1.05536388 1.024192661 1.013136604 1.009238419 1.035365859 1.065103921 1.045183412 1.030797541 1.026507202 1.036190838 1.04140695 1.037178772 0.999950529 73541847 ppx Ralstonia eutropha JMP134 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 1.093161183 1.033920493 1.043495557 1.068195691 1.058486795 1.055331221 1.048658739 0.946283456 1.059455909 0.939756817 0.977652043 1.01801465 0.947939033 0.99400587 0.949134147 0.960725473 1.05824407 1.080918781 374984465 pme Streptomyces bingchenggensis BCW-1 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces bingchenggensis; 0.876652377 0.959513019 0.907413874 0.918220922 0.967737219 0.872492261 0.880992339 0.87623584 0.901422679 0.901858533 0.91728508 0.872063273 0.859007389 0.887126099 0.929669556 0.885635777 0.927941162 9106794 linc Xylella fastidiosa 9a5c Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xylella;species:Xylella fastidiosa; 1.36308452 1.259699867 1.298779099 1.311838645 1.281752943 1.309285521 1.069679506 1.221442831 1.307653351 1.302044616 1.296061481 1.298336682 1.276893675 1.291770204 1.195101074 1.238577996 1.324455725 1.298487546 383785064 APS_AprB Leptospirillum ferrooxidans C2-3 Sulfur adenylylsulfate reductase NA superkingdom:Bacteria;phylum:Nitrospirae;class:Nitrospira;order:Nitrospirales;family:Nitrospiraceae;genus:Leptospirillum;species:Leptospirillum ferrooxidans; 0.946334893 0.921277 0.916657276 0.959829694 0.945122648 0.875556384 0.913197986 0.915424479 0.932501734 0.936353951 0.920509224 0.947121739 1.028386862 0.853012912 0.889688821 0.875001804 0.924514691 0.88387153 29608437 linb Streptomyces avermitilis MA-4680 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 0.900132185 0.857948863 0.888337541 0.88714285 0.857406144 0.829356468 0.819946334 0.863988174 0.861933351 0.82587627 0.874014527 0.865432972 0.867556485 0.860544401 0.93024592 0.889112029 119371714 narg Thauera aromatica Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Thauera; 1.09831556 1.067329419 1.034338667 1.086391611 1.025009892 1.093245467 1.073403929 1.080630157 1.079771596 1.089020782 1.061931935 1.076285134 1.023174593 1.022979497 0.989553909 1.038897517 1.082076952 1.062634111 346226444 ara Anaerophaga thermohalophila DSM 12881 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Marinilabiliaceae;genus:Anaerophaga;species:Anaerophaga thermohalophila; 0.861407635 0.879042586 0.825448751 0.857276845 0.840223539 0.83612877 0.848315212 0.840641733 0.866780189 0.82463292 0.822120973 0.864540778 0.858922545 0.901088537 600093 napa Paracoccus denitrificans Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus; 1.201991237 1.205880856 1.167302861 1.165733062 1.138290525 1.208454988 1.131953297 1.152936639 1.164819564 1.178880212 1.165934302 1.180286945 1.129336762 1.133120667 1.135878707 1.110959308 1.196042671 1.188234972 386396591 arsc Bradyrhizobium sp. WSM1253 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.75836642 0.796705104 74038466 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.907629047 0.921038482 0.914196763 0.925830368 0.919405151 0.961224017 0.903241036 0.890123811 0.898635902 0.927310582 0.91600044 0.919077928 0.904194627 0.899690096 0.880129555 0.919465207 0.913385334 0.933177186 343502263 FBPase Vibrio tubiashii ATCC 19109 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio tubiashii; 0.863819762 0.86555425 0.902822768 0.832218454 0.877292609 0.842325738 0.845484952 0.872586104 0.852587872 0.880792839 0.855796561 379003708 PEP_synthase Pyrobaculum oguniense TE7 Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum oguniense; 0.876725463 0.854257822 0.850797022 0.917010107 0.825113745 0.853101049 0.869170836 0.831631046 0.847359169 0.82456554 0.885825881 0.871193095 223585862 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.844509616 0.917849773 0.848318124 0.780216357 0.874163664 0.82704957 0.914001417 251797192 hyaluronidase Paenibacillus sp. JDR-2 Carbon Cycling Carbon degradation hyaluronic acid superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 0.827377522 0.893911323 0.809784036 0.792194125 0.789143519 0.831501363 0.855733136 0.850605633 0.78196472 0.824928951 0.806868206 0.85057674 0.825982056 384040853 aoxb uncultured bacterium Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 1.305334177 1.290465436 1.276756221 1.29369991 1.307399578 1.273969564 1.265779375 1.277677639 1.283834 1.258855809 1.303111881 1.298967677 1.290612584 1.230371255 1.255202184 1.249852991 1.307724603 1.239412754 347304858 terc Pseudomonas aeruginosa M18 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 0.769803692 0.822914508 89951792 alginase Saccharophagus degradans 2-40 Carbon Cycling Carbon degradation Alginate superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Saccharophagus;species:Saccharophagus degradans; 0.83789341 0.807904787 148260224 GAPDH_Calvin Acidiphilium cryptum JF-5 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acidiphilium;species:Acidiphilium cryptum; 0.991809498 0.965089845 0.865464624 0.977165708 0.832613932 0.897239415 0.906177202 0.959022143 0.966690667 0.908701283 0.860618955 0.942281355 0.864020511 0.851114449 0.823604739 0.899920507 0.951235731 1.001849464 186472614 phn Burkholderia phymatum STM815 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 1.017073679 0.996038948 0.985207049 0.990014123 0.963856721 0.988806334 0.938134281 0.936438599 0.967548636 0.948501854 0.97042879 0.973738338 0.958109019 0.926767264 0.925232124 0.93815782 1.002018027 1.003237538 151939785 endochitinase Vibrio sp. Ex25 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 0.914328075 0.855843809 0.830564535 0.820287049 0.813036649 0.848149378 0.852327056 0.825107661 0.865053551 0.829793752 0.849750184 374569385 amyA Alishewanella jeotgali KCTC 22429 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alishewanella;species:Alishewanella jeotgali; 0.95288128 0.88079926 0.879121389 0.972103013 0.828494483 0.865363087 0.836817652 0.853942452 1.02344016 0.876695 0.820622351 0.997700023 0.843124758 0.856302895 0.894723102 0.890396915 223939151 amyA bacterium Ellin514 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobia subdivision 3;genus:Pedosphaera;species:Pedosphaera parvula; 0.887895382 0.869568782 0.903291364 0.934600507 0.875109005 0.901302004 0.942485428 0.892866096 0.91335126 0.907439805 0.92088046 0.892358248 0.875110173 0.799865968 0.824183499 0.865435052 0.877341251 18034223 aps_apra Desulfofrigus oceanense Sulfur adenylylsulfate reductase NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfofrigus; 0.819573447 0.856891635 108743469 urec Streptomyces kanamyceticus Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 1.27208405 1.28172612 1.257166891 1.259585905 1.242938834 1.285234959 1.247627772 1.239055931 1.251460645 1.24655408 1.250234543 1.255354296 1.221828312 1.201415017 1.202725677 1.241569128 1.255755891 1.255118623 84694682 ppx Polaromonas naphthalenivorans CJ2 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 1.326833653 1.328026422 1.299025191 1.283911365 1.289512506 1.363415293 1.281078663 1.293820719 1.28292528 1.314141093 1.300346484 1.304374984 1.281929373 1.302513724 1.29502291 1.314980339 1.30985123 1.311165335 217330167 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.974557821 0.938003145 0.920213688 0.948921605 0.920492239 0.941879472 0.935296762 0.930287198 0.980928878 0.95237873 0.964069912 0.949030957 0.914414289 0.891191266 0.87728069 0.906372692 0.972640092 0.983676164 42475466 bphc Rhodococcus rhodochrous Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 1.249033503 1.248146941 1.213733699 1.242057773 1.194927883 1.225723009 1.163024329 1.197528434 1.207195364 1.200690874 1.202509914 1.219214049 1.18440744 1.176454831 1.173780678 1.212381308 1.258046675 1.218311164 225042798 atza Clostridium asparagiforme DSM 15981 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium asparagiforme; 0.8475311 0.810990304 0.825327461 0.817565095 404442422 scnabc Mycobacterium vaccae ATCC 25954 Organic Remediation Others NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vaccae; 0.852677611 0.861768943 110819504 mdlc Rhodococcus sp. RHA1 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 1.039388805 1.015366735 1.048991151 1.057732827 1.050728868 1.056814355 1.020949864 1.063688416 1.056768988 1.029629819 1.058419941 1.044878564 1.040106536 1.002664109 0.969116843 0.991605596 1.055081086 1.006351524 224950574 fthfs Clostridium methylpentosum DSM 5476 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium methylpentosum; 0.810459048 0.859397657 0.902795556 0.903539574 0.85875702 0.871322547 0.872960565 0.89707722 0.912551953 0.816083854 0.910260892 0.849961144 0.870582606 0.849513566 0.923082468 0.889075825 0.895506539 0.85644052 221721940 endoglucanase Agrobacterium radiobacter K84 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 0.903091586 0.809780756 0.841568777 0.961274823 0.809665572 0.845593914 0.851541723 0.902276783 0.809814186 0.850992752 0.827269642 0.914052387 0.851877749 111073795 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 1.221073213 1.199803167 1.174868168 1.203074057 1.182228579 1.197050609 1.149693486 1.160058118 1.203707083 1.223881091 1.170926707 1.178443614 1.143176643 1.139824275 1.164616809 1.147244876 1.22427347 1.226027717 121556154 tpha Verminephrobacter eiseniae EF01-2 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 0.809608889 0.846176939 0.952804746 0.834803393 0.873756889 0.942030932 0.844923675 0.809855194 0.830741744 0.886697194 0.909130552 0.834767444 0.91782198 0.887346991 0.833462613 0.823779037 0.840907545 0.889251798 296448049 PRK Methylosinus trichosporium OB3b Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylocystaceae;genus:Methylosinus;species:Methylosinus trichosporium; 0.917907841 0.913727349 0.890780563 0.914926179 0.858944105 0.918306854 0.862255652 0.925330823 0.915738152 0.927334538 0.825623762 0.913008144 0.796906837 0.912538039 0.861446508 0.825312729 0.945956201 0.950380132 386328931 chitinase Serratia sp. AS13 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia; 1.077434637 1.077449593 0.98378482 1.06482185 1.124066479 1.111222085 1.090731512 0.917801979 0.926219316 1.108728074 1.019189169 1.040503866 1.049702485 1.133730286 0.970835275 1.020176224 1.010405307 1.077596652 74058115 terc Thiobacillus denitrificans ATCC 25259 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus;species:Thiobacillus denitrificans; 0.782855076 0.80088754 0.8409207 0.785812016 0.800718408 0.835958917 0.80882405 0.840802113 0.847095102 269796019 amyA Sanguibacter keddieii DSM 10542 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Sanguibacteraceae;genus:Sanguibacter;species:Sanguibacter keddieii; 0.950628466 0.952110407 0.943874791 0.932125402 0.949000257 1.030608269 0.976730679 0.943881778 0.900032171 0.99012305 0.933653065 0.933323211 0.893686358 0.960065678 0.963444802 0.95434227 0.948457204 1.002294203 398860674 pcpe Pseudomonas sp. GM79 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.780634629 0.883743029 0.814049579 0.823736752 0.878211237 0.81175326 0.764061108 0.8282185 0.817356157 0.813266746 0.888862845 119714930 one_ring_23diox Nocardioides sp. JS614 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 1.188472628 1.16230113 1.148193118 1.153029949 1.124584509 1.182355359 1.101755494 1.134586474 1.156587973 1.136614736 1.111598993 1.131906551 1.123175696 1.122861141 1.109071302 1.118955754 1.174947365 1.173499995 20278795 nifh uncultured nitrogen-fixing bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.82515547 0.888456638 0.851391528 0.892747832 0.879738193 0.878623967 0.851797404 0.898696908 0.866359081 0.880113848 0.822023346 0.885649891 0.866684835 0.866006703 0.867489339 0.858117125 0.832147244 0.915707906 84778291 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.87973967 0.874036818 0.902590225 0.823326608 0.796166233 0.800047049 0.845742125 0.884623228 0.879006836 0.857855679 0.87613078 0.930639443 290570037 alginase Stackebrandtia nassauensis DSM 44728 Carbon Cycling Carbon degradation Alginate superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Glycomycetaceae;genus:Stackebrandtia;species:Stackebrandtia nassauensis; 0.869967272 0.889094012 0.844618286 0.904997293 0.809969438 0.839230545 0.878583636 0.933824081 0.90839396 0.869173175 0.817399297 0.882644677 0.858308873 0.82688875 0.85214852 0.824243736 0.855876301 56677341 GAPDH_Calvin Ruegeria pomeroyi DSS-3 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 1.323586395 1.319113438 1.304341357 1.311887052 1.296200615 1.34215797 1.294314524 1.283954543 1.293564378 1.299290266 1.302929084 1.28706523 1.267151736 1.267956952 1.287176973 1.278112063 1.316471933 1.299692497 84502240 GAPDH_Calvin Oceanicola batsensis HTCC2597 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola batsensis; 1.194187344 1.189758341 1.217150044 1.181419834 1.173649776 1.21847819 1.143977619 1.177990231 1.39007639 1.184649229 1.155206724 1.173357429 1.181085996 1.168565076 1.204611282 1.172221865 1.20730312 1.216788742 870833 xylanase Emericella nidulans Carbon Cycling Carbon degradation Hemicellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella; 0.962427351 0.971116942 0.950792566 0.956872034 0.929086122 0.952307465 0.898557589 0.904966861 0.921931521 0.937986737 0.937035516 0.957037326 0.936681576 0.936999524 0.939724756 0.954454954 0.959301981 0.944735496 301062282 codh delta proteobacterium NaphS2 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 0.968965846 0.910157821 0.878147302 0.885818148 0.897264608 0.910277139 0.878798652 0.879392474 0.917591397 0.889337578 0.86335649 0.893550116 0.89763123 0.916375848 0.872311455 0.885109407 0.923784153 0.906697218 311032157 CsoS1_CcmK Bacillus sp. m3-13 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 1.202344721 1.2070247 1.154948696 1.173085739 1.173539769 1.144183473 1.165489751 1.164516521 1.276762218 1.144896563 1.150515188 1.180915223 1.141310505 1.123807178 1.197471991 1.195126892 1.161068946 1.163032232 55978100 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.104904351 1.108372909 1.02562878 1.083068796 1.027914551 1.084120833 1.048827267 1.065196132 1.071281958 1.061535865 1.06560011 1.073163748 0.981416881 0.976714731 0.960611706 1.002086025 1.060849403 1.049165291 183982989 mhpa Mycobacterium marinum M Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium marinum; 0.850008475 0.885459871 0.87216469 0.874735401 0.860491613 0.900317985 0.881831855 0.902346817 0.827125717 0.895113067 0.841399032 0.872118711 0.800030382 0.876812074 0.925235584 2960348 amyA Streptomyces sp. Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 0.886382878 0.920249104 0.868149898 0.862646843 0.887193506 0.827262181 0.884024503 0.875287697 0.910696745 0.880865957 0.820818023 0.825571814 0.884319543 0.852197551 0.830485276 0.909649839 0.947431344 83643155 pula Hahella chejuensis KCTC 2396 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Hahellaceae;genus:Hahella;species:Hahella chejuensis; 0.881216533 0.791177331 0.865146521 0.898559641 0.870957143 0.842874369 0.890296648 0.825291654 0.861761651 0.834493074 0.837594936 0.884366594 0.916475716 0.816918837 0.860332153 0.86216642 0.824686937 0.887291505 199594031 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.890741206 0.865433835 0.889304006 0.823367843 0.874329257 0.855730505 0.865942533 0.80277526 0.885598585 0.822579664 0.884608795 0.802585712 0.782055277 0.840427954 0.880351793 0.929824289 149278793 acetylglucosaminidase Pedobacter sp. BAL39 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Pedobacter; 1.127747903 1.034557703 1.039908327 1.071270736 1.009591087 1.096998716 1.003465774 1.059918181 1.075145849 1.048717091 1.011233183 1.146928219 1.022775028 1.048645151 1.025441518 1.094041106 1.075015988 1.038096086 351717299 nirb Methylomicrobium alcaliphilum Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylomicrobium; 0.863999207 0.80614469 0.875199483 0.839285016 0.82286163 0.83009221 0.868429192 0.861602494 0.816530203 0.851673645 0.851608782 0.843588503 269935729 amyA Mobiluncus mulieris 28-1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Mobiluncus;species:Mobiluncus mulieris; 0.976014747 0.896999778 0.963502435 0.949807325 0.984981391 0.919193099 0.990974484 0.979947933 0.947085733 0.962348853 0.946027067 0.922582716 0.84423145 0.87298341 0.874986382 0.951858247 0.891954433 86571793 GAPDH_Calvin Rhodopseudomonas palustris HaA2 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 1.319143753 1.283506292 1.280024393 1.289234762 1.272978626 1.305332491 1.25543052 1.258792844 1.276634381 1.260051735 1.275564564 1.278438981 1.278311099 1.234092675 1.245179472 1.264069114 1.322635422 1.282209249 126708351 cmci Sagittula stellata E-37 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 1.159579683 1.094808736 1.106244838 1.145415119 1.060889007 1.110965748 1.087330358 1.111298926 1.116845896 1.099573706 1.089834506 1.101925013 1.053837298 1.059163689 1.00539779 1.069224628 1.117610666 1.105061428 358240172 pcpe Gordonia amarae NBRC 15530 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia amarae; 0.775552186 0.806064682 0.829682885 0.852034929 0.831695413 0.79787376 0.818705383 0.835523522 0.81197916 0.848834579 0.829166491 0.790656202 0.846426918 116201333 pme_Cdeg Chaetomium globosum CBS 148.51 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 0.832791984 0.836040309 0.813531543 0.868262068 0.820091915 0.788778837 0.843675003 0.780108024 0.841857055 0.849298402 355468506 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.906388642 0.991409293 0.974506207 0.955162717 0.98658671 0.982354366 0.913657779 0.870456168 1.030145956 0.882278753 0.867377253 0.921133185 0.906479733 0.894536229 0.829650058 0.92109099 1.003522919 0.979841191 365805267 terc Streptomyces cattleya NRRL 8057 = DSM 46488 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces cattleya; 1.122534214 1.086868361 1.074699211 1.078505172 1.055756677 1.107365856 1.100131777 1.069380551 1.086650923 1.107316739 1.062430158 1.06877719 1.035889733 1.07511258 1.023830987 1.077939666 1.073158765 1.084280416 270043665 endochitinase Serratia odorifera 4Rx13 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia odorifera; 1.112965347 1.078288101 1.105951715 1.093107205 1.091772825 1.107827019 1.089732761 1.101285278 1.093730696 1.079276037 1.110004503 1.114858089 1.088755123 1.034003254 1.07079932 1.046124365 1.110826928 1.066704119 256393366 chitinase Catenulispora acidiphila DSM 44928 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 0.795493782 0.803066632 0.793142545 0.805350111 0.785485842 0.773714428 0.851586042 238920023 amyA Edwardsiella ictaluri 93-146 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Edwardsiella;species:Edwardsiella ictaluri; 1.213790317 1.167970571 1.17410994 1.21852489 1.193881052 1.214261671 1.166745307 1.195384054 1.195557719 1.131617484 1.153625597 1.167561696 1.195554281 1.135179555 1.150483661 1.15696928 1.237873456 1.196385316 367467575 linb Patulibacter sp. I11 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Solirubrobacterales;family:Patulibacteraceae;genus:Patulibacter; 1.533326013 1.524998123 1.495405979 1.497696739 1.475619969 1.563041501 1.451652594 1.491807313 1.462996634 1.480197118 1.471712648 1.473185799 1.456521512 1.456978088 1.453232643 1.480955794 1.525808396 1.501672631 357018467 badh Mycobacterium thermoresistibile ATCC 19527 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium thermoresistibile; 0.794465165 0.793899216 254442020 RgaE Verrucomicrobiae bacterium DG1235 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales; 0.780898194 0.890190871 0.836139632 0.847710639 0.839046972 0.791826395 0.852304723 0.781778846 0.821556616 0.823587756 0.793296639 0.830927876 372266321 ppx Alteromonas sp. S89 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Microbulbifer;species:Microbulbifer agarilyticus; 1.001970909 0.999108006 0.911499675 0.98693709 0.884065278 0.959509625 0.953487738 0.992138077 0.982693553 1.003348783 0.904606993 0.947420441 0.871884526 0.906560381 0.82458443 0.880216476 0.986555974 1.015471446 29605348 pcag Streptomyces avermitilis MA-4680 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 1.401714944 1.397883928 1.376883165 1.337086244 1.352554993 1.420913794 1.334044002 1.321114831 1.325178986 1.352013911 1.350500828 1.341312838 1.323805863 1.339676876 1.3172339 1.343962436 1.375848622 1.382178877 381386867 mannanase Phycisphaera mikurensis NBRC 102666 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Planctomycetes;class:Phycisphaerae;order:Phycisphaerales;family:Phycisphaeraceae;genus:Phycisphaera;species:Phycisphaera mikurensis; 1.09622045 1.061492965 1.037714335 1.098904587 1.029504956 1.068400779 1.017539714 1.092111444 1.068044018 1.050758815 1.042902103 1.075389366 1.019267988 1.012154232 0.99768639 1.009752001 1.090834036 1.026840393 344200644 TIM Acidithiobacillus ferrivorans SS3 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus ferrivorans; 1.099344396 1.054151727 1.055567421 1.098031104 1.076654359 1.092597878 1.069194405 1.07629485 1.09537638 1.104761451 1.089897071 1.055169833 1.004690614 0.976334587 0.978043324 1.006621252 1.078007207 1.092095882 238762707 cellobiase Yersinia kristensenii ATCC 33638 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia kristensenii; 1.175311622 1.198173286 1.164158469 1.145163208 1.181830789 1.190678346 1.159445325 1.158371659 1.166406849 1.142773849 1.158472158 1.140240065 1.190802601 1.121621478 1.114029055 1.103829244 1.148290564 1.14218288 262349823 PRI Vibrio sp. RC586 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 0.867347551 0.911960809 0.810830114 0.940172534 0.836453299 0.909768495 0.850799824 0.870690942 0.914474717 0.861994938 1.003620458 0.84490398 0.831626673 0.817179886 0.87612302 0.82762407 189338852 arsc Burkholderia multivorans ATCC 17616 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 1.238565377 1.266261116 1.247264927 1.237946708 1.194648277 1.251899874 1.193141364 1.220310961 1.22708163 1.226918945 1.206769183 1.227864315 1.18493726 1.204619042 1.170168131 1.194654559 1.232652363 1.255855521 270042420 cda Serratia odorifera 4Rx13 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia plymuthica; 0.921556217 0.906477542 0.906645656 0.894863299 0.941729267 0.87525505 0.895954909 0.907315352 0.934934668 0.9183333 0.903575473 0.907228919 0.898489937 0.884150066 0.86846434 0.911613814 0.901361798 0.949193468 314981410 amyA Propionibacterium acnes HL110PA3 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium;species:Propionibacterium acnes; 0.93021257 0.783218901 0.830718463 0.947677836 166408480 one_ring_23diox uncultured bacterium Organic Remediation Aromatics Other aromatics superkingdom:Bacteria; 1.005549294 0.995727694 0.965104399 0.975481884 0.972666205 1.01864441 0.966585513 0.93051344 0.973945238 0.975945742 1.003292403 1.01505087 0.949137026 0.898880106 0.897968803 0.967268703 0.954252361 0.975086733 91686232 cmtab Burkholderia xenovorans LB400 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 1.163635585 1.140553566 1.119613996 1.136455213 1.095490709 1.182490499 1.128676109 1.130172906 1.131396993 1.175717695 1.096068437 1.130998151 1.06851107 1.135687681 1.05264354 1.109337622 1.165707968 1.140716975 359253602 rubisco Mesorhizobium alhagi CCNWXJ12-2 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium alhagi; 0.841670131 0.906142752 0.829825994 0.886484345 0.884344042 0.931925195 0.844948171 0.836029173 0.833584978 0.915471017 0.899995187 0.868941424 0.857426866 0.873715708 0.843105745 0.886560013 0.831376578 0.922153946 345126040 narb endosymbiont of Tevnia jerichonana (vent Tica) Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;species:endosymbiont of Tevnia jerichonana; 0.924556791 0.917288746 0.911948827 0.913199767 0.901687706 0.92808261 0.922131124 0.912167087 0.907722018 0.908215026 1.002539726 0.896882586 0.928307229 0.88828977 0.88449293 0.905904443 0.916501855 0.936843198 12659196 nifh Treponema sp. ZAS-2 Nitrogen Nitrogen fixation NA superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetes;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema; 0.78467544 0.791993909 340552872 terc Collimonas fungivorans Ter331 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Collimonas;species:Collimonas fungivorans; 0.905197008 0.847364457 0.887316013 0.92134977 0.872887159 0.859911242 0.911823867 0.907802093 0.92896383 0.847953694 0.83873262 0.923526409 0.866588566 0.846236494 0.846575588 0.852852347 0.946257728 0.822324774 281355050 ara Victivallis vadensis ATCC BAA-548 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Lentisphaerae;class:Lentisphaeria;family:Victivallaceae;genus:Victivallis;species:Victivallis vadensis; 1.089932351 1.095549873 1.026887164 1.032349346 1.05827344 1.063240411 1.031357739 1.068595576 1.068938178 1.060989775 1.037590076 1.021623651 1.064983157 1.034303442 1.058429416 1.037179077 1.066861626 1.089468932 315262941 amyA Mycobacterium gilvum Spyr1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 1.363605961 1.330820877 1.321330351 1.361260809 1.285995066 1.340488045 1.292607303 1.317604103 1.331654813 1.300902134 1.31478867 1.316389241 1.290005321 1.30062156 1.282176622 1.302373199 1.353655477 1.301019541 310758424 cysI Achromobacter xylosoxidans A8 Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter;species:Achromobacter xylosoxidans; 0.81802584 0.853365205 0.840600622 0.828976333 0.840977446 0.869755058 259346600 cmci Silicibacter sp. TrichCH4B Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 0.874574102 0.905094176 0.922318204 0.920726338 0.929277523 0.932404865 0.921020882 0.888928485 0.924465581 0.916281351 0.924912225 0.930798406 0.900024783 0.860479523 0.837443574 0.887627457 0.920108748 0.939293358 162453445 RgaE Sorangium cellulosum 'So ce 56' Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 1.373230112 1.373059951 1.352417337 1.362419032 1.356181448 1.396724822 1.377827458 1.366803305 1.340008493 1.355754952 1.379215323 1.376929269 1.369647236 1.351591464 1.369023402 1.370082209 1.349378492 1.350152019 159045346 soxY Dinoroseobacter shibae DFL 12 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 1.251725848 1.214407023 1.235888902 1.251528064 1.231844615 1.258033187 1.233724138 1.244143782 1.23154049 1.233841747 1.221705043 1.2561748 1.197823461 1.22338794 1.195399922 1.223978305 1.247891109 1.214127344 89094208 SoxA Oceanospirillum sp. MED92 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Neptuniibacter; 1.109612644 1.106255762 1.114755441 1.125586676 1.10470472 1.131155146 1.113667796 1.112944618 1.108160722 1.103375247 1.098628018 1.136661792 1.070963022 1.070439484 1.055797822 1.081068983 1.076194054 1.090469131 87135181 chnb Novosphingobium aromaticivorans DSM 12444 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium aromaticivorans; 0.838569736 0.835361719 0.837617621 0.844161253 0.832970964 0.820551268 0.831264702 0.812235095 0.82799537 0.829033092 0.869628289 0.830151892 0.801336728 0.84341219 238591444 chitin_deacetylase_fungi Moniliophthora perniciosa FA553 Carbon Cycling Carbon degradation Chitin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Marasmiaceae;genus:Moniliophthora;species:Moniliophthora perniciosa; 1.047033511 1.045831025 0.983054313 1.028874751 1.002471322 1.041878358 1.03066777 0.99812175 1.008045547 1.029878689 1.028243951 1.014159314 0.966237976 1.015674938 0.967337688 1.018083106 1.033773852 1.02566434 219543416 amyA Chloroflexus aggregans DSM 9485 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aggregans; 0.83984186 0.79651149 0.820982336 0.856649637 0.826588185 0.86862299 0.880685131 0.865833647 0.858586031 0.866140276 0.85321586 0.870058875 23450983 ben_bcla Thauera aromatica virulence NA NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Thauera; 0.852823821 0.882277427 0.825421804 0.890213371 0.882594094 0.838426017 0.823931703 0.816374476 0.810020759 0.857637261 0.823614933 0.826013985 0.841496162 0.822711366 0.805433637 0.863772039 0.885328672 254271897 tfda uncultured bacterium Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria; 0.847870926 0.833663547 126460067 mer Pyrobaculum calidifontis JCM 11548 Metal Homeostasis Mercury Detoxification superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum calidifontis; 1.012948169 0.975613323 1.053992759 1.024020718 1.033347568 0.977890981 1.032482993 1.034956871 1.049908254 1.028173097 0.974417833 0.976166142 0.965353192 0.984230043 0.895654914 0.905382559 0.984585434 0.999240327 167842064 TIM Burkholderia thailandensis MSMB43 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia thailandensis; 0.883202883 0.869326512 0.875027884 0.922041651 0.811842423 0.86803122 0.824375301 0.861255742 0.90997973 0.879801304 0.890665166 0.86857198 0.857887178 0.921639669 0.880437035 121543059 mer Candidatus Desulfococcus oleovorans Hxd3 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfococcus;species:Desulfococcus oleovorans; 0.88164967 0.899514125 0.928484326 0.87142388 0.878490668 0.863503207 0.884889373 0.871086195 0.839931404 0.840017791 0.860952769 0.847579259 0.831844337 0.841965891 0.894236415 322515475 cysJ Actinobacillus ureae ATCC 25976 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Actinobacillus;species:Actinobacillus ureae; 0.870263542 0.800566281 73539509 catechol_b Ralstonia eutropha JMP134 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 0.91969887 0.903832074 0.890610502 0.88188296 0.922803638 0.900223672 0.921705909 0.908060388 0.860696715 0.901192535 0.884334599 0.844451325 0.854381106 0.810515777 0.80966927 0.916965121 0.860559676 149811649 dehh109 Roseobacter sp. AzwK-3b Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 0.935388186 0.920739558 0.892421479 0.887086369 0.899501044 0.895049918 0.898437302 0.893987689 0.883203416 0.862883805 0.877070184 0.869456476 0.854278836 0.837159373 403722670 catb Gordonia rhizosphera NBRC 16068 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia rhizosphera; 1.42007205 1.395401251 1.378964667 1.376258008 1.372556523 1.425063761 1.357492862 1.367308144 1.357898281 1.378771792 1.369473298 1.367331596 1.368088307 1.357871795 1.348709641 1.373911186 1.399082317 1.385343992 169867340 Dyp Coprinopsis cinerea okayama7#130 Organic Remediation halogenated compounds NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 0.933701031 0.958753633 0.947598187 0.996727943 0.941087639 0.937457891 0.957986806 1.00809777 1.017192283 0.967591285 0.939856106 0.946809011 0.908141882 0.973046858 0.833290256 0.895488048 0.977411751 0.926389737 320529970 xyla Selenomonas artemidis F0399 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas artemidis; 0.841329491 0.841428672 0.819123398 0.92966918 0.774508966 0.836881434 0.864890731 0.804839082 0.777920547 0.782547124 0.892306771 271966756 chitinase Streptosporangium roseum DSM 43021 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 1.107827905 1.134263853 1.164723342 1.136706622 1.107971955 1.152580964 1.109918033 1.110621885 1.101202303 1.082243877 1.097302524 1.10438657 1.091236415 1.106263176 1.059285159 1.084447829 1.124529215 1.069849286 61611849 nagg Delftia tsuruhatensis Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia; 1.291154105 1.268958147 1.243915062 1.27116643 1.23559002 1.29373086 1.234123193 1.273198684 1.25193431 1.254560818 1.227122503 1.24640901 1.231688732 1.228979085 1.257073795 1.23450756 1.278345802 1.267559441 291455614 amyA Bifidobacterium breve DSM 20213 = JCM 1192 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium breve; 1.13295208 1.086275065 1.110545971 1.141619326 1.108969348 1.115683856 1.080375755 1.129184177 1.123467713 1.102121063 1.107596302 1.117676789 1.081478047 1.110934296 1.087509061 1.102641776 1.120288043 1.07063001 196112375 mer Alteromonas macleodii 'Deep ecotype' Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alteromonas;species:Alteromonas macleodii; 1.207297353 1.203229258 1.199996945 1.227522948 1.176555006 1.207052025 1.166275805 1.193586932 1.231525457 1.189239518 1.174992438 1.202086673 1.183506849 1.141301176 1.185310166 1.156576146 1.223382269 1.183247568 297559557 acetylglucosaminidase Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Nocardiopsis;species:Nocardiopsis dassonvillei; 0.908078552 0.978018004 0.901269127 0.966108235 0.967276541 0.968570607 0.953552292 0.928614373 0.922496818 0.937728436 0.93152806 0.956013851 0.922188219 0.942797385 0.940121722 0.899034892 0.922386165 0.925685214 84511185 alkb Loktanella vestfoldensis SKA53 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Loktanella;species:Loktanella vestfoldensis; 1.342384446 1.369935214 1.297846885 1.303508095 1.276228023 1.352992605 1.302607483 1.308412799 1.30333844 1.326796521 1.280339483 1.319729272 1.250410763 1.288540073 1.219070989 1.306395529 1.311731955 1.313779848 118435096 phn Stappia aggregata IAM 12614 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 0.815743091 0.841178776 0.837465937 0.79141149 0.84809719 0.832504532 0.835160825 0.854463443 0.797687743 0.83130077 0.811820274 0.847402368 0.848791053 0.835452377 227960908 bphF1 Thermomonospora curvata DSM 43183 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Thermomonosporaceae;genus:Thermomonospora;species:Thermomonospora curvata; 0.970659855 1.05564307 0.998256161 1.024611777 1.001551269 1.003026785 0.97253265 1.025082394 1.004338708 0.981479692 0.994590862 1.03118197 0.95163591 0.968954644 0.943262381 0.973511209 1.016426399 0.994340617 329945637 amyA Actinomyces sp. oral taxon 170 str. F0386 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 170; 0.934855326 0.868341789 0.930171917 0.955480617 0.925522826 0.934023654 0.89200155 0.896225078 0.922352348 0.947190945 0.952543855 0.942677088 0.833860027 0.844567982 0.84165389 0.857697428 0.979216671 0.973055613 335335199 rubisco Verrucomicrobia bacterium 4ac Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Verrucomicrobia; 1.088048126 1.137718458 1.053910232 1.09264208 1.05749923 1.086630032 1.036322855 1.061402177 1.067357564 1.059284005 1.072188355 1.083868103 1.034347562 1.060226467 1.047578399 1.080423784 1.07531316 1.069501682 311900250 endoglucanase Kitasatospora setae KM-6054 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Kitasatospora;species:Kitasatospora setae; 0.895166675 0.952474975 0.900897989 0.931818352 0.912298286 0.931663594 0.864916189 0.879934173 0.876724794 0.866652961 0.862458943 0.911839084 0.900443308 0.85483952 0.814447009 0.825685116 0.91888224 0.927606547 290878902 mer uncultured bacterium Metal Homeostasis Mercury Detoxification superkingdom:Bacteria; 0.927653342 0.865842969 0.841840992 0.88565489 0.899437532 0.843769059 0.868103482 0.849910801 0.907473628 0.82614577 0.831471833 0.873579898 0.880187218 0.890736978 0.8555466 0.870915196 94971855 pcag Deinococcus geothermalis DSM 11300 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus geothermalis; 1.387351047 1.346407434 1.321111118 1.366639429 1.315119057 1.382776684 1.313016227 1.354731853 1.33300974 1.326740797 1.324977027 1.338428987 1.305265004 1.332745296 1.304613735 1.337776131 1.355497514 1.304104894 398138445 bphF1 Pseudomonas sp. GM25 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.817873089 0.826398627 0.816604258 0.861168028 0.825066696 0.832109647 0.83929261 0.806727133 0.856434346 0.834193641 383759238 ppk Rubrivivax gelatinosus IL144 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Rubrivivax;species:Rubrivivax gelatinosus; 0.855881384 0.834271088 0.881721283 0.895408288 0.839153691 0.882107126 0.908507317 0.886844418 0.850117367 0.839660478 0.856548018 0.882294764 0.859220436 0.79245615 0.885822969 0.863972087 269785895 poba Sphaerobacter thermophilus DSM 20745 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Chloroflexi;class:Thermomicrobia;order:Sphaerobacterales;family:Sphaerobacteraceae;genus:Sphaerobacter;species:Sphaerobacter thermophilus; 0.864281647 0.795051557 0.814875205 0.856314027 0.811162741 0.793977263 0.842472848 0.87785175 0.86687185 0.813824305 3925395 napa Pseudomonas sp. G-179 Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae; 0.900147605 0.885862989 0.944930625 0.908822605 0.900399856 0.892779211 0.974096031 0.876530734 0.911051806 1.004237449 0.89116659 0.905285971 0.829237787 0.834207674 0.786949228 0.899043376 0.948762488 0.853200275 375077524 xyla Paenibacillus sp. Aloe-11 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 0.915693321 0.957285876 0.914668292 0.944802704 0.953503965 0.874095928 0.939099136 0.930096841 0.905641223 0.948985742 0.914604578 0.950317612 0.892681336 0.860157838 0.917505444 0.922326759 0.891861824 0.890120448 302680432 p450aro Schizophyllum commune H4-8 Organic Remediation Aromatics polycyclic aromatics superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 1.036300696 1.031952624 1.037995555 1.082315058 1.040657108 1.066814096 1.034640851 1.056436263 1.075466524 1.095400601 0.997164778 1.038030539 1.084766294 1.05122138 1.008024753 1.125819886 1.033284473 1.050917087 384040843 aoxb uncultured bacterium Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 1.201427354 1.181280331 1.160937972 1.179355087 1.173747599 1.184603958 1.152449574 1.166399114 1.165427226 1.149983011 1.152135001 1.160373857 1.167607061 1.123913202 1.142403966 1.141873382 1.191201595 1.155324468 118587877 ben_bcla Stappia aggregata IAM 12614 virulence NA NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 0.842645372 0.845077435 0.884690373 0.814874159 0.840196177 0.825610594 375081324 cda Paenibacillus sp. Aloe-11 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 0.961995947 0.924482575 0.980975238 0.943464956 0.968634624 1.002891825 0.997172731 0.976219788 0.907318789 0.961787293 0.971013419 0.922021522 0.900647714 0.883363026 0.844893774 0.844243243 0.963892119 0.936403409 203366799 cara Sphingomonas sp. JS1 Organic Remediation Aromatics Heterocyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 0.861413798 0.910951228 0.818141154 0.869115526 0.848774185 0.808029994 0.898828632 0.849220669 0.879989311 0.906629955 0.864147017 0.846689856 0.843510223 0.889471454 0.829695156 0.884423209 0.931095315 400536703 one_ring_23diox Mycobacterium colombiense CECT 3035 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium colombiense; 0.971650305 1.011019521 0.960628168 1.005485643 0.999503107 0.963687331 0.966360813 0.997556085 0.975991976 0.969857273 0.942043338 0.998869232 0.983231639 0.942929447 0.959866765 0.947593575 0.975600793 0.986477635 241660026 axe Penicillium aurantiogriseum Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium; 0.829304428 0.848378571 0.800669765 0.826068618 0.817977159 0.849084369 0.814236126 0.813740887 0.833830505 34017076 pmoa uncultured bacterium Carbon Cycling Methane Methane oxidation superkingdom:Bacteria; 1.170495822 1.124887882 1.087329912 1.122555383 1.116500656 1.111554084 1.076538013 1.115170908 1.133674204 1.094945304 1.061913166 1.121222275 1.092044421 1.079777056 1.03962017 1.105335406 1.135938568 1.126091117 118424379 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.844714128 0.86307457 0.807598436 0.803572069 0.826478286 0.825987345 197621366 rubisco uncultured bacterium Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria; 0.963991676 0.910958043 0.966975432 0.976872166 0.951593595 0.979119329 0.940799788 0.99015504 0.980397846 0.940744308 0.960500172 0.958477073 0.950857177 0.974118502 0.961220211 0.943151131 0.962385258 0.921616129 384439687 catechol_b Thermus sp. CCB_US3_UF1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus; 0.955637004 0.9047651 0.912684337 0.947456755 0.955136412 0.956340167 0.948052716 0.934970914 0.913559578 0.889152286 0.94120502 0.946608123 0.919377894 0.864345112 0.819687883 0.865458271 0.9263204 0.890599572 119956897 alkb Mycobacterium vanbaalenii PYR-1 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 0.971646107 1.015407432 0.93363649 0.921884495 0.959923904 0.947947977 0.920475588 0.923756928 0.955788062 0.965238531 0.946774702 0.938693532 0.937707308 0.960278359 0.909873807 0.950212792 0.942192329 0.982453681 46199354 SoxB Thermus thermophilus HB27 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus;species:Thermus thermophilus; 1.015167567 1.024438904 1.028954185 1.032218268 1.020809932 1.037237745 1.005811045 0.979652596 1.025558228 0.993554132 0.971128636 0.999731848 0.989501779 0.970480886 0.954528179 0.966460616 1.023156801 1.026341469 88800620 GAPDH_Calvin Reinekea sp. MED297 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Reinekea;species:Reinekea blandensis; 0.815300592 0.808062131 0.783408756 0.851330672 0.809842351 0.82799377 0.838106256 0.831283652 0.831546934 0.80572211 0.857667861 87280972 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.757838064 0.812551366 0.830029809 0.793445064 0.824204952 0.807374781 169242064 mer Mycobacterium abscessus Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 0.844089677 0.849617992 0.848718962 0.809454419 0.832631114 0.814348339 0.796869155 0.828626568 0.873255184 300702563 endoglucanase Ralstonia solanacearum CFBP2957 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 0.881001934 0.901141484 0.894485202 0.927721274 0.8765998 0.893181666 0.899419062 0.900840033 0.928101518 0.918837352 0.882487175 0.92904433 0.892427018 0.848101255 0.89084513 0.924535954 0.912033353 302477514 pme Streptomyces griseoflavus Tu4000 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseoflavus; 1.157358639 1.154169603 1.102171806 1.141324286 1.048923745 1.138742729 1.084426898 1.113896117 1.148585796 1.12100292 1.074540095 1.092459193 1.040521014 1.084073793 1.005891291 1.064995991 1.16785279 1.137209531 83941805 alkb Sulfitobacter sp. EE-36 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 0.864559878 0.833229061 0.856289731 0.843189508 0.868905438 0.871672781 0.848669268 0.84299226 0.842075862 0.847341679 0.802705766 0.799001355 0.917928459 0.912247925 160917441 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.098183799 1.084568578 1.074934004 1.090183147 1.056364844 1.063515349 1.053594248 1.064602821 1.048978364 1.046702006 1.048294508 1.087498864 1.053869499 1.001401971 1.032301461 1.040550878 1.082712375 1.046651714 338168419 catechol_b Cupriavidus necator N-1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 1.027501921 1.041424246 0.987718406 0.996109122 1.034824792 1.049635497 0.971360106 0.96670194 0.961362198 1.027001775 0.993529924 1.015845367 1.017276744 1.006142668 0.988868871 0.998120284 1.021600727 1.032886838 109453742 FBP_aldolase Roseobacter denitrificans OCh 114 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter denitrificans; 0.986309191 1.033087811 0.969688883 1.043124809 1.001942025 0.949591591 1.067119689 0.989259969 1.095347616 0.962355681 0.93132328 0.95861086 0.976468921 0.938860736 0.898254286 0.958026278 0.984439447 1.045138434 239809556 phenol_oxidase Coriolopsis gallica Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Coriolopsis; 0.970816241 0.969723097 0.900133871 0.970388419 0.844193425 0.961251198 0.862409472 0.941061139 0.938638573 0.921042347 0.869504027 0.933514994 0.842751911 0.91917011 0.858848832 0.882252997 0.940696436 0.944914427 23015524 hbh Magnetospirillum magnetotacticum MS-1 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum magnetotacticum; 1.046427922 1.040244183 1.004498889 1.029409273 0.991495502 1.011429905 0.991671607 0.99030487 1.030906405 1.02490689 1.006306938 1.002861697 0.981971614 0.997717196 0.985710323 0.987952714 1.029156864 1.054127414 357025507 TIM Mesorhizobium amorphae CCNWGS0123 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium amorphae; 0.875623715 0.885363424 0.826469353 0.892125731 0.842525703 0.825930768 0.869440992 0.830453382 0.876692021 0.864695713 371718789 amyA Caldithrix abyssi DSM 13497 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;genus:Caldithrix;species:Caldithrix abyssi; 0.772366222 0.843994791 0.835056746 0.865730913 0.85760535 0.808100836 0.866143135 0.862375923 0.847354903 0.843252662 0.843652981 0.851477761 0.810069998 0.822186855 158312423 arsc Frankia sp. EAN1pec Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 1.203543928 1.222295333 1.165596711 1.211208781 1.207920512 1.232630342 1.183665527 1.179852997 1.190119401 1.182703926 1.204930001 1.206455267 1.201183876 1.183674504 1.175757078 1.186375473 1.207987359 1.185780865 222438553 xyla Labrenzia alexandrii DFL-11 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia alexandrii; 0.831682604 0.817060471 0.874212736 0.977805311 0.831898578 0.854828833 0.925320139 0.943246539 0.892704821 0.827775394 0.920220653 0.823148122 0.808924606 0.857948412 0.841917213 0.868107839 0.840515112 33320469 dsrB Desulfovibrio halophilus Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 0.962982207 0.989237199 0.984140632 0.955926801 0.967844745 0.977979071 0.959457882 0.939033841 0.942453588 0.947007176 0.896493871 0.921968015 0.931400916 0.891290855 0.876479372 0.91050848 0.971269127 0.971387626 383826160 linb Mycobacterium xenopi RIVM700367 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium xenopi; 0.811733395 0.913522648 0.855320099 0.821862442 0.826413522 0.787522905 0.828722607 86136004 dehh109 Roseobacter sp. MED193 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 1.19216026 1.207756887 1.171469245 1.156089958 1.163311917 1.196167426 1.133137854 1.142724131 1.173827999 1.13889995 1.137970513 1.141153821 1.135539615 1.143492925 1.107369702 1.166850054 1.201527978 1.198371696 41326996 cysI Corynebacterium glutamicum ATCC 13032 Sulfur Other NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium glutamicum; 1.185609322 1.203244553 1.158979105 1.164241336 1.132537773 1.18006243 1.135952272 1.158629726 1.13525458 1.178090468 1.135592317 1.149558345 1.120476356 1.154451613 1.080639735 1.14251452 1.165162996 1.183695387 258404394 tehb Desulfohalobium retbaense DSM 5692 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfohalobiaceae;genus:Desulfohalobium;species:Desulfohalobium retbaense; 0.91684789 0.952175152 0.876759851 0.963791506 0.900786403 0.901754728 0.86227865 0.909360425 0.93971213 0.911781076 0.885269401 0.907378716 0.84112417 0.909810752 0.836920624 0.906873088 0.932942524 0.946681974 163746271 alkk Oceanibulbus indolifex HEL-45 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanibulbus;species:Oceanibulbus indolifex; 0.828737573 0.807538584 0.786329857 0.825849381 0.807423486 0.833598482 0.797900413 0.813290023 0.770913894 0.81474334 107103967 urec Pseudomonas aeruginosa PACS2 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 0.772868189 0.795638828 0.760557754 0.799211058 287907 nirk Pseudomonas chlororaphis Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas chlororaphis; 1.208091273 1.240003418 1.109901339 1.200445075 1.168833353 1.142737419 1.175193212 1.181402208 1.180529367 1.167683539 1.120920984 1.148363737 1.160777212 1.172817905 1.04192575 1.109442852 1.172572715 1.226306593 74318503 dsra Thiobacillus denitrificans ATCC 25259 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus;species:Thiobacillus denitrificans; 0.903028012 0.941170916 0.912573084 0.87949348 0.864091374 0.903038776 0.873300757 0.901605459 0.921469497 0.908624399 0.848037149 0.844169084 0.835821616 0.875449599 0.854330802 0.90526107 0.904515625 332340313 amyA Cellulomonas fimi ATCC 484 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas;species:Cellulomonas fimi; 1.247794877 1.255018182 1.229772571 1.22407941 1.232963792 1.27258541 1.225170799 1.230676511 1.228023231 1.245855382 1.248454467 1.224497095 1.205854961 1.18258008 1.165079004 1.197453659 1.259930606 1.250223183 298282439 ppx Neisseria sp. oral taxon 014 str. F0314 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria sp. oral taxon 014; 1.21730911 1.196666323 1.194949145 1.199230941 1.151053393 1.207939945 1.140832617 1.142948802 1.152169095 1.162403442 1.157824258 1.126369284 1.166714557 1.134122399 1.113092426 1.140591259 1.219072672 1.169514852 28629801 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.119721941 1.083495536 1.053107253 1.103515491 1.09355904 1.103956951 1.085978659 1.055458115 1.068096122 1.073928054 1.037505099 1.086409676 1.063448277 1.042136065 1.032703991 1.083270084 1.11906868 1.097609736 240139145 soxY Methylobacterium extorquens AM1 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium extorquens; 0.860898666 0.832617738 0.845251895 0.821499238 0.899810847 0.832008161 0.880796008 0.874690713 0.872715327 0.862547267 0.871734877 0.870922913 0.846602095 0.799137385 0.823526273 0.823174028 0.859648836 0.857216071 18160775 sucA_DiC4HB Pyrobaculum aerophilum str. IM2 Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum aerophilum; 1.072163445 1.025791285 1.042670258 1.042973449 1.050714716 1.085702064 1.059828833 1.032093578 1.032678309 1.028753415 0.982523526 1.020470951 0.990858807 0.977489592 0.968567292 0.985106801 1.040805012 1.078229954 170027537 napa uncultured bacterium Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria; 0.86351245 0.957671887 0.827874426 0.918403438 0.897839729 0.968248976 0.851969698 0.83798909 0.955657355 0.897511332 0.929512763 0.873109329 0.914797161 0.848209115 0.813021241 0.960481028 120591561 terc Acidovorax avenae subsp. citrulli AAC00-1 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax citrulli; 1.193524063 1.187515095 1.192193208 1.20246656 1.181337471 1.180044865 1.169754082 1.228591605 1.181844378 1.182360944 1.193819174 1.201134193 1.149503752 1.143106913 1.127246582 1.165646007 1.176919891 1.176278184 251847179 chitinase Paenibacillus sp. oral taxon 786 str. D14 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus sp. oral taxon 786; 0.846210109 0.824724327 0.80971905 0.879434508 0.799140876 0.839977953 0.849868937 0.840028413 0.842542519 0.868687651 0.857962139 163758366 ppx Hoeflea phototrophica DFL-43 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Hoeflea;species:Hoeflea phototrophica; 0.964494014 0.907743141 0.952687192 0.958400688 0.967679155 0.951205322 0.926758735 0.924276064 0.987224478 0.93807189 0.968539637 0.96832166 0.931372311 0.913836374 0.896184162 0.935182807 0.924093631 0.920546005 27884046 urec Burkholderia sp. RS99 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 0.79819842 0.844752445 0.771235534 0.820260446 0.777641928 0.788907142 0.829345153 256830691 acetylglucosaminidase Desulfomicrobium baculatum DSM 4028 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfomicrobiaceae;genus:Desulfomicrobium;species:Desulfomicrobium baculatum; 0.995213186 1.045956146 0.962012522 1.005429238 0.9890686 1.005349109 0.930737222 0.960460034 0.967181154 0.945456032 0.930878111 0.93438703 0.941016285 0.934090569 0.993761496 0.920638724 1.010431194 0.985953009 242222293 pme_Cdeg Postia placenta Mad-698-R Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Postia;species:Postia placenta; 1.026153532 1.015471518 0.965811226 1.011019574 0.983768046 1.005479466 0.981912895 0.97313248 0.992516119 1.015022613 0.972842924 0.985388815 0.9542919 0.956345557 0.949329114 1.008577266 1.02328175 1.028886722 385763854 dsrB uncultured bacterium ws085G8 Sulfur sulfite reduction NA superkingdom:Bacteria; 1.472740113 1.432123969 1.42926118 1.428620229 1.396487488 1.43994363 1.398051709 1.40248514 1.41472251 1.409630822 1.415598807 1.422629077 1.376569456 1.364147074 1.361710836 1.385713739 1.450976861 1.420100113 8546939 pectinase (pectate_lyase) Streptomyces coelicolor A3(2) Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 1.077153802 1.044602821 1.067684828 1.098251311 1.02288713 1.069001898 1.048336941 1.102596471 1.082827591 1.072409731 1.029156784 1.058054823 0.989691413 1.038146868 0.978834854 1.030851685 1.064413361 1.036131308 302435634 xylg Streptomyces sp. AA4 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 1.290257749 1.122507741 1.163130584 1.202247446 1.153839016 1.198840385 1.164272917 1.165511838 1.192493432 1.140328079 1.143809447 1.177192203 1.138557838 1.12045024 1.089947365 1.174205805 1.205420542 1.11329856 66766652 vana Xanthomonas campestris pv. campestris str. 8004 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas campestris; 0.798545066 0.811907004 0.848796969 0.861601743 0.829754606 0.875498834 0.834740888 0.823592915 49612292 cmci Pectobacterium atrosepticum SCRI1043 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium atrosepticum; 0.951294522 0.938435139 0.941158798 0.987364459 0.975578553 0.969673299 0.951930104 0.997415611 0.981496892 0.957780914 0.941968718 0.947922212 0.917957551 0.857364215 0.873826893 0.867689573 0.963752499 0.944496651 19915122 trzn Methanosarcina acetivorans C2A Organic Remediation Herbicides related compound NA superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosarcinaceae;genus:Methanosarcina;species:Methanosarcina acetivorans; 0.841095557 0.858697321 0.822623046 0.851951938 0.850724473 0.826855315 0.807001899 0.845840745 0.835448451 0.833567302 0.824781452 0.820353135 0.858872145 0.87289462 339453152 tehb Streptococcus sp. oral taxon 056 str. F0418 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus sp. oral taxon 056; 1.155150791 1.099283066 1.099441722 1.110688543 1.182625717 1.130107442 1.1610564 1.117721159 1.118900301 1.197455302 1.179933121 1.163203745 1.115498315 1.184455296 1.089787779 1.1278852 1.085478368 1.113342609 26278932 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.878015473 0.877069606 0.903919437 0.85647547 0.810545955 0.914612985 0.885634094 0.861437635 0.855949834 0.858330893 0.915170489 0.875069663 1.04396267 0.83579525 0.844430237 0.83310822 0.86508869 0.876763293 154245465 SoxC Xanthobacter autotrophicus Py2 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 0.983021468 0.971601432 0.940383823 0.969376455 0.992510179 0.943815214 0.976863811 0.94991919 0.960871919 0.930912581 0.963306077 0.963832716 1.003675751 0.927982592 0.956809607 0.931824256 0.952195172 0.969916358 359790462 exaa(moxf) Mesorhizobium alhagi CCNWXJ12-2 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium alhagi; 0.98924877 0.984272714 0.909386301 0.963556431 0.924318768 0.935299315 0.939444524 0.910193184 0.955660469 0.956222583 0.953134713 0.949014034 0.9164227 0.937542586 0.906629194 0.959824749 0.981135411 0.998640118 154351065 mdld Bacillus amyloliquefaciens FZB42 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus amyloliquefaciens; 0.971576969 0.884009124 0.875055164 0.983277633 0.964525892 0.886334689 0.979183235 0.931226113 0.951708075 0.882696993 0.885434221 0.917327714 0.906959819 0.81830871 0.801463717 0.890997055 0.901226132 0.955045396 332663400 xylanase Haliscomenobacter hydrossis DSM 1100 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Saprospiraceae;genus:Haliscomenobacter;species:Haliscomenobacter hydrossis; 1.085902885 1.118137571 1.096252111 1.09884574 1.100406438 1.172340468 1.066072836 1.053061241 1.049830999 1.07498884 1.05524964 1.092863683 1.084720968 1.108578582 1.18802926 1.09292625 1.116686345 1.163583166 87281302 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.128189353 1.119645675 1.143611325 1.181816474 1.153490983 1.13885751 1.156659433 1.190588728 1.138573101 1.115227745 1.137076256 1.176672619 1.107810692 1.095147164 1.103657156 1.120217057 1.109218724 1.124185311 109625739 trza Haloquadratum walsbyi DSM 16790 Organic Remediation Herbicides related compound NA superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloquadratum;species:Haloquadratum walsbyi; 0.898019809 0.863430002 0.902641082 0.872080112 0.867116307 0.867721422 0.860851453 0.850791492 0.943656795 0.866916686 0.970709425 0.80937119 0.937104689 0.830708503 0.855526736 0.883379699 0.883295938 118470726 cpna Mycobacterium smegmatis str. MC2 155 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 1.495168152 1.44649273 1.443857136 1.443353721 1.432475414 1.486960319 1.416679765 1.418084019 1.438929876 1.416343743 1.434248563 1.427303767 1.416440551 1.391065912 1.414904686 1.425290501 1.477338841 1.423978288 160702501 tfda Phaeosphaeria nodorum SN15 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Phaeosphaeriaceae;genus:Parastagonospora;species:Parastagonospora nodorum; 0.820837535 0.794872554 0.763832978 0.830175116 0.866226017 0.801122262 0.826829046 0.85789618 0.926715735 0.804486295 0.775567065 0.824983237 0.949388572 0.894752433 14715443 catechol_b Pseudomonas putida Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 1.126538245 1.086512796 1.076367225 1.097948122 1.079953438 1.086574942 1.087516625 1.051751087 1.089568718 1.073989352 1.084984157 1.115484395 1.066356297 1.060164499 1.024325035 1.101158987 1.122360577 1.091343242 62003563 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.054840907 1.044450395 1.102498942 1.027352264 1.003812917 1.034830895 1.018482363 0.99743798 1.000671265 1.04246068 1.107643225 1.068782053 1.002648497 1.045599937 0.935814709 1.229278221 1.007464318 1.017287007 262209064 poba Comamonas testosteroni CNB-2 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 1.02980617 1.003572876 0.993659715 1.051879941 0.999676524 1.003928307 0.981964047 0.985818342 0.999161409 1.007531716 0.969073831 1.013869464 0.986869614 0.974864197 0.962264459 0.99467613 1.027111643 1.006247288 112462205 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.875844102 0.844780197 0.802862362 0.844972397 0.83211718 0.808065377 0.806858872 0.828351628 0.872861559 389865311 amyA Modestobacter marinus Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Geodermatophilaceae;genus:Modestobacter; 1.412874922 1.380305821 1.35601098 1.354811304 1.347449816 1.382505216 1.341039496 1.356153153 1.349419112 1.337327752 1.347884348 1.361126693 1.328688583 1.32217224 1.34211322 1.349826367 1.351093466 1.328588117 302335100 CsoS1_CcmK Olsenella uli DSM 7084 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Olsenella;species:Olsenella uli; 0.805156718 0.78656994 0.806006072 0.837150568 398867314 xylj Pseudomonas sp. GM78 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 1.237129315 1.205388213 1.18921512 1.216178747 1.173070745 1.233307358 1.158133115 1.176366863 1.180426106 1.196100744 1.16978497 1.191040673 1.217938862 1.199308288 1.189666233 1.173775635 1.271053338 1.223224862 385789118 gdh Fibrobacter succinogenes subsp. succinogenes S85 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Fibrobacteres;class:Fibrobacteria;order:Fibrobacterales;family:Fibrobacteraceae;genus:Fibrobacter;species:Fibrobacter succinogenes; 0.968459668 0.949725856 0.926131965 0.998754525 0.984037194 0.996225145 0.972353831 0.989649576 1.058482171 0.981165111 0.970262659 0.973592475 0.981619159 0.960117171 0.944770668 0.980727382 1.029189437 0.969446894 359362756 dehh Achromobacter arsenitoxydans SY8 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter;species:Achromobacter arsenitoxydans; 1.130890386 1.140696749 1.108770382 1.118885427 1.104609441 1.133731004 1.108786108 1.10226505 1.105433602 1.096110834 1.124184542 1.119017804 1.087973304 1.07404977 1.105984752 1.145512487 1.12312726 1.112130807 139478585 mer uncultured soil bacterium Metal Homeostasis Mercury Detoxification superkingdom:Bacteria; 1.027982206 1.02829145 1.014160115 1.016822564 0.956719392 1.028160834 1.012231923 1.016286921 0.991487269 1.031108901 0.945339979 1.009682109 0.947622853 0.968395257 0.921607151 0.976210897 0.998735529 1.026065328 363712066 terc Acetobacteraceae bacterium AT-5844 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae; 1.007641242 0.999680815 1.034875594 1.026780996 0.953274231 1.030154544 1.006149713 1.001215599 1.016231785 1.000640818 0.964060518 1.004481889 1.000599291 1.00264904 0.940257593 0.959806597 1.017515856 1.007311981 157100694 pmoa uncultured bacterium Carbon Cycling Methane Methane oxidation superkingdom:Bacteria; 0.885904445 0.870271776 0.908659217 0.89239456 0.810375285 0.85292955 0.895738637 0.822693615 0.913716639 0.90444695 89512850 nifh uncultured nitrogen-fixing bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 1.189804662 1.126879582 1.127363944 1.184643872 1.144508726 1.134342384 1.129685424 1.168455633 1.165018434 1.135063119 1.141231578 1.158512709 1.108333266 1.092017067 1.14482621 1.138198566 1.17313601 1.116258952 218564086 phenol_oxidase uncultured fungus Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi; 0.943218098 0.955372131 0.908137633 0.965596766 0.890557266 0.917841344 0.925256738 0.940051327 0.979052449 0.905428508 0.912619396 0.984300036 0.916309525 0.912243302 0.916621444 0.987292046 0.95953754 0.933273774 83757783 amyA Salinibacter ruber DSM 13855 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Rhodothermaceae;genus:Salinibacter;species:Salinibacter ruber; 0.893625174 0.953338218 0.893014053 0.915462497 0.9006647 0.89936069 0.87924178 0.866200905 0.878330325 0.870956976 0.820418513 0.833140552 0.81922828 0.907464715 0.84232616 0.86506617 0.888944496 0.906188808 384215862 mdlc Bradyrhizobium japonicum USDA 6 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 1.301927615 1.261737319 1.186303866 1.208862608 1.135187646 1.191778281 1.141076653 1.15986183 1.165822097 1.165606757 1.183793436 1.18232334 1.140054085 1.144821405 1.14069247 1.170076013 1.202322837 1.162739879 297151160 amyA Streptomyces pristinaespiralis ATCC 25486 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces pristinaespiralis; 1.049619515 1.021310353 1.017078885 1.011406243 0.978902249 1.024726899 0.962701934 1.003370889 1.011241023 1.009724112 0.999899524 0.989248549 0.983799752 1.029989152 0.98526407 0.984872502 1.036905347 1.020715688 310822556 chitinase Stigmatella aurantiaca DW4/3-1 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 1.260617767 1.226498855 1.232209432 1.283721913 1.270070154 1.252293989 1.245953561 1.283396191 1.259045503 1.240399249 1.256434444 1.291456848 1.234666924 1.209783397 1.242515985 1.257024366 1.244215665 1.242510803 118705684 vana Sphingomonas wittichii RW1 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 1.134364158 1.160054368 1.116986288 1.147407654 1.090007823 1.141593343 1.109793041 1.159799878 1.124284172 1.132427627 1.090084989 1.161868877 1.094725468 1.123742509 1.119057463 1.119174863 1.11929247 1.126938279 331699711 cpnb Pseudonocardia dioxanivorans CB1190 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Pseudonocardia;species:Pseudonocardia dioxanivorans; 1.075374016 1.064238585 0.974559632 1.028540972 1.03544991 0.998878611 1.027147441 1.071222242 1.11070109 0.976747325 1.009296766 1.106912906 1.022587117 0.961924311 0.918793816 1.0516052 1.025939672 1.014482012 116075362 CsoSCA Synechococcus sp. RS9916 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 0.843933477 0.865156117 0.833850281 0.808015326 0.80602738 0.822711466 0.856083802 0.835915997 0.818663476 422314091 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.993313316 0.987218852 0.975247192 0.97452728 1.019904407 0.994848187 1.029668686 0.950897838 1.008817698 1.034450742 1.035996948 1.002500893 1.006692704 0.990659397 0.952989514 0.949195418 0.989870938 0.999851104 340535793 arsc Corynebacterium variabile DSM 44702 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium variabile; 0.822280941 0.839718256 0.802370439 0.892813035 0.806178812 0.821007224 0.840560318 0.84132545 0.826026951 0.839421045 0.878247111 0.880436573 206679504 ppx Rhodobacterales bacterium HTCC2083 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 0.767701936 0.824932459 343463013 arsc Ketogulonigenium vulgarum WSH-001 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ketogulonicigenium;species:Ketogulonicigenium vulgare; 0.986006044 0.947350994 0.975049711 0.971738748 0.984070598 0.970212239 1.011417348 1.007372688 0.945331855 0.987741712 0.954743303 0.977967991 0.932263492 0.915375125 0.930653303 0.945027527 0.983860936 1.030125993 326411946 nirs Polymorphum gilvum SL003B-26A1 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;species:Polymorphum gilvum; 0.959481639 0.956834962 0.921093184 0.943317564 0.96922793 0.936892231 0.896737057 0.906197083 0.925820668 0.97121493 0.945254727 0.920727757 0.889455598 0.866275979 0.791114619 0.896113356 0.908589263 0.941040925 192799554 ara Geobacillus sp. Y412MC10 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 0.923723655 0.84048203 0.871105224 0.977799746 0.874845391 0.940647545 0.902007032 0.891749858 0.916136049 0.831542033 0.853678919 0.887680366 0.875451905 0.843431985 0.855459067 0.864566192 0.966297335 0.873169212 164455292 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 0.86177446 0.820909712 0.816991017 0.783828839 0.851943472 0.824989694 0.824684025 0.792748692 0.828117088 0.854448119 0.879721488 148254289 gdh Bradyrhizobium sp. BTAi1 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.895264148 0.871226171 0.861848713 0.89670035 0.890091733 0.848942655 0.877250196 0.90479131 0.896107577 0.872967186 0.868901695 0.903146385 0.814942517 0.820808003 0.808691937 0.867657928 0.899122686 0.915225058 340795694 ppx Corynebacterium variabile DSM 44702 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium variabile; 1.00371439 0.978321171 0.939647044 0.924822246 0.901793381 0.997124261 0.861622307 0.903527065 0.969447743 0.947164035 1.015196122 0.898301305 0.895193344 0.873126502 0.900393243 0.920940992 0.963988974 0.972687016 13423949 cmci Caulobacter crescentus CB15 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter vibrioides; 1.203775855 1.188745096 1.176289773 1.161349401 1.161784582 1.177707201 1.146287045 1.129884322 1.167865717 1.149453758 1.151624109 1.170915682 1.143157623 1.121536814 1.138066805 1.137437524 1.194347679 1.173059835 326547826 badh Marinomonas mediterranea MMB-1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Marinomonas;species:Marinomonas mediterranea; 1.180095118 1.103236035 1.161315861 1.199327331 1.15254494 1.147175699 1.118886539 1.156753734 1.224015395 1.124197687 1.154502598 1.173726609 1.129726236 1.095246046 1.118238792 1.138368317 1.19099948 1.127207189 226092339 fthfs Gemmatimonas aurantiaca T-27 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Gemmatimonadetes;class:Gemmatimonadetes;order:Gemmatimonadales;family:Gemmatimonadaceae;genus:Gemmatimonas;species:Gemmatimonas aurantiaca; 0.819146209 0.851259649 0.815570655 0.858937979 0.828712875 0.866346258 359277440 CsoS1_CcmK Synechocystis sp. PCC 6803 substr. PCC-P Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechocystis;species:Synechocystis sp. PCC 6803; 0.981352895 0.942128893 0.967176706 0.975390016 0.979689218 0.983508264 0.993635617 0.971736286 0.98766721 0.987707469 0.982885409 0.961714199 0.912596747 0.924874204 0.948890394 0.909678816 0.994533115 1.006008322 365274512 mdlc Bradyrhizobium sp. ORS 285 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.926233579 0.883771116 0.816815584 0.816961052 0.861352587 0.882328577 0.839159502 0.850592532 0.843125592 0.890842443 0.840463105 0.855360758 0.882153916 0.819045661 0.872658697 0.864569073 0.885311575 0.870728503 365899018 narg Bradyrhizobium sp. STM 3843 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.788759012 0.803214664 0.795888368 0.808473354 0.789712905 0.835916969 0.790208021 0.80822928 0.872320841 0.874842811 0.835816533 0.814177467 0.827150295 86749821 nhh Rhodopseudomonas palustris HaA2 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 0.759981936 0.826496097 395648218 cmci Pseudomonas extremaustralis 14-3 substr. 14-3b Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas extremaustralis; 0.824923888 0.821435898 0.84280706 0.862388984 0.832846429 0.827695918 0.836634366 0.83123375 0.799462402 0.855529536 345870932 FBPase Thiorhodococcus drewsii AZ1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiorhodococcus;species:Thiorhodococcus drewsii; 0.842791427 0.852619529 0.86601254 0.861582932 0.788712023 0.826680535 0.887371169 0.842626896 0.966296993 0.87454651 0.885750552 0.820968107 0.916153069 0.915050697 325921572 cysI Xanthomonas gardneri ATCC 19865 Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas gardneri; 1.113604899 1.118550939 1.076378995 1.100268685 1.118241701 1.122259574 1.092050717 1.081789233 1.082408672 1.082386235 1.079847704 1.09641646 1.070046516 1.061722293 1.09037487 1.090310255 1.112146677 1.098866486 330723201 dsrB Desulfovibrio sp. P1 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 0.844255867 0.859507018 0.864782236 0.827606675 0.855187385 0.802919562 0.814775679 0.820684571 0.876520513 0.86688831 251795356 xylanase Paenibacillus sp. JDR-2 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 0.8943663 0.883211931 0.833396863 0.879252084 0.888281402 0.895437853 1.120997791 0.895024987 0.851806023 0.915911719 0.897030944 0.901892087 0.873607283 0.857069134 0.868090946 0.83476852 0.863358269 0.845494858 189193891 pchcf Pyrenophora tritici-repentis Pt-1C-BFP Organic Remediation Aromatics BTEX and related aromatics superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 0.860011446 0.863537445 0.803860194 0.875565 0.874433258 0.848506212 0.861364047 0.835758855 0.855346377 0.874454001 0.820775331 0.834345701 0.800856179 0.852609302 0.869854278 11226475 amyA Bacillus sp. Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 0.875507191 0.929790716 374984292 bphF1 Streptomyces bingchenggensis BCW-1 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces bingchenggensis; 1.217285453 1.185553536 1.170096387 1.17809108 1.117841031 1.17691592 1.101797411 1.14871706 1.192102892 1.158354825 1.147598616 1.143084755 1.123099814 1.142642344 1.137382538 1.159679351 1.196597323 1.181297533 83949534 ppx Roseovarius nubinhibens ISM Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius;species:Roseovarius nubinhibens; 0.796727422 0.845067996 0.861658973 0.845455759 0.900667366 0.875399156 0.914444543 0.910647663 0.866382334 0.848398447 0.877478824 0.857105555 262338554 acetylglucosaminidase Vibrio sp. Ex25 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 1.355179566 1.321279685 1.340564721 1.350585062 1.320006989 1.304570753 1.313654712 1.335824699 1.327804683 1.31119769 1.304797231 1.340918929 1.295048674 1.260037694 1.275001301 1.303645084 1.331520238 1.276356985 26278890 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.814808967 0.835684708 0.828537173 0.824511015 0.863576952 299524648 exaa(moxf) Hyphomicrobium denitrificans ATCC 51888 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium;species:Hyphomicrobium denitrificans; 1.098176451 1.089787738 1.100741486 1.115192653 1.078193039 1.132017252 1.110147017 1.097217938 1.101358209 1.093964819 1.091365411 1.110557043 1.052351008 1.080493334 1.03434433 1.085890458 1.093156301 1.108717957 225194107 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.94309429 0.921936366 0.857813373 0.819834383 0.833965376 0.865146063 0.865601054 0.823093442 0.901874102 0.832717702 0.881224567 0.82093864 0.816624516 0.820100856 0.933174516 0.903509356 58041829 xlnd Klebsiella pneumoniae Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella; 1.127251194 1.091000676 1.097018681 1.109064744 1.122273335 1.124483402 1.088609043 1.095775392 1.107417789 1.079237289 1.073317182 1.065133588 1.077877129 1.116355458 1.097615155 256009273 tehb Acidimicrobium ferrooxidans DSM 10331 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Acidimicrobiales;family:Acidimicrobiaceae;genus:Acidimicrobium;species:Acidimicrobium ferrooxidans; 0.959986867 0.885111565 0.91433187 0.91877968 0.831121474 0.911152915 0.84413011 0.886202531 0.904393786 0.854987752 0.931915673 0.905527946 0.896026449 0.888881743 0.834958121 0.892243241 0.927183835 0.844314453 118016698 phn Serratia proteamaculans 568 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia proteamaculans; 0.981094458 0.981994431 0.974009386 0.977710442 0.98059931 0.988846173 0.941408238 0.935100861 0.942942921 0.962014899 0.957422466 0.953404067 0.979536738 0.92906986 0.973592065 0.9427135 0.974615607 1.001091492 373524451 acc_arch Metallosphaera yellowstonensis MK1 Carbon Cycling Carbon fixation 3-hydroxypropionate/4-hydroxybutyrate cycle superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Sulfolobales;family:Sulfolobaceae;genus:Metallosphaera;species:Metallosphaera yellowstonensis; 1.09206493 1.049440969 1.058779338 1.090844604 1.027918357 1.077233065 0.978169287 1.050053368 1.066616726 1.038216234 1.043172375 1.059746233 1.022284871 1.026458783 1.014158759 1.037604777 1.085720817 1.01967588 70733069 pgk Pseudomonas fluorescens Pf-5 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas protegens; 1.004767501 0.951903413 0.997821138 0.976788823 0.902694772 0.937691906 0.912995234 0.947756498 0.99272889 0.965371175 0.962392222 0.985629602 0.911281328 0.870914545 0.890416428 0.888288738 0.980001254 0.965059089 365418589 urec Bradyrhizobium sp. STM 3843 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.946716057 0.829885411 0.906826123 0.837752442 0.924689146 0.94343859 0.900476072 0.842756063 0.859706609 0.9535496 0.992488786 0.904869334 0.946179746 0.925125873 0.97033258 0.952024363 0.965597531 0.947023128 328804230 terc Aeromonas veronii B565 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas veronii; 0.982395861 0.981945484 0.981494535 1.005010464 1.032298541 0.993221563 0.992587877 1.003292723 0.972337786 0.977699128 0.972475768 1.004519839 0.961396956 0.922668678 0.891282193 0.92405567 0.990572088 0.95317162 330468452 endoglucanase Verrucosispora maris AB-18-032 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Verrucosispora;species:Verrucosispora maris; 0.788470361 0.787930963 330906871 rgl Pyrenophora teres f. teres 0-1 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora teres; 0.828777829 0.864020736 0.821072554 0.919225293 0.896491487 0.892801231 0.856473418 0.852917058 0.82765295 0.87811245 0.85514676 0.912761194 0.825360019 0.898436905 0.859748891 0.870689427 0.90098961 0.915595343 363993685 bphd Mycobacterium abscessus subsp. bolletii BD Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium abscessus; 1.026521594 0.987438974 1.003925068 1.002272923 1.049614956 1.008482607 1.020827272 1.011149945 0.986921753 1.020743664 1.03729809 1.008122184 0.9680008 0.943038076 0.939481215 0.92694892 1.038952013 0.984967622 59894160 hsp90_Stramenopiles Pythium graminicola Other Phylogenetic NA superkingdom:Eukaryota;order:Pythiales;family:Pythiaceae;genus:Pythium; 0.938562038 0.931630076 0.908147245 0.934852433 0.91436416 0.954290012 0.925519783 0.904553206 0.94529945 0.92324449 1.031674804 1.027213793 0.890144029 0.967681131 0.8809038 0.895271988 0.910175066 0.898006348 258557205 poba Nakamurella multipartita DSM 44233 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nakamurellaceae;genus:Nakamurella;species:Nakamurella multipartita; 0.994290588 1.02530799 0.9488155 0.989181352 0.969121389 1.014763679 0.908728338 0.876657849 0.89980542 1.003004799 0.96361332 0.963569459 0.91670971 0.991487028 0.895020402 0.95595395 1.005983728 1.016921639 50837707 exoglucanase Malbranchea cinnamomea Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;genus:Malbranchea; 0.969221689 0.845171792 0.985060567 0.871351227 0.88490146 0.897272046 0.820003406 0.963179085 0.850138311 0.872257418 0.848296767 0.909977337 0.840125863 0.855727197 0.863591127 0.87152795 0.900109585 0.947096991 307772275 GAPDH_Calvin Roseibium sp. TrichSKD4 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseibium; 0.974782149 0.956773784 0.996681444 1.001694721 0.951403715 0.951509601 0.930342887 0.916091281 0.997783762 1.005614948 1.001203427 0.993147666 0.953224411 0.904771855 0.909557855 0.916837203 0.970130814 0.926986221 325676599 ppx Rhodococcus equi ATCC 33707 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus equi; 1.074101122 1.012887841 1.043014409 1.002981164 1.010639877 0.989152523 0.948335691 0.953674941 1.01122646 1.033994919 1.027940696 1.018422149 1.026025011 0.993175105 0.995019177 0.984639363 1.073319496 1.016489923 340557428 TIM Acidithiobacillus caldus SM-1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus caldus; 1.10936632 1.10784293 1.105594981 1.102543522 1.119010288 1.133037056 1.111369552 1.13508677 1.127788226 1.075776574 1.093416306 1.113738898 1.095320761 1.069423438 1.079996981 1.102760063 1.133733177 1.143274986 227347649 gdh Corynebacterium pseudogenitalium ATCC 33035 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium pseudogenitalium; 0.760025807 0.785265866 0.801673395 0.803880517 0.830429573 255519325 nirk proteobacterium D198b Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria; 0.805893571 0.811302567 0.848010919 0.81658683 0.823787655 0.863494917 0.85984699 0.82704451 0.842585773 0.822908504 0.816120657 302389122 CsoS1_CcmK Thermosediminibacter oceani DSM 16646 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacterales Family III. Incertae Sedis;genus:Thermosediminibacter;species:Thermosediminibacter oceani; 1.321366088 1.290912434 1.314206261 1.333280188 1.31417488 1.342386165 1.319077525 1.334048899 1.337517066 1.311587267 1.315344481 1.349952157 1.296435515 1.281813319 1.295268501 1.309486969 1.341675346 1.286350907 91710057 exaa(moxf) Methylobacillus flagellatus KT Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Methylophilales;family:Methylophilaceae;genus:Methylobacillus;species:Methylobacillus flagellatus; 0.808753764 0.83946144 0.787142326 0.856520691 0.827194374 0.854082575 0.770172061 0.791032779 0.85399111 0.817251833 0.819765543 0.830907658 260574362 GAPDH_Calvin Rhodobacter sp. SW2 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter; 1.130105968 1.070229395 1.034088391 1.046708867 0.989755492 1.036418744 0.999976587 1.021773464 1.039077005 1.060329309 0.999598044 1.009809179 0.975069684 1.020348986 0.960891142 1.011420468 1.110315881 1.080157039 322419743 dsra Geobacter sp. M18 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 0.803245879 0.823006453 0.804812235 0.811203691 0.79494565 0.807367354 0.821419799 0.827933023 0.798344612 0.806166552 0.828353948 0.815481081 359777767 cellobiase Arthrobacter globiformis NBRC 12137 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter globiformis; 0.909086309 0.921998972 0.968541574 0.976122963 0.957711872 0.939210154 0.871144469 0.924737415 0.919355541 0.943582787 0.889596161 0.936750902 0.885651258 0.934726104 0.845398009 0.883569046 0.926219726 0.966351704 337277901 dehh Ramlibacter tataouinensis TTB310 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Ramlibacter;species:Ramlibacter tataouinensis; 1.394195881 1.407287031 1.362474866 1.375038484 1.332604904 1.338560959 1.306497606 1.348005821 1.347101721 1.335694612 1.341260758 1.384419446 1.315455615 1.311595373 1.31007237 1.325000131 1.348630548 1.316626274 214033704 amyA Thermococcus sp. AM4 Carbon Cycling Carbon degradation Starch superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Thermococcus; 0.934948396 0.960157923 0.959276983 0.983326311 0.961392191 0.955947809 0.906579761 0.939788108 0.917136109 0.953691528 0.889171851 0.933217613 0.939483548 0.897092432 0.891996755 0.931301494 0.962000091 0.948689446 319793159 ppx Variovorax paradoxus EPS Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 1.121464392 1.109684682 1.119741829 1.170255233 1.119043603 1.127621566 1.13388756 1.151235946 1.147360801 1.110572104 1.135063168 1.156637039 1.126507528 1.076578426 1.147297384 1.126541237 1.157528031 1.102132361 53987084 urec Pseudomonas sp. T02-1 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.946384116 0.921710837 0.930652776 1.00796773 0.975188696 0.972168925 0.964618738 0.953011491 0.916103869 0.935675137 0.951404086 0.952570995 0.914330937 0.916054432 0.869394539 0.949872989 0.973226335 0.974458078 261188755 protease_serine_fungi Ajellomyces dermatitidis SLH14081 Carbon Cycling Carbon degradation protein superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces dermatitidis; 0.838242794 0.94598675 0.895415022 0.904145598 0.858489506 0.867499739 0.851646593 0.861061554 0.900759414 0.932601728 0.831470707 0.881282836 0.85197313 0.89216184 0.829525402 0.86374963 0.929240242 0.909321092 410370810 catb Klebsiella oxytoca M5al Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella oxytoca; 0.837199439 0.824897423 0.819199245 0.805680357 126729207 atzb Sagittula stellata E-37 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 1.164903627 1.142726886 1.135623665 1.108388237 1.088437279 1.149286079 1.074538459 1.092336659 1.119620377 1.137155001 1.129344455 1.139112923 1.123720949 1.135718532 1.120433787 1.114308778 1.142112613 1.175717271 356641273 mdh_DiC4HB Pyrobaculum sp. 1860 Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum; 0.928953595 0.932120884 0.933068014 0.953427453 0.931573185 0.889297858 0.918690616 0.901230155 0.898268431 0.899820193 0.903027761 0.906592124 0.837708149 0.862256894 0.87760659 0.942790223 0.96759001 126726253 urec Rhodobacterales bacterium HTCC2150 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 0.874510596 0.795475103 0.884503966 0.81715157 0.932643258 1.216302875 0.80496444 0.816308364 0.853136933 359732057 arsc Rhodococcus pyridinivorans AK37 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus pyridinivorans; 0.891224174 0.851237986 0.898224341 0.921452491 0.958686451 0.847812267 0.917843739 0.839960828 0.845151352 0.849235552 0.862202303 0.857147453 292560771 aoxb uncultured bacterium Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 0.834758993 0.926236565 0.854773193 0.858101404 0.853299817 0.907045407 0.825930149 0.838589713 0.769968155 0.873349781 0.85434614 0.819749459 0.91852566 0.929206843 0.878221558 0.899483673 0.940516036 159045339 fccab Dinoroseobacter shibae DFL 12 Sulfur Sulfide Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 0.811972118 0.838509346 0.827970039 0.798890583 363422363 cutinase Rhodococcus pyridinivorans AK37 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus pyridinivorans; 1.298574299 1.27108504 1.268481497 1.25982024 1.259858143 1.308910468 1.26296331 1.265461585 1.250169495 1.237170191 1.24282037 1.240420593 1.239143859 1.230678235 1.217446027 1.229092132 1.264224206 1.248482991 110599524 linb Geobacter sp. FRC-32 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 0.850054518 0.796759852 0.810407144 0.9308608 0.890854226 0.853807908 0.87723644 0.87095577 0.899488086 0.857930365 0.844944822 0.909456674 0.840561112 0.871545825 0.805095937 0.809991355 0.839428597 0.871099892 147886242 phenol_oxidase uncultured bacterium Carbon Cycling Carbon degradation Lignin superkingdom:Bacteria; 0.991789347 0.976850151 0.982933175 0.954713011 1.000470272 0.993535846 0.985361686 0.979300076 0.957209789 0.968010847 0.980609305 0.99700463 0.996135933 0.977392295 0.946371459 0.965163852 0.966363898 0.990638044 300390426 fthfs uncultured bacterium Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria; 1.194802284 1.145233783 1.134988592 1.166503415 1.152017825 1.143105022 1.112060652 1.106428886 1.130606521 1.086808527 1.106066718 1.165309845 1.096602387 1.066419537 1.105214112 1.08584615 1.160468742 1.113863164 237500435 alginase Tolumonas auensis DSM 9187 Carbon Cycling Carbon degradation Alginate superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Tolumonas;species:Tolumonas auensis; 0.988132418 1.011763972 1.028890547 1.017866905 1.050665761 1.016561603 1.030290201 1.018144172 1.034312116 1.068275852 0.993018027 1.058106702 1.022001579 1.026977463 1.002613328 0.964055678 0.976888919 1.043843069 73762892 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.104355983 1.113104103 1.044136635 1.087870604 1.066834995 1.118898803 1.059022418 1.081083888 1.054450348 1.060612374 1.038670778 1.086775042 1.022670384 1.046088471 0.958971395 1.026713971 1.078810272 1.088990793 116060636 Sir Ostreococcus tauri Sulfur sulfite reduction NA superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Mamiellophyceae;order:Mamiellales;genus:Ostreococcus; 0.8996287 0.977642402 0.897169644 0.907660684 0.878046676 0.944253183 0.829061873 0.842390772 0.803776794 0.885939 0.842485655 0.841384696 0.871797392 0.885164286 0.848742651 0.865484797 0.896047903 0.942071326 13277513 endoglucanase Clavibacter michiganensis subsp. sepedonicus Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Clavibacter;species:Clavibacter michiganensis; 0.842332803 0.911157148 0.989298831 0.931813851 0.796452011 0.839537026 0.845975873 0.882279765 0.846364039 0.866828365 0.855496708 0.812648169 0.840704699 0.877214895 0.831422748 1.040538387 325660443 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.666450646 1.6065843 1.633238011 1.632711755 1.630437472 1.658341441 1.623546826 1.646372994 1.616525273 1.61001575 1.6244501 1.630883389 1.595365768 1.570200068 1.637597339 1.618732802 1.611590428 1.576482618 256393948 acetylglucosaminidase Catenulispora acidiphila DSM 44928 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 1.280385522 1.317364376 1.269407293 1.291131562 1.292090404 1.294658917 1.266945406 1.25156534 1.260362199 1.247823125 1.302938857 1.282691275 1.28064524 1.214442954 1.247538253 1.248503503 1.289224841 1.260427086 162451336 amyA Sorangium cellulosum 'So ce 56' Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 0.992148824 1.019888802 1.004678532 0.991385678 0.986142756 1.01633255 0.955412117 0.948934418 0.987911963 0.95102505 0.957220452 0.939394217 0.995047129 0.942077523 0.927705287 0.947709024 1.010215955 0.978021341 71841644 narg Pseudomonas stutzeri Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 1.109980369 1.158625504 1.101727633 1.102397747 1.092059435 1.070102092 1.069973164 1.0936047 1.054703682 1.063547632 1.0465285 1.094263972 1.07636557 1.037055826 1.057317332 1.072018811 1.090160841 1.063091575 170768316 tehb Escherichia albertii TW07627 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia albertii; 0.954902913 0.941774814 0.957265733 1.000300852 0.974942191 0.972408775 0.985678784 1.045485701 0.945020298 0.978827232 0.967215002 1.006924606 0.910727341 0.952385957 0.961037144 0.978591905 0.910782417 0.97557885 241110574 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.008611711 1.018305729 0.966682872 0.975180116 1.021936206 0.94958744 0.924089334 0.936642346 0.979222158 0.964290141 0.986860437 0.961770363 0.972656204 0.897758419 0.994819124 0.992175507 1.041006913 15602407 amyA Pasteurella multocida subsp. multocida str. Pm70 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Pasteurella;species:Pasteurella multocida; 1.180462836 0.988869078 1.055547291 1.183442424 1.060701907 0.975953358 1.011191176 1.086345562 1.04369076 1.007903475 1.010897682 1.132002599 0.981102769 1.003915371 0.99892454 1.003991585 1.029845981 1.085093398 282896436 CsoS1_CcmK Raphidiopsis brookii D9 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Raphidiopsis;species:Raphidiopsis brookii; 0.977162929 0.990269517 0.945008414 0.952398893 0.940272814 0.957551417 0.8998659 0.935278623 0.950152277 0.957772846 0.927647753 0.938635277 0.917560611 0.939524818 0.961976379 0.901574336 1.010988557 1.006880722 365891626 tktA Bradyrhizobium sp. STM 3809 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 1.029387223 0.97178918 0.901818312 0.950159288 0.900397383 0.968754903 0.860146918 0.911212098 0.989346394 0.93917405 0.858151887 0.934468143 0.91332344 0.919675853 0.933264497 0.892323818 0.970114818 1.017789489 330820405 nfsa_2 Burkholderia gladioli BSR3 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia gladioli; 0.889317736 0.925784456 0.867353218 0.91061169 0.888167271 0.895906508 0.889481396 0.882156363 0.879031684 0.900233244 0.891226973 0.907747988 0.85792277 0.884520308 0.834183501 0.81289669 0.867826664 0.910385252 334702901 amyA Aeromonas caviae Ae398 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas caviae; 0.888846545 0.925514492 0.876095471 0.885636551 0.871337294 0.907963848 0.911645159 0.898557239 0.891210221 0.903632188 0.807138469 0.904895191 0.836376713 0.901656463 0.793896741 0.819317296 0.861661958 0.915738639 356660537 cysJ Rhodococcus opacus PD630 Sulfur Reduction NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus opacus; 1.07824137 1.045744403 0.981441868 1.060082016 1.033024131 1.062482681 1.055623953 1.049864798 1.003884188 0.998883956 0.989575845 1.022237864 0.958285603 0.940793574 0.954480135 0.969622298 1.020860587 1.073127392 145596737 mer Salinispora tropica CNB-440 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora tropica; 1.030234925 1.002566101 1.03864014 0.992198379 1.042015946 1.043420238 1.050316628 1.040258773 1.017612235 1.046559222 1.034482838 0.985612202 0.978839742 0.96639873 0.900217437 0.916892571 1.009520605 1.011767595 289691664 amyA Mycobacterium tuberculosis T92 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tuberculosis; 0.776926308 0.901041165 0.832893088 0.818021775 0.843376478 0.84110798 0.841707275 0.866870624 0.846334249 0.86404692 0.829990417 168197673 nfsa_2 Methylobacterium sp. 4-46 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 0.849313889 0.81227665 0.815189524 0.875475198 0.913648154 0.82055123 0.807985732 0.835607103 0.810056255 0.817487153 0.820583763 0.855128971 0.83921072 302389150 arsc Thermosediminibacter oceani DSM 16646 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacterales Family III. Incertae Sedis;genus:Thermosediminibacter;species:Thermosediminibacter oceani; 0.977724058 0.95878513 0.941599449 0.947042082 0.900003003 0.954094799 0.943667095 0.94326432 0.961935825 0.987124707 0.944661175 0.95570985 0.909546779 0.915696184 0.903734901 0.936285093 0.993267021 1.012392191 392967439 xyla Fibrisoma limi BUZ 3 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Fibrisoma;species:Fibrisoma limi; 1.012657047 1.022636182 0.970896462 1.015431871 1.008319259 1.051915477 0.994148465 1.010121094 0.998981052 1.023175144 0.983473337 1.003795246 1.010058463 0.999909531 0.996932687 1.013264198 1.035958071 1.022795207 29652626 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.908521478 0.895564521 0.938478743 0.896883866 0.905260603 0.95288928 0.887382787 0.898683849 0.881054506 0.951221091 0.942461922 0.906747856 0.838106517 0.895314508 0.867819738 0.868190243 0.919488252 0.935024807 126434046 arsc Mycobacterium sp. JLS Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 1.252903337 1.239148765 1.24878587 1.243151826 1.233477271 1.27719839 1.213859232 1.231592347 1.217325223 1.239212278 1.239052651 1.207957748 1.218169962 1.189853595 1.177512298 1.205277773 1.266442072 1.213856606 77383659 atzb Pseudomonas fluorescens PfO-1 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 0.925291274 0.964315958 0.910576836 0.932947994 0.933730324 0.917404892 0.934241667 0.930844427 0.946891844 0.936180906 0.922572796 0.948566334 0.905484996 0.882375453 0.885683858 0.858426307 0.930872248 225572643 acetylglucosaminidase Blautia hydrogenotrophica DSM 10507 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Blautia;species:Blautia hydrogenotrophica; 0.912221053 0.916193266 0.832328203 0.937963331 0.901697545 0.811289925 0.874147414 0.900699291 0.908528062 0.892597749 0.859791402 0.939674441 0.889691007 0.8520568 0.835427256 0.88079252 0.86598992 300654650 FBPase Hydrogenophilus thermoluteolus Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Hydrogenophilus; 0.970917238 0.963778745 0.948369184 0.991851651 0.942284533 0.951653854 0.947211203 0.947574362 0.958050892 0.955153657 0.924963955 0.957697158 0.938622677 0.925067324 0.945330158 0.947540409 0.978815682 0.957343412 345134858 badh Streptomyces sp. SN-593 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 0.988865022 0.987748584 1.02937317 0.994560935 1.040354226 1.035063817 1.032770121 1.032957924 1.025644135 1.019202059 1.022507509 1.023749788 0.994760025 0.964258612 0.930673924 0.947834419 0.998125162 1.045354891 116804618 nasa uncultured prokaryote Nitrogen Assimilatory N reduction NA 1.018181582 1.007061383 1.00823227 0.999687956 0.959549575 0.983809531 0.947411987 0.982184396 1.006616924 1.018624728 0.95199343 0.976271073 0.995235325 0.985617142 0.908702227 0.955967694 1.012951792 1.017697879 94424356 RgaE Sphingomonas sp. SKA58 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 0.835724546 0.824638407 0.853482998 0.871360045 0.847894149 0.829315287 0.840125181 0.85223833 0.868404679 0.870603184 268317366 amyA Rhodothermus marinus DSM 4252 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;order:Bacteroidetes Order II. Incertae sedis;family:Rhodothermaceae;genus:Rhodothermus;species:Rhodothermus marinus; 1.07727052 1.104662006 1.073930678 1.096683933 1.102232314 1.098599397 1.074847702 1.078482271 1.05728178 1.078987912 1.081025389 1.089696432 1.084434006 1.073399434 1.080382071 1.051484273 1.085384204 1.050341574 344039207 pectinase (pectate_lyase) Streptomyces violaceusniger Tu 4113 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces violaceusniger; 1.031291622 1.039183942 1.048521306 1.027339486 1.072691075 1.070960045 1.06214466 1.082988937 1.019589493 1.020076669 1.023328115 1.030339747 1.0009579 0.996854223 0.992921113 0.997352048 1.050110489 1.00955072 83592134 nifh Rhodospirillum rubrum ATCC 11170 Nitrogen Nitrogen fixation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum rubrum; 1.100571386 1.118119931 1.083896703 1.066683146 1.07576052 1.103603293 1.067900848 1.039100494 1.086125717 1.103830127 1.091199141 1.09114201 1.039814794 1.044428525 1.020215351 1.059872 1.079124624 1.082879242 407801768 alkk Alcanivorax sp. W11-5 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax;species:Alcanivorax pacificus; 1.055467596 1.007661364 1.029277136 1.011538163 1.011897158 1.041913003 0.968245402 0.989904196 1.010327741 1.01237308 0.980140362 1.012593215 0.953147676 0.953891876 0.919174652 0.977185448 1.063658093 1.043180416 315600199 tktA Rhodopseudomonas palustris DX-1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 1.109023286 1.081583622 1.058531752 1.07282066 1.09621399 1.106665359 1.118514643 1.075871933 1.092150146 1.060854736 1.077653261 1.088858594 1.055620635 1.046936361 0.996274296 1.050929507 1.097270047 1.075786996 60476245 dsrB uncultured bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.12778471 1.105609852 1.099808224 1.083056717 1.097213566 1.110117646 1.100115921 1.107105442 1.10252599 1.083090842 1.01697233 1.04887659 1.015738326 1.031607491 1.004610184 1.00407729 1.084993706 1.103558302 298290657 trze Starkeya novella DSM 506 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Starkeya;species:Starkeya novella; 1.030028673 1.13902001 1.029012597 1.049678866 1.062711671 1.063345856 1.06588911 1.005318108 0.975737342 1.125704187 1.042321764 1.022643047 1.067466039 1.10938703 0.981454879 1.030226099 1.06703431 1.098308035 384148072 chitinase Amycolatopsis mediterranei S699 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 0.992527949 0.963849798 0.957941251 0.983086887 0.881069602 0.978322781 0.906070972 0.923297578 0.985160668 0.958702266 0.926786222 0.923309099 0.907061646 0.904565816 0.884938173 0.902793273 1.013464633 0.978277208 111150342 mhpa Frankia alni ACN14a Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia;species:Frankia alni; 1.19912168 1.197603506 1.162302784 1.170624227 1.107420758 1.193016845 1.106595768 1.157426055 1.176506127 1.157308965 1.118654004 1.15786527 1.092806637 1.12369309 1.078036771 1.112564308 1.1827996 1.200289747 110824271 pcpe Rhodococcus sp. RHA1 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 0.821821361 0.851333035 0.837168057 0.811113948 0.82699035 0.781727355 0.831323818 0.842248454 163839191 amyA Renibacterium salmoninarum ATCC 33209 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Renibacterium;species:Renibacterium salmoninarum; 0.853930186 0.941263868 0.877328407 0.933502018 0.935452642 0.96187589 0.882797055 0.881508333 0.848671427 0.942574367 0.925874303 0.852511267 0.851526683 0.858219123 0.895478167 0.912071252 0.950396343 0.942596549 20278813 nifh uncultured nitrogen-fixing bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.990044343 1.074621032 1.047882384 0.985752668 0.957946747 1.014935362 0.92308091 0.949878777 0.942998596 0.971300611 0.95862117 0.949709905 0.942144527 0.940988473 0.922873888 0.952338994 1.002802918 1.001954916 154174472 sucD Campylobacter curvus 525.92 Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter curvus; 1.107551518 1.051393771 1.088599476 1.100293175 1.020082954 1.086749289 1.041882542 1.084759672 1.074472199 1.064555757 1.048400532 1.074244678 1.031141553 1.036998738 1.063494968 1.068254779 1.10567818 1.099723282 47078054 xylxy Pseudomonas sp. ST41 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.797041247 0.8765148 0.895392785 0.904342955 0.8223018 0.800622146 0.811456215 0.787403653 0.807148559 0.844459231 0.839756072 0.834250232 0.842466533 0.829814938 0.83299401 0.881823026 0.837685139 99030601 ppk uncultured bacterium Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria; 0.768761265 0.805905726 349782096 aps_apra Thioalkalivibrio thiocyanoxidans ARh 4 Sulfur adenylylsulfate reductase NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio;species:Thioalkalivibrio thiocyanoxidans; 0.967117432 0.989243365 0.905769491 0.902032213 0.835294812 0.885004395 0.863319749 0.923778836 0.89118601 0.872752915 0.8311395 0.876082983 0.847604061 0.882714773 0.86822278 254510766 FBPase Rhodobacteraceae bacterium KLH11 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 1.106155933 1.082230488 1.110761226 1.12986676 1.13635545 1.130951896 1.14162587 1.114287768 1.122192356 1.097929041 1.12007586 1.120482896 1.094466099 1.06218162 1.074560631 1.061188766 1.097774194 1.088331161 13446757 nbzb Pseudomonas putida Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 1.088833024 1.010455681 1.01911865 1.014629543 1.020475451 1.021849157 1.049961879 1.035851159 1.039166897 1.008252003 1.002033144 1.016443545 0.961354354 0.966386328 0.974395692 0.998217704 1.041811201 1.053052203 164455912 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 1.174964676 1.222601444 1.165723997 1.158115542 1.170678976 1.188545875 1.150247448 1.16752695 1.148797182 1.164187159 1.175972311 1.17855232 1.143665604 1.16639444 1.168533426 1.144155604 1.189026524 1.175403981 27314546 merb Staphylococcus epidermidis ATCC 12228 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Staphylococcus;species:Staphylococcus epidermidis; 1.0968669 1.083064207 1.059772233 1.066671318 1.02551428 1.06743361 1.012742447 1.041316412 1.071421378 1.042911175 1.078634961 1.047910379 1.033265986 1.048929934 1.045775113 1.067043883 1.092940428 1.079856063 254465391 GAPDH_Calvin Rhodobacterales bacterium Y4I Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 1.283616098 1.23705204 1.254390419 1.235106 1.237814213 1.247970397 1.237261305 1.214381033 1.230639062 1.226724862 1.208258518 1.242466049 1.211906063 1.175438452 1.211348926 1.186281704 1.248399728 1.224278121 374574603 pcpe Bradyrhizobium sp. WSM471 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.840660326 0.750101594 209401718 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.001204105 0.974357649 0.944514883 0.986452461 0.928137317 0.964936887 0.931147688 0.945502494 1.000821904 0.952661641 0.945355012 0.98481586 0.918420709 0.946979226 0.883443646 0.967160834 1.000848049 0.975550555 383331886 amyA Mycobacterium phlei RIVM601174 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium phlei; 0.838280063 0.905546008 0.836290272 0.781949461 0.816009862 0.810503968 0.918192662 0.825244797 0.821321578 84704987 mer Parvularcula bermudensis HTCC2503 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Parvularculales;family:Parvularculaceae;genus:Parvularcula;species:Parvularcula bermudensis; 0.936416915 0.914478564 1.002998609 1.051495355 0.979048595 0.994044833 0.957509471 1.006697498 0.989690417 1.062194455 0.953539757 0.989736777 1.019886783 0.969330475 0.951742606 0.966515411 0.943898827 0.965141946 374709706 amyA Sporolactobacillus inulinus CASD Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Sporolactobacillaceae;genus:Sporolactobacillus;species:Sporolactobacillus inulinus; 0.958275494 0.919090047 0.941848862 0.97116354 0.938646331 0.90963607 0.92314131 0.929232875 0.937327373 0.910521341 0.935506518 0.939825038 0.876148047 0.866746208 0.864635905 0.876446214 0.933757821 0.944427743 317464335 acetylglucosaminidase Pseudoxanthomonas suwonensis 11-1 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Pseudoxanthomonas;species:Pseudoxanthomonas suwonensis; 1.096620615 1.088193018 1.022280336 1.0349737 0.994296323 1.058338515 0.985628711 1.00625392 1.075628882 1.036275992 1.031691867 1.009662584 1.014639861 1.014650381 1.00293383 1.018673672 1.069544103 1.05623075 7573260 poba Sphingomonas sp. LB126 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 0.996153751 1.015863706 0.902001014 0.855456917 0.96020764 0.995216996 0.851366153 0.892205838 0.888782421 0.972123732 0.930794503 0.912719556 0.942825543 0.964624417 0.860338625 0.928689133 0.920581038 0.989208963 308433870 amyA Dermacoccus sp. Ellin185 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dermacoccaceae;genus:Dermacoccus; 0.851706568 0.835942883 0.841522134 0.85568635 0.845166489 0.822114485 0.877922614 0.872678476 0.896039601 0.823454321 0.82268677 0.869856965 302688435 rgh Schizophyllum commune H4-8 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 0.969382033 0.997581078 0.925537724 0.982151391 0.939063973 0.976247488 0.927147076 0.953239191 0.966468108 0.93820224 0.922193666 0.914622227 0.940109962 0.910859427 0.891718573 0.931043038 0.955879839 0.967637677 296847148 chitinase Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Nocardiopsis;species:Nocardiopsis dassonvillei; 1.071659367 1.088796816 1.081019358 1.08348406 1.107563556 1.096284938 1.096590921 1.016222583 1.052488692 1.082491486 1.072654207 1.061435976 1.109982627 1.084190259 1.034117868 1.080601215 1.088728437 1.088267441 374424438 bphc Bradyrhizobium sp. WSM471 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 1.297192162 1.251989716 1.251563421 1.288643629 1.220178975 1.29627179 1.22352826 1.243461342 1.263500909 1.244435358 1.254374238 1.249058646 1.214812628 1.218586583 1.193178804 1.226036133 1.285881298 1.252112484 260221223 vana Curvibacter putative symbiont of Hydra magnipapillata Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Curvibacter; 1.145201328 1.085337653 1.070539595 1.127309366 1.044465553 1.089156703 1.029702078 1.032503999 1.122565202 1.050880545 1.070713152 1.08721969 1.029304276 1.056319092 1.043838163 1.079731586 1.127061507 1.057455009 82791399 alkb uncultured bacterium Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria; 1.114388379 1.116886247 1.1602797 1.135262419 1.134402802 1.155284924 1.109625499 1.118877624 1.127461584 1.126438773 1.089927691 1.140745388 1.110332072 1.107407396 1.118928008 1.107961779 1.14700724 1.136526232 219883075 mannanase Arthrobacter chlorophenolicus A6 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 1.095698625 1.093563326 1.117604874 1.078902221 1.126769891 1.128143031 1.071164333 1.054733001 1.056739832 1.089196843 1.103810207 1.087399268 1.029255505 1.061768353 1.008571994 1.08732861 1.048218683 1.083690943 325536980 cmci Xanthomonas vesicatoria ATCC 35937 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas vesicatoria; 0.956218329 0.914502555 0.96508321 0.97259995 0.869386271 0.957570627 0.849909996 0.933953353 0.988858093 0.955575322 0.921121591 0.945585497 0.923071904 0.904708242 0.849771195 0.897236012 0.98428788 0.930329996 260598199 nasa Cronobacter turicensis Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Cronobacter; 1.083182505 1.108747402 1.085158961 1.120856598 1.082759754 1.099465276 1.104887331 1.106058529 1.107478051 1.096829805 1.091094768 1.107302047 1.068372195 1.047273645 1.073473168 1.084736299 1.079098666 1.080551515 379050837 xylanase Salmonella enterica subsp. houtenae str. ATCC BAA-1581 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 1.173980815 1.129295707 1.110301095 1.150606379 1.098502916 1.133659225 1.099017949 1.103943584 1.137766153 1.089425576 1.091789148 1.112306665 1.083742132 1.076095218 1.060091514 1.102741952 1.152757956 1.079418438 326207412 amyA Novosphingobium nitrogenifigens DSM 19370 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium nitrogenifigens; 0.928486138 0.944676475 0.8963316 0.899797951 0.923957801 0.987306164 0.895921904 0.945744333 0.9510836 0.941806815 0.94371013 0.912404579 0.903918412 0.881434551 0.917122955 0.964585286 0.957527364 0.982020563 60100879 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.832492408 0.918622704 0.828535244 0.874253545 0.816979395 0.796828912 0.797393132 0.870862852 0.83485709 0.845054024 0.84392615 0.789416062 0.796533831 0.81063139 0.824716286 0.799057879 339503753 dmdA Roseobacter litoralis Och 149 Sulfur DMSP degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter litoralis; 1.29127823 1.286930938 1.264209162 1.272396423 1.289945497 1.304451957 1.27167111 1.298615069 1.269738651 1.259503095 1.306714013 1.284072619 1.246976604 1.255684774 1.253602193 1.278506772 1.291084596 1.262249135 350561528 PRI Thioalkalivibrio thiocyanoxidans ARh 4 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio;species:Thioalkalivibrio thiocyanoxidans; 0.799840387 0.803403943 298509782 arra Desulfonatronospira thiodismutans ASO3-1 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfohalobiaceae;genus:Desulfonatronospira;species:Desulfonatronospira thiodismutans; 0.861799332 0.851964744 0.831754882 0.861461882 0.857801515 0.837872644 0.860029349 0.821495495 0.863118795 0.80947114 0.81407602 0.818864925 0.849739035 0.876671009 118164444 cdh Mycobacterium avium 104 Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 0.84328678 0.870865886 0.84285342 0.836549743 0.864196896 0.838710968 0.864450521 0.821528338 0.820837204 0.829016588 292560803 aoxb uncultured bacterium Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 1.185245513 1.141774599 1.138372928 1.179716952 1.167807046 1.146644227 1.180427072 1.186772051 1.184796777 1.184582855 1.173350189 1.167016476 1.141040605 1.135391845 1.088718962 1.123303817 1.162403177 1.18923667 319755744 amyA Deinococcus maricopensis DSM 21211 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus maricopensis; 1.224768385 1.216959111 1.206334533 1.220007417 1.195743655 1.239934452 1.188144387 1.184723449 1.210149336 1.200969744 1.199182623 1.195068129 1.175837865 1.154817419 1.180404451 1.16608699 1.223808799 1.210643987 225021187 terc Corynebacterium matruchotii ATCC 33806 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium matruchotii; 0.814128555 0.824704988 118701991 vana Sphingomonas wittichii RW1 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 1.222036254 1.212568282 1.242697386 1.233380724 1.251799673 1.290480333 1.249001912 1.240430397 1.210405984 1.228041829 1.229335519 1.242163823 1.248219504 1.22367505 1.224890114 1.229589565 1.231328481 1.208634281 170679805 nrfa Escherichia coli SMS-3-5 Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia coli; 0.87577528 0.830081976 0.856209909 0.89859593 0.858875216 0.852029815 0.859368096 0.855364384 0.880052559 0.793272691 0.796557689 0.85314658 0.843142965 0.819520941 0.837844201 0.826289006 0.892833011 0.840124748 11496145 mer Pseudoalteromonas haloplanktis Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas; 0.791725071 0.888584468 0.824620296 0.842275736 0.959314917 0.839141507 305860676 amyA Paenibacillus polymyxa E681 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus polymyxa; 0.863447957 0.856914166 0.865760469 0.871675342 0.906972799 0.821491618 0.892721626 0.843773031 0.855863214 0.838170378 0.877904901 0.833747715 0.82063609 0.849057145 0.86332508 0.799313459 0.838104883 46448231 dsra Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio vulgaris; 0.912831172 0.911496809 0.899500886 0.895415769 0.901926232 0.929479813 0.876810573 0.844359912 0.920644809 0.864754206 0.889287534 0.877851937 0.874275916 0.875943138 0.864492308 0.847430762 0.945091655 0.952018326 146284232 tktA Pseudomonas stutzeri A1501 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 1.211806555 1.190579847 1.17838603 1.161426117 1.107970324 1.17528258 1.096494756 1.122269453 1.165818461 1.178717025 1.143703805 1.133279883 1.109124317 1.137342631 1.085288875 1.123213277 1.202444446 1.204531997 110678778 mer Roseobacter denitrificans OCh 114 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter denitrificans; 0.85725202 0.836119025 0.805749229 0.770413421 0.837482791 0.79308479 0.808372857 0.818200629 0.849174787 0.803433158 145613938 endochitinase Magnaporthe oryzae 70-15 Carbon Cycling Carbon degradation Chitin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 0.849147957 0.88758811 0.899341554 0.915788821 0.838896657 0.848525209 0.887200665 0.841318439 0.881484171 0.931763644 0.932972473 0.899002724 0.855319823 0.869367212 0.797404642 0.868472838 0.846703178 0.868701085 377542729 napa Escherichia hermannii NBRC 105704 Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia hermannii; 0.813858263 0.800326341 0.810686273 0.810616415 0.80484796 0.849718441 0.885728075 0.82468692 0.832969225 0.873123257 158107730 tfda Frankia sp. EAN1pec Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 1.222260184 1.094784907 1.102459882 1.131082746 1.159670379 1.110112582 1.059334421 1.084936032 1.119767976 1.071421571 1.079861686 1.111033689 1.11101044 1.055803425 1.09046014 1.132723274 1.163472794 1.111453805 270508782 tfdb Streptosporangium roseum DSM 43021 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 1.248964208 1.235185472 1.225645115 1.236916251 1.20882276 1.239634027 1.212539648 1.191803117 1.215561005 1.216205742 1.226901111 1.236289491 1.2094858 1.210542667 1.176712087 1.21428273 1.254368666 1.179563628 149143986 mer Roseovarius sp. TM1035 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 1.181001916 1.172036162 1.162612714 1.199329037 1.117335628 1.14352353 1.117936982 1.176653533 1.16657362 1.131089247 1.141744396 1.14128478 1.101758058 1.087768322 1.059500956 1.09827268 1.17643532 1.168749092 170700600 one_ring_23diox Burkholderia ambifaria IOP40-10 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ambifaria; 0.971751927 0.906185972 0.91822657 0.965342759 0.950732306 0.933667413 0.932285908 0.974104305 0.950192901 0.925605346 0.964086549 0.97388947 0.89881188 0.88526303 0.843965046 0.915280449 0.970845228 0.934199184 258593207 hao Candidatus Methylomirabilis oxyfera Nitrogen Nitrification NA superkingdom:Bacteria;genus:Candidatus Methylomirabilis; 0.95764001 1.009635768 0.951688383 0.974272218 0.932199764 1.02399404 0.932476275 0.955182483 0.911402873 0.960358925 0.923115304 0.939362794 0.951437542 0.96715198 0.884357177 0.89789794 0.98608465 0.978343716 157679123 rubisco uncultured bacterium Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria; 0.855929307 0.824948181 0.838301905 0.864507127 0.824470519 0.82356194 0.86227868 0.829444303 0.795508543 0.844912977 0.850583784 145016496 cutinase Magnaporthe grisea 70-15 Carbon Cycling Carbon degradation Cutin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 1.20084831 1.176358021 1.189643669 1.167974106 1.142058721 1.195649423 1.124603743 1.119077043 1.149830462 1.15594826 1.177651354 1.126742199 1.171078905 1.140547631 1.099397217 1.156461785 1.19648536 1.158569077 377571143 catechol_b Gordonia terrae NBRC 100016 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia terrae; 1.277444694 1.219222955 1.180000712 1.231399789 1.173036443 1.19978261 1.166423405 1.185010892 1.222494145 1.189062724 1.164902489 1.168012598 1.204136776 1.159127053 1.104380108 1.167229055 1.227105407 1.194095962 389775390 ppx Rhodanobacter spathiphylli B39 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Rhodanobacter;species:Rhodanobacter spathiphylli; 0.999557186 1.043547427 0.935454389 1.024839953 0.948860412 1.031493858 0.958536581 0.998997264 0.995036097 1.041344897 0.956391568 0.992079407 0.963868501 0.990646855 0.93972726 1.012460506 1.036661725 1.011690445 144901070 napa Magnetospirillum gryphiswaldense MSR-1 Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum gryphiswaldense; 0.911352295 0.939801612 0.901519046 0.951103665 0.903135578 0.93520084 0.827163822 0.851084748 0.928052507 0.884364358 0.870054845 0.879839169 0.865934695 0.854319268 0.839014801 0.836795348 0.9356177 0.906240814 342316542 aoxb uncultured bacterium Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 1.106028105 1.076637109 1.054200387 1.107490459 1.05840871 1.041794609 1.051727175 1.106594966 1.107057144 1.0621969 1.056809345 1.087151984 1.055727421 1.053526025 1.047355123 1.048455236 1.095333213 1.067413825 383337363 pcag Mycobacterium xenopi RIVM700367 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium xenopi; 1.354060362 1.353084247 1.318107513 1.319635886 1.32771255 1.366461359 1.320207697 1.331026401 1.319811888 1.35847401 1.322839439 1.336811675 1.304359116 1.303198585 1.292279533 1.316328579 1.338573398 1.354785355 342821898 TIM Vibrio nigripulchritudo ATCC 27043 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio nigripulchritudo; 0.961538914 0.953603985 0.934025795 0.937388093 0.957883379 0.917700351 0.89632703 0.977974374 0.923832168 0.870931279 0.93247401 0.964739159 0.933801375 0.888482809 0.905065639 0.8935009 0.9283865 0.880223424 73763054 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.25027288 1.22909921 1.211298165 1.209724993 1.198013204 1.229616066 1.184522248 1.184675964 1.203482979 1.215617276 1.213932506 1.218581439 1.17000835 1.161720237 1.129232749 1.185410668 1.227369615 1.237117758 299738641 nagg Coprinopsis cinerea okayama7#130 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 1.192724202 1.190267419 1.186422064 1.179549717 1.207988742 1.16884984 1.191704717 1.175207096 1.172230554 1.193117046 1.210802996 1.169412763 1.145830135 1.190476535 1.14653291 1.16860448 1.156731445 1.181064954 340772520 amyA Propionibacterium acnes SK182B-JCVI Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium;species:Propionibacterium acnes; 0.817205395 0.836528582 0.829569075 0.824286797 0.882204974 0.835573365 254283271 fccab gamma proteobacterium NOR51-B Sulfur Sulfide Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 0.955293669 0.926045243 0.854173003 1.073431617 0.843913989 0.89488908 0.892401215 0.865809288 0.935121629 0.920508142 0.845156891 0.906335028 0.838860515 0.888588244 0.851567363 0.936426651 0.874220707 183173473 linb Mycobacterium marinum M Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium marinum; 0.873848492 0.802397717 0.81291972 0.801050408 0.902604166 0.879488646 0.931031163 0.815351119 0.835248997 0.882117586 0.884433613 0.830107893 0.860523043 0.888992564 0.837774988 0.792291756 0.813127452 114767497 poba Roseovarius sp. HTCC2601 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pelagibaca;species:Pelagibaca bermudensis; 1.126843295 1.077828212 1.114876745 1.146346841 1.096468385 1.072517916 1.089804572 1.130994298 1.1062844 1.049264379 1.042960638 1.130717208 1.068087578 1.043784874 1.035634989 1.079916427 1.142811383 1.111027756 315589612 amyA Intrasporangium calvum DSM 43043 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Intrasporangium;species:Intrasporangium calvum; 0.920169903 0.96040984 0.914568695 0.957147549 0.93656847 0.943913982 0.904804247 0.943879292 0.918275051 0.95398127 0.905151345 0.947993325 0.921624192 0.886494287 0.891525084 0.959290051 0.945041975 0.910995328 298537318 amyA Thermus thermophilus HB8 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus;species:Thermus thermophilus; 0.993587884 0.997463062 0.997502174 1.01490473 0.984017272 0.985663452 1.000199354 1.00761493 0.997250586 0.985705284 0.977394452 0.99229214 0.932888323 0.977971987 0.937056728 0.973892499 0.960388859 0.996211899 70733269 ppk Pseudomonas fluorescens Pf-5 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 1.271716996 1.279368973 1.235439915 1.246454964 1.221169012 1.282249233 1.214985535 1.226005203 1.24927814 1.270050058 1.250814706 1.245672465 1.210512375 1.252817122 1.197865703 1.232290997 1.263782583 1.29540104 282165050 amyA Methanocella paludicola SANAE Carbon Cycling Carbon degradation Starch superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanocellales;family:Methanocellaceae;genus:Methanocella;species:Methanocella paludicola; 0.88581775 0.901055324 0.908683969 0.951570997 0.928682513 0.907010046 0.908161936 0.880199852 0.934143581 0.989498813 0.927435776 0.962205748 0.845324862 0.898902198 0.806072026 0.841598789 0.857020761 0.870139002 188520650 pme Xanthomonas oryzae pv. oryzae PXO99A Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas oryzae; 0.953737803 0.898988391 0.97311652 1.01091575 0.899295542 0.936621953 0.890858345 0.926807071 0.935689363 0.930007515 0.916712344 0.919809636 0.873533399 0.888801381 0.885299521 0.899701508 0.952069273 0.909878851 156740540 cellobiase Roseiflexus castenholzii DSM 13941 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus;species:Roseiflexus castenholzii; 1.079229901 1.11009689 1.074980021 1.117681156 1.098716184 1.103165269 1.050961078 1.080647378 1.07138892 1.044790396 1.060245451 1.09234853 1.062988094 1.029115883 1.072322072 1.032271173 1.087471681 1.067674812 74053796 one_ring_12diox uncultured bacterium Organic Remediation Aromatics Other aromatics superkingdom:Bacteria; 1.027983286 0.999263459 1.068653206 1.044496498 1.005046903 1.066002998 1.020336367 1.012964802 1.037794224 1.020073185 1.047092406 1.014744864 1.011431785 0.959600329 0.960861601 0.973668681 1.100985971 1.006094662 237684609 aln Teredinibacter turnerae T7901 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;genus:Teredinibacter;species:Teredinibacter turnerae; 0.959258547 1.007412094 0.928967463 0.981562371 0.936455583 0.970942678 0.921974277 0.928116998 0.913923599 0.953085978 0.918801175 0.935207347 0.930219934 0.938782165 0.911663417 0.942896929 0.962375137 0.963187373 239738518 nitrilase Alcaligenes sp. ECU0401 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Alcaligenes; 0.796865321 0.862100765 0.814959712 0.8090127 0.774341441 0.839483583 0.82091497 46307852 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.846607247 0.877283218 0.876520947 0.836614302 0.874436459 0.804025074 0.858560083 0.81998278 0.852658318 0.802816722 0.857018282 111073751 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 0.897907653 0.79333189 0.870210418 0.930919887 0.881228677 0.833196701 0.816258872 0.916921626 0.891195626 0.85720541 0.838650349 0.836246289 0.801516715 0.806562422 0.916846066 0.860829068 282584231 fthfs Pyramidobacter piscolens W5455 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Synergistetes;class:Synergistia;order:Synergistales;family:Synergistaceae;genus:Pyramidobacter;species:Pyramidobacter piscolens; 1.0754855 1.073649435 1.056056394 1.034535834 1.08245819 1.101952791 1.083606889 1.050277953 1.053928468 1.093186967 1.077323202 1.049764812 1.041723943 1.041635592 1.023683256 1.053362126 1.072271746 1.078845484 115375191 endochitinase Stigmatella aurantiaca DW4/3-1 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 1.203199391 1.148931757 1.194616964 1.278725177 1.22540978 1.247301542 1.193321694 1.264613004 1.195088968 1.178512135 1.182018504 1.236146304 1.147460518 1.14354384 1.132153739 1.16583887 1.164651877 1.122772368 338974097 ppx Bradyrhizobiaceae bacterium SG-6C Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae; 0.940007275 0.942488479 0.901581044 0.926075061 0.904530713 0.920587477 0.932343121 0.919553197 0.941087272 0.915423711 0.914342491 0.916913054 0.913278686 0.905520313 0.9050847 0.902459995 0.940470076 0.879416098 336025336 phn Mesorhizobium opportunistum WSM2075 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium opportunistum; 1.019088588 1.076785695 1.067344003 1.040730902 1.062732036 1.118199773 0.997495896 0.965971646 0.997892919 1.018996035 0.990146837 1.02214979 1.027524982 1.038935415 1.007038653 1.042088647 1.070979565 1.063076162 90655549 ccmL uncultured marine type-A Synechococcus GOM 4N23 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 0.89776445 0.899267573 0.876422859 0.899268466 0.797121137 0.892082256 0.848988833 0.891717282 0.88109596 0.904106953 0.793350461 0.849767 0.833798899 0.862359001 302540196 mannanase Streptomyces hygroscopicus ATCC 53653 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces himastatinicus; 0.933466839 0.98975767 0.88815059 0.925581408 0.868831655 0.962952598 0.879886325 0.897371987 0.924783363 0.892717135 0.888026889 0.965402966 0.880288092 0.908765234 0.852757669 0.92535704 0.944635896 0.970886351 119409935 pme_Cdeg Neosartorya fischeri NRRL 181 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 0.891055348 0.868257791 0.887424717 0.856034079 0.856257582 0.889160448 0.870692373 0.883660209 0.861783216 0.833185021 0.858842221 0.825560273 0.873431713 0.87743512 299792201 arsm Amycolatopsis mediterranei U32 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 0.878873105 0.787025647 0.885089321 0.805604509 0.825450486 0.826095707 302466204 cpna Streptomyces himastatinicus ATCC 53653 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces himastatinicus; 0.776350665 0.777586404 354954337 dehh109 Bradyrhizobium japonicum USDA 6 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 1.289101903 1.230955315 1.27313236 1.289699844 1.284485632 1.302809558 1.292168703 1.298142127 1.264499773 1.272661912 1.271111747 1.284660768 1.248635497 1.238583433 1.230672918 1.2439282 1.271070945 1.263081962 303298878 arsc Parvularcula bermudensis HTCC2503 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Parvularculales;family:Parvularculaceae;genus:Parvularcula;species:Parvularcula bermudensis; 1.013372772 1.061453112 0.994076071 1.05695277 0.931404839 1.047993784 0.872291634 0.854012708 0.994462327 1.012905249 0.998051911 1.013564432 0.978112643 0.970760749 0.855203341 0.920388409 0.994449272 1.030273727 169187451 badh Paenibacillus sp. JDR-2 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 0.827732697 0.793485472 0.796465567 0.830427125 0.871818943 0.809845649 0.843052117 0.803484743 0.822116552 254473595 soxY Pseudovibrio sp. JE062 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 0.97323342 1.038837017 0.945208627 1.027468374 1.073600142 1.0163824 1.039283666 0.940106076 1.049523262 1.059442863 1.066983953 1.074477843 1.02586248 0.91212336 0.951641536 0.948618026 0.951121828 0.949634842 4406091 tfdb Burkholderia sp. TFD2 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 0.832498878 0.898257242 0.923550466 0.807663785 0.846180376 0.85845205 0.864126689 0.820363172 0.875067669 0.847280425 0.931919204 0.895248662 145218029 cutinase Mycobacterium gilvum PYR-GCK Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 0.958499628 0.980673398 0.938859611 0.983934304 0.934133885 0.966754929 0.964506761 0.971762039 0.973912193 0.943486422 0.909066696 0.978568029 0.915359898 0.922333565 0.843375862 0.870340822 0.954250225 0.999839896 334108371 xyla Isoptericola variabilis 225 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Promicromonosporaceae;genus:Isoptericola;species:Isoptericola variabilis; 1.161871943 1.145762839 1.107960528 1.131768756 1.141723495 1.141808305 1.109646231 1.116313648 1.118211545 1.102294026 1.104841082 1.115304907 1.09879399 1.084089797 1.065459739 1.097194698 1.134685554 1.124578494 259033095 urec Mesorhizobium opportunistum WSM2075 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium opportunistum; 1.185394721 1.13101907 1.16267132 1.097857815 1.068848098 1.137410925 1.086893063 1.091125996 1.116260977 1.056591877 1.156438309 1.145802156 1.083452609 1.084986259 1.080464671 1.103931803 1.126743541 1.11129295 302885394 phospholipase_C_fungi Nectria haematococca mpVI 77-13-4 Carbon Cycling Carbon degradation Phospholipids superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Nectria;species:Nectria haematococca; 0.867316313 0.950239897 0.823784563 0.871803885 0.87311641 0.883296611 0.841777792 0.887828655 0.939330406 0.943841837 0.85608087 0.850997133 0.89525414 0.866664585 0.887576348 301108069 pectin_lyase_Oomycetes Phytophthora infestans T30-4 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;order:Peronosporales;genus:Phytophthora;species:Phytophthora infestans; 0.930971114 0.917082415 0.896717743 0.963900178 0.927689697 0.944675046 0.882731215 0.925401288 0.897208854 0.928491842 0.831314678 0.912003419 0.89587584 0.87136108 0.850564249 0.883478256 0.954824435 0.931700912 227483373 tktA Bradyrhizobium sp. ORS 278 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 1.17340614 1.14779487 1.150752733 1.147166208 1.12689998 1.167815703 1.127972087 1.152539875 1.155435453 1.13582959 1.116398264 1.14269292 1.111708062 1.12089646 1.101766791 1.113295099 1.148946964 1.160648543 396926160 badh Rhodococcus sp. JVH1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 1.034971163 1.039198307 1.049344494 1.017722507 1.060260076 1.072606941 1.035515888 1.027605227 1.051216823 1.075033116 1.041959539 1.027468346 1.037306249 1.004041531 0.983885919 0.995041596 1.070612482 1.075845606 270047914 phenol_oxidase uncultured Lentinus Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Lentinaceae; 1.131863311 1.23637054 1.143809704 1.108354388 1.097620911 1.118257343 1.105279388 1.14182344 1.089951247 1.089416105 1.071969014 1.154839192 1.065805846 218324093 acetylglucosaminidase Vibrio splendidus LGP32 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio splendidus; 1.061690724 0.945979902 0.938897095 0.956839421 0.933993938 0.928974317 0.887533948 0.940201286 1.029275314 0.906319184 0.853845547 0.90260165 0.886235876 0.884477086 0.894431907 0.880357268 0.950238618 0.953352671 210630336 cellobiase Collinsella stercoris DSM 13279 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Collinsella;species:Collinsella stercoris; 0.952814496 1.06923297 0.929401743 1.038122545 0.977965787 0.807080856 0.982247097 0.850256212 0.957204002 0.914448982 0.883170197 0.987437081 0.935807711 0.832514969 0.905208953 0.826731627 0.965307809 0.95807911 344169756 cmci blood disease bacterium R229 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 0.811646901 0.861220036 134100570 poba Saccharopolyspora erythraea NRRL 2338 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 1.265015507 1.245122522 1.216934227 1.240646519 1.225256985 1.248101178 1.209760847 1.199244433 1.234608312 1.215895084 1.223100893 1.261888202 1.194570257 1.202394176 1.158415389 1.203874878 1.237590476 1.224640074 307218216 arylest Halomonas elongata DSM 2581 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas;species:Halomonas elongata; 0.858193342 0.828124322 0.819320808 0.902677887 0.820970931 0.776073859 0.848824724 0.856460283 0.890115239 0.871613548 0.858538614 0.893188745 0.782902241 0.819171655 0.798815755 0.891823151 0.868886318 331698022 ben_bcla Pseudonocardia dioxanivorans CB1190 virulence NA NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Pseudonocardia;species:Pseudonocardia dioxanivorans; 1.050910031 1.06016683 1.091126739 1.056025179 1.099548606 1.073492177 1.072332907 1.059784056 1.050319569 1.031021334 1.088663993 1.047677704 1.030770479 0.999932058 0.971975398 0.986786051 1.047608011 1.085819769 119485538 endopolygalacturonase_fungi Neosartorya fischeri NRRL 181 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 0.816721032 0.810763696 0.905133711 42494422 cmua uncultured bacterium Organic Remediation Chlorinated solvents NA superkingdom:Bacteria; 1.19205593 1.16699899 1.167966295 1.161438828 1.137442158 1.195299757 1.161312084 1.191566803 1.167353131 1.160329863 1.134574707 1.169594098 1.123631627 1.150505006 1.105881723 1.146311032 1.140256503 1.170265653 219741376 FBPase Ralstonia eutropha JMP134 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 0.845602911 0.872768505 0.843444086 0.84963847 0.895375698 0.845941275 0.882638333 0.853846267 0.85663392 0.894093639 0.949023821 0.947970497 0.837421631 0.862055018 0.894905064 0.910931153 0.816077941 0.886583153 133915319 amyA Saccharopolyspora erythraea NRRL 2338 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 1.113047036 1.142262979 1.140760716 1.149000443 1.165055845 1.177667498 1.144180979 1.144326868 1.13818951 1.167037156 1.169849274 1.167733713 1.135885899 1.090598904 1.085754546 1.125844236 1.169948353 1.140879381 225351121 amyA Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium pseudocatenulatum; 0.944160104 0.920067721 0.892847762 0.988140501 0.87364237 0.93476144 0.87134561 0.911712311 0.96852343 0.907113838 0.932988752 0.909008252 0.844420527 0.87485104 0.938959643 0.964941499 0.940129559 326947818 por_DiC4HB Thermoproteus uzoniensis 768-20 Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Thermoproteus;species:Thermoproteus uzoniensis; 1.241152846 1.240219344 1.220263783 1.222930104 1.20232444 1.251962065 1.213222788 1.209324851 1.210180301 1.209621435 1.211438236 1.226326348 1.182560046 1.210693696 1.1841592 1.213755245 1.248798416 1.229934795 329298211 cysJ Plautia stali symbiont Sulfur Reduction NA superkingdom:Bacteria; 1.017203184 0.989550901 0.962199105 1.011254185 0.95663045 0.977713101 0.937849948 0.898286327 0.983977996 0.964596707 0.950571349 0.95527017 0.905491973 0.92794647 0.890031058 0.93299122 1.005575775 0.982707667 258619063 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.027875296 1.040367031 1.024794779 1.074714356 1.049791222 1.092568668 1.020338128 1.048715318 1.031111163 1.072476697 1.043001227 1.071768961 1.025854094 1.045068964 1.013462489 1.040827104 1.077424121 1.064827836 117989599 dehh109 Burkholderia phytofirmans PsJN Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 1.092909063 1.069776937 1.070223153 1.069303313 1.070125414 1.069367823 1.103337606 1.079233761 1.115892098 1.08538209 1.077325049 1.076829283 1.05588071 1.065824127 1.036709509 1.050177597 1.09350084 1.069040447 328491672 chitinase Photobacterium leiognathi subsp. mandapamensis svers.1.1. Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium leiognathi; 0.839084162 0.869069974 0.822968424 0.936610737 0.843313519 0.793480273 0.825162215 0.854738707 0.840445703 0.81447777 0.861196773 0.824979451 0.869123707 0.904569595 294673861 acetylglucosaminidase Prevotella ruminicola 23 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella ruminicola; 0.867816567 0.806077733 95112930 tktA Pseudomonas entomophila L48 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas entomophila; 0.970197964 0.9313717 0.929946429 0.911459597 0.935929452 0.932278752 0.912345153 0.88211776 0.910714397 0.949928971 0.929194838 0.916894957 0.916067316 0.924993099 0.896379187 0.902653498 0.928203829 0.993181571 85687921 linc Erythrobacter sp. NAP1 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter; 0.98957064 1.000827265 0.999477815 0.985514953 0.949102618 0.931260667 0.943929668 0.978976976 0.993982302 0.977445808 0.960247855 0.973963422 0.917534049 0.922831617 0.887303572 0.940323322 0.970129574 0.939546088 27380033 phta Bradyrhizobium japonicum USDA 110 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 1.203476655 1.110423803 1.106192071 1.045160306 1.093689229 1.183380271 1.12682852 1.191026376 1.219714516 1.16895038 1.227235888 1.178867217 1.149262824 1.17372537 1.189484764 1.201308739 1.193513815 1.201559437 388059266 amyA Gardnerella vaginalis 1500E Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Gardnerella;species:Gardnerella vaginalis; 0.990478394 0.864064217 0.935784297 0.880689887 0.943983035 0.990078578 0.939068078 0.90341201 0.894734432 0.939181983 0.92704228 1.044140692 0.89693101 0.874739488 0.910129905 0.8777338 0.886742541 0.943548495 223039917 mdh Campylobacter rectus RM3267 Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter rectus; 1.092320324 1.072847758 1.084439811 1.091938185 1.083752307 1.032203469 1.085579277 1.070472024 1.092131731 1.089676955 1.08142318 1.118385524 1.02718107 1.027044846 1.011758319 1.05897084 1.107415935 1.10559221 460032 protease_serine_fungi Paecilomyces lilacinus Carbon Cycling Carbon degradation protein superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Ophiocordycipitaceae;genus:Purpureocillium; 0.793643999 0.817746057 0.813166805 0.827279557 0.795290847 0.802141741 0.865671159 222543172 phytase uncultured bacterium Phosphorus Phytic acid hydrolysis NA superkingdom:Bacteria; 1.42109443 1.376894106 1.371490584 1.373725687 1.3517777 1.391817546 1.342299438 1.375097527 1.360075803 1.356444958 1.350853588 1.37016836 1.332023143 1.348476395 1.335937152 1.363095648 1.397503462 1.36735064 3059212 bphb Rhodococcus erythropolis Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 1.022969251 1.020908028 1.099678992 1.047026864 1.019091579 1.074047744 1.073434796 1.087074327 1.084168977 1.090453685 1.037181851 1.002092257 0.972293387 1.022606084 0.902479979 1.016141803 1.075451695 1.069998628 374998622 FBPase Azospirillum lipoferum 4B Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum lipoferum; 0.982348188 0.959283573 1.006598723 0.992956162 0.9767736 1.021189187 0.952378469 0.972331524 0.984469409 0.959095948 0.977498611 0.954243872 0.977758677 0.948891109 0.964415785 0.973444483 0.971067236 0.973722869 357590336 mult_ring_12DiOx Corynebacterium nuruki S6-4 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium nuruki; 1.010416011 1.015042526 1.006824841 1.017719711 1.028891385 1.042497199 1.007365263 1.035021411 1.002927153 1.007275464 0.995847106 0.980454121 1.018598396 0.925881824 0.881970191 0.918270949 1.017839518 0.998655292 156233863 tehb Roseiflexus castenholzii DSM 13941 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus;species:Roseiflexus castenholzii; 0.834043649 0.837992539 222420176 tetx_resistance Staphylococcus carnosus subsp. carnosus TM300 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Staphylococcus;species:Staphylococcus carnosus; 0.879914287 0.836860832 0.931282265 0.943118265 0.926326984 0.95826155 0.896546036 0.949168342 0.873172351 0.974058046 0.913030274 0.929939534 0.891265681 0.882510392 0.899112129 0.876967491 0.876401839 330982179 cysI Pseudomonas syringae pv. aptata str. DSM 50252 Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae; 0.808961145 0.844535963 0.866735762 0.850838412 0.821917282 0.838969423 0.841149849 0.857603135 0.863892151 0.83625552 0.823245614 0.838962032 0.814710132 0.812085689 373554544 amyA Mycobacterium tusciae JS617 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tusciae; 0.95516038 1.000940536 0.878445617 0.901228563 1.005297533 0.955832875 1.006385628 0.934780769 0.908697715 0.998080658 0.957976781 0.940499328 0.935656271 0.914348277 0.916653679 0.978987953 0.881871852 1.008903943 148502891 limeh Sphingomonas wittichii RW1 Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 0.938052533 0.848048132 0.824654682 0.892517452 0.90271649 0.83443211 0.850316241 0.834010031 0.880364267 0.809102908 0.874949593 0.899134404 0.902998422 0.842872985 0.887521946 0.892170011 0.812546435 4204206 acetylglucosaminidase Enterobacter sp. Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 1.181176111 1.099764506 1.140212531 1.132202569 1.110746703 1.215645889 1.087742474 1.102860457 1.097133047 1.072926118 1.064432758 1.086789015 1.073697814 1.069576902 1.076979791 1.071550328 1.175382589 1.094870648 342861529 cutinase Mycobacterium colombiense CECT 3035 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium colombiense; 1.308478845 1.22335507 1.258832134 1.304619099 1.259837531 1.306274545 1.231427806 1.261531988 1.284750214 1.239631966 1.248811066 1.279017842 1.259467808 1.210887769 1.217233165 1.259144604 1.305168196 1.238056141 256645875 ppx Acetobacter pasteurianus IFO 3283-26 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acetobacter;species:Acetobacter pasteurianus; 0.899912958 0.837434925 0.877360698 0.830609481 0.823002784 0.755699186 392722233 one_ring_12diox Novosphingobium sp. Rr 2-17 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 0.873820904 0.967856719 0.886991798 0.903823751 0.888502286 0.901200934 0.857934929 0.878157845 0.879738646 0.888659083 0.873744513 0.873559569 0.859352515 0.838724375 0.813269944 0.912044852 0.885352431 0.882883035 255297750 terc Corynebacterium tuberculostearicum SK141 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium tuberculostearicum; 0.836375797 0.869337497 0.810330285 0.918099869 0.864083909 0.939074712 0.908073588 0.938507374 0.928983401 0.918306655 0.920606344 0.904245375 0.853876935 0.896412058 0.883151642 0.841377733 0.872656658 0.86300685 392108502 terc Mycobacterium abscessus 5S-0708 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium abscessus; 1.078284864 1.099534365 1.08202866 1.076901037 1.073161384 1.125863669 1.089833159 1.087402673 1.070260785 1.067646496 1.050414675 1.063250696 1.052410032 1.036815726 0.962349334 1.041842569 1.073085917 1.095816252 326335549 ppk Capnocytophaga sp. oral taxon 338 str. F0234 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Capnocytophaga;species:Capnocytophaga sp. oral taxon 338; 0.783086203 0.779741243 0.845150957 0.810647175 0.799919792 0.82051737 0.790865097 0.829426901 0.841325108 0.818710956 111017540 mhpb Rhodococcus jostii RHA1 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 1.029173682 1.02367162 1.035503527 1.023811056 0.925822075 0.987620119 0.926623376 0.9867627 1.006831514 0.972026656 0.953553838 0.996112881 0.931104732 0.962364906 0.941680829 0.961749037 1.045438295 1.019393571 383778031 alkb Actinoplanes missouriensis 431 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes;species:Actinoplanes missouriensis; 1.025225146 1.007958581 0.971632544 1.034231932 0.995689003 1.009586571 0.988690898 0.983568603 0.984712287 1.000900131 0.98626348 1.006656948 0.984175864 0.990436822 0.993937764 1.003353076 1.040588845 0.970261731 290467867 phytase uncultured microorganism Phosphorus Phytic acid hydrolysis NA 0.930247193 0.904844635 0.934645758 0.881311875 0.903277155 0.897342416 0.918933236 0.93306928 0.878719606 0.900204737 0.907914813 0.913165639 0.793500465 0.837728393 0.822795349 0.939180181 0.986903179 261212865 amyA Vibrio sp. RC341 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 0.9238543 0.920907002 0.926365763 0.98718138 0.945001598 0.89800749 0.885417897 0.900144565 0.95676744 0.955657422 0.930694859 1.022564002 0.901183892 0.896054415 0.882445043 0.884292321 0.948281461 0.926514642 292648068 amyA Selenomonas noxia ATCC 43541 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas noxia; 0.996434649 1.018005735 1.011015578 0.999865179 1.054346335 1.117745458 1.027461055 1.031186504 1.027455681 1.050932488 1.02292074 1.027596718 1.009119487 1.015655872 0.971359268 1.005530419 1.004558568 1.04491356 291583648 TIM Sideroxydans lithotrophicus ES-1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Gallionellales;family:Gallionellaceae;genus:Sideroxydans;species:Sideroxydans lithotrophicus; 0.977501018 0.970478701 1.032163631 1.026113705 0.971690802 0.99047959 0.93930311 0.962829855 0.99526562 0.978819209 0.974799182 1.029795198 0.96247206 0.972305028 0.995086495 0.991474105 1.040346326 1.008782636 86567195 terc Frankia sp. CcI3 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 0.842719992 0.837257195 0.903359811 0.880093031 0.914602019 0.87809404 0.884361772 0.89340556 0.891498041 0.861582972 0.909654944 0.918234141 0.839260985 0.912558296 0.842304176 0.862788038 0.821651638 395009073 nfsa_2 Acidovorax sp. CF316 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 0.861618782 0.912740932 0.908657463 0.891524455 0.909811997 0.927783447 0.854475755 0.872847454 0.835203924 0.878371146 0.895109644 0.916891392 0.897409991 0.864288598 0.834681049 0.856528453 0.906524803 0.876492157 363415249 mer Acidovorax sp. NO-1 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 1.058735107 0.985541951 0.974532557 1.014864873 0.9756741 0.989302202 0.981283847 0.994758309 1.02329884 0.998189075 0.980080568 1.031525137 0.952002284 0.947486556 0.908437419 0.982579678 0.961189715 0.966091457 254452933 TIM Octadecabacter antarcticus 238 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter arcticus; 0.84331671 0.792342542 0.818843038 0.838501993 0.802478216 0.852256895 0.855377618 193870818 nitrate_reductase Chlorella vulgaris Nitrogen N Assimilation NA superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Trebouxiophyceae;order:Chlorellales;family:Chlorellaceae;genus:Chlorella; 0.947759586 1.01130204 0.890951704 1.010807337 0.909301997 1.017797679 0.882705094 0.812598438 0.973483487 1.010248966 0.919409674 0.99829996 0.947479165 0.980565163 0.883910215 0.959196454 0.981925612 1.028223734 300023046 FBPase Hyphomicrobium denitrificans ATCC 51888 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium;species:Hyphomicrobium denitrificans; 0.794715851 0.802123744 0.821796071 0.835041026 0.865747022 0.872976719 389864062 badh Modestobacter marinus Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Geodermatophilaceae;genus:Modestobacter; 1.205544964 1.1751329 1.166396823 1.203846047 1.157446507 1.208150231 1.126411455 1.130143214 1.156463357 1.12868472 1.127350873 1.150814204 1.134773396 1.118061557 1.121474551 1.131540716 1.211693223 1.163600618 255268765 ppk Bryantella formatexigens DSM 14469 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;species:Marvinbryantia formatexigens; 0.822019102 0.834957923 0.836981143 0.807651804 0.832355593 0.84236934 0.855816879 0.804787374 0.784247569 0.859667976 0.788181086 0.833885421 0.885273311 30269577 nasa uncultured bacterium Nitrogen Assimilatory N reduction NA superkingdom:Bacteria; 0.914567282 0.858360545 0.917853893 0.841039516 0.970285732 0.830844648 0.923684823 0.884387152 0.861962653 0.883592554 0.920605895 0.818524083 0.848569508 0.822117873 0.916886705 0.932003706 393165222 B_lactamase_A Alcaligenes faecalis subsp. faecalis NCIB 8687 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Alcaligenes;species:Alcaligenes faecalis; 0.890099592 0.884240404 0.924263778 0.924565223 0.965186153 0.897720272 0.961721985 0.938317194 0.913800297 0.869409068 0.917877421 0.955926945 0.923402964 0.863578541 0.915130461 0.944486067 0.869749846 0.879923277 254295324 tktA Hirschia baltica ATCC 49814 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Hirschia;species:Hirschia baltica; 0.87220372 0.774566141 315649563 terc Paenibacillus vortex V453 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus vortex; 0.858118073 0.875415608 0.841518486 0.89106703 0.854990276 0.855690467 0.819428343 0.834502451 0.860709996 0.846492006 0.889328608 0.843987025 344313833 linb Streptomyces sp. SirexAA-E Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 1.011123168 0.992027782 0.973836856 1.007281617 0.987930236 1.019427525 0.984834512 0.958610461 0.980095332 0.957599256 0.964212323 0.986360053 0.962749806 0.930986071 0.941645522 0.965989579 1.015451425 1.003179521 149939136 dsra uncultured bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.900120715 0.867507197 0.916369175 0.93996593 0.886302186 0.935546318 0.871180809 0.924494347 0.934108958 0.92214853 0.921649225 0.901048997 0.925133441 0.891700701 0.882596142 0.886704436 0.914909318 0.936068374 353182148 cda Mycobacterium rhodesiae JS60 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 0.768140076 0.804853449 0.808151157 0.77364842 148271489 ara Clavibacter michiganensis subsp. michiganensis NCPPB 382 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Clavibacter;species:Clavibacter michiganensis; 0.839696197 0.96884452 0.859305359 0.811296013 0.799713066 0.822803179 0.818769972 0.903778893 0.803614774 0.827778162 112462659 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.185242952 1.164770026 1.166101111 1.211287533 1.158079331 1.17727535 1.171221414 1.170327901 1.155279747 1.135262348 1.163223766 1.167394296 1.166829612 1.135656491 1.148504573 1.166241253 1.199183549 1.139390347 294341083 narg Thiomonas sp. 3As Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Thiomonas; 1.044349578 1.062786854 1.043521012 1.021959152 1.034635666 1.096510651 1.003374677 0.987178325 1.03358222 0.975320295 1.106581281 1.000146878 1.001105447 1.020145928 1.004597764 0.997193162 1.088663554 1.040897134 14025552 tktA Mesorhizobium loti MAFF303099 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 0.821950342 0.789875778 0.831723411 0.926542624 359787466 ppx Halomonas sp. GFAJ-1 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas; 1.271490678 1.239236172 1.218151093 1.227675051 1.177592167 1.222398779 1.072428753 1.119367939 1.240798199 1.211835403 1.210122878 1.227544334 1.186007203 1.227539877 1.110173057 1.165121096 1.254073103 1.224172749 254970949 SoxA Acidithiobacillus caldus ATCC 51756 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus caldus; 0.886619374 0.92315223 0.935748181 0.998451347 0.946988941 0.907458551 0.953140672 0.965129853 1.021976703 0.911701876 0.916579444 0.908477396 0.949882128 0.883917521 0.846233104 0.917767253 0.958841922 0.885216998 260420749 TIM Citreicella sp. SE45 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Citreicella; 1.048177168 1.064970761 1.025499208 1.046469295 1.002819374 1.122710704 1.076014956 1.003351887 1.040609278 0.970903466 1.042343579 1.023232221 0.97254548 1.004497389 0.978330145 0.988996593 1.039964954 1.01970114 297564620 phenol_oxidase Meiothermus silvanus DSM 9946 Carbon Cycling Carbon degradation Lignin superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Meiothermus;species:Meiothermus silvanus; 0.884008063 0.886928289 0.864680676 0.919411277 0.861610461 0.851674402 0.863723936 0.83668026 0.872411729 0.849856331 0.825870243 0.883713359 0.898739162 0.899109098 117981544 dehh109 Burkholderia phymatum STM815 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 1.177679372 1.10554954 1.133093142 1.152012002 1.152907839 1.170214721 1.146303557 1.14258091 1.173320868 1.136665331 1.159666891 1.161938441 1.108661668 1.122428323 1.099094419 1.106356115 1.176942873 1.157642868 377528375 ppk Gordonia sputi NBRC 100414 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia sputi; 1.000323904 1.02487716 0.91107001 0.98345541 0.93277096 1.00207893 0.940437248 0.935562971 0.959460813 0.960106672 0.969774542 0.98826995 0.938099826 0.942332643 0.940001362 0.960164032 0.993480977 0.965610995 294365 poba Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.963222856 0.943406678 0.947303677 0.928430282 0.899190755 0.913095698 0.893353249 0.933230812 0.945422686 0.953379608 0.917599211 0.947178848 0.897776053 0.910469617 0.902749698 0.895688099 0.956753825 0.965959327 76666825 APS_AprB uncultured sulfate-reducing bacterium Sulfur adenylylsulfate reductase NA superkingdom:Bacteria; 0.815331391 0.875945402 0.879576069 0.907189143 0.993503715 0.844430826 0.876332428 0.864170217 0.950052914 0.869096455 0.802547106 0.948455038 0.864551712 0.888810772 0.914735745 0.87681533 0.866921935 0.887155054 237846168 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.955172022 1.009728659 1.035986127 1.034066509 0.981888999 1.033529245 0.985301894 0.986438287 0.970088242 0.984159337 0.982276059 0.993233911 0.929948349 0.93459232 0.946051363 0.946613108 1.018483819 0.991816187 392848215 nfsa_2 Rhizobium leguminosarum bv. viciae USDA 2370 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 0.837238014 0.967577985 0.88669098 0.854042622 0.919590851 0.958329843 0.891876566 0.913416385 0.982662301 0.972690662 0.854383534 0.89822669 0.868424249 0.873013696 0.894772386 0.822303831 0.922519105 0.917836104 163796218 cysI alpha proteobacterium BAL199 Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 0.958284246 0.885027882 0.807297453 0.880373825 0.904725181 0.889104033 0.855689955 0.882861718 0.862601496 0.883059054 0.866605506 0.880737358 0.861281109 0.845137264 0.851957739 0.88742894 0.856716156 52785146 RgaE Bacillus licheniformis ATCC 14580 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus licheniformis; 0.940054871 0.921616295 0.956454512 0.951776913 0.940041216 0.942208891 0.940946898 0.97194209 0.991150743 0.921814917 0.933715382 0.979586049 0.901220976 0.929315292 0.935585209 0.952118587 0.940863353 0.92422662 302561604 ara Streptomyces griseoflavus Tu4000 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseoflavus; 1.149285372 1.146348524 1.126787692 1.128271091 1.123284242 1.164950887 1.124630106 1.119447663 1.123900472 1.125459876 1.119319483 1.127051051 1.109340457 1.081355784 1.101140766 1.072662535 1.148938563 1.10727286 227420837 APS_AprB Desulfohalobium retbaense DSM 5692 Sulfur adenylylsulfate reductase NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfohalobiaceae;genus:Desulfohalobium;species:Desulfohalobium retbaense; 0.842228054 0.884002422 0.848320728 0.803299793 0.807401447 0.825029759 0.8377002 0.81623092 0.874912798 0.845945413 0.883828181 219130936 hsp90_Stramenopiles Phaeodactylum tricornutum CCAP 1055/1 Other Phylogenetic NA superkingdom:Eukaryota;phylum:Bacillariophyta;class:Bacillariophyceae;order:Naviculales;family:Phaeodactylaceae;genus:Phaeodactylum;species:Phaeodactylum tricornutum; 1.037583674 0.960825934 0.995990789 1.028032162 0.901199622 1.014553977 0.910281615 0.968841284 1.017702118 0.96483154 0.962369036 0.945548112 0.900326218 0.91131749 0.862731366 0.972434133 1.089004291 0.998847065 312115120 mer Rhodomicrobium vannielii ATCC 17100 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Rhodomicrobium;species:Rhodomicrobium vannielii; 1.092549951 1.055537217 1.057145488 1.132579215 1.026886039 1.100921135 1.033202559 1.096477971 1.109930403 1.067344979 1.068514212 1.061309843 1.022679858 1.027699688 0.990473431 1.058196278 1.116522086 1.047418584 339330989 amyA Mycobacterium africanum GM041182 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium africanum; 0.879253286 0.876849488 0.835418922 0.875210271 0.868278758 0.89275504 0.876348852 0.918302674 0.910646578 0.874279804 0.886553663 0.791825244 0.82442689 0.840785343 0.861568744 0.856171668 118424419 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.962640004 0.906507005 0.936167579 0.92941514 0.860576036 0.992205913 0.88036637 0.876976409 0.934143737 0.889873995 0.922829658 0.91854258 0.910732234 0.916213855 0.8361665 0.880431779 0.941399284 0.901299127 392985345 terc Pseudomonas aeruginosa DK2 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 1.085965723 1.083318233 1.07148561 1.046459265 1.120901793 1.112266197 1.120112182 1.071737276 1.088570468 1.090861764 1.10436835 1.078643561 1.055976708 1.082933852 1.031601452 1.007137189 1.069387988 1.053054539 164456170 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 0.78891596 0.828829316 0.810913497 0.80823717 0.801810128 0.793755168 256578898 terc Desulfomicrobium baculatum DSM 4028 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfomicrobiaceae;genus:Desulfomicrobium;species:Desulfomicrobium baculatum; 0.777656112 0.892444029 0.860357776 0.875532093 0.841970807 0.822183851 0.886353405 0.871399994 0.860743623 0.857749775 0.908646801 0.89893407 0.815144457 0.888514037 0.860576978 0.808957762 0.870562499 0.893832815 334734104 ppx Enterobacter aerogenes KCTC 2190 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter aerogenes; 1.28636701 1.266825995 1.261430402 1.262635797 1.273864252 1.372899916 1.243915245 1.252242546 1.274822734 1.268278524 1.276939905 1.233890457 1.243981279 1.241715766 1.247560961 1.240903946 1.305284898 1.278482489 396992349 poba Streptomyces auratus AGR0001 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces auratus; 0.980155522 1.005706195 0.970402807 0.974098707 0.979048943 0.976123969 0.953783923 0.999695019 0.984481507 0.968302044 0.965574583 0.93310227 0.948586919 0.921759461 0.912819414 0.920258369 0.989085342 0.994680263 86553578 pgk Synechococcus sp. JA-3-3Ab Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 0.801339309 0.911332341 0.866914158 0.884122182 0.913696735 0.920587271 0.908322299 0.86829542 0.823907182 0.854680973 0.858374512 0.867266195 0.851928448 0.829505841 302524096 xylg Streptomyces sp. AA4 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 1.122686531 1.076509179 1.108569168 1.087887477 1.031088992 1.101131836 1.085751327 1.087207986 1.088247075 1.095040089 1.080363643 1.130961573 1.065285382 1.07247677 1.052093173 1.08498275 1.132934758 1.095525636 21232321 acetylglucosaminidase Xanthomonas campestris pv. campestris str. ATCC 33913 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas campestris; 1.209352886 1.213052677 1.156790019 1.261303925 1.24722388 1.232669331 1.193807024 1.156995128 1.220271306 1.198942044 1.272160734 1.258265667 1.191290615 1.102586099 1.092760293 1.185405751 1.254156024 1.111975754 21624254 one_ring_23diox Comamonas testosteroni Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas; 1.179637093 1.139288335 1.141408207 1.191117036 1.140212036 1.168589837 1.138984192 1.173874586 1.153791829 1.138349134 1.138362201 1.150225097 1.112582917 1.118469817 1.090609987 1.138722529 1.162481458 1.147497997 92112442 mdlc Chromohalobacter salexigens DSM 3043 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Chromohalobacter;species:Chromohalobacter salexigens; 1.296403414 1.254699556 1.261591236 1.251617579 1.248850165 1.297916651 1.236863727 1.24150192 1.241237951 1.268252795 1.265519717 1.234814946 1.230243083 1.224710756 1.234656488 1.221070052 1.283898314 1.258754548 254970198 GAPDH_Calvin Acidithiobacillus caldus ATCC 51756 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus caldus; 0.941404484 0.952371562 0.954392977 0.950093455 0.954408664 1.00147201 0.936897357 0.932795834 0.975572293 0.955494225 0.99502694 0.937520745 0.930020404 0.916443318 1.017481454 0.913356319 0.954079777 0.969985451 340346444 nrfa Prevotella dentalis DSM 3688 Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella dentalis; 0.805794602 0.833885173 0.823062208 0.858864688 0.839651337 0.902159087 0.853000234 0.851865951 0.853987274 0.885885984 0.839231413 0.887538427 0.809301657 0.814515332 0.794421658 0.826841168 0.845199878 0.871611274 264677490 bphd Comamonas testosteroni CNB-2 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 0.840804758 0.859676318 0.921617745 0.906129137 0.95409615 0.935894898 0.887313326 0.827390982 0.910561714 0.926237754 0.807278487 0.86657618 0.83355165 0.87741903 0.87173496 0.853761959 0.950140913 0.939419093 391317829 amyA Shigella flexneri 1235-66 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Shigella;species:Shigella flexneri; 0.790661312 0.796015836 0.778642327 0.802835839 0.791927884 0.754837852 0.808920198 315052220 pcpe Arthroderma gypseum CBS 118893 Organic Remediation Herbicides related compound NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Arthrodermataceae;genus:Arthroderma;species:Arthroderma gypseum; 1.314160285 1.266499112 1.297648563 1.300981296 1.304852939 1.271316379 1.26326072 1.28318693 1.290134527 1.281706905 1.30626015 1.307717413 1.260101652 1.26590805 1.317014649 1.269120943 1.258142037 1.287657124 259693982 exaa(moxf) Methylobacterium nodulans Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 0.995032289 1.097057184 0.964776016 1.03762515 1.02278101 1.071001707 1.02943381 1.038629117 1.032113582 1.010490048 1.006491365 1.044938718 0.991452027 0.934238039 0.999714136 0.999258941 1.010708001 1.041645509 149913715 phn Roseobacter sp. AzwK-3b Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 0.849885856 0.812891555 0.878332197 0.852496672 301638743 mer Desulfarculus baarsii DSM 2075 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfarculales;family:Desulfarculaceae;genus:Desulfarculus;species:Desulfarculus baarsii; 1.08063452 1.073051346 1.064255012 1.084017332 1.056325556 1.06478376 1.032329135 1.064046105 1.057387341 1.075709385 1.057258718 1.079033273 1.032495951 1.008695635 0.995995303 1.034230131 1.111100159 1.079957858 114332295 hao Nitrosomonas eutropha C91 Nitrogen Nitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas;species:Nitrosomonas eutropha; 0.766762179 0.819438231 0.828735359 0.827155027 0.835966693 0.847058493 0.805765887 0.794467269 0.873982427 0.868238603 0.845455613 0.883336438 0.874342408 0.827083108 0.823129648 109457038 pcag Roseobacter denitrificans OCh 114 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter denitrificans; 0.909103373 0.950250596 0.917237065 0.969631642 0.932577917 0.892980595 0.851826398 0.927124555 0.928879905 0.89717924 0.879726847 0.938800511 0.896044033 0.845568304 0.839037886 0.81455558 0.933659616 0.867847649 389794768 arsc Rhodanobacter fulvus Jip2 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Rhodanobacter;species:Rhodanobacter fulvus; 0.783296266 0.988437207 0.791731137 0.798408834 0.81516611 0.785372405 241871971 amyA Weissella paramesenteroides ATCC 33313 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Leuconostocaceae;genus:Weissella;species:Weissella paramesenteroides; 1.116329974 1.096802824 1.094095639 1.055088032 1.149308094 1.161188019 1.123561309 1.039550104 1.05077647 1.159144763 1.08322959 1.083069781 1.104848817 1.146488387 1.142787755 1.089194777 1.087134009 1.086467678 320107936 pme Terriglobus saanensis SP1PR4 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Terriglobus;species:Terriglobus saanensis; 0.809900466 0.821234063 0.793489504 0.81729299 120325752 urec Marinobacter aquaeolei VT8 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter hydrocarbonoclasticus; 1.198964577 1.087753094 1.214533932 1.223220313 1.120614208 1.056714305 1.042662737 1.080726132 1.077642925 1.02192992 1.00723148 1.071027536 1.075329265 1.013674266 0.981630189 1.059469881 1.070212288 1.099186825 221723663 PRI Agrobacterium radiobacter K84 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 0.974752136 1.00749752 0.979708373 0.986132749 0.940707902 1.012617957 0.951305636 0.935326032 0.948733296 0.981175145 0.939169269 0.963432647 0.94531302 0.954648011 0.897200787 0.989722379 1.018496312 0.979008478 399159714 tfda Marinobacter sp. BSs20148 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter; 0.770581106 0.809832383 0.791403288 0.878301495 0.840051107 0.846247663 0.856252681 0.936710824 347587618 nbac Candidatus Chloracidobacterium thermophilum B Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Acidobacteria;genus:Candidatus Chloracidobacterium;species:Candidatus Chloracidobacterium thermophilum; 1.227722501 1.237168523 1.22312901 1.2191467 1.219212502 1.228188073 1.178525635 1.204478407 1.209116148 1.229939666 1.215401237 1.210068463 1.181319562 1.196049478 1.14571385 1.190398349 1.240078797 1.235690665 325979780 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.005069978 0.981817368 1.003821099 1.009111275 1.002575152 0.99228523 1.013440922 0.959271032 0.985037879 1.022987118 1.01094204 1.000970169 0.971150239 1.014104305 0.983184862 0.965767895 0.984087763 0.987192541 338171855 ophc Cupriavidus necator N-1 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 1.196419652 1.156353493 1.17188943 1.180116288 1.130503668 1.149639351 1.092111555 1.137240424 1.141945752 1.146943441 1.172093645 1.171125444 1.142523868 1.138308577 1.116702415 1.138359281 1.16730753 1.135916393 325298779 amyA Bacteroides salanitronis DSM 18170 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides salanitronis; 0.9173562 0.877957109 0.890045159 0.943220507 0.866024861 0.874912766 0.84957135 0.870002057 0.875212354 0.892231187 0.880915281 0.870273469 0.829453369 0.890111779 0.846745645 0.889982465 0.898917386 0.895206677 227821234 FBPase Sinorhizobium fredii NGR234 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium fredii; 0.925455967 0.938226899 0.905703215 0.985442213 0.955136412 0.876297121 1.004376725 1.041058922 1.06342766 0.902176538 0.91975248 0.940074072 0.907248298 0.885776603 0.845224358 0.867718714 0.90276018 1.055814339 294473644 xylanase Prevotella ruminicola 23 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella ruminicola; 0.99539954 0.981636107 0.974634495 1.018782193 0.952582781 0.998516328 0.983942157 0.96561332 0.993686661 0.947449662 0.960184996 0.96415679 0.945035852 0.925922737 0.876464827 0.901163482 1.013483081 0.978230059 261606776 Sir Pectobacterium wasabiae WPP163 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium wasabiae; 0.929145259 0.786328406 0.856387084 0.841454183 0.856573294 0.799284537 0.861471628 0.835890767 0.836644344 0.755421652 0.857642145 422314115 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.89856566 0.895388929 0.949150818 0.911565469 0.90958162 0.925666892 0.926500966 0.948373928 0.918054487 0.918889558 0.924366065 0.887787885 0.880313881 0.932410149 0.883696064 0.902306467 0.962870928 0.980850863 121594453 chnd Acidovorax sp. JS42 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 0.913559376 0.936318032 0.939502661 0.938794559 0.930241269 0.931404507 0.9609363 0.9068602 0.926215526 0.878200393 0.8892561 0.90840778 0.895876716 0.903598294 0.879134062 0.825606634 0.931418893 400332812 msad Mycobacterium colombiense CECT 3035 Organic Remediation Others NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium colombiense; 0.956433218 0.928969829 0.95017796 0.930716842 0.981525628 0.967666741 1.012495455 0.928666654 0.989910228 1.001926635 1.003694728 1.006845853 0.921549716 0.918480661 0.944720084 0.899816276 0.997963338 1.001600144 21224847 endoglucanase Streptomyces coelicolor A3(2) Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 0.952075678 1.002317055 0.962536473 0.903311437 0.935676624 1.001448677 0.937266411 0.943436966 0.878744399 0.993475681 1.006072173 0.944518026 0.951849912 0.953295007 0.979169458 0.939062636 0.924796888 1.006003943 222441150 dmdA Labrenzia alexandrii DFL-11 Sulfur DMSP degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia alexandrii; 0.873133602 0.891824861 0.909061228 0.930888765 0.928892108 0.900750962 0.910707121 0.93026001 0.906552422 0.900980818 0.906177769 0.914832903 0.89253091 0.907486757 0.839268693 0.880742813 0.864384944 0.889056651 66963167 amyA Arthrobacter sp. FB24 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 0.88422046 0.955637488 0.89370546 0.919961244 0.94412873 0.909379354 0.887183417 0.885709361 0.937413523 0.940024112 0.902313435 0.934532571 0.873540132 0.892495534 0.857746993 0.90651269 0.930615787 0.963493839 387591443 urec Bacillus methanolicus MGA3 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus methanolicus; 0.904331187 0.988846963 0.826806189 0.907402437 0.855519927 0.915743784 0.858393936 0.904056928 0.901750213 0.936414561 0.887065288 0.886068023 0.839464945 0.885612907 0.791125238 0.881522418 0.89091988 0.963229544 33572392 tfda Bordetella pertussis Tohama I Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella pertussis; 0.84175274 0.817519851 0.875601002 0.847065978 0.794552636 0.846965366 0.812345082 0.754144329 0.827790715 0.841815249 0.867205302 0.833389413 0.826373923 0.854289486 150036084 soxY Rhodothalassium salexigens Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodothalassium; 1.029416719 1.012897752 0.972770677 1.019885642 1.03048144 0.997389686 0.986647927 0.990109799 1.015517981 1.023983603 0.989524888 0.984432105 0.941515695 0.979287713 0.943848327 0.941141706 0.986429854 1.01264119 74035820 cmua uncultured marine bacterium Organic Remediation Chlorinated solvents NA superkingdom:Bacteria; 1.145349963 1.134134594 1.127663508 1.146120101 1.182512897 1.168373233 1.140837127 1.103210896 1.169965567 1.18569932 1.152357213 1.22072774 1.199137346 1.152724098 1.228109625 1.20349249 1.164470382 1.125553206 152990077 ppk Nitratiruptor sp. SB155-2 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;genus:Nitratiruptor; 0.857555389 0.828003977 0.832747444 0.83418192 0.847432831 0.838313495 0.906363541 0.815302613 0.829798825 0.848183196 327189461 amyA Rhizobium etli CNPAF512 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 0.946905397 0.945901033 0.915614694 0.925537687 0.925105264 0.93062332 0.931681827 0.921740797 0.947437838 0.959740246 0.925195389 0.928027754 0.912494564 0.938292873 0.871477462 0.917593925 0.954434741 0.973261304 223714288 arra uncultured bacterium Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 0.762407998 0.794373333 357589284 one_ring_23diox Corynebacterium nuruki S6-4 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium nuruki; 0.980337266 0.970478458 0.930545201 0.946845083 0.903462316 0.933612187 0.906387205 0.93466547 0.922600474 0.939264852 0.955911857 0.949832669 0.921446302 0.894584697 0.87817492 0.907690639 0.951972926 0.963998843 262201500 limeh Gordonia bronchialis DSM 43247 Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia bronchialis; 0.888993365 0.792827281 0.857543763 0.865086583 0.818447433 0.81843324 0.86155203 0.878075255 0.86902283 0.853854976 0.835046181 0.858211824 0.819229278 0.902392519 0.851511277 91802339 rubisco Nitrobacter hamburgensis X14 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter hamburgensis; 1.212232546 1.226965379 1.209605976 1.221355416 1.177458899 1.243438014 1.167296246 1.148376037 1.174216776 1.227430871 1.233768699 1.224086011 1.199983782 1.229479367 1.16923494 1.17894906 1.2058171 1.245162313 358458397 poba Frankia sp. CN3 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 1.015030163 0.989253809 1.013011925 1.00810392 0.990845068 0.986880856 0.98378745 0.985146308 1.01889106 1.011542358 0.994779928 1.040441902 1.009158964 0.995832808 0.963114854 1.003161525 1.056850592 0.992098709 403403214 mdlb Gordonia namibiensis NBRC 108229 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia namibiensis; 0.829025161 0.822968502 343463439 cdh Ketogulonigenium vulgarum WSH-001 Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ketogulonicigenium;species:Ketogulonicigenium vulgare; 1.007775129 1.015477478 1.03843882 1.076305414 1.080605851 1.096452943 1.048449614 1.018988179 1.053297068 1.041947332 1.116803033 1.078402525 1.074211603 1.021024638 1.093441558 1.057652124 1.060878387 1.03120348 255105489 xylanase Thalassiobium sp. R2A62 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Thalassobium; 0.896020774 0.875720099 0.863640008 0.92233075 0.89214064 0.953286911 0.900807695 1.000222358 0.9092469 0.914230334 0.838874811 0.975282095 0.851296157 0.81730868 0.823603394 0.908549729 0.845627966 118174473 cdh Mycobacterium smegmatis str. MC2 155 Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 1.157952824 1.150620546 1.211238414 1.185178911 1.18038819 1.178710741 1.17683759 1.205897189 1.16183949 1.175928273 1.164124324 1.202272267 1.161226013 1.178825236 1.178232972 1.2156165 1.152258601 1.155053715 126236592 one_ring_23diox Mycobacterium sp. JLS Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 0.818916123 0.82996925 0.846470135 0.835949728 0.856113097 0.8082879 0.835934268 0.845489465 0.815271542 0.819694099 0.833370975 0.896661878 260505158 chitinase Serratia marcescens Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia; 0.892061635 0.901168508 0.833716664 0.949356961 0.819936283 0.887415597 0.846675511 0.898672148 0.900149841 0.895033763 0.839580515 0.886233362 0.821347743 0.832984636 0.866742375 0.92968749 0.916860042 302912547 pec_Cdeg Nectria haematococca mpVI 77-13-4 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Nectria;species:Nectria haematococca; 0.828147189 0.803275721 0.846686293 0.863772221 0.879961111 0.817002735 0.884312153 0.875629695 238490254 cutinase Aspergillus flavus NRRL3357 Carbon Cycling Carbon degradation Cutin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus flavus; 0.841634759 0.875276546 0.970039564 0.810384281 0.791305825 0.811855921 0.794406949 0.865271751 0.881838563 0.855208751 316981150 nirk uncultured proteobacterium Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria; 1.122941633 1.084488641 1.086165086 1.120920895 1.06727613 1.091860245 1.054901015 1.116077301 1.134030186 1.096238769 1.089467391 1.121966502 1.130602458 1.078609334 1.117772405 1.094725191 1.132617411 1.090428851 296166856 xylc Mycobacterium parascrofulaceum ATCC BAA-614 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium parascrofulaceum; 1.340278023 1.314964491 1.337199988 1.34497931 1.353398566 1.344945097 1.333161075 1.378927194 1.336932485 1.367761783 1.35221136 1.387458217 1.314830221 1.340541817 1.361463743 1.349120956 1.308186299 1.324875637 156528753 chitinase Vibrio harveyi ATCC BAA-1116 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio campbellii; 0.899905704 0.919040416 0.904159124 0.938103735 0.941428204 0.928985967 0.815633636 0.847836154 0.889296509 0.907816644 0.865960637 0.867693453 0.875910596 0.849489316 0.862304954 0.90584537 0.925879565 0.89505723 422314483 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.071946488 1.028887319 1.047376516 1.105990253 1.014540816 1.06240151 1.023730646 1.010346889 1.066660706 1.039771686 1.04658237 1.052162787 1.010732632 1.011305064 0.984709082 1.034040238 1.082671466 1.038188005 295978615 tktA Gluconacetobacter hansenii ATCC 23769 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter hansenii; 1.09909716 1.101949905 1.095760225 1.090588059 1.095519801 1.122899989 1.101446154 1.100017891 1.115379739 1.097687553 1.064188083 1.099133466 1.066271583 1.05098472 1.007803073 1.071623039 1.095130665 1.097543479 156190313 terc Methylobacterium chloromethanicum CM4 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium chloromethanicum; 1.024968827 1.008608015 0.990568959 1.008149079 1.004551737 1.007754008 1.011944479 0.991695313 1.003025032 0.999833381 0.992731107 1.016913831 0.978332296 0.947343417 0.929377821 0.969022251 1.017724705 1.028762696 365890040 proO Bradyrhizobium sp. STM 3809 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 1.025866538 0.998256821 1.013354378 1.016386454 0.9568505 0.983399523 0.942974432 0.974709515 0.993426761 0.982169801 1.009843507 0.991764497 0.967472445 0.959973017 0.926877825 0.946785991 1.012891151 1.013436948 156112050 acetylglucosaminidase Bacteroides ovatus ATCC 8483 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides ovatus; 0.907637684 0.80931458 0.815736917 0.791057801 0.79783347 0.802561105 0.81763998 0.830540398 389663957 acetylglucosaminidase Nitratireductor aquibiodomus RA22 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Nitratireductor;species:Nitratireductor aquibiodomus; 0.95742893 0.946820017 0.874619112 0.965757019 0.938085271 0.924777407 0.913028807 0.944493897 0.95944869 0.953962973 0.909556075 0.964701059 0.885545944 0.886161802 0.881982807 0.927071735 0.968557105 0.953701403 126629427 atzb Marinobacter sp. ELB17 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter; 0.789252199 0.817354774 119898739 hbh Azoarcus sp. BH72 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 0.822681382 0.807719246 0.867156799 0.864176106 0.869389078 0.867477116 0.85229909 0.839558496 0.812536384 0.826918989 0.847911784 0.825265978 0.807450683 0.823105085 0.837608273 377817486 nfsb_2 Pantoea stewartii subsp. stewartii DC283 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea;species:Pantoea stewartii; 0.981368426 1.006896981 0.923938149 1.008162423 0.900620784 0.992133424 0.923854512 0.924342794 0.987454757 0.9633715 0.951096779 0.931858645 0.900424366 0.938656625 0.877797526 0.938289139 1.007070966 0.968466047 294340651 sqr Thiomonas sp. 3As Sulfur Sulfide Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Thiomonas; 0.786011332 0.809605371 0.828236868 0.816470592 146191986 alkk Bradyrhizobium sp. ORS278 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.86786165 0.946606213 0.922187966 0.873096818 0.789303071 0.897162256 0.7951272 0.831932927 0.885075913 0.929645282 0.799561922 0.853882413 0.843217812 0.925125387 0.859442338 0.832893188 0.944542423 0.950735431 219548675 amyA Vibrio parahaemolyticus 16 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 0.955129447 0.910109777 0.979785665 0.98714453 0.99781735 0.911725236 1.013626921 0.962692705 0.937709531 1.021799993 1.004350233 0.966708802 0.998069829 0.882959995 0.875646602 0.891702471 0.947265672 0.928848741 70982073 rgh Aspergillus fumigatus Af293 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Aspergillus fumigatus; 0.803856596 0.79038117 0.928942021 0.886488767 0.976512549 0.857698825 0.819202633 0.859982285 0.948006902 0.890775842 0.902063196 0.956290089 0.887608655 0.836423472 0.926752446 0.849220778 119391625 narg Microbacterium sp. D1-15 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Microbacterium; 1.217450311 1.213449192 1.137122309 1.165394711 1.144701396 1.227429894 1.124525312 1.122310387 1.187441588 1.192954096 1.182092266 1.165917076 1.128134217 1.141202639 1.075115737 1.137268259 1.191981403 1.21626602 257169861 acetylglucosaminidase Halomicrobium mukohataei DSM 12286 Carbon Cycling Carbon degradation Chitin superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halomicrobium;species:Halomicrobium mukohataei; 1.085951621 1.002586144 1.028677396 1.060499368 1.072598795 1.080491027 1.028535251 0.942768631 0.995706201 1.072064683 0.995547653 1.052722101 1.027273862 1.016069264 1.020044612 1.016656389 1.035331282 1.036458032 302674164 endochitinase Schizophyllum commune H4-8 Carbon Cycling Carbon degradation Chitin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 1.008739937 0.97917579 1.02849058 1.081840183 0.996970199 1.041715712 1.016016904 1.011048746 1.048296079 1.012058271 0.993415673 1.012393537 1.013829535 0.996201033 0.953581757 0.982735314 1.004649806 1.035901466 39933736 bco Rhodopseudomonas palustris CGA009 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 0.825224175 0.8198145 237841645 gdh Toxoplasma gondii ME49 Nitrogen Ammonification NA superkingdom:Eukaryota;phylum:Apicomplexa;class:Coccidia;order:Eucoccidiorida;family:Sarcocystidae;genus:Toxoplasma;species:Toxoplasma gondii; 0.818822383 0.870920987 0.857964529 0.860734649 0.852493781 0.826280291 0.846608275 0.797010717 0.825154782 0.888599587 359400966 vana Novosphingobium pentaromativorans US6-1 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium pentaromativorans; 0.860295984 0.860323524 0.862355078 0.833503988 0.831027437 0.868171486 0.845668426 0.81303995 0.836379231 0.872063585 0.849584474 0.894248576 363713973 dehh Acetobacteraceae bacterium AT-5844 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae; 0.929343038 0.897221889 0.884179771 0.867647171 0.925206163 0.902567451 0.950838729 0.939296167 0.896459261 0.875272894 0.910677442 0.905718288 0.887774852 0.855386915 0.808696653 0.911518732 0.914139709 302550560 RgaE Streptomyces viridochromogenes DSM 40736 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces viridochromogenes; 0.891304603 0.838523925 0.849782697 0.874299146 0.885606821 0.83854615 0.904205038 0.902498242 0.894569394 0.907043226 0.955888183 0.867302482 0.838961975 0.801664645 398177448 one_ring_23diox Pseudomonas sp. GM55 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.789521567 0.812386793 0.800490252 0.837216593 295412521 catechol_b Kyrpidia tusciae DSM 2912 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Kyrpidia;species:Kyrpidia tusciae; 1.239662321 1.249566609 1.208071726 1.242443426 1.219200049 1.228963448 1.22476529 1.23000223 1.235633158 1.204647176 1.226167657 1.222323326 1.180101496 1.167676718 1.169154964 1.194251855 1.243060813 1.225854478 119670393 ppk Azoarcus sp. BH72 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 1.012258536 0.963817859 0.957363991 1.009144413 1.011338262 0.965831602 1.007962359 0.957718751 1.012122354 0.910620078 0.934703043 0.962224879 0.936229708 0.904998409 0.881779951 0.965461801 0.99102438 0.983397828 157804864 aps_apra sulfur-oxidizing bacterium AII2 Sulfur adenylylsulfate reductase NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 0.87854791 0.896078715 0.822870201 0.89227653 0.820063723 0.805781709 0.828998092 0.883347256 0.892806038 0.802671497 0.830222154 0.783243964 0.825630987 0.807624889 0.841679187 0.894266273 0.901340821 398352956 exaa(moxf) Sinorhizobium fredii USDA 257 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium fredii; 0.818942111 0.850899804 0.811746017 0.820608128 0.79247798 0.814193644 0.801055754 0.820073906 0.860375388 108462165 chitinase Myxococcus xanthus DK 1622 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus xanthus; 0.799443818 0.859343952 0.847109521 0.772863553 0.870438596 0.85786151 0.804835908 0.899627184 0.890796276 0.876968661 0.877029327 62086147 bco uncultured bacterium Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria; 0.861058351 0.893807987 0.853638335 0.953799458 0.820427582 0.853255231 0.934989888 0.957703722 0.945020782 0.966106566 0.801292801 0.941965057 0.83555178 0.884671621 0.885761835 328543951 aoxb Polymorphum gilvum SL003B-26A1 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;species:Polymorphum gilvum; 1.070349705 1.093642313 1.078233142 1.111392297 1.093267937 1.074654397 1.080904237 1.09323682 1.080921866 1.069944056 1.094656936 1.09558029 1.062772905 1.065149312 1.064983956 1.064666473 1.091299827 1.076283103 116196480 nitrate_reductase Chaetomium globosum CBS 148.51 Nitrogen N Assimilation NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 1.268597006 1.106973493 1.122578878 1.100670969 1.104246898 1.130428431 1.124887342 1.134985341 1.09509819 1.108646907 1.099137699 1.107417007 1.090363751 1.100741546 1.116110086 1.103848106 1.083734404 1.091907954 170143341 urec Burkholderia graminis C4D1M Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia graminis; 1.042782182 1.026374877 1.021813194 1.011500909 1.008765645 1.020452841 0.974518639 1.046840586 1.016762527 1.005389209 0.973868345 0.966508964 0.970366455 1.016570113 0.96544889 1.021356222 1.033914126 1.057459892 154154537 tfdb Parvibaculum lavamentivorans DS-1 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhodobiaceae;genus:Parvibaculum;species:Parvibaculum lavamentivorans; 1.136602124 1.159745994 1.090345181 1.132655606 1.125165393 1.123124084 1.100053438 1.132725116 1.120847064 1.107635585 1.12724585 1.157480496 1.086761288 1.089830403 1.107337005 1.076783549 1.137903782 1.11172796 381387241 amyA Phycisphaera mikurensis NBRC 102666 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Planctomycetes;class:Phycisphaerae;order:Phycisphaerales;family:Phycisphaeraceae;genus:Phycisphaera;species:Phycisphaera mikurensis; 1.068970293 1.097789622 1.017693331 1.065998466 1.046863896 1.059263136 1.0353469 1.006423277 1.063694943 0.994233934 1.008958979 0.996062462 0.954052155 0.968762835 0.958805596 0.971431997 1.051922088 1.093762211 332377362 fthfs uncultured bacterium Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria; 0.810441963 0.817740122 0.79486818 0.846128222 0.823833727 115366575 cellobiase Stigmatella aurantiaca DW4/3-1 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 0.820798346 0.806064025 323364720 nifh uncultured microorganism Nitrogen Nitrogen fixation NA 0.915493124 0.837467908 0.92321148 0.88523262 0.944431629 0.900649486 0.927716821 0.949174813 0.906373775 0.951515731 0.90982501 0.929075402 0.840502687 0.840763373 0.843695907 0.836473147 0.862263643 0.842467941 124495022 phenol_oxidase Polyporus brumalis Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Polyporaceae;genus:Polyporus; 0.838158663 0.817886452 0.816117136 0.80678301 269921944 vdh Brevundimonas subvibrioides ATCC 15264 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Brevundimonas;species:Brevundimonas subvibrioides; 0.944979335 0.916465478 0.891894031 0.911835793 0.918214697 0.912406992 0.909149097 0.942888517 0.930806354 0.911497984 0.932905842 0.921440943 0.898645844 0.815039464 0.842215613 0.839493001 0.94349462 0.902989753 206579037 badh Klebsiella pneumoniae 342 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 1.103654544 1.063957175 1.025676551 1.083894938 1.005158291 1.058492316 1.035478041 1.046246663 1.052956188 1.063030962 1.038172932 1.048310215 1.023144752 1.054466796 1.010814673 1.010047537 1.071258148 1.085429556 184199505 nirk uncultured denitrifying bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.825222064 0.861651646 0.894466012 0.846366194 0.808140728 0.796610073 0.828459175 0.836007974 0.851818129 0.849562602 0.845321503 0.832948837 0.851298031 0.881874474 0.866283687 0.87155139 14423345 nahb Burkholderia sp. DBT1 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 0.852135155 0.890634725 0.902709789 0.888612761 0.845860544 0.876821625 0.8780002 0.853323513 0.875637758 0.868343496 0.867388899 0.846389325 0.816370133 0.845773273 0.876317295 0.883989884 0.886481065 71067032 dsrB uncultured bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.032519549 0.996811745 0.983042081 1.005494398 0.944247804 1.00930085 0.935775449 0.950315719 1.015594443 0.981210885 0.971111895 0.963522215 0.934697622 0.927653297 0.944553934 0.953967633 1.024016567 0.992988095 114339666 arsc Maricaulis maris MCS10 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Maricaulis;species:Maricaulis maris; 1.149000379 1.153224511 1.110494897 1.138822493 1.104958273 1.168902172 1.104308189 1.122247581 1.109960839 1.119490771 1.094546155 1.119345141 1.087280858 1.075322828 1.082956029 1.132761469 1.159434914 1.132475775 328452232 fthfs Desulfobacca acetoxidans DSM 11109 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophaceae;genus:Desulfobacca;species:Desulfobacca acetoxidans; 1.391330597 1.333198836 1.331858529 1.362032964 1.300520168 1.350752063 1.311593434 1.317264511 1.355113761 1.316617854 1.323879753 1.32053347 1.292511546 1.27256038 1.292786937 1.300851384 1.388300263 1.299589796 255920285 pectinase (pectate_lyase) Actinosynnema mirum DSM 43827 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Actinosynnema;species:Actinosynnema mirum; 1.099476668 1.099232127 1.033124266 1.099183864 1.077763677 1.066814967 1.062908329 1.037508551 1.042662832 1.073154768 1.086391601 1.056430593 1.046008524 1.051356151 1.019480263 1.071412204 1.088720736 1.084731171 359771916 amyA Gordonia effusa NBRC 100432 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia effusa; 0.777839935 0.800906084 389722266 chitinase Rhodanobacter sp. 115 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Rhodanobacter; 0.953593207 0.964123683 0.956592323 0.982351336 0.877436998 0.934212706 0.922561917 0.917798889 0.960831812 0.94994191 0.934300719 0.905757537 0.911115244 0.935436004 0.902506739 0.906324245 0.98055895 0.966593917 37924855 nifh uncultured nitrogen-fixing bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 1.109783274 1.121246731 1.066368527 1.111282689 1.053602784 1.12057113 1.045076806 1.076731015 1.088108833 1.086740268 1.065591873 1.082480568 1.040561153 1.061900155 1.019715865 1.096857618 1.11040998 1.114513 295669328 glucoamylase Paracoccidioides brasiliensis Pb01 Carbon Cycling Carbon degradation Starch NA 0.900249746 0.854660367 0.933252895 0.915024637 0.848427856 0.940641219 0.869498392 0.8855239 0.927668042 0.882763138 0.876664573 0.900154955 0.834358987 0.870475352 0.900882886 0.829190941 0.891303709 0.83861188 118466189 tfda Mycobacterium avium 104 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 1.045617445 0.970282927 0.965441122 1.022991771 0.953518873 1.008563868 0.967368513 0.982088337 0.987546058 0.999446822 1.03021736 1.000889343 0.950533816 0.994301079 0.966428676 0.943899001 0.954004277 0.985264598 297210343 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.773072294 0.893275224 0.841855929 0.794528869 0.854388644 0.833211334 0.835940313 0.817525061 0.835425321 0.881136041 338232923 ppx Bradyrhizobiaceae bacterium SG-6C Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae; 1.121321013 1.123375248 1.127625716 1.160281881 1.120872773 1.091246402 1.094126911 1.155742755 1.144298646 1.094737724 1.113636286 1.13763528 1.090170651 1.067613467 1.137907437 1.108925123 1.109731821 1.11047203 221068516 tehb Comamonas testosteroni KF-1 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 1.208707855 1.229154224 1.191287724 1.188547242 1.161392474 1.194283267 1.139683709 1.155935247 1.16594245 1.176091869 1.147047966 1.164569559 1.125605645 1.145568183 1.101627031 1.165949425 1.202128972 1.180743086 226318818 gdh Deinococcus deserti VCD115 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus deserti; 1.018182417 1.078492697 1.085469717 1.051075429 1.028342963 1.042461257 1.031364782 1.027972291 0.990313884 1.02227522 1.100881003 1.021914347 0.963290293 0.985683288 0.979519801 0.948107852 1.040803456 1.10219662 294884049 aoxb bacterium enrichment culture clone aoxauto31_4W Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 0.851965494 0.896244392 0.851624559 0.832296043 0.886546807 0.88480202 0.877256576 0.871933959 0.879490269 0.883500868 0.837636476 0.840730234 0.838336324 0.821523344 0.820617094 0.777974811 0.842615972 258556481 amyA Nakamurella multipartita DSM 44233 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nakamurellaceae;genus:Nakamurella;species:Nakamurella multipartita; 1.120388479 1.098906223 1.122249796 1.099229847 1.104125841 1.124662485 1.117220969 1.085957071 1.09143004 1.148634556 1.13321041 1.132528615 1.073366915 1.104639393 1.00821304 1.102169591 1.045539791 1.10673842 46111009 pec_Cdeg Gibberella zeae PH-1 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Gibberella;species:Gibberella zeae; 0.927565039 0.807341711 0.839269731 0.874107145 0.844403908 0.848490932 0.819409289 0.876302601 0.840930875 0.819914588 0.879188961 0.813845395 0.821341526 0.83947527 0.823549725 0.834925049 254500896 PRI Labrenzia alexandrii DFL-11 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia alexandrii; 0.817929272 0.846142372 0.839875719 0.842435612 0.802558008 0.82783891 0.815945393 0.796984642 0.908496047 0.828682033 0.817000979 0.826736699 0.797844023 149142735 one_ring_12diox Roseovarius sp. TM1035 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 0.963859909 0.87525048 1.041189537 0.910840634 0.868067972 0.945475891 0.887608369 0.857638116 1.024440389 0.867803555 0.860126064 0.870886583 0.805356245 0.826400572 0.825692583 0.904651346 0.827946687 377577497 amyA Escherichia hermannii NBRC 105704 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia hermannii; 1.232155156 1.187204906 1.190301127 1.203093687 1.202320206 1.202215736 1.189799244 1.196401731 1.198951695 1.188578188 1.22376488 1.201710159 1.191942411 1.149637727 1.145882533 1.16500781 1.219055617 1.179370285 308755055 amyA Ketogulonicigenium vulgare Y25 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ketogulonicigenium;species:Ketogulonicigenium vulgare; 0.868756954 0.821086097 0.838713968 0.854640013 0.880871666 0.870570679 0.838085506 0.835907206 0.880538169 0.852959194 0.898519278 334131543 pgk Methyloversatilis universalis FAM5 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Methyloversatilis;species:Methyloversatilis universalis; 1.307348599 1.268963647 1.274248601 1.293648503 1.210896494 1.271928887 1.224924181 1.247854336 1.277598397 1.238847705 1.243370867 1.258352625 1.208475355 1.226926317 1.218515942 1.245673952 1.285722979 1.250972118 39647574 badk Rhodopseudomonas palustris CGA009 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 1.0008412 1.149298922 0.95637855 0.993480625 0.996112693 0.960427481 0.944394663 0.99705104 0.979261375 1.000463834 0.953319379 0.993935942 1.021295004 0.95307742 0.974461012 0.965580223 1.005656052 0.950840887 269837119 amyA Sphaerobacter thermophilus DSM 20745 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Chloroflexi;class:Thermomicrobia;order:Sphaerobacterales;family:Sphaerobacteraceae;genus:Sphaerobacter;species:Sphaerobacter thermophilus; 1.469703944 1.437090414 1.451958794 1.472252728 1.447179328 1.441321636 1.444549983 1.477292778 1.457569791 1.427499368 1.439411094 1.473321871 1.421223796 1.39775139 1.43764607 1.453741817 1.44256098 1.387982632 390615898 amyA Mycobacterium chubuense NBB4 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium chubuense; 1.18653314 1.159317017 1.161840356 1.161960352 1.134207371 1.186640627 1.1462587 1.157906363 1.143037342 1.170669891 1.14836516 1.180685879 1.128248116 1.143464351 1.118571898 1.146183698 1.162771192 1.179479117 118439049 tktA Stappia aggregata IAM 12614 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 0.877110878 0.939589605 0.869273634 0.865620875 0.851552293 0.865672879 0.868467444 0.843032033 0.815541303 0.809385123 0.864748619 0.85428802 0.894992353 46917326 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.989823518 1.009150215 0.996594966 0.983902687 0.929695163 0.976300667 0.921125713 0.936200923 0.995926794 1.041791634 0.942506127 0.995692163 0.92688711 0.924021162 0.947454661 0.935764649 1.017097387 1.00300772 384920723 one_ring_23diox Citreicella sp. 357 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Citreicella; 0.995711088 1.032653811 0.963137113 1.034452775 1.031211803 1.052830959 0.995637732 1.026509319 0.99242406 1.010602924 0.9814806 1.014801078 1.037220326 1.017082639 0.982418251 1.009962809 1.044899959 1.013607915 389736917 amyA Rhodanobacter sp. 115 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Rhodanobacter; 1.175514961 1.197684215 1.131259258 1.169220153 1.129992693 1.172244021 1.165507939 1.154967475 1.156797007 1.157629144 1.118480023 1.140918567 1.11325504 1.118589065 1.209533478 1.139115279 1.143133672 1.177254144 212661539 ara Bifidobacterium catenulatum DSM 16992 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium catenulatum; 0.831884959 0.812506331 0.813742877 0.80562219 0.803261067 0.814668186 111018855 pcpe Rhodococcus sp. RHA1 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 0.814630714 0.815987171 0.810305723 261356260 ara Verticillium albo-atrum VaMs.102 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticilium;species:Verticillium albo-atrum; 1.271734614 1.261326011 1.260717467 1.246763389 1.25303615 1.262996882 1.221318028 1.227349225 1.274558438 1.241984779 1.232952436 1.266466056 1.212745443 1.219506981 1.17559703 1.21702366 1.264900438 1.256928635 77378641 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.900310604 0.899418362 0.882323126 0.866730017 0.905996328 0.911929566 0.848615656 0.871349242 0.881172084 0.865284182 0.89702517 0.914338147 0.886955797 0.860763211 0.851749637 0.857936404 0.893617821 0.891839744 422314487 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.902570825 0.938340819 0.867789467 0.875426265 0.894388922 0.923010837 0.859799802 0.867359528 0.881221669 0.891902511 0.879886289 0.864010509 0.884785096 0.93146008 0.906354172 0.843276214 0.907690647 0.930121513 114227416 ppx Alkalilimnicola ehrlichei MLHE-1 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Alkalilimnicola;species:Alkalilimnicola ehrlichii; 1.042958373 1.055700908 1.049023213 1.077295319 1.033702281 1.077776504 1.03659771 1.049949452 1.056730961 1.049906082 1.050964569 1.05495145 0.99602915 1.02273572 1.01742264 1.022472701 1.04634003 1.03593252 225001289 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.252019354 1.228465066 1.193160555 1.241632934 1.18207406 1.220141522 1.197373214 1.199689746 1.216480971 1.190067831 1.179462841 1.223507658 1.166493735 1.147547228 1.115028515 1.165501577 1.227350887 1.178880197 367038109 ara Thielavia terrestris NRRL 8126 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Thielavia;species:Thielavia terrestris; 1.758583743 1.675022359 1.686272435 1.663458112 1.662478949 1.683196187 1.651739211 1.643182262 1.703683008 1.648909112 1.666089926 1.686368732 1.616930992 1.618339876 1.625240872 1.618533025 1.685829336 1.669134173 229473018 dsrB uncultured bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.069550474 1.114856021 1.043443296 1.096327973 0.991715454 1.069045257 1.033933381 1.063218141 1.049690842 1.056518638 1.001906951 1.085562193 0.972635792 1.005130659 0.931561598 1.007668323 1.052295949 1.07116783 332717200 cmci Agrobacterium sp. H13-3 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium; 0.772790144 0.801281232 0.751424752 0.823949613 148260300 FBPase Acidiphilium cryptum JF-5 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acidiphilium;species:Acidiphilium cryptum; 0.813506514 0.82286834 0.840682336 0.807474072 0.803803855 0.781880181 0.819773618 0.835383709 0.866491974 0.808961809 219858278 amyA Arthrobacter chlorophenolicus A6 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 0.961314477 0.96297719 0.96429805 0.981885104 1.012462615 0.98445125 0.989927099 0.966903664 1.002219627 0.978803944 0.970341979 0.98918134 0.928389306 0.910381258 0.910484975 0.932413681 0.995894728 0.984958037 91686245 vana Burkholderia xenovorans LB400 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 0.973587398 0.992288387 1.012896359 1.028985687 1.003965886 0.979508444 0.922644009 0.967327375 0.97689671 0.965315124 0.961713078 0.981211126 0.959057611 0.986803785 0.955667573 0.949978545 0.989400011 0.980245539 55978122 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.118750769 1.12722119 1.138250726 1.09454326 1.067708788 1.122290053 1.062572538 1.110216011 1.100512842 1.11286346 1.1769469 1.109450245 1.049473617 1.093068213 1.172291353 1.083312366 1.116147915 1.147249155 354582849 amyA Paenibacillus lactis 154 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus lactis; 1.202004787 1.177666897 1.186725208 1.205866143 1.152415097 1.169479245 1.144921578 1.15701392 1.170053634 1.155909594 1.169022313 1.190388752 1.159552716 1.130217517 1.150470908 1.165316575 1.204688164 1.157620936 330469679 xylj Verrucosispora maris AB-18-032 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Verrucosispora;species:Verrucosispora maris; 0.989779771 1.027458848 0.90687549 0.995510555 0.944010346 1.002572816 0.924683325 0.974514442 0.997447387 0.971496899 0.963672547 0.959512149 0.895232915 0.946298915 0.901083361 0.887963999 0.995911725 1.005388576 302336462 ppx Olsenella uli DSM 7084 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Olsenella;species:Olsenella uli; 0.899480429 0.842802014 0.915193649 0.825610758 0.870686562 0.901287462 0.903230456 0.888795668 0.84347192 0.924415684 0.935190083 0.909706046 0.838358331 0.831329076 0.837672243 0.877814265 0.883997521 326385577 bphd Novosphingobium nitrogenifigens DSM 19370 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium nitrogenifigens; 0.924265863 0.924221778 0.914231641 0.936597157 0.903654987 0.895131969 0.859796309 0.83483049 0.91238086 0.924252998 0.880732372 0.922511182 0.836666171 0.867919395 0.846017605 0.827912242 0.943634378 0.933180256 46917296 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.8765643 0.79445119 0.827978564 0.884172645 0.841706417 0.796667938 0.819251972 0.873268771 0.890527278 0.876175855 0.922090978 0.809029789 0.827923352 0.84030926 149927838 dehh109 Limnobacter sp. MED105 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Limnobacter; 0.894136626 0.923103973 0.949171599 0.899776889 0.95603815 0.936208194 0.949331845 0.935758911 0.952389331 0.916060973 0.89481018 0.925962821 0.944231753 0.970495212 0.899412855 0.919158669 0.951067484 0.986570619 10956961 bend Novosphingobium aromaticivorans Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 0.962383154 0.888013823 0.97092915 0.97586704 0.892585613 0.916066032 0.937585721 0.94660298 0.954848098 0.937127221 0.920367595 0.962670493 0.896787805 0.899486174 0.884493896 0.934388168 0.958170979 0.893126575 213156817 urec Acinetobacter baumannii AB0057 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter baumannii; 0.876325021 0.905625346 0.912141961 0.905097681 0.920301879 0.879377782 0.923536308 0.944552834 0.867404609 0.896465416 0.905032717 0.902375573 0.875635479 0.901001423 0.875159361 0.88849809 0.85470943 0.886637842 405379258 cmci Rhizobium sp. CF142 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 1.066164156 0.998103568 0.972753426 0.998509757 0.947295748 0.954300839 0.936767345 1.037766429 1.036708957 0.925052471 0.936514062 1.011343957 0.955317291 0.909831278 0.904711441 0.958318724 1.035199531 1.00647676 313153431 ppx Oceanithermus profundus DSM 14977 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Oceanithermus;species:Oceanithermus profundus; 0.851248453 0.959379808 0.900627049 0.855063745 0.817859789 0.843691436 0.838535746 0.80398155 0.813811293 0.829372505 0.837178577 0.852091765 0.872754164 163792890 pcpb alpha proteobacterium BAL199 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 1.319485287 1.234162447 1.212176321 1.210086643 1.192690753 1.187915655 1.15499799 1.260925103 1.273544948 1.165488231 1.171777833 1.24220206 1.172604982 1.152577039 1.175237101 1.14546197 1.233308277 1.220564712 229819788 acetylglucosaminidase Beutenbergia cavernae DSM 12333 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Beutenbergiaceae;genus:Beutenbergia;species:Beutenbergia cavernae; 1.284466795 1.266852723 1.252283919 1.281147477 1.250069244 1.283690304 1.208618885 1.246044262 1.257732279 1.250569568 1.233851874 1.269700901 1.238622733 1.240584767 1.197068317 1.238507604 1.285249586 1.277174516 297147320 amyA Streptomyces sviceus ATCC 29083 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 0.791154412 0.834547741 0.810551301 0.872398731 0.857782192 0.858755843 0.824413399 0.855643069 0.806951991 0.851016771 0.841336267 0.853246262 0.801504702 0.833006354 398992676 mult_ring_12DiOx Pseudomonas sp. GM21 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 1.124208021 1.115744716 1.083044701 1.147373538 1.113085873 1.097964884 1.105536707 1.152673498 1.115966666 1.081330605 1.081642184 1.15852912 1.081178559 1.083155261 1.11650399 1.09560271 1.117805665 1.072450772 365842914 nifh Flavonifractor plautii ATCC 29863 Nitrogen Nitrogen fixation NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;species:Flavonifractor plautii; 1.052791227 1.02946149 1.029181802 1.111121941 1.038535508 1.056324922 1.057545121 1.105825941 1.073124124 1.023307174 1.016860182 1.070593405 1.03276997 0.978775117 1.033934055 1.073690578 1.060150765 1.034901053 90417931 PRI Aurantimonas manganoxydans SI85-9A1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Aurantimonas;species:Aurantimonas manganoxydans; 0.857322815 0.791146649 0.793853401 0.819326765 88696577 endochitinase Bionectria ochroleuca Carbon Cycling Carbon degradation Chitin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Bionectriaceae;genus:Bionectria; 0.860312062 0.898931623 0.82963928 0.885059466 0.853276355 0.851394284 0.825261492 0.884925275 0.900183341 0.865527865 0.802831111 0.842429893 0.836634988 0.837413486 0.879573806 209171678 dsra Candidatus Thiobios zoothamnicoli Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Candidatus Thiobios; 1.138345234 1.154957991 1.13867933 1.166292578 1.067163023 1.131682875 1.007327511 0.870822188 1.121770035 1.164784644 1.133865844 1.182050316 1.094516615 1.130218997 1.016281194 1.047764175 1.101242977 1.131849119 319927907 amyA Terriglobus saanensis SP1PR4 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Terriglobus;species:Terriglobus saanensis; 1.259948582 1.236574772 1.221651736 1.259382607 1.242759728 1.279917116 1.246626061 1.243912298 1.213416354 1.214385635 1.254611751 1.235079611 1.164011938 1.177769645 1.154556991 1.181826021 1.239248157 1.24920392 111182171 protease_serine_fungi Chaetomium thermophilum Carbon Cycling Carbon degradation protein superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium; 1.33263892 1.312737333 1.289945676 1.312345893 1.288068166 1.313699604 1.257148273 1.273719255 1.289568625 1.263022981 1.308021056 1.301885466 1.253062515 1.240372377 1.150926017 1.237629071 1.31148517 1.287042621 283781056 ccmL Pirellula staleyi DSM 6068 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Pirellula;species:Pirellula staleyi; 1.189786575 1.163172922 1.127889502 1.161519852 1.122062356 1.18432621 1.111153577 1.114248655 1.125212435 1.134006215 1.119659376 1.138267734 1.115169284 1.108597018 1.086712759 1.126859102 1.158276522 1.151305284 383790002 amyA Spirochaeta africana DSM 8902 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Spirochaeta;species:Spirochaeta africana; 0.85392101 0.88093553 0.804334208 0.855926553 0.851839829 0.859651266 0.853206119 0.838975483 0.857572578 0.869420648 0.810755933 0.856342199 0.782075483 0.835140071 0.780161248 0.806987558 0.836519699 0.8425291 93353565 phn Cupriavidus metallidurans CH34 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 0.888492571 0.900467614 0.894731344 0.898760005 0.906087033 0.868364423 0.903532049 0.844689031 0.892731599 0.871653137 0.869167859 0.899427718 0.889054155 0.796928878 0.887086551 0.871267408 0.937436496 0.901917323 114737563 limeh Hyphomonas neptunium ATCC 15444 Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Hyphomonas;species:Hyphomonas neptunium; 0.819081196 0.801864573 302915188 protease_serine_fungi Nectria haematococca mpVI 77-13-4 Carbon Cycling Carbon degradation protein superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Nectria;species:Nectria haematococca; 0.95079964 1.014335878 0.945002199 0.99832643 0.926151489 0.952673311 0.950586311 0.941853453 0.961830381 0.939643989 0.916571141 0.981055807 0.944798164 0.939680726 0.940203555 0.9328935 0.977513248 0.944116947 296140633 amyA Tsukamurella paurometabola DSM 20162 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Tsukamurellaceae;genus:Tsukamurella;species:Tsukamurella paurometabola; 0.807791225 0.839297675 0.812334599 0.825093706 0.864061595 0.842348234 0.84514128 0.857262866 0.799688841 0.845141503 0.875862937 297548667 xyla Ktedonobacter racemifer DSM 44963 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Chloroflexi;class:Ktedonobacteria;order:Ktedonobacterales;family:Ktedonobacteraceae;genus:Ktedonobacter;species:Ktedonobacter racemifer; 0.88409739 0.874101683 0.904824926 0.954800269 0.994529685 0.911124796 0.972997288 0.931785415 0.958416356 0.884537043 0.909115574 0.962813246 0.894767258 0.921642827 0.919938564 0.963507998 0.909993496 0.885179444 169793518 napa uncultured bacterium Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria; 0.970144578 0.951528001 0.931324394 0.970792012 0.893243279 0.936354538 0.899148555 0.911054304 0.959257491 0.929155208 0.960786529 0.952356678 0.884135251 0.915808149 0.871304721 0.915213731 0.969045873 0.958114092 643641 tfth Burkholderia cepacia Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 0.951919263 0.955167294 0.885437882 0.971282199 0.945782084 0.873149958 0.922135447 0.915901015 0.902473984 0.897599228 0.883503701 0.962188511 0.906906863 0.855855597 0.885238311 0.867649414 0.885411417 0.927980422 154251548 PRI Parvibaculum lavamentivorans DS-1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhodobiaceae;genus:Parvibaculum;species:Parvibaculum lavamentivorans; 0.993865081 0.976526422 0.992275554 0.98323039 1.001758496 1.006338308 0.985318971 0.974320872 0.991537672 0.994315807 0.960324985 0.988108356 0.950798934 0.895307222 0.906157328 0.94919953 0.993622357 1.008352749 3142158 scnabc Thiobacillus thioparus Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus; 0.874212196 0.863274493 0.914225102 0.911922007 0.868904584 0.828356197 0.869445023 0.8567905 0.869521787 0.80563108 0.875487064 0.838967576 0.870128021 0.903374231 84778317 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.129868508 1.032360883 1.187138771 1.274211939 1.048500508 1.033717881 1.006957848 1.079712309 1.023900472 0.987457894 0.997219661 1.031686338 1.045559717 0.946828972 0.900247882 1.034173166 1.003563528 1.041955409 99083009 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.976044421 0.926542234 0.968110342 0.964583832 0.865682666 0.927026996 0.85347836 0.931499579 0.964910364 0.918910373 0.919969748 0.926868305 0.912945925 0.941098694 0.853910085 0.889063468 0.970050008 0.942391786 385883560 amyA Micromonospora lupini str. Lupac 08 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Micromonospora;species:Micromonospora lupini; 1.14345394 1.12937784 1.056355296 1.136178472 1.050465871 1.137769195 1.043576022 1.093814024 1.106771503 1.089963144 1.061977999 1.082232711 1.040211862 1.096506167 1.044561848 1.094559789 1.129743912 1.106129645 148273981 amyA Clavibacter michiganensis subsp. michiganensis NCPPB 382 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Clavibacter;species:Clavibacter michiganensis; 1.165986539 1.20254864 1.157350172 1.169064449 1.168080218 1.230004619 1.119689531 1.18301534 1.113969284 1.147678208 1.120614809 1.175768251 1.12427151 1.172222995 1.197158243 1.122931754 1.156137081 1.19958409 404215802 pcag Gordonia sp. KTR9 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia; 1.327603526 1.32596214 1.262095261 1.262925031 1.275542671 1.317255624 1.241479331 1.273268067 1.250991776 1.261445639 1.249644868 1.252438156 1.276503099 1.245166421 1.233062892 1.250264165 1.293636543 1.28387204 214044973 tktA Roseobacter sp. GAI101 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 0.977981781 0.922704121 0.920194673 1.004543667 0.918412116 0.938585889 0.951605631 1.018081273 1.015488458 0.972583801 0.900746832 0.963788755 0.920037034 0.896906306 0.854649163 0.96146437 0.94818936 0.967235254 167594197 pmoa uncultured bacterium Carbon Cycling Methane Methane oxidation superkingdom:Bacteria; 0.92436662 0.88031393 0.970185896 0.880484242 0.976089567 0.98991496 0.94854601 0.933571337 0.909523435 0.890843066 0.887844778 0.885009772 0.915660461 0.862719669 0.815382038 0.897334039 0.905357804 0.910850837 88702641 nosz uncultured soil bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.091497376 1.061904486 1.030330674 1.084319596 1.064318939 1.077883783 1.030775833 1.05651067 1.067660808 1.043323354 1.060162617 1.063836486 1.032705727 1.039138354 1.013473922 1.043245877 1.054918084 1.045968683 217977649 xylg Methylocella silvestris BL2 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Methylocella;species:Methylocella silvestris; 1.180633672 1.10208195 1.115227175 1.143360462 1.105028609 1.084536572 1.087911785 1.135596257 1.130669107 1.112050527 1.102076038 1.124905307 1.098967469 1.084411752 1.068623807 1.050092808 1.096561792 1.100162643 3929478 catechol_b Comamonas sp. JS765 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas; 0.898678848 0.905399568 0.926309807 0.897370242 0.914466113 0.897061051 0.860685737 0.892282626 0.928743318 0.897305047 0.883227577 0.916637057 0.874461324 0.889303381 0.885970244 0.904793803 0.89299954 0.900920734 226941238 terc Laribacter hongkongensis HLHK9 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Laribacter;species:Laribacter hongkongensis; 0.976340853 0.961372446 0.967100257 0.975597077 0.947982945 1.008826895 0.956061387 0.921896745 0.954435543 0.973652512 0.989224082 0.957192633 0.960184486 0.93166083 0.952992667 0.908651891 1.011330755 0.955263638 381357095 ben_bcla Bradyrhizobium sp. S23321 virulence NA NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.833238586 0.775072361 390454736 amyA Paenibacillus peoriae KCTC 3763 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus peoriae; 0.941714003 0.819238822 0.838229888 0.870424861 0.94122735 0.831087878 0.821507992 0.878303941 0.803696759 0.832949472 0.826689321 0.927423288 338738726 exaa(moxf) Hyphomicrobium sp. MC1 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium; 1.250834671 1.218306948 1.229066817 1.232072366 1.24219481 1.246039749 1.196427922 1.196232542 1.223705535 1.224518549 1.248121345 1.205337865 1.216936359 1.190480197 1.218647531 1.197487161 1.230338352 1.230620372 42561627 pcpe Sphingobium sp. UG30 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium; 1.058332264 1.06278712 1.046837864 1.031791068 1.061336681 1.054415542 0.983073052 0.999024448 1.007655389 0.999651055 1.012381156 1.032770827 1.041240743 0.993796676 0.988227373 1.009495015 1.089584624 1.072048546 52208951 cueo Burkholderia pseudomallei K96243 Metal Homeostasis Copper Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia pseudomallei; 1.040282361 0.983549206 1.005197121 0.997425466 1.00648251 0.997653557 0.993956971 0.979126631 1.000907259 0.986322387 0.989628845 1.032695694 0.97714311 0.949308252 0.955636969 0.982679534 0.991886438 0.984301389 37726834 dsra uncultured prokaryote Sulfur sulfite reduction NA 0.83403676 0.791878476 0.803227908 0.783695023 0.82540846 0.825804057 0.864241004 0.820725915 0.792761933 0.83697725 0.826326172 0.776880359 407012 alpha_galactosidase_fungi Lachancea cidri Carbon Cycling Carbon degradation Other superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Saccharomycetaceae;genus:Lachancea; 0.849438385 0.866411739 0.820940503 0.884880805 0.906187004 0.839532028 0.90488712 0.855643923 0.890786326 0.870039012 1.07141052 0.893637981 0.854076306 0.811790986 0.853099209 0.849420894 0.911938824 163759176 ppx Hoeflea phototrophica DFL-43 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Hoeflea;species:Hoeflea phototrophica; 0.803381292 0.82565637 0.81233663 0.82579889 0.818606078 0.856023128 86357410 nasa Rhizobium etli CFN 42 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 0.933636338 0.937407894 0.909026044 0.950289846 0.881223269 0.905318811 0.889030598 0.914611556 0.93146723 0.912841399 0.899150127 0.907556041 0.900244258 0.883445863 0.828133062 0.905647033 0.946506824 0.937758679 164455762 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 1.12750466 1.170572413 1.125951874 1.135580865 1.142251601 1.127349994 1.156786933 1.168244491 1.161490611 1.137914894 1.12939673 1.119656693 1.093544444 1.093768403 1.058979035 1.092615194 1.135154739 1.156114036 116633900 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.968971112 0.866225924 0.889821663 0.895919702 0.886449232 0.872509121 0.915317162 0.898970132 0.913792557 0.858429323 0.863809586 0.856109274 0.842012101 0.816446095 0.828279987 1.344254917 0.884344315 395647599 bphF1 Pseudomonas extremaustralis 14-3 substr. 14-3b Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas extremaustralis; 1.052463686 1.016835452 1.024234392 1.0269432 1.006306526 1.024853788 0.980891592 1.015314299 0.991081124 0.975796758 0.943038681 0.994844229 0.975335218 0.954296482 0.929972411 0.970574594 1.034774872 0.977246515 326423835 cysJ Vibrio vulnificus CMCP6 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio vulnificus; 1.25900947 1.248197136 1.255727842 1.256367976 1.218098663 1.25893822 1.217745919 1.232082861 1.22060866 1.214584017 1.255570288 1.228107768 1.210068121 1.204492269 1.19313051 1.200333931 1.248971896 1.231480841 348594870 fthfs Oscillibacter valericigenes Sjm18-20 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Oscillospiraceae;genus:Oscillibacter;species:Oscillibacter valericigenes; 0.90398501 0.897310103 0.867096164 0.891529389 0.856601426 0.863596539 0.85977707 0.884706409 0.908820043 0.900620051 0.837521612 0.9125946 0.830649139 0.869752098 0.825858942 0.871928103 0.891439998 0.896758488 39648482 aln Rhodopseudomonas palustris CGA009 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 0.810191073 0.800774532 0.868819425 0.871614234 0.829567881 0.826073086 0.881623748 0.828300381 0.861401259 0.828116045 0.841205629 238761392 CsoS1_CcmK Yersinia kristensenii ATCC 33638 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia kristensenii; 0.814456779 0.829990084 0.834265793 0.830911731 0.839047222 0.793695001 0.822761192 0.849755733 0.822886862 0.822076786 0.817960738 0.832678255 0.821579496 0.868206733 119225946 catechol_b uncultured bacterium Organic Remediation Aromatics Other aromatics superkingdom:Bacteria; 0.902892968 0.974025274 0.958353415 0.969589455 0.938730068 0.913949109 0.927348454 0.905259703 0.901426709 0.944261339 0.936067431 0.920892182 0.964885507 0.898975254 0.889285873 0.892970045 0.923193475 0.90121714 258577163 pcpe Uncinocarpus reesii 1704 Organic Remediation Herbicides related compound NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Onygenaceae;genus:Uncinocarpus;species:Uncinocarpus reesii; 0.873457405 0.7975486 0.841075258 0.780923995 0.939637241 0.832185384 0.929830476 0.767268208 0.923095085 0.895647348 0.788648657 0.848081392 0.98934786 0.866545394 302890999 rgl Nectria haematococca mpVI 77-13-4 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Fusarium;species:Nectria haematococca; 0.942418808 0.971179588 0.885309976 0.893652491 0.873116489 0.920433339 0.858466047 0.820148008 0.91548067 0.909103984 0.887687228 0.919792455 0.84924547 0.916675349 0.876361619 0.971661457 0.923421807 372471961 ccmL Opitutaceae bacterium TAV5 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 1.072844008 1.088948565 1.071108707 1.062637749 1.087524896 1.067520322 1.086180383 1.074892763 1.042086124 1.06607264 1.088004577 1.07899398 1.03789894 1.036674163 1.011393298 1.030942053 1.05675499 1.065934206 375101659 terc Saccharomonospora cyanea NA-134 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora cyanea; 1.037639371 1.038267733 1.015485643 1.00605183 1.050205151 1.053008768 0.999950814 1.007633217 0.998064389 1.001145365 1.003509895 1.001239647 1.017232874 0.992728651 1.00060665 1.021171683 1.046229368 1.05408941 165880077 exoglucanase uncultured fungus Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi; 0.834511396 0.869459533 0.860221247 0.849151434 0.852455762 0.819236895 0.822612953 0.860762854 0.915517311 0.811617099 0.782020783 0.876609944 0.859431456 0.871129846 379257230 pcag Saccharomonospora azurea NA-128 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora azurea; 0.894924774 0.865485714 0.819378789 0.886033767 0.853529379 0.884550669 0.86005964 0.899919134 0.842541406 0.83967018 0.851244402 0.828786462 0.903422373 0.830793287 284030708 amyA Kribbella flavida DSM 17836 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Kribbella;species:Kribbella flavida; 1.136227629 1.146052066 1.133867654 1.105389477 1.142748726 1.136248227 1.103608172 1.103202303 1.101718533 1.107879766 1.131910379 1.127828662 1.12403973 1.108528992 1.107784405 1.110516967 1.14844139 1.126336728 145319978 urec Enterobacter sp. 638 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 0.794524746 0.838464036 0.819197083 0.846153157 0.835706323 0.840151782 0.814052518 0.806504257 0.806380761 0.825422759 0.79775472 0.835668831 0.847240985 119391433 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.248204782 1.260081378 1.224872425 1.213382831 1.188643547 1.229943023 1.159753832 1.151361385 1.175179625 1.19647297 1.199598399 1.183569239 1.196912076 1.169426144 1.164187031 1.177897271 1.237179517 1.213757961 339498735 amyA Spirochaeta caldaria DSM 7334 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema caldaria; 0.84778305 0.891655594 0.83829558 0.853404248 0.803746813 0.811112116 0.8498844 0.824942191 0.81329487 0.82200155 0.834435094 0.869198648 386402302 amyA Bradyrhizobium sp. WSM1253 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.907974796 0.821753642 0.873187192 0.865601428 0.834748678 0.854330233 0.83392517 0.876417222 0.873740994 0.881706027 0.879399078 0.817019553 0.895150306 0.85749841 0.839598524 0.878396617 0.83743487 288550556 ppx Enterobacter cancerogenus ATCC 35316 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter cancerogenus; 0.900207021 0.990038691 0.933898997 0.950748976 0.952486213 0.967761666 0.910500619 0.920010932 0.934684126 0.958258845 0.863995346 0.952692995 0.957211787 0.942109602 0.893551523 0.946005143 0.961231024 0.953706842 270298544 fthfs uncultured rumen bacterium Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria; 0.896945237 0.936639221 0.901983722 0.956216274 0.916790505 0.910493813 0.919631613 0.934388209 0.88808793 0.891701344 0.904936373 0.941897638 0.935648622 0.871419432 0.925780568 0.909721368 0.928637338 0.879211637 336030302 FBP_aldolase Mesorhizobium opportunistum WSM2075 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium opportunistum; 0.995450499 0.943657381 0.89728235 0.98681854 0.869862378 0.955036796 0.912592204 0.971523345 0.953661502 0.930090723 0.927693871 0.950043004 0.876690474 0.894791284 0.868601525 0.908102884 0.954175007 0.948583999 332663163 ara Haliscomenobacter hydrossis DSM 1100 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Saprospiraceae;genus:Haliscomenobacter;species:Haliscomenobacter hydrossis; 0.864687595 0.899260188 0.820848062 0.824157094 0.899556452 0.912852974 0.84695627 0.873173735 0.998497631 0.838045353 212712965 nfsb_2 Providencia alcalifaciens DSM 30120 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia alcalifaciens; 0.871736101 0.845959424 0.916579812 0.929032781 0.892979427 0.843222568 0.870894681 0.812343137 0.938011868 0.900143188 0.866426457 0.90388765 0.883271261 0.881836511 0.895602739 0.850056142 0.933481611 0.885529949 210627070 cellobiase Collinsella intestinalis DSM 13280 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Collinsella;species:Collinsella intestinalis; 0.939089367 0.952410023 0.929105248 0.961069357 0.941466151 0.965373205 0.901766424 0.986313963 0.935550747 0.959534382 0.914651862 0.969345246 0.939833714 0.931613515 0.926809211 0.914613523 0.952042586 0.957744004 56315157 arra Aromatoleum aromaticum EbN1 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 1.177247278 1.16466919 1.132366374 1.161920811 1.109850738 1.142552667 1.117060913 1.124413413 1.140196869 1.103847749 1.122460448 1.116096346 1.104738025 1.100315519 1.081000675 1.087580922 1.136905546 1.113735184 294816405 endoglucanase Streptomyces clavuligerus ATCC 27064 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces clavuligerus; 1.289624876 1.273100767 1.26564037 1.285247613 1.244218073 1.270172133 1.23059382 1.260613262 1.259300496 1.244973989 1.235783497 1.251667681 1.232475958 1.224190526 1.227967162 1.25879231 1.280365399 1.2410863 256423518 alginase Chitinophaga pinensis DSM 2588 Carbon Cycling Carbon degradation Alginate superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;genus:Chitinophaga;species:Chitinophaga pinensis; 0.920945706 0.994167691 0.837651427 0.851092498 0.949461712 0.956103115 0.940837184 0.979908078 1.033286755 1.001316495 1.066352765 0.941007615 86750693 poba Rhodopseudomonas palustris HaA2 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 0.962129566 0.965994097 0.955193321 0.927657596 0.976925212 0.968567241 0.948339703 0.955128379 0.94923632 0.973418045 0.969843284 0.976313712 0.949339721 0.935579952 0.917476663 0.918631069 0.96870152 0.959714396 300728474 RgaE Prevotella bryantii B14 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella bryantii; 1.133592122 1.109565615 1.116545739 1.175576182 1.081429848 1.130607045 1.084428446 1.127959363 1.1554056 1.08473891 1.076741529 1.125528283 1.056245299 1.083062175 1.049792244 1.110060909 1.125152137 1.110068691 149202281 dehh109 Roseovarius sp. TM1035 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 0.9047754 0.995536523 0.907989946 0.926800422 0.957115017 0.864626269 0.908230074 0.891663423 0.946620957 0.905553668 1.009864593 0.913641117 0.849778073 0.851569028 0.882294354 0.858394467 0.942672464 0.927439473 104779928 atzb Pseudomonas entomophila L48 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas entomophila; 1.122202859 1.100750648 1.08107366 1.100203663 1.080615391 1.110025993 1.063920086 1.090129149 1.106580986 1.096824841 1.105920266 1.078685876 1.057187657 1.109609348 1.089499227 171684047 cutinase Podospora anserina S mat+ Carbon Cycling Carbon degradation Cutin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Lasiosphaeriaceae;genus:Podospora;species:Podospora anserina; 1.024074413 1.074276698 1.050229924 1.049027788 1.059774564 1.082730123 1.040997701 1.025267442 1.01598333 1.070896118 1.04820529 1.062295573 1.049376264 1.044331248 1.024873181 1.058292928 1.050686474 1.06067434 121705978 cellobiase Aspergillus clavatus NRRL 1 Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 0.789143728 0.846118146 148474704 nrfa uncultured bacterium Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria; 0.774997718 0.900223492 0.824537752 0.825776493 0.857907474 0.830159743 0.824227284 0.830673145 0.81201348 0.816792441 0.85096755 0.815869405 0.869018704 0.878506457 150027321 dehh109 Sinorhizobium medicae WSM419 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 0.90999212 0.946835624 0.952219362 0.944418987 0.893267576 0.90376698 0.931817154 0.925347036 0.900658206 0.920256481 0.931033545 0.930374937 0.925592511 0.912884024 0.902580848 0.941649713 0.927297533 0.933361636 256423272 tehb Chitinophaga pinensis DSM 2588 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;genus:Chitinophaga;species:Chitinophaga pinensis; 0.832716576 0.841964215 0.827517738 0.825112955 0.848775436 0.807437757 0.869176273 0.83667386 0.857333263 0.795301099 0.854498232 0.819453948 0.832301599 0.821090919 323470179 fthfs Arthrobacter phenanthrenivorans Sphe3 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter phenanthrenivorans; 1.200652098 1.094503815 1.112860584 1.161275566 1.076944955 1.100586757 1.103124204 1.091610564 1.057395698 1.090956039 1.065230857 1.097854532 1.069125915 1.078944668 0.96077292 1.052409974 1.063482874 1.054436597 319947648 mer Dietzia cinnamea P4 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dietziaceae;genus:Dietzia;species:Dietzia cinnamea; 0.849903551 0.846506519 0.824533377 0.829836095 0.855298259 0.860079549 0.853138544 0.866192811 192897600 ppk uncultured bacterium Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria; 0.837279515 0.866857934 0.829682551 0.828651667 0.844826989 0.801161251 0.82075341 0.864023727 169117862 mer uncultured organism Metal Homeostasis Mercury Detoxification 1.349125029 1.32747233 1.34171317 1.320395355 1.303717451 1.354329316 1.316655442 1.330419996 1.333055992 1.329459857 1.305084326 1.316051387 1.300009671 1.271387446 1.262279859 1.309292498 1.337344852 1.318996547 261285605 alginase Paenibacillus sp. Y412MC10 Carbon Cycling Carbon degradation Alginate superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 0.789042031 0.939841418 0.820734345 0.854502921 0.99448175 0.905522915 0.784216039 0.986355089 0.860676474 0.873197905 0.943634788 0.914762319 0.882712852 0.895267214 0.864393533 0.954866174 357014154 urec Paenibacillus elgii B69 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus elgii; 0.86865542 0.917252184 0.851244883 0.879870768 0.804721856 0.865318687 0.824104673 0.856759202 0.900462025 0.861432279 0.861284969 0.863380508 0.773951015 0.86846925 0.861801024 0.907066664 295412940 mer Kyrpidia tusciae DSM 2912 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Kyrpidia;species:Kyrpidia tusciae; 1.250799206 1.272955354 1.220360093 1.206899092 1.207917022 1.236277316 1.186902275 1.1881052 1.207819108 1.198303936 1.208999042 1.216984439 1.172570874 1.171056511 1.173756936 1.170795499 1.222544577 1.240072836 126665532 linb Marinobacter sp. ELB17 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter; 0.767851921 0.809415317 0.796434061 0.81713137 126316318 sdsa Pseudomonas putida GB-1 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 1.14590098 1.127767805 1.104982802 1.137674155 1.106559939 1.125584576 1.092941667 1.146001057 1.126688179 1.096815896 1.119927809 1.125657477 1.09158565 1.059339601 1.055321144 1.054467037 1.14763691 1.107348626 119955331 nhh Mycobacterium vanbaalenii PYR-1 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 1.27418654 1.27799312 1.238526329 1.280445526 1.244794641 1.286485505 1.222383636 1.254934503 1.2353206 1.216924415 1.215266419 1.234979647 1.226130249 1.214990308 1.159484999 1.227896231 1.253081202 1.256143958 380738104 ppx Pantoea sp. Sc1 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 1.06099675 1.074791884 1.016774768 1.060028453 1.045642375 1.020360941 1.04138776 1.031548025 1.052045965 0.99811655 1.031995617 1.012494569 1.008562112 0.971761124 0.963696799 0.98775775 1.047546466 1.003054854 33338094 phytase Selenomonas ruminantium Phosphorus Phytic acid hydrolysis NA superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Selenomonas; 0.946206759 0.959225373 0.916022648 0.914537538 0.924867451 0.919302016 0.897335307 0.875778965 0.873941522 0.870756474 0.896664447 0.889596859 0.857846883 0.88073332 0.868659322 0.880584426 0.958684201 0.931254956 22450003 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.884860544 0.908676974 0.874956412 0.839465138 0.86563188 0.890881618 0.847908563 0.821830644 0.889965775 0.85643858 0.84580713 0.838980463 0.872410055 0.831778783 0.862695775 0.859541523 0.906654976 289671278 pme Xanthomonas campestris pv. musacearum NCPPB 4381 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas campestris; 1.207930578 1.21474941 1.195685145 1.194580647 1.200145198 1.241842552 1.185075013 1.182410679 1.175594637 1.184128622 1.198354343 1.18974184 1.184003163 1.182993996 1.178015196 1.189323644 1.20337837 1.20628328 7592889 rubisco uncultured deep-sea autotrophic bacterium ORII-7 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria; 0.942130673 0.959559071 0.938709174 0.903854163 0.994665575 1.001527789 0.967488742 0.894833962 0.921417236 0.960704205 0.926238628 0.892339378 0.894571591 0.917332305 0.871725891 0.900565076 0.925216989 0.938873012 115443316 axe Aspergillus terreus NIH2624 Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 1.084481922 1.12244981 1.083366594 1.097823847 1.073051127 1.077138002 1.086364333 1.092724151 1.088612058 1.06813668 1.062017068 1.06643097 1.074627904 1.026415382 1.07927373 1.052505089 1.100911498 1.042446749 372267684 arylest Alteromonas sp. S89 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Microbulbifer;species:Microbulbifer agarilyticus; 1.240457789 1.191024194 1.21829528 1.23653052 1.215842535 1.169886388 1.158186795 1.195287008 1.22988716 1.204723651 1.204162601 1.274124978 1.192662236 1.192437115 1.206876041 1.193667917 1.207639249 1.184950933 149144178 nifh Roseovarius sp. TM1035 Nitrogen Nitrogen fixation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 0.835075407 0.905848071 0.825471265 0.860039492 0.878722037 0.877169871 0.829324457 0.911439081 0.88533855 0.94094163 0.899907343 0.873295542 0.872476006 0.885617505 0.832810598 0.813095631 0.84055589 0.863312047 85823677 poba Roseobacter sp. MED193 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 0.860654195 0.834474191 0.869500385 0.896292983 0.825310239 0.822179119 0.811571257 0.84100661 0.871870706 0.833970473 421953198 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.030722631 0.95242656 0.918682557 0.812159222 0.926656819 0.980429893 0.845233235 0.878617621 0.847086027 1.030941633 1.124915642 1.141412502 0.858173994 1.071082764 1.007368462 0.909733254 0.865028583 0.964503982 354569612 FBPase Mesorhizobium australicum WSM2073 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium australicum; 1.103517428 1.098996878 1.092531307 1.074969184 1.082387824 1.076574509 1.02642619 1.04145025 1.047580691 1.087450727 1.111594779 1.096444391 1.081800247 1.058464067 1.045419603 1.06117489 1.080917562 1.084160094 70732485 hbh Pseudomonas fluorescens Pf-5 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas protegens; 0.787557326 0.866085253 0.810338517 0.83669047 0.873712592 0.87155985 0.837821383 0.836631718 0.905470371 383819423 bphc Mycobacterium phlei RIVM601174 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium phlei; 0.866434677 0.826663256 0.841506491 0.827107288 0.877638054 0.830778608 0.897945591 0.845041981 0.860127005 0.847338421 0.81198014 0.861018862 0.812816149 0.788242354 0.80312744 0.879783526 0.913526556 356415284 FBPase Gluconobacter morbifer G707 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconobacter;species:Gluconobacter morbifer; 0.875631079 0.90003288 0.843137585 0.886852777 0.780498083 0.807220482 0.810722071 0.815322009 0.819829058 0.803430005 0.877779422 0.876408521 29652450 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.248291599 1.235460345 1.244581743 1.218869002 1.200502664 1.20910787 1.197754371 1.154216599 1.227040923 1.209869991 1.228005921 1.237885577 1.172941333 1.219112812 1.156433269 1.19236739 1.218334249 1.247904961 323365284 nifh uncultured microorganism Nitrogen Nitrogen fixation NA 0.79351293 0.828656622 0.787757069 0.842888486 0.822022439 0.831110174 0.80286551 0.982616107 0.859098039 0.830500633 0.781890877 0.825097466 0.876340074 0.800474372 342316604 aoxb Acinetobacter sp. 18AAV Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 1.146284649 1.180254579 1.128224934 1.156965993 1.152793785 1.223310121 1.151472988 1.132623865 1.122469412 1.163049229 1.160322698 1.172414765 1.158363446 1.15165932 1.143914703 1.171743786 1.153977131 1.176909453 380731049 mannanase Corallococcus coralloides DSM 2259 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Corallococcus;species:Corallococcus coralloides; 0.979028048 0.962671566 0.953849502 1.016384676 0.975635671 0.952137533 0.996363668 1.025139289 0.977959913 1.000342345 0.978625566 1.008812292 0.961528752 0.953872039 1.023623716 1.014065388 0.968444699 0.964185428 312213532 badh Leptosphaeria maculans JN3 Organic Remediation Aromatics Other aromatics superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Leptosphaeriaceae;genus:Leptosphaeria;species:Leptosphaeria maculans; 0.836704474 0.886617705 0.93357782 0.947326065 0.947726261 0.925097169 0.945938312 0.92263381 0.937868873 0.919485248 0.94711744 0.952032162 0.864180771 0.857176535 0.841533998 0.857670726 0.932384344 0.890334531 311900923 pula Kitasatospora setae KM-6054 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Kitasatospora;species:Kitasatospora setae; 0.790841721 0.844258623 378747734 aps_apra uncultured gamma proteobacterium Sulfur adenylylsulfate reductase NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 1.047137083 0.959957138 0.978593491 0.983918805 1.098805963 0.998520231 1.026897974 0.966579499 0.991250314 1.029858778 1.004530926 0.98233467 1.048085361 1.068706796 0.968305637 0.968707322 0.956875317 1.039665475 134076503 exoglucanase Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 0.866416017 0.845769607 0.841545733 0.856956972 0.823134107 0.824531732 0.878661348 0.812688016 0.885258564 0.839026018 0.813434683 0.827006222 0.811915617 0.847539528 0.876716855 0.8411574 83316658 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.035530612 1.019008731 0.967969545 0.970374141 0.949135585 0.991483324 0.967094614 0.942251761 0.962156516 1.002166328 1.001170051 0.971335898 0.934171247 0.956119442 0.94602994 0.973878889 0.979547142 0.994102589 387888389 arsc Escherichia blattae DSM 4481 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Shimwellia;species:Shimwellia blattae; 0.999323497 0.989622342 0.99914328 0.978596578 0.978179759 0.970347505 0.906093644 0.913254316 0.970703548 0.987380943 0.985233027 0.950292893 0.94833338 0.944379224 0.931683122 0.933380598 0.989180059 0.993586442 118071251 acetylglucosaminidase Shewanella woodyi ATCC 51908 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella woodyi; 1.018153499 1.08601451 1.033849629 1.018645323 0.948193519 1.015084715 0.97378446 1.02124719 1.001429319 0.999229134 0.955997311 1.012718312 0.950964655 0.970165193 0.95841779 0.96730658 0.989086637 1.005005145 254271785 tfda uncultured bacterium Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria; 0.937930038 0.940174242 0.956823643 0.919615475 0.865928672 0.884902306 0.872358011 0.912923439 0.884904452 0.871060196 0.844209857 0.868658747 0.864445179 0.820310436 0.835193103 0.875003082 0.923249024 0.901488228 70981957 cutinase Aspergillus fumigatus Af293 Carbon Cycling Carbon degradation Cutin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Aspergillus fumigatus; 0.788960604 0.796184297 0.839217654 0.871725393 0.871322235 0.850037244 0.830802303 0.925116348 0.83561904 0.824676662 0.90358645 0.820656079 0.836101714 113731798 limeh Caulobacter sp. K31 Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 0.877692814 1.046531362 0.901838212 0.903055983 0.899334971 0.996690738 0.913225491 0.954211511 0.957925731 0.960582752 0.877172429 0.945523489 0.881340967 0.918938186 0.946029929 1.009821833 1.004103405 383649538 acetylglucosaminidase Sphingomonas elodea ATCC 31461 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas elodea; 0.840774058 0.885633868 0.852920352 0.828339278 0.793143695 0.873726292 0.845434687 0.879192592 0.850976861 0.88859346 0.794464035 0.813410438 0.879654591 0.87625021 255922984 pme Actinosynnema mirum DSM 43827 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Actinosynnema;species:Actinosynnema mirum; 0.896927935 0.873037357 0.836871837 0.92900915 0.845203597 0.892807487 0.90536579 0.922524233 0.936499424 0.905092831 0.880659209 0.916498112 0.880102138 0.872463592 0.854365486 1.064027954 0.919410662 0.934753034 154159943 PRK Xanthobacter autotrophicus Py2 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 0.844803396 0.849598178 0.855740792 0.85544749 0.82851048 0.821240375 0.818461669 0.824730188 0.809735315 0.831164693 0.868616747 0.857905607 340532025 mdlc Amycolatopsis mediterranei S699 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 1.000197846 0.962492413 0.959647679 0.968728807 0.877291752 0.962255142 0.885518196 0.939520429 0.948184186 0.953322945 0.898448478 0.938393004 0.933395903 0.949423521 0.858628996 0.903773376 0.969584818 0.966927766 88797048 pectinase (pectate_lyase) Reinekea sp. MED297 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Reinekea;species:Reinekea blandensis; 0.822101018 0.818090627 0.80500522 0.824458571 0.835684951 0.848069469 0.83823011 0.844310089 0.836087624 0.817550425 0.87379895 106769529 xyla Roseiflexus sp. RS-1 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus; 1.073876232 1.061205531 1.054978831 1.039929919 1.030452575 1.072599744 1.065756133 1.067304976 1.04327292 1.033441725 1.038005806 1.022972149 1.045212418 1.011525858 0.991152188 1.028995664 1.057130975 1.028339238 149913153 dmdA Roseobacter sp. AzwK-3b Sulfur DMSP degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 1.077375558 1.013967612 1.09112634 1.093784969 1.091881247 1.078249318 1.127041294 1.126850442 1.093862286 1.055361382 1.047060037 1.069063463 1.044297109 0.981632047 0.980718467 1.064583872 1.074331503 1.066571594 189335366 xylc Burkholderia multivorans ATCC 17616 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 1.531820489 1.478995949 1.483493199 1.484048825 1.46862964 1.503840265 1.4756537 1.470257598 1.482307482 1.446458962 1.47528187 1.484761622 1.453607032 1.422449084 1.465691796 1.479339278 1.493168942 1.457414407 347361278 catechol_b uncultured bacterium Organic Remediation Aromatics Other aromatics superkingdom:Bacteria; 0.795828785 0.808882172 0.867568172 0.802131966 0.825711189 0.867402712 110632212 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.900649559 0.985344506 0.896648229 0.926913834 0.920973132 0.992272464 0.887909194 0.902355399 0.849049315 0.954915048 0.910799175 0.94060062 0.952898489 0.92417595 0.953876375 0.93447576 0.941539763 0.98872034 169793374 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.842764652 0.887258531 0.841164484 0.916786524 0.886750554 0.863572254 0.843078383 0.845635755 0.866782862 0.858915019 0.876095877 0.849501734 0.860740042 0.857322371 0.872507269 0.89390225 0.869318146 0.857557243 160362383 vana Delftia acidovorans SPH-1 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 0.933580777 0.90302363 0.897142475 0.914159721 0.922640432 0.921586163 0.890820145 0.93418025 0.878043382 0.845069343 0.887526109 0.867759974 0.837783509 0.802047426 0.931590067 0.90799163 315604709 amyA Actinomyces sp. oral taxon 180 str. F0310 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 180; 1.033337977 1.023830483 0.967846584 1.011640367 1.00527643 1.027740982 0.986755821 0.98511734 0.998869377 1.050979603 1.048097334 0.991614037 0.947488992 0.992594112 0.93613863 0.986106253 0.999857767 1.061404546 315494452 aoxb uncultured bacterium Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 0.826111675 0.819766724 0.843045748 0.828253802 0.847265558 0.831444476 0.828536058 157322729 endochitinase Serratia proteamaculans 568 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia proteamaculans; 0.785253471 0.827898349 0.79348186 0.787160138 0.843624047 0.809781745 0.825872284 0.788364433 0.810954528 0.852925278 239991742 acetylglucosaminidase Streptomyces roseosporus NRRL 11379 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces filamentosus; 1.002560668 0.985098687 0.971768278 0.977353124 0.957906157 0.982771531 0.95156522 0.982041985 0.954691343 0.983458555 0.961390155 1.018455556 0.950410354 0.992930475 0.966031506 0.987515732 0.976649944 1.03004618 197695836 ppx Streptomyces sp. SPB74 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 1.121429864 1.127632147 1.107216811 1.113988013 1.064455948 1.115726641 1.075168462 1.083558948 1.087139567 1.084198538 1.091547012 1.091824643 1.070543391 1.087674577 1.055242124 1.067232843 1.132908505 1.103334889 169150480 mer Acinetobacter baumannii Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 0.904569433 0.889038833 0.917432722 0.897683597 0.915323019 0.913297643 0.902371821 0.857775131 0.912873009 0.915959394 0.849201065 0.983117687 0.869803236 0.886698912 0.854669158 0.85449859 0.905483975 0.922467581 340782403 rubisco Acidithiobacillus caldus SM-1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus caldus; 1.039893673 1.014725843 1.00925221 1.108052862 1.016532381 1.037654172 0.993074946 1.011282512 1.037463688 1.014799219 0.982839602 1.026399131 1.035487332 0.982153843 0.993518521 1.013554864 1.063312683 0.966440789 358244311 alkb Gordonia araii NBRC 100433 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia araii; 0.863517702 0.817017188 0.826907964 0.782223473 0.828340485 0.837111 0.857036618 0.855751123 0.863241225 0.809480292 0.844885674 0.829334568 0.816292039 0.851383033 319996307 amyA Anaerolinea thermophila UNI-1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Chloroflexi;class:Anaerolineae;order:Anaerolineales;family:Anaerolineaceae;genus:Anaerolinea;species:Anaerolinea thermophila; 1.07890391 1.084281993 1.075575949 1.066049064 1.065725607 1.073230767 1.067957694 1.050805904 1.060358694 1.066568914 1.062316659 1.067510639 1.037841844 1.045983927 1.013058529 1.031431054 1.079803094 1.068597721 389934965 atzb Burkholderia terrae BS001 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia terrae; 1.155171775 1.203654789 1.122011594 1.127717179 1.132115944 1.152548991 1.097137332 1.103338077 1.085510984 1.126060518 1.115686117 1.135208266 1.102575969 1.109781147 1.012923319 1.100340891 1.138679017 1.160728599 50818137 mcra Methanomethylovorans thermophila Carbon Cycling Methane Methanogenesis superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosarcinaceae;genus:Methanomethylovorans; 0.883427211 0.882017932 0.899901568 0.872183435 0.838737323 0.86465902 0.818264101 0.877962118 0.871237134 0.819239195 0.890336881 0.82235693 0.864115152 0.843901375 0.849551663 0.884238962 0.898147113 389736981 chitinase Rhodanobacter sp. 115 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Rhodanobacter; 1.122399123 0.948791895 0.948644472 1.058735417 0.9592445 0.990737383 0.975239173 0.959791898 0.995116935 0.9495177 0.968773861 0.999245325 0.961684079 0.904257745 0.893045235 0.971973863 1.014382887 0.915811568 364563867 ppx Anaeroglobus geminatus F0357 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Anaeroglobus;species:Anaeroglobus geminatus; 1.187324202 1.118901415 1.104804396 1.149377494 1.175081913 1.147163228 1.163463921 1.150134601 1.159277935 1.12010198 1.095525263 1.148838584 1.153564942 1.120718295 1.108880025 1.105465687 1.164340005 1.094732338 297565732 amyA Meiothermus silvanus DSM 9946 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Meiothermus;species:Meiothermus silvanus; 0.867866693 0.876240441 0.853804461 0.901024942 0.90344011 0.860433534 0.839828613 0.860420857 0.828236766 0.834933349 0.920023645 0.84262433 0.815935644 0.883435199 0.900061263 328844097 ara Asticcacaulis biprosthecum C19 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis biprosthecium; 0.818793262 0.827130307 0.826699555 0.775557379 0.885021922 0.856970338 365858966 xylanase Acetobacteraceae bacterium AT-5844 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae; 0.953554715 0.911738284 0.905108561 0.947557254 0.89389527 0.90680064 0.903773675 0.918813092 0.963191218 0.924551742 0.983219266 0.96230624 0.887492528 0.86006437 0.858932604 0.896712663 0.934367311 0.936431395 145225541 cutinase Mycobacterium gilvum PYR-GCK Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 1.00480393 0.998273652 0.987034769 0.948305242 1.005741227 1.008166411 1.009632863 0.993962536 0.985937429 0.987215851 0.991871848 0.971282687 0.978070092 0.917828737 0.907882606 0.916893705 1.003999516 0.97774307 151336975 endochitinase Thermoascus aurantiacus var. levisporus Carbon Cycling Carbon degradation Chitin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Thermoascus;species:Thermoascus aurantiacus; 0.846468913 0.876307203 0.86913594 0.858737997 0.866832487 0.846284607 0.879810188 0.861929664 0.821449862 0.806100932 0.804699245 0.846994658 0.807559375 0.804506893 0.838926271 0.812126235 357383072 xylanase Pelagibacterium halotolerans B2 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Pelagibacterium;species:Pelagibacterium halotolerans; 0.937595494 0.942067432 0.976214965 0.99111394 0.942598818 0.968963291 1.00491173 0.966335951 0.950605151 0.976792986 0.954453892 0.968264294 0.956312539 0.919312261 0.865511291 0.952921096 0.974209569 0.94381417 154156505 tktA Parvibaculum lavamentivorans DS-1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhodobiaceae;genus:Parvibaculum;species:Parvibaculum lavamentivorans; 0.890181937 0.905571729 0.850687136 0.855972072 0.859136711 0.881684145 0.82655909 0.837403603 0.835868584 0.880555402 0.854289934 0.840467671 0.816098302 0.839223448 0.814004321 0.874336717 0.904495745 290956049 xylg Streptomyces scabiei 87.22 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces scabiei; 0.944864927 0.966287335 0.945189119 0.999269802 0.91506623 0.934757946 0.862054149 0.887403517 0.891454857 0.917230365 0.888379993 0.973825134 0.886300341 0.908119948 0.926824938 0.899591851 0.983209575 0.948994205 55376903 nitrilase Haloarcula marismortui ATCC 43049 Organic Remediation Aromatics Other aromatics superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloarcula;species:Haloarcula marismortui; 0.807583784 0.828644818 0.824094387 0.798004444 0.826323097 0.824380894 0.847213357 0.764875155 0.849425882 0.831141343 0.842119453 0.893723362 0.828769315 0.827567922 351592655 ppx Pelagibacterium halotolerans B2 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Pelagibacterium;species:Pelagibacterium halotolerans; 1.04314795 1.036562102 1.102242266 1.144802956 1.161398606 1.115902507 1.1505413 1.060123897 1.126842752 1.153038446 1.153491764 1.214781404 1.14673365 1.117992407 1.108768448 1.135654833 1.076498732 1.043503656 419081736 one_ring_23diox Escherichia coli DEC4A Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia coli; 1.191847161 1.14250757 1.142630437 1.132530754 1.125751987 1.138112835 1.067879953 1.1239059 1.151254223 1.119784406 1.150673901 1.124675376 1.130846263 1.11783893 1.039908043 1.104300048 1.180680256 1.130918575 225872235 RgaE Acidobacterium capsulatum ATCC 51196 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Acidobacterium;species:Acidobacterium capsulatum; 1.118093611 1.057829213 1.099169049 1.120794534 1.069794073 1.075561647 1.058548047 1.088161664 1.11734717 1.085286764 1.071879552 1.120091517 1.090417496 1.070719183 1.064945223 1.068560337 1.112253823 1.073670333 313147519 xylanase Bacteroides fragilis 3_1_12 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides fragilis; 0.871009705 0.864317493 0.909546818 0.906453257 0.89954745 0.898684778 0.885534148 0.893973007 0.919913844 0.921185251 0.888901662 0.906606901 0.866371136 0.80052012 0.850818936 0.838601501 0.958819237 0.926580618 251794925 xylanase Paenibacillus sp. JDR-2 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 0.753552039 0.853613706 0.834709679 0.786784966 71083242 tktA Candidatus Pelagibacter ubique HTCC1062 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;genus:Candidatus Pelagibacter;species:Candidatus Pelagibacter ubique; 0.968429221 0.921006201 0.920280468 1.107059781 1.06297157 0.963642262 1.022719759 1.022859537 1.042775325 0.962746017 1.179793999 1.080303634 0.908739599 0.954252869 0.935939733 0.974179931 0.969883071 0.924120588 315262852 amyA Mycobacterium gilvum Spyr1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 0.863025375 0.832495153 0.847104355 0.844998454 0.823824441 0.86946081 0.850129236 0.826067753 0.840378636 0.872100275 0.857304091 0.847639249 0.777029449 0.888929258 0.837196805 0.817301644 0.810517837 0.868504736 319979254 amyA Actinomyces sp. oral taxon 178 str. F0338 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 178; 1.069681669 1.059339836 1.060536941 1.084578051 1.07210106 1.086408054 1.060709727 1.047765756 1.064014814 1.042976557 0.991741667 1.020282057 0.983213648 1.010695074 1.004672037 0.989909758 1.081030706 1.101781053 398383982 B_lactamase_A Sphingobium sp. AP49 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium; 1.51533473 1.489282171 1.493374588 1.494611864 1.477798596 1.492281651 1.467780442 1.476087196 1.475893003 1.448822995 1.479384814 1.48326451 1.452452417 1.434560776 1.45992314 1.468539979 1.491266038 1.45447556 149920361 linb Plesiocystis pacifica SIR-1 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Nannocystaceae;genus:Plesiocystis;species:Plesiocystis pacifica; 0.877253995 0.916419951 0.85269856 0.878553615 0.893425752 0.856792015 0.860954649 0.92111496 0.900851189 0.894886654 0.850404033 0.853902112 0.882370265 0.858291357 0.843563799 0.894875558 0.929395485 294673702 RgaE Prevotella ruminicola 23 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella ruminicola; 1.218001781 1.184311809 1.21038879 1.209979598 1.178720663 1.172172996 1.157170978 1.191549481 1.201401099 1.183485014 1.187127913 1.211825631 1.176702958 1.157191774 1.169446485 1.177891522 1.185157833 1.142592731 378782596 amyA Blastococcus saxobsidens DD2 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Geodermatophilaceae;genus:Blastococcus;species:Blastococcus saxobsidens; 0.916688855 0.872043817 0.951193997 1.016716316 0.932385126 0.969774522 0.982602213 0.968283286 1.094569608 0.950776996 0.946660623 0.955003478 0.928045241 0.894952144 0.872852646 0.895490816 1.012637084 0.924387184 384214005 nagg Bradyrhizobium japonicum USDA 6 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 0.938903927 0.948177919 0.930103237 0.989011047 0.865675657 0.884351446 0.874863922 0.948893333 0.930829224 0.886069848 0.892012804 0.929948718 0.874844869 0.870660664 0.878847837 0.84898712 0.92861012 0.911140648 220909603 PRK Cyanothece sp. PCC 7425 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 0.812230616 0.814833947 0.857537553 0.805012315 0.848428325 0.822271277 0.863184033 0.849340627 0.862047693 0.842299958 0.849131066 0.841483708 0.786600329 0.814336225 0.789733991 0.889946031 0.918800275 328886949 mannanase Streptomyces venezuelae ATCC 10712 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces venezuelae; 1.042291517 1.030847333 1.015071798 1.019292285 0.963797322 1.021135849 0.951827669 0.947352079 1.01980364 0.987859609 0.98320548 0.998434253 1.00570676 0.96410739 0.917836963 0.973737429 1.021014224 0.99614175 289614331 phospholipase_D_fungi Sordaria macrospora Carbon Cycling Carbon degradation Phospholipids superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Sordaria; 1.243894059 1.169201289 1.198970584 1.225557696 1.178109346 1.211755189 1.15527283 1.205234959 1.19257727 1.169167605 1.172842392 1.191746854 1.174914301 1.160355819 1.156431247 1.191218075 1.219117561 1.188809086 160896802 vana Delftia acidovorans SPH-1 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 1.186288439 1.1463856 1.124255782 1.1487151 1.112559024 1.168741434 1.111694197 1.124169366 1.140429365 1.137139667 1.143474795 1.124813889 1.1038495 1.113566321 1.100522906 1.137902603 1.173834819 1.128918039 39976397 pec_Cdeg Magnaporthe oryzae 70-15 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 0.927034229 0.96463968 0.929501942 0.986427097 0.922017529 0.933559036 0.889637842 0.938907659 0.914813697 0.943970369 0.88690979 0.94754261 0.851307831 0.911905096 0.906248828 0.921943897 0.952735594 0.943648735 240171054 cueo Mycobacterium kansasii ATCC 12478 Metal Homeostasis Copper Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium kansasii; 1.16735079 1.141653457 1.140415132 1.164255521 1.110062756 1.168152574 1.109325735 1.15653882 1.178992647 1.12228301 1.120368218 1.146164572 1.118484748 1.119486685 1.111676279 1.139602142 1.181252066 1.130273611 183176475 alkk Mycobacterium marinum M Organic Remediation Others NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium marinum; 1.226327795 1.230212641 1.189792576 1.189970306 1.17978733 1.244668439 1.196906345 1.204823905 1.18818087 1.22274104 1.172661807 1.201088028 1.162857735 1.173205309 1.13001864 1.184959874 1.190074139 1.20208655 302681799 lactase_fungi Schizophyllum commune H4-8 Carbon Cycling Carbon degradation Lactose superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 0.975712796 1.001790225 1.031180009 1.018304691 1.00863021 1.029811323 1.036475039 0.97894184 0.973463356 1.066571297 1.060730354 1.001311902 1.02933549 1.067927695 0.993228827 1.004965152 1.039664142 1.003615098 333920002 badh Amycolicicoccus subflavus DQS3-9A1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Amycolicicoccus;species:Amycolicicoccus subflavus; 1.09700133 1.078568039 1.065313739 1.100850041 1.087840048 1.043406089 1.058554762 1.077292966 1.092084422 1.06886251 1.02972002 1.07957763 1.028821386 1.00450119 1.021193004 1.03124393 1.061711751 1.091707317 84694758 badk Polaromonas naphthalenivorans CJ2 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 1.05341193 1.023389579 1.004798585 1.054579886 1.0081614 1.013865651 0.98950715 1.016214664 1.041209684 0.980329282 1.021992797 1.03199949 0.973770076 0.972744563 0.974373098 1.058175012 1.040255273 1.027736398 24421301 nirs uncultured organism Nitrogen Denitrification NA 1.100687352 1.08755135 1.061735367 1.1070813 1.097301711 1.109721237 1.088042329 1.081022678 1.108019005 1.0626405 1.078466017 1.096260889 1.070980416 1.061845789 1.033323829 1.043313884 1.10535039 1.048698517 229313593 amyA Lactobacillus rhamnosus LMS2-1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus rhamnosus; 0.862681441 0.893267395 0.861530104 0.877577556 0.873914337 0.864869696 0.900291703 0.891981001 0.869343181 0.830457699 0.879017154 0.859334725 0.865499647 0.799740873 0.793772323 0.859845747 167349063 linb Caulobacter sp. K31 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 1.152975253 1.108564742 1.132161327 1.146781691 1.068694406 1.121312992 1.077867273 1.087265372 1.127933503 1.10833431 1.100847753 1.129742129 1.092758698 1.074286347 1.056207618 1.089560401 1.149852897 1.126806521 114707623 terc Fulvimarina pelagi HTCC2506 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Fulvimarina;species:Fulvimarina pelagi; 1.074454672 1.108996096 1.081398505 1.058450986 1.082964042 1.093090131 1.053706632 1.040049533 1.055213305 1.064237457 1.072487288 1.063738209 1.074767348 1.083204495 1.097759863 1.078468945 1.094212129 1.135990256 159179978 phn alpha proteobacterium BAL199 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 1.033069438 1.006576076 1.015086743 1.033606777 0.993608003 1.039688704 1.013083666 1.04920706 1.038970751 0.998123603 1.025349805 1.042047987 1.005949118 0.997502677 0.958860157 1.023934217 1.015961249 0.994284866 5702227 actin_Haptophyceae Pleurochrysis carterae Other Phylogenetic NA superkingdom:Eukaryota;order:Coccolithales;family:Pleurochrysidaceae;genus:Pleurochrysis; 1.065479676 1.013844883 0.986430229 1.091051005 0.953606813 0.98398408 0.974378903 1.017668506 1.05331496 1.021271419 0.997768293 1.008890701 0.928839752 0.961037607 0.91397462 1.008113729 1.064372005 1.014190539 374098743 mdlc Streptomyces hygroscopicus subsp. jinggangensis 5008 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces hygroscopicus; 1.123360471 1.052844121 1.077071272 1.124774756 1.051116866 1.134132252 1.037864502 1.055590386 1.083715852 1.072855533 1.064819093 1.051027897 1.017953134 1.084873526 1.080543244 1.064661257 1.165063942 1.101408247 288961636 badh Azospirillum sp. B510 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum lipoferum; 0.806845548 0.810496745 195970039 mer Sinorhizobium meliloti 1021 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium meliloti; 1.077045483 1.117582215 1.106153022 1.065205384 1.085383367 1.077514545 1.079005686 1.072617159 1.071103238 1.07582361 1.066405307 1.086755512 1.053910239 1.046726434 1.048448168 1.085300633 1.115527294 1.101785086 378549588 amyA Citricoccus sp. CH26A Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Citricoccus; 0.922872335 0.943561394 0.934166801 0.955867289 0.92860472 0.938220197 0.944238363 0.947111096 0.907128438 0.86492645 0.906019619 0.903788838 0.844254118 0.831931304 0.828305888 0.848661258 0.921578021 0.873650947 239802576 tktA Variovorax paradoxus S110 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 1.257274494 1.243486484 1.235737294 1.249256227 1.233579502 1.256943452 1.227341176 1.234638655 1.270911119 1.217552235 1.226246952 1.235624445 1.232904099 1.203817188 1.215171718 1.215012898 1.274691341 1.22675539 407366009 nitro Pseudomonas mandelii JR-1 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas mandelii; 0.850407817 0.835407623 0.85899721 0.819845945 0.847601998 0.882384462 0.815513668 0.906925775 0.90519973 0.855630036 99030551 ppk uncultured bacterium Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria; 1.266565669 1.263824773 1.213023316 1.233341123 1.21905938 1.25788493 1.221563841 1.225936784 1.216711123 1.232097055 1.230230605 1.230464042 1.232571624 1.186620717 1.21078749 1.1735172 1.237816552 1.218177067 325292786 cysI Agrobacterium sp. H13-3 Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium; 0.999376561 0.997165722 0.914264059 0.97451573 1.014503559 0.999729073 0.963298694 0.962144308 0.971247652 1.000179358 0.971015557 1.007979059 0.946900931 0.970814944 0.928170086 0.977272932 1.000100337 1.018461517 108463091 arsc Myxococcus xanthus DK 1622 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus xanthus; 1.069449805 1.047170948 1.069410683 1.088175874 1.069829776 1.070363579 1.072344245 1.074587636 1.067115157 1.070885699 1.049184208 1.092976179 1.033003743 1.019393687 1.016613259 1.052708999 1.076343486 1.078053177 393723285 linb Sphingomonas sp. PAMC 26605 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 0.819614496 0.856319169 0.810151453 0.832673305 0.874791624 0.817484768 0.869144881 358637165 ben_bcla Azoarcus sp. KH32C virulence NA NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 1.165841873 1.330200275 1.16515242 1.129785115 1.177726049 1.19749036 1.16126814 1.137168595 1.168212274 1.181408569 1.174953058 1.164534587 1.174890259 1.14432131 1.15037303 1.188260273 1.162019783 1.173806621 239885804 gdh Perkinsus marinus ATCC 50983 Nitrogen Ammonification NA superkingdom:Eukaryota;order:Perkinsida;family:Perkinsidae;genus:Perkinsus;species:Perkinsus marinus; 0.807233627 0.834244649 302412250 pec_Cdeg Verticillium albo-atrum VaMs.102 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticillium;species:Verticillium alfalfae; 1.062042269 0.989214421 1.061005485 1.035517925 1.032922307 1.060640225 1.022687046 1.043023611 1.028894434 1.017062563 1.029029397 0.99798828 1.012885704 1.015453124 1.051247121 0.98276628 1.04918666 1.006188055 295835843 amyA Streptomyces sp. SPB74 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 0.925884405 0.930652021 0.921825652 0.923374661 0.946977856 0.93364136 0.921264305 0.958960993 0.910609053 0.923573135 0.929475166 0.94836873 0.93723285 0.903958523 0.870184465 0.91051008 0.948399006 0.924975753 213409173 amyA Schizosaccharomyces japonicus yFS275 Carbon Cycling Carbon degradation Starch superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Schizosaccharomycetes;order:Schizosaccharomycetales;family:Schizosaccharomycetaceae;genus:Schizosaccharomyces;species:Schizosaccharomyces japonicus; 0.782472647 1.06617489 1.003761624 1.083460642 0.954275171 0.981151944 0.976735529 1.053385311 1.11065845 1.196967486 0.954031114 0.945349495 393778372 nagg Ralstonia sp. PBA Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 0.890193096 0.797984145 0.899632719 0.832357999 0.784661685 0.811631343 0.846496685 0.888819244 0.862507671 0.852372353 0.867506078 0.814356982 0.833304621 319799109 arsc mine drainage metagenome Metal Homeostasis Arsenic Detoxification 0.86201547 0.821513698 0.816396293 0.883678516 0.857008516 0.874428335 0.820408184 0.876956476 0.844001337 0.86523167 0.842441514 0.880855934 0.877814672 0.837396184 0.856572697 0.930089139 0.851161294 146341131 catb Bradyrhizobium sp. ORS278 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 1.294050402 1.210354884 1.158672789 1.219385849 1.244802842 1.174583781 1.190690186 1.226216395 1.212794867 1.159986081 1.122865993 1.228678133 1.167430526 1.137610277 1.137974653 1.194076121 1.193866655 1.215452902 338205479 aoxb Acidiphilium sp. PM Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acidiphilium; 1.14821861 1.17394565 1.104936886 1.121011743 1.099510199 1.132491547 1.080650324 1.122498671 1.102870476 1.089977483 1.100502517 1.117841014 1.080764666 1.083564721 1.06722656 1.102833663 1.147618713 1.143136489 398822320 cmci Bradyrhizobium sp. YR681 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.802065696 0.802826162 0.894287908 0.804628155 0.815128887 0.84578943 0.803383559 0.821097646 0.809667364 0.834187427 409437817 tfdb Rhizobium mesoamericanum STM3625 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium mesoamericanum; 0.826062427 0.823981662 0.891898537 0.861830694 0.812682282 0.862215476 0.793616474 0.848552647 0.794671637 0.952114145 0.790418737 0.860469946 0.874175799 330719852 pgk gamma proteobacterium IMCC2047 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 1.068093322 1.071299614 1.092083795 1.098924241 1.09886405 1.130536849 1.088878443 1.062092159 1.108063585 1.073518786 1.088130681 1.090370001 1.06581455 1.051417758 1.076816147 1.134128843 1.1001171 1.055196117 118468011 mdld Mycobacterium smegmatis str. MC2 155 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 1.542366126 1.510520432 1.481332845 1.503844838 1.500262531 1.53341778 1.489867254 1.500238154 1.502875746 1.500171962 1.487832349 1.524199503 1.457597465 1.445628648 1.448746173 1.506236536 1.490455459 1.463384705 83414977 phenol_oxidase uncultured Termitomyces Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Lyophyllaceae;genus:Termitomyces; 0.89445562 0.831643868 0.878208831 0.949507333 0.877971568 0.888219253 0.911459815 0.940572503 0.909468791 0.89612789 0.908720816 0.883322812 0.867581532 0.807899438 0.804450142 0.813863408 0.88114754 0.876649893 321166600 cysI Rahnella sp. Y9602 Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Rahnella; 1.001990849 1.001454296 0.959405801 0.979117568 0.965616038 0.930640616 0.922384803 0.969529249 0.95120752 0.951162074 0.920620117 0.950975639 0.877967982 0.899995644 0.836193381 0.907639762 0.987402836 1.014196131 193085163 fccab Chlorobaculum parvum NCIB 8327 Sulfur Sulfide Oxidation NA superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobaculum;species:Chlorobaculum parvum; 0.906747206 0.904394801 0.835480562 0.971085514 0.8961543 0.919629706 0.896587418 0.907259393 0.9373559 0.889776813 0.890931204 0.91698686 0.861023415 0.835226634 0.862912889 0.906949515 0.939457977 226362007 vgb Rhodococcus opacus B4 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus opacus; 0.977850735 0.999647281 1.009640034 1.019193628 0.97716106 1.009851889 0.967463705 0.988662411 0.970072536 0.958755913 0.979651701 0.992469029 0.9852089 0.940159179 0.944729545 0.976275506 1.002993209 1.013451634 299526456 PRK Hyphomicrobium denitrificans ATCC 51888 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium;species:Hyphomicrobium denitrificans; 1.100500706 1.086149005 1.000836788 1.077323114 1.055613979 1.072810181 1.01295371 1.035505584 1.039057566 1.013294655 1.011775173 1.023788302 1.031254249 1.009176719 1.024098278 1.031679938 1.085980908 1.092913014 344039865 chitinase Streptomyces violaceusniger Tu 4113 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces violaceusniger; 0.976152111 0.987227957 0.899080032 1.017176189 0.903557739 0.934899628 0.900500852 0.898936675 0.956706838 0.94236426 0.837661223 0.932095896 0.82460757 0.900343457 0.902979327 0.958423665 0.978255363 167835776 cysI Burkholderia thailandensis MSMB43 Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia thailandensis; 0.836557788 0.890101517 0.811256021 0.861886943 0.817739285 0.815476653 0.826579634 0.831198844 0.832588969 0.860573634 0.893496708 387841493 alkb Fibrisoma limi BUZ 3 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Fibrisoma;species:Fibrisoma limi; 1.167490634 1.106594575 1.089164389 1.157659472 1.132083981 1.066897457 1.094504469 1.062284878 1.109831321 1.073917437 1.128355807 1.107971472 1.077939841 1.05132914 1.00634594 1.064064308 1.108588345 1.051984172 308212913 alkb uncultured bacterium Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria; 1.110363792 0.986918917 0.997448729 0.994017815 1.032122485 1.031008073 0.973814419 0.979572455 1.144853233 0.983385895 0.967015465 0.99483394 1.022145079 0.92973711 0.92296711 0.929956142 1.023770602 0.987060413 115397527 glucoamylase Aspergillus terreus NIH2624 Carbon Cycling Carbon degradation Starch superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 1.173850422 1.176367833 1.144380724 1.192750424 1.137512945 1.175852813 1.099314798 1.138267342 1.12719217 1.158823497 1.133776676 1.140123829 1.119729346 1.138212702 1.118265394 1.134123992 1.183616224 1.153886816 397323251 phn Rhizobium sp. CF142 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 0.858222711 0.842908477 0.857447011 0.786111705 0.819076331 0.815015778 0.868227249 0.810298581 302443011 amyA Streptomyces sp. C Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 1.202993749 1.204084081 1.177690769 1.193491747 1.185517268 1.189158812 1.172958231 1.182616268 1.17515695 1.195602659 1.167655962 1.186220101 1.135204504 1.156228238 1.135697033 1.144810573 1.179371252 1.176843421 3925401 norb Pseudomonas sp. G-179 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae; 1.060385543 1.08650858 1.061262998 1.026313122 1.027926817 1.024981384 1.000605521 1.006082083 1.040442049 1.03459479 1.022943007 1.001765584 0.959259744 0.992602572 0.973925138 0.940580011 1.036131003 1.056736369 237884412 amyA Micromonospora sp. ATCC 39149 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Micromonospora; 1.287812411 1.230397539 1.181140446 1.196123568 1.182766228 1.201673703 1.168459913 1.217144294 1.197633327 1.188167448 1.190890433 1.183566684 1.184310317 1.169395162 1.170957199 1.186038665 1.191992763 1.221511188 381374978 amyA Actinoplanes missouriensis 431 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes;species:Actinoplanes missouriensis; 1.253354581 1.248415001 1.220761306 1.232664273 1.254190319 1.258149379 1.220144921 1.257282756 1.250067014 1.241822348 1.204192964 1.240326883 1.237981821 1.251988263 1.213683433 1.228988918 1.238909684 1.263856889 169762310 GAPDH_Calvin Pseudomonas putida W619 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 0.88753524 0.993851723 0.920929181 0.95049009 0.932862809 0.97713456 0.880819553 0.893186938 0.938883167 0.994195366 0.948433922 0.963030586 0.963919201 0.994786759 0.906581234 0.941263104 0.935941868 0.995674405 284447533 nitrate_reductase uncultured eukaryote Nitrogen N Assimilation NA superkingdom:Eukaryota; 0.912778374 0.843636925 0.911796605 0.939183986 1.002551792 0.955810847 1.000080016 0.947198962 0.912758635 0.924225857 0.941496538 0.966484924 0.911244237 0.88575434 0.825949756 1.0060934 0.935887291 0.929206904 260652266 poba Streptomyces scabiei 87.22 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces scabiei; 1.237244693 1.209551255 1.239374197 1.223120103 1.20957763 1.229333066 1.201244383 1.214231558 1.231838033 1.226978075 1.216088989 1.224015943 1.200883564 1.167531014 1.179621762 1.205903791 1.25800022 1.235852253 110589044 APS_AprB Endoriftia persephone 'Hot96_1+Hot96_2' Sulfur adenylylsulfate reductase NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Endoriftia;species:Endoriftia persephone; 1.100596968 1.047555788 1.006693943 1.044448319 1.05878903 1.040527189 1.026750047 0.979676761 1.017862326 1.01559415 1.015137334 1.016239539 1.015510324 1.01807304 0.956254431 1.006649128 1.024408704 1.077559652 383815940 ppx Serratia sp. M24T3 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia; 0.984554441 0.858551772 0.95619046 1.046930092 0.999001672 0.996550499 0.988215166 0.984834221 0.954701214 0.962343512 0.971437105 1.006606056 0.959435901 0.967188218 1.019533575 0.941626115 0.960700267 0.926230148 359837389 ara Actinoplanes sp. SE50/110 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes; 1.064402571 1.04551908 1.039532776 1.104742303 1.098943198 1.050021998 1.075890322 1.083434823 1.102066617 1.063825704 1.109295993 1.129170305 1.04782815 1.027741847 1.047309383 1.040430083 1.089662937 1.04340914 157285572 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.832717415 0.803594023 0.842553135 0.883895775 338800277 gdh Pseudomonas stutzeri ATCC 17588 = LMG 11199 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 0.966573574 1.030679603 0.983525484 0.92456731 0.930116019 0.979234767 0.92187993 0.911104141 0.833253046 0.920879617 0.886237742 0.909423966 0.926675029 0.851904372 0.944197771 0.959786189 0.941858911 0.981116498 154497249 CsoS1_CcmK Bacteroides capillosus ATCC 29799 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;genus:Pseudoflavonifractor;species:Pseudoflavonifractor capillosus; 1.015192726 0.996420966 1.022299058 1.005134699 1.026615716 1.020737399 1.026968673 1.009402672 1.038907489 1.01508106 1.035766683 1.017330523 0.972170622 0.970677041 0.974498033 0.986248829 1.044723252 1.040004642 99080367 arsc Silicibacter sp. TM1040 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 1.154194045 1.06506608 1.103144095 1.158167736 1.121228 1.10366145 1.135960847 1.159273571 1.129760114 1.084819057 1.073815116 1.104596927 1.063557872 1.018057412 1.045815136 1.043979905 1.117043811 1.078306095 389936081 poba Burkholderia terrae BS001 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia terrae; 0.767780337 0.79161589 0.82363901 0.804052891 0.818476071 0.804470291 0.798424465 0.796657762 0.807563929 0.812033932 0.818923201 198248869 TIM Acidithiobacillus ferrooxidans ATCC 53993 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus ferrooxidans; 1.202728504 1.193197001 1.18794685 1.188973872 1.187340845 1.198563432 1.15786549 1.166415477 1.182064713 1.175920161 1.200615455 1.184352338 1.154989495 1.156235104 1.098472557 1.139723293 1.191246854 1.194006797 225037951 amyA Blautia hydrogenotrophica DSM 10507 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Blautia;species:Blautia hydrogenotrophica; 0.927483153 0.892267701 0.951917758 0.977342236 0.909170935 0.908868238 0.952717923 0.992484977 0.958297604 0.920549737 0.911009341 0.933585549 0.925425564 0.865941727 0.891502173 0.86633859 0.946026203 0.906866933 86196934 amyA Magnaporthe grisea 70-15 Carbon Cycling Carbon degradation Starch superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 0.815289066 0.827363834 0.796749562 378812342 terc Mycobacterium intracellulare MOTT-64 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium intracellulare; 1.23596597 1.210005108 1.192636466 1.22106618 1.158700808 1.228611692 1.177100298 1.217061147 1.200582342 1.19376625 1.170809517 1.199293707 1.142086244 1.172770628 1.138495732 1.19363024 1.218579971 1.197143914 156446985 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.794556542 0.838448932 0.761674412 0.830506511 0.835621808 0.776285361 0.801740652 0.800176275 13249523 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.407113859 1.369973493 1.364958655 1.393187852 1.348813922 1.402989431 1.342244382 1.347165217 1.371006848 1.348328899 1.355748411 1.343626927 1.318536623 1.297176453 1.324621685 1.328787447 1.402182507 1.359768019 158422305 nira Azorhizobium caulinodans ORS 571 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Azorhizobium;species:Azorhizobium caulinodans; 0.843324872 0.879865052 0.869740627 0.88998134 0.899188494 0.901714352 0.8934663 0.855394804 0.841387935 0.891964785 0.887211929 0.861595564 0.833572441 0.817195555 0.794297172 0.895362133 0.853134582 336399214 amyA Prevotella multisaccharivorax DSM 17128 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella multisaccharivorax; 0.86001293 0.93127638 0.829546105 0.865657946 0.815664893 0.885629557 0.827678716 0.804227117 0.866549281 0.869723257 0.828706158 0.857190072 0.839655539 0.846035592 0.855597804 0.881972581 0.889249007 238062409 xylanase Micromonospora sp. ATCC 39149 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Micromonospora; 1.385593748 1.305524785 1.286544978 1.357245671 1.29120722 1.349515656 1.281258723 1.309787974 1.315446248 1.290606827 1.278605076 1.294077597 1.275044154 1.270432518 1.248861772 1.282261433 1.36345159 1.288962206 209967297 rubisco Rhodospirillum centenum SW Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum centenum; 0.773437513 0.817481492 0.837324289 0.877500196 0.786308462 0.790340662 0.871082265 0.859435995 0.865276676 0.797496277 0.845595688 296393194 alkb Segniliparus rotundus DSM 44985 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Segniliparaceae;genus:Segniliparus;species:Segniliparus rotundus; 0.757632512 0.80033685 0.814615368 0.781572569 0.820273336 0.813658671 0.791031312 182413116 ccmL Opitutus terrae PB90-1 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 0.856673629 0.816955188 0.913004114 0.843455474 0.839166633 0.88694469 0.863744825 0.839103059 372000037 mer Rhodococcus sp. Mel Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 0.977528392 0.960303222 1.008024695 1.008254914 0.987619659 1.003955269 0.976985811 0.988014674 0.967540191 1.001935853 1.008701418 0.978160165 0.968956324 0.927161503 0.979312162 0.913656949 0.986597711 1.010687206 326331456 mer Nocardioidaceae bacterium Broad-1 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae; 0.923046775 0.907539583 0.898537963 0.918439425 0.852935171 0.890929159 0.874468492 0.860128604 0.929865424 0.914535802 0.886313802 0.910045238 0.879976363 0.864563893 0.813327902 0.852206897 0.944023605 0.918700172 116090305 aoxb Thiobacillus sp. S1 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus; 0.992376543 0.922335266 0.939971348 0.997935384 0.958674108 0.977303521 0.987979568 0.956895831 0.972176947 0.948094648 0.9010828 0.951471836 0.941074894 0.910836688 0.942329393 0.927792232 0.995666166 0.935863571 330375450 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.886483619 0.931815974 0.85726486 0.861124953 0.876812911 0.901403243 0.857004633 0.856350587 0.885974895 0.901875207 0.875489399 0.871269568 0.865249027 0.824744109 0.839440012 0.858394861 0.870940018 0.9003261 118059166 phn Pseudomonas mendocina ymp Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas mendocina; 0.817339089 0.792070015 0.805926969 0.833520006 337277256 dsra Acetonema longum DSM 6540 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Acetonema;species:Acetonema longum; 1.114277955 1.129200206 1.077476871 1.120220362 1.09700961 1.082106253 1.077773816 1.108155635 1.121401232 1.084393155 1.068974628 1.104515291 1.077870833 1.066856075 1.028882195 1.072704598 1.073638836 1.092103885 386856591 acetylglucosaminidase Deinococcus gobiensis I-0 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus gobiensis; 1.074386047 1.076706149 1.051412427 1.039591698 1.072590051 1.055922612 1.071868168 1.057477576 1.064665664 1.044998811 1.062007328 1.061749329 1.059266792 1.019362442 1.043119419 0.994122252 1.05117954 1.011667757 384102121 amyA Rhodococcus imtechensis RKJ300 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus imtechensis; 1.062313482 1.054471339 1.065085846 1.043851586 1.065860081 1.110089527 1.079620856 1.071056773 1.063561449 1.055991679 1.068689505 1.026606322 1.018770152 1.028246829 0.994743226 0.997404018 1.06045219 1.059608759 327310314 AACT_DiC4HB Thermoproteus uzoniensis 768-20 Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Thermoproteus;species:Thermoproteus uzoniensis; 0.879673054 0.856356199 0.823428531 0.813853187 0.822670914 0.823871075 119225916 catechol uncultured bacterium Organic Remediation Aromatics Other aromatics superkingdom:Bacteria; 1.073128702 1.025997468 0.989536554 1.067260194 0.94836542 0.991417273 0.989588739 1.046779836 1.043101107 1.040595605 0.93563888 1.019651302 0.927285835 0.987700046 0.906340368 0.997461698 1.056571965 1.03099623 83026010 alkb uncultured bacterium Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria; 0.851060875 0.992815369 0.807132902 0.997019231 0.877153119 0.813435559 0.887179541 0.826553928 0.893494686 0.8224194 0.901322989 0.889684525 0.819691992 256578339 dsra Desulfomicrobium baculatum DSM 4028 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfomicrobiaceae;genus:Desulfomicrobium;species:Desulfomicrobium baculatum; 0.925164338 0.915411577 0.835030719 0.913382668 0.94386613 0.880591178 0.880644294 0.835308315 0.919383452 0.840399569 0.853935547 0.898250566 0.837940226 0.89151889 0.917565776 297568816 fthfs Desulfurivibrio alkaliphilus AHT2 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobulbaceae;genus:Desulfurivibrio;species:Desulfurivibrio alkaliphilus; 0.953406225 0.974187399 0.911567566 1.033214622 0.962878871 0.950235423 0.969918675 0.929498404 0.942089397 0.965069179 0.959662359 0.993170434 0.988680499 0.959220853 0.929167793 0.963213239 0.929109186 0.973490154 296128549 glucoamylase Cellulomonas flavigena DSM 20109 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas;species:Cellulomonas flavigena; 1.368965903 1.331230802 1.327296669 1.355633726 1.329305891 1.360474453 1.345853871 1.335085602 1.34002423 1.320328968 1.307394906 1.345845976 1.297654999 1.287623521 1.258026083 1.307091657 1.35568604 1.336342552 403657877 mhpb Mycobacterium vaccae ATCC 25954 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vaccae; 0.763342207 0.807241217 219965754 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.991380187 0.934321197 0.958842075 1.062515483 0.970066934 0.978677893 0.979221411 1.006954576 1.002213658 0.986565902 0.957424808 1.016324232 0.976259049 0.976985959 0.967282734 0.977039751 0.994976923 0.943100872 307551517 4hbcd_dic4hb Vulcanisaeta distributa DSM 14429 Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Vulcanisaeta;species:Vulcanisaeta distributa; 0.984453334 0.959092434 0.945715711 0.961500307 0.858016714 0.962057842 0.903280915 0.90111741 0.953860893 0.942749362 0.924822964 0.943670064 0.902113826 0.901569035 0.877618095 0.910423984 0.962917541 0.993891232 227273366 cellobiase Kribbella flavida DSM 17836 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Kribbella;species:Kribbella flavida; 0.877641735 0.924201055 0.909742714 0.901123842 0.815710214 0.854813948 0.845941243 0.869926421 0.885581903 0.915639629 0.866397821 0.917641701 0.840103874 0.845945259 0.841187478 0.855251728 0.90538895 0.932334275 253988158 cysJ Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Photorhabdus;species:Photorhabdus asymbiotica; 0.95117805 0.836369072 0.816681102 0.933432923 0.826688727 0.86298971 0.837730356 0.849214577 0.814226373 0.817994045 0.868481066 0.811928601 0.85985114 0.835422806 229864795 amyA Stackebrandtia nassauensis DSM 44728 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Glycomycetaceae;genus:Stackebrandtia;species:Stackebrandtia nassauensis; 1.242589105 1.168829616 1.191275412 1.211519258 1.17711748 1.177280294 1.181803499 1.187520254 1.184272032 1.192681954 1.195489228 1.223212262 1.173066218 1.152808805 1.194904559 1.207750732 1.185839584 1.170138383 256362487 glucoamylase Catenulispora acidiphila DSM 44928 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 0.951097009 0.987815227 0.955056658 0.946216099 0.96432049 0.974769426 0.913047024 0.930760042 0.89767015 0.934307453 0.911826011 0.949022026 0.922846456 0.893602706 0.925579815 0.953481232 1.001246927 0.982783192 121700579 rgl Aspergillus clavatus NRRL 1 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 1.075463323 1.083674337 1.036468613 1.09501829 1.056492466 1.082010284 1.00862776 1.03019281 1.026078224 1.029321069 1.001902821 1.021677901 1.031027743 1.023707821 1.007332649 1.001917834 1.078622239 1.054690338 349789078 PRK Thiorhodospira sibirica ATCC 700588 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thiorhodospira;species:Thiorhodospira sibirica; 0.983942592 0.99625406 0.968928069 0.995372824 0.991067026 1.032755072 0.987550313 0.999731975 0.979473431 1.006979172 0.965140905 0.97408398 0.994576154 0.98082545 0.925577059 0.963625798 0.984670815 1.000558488 18034263 aps_apra Syntrophobacter wolinii Sulfur adenylylsulfate reductase NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophobacteraceae;genus:Syntrophobacter; 1.18902782 1.18749889 1.200540856 1.180355399 1.151923557 1.185898351 1.151207827 1.171268386 1.170744337 1.184999085 1.15615012 1.200870538 1.174690482 1.141998326 1.161500444 1.135053615 1.180253304 1.164021358 260222035 terc Curvibacter putative symbiont of Hydra magnipapillata Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Curvibacter; 1.060294026 1.02832639 1.009703017 1.064775894 1.024053311 1.014736008 1.028084445 1.003766756 1.028850459 1.000935096 1.008244923 1.03431744 0.974381291 1.009750011 0.998612007 1.009826227 1.05905944 0.99933057 83316998 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.42501156 1.371528413 1.381670339 1.383088028 1.390543043 1.454079594 1.371640304 1.361490729 1.369158052 1.376718087 1.380310685 1.380082793 1.345803103 1.354440856 1.305028238 1.367716183 1.402016543 1.395431784 225163005 ccmL Clostridium hylemonae DSM 15053 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hylemonae; 0.959520911 0.962787031 0.93430848 0.958702348 0.950681544 0.988246191 0.938349808 0.951575956 0.949962111 0.932664215 0.958626244 0.975790418 0.945277757 0.912549033 0.951959616 0.978048869 0.941594544 0.973682419 296426141 phenol_oxidase uncultured bacterium Carbon Cycling Carbon degradation Lignin superkingdom:Bacteria; 0.923123334 0.840670376 0.866834606 0.89660689 0.829697075 0.872258126 0.799446926 0.826724957 0.844597285 0.896074545 0.878705861 82947718 ppx Magnetospirillum magneticum AMB-1 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum magneticum; 1.246400387 1.230426937 1.217690618 1.253970683 1.209227911 1.243620517 1.209344138 1.231393325 1.202882228 1.183596661 1.202033934 1.203453221 1.193286927 1.167052706 1.186274128 1.221918129 1.276338243 1.187851615 333909353 poba Marinomonas posidonica IVIA-Po-181 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Marinomonas;species:Marinomonas posidonica; 1.019979529 0.918493306 0.954756103 1.051821008 1.05882386 0.963145794 1.08662879 0.995286286 1.017864347 0.983620793 0.943026282 0.996590828 0.98606438 0.916099995 0.91971429 1.000788692 1.004470483 0.954850098 260419720 linc Citreicella sp. SE45 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Citreicella; 0.919807463 0.985744642 0.930132311 0.970922678 0.975681879 0.888212184 0.942727473 0.950396354 0.970066498 0.958991434 0.945635364 0.959562699 0.966404857 0.872462711 0.878614894 0.842305817 0.935119195 0.900360739 311067189 rgl Bacillus atrophaeus 1942 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus atrophaeus; 0.842949304 0.844318874 0.831238743 0.856775585 0.813955558 0.832980158 0.844674094 0.837787868 0.887186146 0.917810837 0.906586449 373890813 mer Mucilaginibacter paludis DSM 18603 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Mucilaginibacter;species:Mucilaginibacter paludis; 0.804031776 0.825840904 397723913 B_lactamase_A Sphingobium sp. AP49 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium; 1.005587606 0.988331748 1.001441687 1.062250162 1.002347214 1.007497525 1.031301842 1.032686559 1.019095956 1.014619229 0.993775723 0.99317792 1.020685361 0.96040057 0.966995891 0.998374987 1.033081176 0.98493505 281192661 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.915057257 0.916133441 0.88790798 0.903212262 0.910092786 0.879163569 0.8456018 0.852936887 0.880212482 0.816097142 0.86503597 0.839605354 0.853056725 0.808992514 0.927043694 0.926977345 187426290 amyA Akkermansia muciniphila ATCC BAA-835 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobiaceae;genus:Akkermansia;species:Akkermansia muciniphila; 1.031342267 1.023685132 0.996759322 1.014026475 0.990393395 0.979470004 0.96089612 0.95003361 0.992102423 1.037728588 0.979459393 0.953378255 0.962102007 0.992796702 0.856619656 0.94692812 1.002920277 1.041753156 373880773 alkb Stenotrophomonas sp. MS192a Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas; 0.917750698 0.927713661 0.906276133 0.940141632 0.883336388 0.921053016 0.865761084 0.874248495 0.897587914 0.889848991 0.868022257 0.881410514 0.853707903 0.844070881 0.839918843 0.894933559 0.90395501 0.896620465 239906575 ben_bcla Desulfovibrio magneticus RS-1 virulence NA NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio magneticus; 1.107541588 1.104680906 1.098525054 1.120717469 1.089015457 1.088385135 1.067523126 1.119278968 1.094245639 1.057229814 1.085532099 1.098441773 1.060195609 1.064839842 1.085186925 1.071020233 1.102636484 1.064515301 262200918 bphc Gordonia bronchialis DSM 43247 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia bronchialis; 0.892290753 0.911193922 0.94282015 0.875778812 0.881433035 0.919554971 0.875674431 0.906703704 0.888027791 0.959469282 0.88718672 0.872967575 0.860181393 0.889939426 0.86171493 0.853267259 0.885611832 0.877741841 365848040 cysJ Yokenella regensburgei ATCC 43003 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yokenella;species:Yokenella regensburgei; 1.245417841 1.195494879 1.195621355 1.262844748 1.248718014 1.245521183 1.259150282 1.263721763 1.279856523 1.184582775 1.220528193 1.191361943 1.202427483 1.169710138 1.248357223 1.258658374 1.245211306 1.226371665 391857332 bphd Hydrocarboniphaga effusa AP103 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Sinobacteraceae;genus:Hydrocarboniphaga;species:Hydrocarboniphaga effusa; 0.860306209 0.801686608 0.821375315 0.783139659 0.834821441 178467589 amyA Streptomyces griseus subsp. griseus NBRC 13350 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseus; 0.825725325 0.825305597 0.880923827 0.820846076 0.8490158 0.967512142 0.873037002 0.826645986 0.870973939 0.827065989 0.848988989 0.84919249 0.824661638 0.86344727 0.923152195 13172282 catechol Streptomyces setonii Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 1.341890445 1.270814679 1.247848077 1.264319957 1.230191364 1.291361534 1.249096677 1.271017169 1.26422313 1.226768003 1.258715976 1.253253413 1.217960643 1.209692 1.233518048 1.262951102 1.284731763 1.23195004 154685214 xylc Bacillus amyloliquefaciens FZB42 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus amyloliquefaciens; 1.130704719 1.073077401 1.104894352 1.136244653 1.111303098 1.067999251 1.106183194 1.070455988 1.113852262 1.02608973 1.045661833 1.078910217 1.072969388 1.029796883 1.042469487 1.031915371 1.09182006 1.090922458 164455640 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 1.243749517 1.234796835 1.190153625 1.199845628 1.189871626 1.255778063 1.213931116 1.188562871 1.19677415 1.217077036 1.190456398 1.211991556 1.15797298 1.207071901 1.141468468 1.196506942 1.199099402 1.214456726 334125966 nirb Enterobacter hormaechei ATCC 49162 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter hormaechei; 0.810694384 0.84564973 0.852175804 0.825619589 0.845079963 0.834086325 0.798305808 0.837744366 0.870760484 0.892848811 0.8549154 0.781881475 0.827356795 313104758 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.816771393 0.784920031 104303914 protease_serine_fungi Dactylella varietas Carbon Cycling Carbon degradation protein superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Orbiliomycetes;order:Orbiliales;family:Orbiliaceae;genus:Dactylella; 0.835757719 0.772577596 0.804435568 0.874692151 0.837187785 218059668 tannase_Cdeg Arxula adeninivorans Carbon Cycling Carbon degradation Tannins superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;genus:Blastobotrys; 0.92187402 0.917972064 0.927084896 0.929408621 0.849665373 0.873762348 0.857571176 0.958584858 0.923394974 0.881658947 0.837305494 0.874383581 0.859049581 0.874093658 0.846345302 0.876725891 0.925382998 0.878493632 328927364 amyA Methanosaeta concilii GP6 Carbon Cycling Carbon degradation Starch superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosaetaceae;genus:Methanosaeta;species:Methanosaeta concilii; 0.88266233 0.882549823 0.926737699 0.875986826 0.889383276 0.8934321 0.870917465 0.891472625 0.896562083 0.896025923 0.816025461 0.870727095 0.795794987 0.87779927 0.845349763 0.898805272 0.808133551 268610614 rgl Ruminococcus flavefaciens FD-1 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus;species:Ruminococcus flavefaciens; 1.457764788 1.482948356 1.448765875 1.370616982 1.408180424 1.447865785 1.37185138 1.379743427 1.378090942 1.396371398 1.396251104 1.397526141 1.383703818 1.362844783 1.359770725 1.380800347 1.399934642 1.399043363 159891063 fthfs Herpetosiphon aurantiacus DSM 785 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Herpetosiphonales;family:Herpetosiphonaceae;genus:Herpetosiphon;species:Herpetosiphon aurantiacus; 0.851905728 0.79974371 0.898015829 0.831199242 0.819816074 0.873665685 0.817321807 0.851530199 0.889593017 0.800163046 210613789 amyA Clostridium nexile DSM 1787 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium nexile; 0.892493285 0.924118242 0.878304645 0.984869569 0.880822385 0.940327443 0.848664212 0.882306446 0.917952281 0.977721116 0.859921328 0.935391868 0.957473772 126348134 endochitinase Streptomyces ambofaciens ATCC 23877 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces ambofaciens; 0.881874662 0.86995494 0.887058909 0.899797419 0.930784046 0.917457864 0.933423886 0.901976355 0.880401605 0.957267589 0.95473009 0.904849266 0.918466715 0.913811316 0.875684722 0.876668036 0.893814218 0.896709071 291424257 amyA Serratia odorifera DSM 4582 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia odorifera; 0.836145244 0.810455245 0.830996519 0.811162353 0.829123839 0.824603625 0.805962871 0.814285601 0.794633231 0.820888459 0.83245878 15788921 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.963554163 1.030927826 0.985815826 1.01815381 0.987773224 1.006908666 0.947750357 0.935005827 0.959787854 0.967938148 0.950989311 0.984373523 0.97653736 0.939138725 0.932196508 0.947782017 0.988149041 1.005202671 258650533 urec Nakamurella multipartita DSM 44233 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nakamurellaceae;genus:Nakamurella;species:Nakamurella multipartita; 1.314464601 1.306374598 1.28544028 1.300081325 1.297754297 1.328157976 1.278174646 1.292445327 1.296337376 1.275133324 1.282171769 1.303843446 1.273497582 1.241901304 1.242740211 1.253715091 1.313577222 1.280107964 291612486 tktA Sideroxydans lithotrophicus ES-1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Gallionellales;family:Gallionellaceae;genus:Sideroxydans;species:Sideroxydans lithotrophicus; 0.793724454 0.814461824 0.801763809 0.835333155 0.911772538 0.788102449 0.864380546 0.804174209 0.816051905 0.841496794 0.844891034 260415184 soxY Silicibacter lacuscaerulensis ITI-1157 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria lacuscaerulensis; 1.098130395 1.09947866 1.113805314 1.165750262 1.133999174 1.116578 1.148061816 1.157038604 1.147288742 1.101733937 1.099624024 1.138073916 1.095822676 1.079473332 1.080735051 1.05483233 1.081018438 1.056871615 62197993 nosz Brucella abortus biovar 1 str. 9-941 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Brucella;species:Brucella abortus; 1.033104958 1.003024543 1.024176385 1.036693158 0.961650437 1.014145722 0.956222532 1.014639156 1.026064846 1.019443098 1.019493688 1.024072137 0.990495997 1.008985749 1.027336714 0.976266195 1.041651184 1.036004086 190013014 chrr Stenotrophomonas maltophilia K279a Metal Homeostasis Chromium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 0.905798602 0.909780998 0.852973982 0.837818461 0.901011515 0.921577449 0.851051896 0.822744172 0.861133356 0.852213711 0.794920772 0.874791497 0.91209518 45386111 narg unidentified bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.990558038 0.968520439 0.975578964 0.964964239 0.971971278 0.979775415 0.995388382 0.929592196 0.940715403 1.073230317 0.979121445 1.02862029 0.916541953 0.923256721 0.874675985 0.887858157 0.954870957 0.941154975 93450477 arsc delta proteobacterium MLMS-1 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 0.90852887 0.837361718 0.917113135 0.935884878 1.000727689 0.96118634 0.934815096 0.941518285 0.8998682 0.909544429 0.943275363 1.031599139 0.943890795 0.849391977 0.93130459 0.932931631 0.956401565 0.912399956 290469648 xylanase Meiothermus ruber DSM 1279 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Meiothermus;species:Meiothermus ruber; 0.999211316 0.996594887 1.062876425 0.98835911 1.045406055 1.084173201 1.062553704 1.061552049 1.009278726 1.068496478 1.036855755 0.977684376 1.011376758 0.997576012 1.002924534 0.972691834 1.016949728 1.017311992 353348129 xyla Alistipes indistinctus YIT 12060 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Rikenellaceae;genus:Alistipes;species:Alistipes indistinctus; 0.942752292 0.950121416 0.940389116 0.895572752 0.889532893 0.927147254 0.920641668 0.929182979 0.910899169 0.959815503 0.868479071 0.884751172 0.870790635 0.87662433 0.838606105 0.891012048 0.932431849 159039025 chitinase Salinispora arenicola CNS-205 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora arenicola; 1.139624325 1.081156527 1.144083715 1.176473435 1.132033869 1.159318063 1.122641162 1.166264253 1.164628859 1.099299166 1.128092922 1.117936536 1.094069686 1.079117779 1.073176996 1.085539302 1.14655428 1.078937569 373251403 amyA Nesterenkonia sp. F Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Nesterenkonia; 0.889090346 0.843438319 0.873725574 0.930333428 0.897540111 0.872956692 0.86306027 0.894756919 0.898752971 0.833964731 0.841584826 0.888348423 0.843646617 0.805171497 0.862087688 0.874843114 0.885923639 291245466 aps_apra uncultured bacterium Sulfur adenylylsulfate reductase NA superkingdom:Bacteria; 0.924816795 0.894226864 0.861696911 0.917579298 0.815864284 0.899713032 0.858404703 0.871430184 0.92785494 0.894172842 0.847342928 0.871295982 0.861842097 0.887727408 0.832983673 0.844740846 0.919503801 0.90340599 237686912 cara Teredinibacter turnerae T7901 Organic Remediation Aromatics Heterocyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;genus:Teredinibacter;species:Teredinibacter turnerae; 0.858524946 0.826109815 0.817753335 0.842708694 0.94223135 0.842541104 0.886253706 0.849927963 0.813942185 0.834525708 0.887552919 389809383 B_lactamase_A Rhodanobacter thiooxydans LCS2 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Rhodanobacter;species:Rhodanobacter thiooxydans; 1.035503213 1.055817229 1.009152174 1.029858574 0.980199613 1.019058667 1.012014701 1.016924938 1.025670084 1.012387705 0.984243773 1.034824929 0.971379446 0.997854964 0.958764965 0.971173724 1.032184665 1.010207965 313837825 amyA Propionibacterium acnes HL037PA2 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium;species:Propionibacterium acnes; 1.060047149 1.012775679 1.015903923 1.038867847 1.039163295 1.023004801 0.989597552 1.020546392 1.079959836 1.055579802 0.986469259 1.047867786 0.978413269 0.959727128 0.95562864 0.955826471 1.011546922 1.030296151 338740933 exaa(moxf) Hyphomicrobium sp. MC1 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium; 0.959311561 0.926571533 0.901802367 0.941648202 0.893909846 0.894790792 0.934916152 0.95327917 0.910950543 0.899413366 0.91105393 0.92878523 0.864182392 0.842065353 0.850534018 0.856281682 0.925258024 0.911728941 302545173 chitinase Streptomyces hygroscopicus ATCC 53653 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces himastatinicus; 1.085619305 1.076902072 1.06390815 1.064159082 1.068918093 1.084464012 1.04417251 1.055435264 1.077110323 1.102646927 1.082352575 1.091924675 1.032519194 1.058383264 1.024155317 1.052392573 1.034993984 1.057318515 260216268 acetylglucosaminidase Cronobacter turicensis z3032 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Cronobacter;species:Cronobacter turicensis; 0.902693237 0.923634622 0.915399216 0.896143284 0.801372409 0.9806764 0.858253987 0.870998396 0.886466482 0.884032676 0.868012756 0.883718689 0.771803712 0.836237251 0.80752158 0.823230216 0.924471676 0.95336085 302689067 pme_Cdeg Schizophyllum commune H4-8 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 1.191103033 1.154576194 1.179582749 1.182605897 1.145045248 1.162934125 1.131589893 1.168310067 1.178767673 1.143954611 1.144831039 1.172973258 1.119772585 1.110756179 1.101316772 1.123401045 1.166105075 1.150777606 404271881 B_lactamase_A Bradyrhizobium sp. CCGE-LA001 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 1.106413977 1.080528321 1.083974058 1.098469182 1.089279518 1.090662213 1.088002978 1.074863885 1.089802854 1.11121412 1.099685344 1.118869741 1.062576251 1.071542126 1.057539646 1.065182322 1.061146305 1.082685225 392382575 amyA Azospirillum brasilense Sp245 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum brasilense; 1.272832214 1.245520194 1.239958669 1.241022507 1.218725384 1.270034512 1.197764552 1.211692604 1.22059554 1.22784292 1.213187938 1.22646225 1.2024978 1.231955646 1.186027477 1.219147608 1.268542885 1.235643566 320534422 amyA Actinomyces sp. oral taxon 171 str. F0337 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 171; 1.056724599 1.037887575 1.066968603 1.110063248 1.037169093 1.044554236 1.042814781 1.045146006 1.058417336 1.040582403 1.046301025 1.030236934 1.024517884 0.967433724 0.977303221 1.023200167 1.075569898 1.037009828 225167364 nifh Dethiobacter alkaliphilus AHT 1 Nitrogen Nitrogen fixation NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Syntrophomonadaceae;genus:Dethiobacter;species:Dethiobacter alkaliphilus; 0.796544984 0.822216617 238934847 Sir Lachancea thermotolerans Sulfur sulfite reduction NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Saccharomycetaceae;genus:Lachancea; 0.838819711 0.79938737 0.821648286 0.809573697 187918833 catechol Burkholderia phytofirmans PsJN Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 1.156429336 1.106040475 1.096739513 1.120777685 1.10815929 1.148166279 1.106763817 1.111879298 1.113301797 1.106650087 1.055764202 1.103711634 1.092613183 1.051342043 1.041151799 1.09331856 1.088226986 1.125949924 33415987 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.762624816 0.789223741 0.862438304 0.773273662 363712707 pcag Acetobacteraceae bacterium AT-5844 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae; 0.92165358 0.994360324 0.96222726 0.998130087 0.952079261 0.970472717 0.987725512 1.021781744 0.981469992 0.977202187 0.944909721 1.000327929 0.938220368 0.949136805 0.908309563 0.950117818 0.962873689 1.016375973 255919661 chitinase Actinosynnema mirum DSM 43827 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Actinosynnema;species:Actinosynnema mirum; 1.060516093 1.020055781 1.009406502 1.026855651 0.976788237 1.038798702 0.911711723 0.986539824 0.997279351 0.959533295 0.968765512 0.977266798 0.941513289 0.987121455 0.914602959 0.97000149 1.031631587 0.992093175 151366835 nrfa Shewanella baltica OS185 Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella baltica; 0.78315167 0.837338542 0.879064024 0.829110527 0.844699605 0.824022269 0.837376635 0.846001755 0.889816482 0.837362485 0.815217736 0.814541168 0.887740375 0.818265898 0.815545789 0.860246316 167350479 amyA Caulobacter sp. K31 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 0.819212265 0.81594388 0.825716501 0.878414202 284821834 dsra uncultured bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.883284793 0.889956667 0.815338442 0.871326292 0.873026483 0.82326759 0.853745156 0.969338853 0.903259842 0.873085344 0.891853813 0.803255134 1.009638851 0.929144775 307216282 dmdA Halomonas elongata DSM 2581 Sulfur DMSP degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas;species:Halomonas elongata; 0.870071751 0.85999145 0.877013288 0.891493457 0.830157652 0.936313721 0.888661891 0.885747215 0.870571154 0.89138401 0.825975497 0.886718888 0.827342544 0.847598608 0.793480501 0.90022864 0.948451853 402773135 exaa(moxf) Methylocystis sp. SC2 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylocystaceae;genus:Methylocystis; 0.998917497 0.947307091 0.990336148 0.944471095 0.972870223 0.953570055 1.011078518 0.985358759 0.96375591 0.956804372 0.989545169 0.979378331 0.965368875 0.919905746 0.892905755 0.904405518 0.957886323 0.974306151 211587491 exoglucanase Penicillium chrysogenum Wisconsin 54-1255 Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 0.809994296 0.795727519 0.817053873 0.941774006 0.799652453 0.828628064 0.807485053 0.871699618 0.799228361 0.873965857 0.790589588 0.83605181 365271650 mdlc Bradyrhizobium sp. ORS 285 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.961483431 1.003588871 0.986180889 1.005378653 0.953880486 1.026338564 0.938568154 1.039838263 0.969493026 0.959729659 0.959757086 0.946914281 0.955891873 0.934740674 0.962060255 0.94605408 1.022695925 1.006985085 118618440 linb Mycobacterium ulcerans Agy99 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium ulcerans; 0.91638051 0.903955449 0.82722321 0.893559677 0.811742802 0.882594961 0.854498718 0.896315424 0.877483992 0.839717945 0.88630789 0.824096478 0.845248508 0.841112687 0.927761515 0.867070982 190688698 cda Cellvibrio japonicus Ueda107 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio;species:Cellvibrio japonicus; 1.172904757 1.131355143 1.13869867 1.164368726 1.140926093 1.121012303 1.146428571 1.138407938 1.137631422 1.140013231 1.159816602 1.188382711 1.121188256 1.065767878 1.08706349 1.107228495 1.112421549 1.083830219 310826927 amyA Eubacterium limosum KIST612 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Eubacteriaceae;genus:Eubacterium;species:Eubacterium limosum; 0.924970294 0.831183361 0.919239969 0.848630238 0.946184928 0.88333741 0.888853162 0.947212266 0.972416467 0.948718344 0.900682184 0.914107921 0.96962208 0.906017371 0.853031182 0.892313386 0.916170327 413931247 nagg Burkholderia sp. SJ98 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 0.945168689 0.96897223 0.902067614 0.954558188 0.900384951 0.920430138 0.927813036 0.877253595 0.906471606 0.894268316 0.888780334 0.938155056 0.828501578 0.871172433 0.832057358 0.895628434 0.976385409 402497661 mdlc Rhodovulum sp. PH10 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodovulum; 0.928715042 0.920574626 0.836683298 0.935075993 0.954604993 0.897089777 0.868000359 0.929493977 0.894091237 0.883255709 0.893587063 0.916790305 0.897056531 0.866682018 0.899621133 0.889052395 0.916549388 0.863412575 337279878 ben_bcla Ramlibacter tataouinensis TTB310 virulence NA NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Ramlibacter;species:Ramlibacter tataouinensis; 0.849212815 0.82582303 0.874012719 0.910710799 0.871841014 0.862344641 0.841793508 0.909748089 0.870199927 0.821336142 0.876036298 0.88394222 0.821084916 0.768912952 0.818179695 0.826663286 0.844663111 308177085 amyA Arthrobacter arilaitensis Re117 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter arilaitensis; 1.119608881 1.14846933 1.124063891 1.109276652 1.091741362 1.141817226 1.088837038 1.092999286 1.125304645 1.138449779 1.100503476 1.1025511 1.069741498 1.089988655 1.028724868 1.130290609 1.126490508 1.105443284 83950360 pgk Roseovarius nubinhibens ISM Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius;species:Roseovarius nubinhibens; 0.92766331 0.989075669 0.949108033 1.018263645 0.891500622 0.882023577 0.93978274 0.905521071 0.96595354 0.91657358 0.85623417 0.917143735 0.895590485 0.907936243 0.849530503 0.934535628 1.040602857 0.862666231 357426260 tfth Azospirillum lipoferum 4B Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum lipoferum; 0.827952442 0.874085355 0.835206275 0.832108036 0.815541617 0.826192116 0.829212131 0.857577766 294325873 mannanase Streptomyces clavuligerus ATCC 27064 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces clavuligerus; 1.248998628 1.223480688 1.207178139 1.220737389 1.228924252 1.266573944 1.248217861 1.233859664 1.197261081 1.226241308 1.207515556 1.221761973 1.18605019 1.195626107 1.153420976 1.184383475 1.229089132 1.246482272 85069178 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 1.212292249 1.168603737 1.213199163 1.232226116 1.19100708 1.197619946 1.149529352 1.21028942 1.212732478 1.222159817 1.193319788 1.258477765 1.195489747 1.209657328 1.250988574 1.234701782 1.2414891 1.183110491 296255906 exaa(moxf) Methylosinus trichosporium OB3b Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylocystaceae;genus:Methylosinus;species:Methylosinus trichosporium; 1.237578419 1.192931009 1.186419724 1.218220979 1.171328767 1.2130248 1.165255213 1.195589979 1.198756424 1.181655912 1.185219342 1.195606427 1.160460118 1.173192272 1.168391218 1.208705035 1.223766856 1.180606145 302415619 protease_aspartate_fungi Verticillium albo-atrum VaMs.102 Carbon Cycling Carbon degradation protein superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticilium;species:Verticillium albo-atrum; 0.967093926 1.22164845 0.903952154 0.985411844 0.893359223 0.966776896 0.889690335 0.960859649 0.94607838 0.955304713 0.892658069 0.925078264 0.914231521 0.919541903 0.844258321 0.901294407 0.980599913 0.993199991 378822357 terc Sutterella parvirubra YIT 11816 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Sutterellaceae;genus:Sutterella;species:Sutterella parvirubra; 1.112096768 1.068277144 1.026194692 1.121855449 1.01732202 1.053846178 1.053514546 1.088956569 1.089159978 1.069968968 1.015383889 1.065141431 1.000901421 0.987181438 0.955385242 0.994246647 1.093380279 1.058785024 343400498 amyA Actinomyces sp. oral taxon 175 str. F0384 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 175; 1.209320596 1.200060422 1.180356069 1.191072149 1.17782172 1.206695076 1.190883585 1.199314008 1.178058593 1.176833861 1.169112981 1.190510892 1.149381211 1.178659251 1.185346432 1.177808366 1.197085084 1.177726138 114321605 bphc Alkalilimnicola ehrlichei MLHE-1 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Alkalilimnicola;species:Alkalilimnicola ehrlichii; 1.252753995 1.237114574 1.226616459 1.249675201 1.27570302 1.235895328 1.25890732 1.272147388 1.246801822 1.221933254 1.23670719 1.279879765 1.275954193 1.234835796 1.253267401 1.258571181 1.241344145 1.203735303 119391555 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.06533352 1.048107888 1.053677232 1.0490842 1.0813531 1.069382122 1.076480135 1.059510234 1.074358858 1.072929094 1.084735953 1.0762381 1.053376628 1.024081088 1.020131816 1.044125833 1.08959402 1.09642065 71908394 bend Dechloromonas aromatica RCB Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Dechloromonas;species:Dechloromonas aromatica; 0.828199748 0.860761606 0.888256673 0.848661588 0.859590013 0.871092645 0.99994389 0.989825722 0.889822606 0.947583399 367474613 nasa Bradyrhizobium sp. ORS 285 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.977532067 0.990287463 0.985465386 0.994469482 0.991632846 0.999784548 1.011828963 1.005888002 1.002724532 0.975069531 1.004245916 1.016980249 0.954834668 0.933436101 0.939229889 0.988104548 1.014264519 1.062604367 116048302 nifh uncultured soil bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.850968237 0.841376251 0.886456202 0.90752663 0.849396308 0.860253464 0.853838701 0.800926158 0.862073461 0.857226306 0.817848985 0.823491306 0.864962735 0.831328688 0.891828919 0.926913316 145603717 glx Magnaporthe grisea 70-15 Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 1.078598034 1.080518776 1.041849162 1.044363883 1.029930001 1.069738837 1.051683407 1.035989018 1.025603238 1.060110128 1.031400232 1.042099731 0.995116311 1.018496766 0.951775582 1.045644061 1.0318305 1.057050966 354609374 dehh109 Halobacterium sp. DL1 Organic Remediation Chlorinated solvents NA superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halobacterium; 0.841938572 0.79977898 0.801005396 0.813196818 2648697 codh Archaeoglobus fulgidus DSM 4304 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Archaea;phylum:Euryarchaeota;class:Archaeoglobi;order:Archaeoglobales;family:Archaeoglobaceae;genus:Archaeoglobus;species:Archaeoglobus fulgidus; 1.139565544 1.115671956 1.085356623 1.045575473 1.026662213 1.095186461 0.995742643 1.032747801 0.974935783 1.058688437 1.031828144 1.055387668 1.032008676 1.020121755 1.031054588 1.007845484 1.028712625 1.065729454 227453409 amyA Corynebacterium aurimucosum ATCC 700975 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium aurimucosum; 0.909057103 0.934753219 0.850310501 0.935382401 0.798556048 0.929446384 0.859598588 0.876968079 0.921073929 0.901936004 0.846303378 0.872671523 0.783779868 0.879053981 0.845131517 0.915655241 0.941844218 66801977 narg unidentified bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.34743504 1.315730239 1.306990831 1.29861316 1.296349759 1.336806346 1.293477756 1.298284445 1.322717626 1.306150387 1.30149675 1.304572036 1.297791542 1.265561407 1.290819998 1.286079492 1.327737729 1.31006594 37813047 pmoa uncultured bacterium Carbon Cycling Methane Methane oxidation superkingdom:Bacteria; 0.823488742 0.903868713 0.854075945 291296468 cda Meiothermus ruber DSM 1279 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Meiothermus;species:Meiothermus ruber; 1.308354852 1.253563435 1.22166988 1.231317512 1.256704243 1.342237356 1.247583817 1.224073758 1.222275859 1.280473587 1.267936345 1.230774416 1.242716304 1.270887832 1.191510817 1.205629729 1.312438543 1.250523884 217407544 actin_Stramenopiles Phaeodactylum tricornutum CCAP 1055/1 Other Phylogenetic NA superkingdom:Eukaryota;phylum:Bacillariophyta;class:Bacillariophyceae;order:Naviculales;family:Phaeodactylaceae;genus:Phaeodactylum;species:Phaeodactylum tricornutum; 0.952848876 0.91831112 0.928430796 0.92634853 0.893809368 0.914529501 0.893102083 0.881686983 0.895022415 0.936156769 0.893068185 0.899744658 0.833305937 0.865583066 0.835280069 0.819837706 0.935813813 0.922353933 56314320 arsc Azoarcus sp. EbN1 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 0.841886393 0.92071933 0.898977877 0.850228587 0.915954848 0.840460131 0.880628313 0.894211971 0.868260988 0.847987046 0.887705001 0.843588538 0.843926396 0.818433242 0.928686039 0.953577319 374987461 acetylglucosaminidase Streptomyces bingchenggensis BCW-1 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces bingchenggensis; 1.280266194 1.295155946 1.28670482 1.250913208 1.272879282 1.305626291 1.251846137 1.242048439 1.242388199 1.282981645 1.276628844 1.259379956 1.248039291 1.263875307 1.271718917 1.253587801 1.281412942 1.258558675 386924139 mhpc Escherichia blattae DSM 4481 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Shimwellia;species:Shimwellia blattae; 0.905542942 0.889304565 0.971246691 0.857927041 0.903271689 0.949245172 0.927886181 0.865853212 0.837489856 0.910985278 0.978230928 0.900999903 0.87282332 0.930797511 0.912018925 0.956197733 0.978627832 0.927964602 116672619 pcag Arthrobacter sp. FB24 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 1.187653968 1.159583367 1.17528946 1.17911329 1.152288105 1.179259971 1.137719964 1.186713611 1.157029592 1.158999137 1.181674108 1.17366436 1.151973968 1.181624399 1.114509848 1.16192073 1.18139382 1.201525155 119948332 amyA Arthrobacter aurescens TC1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter aurescens; 0.808092866 0.815210456 0.800465093 0.817978393 0.799506768 0.873978995 0.830147082 0.864931987 0.814111909 0.818842404 0.866227467 0.862971395 82801443 alkb bacterium alkW92 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria; 1.02449553 1.016187746 1.040157589 1.053151867 1.03414672 1.054858271 1.017097391 1.05480707 1.026529895 1.011756257 1.011512226 1.002153744 1.00674055 0.992528449 0.966885199 1.012666137 1.049525366 1.030292965 153281 amyA Streptomyces aureofaciens Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 0.799751293 0.856465632 0.872258764 0.889063597 0.825378854 0.896929359 0.821345819 0.832360411 0.939274993 0.90693591 0.875016926 0.868117031 0.814312567 0.894266462 0.892812835 0.844699325 0.847108983 331695416 poba Pseudonocardia dioxanivorans CB1190 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Pseudonocardia;species:Pseudonocardia dioxanivorans; 0.755949606 0.852955218 0.81289706 0.81589598 0.78921432 0.786884438 0.812761802 340776996 endoglucanase Acetobacter aceti NBRC 14818 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acetobacter;species:Acetobacter aceti; 0.884927895 0.906738162 0.862680196 0.896891432 0.851124783 0.898488362 0.83641595 0.840886048 0.838257359 0.836417859 0.868167312 0.848484717 0.860902882 0.863752744 0.875892653 0.921340897 229610700 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.001328235 0.991277587 1.000611196 1.054289901 0.940491888 0.979380191 0.990887848 1.027092281 1.024852464 0.991590977 0.984079292 1.002355203 0.952183527 0.982773837 0.939916891 0.989396122 1.055308518 1.024786792 320590595 rgl Grosmannia clavigera kw1407 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Ophiostomatales;family:Ophiostomataceae;genus:Grosmannia;species:Grosmannia clavigera; 0.865503217 0.812897606 0.818569003 0.892563491 0.828964022 0.856648001 0.83115309 0.847306689 0.868568129 0.825759452 0.84550536 0.817577482 0.819320597 0.837276262 0.80971938 0.861490393 0.8638323 145606552 tannase_Cdeg Magnaporthe grisea 70-15 Carbon Cycling Carbon degradation Tannins superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 0.936613306 0.941681487 0.879555819 0.95834104 0.867310108 0.858436726 0.899806011 0.881599755 0.85741683 0.850300213 0.832052606 0.9454738 0.933491626 238750275 amyA Yersinia rohdei ATCC 43380 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia rohdei; 1.000418142 0.877418566 0.87052778 0.883116232 0.875946314 0.872594992 0.888131516 0.862922358 0.938765361 0.826376009 0.924051263 0.919233268 0.83804303 0.826001379 0.818739574 0.83224024 195931875 catechol Gordonia hydrophobica Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia; 1.026341425 1.094705583 1.034749398 1.017781301 1.030168727 1.051767529 1.032642564 1.01782617 1.002904645 1.036874378 1.009533668 1.057068443 1.038654239 1.00919852 1.015527245 1.043657654 1.044675729 1.037971167 46371029 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.275065217 1.283855289 1.290278329 1.249417799 1.247270897 1.277816508 1.24468194 1.260384462 1.259057358 1.260465959 1.24462897 1.25999293 1.2314173 1.247499067 1.191122971 1.233761086 1.253172577 1.286141502 25028538 gdh Corynebacterium efficiens YS-314 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium efficiens; 1.1225805 1.081897155 1.106794013 1.099934049 1.045432903 1.074142815 1.062459686 1.102932073 1.114795415 1.053551728 1.083587209 1.069065611 1.053232824 1.02850994 1.045244466 1.03579023 1.107549423 1.059368774 115384998 phospholipase_C_fungi Aspergillus terreus NIH2624 Carbon Cycling Carbon degradation Phospholipids superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 0.877524848 0.876175726 0.821219234 0.855305395 0.841464335 0.858419435 0.825464226 0.850593883 0.895587069 111036268 xylg Pseudomonas putida Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 1.442085153 1.400162488 1.393340151 1.361674295 1.395091244 1.38722407 1.313293087 1.316051534 1.337531503 1.394556543 1.416499347 1.365070499 1.370558744 1.385352877 1.302817681 1.362909074 1.385781004 1.391831166 256560486 amyA Brachybacterium faecium DSM 4810 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dermabacteraceae;genus:Brachybacterium;species:Brachybacterium faecium; 0.866666691 0.824556573 0.847570127 0.820355982 0.850219025 0.822895268 0.846870678 0.825530477 0.855616022 317154925 ben_bcla Desulfovibrio aespoeensis Aspo-2 virulence NA NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio aespoeensis; 0.801204416 0.788867747 0.811520702 0.784057858 0.836168306 0.793897921 326636631 cellobiase Actinomyces viscosus C505 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces viscosus; 0.966021288 1.050767257 0.966026658 1.047720352 0.976617819 0.991850053 1.003914648 0.987955767 0.960075604 0.958172132 0.972047539 1.005200028 0.895702471 0.897698053 0.852838571 0.930833073 0.968125394 0.976298817 339411461 ara Spirochaeta thermophila DSM 6578 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Spirochaeta;species:Spirochaeta thermophila; 0.79770951 0.812765123 0.854740196 0.83744543 0.833089037 0.839007941 0.826037211 0.772658464 0.878880864 0.813478766 0.823717185 0.771990462 0.854966509 365331450 amyA Bradyrhizobium sp. STM 3809 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 1.03117475 0.999038885 1.026225113 1.044709708 1.025711018 1.009185409 1.043547146 1.066044787 1.029076024 0.989210322 1.015677998 1.037009917 1.029461102 0.953171821 1.017322971 0.98314044 1.014996376 1.000777423 313105036 dsra uncultured prokaryote Sulfur sulfite reduction NA 0.986061225 0.975705437 1.008999559 1.00174658 1.03010015 1.02606493 1.036786257 1.029724758 1.028903315 1.042213967 1.032191405 1.03773587 1.004011755 0.968380761 0.990607042 0.988445373 1.035812224 1.018382436 334117264 amyA Microcoleus vaginatus FGP-2 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Microcoleus;species:Microcoleus vaginatus; 0.780117402 0.805703332 0.977286906 0.822840896 0.839129709 257169645 Bacteriorhodopsin Halomicrobium mukohataei DSM 12286 Secondary metabolism Pigments Rhodopsin superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halomicrobium;species:Halomicrobium mukohataei; 1.13769452 1.138982974 1.101396803 1.167125619 1.131370051 1.119295651 1.132749221 1.12524195 1.160598502 1.119113115 1.103824853 1.159810979 1.102699291 1.079118518 1.039360991 1.085798812 1.111696222 1.10010417 119494279 endopolygalacturonase_fungi Neosartorya fischeri NRRL 181 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 0.827614567 0.795298309 0.889035576 0.780613547 0.815760996 0.842573967 0.79401562 0.823869291 0.826544341 292677815 SoxB Oligobrachia mashikoi endosymbiont F Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 1.098656418 1.072499943 1.072730082 1.177386171 1.071367724 1.082451158 145613742 cellobiase Magnaporthe oryzae 70-15 Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 0.990958602 0.861651921 0.854699091 1.00350166 0.893766123 0.907314063 0.916496211 0.907073226 0.999271173 0.897950534 0.897886164 0.925290388 0.941308514 0.850150602 0.855858439 0.871411568 0.966908175 0.92808456 146408285 oxdb Bradyrhizobium sp. BTAi1 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 1.067321509 1.010662921 1.027843456 1.070431586 1.123314248 1.065111211 1.048162 1.020794893 1.052746139 1.062653827 1.057734813 1.164245066 1.062536264 1.037809846 1.018596396 1.042669257 1.071194442 1.063344942 348661324 ppx Propionibacterium avidum ATCC 25577 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium;species:Propionibacterium avidum; 0.86207985 0.852242342 0.841520089 0.82197875 0.875847543 0.83647483 0.83880263 0.808993494 0.808344661 0.862921207 0.865103775 0.873552024 0.803393228 0.826972652 392384227 exaa(moxf) Azospirillum brasilense Sp245 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum brasilense; 1.080844015 1.100541566 1.079264609 1.073657721 1.032596616 1.094367064 1.028792653 1.07610712 1.066459385 1.05580855 1.044527241 1.06859933 1.016647501 1.054752185 0.994690937 1.03372737 1.062977146 1.07644315 347738122 rubisco Azospirillum amazonense Y2 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum amazonense; 1.168038714 1.124502939 1.13341364 1.158693245 1.125645172 1.186671495 1.136716797 1.119324797 1.144620211 1.138964732 1.130859147 1.146983554 1.096994614 1.126700412 1.122771867 1.153392402 1.149400506 1.126673262 221533576 nhh Rhodobacteraceae bacterium KLH11 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 0.905788964 0.859288721 0.836930318 0.856119891 0.87371213 0.852666908 0.824455413 0.821464073 0.851571736 0.841345039 302409724 amyA Verticillium albo-atrum VaMs.102 Carbon Cycling Carbon degradation Starch superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticilium;species:Verticillium albo-atrum; 1.20693287 1.177900304 1.174167833 1.196628667 1.176791672 1.211233386 1.16570512 1.18102496 1.182292363 1.188242666 1.19292654 1.191233995 1.153548872 1.153733241 1.104490062 1.167910932 1.192649927 1.169150569 88866204 pcag Jannaschia sp. CCS1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Jannaschia; 0.953026604 0.931531119 0.936008351 0.938561316 0.897926133 0.91070438 0.892331246 0.941938961 0.939297063 0.91936523 0.896246581 0.946863739 0.915178749 0.904122682 0.902932024 0.93486888 0.93449131 0.940027806 74053812 one_ring_12diox uncultured bacterium Organic Remediation Aromatics Other aromatics superkingdom:Bacteria; 1.057173944 1.033535438 1.002521301 1.067008016 1.034818786 1.053813073 1.01957855 1.018207895 1.042733709 1.015522987 1.107860511 1.022362954 0.983318158 0.986059267 0.958433754 0.995105297 1.083048941 1.047878616 388011996 amyA Pseudomonas synxantha BG33R Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas synxantha; 0.842878098 0.820883441 0.832569698 0.82129306 0.831626789 0.862953232 0.846651501 0.842231499 0.885741273 0.840594168 0.831309578 0.853079423 0.833181637 375142655 limeh Mycobacterium rhodesiae NBB3 Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 0.819228524 0.913820945 0.802927025 0.997818804 0.822361471 0.832929843 0.818736655 1.029903691 0.803466444 0.860868722 0.864417161 0.867806966 61808006 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.810640982 0.875232814 0.801390319 0.810405749 0.843027698 0.908796324 184204799 mer bacterium Ellin514 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobia subdivision 3;genus:Pedosphaera;species:Pedosphaera parvula; 0.836674853 0.853087369 0.873835432 0.832154157 0.856558412 0.766118426 0.836290851 0.840321102 302413179 mannanase Verticillium albo-atrum VaMs.102 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticilium;species:Verticillium albo-atrum; 0.804295489 0.860392081 194337821 frdA_rTCA Pelodictyon phaeoclathratiforme BU-1 Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Pelodictyon;species:Pelodictyon phaeoclathratiforme; 1.082172325 0.925674334 0.970496184 1.014410454 0.939014731 0.885300121 0.853582707 0.8789887 0.995279941 0.944120509 0.947768122 0.914022513 0.98349551 0.932757065 0.903050895 0.90501102 0.985216972 0.95831963 27376338 phn Bradyrhizobium japonicum USDA 110 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 0.861866174 0.872243339 0.892871204 0.829548544 0.862025065 0.883606672 0.827583581 0.858646164 0.800824821 0.861908353 0.876426037 0.84495256 0.831584875 0.826255804 0.886199521 0.883985765 308227111 pgk Oscillochloris trichoides DG6 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Oscillochloridaceae;genus:Oscillochloris;species:Oscillochloris trichoides; 0.887289573 1.026357212 0.917620832 0.909870274 0.935835811 0.99147981 0.848184905 0.902289675 0.867959602 0.927382545 0.897767844 0.948259962 0.900382283 0.942353158 0.911130468 0.869105281 0.938993316 0.943940655 389577742 amyA Eubacterium cellulosolvens 6 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Eubacteriaceae;genus:Eubacterium;species:Eubacterium cellulosolvens; 0.922231159 0.876684903 0.938330447 0.895413286 0.908587449 0.942357294 0.822625034 0.873254338 0.920133306 0.90430278 0.907574629 0.85849597 0.902040107 0.931043249 0.877494019 0.879331872 0.942388668 0.915116023 395777495 catechol Streptomyces acidiscabies 84-104 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces acidiscabies; 1.171174797 1.174070193 1.173670244 1.157121725 1.143149213 1.151221785 1.122890027 1.128520787 1.14804341 1.12521463 1.113981217 1.199512989 1.121591314 1.122647564 1.14420522 1.162667824 1.215937996 1.182105922 50982470 pmoa uncultured bacterium Carbon Cycling Methane Methane oxidation superkingdom:Bacteria; 0.887125267 0.899264261 0.846970305 0.96560507 0.87291791 0.913994206 0.870680374 0.884069483 0.893505284 0.92777017 0.859585049 0.898671617 0.893659818 0.863201802 0.831126221 0.837721393 0.909513577 0.891698728 89073581 mer Photobacterium sp. SKA34 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium; 0.8615011 0.820014834 0.823338653 0.92987373 0.808783217 0.857136508 0.844943385 0.873206311 0.889127029 0.864115765 0.894003781 0.807985357 0.827704761 0.861349123 0.830547676 86158438 terc Anaeromyxobacter dehalogenans 2CP-C Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter;species:Anaeromyxobacter dehalogenans; 0.886613399 0.931626211 0.900276968 0.85833232 0.913969903 0.958786719 0.911830306 0.879129144 0.844735749 0.916343444 0.900783239 0.876206551 0.901487827 0.86323718 0.852571675 0.872387192 0.837921382 0.908798008 148550997 mdlc Sphingomonas wittichii RW1 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 0.814565076 0.82081006 169016205 amyA Arthrobacter chlorophenolicus A6 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 1.089998147 1.088097913 1.106168189 1.126851687 1.101990156 1.126305675 1.111379441 1.116083733 1.084046828 1.095530654 1.096029762 1.101602714 1.087773796 1.059353873 1.052787375 1.063705186 1.137947242 1.105336483 344343641 CsoSCA Marichromatium purpuratum 984 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Marichromatium;species:Marichromatium purpuratum; 1.274729452 1.267808821 1.24771548 1.261771399 1.228838317 1.270927387 1.243888565 1.231426818 1.262644362 1.238929878 1.23967964 1.265723654 1.232887114 1.203910455 1.23409003 1.251916272 1.26408181 1.251334019 413959889 catechol Burkholderia sp. SJ98 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 1.121266301 1.038414789 1.047223106 1.05441438 0.973442831 1.016858096 0.985141522 0.998426931 1.042754351 1.009026082 1.010842846 1.010056751 0.981403525 0.963939281 0.929928949 0.948832532 1.050007896 1.02378141 56678352 rd Ruegeria pomeroyi DSS-3 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 1.111953031 1.130241223 1.097418454 1.143491298 1.133558287 1.119905031 1.112977742 1.107016238 1.107837887 1.092309005 1.069730754 1.095617439 1.101147545 1.058122051 1.092749925 1.097568222 1.127127632 1.083075675 225194134 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.854038206 0.802857579 0.84065479 0.939267259 0.81441778 291089364 acetylglucosaminidase Edwardsiella tarda ATCC 23685 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Edwardsiella;species:Edwardsiella tarda; 0.852813545 0.839819971 0.77139014 0.825711734 0.786231533 0.807621596 85111735 phenol_oxidase Neurospora crassa OR74A Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Neurospora;species:Neurospora crassa; 1.051919805 1.023027116 1.004755466 1.04428896 0.962986542 1.035134337 0.973091262 1.01577207 1.059071226 1.017287393 0.979259345 1.008765047 0.943971439 0.984330899 0.962949342 1.010851926 1.070455073 1.019394399 383105931 amyA Spirochaeta africana DSM 8902 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Spirochaeta;species:Spirochaeta africana; 0.837206862 0.830692314 0.818184678 0.825581974 0.840311769 0.819420404 0.872407376 0.811922062 0.867380711 0.818468798 0.884027705 0.903793989 116622344 mdla Solibacter usitatus Ellin6076 Organic Remediation Aromatics Aromatic alpha hydroxy acid superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 1.335493406 1.275010736 1.326619649 1.259019224 1.249988109 1.234083928 1.226911167 1.294665378 1.271431042 1.248622104 1.243446216 1.299616813 1.25568405 1.203390453 1.222693518 1.266375484 1.29181032 1.272928467 256824803 amyA Kytococcus sedentarius DSM 20547 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dermacoccaceae;genus:Kytococcus;species:Kytococcus sedentarius; 0.84161834 0.843250372 0.825345824 0.822313639 0.818642431 0.82194624 0.84242573 0.822585379 291565882 CsoS1_CcmK Arthrospira platensis NIES-39 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Arthrospira;species:Arthrospira platensis; 0.794337577 0.803756642 0.811935373 0.806399719 0.840507226 0.767654515 0.823313687 0.812764764 0.795835197 0.793528963 0.776908706 120405199 mhpa Mycobacterium vanbaalenii PYR-1 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 0.916533619 0.985266723 0.873134228 0.934474727 0.955427795 0.977513325 0.907351739 0.93000367 0.94058079 0.9678163 0.91772696 0.901975372 0.913283743 0.921330067 0.894078323 0.927048968 0.980764459 0.976512228 255707990 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.989085459 1.037855429 0.982549208 1.049433911 1.047498224 1.022902333 1.042353968 1.047866932 1.043074573 1.019322794 0.987190122 1.004324802 1.037118031 1.033377313 0.933473744 1.025970468 1.039877076 1.075289302 358375597 tfda Aspergillus kawachii IFO 4308 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus kawachii; 0.834972212 0.806415318 0.823510309 0.842118755 0.856336106 0.798337336 0.939393277 0.872472368 0.866635317 0.899409902 0.996968351 0.886739704 0.833674653 0.799393401 0.812875838 0.843467858 0.824565471 0.851054851 281199024 CsoS1_CcmK Raphidiopsis brookii D9 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Raphidiopsis;species:Raphidiopsis brookii; 0.866056641 0.925010838 0.805294937 0.910541742 0.89475497 0.874241079 0.930943709 0.868308683 0.86685364 0.94035164 0.845028364 0.876809755 0.896950531 0.880470608 0.885710116 0.864007085 0.882590707 119402187 cellobiase Aspergillus clavatus NRRL 1 Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 0.921159294 0.921762914 0.904652708 0.920739845 0.894713167 0.926603443 0.947732025 0.922159934 0.943066991 0.923759954 0.86218072 0.873212225 0.818983093 0.872140999 0.824430334 0.869480217 0.832525847 0.862762473 229808987 amyA Collinsella intestinalis DSM 13280 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Collinsella;species:Collinsella intestinalis; 0.916450645 0.929399816 0.917491519 0.893843191 0.873902222 0.925749721 0.861022575 0.887567041 0.898663257 0.922892819 0.857104248 0.888189042 0.902017177 0.86054957 0.84597655 0.856975029 0.934922564 0.919171856 256680807 mannanase Streptomyces sp. SPB78 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 1.023962398 1.030564481 1.018865251 1.018697248 1.009071175 1.042537328 0.993429591 0.990384811 0.974512562 0.990202656 1.004742095 0.994837114 1.015515684 0.980853258 0.992735452 0.970514244 1.029105603 0.994418159 1813636 nifh Frankia sp. Nitrogen Nitrogen fixation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 0.875211816 0.871104605 0.859640195 0.809907277 0.896196569 1.067778576 0.821487181 0.871403431 0.899522451 353201393 rgl Paenibacillus lactis 154 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus lactis; 0.803751281 0.897155806 0.842192094 0.886617828 0.824193432 0.841318934 0.822710596 0.799021218 0.823659556 0.875627124 310761375 nitro Achromobacter xylosoxidans A8 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter;species:Achromobacter xylosoxidans; 0.97312238 0.996112636 0.988988069 1.007646046 1.039267553 1.027812206 1.017749602 0.995084538 0.967252653 1.003941994 1.000778907 1.006578668 1.025712899 0.981617766 0.973907946 1.016931547 1.001292458 0.982754085 365815451 cysJ Patulibacter sp. I11 Sulfur Reduction NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Solirubrobacterales;family:Patulibacteraceae;genus:Patulibacter; 1.088108608 1.104243516 1.064784328 1.060002376 1.058384722 1.130595418 1.057626638 1.033657931 1.033906279 1.115865709 1.09041711 1.071682641 1.102269901 1.114158659 0.997117276 1.061210081 1.095584419 1.084569502 94498210 B_lactamase_A Sphingomonas sp. SKA58 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 0.975494798 0.983909568 1.035865603 0.959676513 0.998165258 1.019533655 0.966402122 0.942502272 0.979234964 0.962873811 1.039134507 0.94513669 0.96641726 0.979489551 0.978533981 0.956140218 0.986374451 1.012989681 212661519 ppx Bifidobacterium catenulatum DSM 16992 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium catenulatum; 0.79846202 0.818178027 269096354 cellobiase Sanguibacter keddieii DSM 10542 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Sanguibacteraceae;genus:Sanguibacter;species:Sanguibacter keddieii; 1.083209142 1.067729859 1.075933523 1.091831259 1.042822686 1.089989309 1.056429464 1.03807026 1.064538429 1.056156472 1.046427967 1.064554873 1.037244784 1.030856601 1.040418284 1.036961529 1.108377388 1.045294564 158142218 cysI Sinorhizobium fredii Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium; 0.986475922 0.952044264 0.946437143 0.94931183 0.930317773 0.967092999 0.895351228 0.905492974 0.972268954 0.931129741 0.952437081 0.971653412 0.962458334 0.949468884 0.973092235 0.951678016 0.970515998 0.947603429 319764947 badi Alicycliphilus denitrificans BC Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Alicycliphilus;species:Alicycliphilus denitrificans; 1.127069267 1.152544057 1.114075459 1.125508351 1.110202623 1.120017482 1.081262089 1.069592452 1.095805589 1.086640541 1.098366014 1.092464177 1.109274645 1.069014805 1.059724866 1.097784357 1.100830156 1.08395426 29293360 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.778182942 0.849318378 0.777226483 0.778151119 0.876123906 0.844006171 0.829464451 334563678 ppx Corynebacterium bovis DSM 20582 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium bovis; 0.811382476 0.796892656 0.787602248 0.877918497 0.862803492 0.774635485 0.831831624 0.836447802 0.81403299 0.80956765 0.826210565 0.818081361 0.825048379 0.804654711 89347539 terc Rhodoferax ferrireducens T118 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Albidiferax;species:Albidiferax ferrireducens; 0.995485937 1.023318739 0.95649014 1.003731782 0.973475586 0.997556775 0.96005769 0.946396559 0.992266461 0.976297974 0.982584305 0.989888525 0.920635071 0.952475248 0.937599853 0.937073594 1.017156128 1.033812586 32487224 linb Nonomuraea sp. ATCC 39727 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Nonomuraea; 0.853502521 0.862651965 0.82476324 0.842043226 0.83723917 0.807157769 0.797719411 0.807766401 0.852745174 0.871863939 30525504 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.845418067 0.794177687 0.806655734 0.882254182 0.810251611 0.801796795 0.798602068 0.948010745 0.830127676 0.801063074 0.89593233 0.819414436 339883116 narg Actinomyces sp. oral taxon 448 str. F0400 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 448; 0.81979043 0.808249278 0.864532755 0.839443573 0.873757894 119962016 ppk Arthrobacter aurescens TC1 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter aurescens; 1.022543123 1.042702909 1.032489892 1.02724024 1.04057363 1.069598349 0.984766693 0.949948085 1.000082177 0.979755517 0.986841257 0.981185677 0.981496322 0.978693707 0.979276875 0.979972519 1.026319414 1.03967371 88179725 protease_serine_fungi Chaetomium globosum CBS 148.51 Carbon Cycling Carbon degradation protein superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 0.763552177 0.800244053 0.745903018 0.869925552 114543923 tktA Roseovarius sp. HTCC2601 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pelagibaca;species:Pelagibaca bermudensis; 1.578243887 1.527995453 1.526787468 1.54104273 1.510242248 1.592008204 1.525445901 1.545220429 1.505064884 1.510351121 1.515746842 1.509334263 1.477550368 1.486093538 1.460617941 1.499390688 1.561194076 1.526520527 337750453 pme Paenibacillus mucilaginosus KNP414 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 1.286158446 1.266426468 1.270521671 1.286266363 1.261851686 1.278034883 1.24982376 1.266879302 1.267040726 1.262878026 1.277841831 1.281892422 1.243135916 1.220169577 1.211203123 1.231937864 1.286561951 1.271986949 209401830 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.940272819 0.889951501 0.854210188 0.972524153 0.902223889 0.883444727 0.89304448 0.861843316 0.865804638 0.855316781 0.831590725 0.856696462 0.834574949 0.934629921 0.901060527 359799725 terc Achromobacter arsenitoxydans SY8 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter;species:Achromobacter arsenitoxydans; 0.927315325 0.965208115 0.94578164 0.972284568 0.928293601 0.948801351 0.903542434 0.959082284 0.94940438 0.910104543 0.953299232 0.968028953 0.903818798 0.910379333 0.931920212 0.911502993 0.941033766 0.956980539 121529335 dehh Ralstonia pickettii 12J Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 1.147486023 1.070842501 1.136647233 1.14590093 1.236679106 1.158595256 1.189512846 1.146629965 1.148223067 1.1705626 1.184648507 1.162270529 1.131353373 1.126797614 1.126462636 1.159390612 1.113918873 1.130466253 33391309 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.142669033 1.111835066 1.051617241 1.104842618 1.077504216 1.09029663 1.067071115 1.035799317 1.060006604 1.056061538 1.06908104 1.071241642 1.077291764 1.031576981 1.029741714 1.054034369 1.118205305 1.073690734 262182429 fthfs Corynebacterium aurimucosum ATCC 700975 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium aurimucosum; 0.802373626 0.839699721 0.934996122 0.817181735 0.843508355 0.828962944 0.844762193 0.830823837 0.863843356 0.840307544 242277943 CsoS1_CcmK Desulfovibrio salexigens DSM 2638 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio salexigens; 1.098438348 1.060084569 1.049413319 1.063937067 0.989840182 1.044145077 0.934668739 0.940634226 1.043240321 1.017928858 1.024558265 1.02124865 1.01539799 1.016826007 0.9657398 0.967148698 1.072176465 1.027393257 164456208 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 0.940307552 0.911011758 0.937149741 0.924641221 0.807800334 0.885795271 0.850575176 0.911250739 0.935288777 0.903622247 0.858792753 0.874009206 0.852719736 0.894840818 0.856244991 0.912851559 0.921107799 288574225 fthfs Dethiosulfovibrio peptidovorans DSM 11002 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Synergistetes;class:Synergistia;order:Synergistales;family:Synergistaceae;genus:Dethiosulfovibrio;species:Dethiosulfovibrio peptidovorans; 0.957837494 0.979937308 0.927038964 0.953829121 0.896364594 0.904887825 0.852517488 0.920480269 0.945235222 0.932725139 0.902743415 0.89710985 0.883306728 0.959669821 0.855009522 0.879572981 0.946716917 0.923549703 219866846 PRI Cyanothece sp. PCC 7425 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 0.856471043 0.833242438 0.823460011 0.886618194 0.814847544 0.850295758 0.815606948 0.817717986 0.883446242 0.830761618 0.84810024 0.840942043 0.869053168 0.877595632 0.862648919 195941115 ppx Escherichia coli O157:H7 str. EC4024 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia coli; 1.611682121 1.527969644 1.520991702 1.530634752 1.482522941 1.572378951 1.495260142 1.504892601 1.524134009 1.504841095 1.515122551 1.491924731 1.491874222 1.460330316 1.475067006 1.481421108 1.600595614 1.489979978 214038437 ppx marine gamma proteobacterium HTCC2148 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 0.852964505 0.825321357 0.838937872 0.853376902 83574848 tktA Rhodospirillum rubrum ATCC 11170 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum rubrum; 0.996826142 0.997055028 0.976393812 0.955284948 0.978388833 0.961355156 0.989781912 0.922246067 1.038699718 1.031242201 0.981298277 0.965863237 0.965572006 0.953282326 0.893704457 0.948680088 0.981764666 0.99080581 300112756 FBPase Nitrosococcus watsonii C-113 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Nitrosococcus;species:Nitrosococcus watsonii; 0.987177144 1.054415767 1.064676543 1.021769513 1.026629213 1.04297689 1.045522913 1.027468779 1.019635518 1.049838003 1.021257057 1.035806829 1.007462319 0.997542356 1.016318387 1.003611831 1.040011533 1.022958752 72162424 terc Thermobifida fusca YX Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Thermobifida;species:Thermobifida fusca; 0.782923853 0.839370522 0.832659889 0.785591249 0.84118777 0.869799167 0.837446422 0.801956495 0.744025652 0.819844542 161382231 alkb Oceanibulbus indolifex HEL-45 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanibulbus;species:Oceanibulbus indolifex; 1.245110671 1.217384695 1.219657266 1.258218382 1.196485899 1.233585629 1.185651008 1.215074796 1.205660127 1.203787089 1.19611661 1.206393177 1.18820878 1.181527825 1.188174269 1.222932547 1.241448789 1.201577689 388537519 urec Advenella kashmirensis WT001 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Advenella;species:Advenella kashmirensis; 1.142444013 1.125525161 1.115343557 1.1021657 1.097254441 1.129174692 1.094345587 1.109152898 1.100374036 1.109802255 1.080709329 1.093003872 1.094951669 1.111036751 1.04289611 1.114940555 1.122022198 1.122554744 115257629 nhh Rhizobium leguminosarum bv. viciae 3841 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 0.878408786 0.914231352 0.89300409 0.870491629 0.901258676 0.857956794 0.85823589 0.852211827 0.863363398 0.835828085 0.908740907 0.875364169 0.831074187 0.982446939 0.819869265 0.842254299 0.917393764 271501785 trze Dickeya dadantii Ech586 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya dadantii; 0.839657572 0.838003085 0.871320172 0.793221557 0.81580716 0.84051922 0.870123568 0.817612698 260645007 badh Streptomyces scabiei 87.22 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces scabiei; 1.219249476 1.238630626 1.191837818 1.191924817 1.176712427 1.234096317 1.166436247 1.188448691 1.198679325 1.181789748 1.167712008 1.184508474 1.15162465 1.158052333 1.14377011 1.15979346 1.212437852 1.203280074 148252062 FBP_aldolase Bradyrhizobium sp. BTAi1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.818880336 0.850494806 0.860841872 0.875716111 0.822898536 0.83185182 0.811248169 0.820079244 0.815897601 0.89016203 0.902666393 398881391 badh Pseudomonas sp. GM60 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.857855387 0.870827049 0.906346033 0.868024576 0.83426769 0.82999901 0.824953359 0.786195711 0.831899882 0.79913291 0.826568453 0.864416344 0.809697649 0.854937557 0.883255177 1.163178644 53758644 exaa(moxf) Methylococcus capsulatus str. Bath Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylococcus;species:Methylococcus capsulatus; 1.336099496 1.289217261 1.297008436 1.307921179 1.285646489 1.323574949 1.290357433 1.273528833 1.276196014 1.292930075 1.289092325 1.310600669 1.257001944 1.249625435 1.234797796 1.269692289 1.320199413 1.288418768 338211391 amyA Runella slithyformis DSM 19594 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Runella;species:Runella slithyformis; 0.93282795 0.833856223 0.851024233 0.913770715 0.874847747 0.85596484 0.892532889 0.874709748 0.832036461 0.827656117 0.87378714 0.859822301 0.907806037 0.846451174 303278902 mg_chelatase Micromonas pusilla CCMP1545 Secondary metabolism Pigments Chlorophyll superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Mamiellophyceae;order:Mamiellales;genus:Micromonas;species:Micromonas pusilla; 0.904256611 0.990873444 0.91934919 0.954570996 0.927049486 0.965667747 0.960384103 0.933620215 0.917240247 0.955907168 0.946023777 0.932936839 0.924716371 0.936106361 0.941051998 0.948014271 0.971776787 0.970814169 87281271 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.844394212 0.983064297 0.825278867 0.923616629 0.884754805 0.924269046 0.851359548 0.867557261 0.84205301 0.913232291 0.889255452 0.893648311 0.860616755 0.835062869 0.896034292 0.86454078 0.909953182 99030630 ppk uncultured bacterium Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria; 1.166278969 1.141898193 1.156150669 1.133652126 1.067332018 1.146545604 1.07942891 1.118565106 1.131691339 1.136287787 1.099230823 1.092749265 1.070504747 1.104522918 1.048625481 1.089444839 1.150043853 1.140006463 219952012 nhh Methylobacterium nodulans ORS 2060 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 1.117035843 1.18234832 1.126868482 1.137051291 1.158512936 1.202609984 1.091847201 1.071643893 1.095361894 1.13935188 1.089365735 1.102883172 1.098049261 1.128631321 1.02991788 1.124363052 1.158239883 1.174860932 119719675 AACT_DiC4HB Thermofilum pendens Hrk 5 Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermofilaceae;genus:Thermofilum;species:Thermofilum pendens; 0.774373119 0.808723086 0.829382815 0.834234502 67157834 glucoamylase Azotobacter vinelandii AvOP Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Azotobacter;species:Azotobacter vinelandii; 1.200035699 1.208201853 1.214773128 1.23039188 1.20624181 1.208279561 1.204951127 1.236094737 1.19456483 1.168992203 1.207011397 1.220410491 1.151664688 1.161471004 1.148228939 1.343490513 1.185494246 1.197352682 379709026 alkb Nocardia cyriacigeorgica GUH-2 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia cyriacigeorgica; 1.095013307 1.037903176 1.082112885 1.127205068 1.110292895 1.081139208 1.087130014 1.112990556 1.099007185 1.056836704 1.077615425 1.099153452 1.064447144 1.039969551 1.033777476 1.039303517 1.08347991 1.018305602 399229628 one_ring_12diox Mycobacterium smegmatis str. MC2 155 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 1.004229809 0.955716914 0.979117583 1.011284431 1.021822546 0.971982036 0.974619119 1.002388427 0.983510226 0.988677269 0.954712032 1.038328923 0.99425992 0.950919554 1.025039194 0.997949315 0.989129515 0.990725766 116611564 amyA Arthrobacter sp. FB24 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 0.94546222 0.957764209 0.925170478 0.967916463 0.966321445 0.996122183 0.934871825 0.969268604 0.924692888 0.975507343 0.945502543 0.978294424 0.975954188 0.966141949 0.94377008 1.003275971 0.976414793 0.947889265 307746113 nirb Arthrobacter arilaitensis Re117 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter arilaitensis; 0.909310903 0.901887142 0.8996626 0.943730069 0.870562085 0.956213866 0.872507745 0.862931362 0.897873909 0.888272768 0.930055473 0.943659282 0.893955929 0.877115908 0.885261992 0.935293112 0.900685048 0.85904436 327544889 PRK Oxalobacteraceae bacterium IMCC9480 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae; 0.844321077 0.924586047 0.888765553 0.823219054 0.92958111 0.797233089 0.823749639 0.851189891 0.876682948 0.944304583 0.942574558 0.868816342 0.861082929 0.844923677 0.847967365 0.918431599 0.892383093 154183479 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.830751471 0.844686151 0.841449241 0.845096035 0.881174669 0.820332815 0.812575801 0.869702262 0.831836275 0.802986459 0.842015607 0.877500754 359688400 chnb Leptospira licerasiae serovar Varillal str. MMD0835 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Leptospiraceae;genus:Leptospira;species:Leptospira licerasiae; 0.852255828 0.831188864 0.811475792 0.81533886 0.812274143 0.838305124 0.791468363 0.771839683 0.860099121 62003549 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.949689031 0.768132944 339328559 tktA Cupriavidus necator N-1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 0.842745277 0.83927686 0.790225658 0.815137967 0.807749542 0.803869459 0.857139466 0.822665621 0.795964468 0.840158932 0.837029557 0.888096725 323317832 chitinase Vibrio sinaloensis DSM 21326 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio sinaloensis; 1.09526558 1.13028636 1.040001939 1.105172545 1.065210015 1.079985059 1.059972821 1.021653525 1.032914622 1.037419554 1.05273581 1.077800262 1.057341058 0.998372759 0.992596213 1.026106406 1.055799557 1.032903544 6978931 ara Streptomyces chartreusis Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 0.937742025 0.884527285 0.969724541 0.931139501 0.937429946 0.975890675 0.966429434 0.934377169 0.919471005 0.9444683 0.914513313 0.937316652 0.884039774 0.893687135 0.889236291 0.912109966 0.937274658 0.918524597 219677860 ppx gamma proteobacterium NOR51-B Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 1.223298567 1.209004406 1.203076937 1.203190887 1.208514451 1.240635266 1.210517365 1.204440742 1.181102698 1.199470524 1.197522328 1.206797298 1.186344236 1.166537965 1.158795932 1.176740347 1.218557395 1.222168998 262395184 arsc Vibrio sp. Ex25 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 0.9605506 0.926991755 0.933644301 0.949845034 0.92933377 0.923836671 0.932944846 0.940106133 0.94613178 0.962481664 0.895700874 0.940691022 0.885603861 0.938949368 0.862395156 0.889387962 0.884931122 0.901530603 260063171 amyA Robiginitalea biformata HTCC2501 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Robiginitalea;species:Robiginitalea biformata; 0.928542454 0.896888274 0.913462549 0.988985306 0.850932072 0.892373037 0.931169332 0.947337339 0.900596676 0.901841488 0.869064635 0.941833469 0.817079545 0.832931514 0.802789151 0.847897604 0.871862434 0.859037824 379990521 dsrB uncultured bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.901712588 0.882189631 0.912183396 0.970833391 0.864233608 0.885323193 0.842207256 0.903222436 0.895721646 0.867908807 0.910576663 0.899190428 0.832803698 0.847533732 0.847298645 0.884204951 0.931876351 0.865561647 355533111 mmox Mesorhizobium amorphae CCNWGS0123 Carbon Cycling Methane Methane oxidation superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium amorphae; 1.187728122 1.176843734 1.146170058 1.168476643 1.129933754 1.191363823 1.165386063 1.165448924 1.173295511 1.165000541 1.166892042 1.185800231 1.112867665 1.11416946 1.116011907 1.117711031 1.158952244 1.146116018 149184721 B_lactamase_A Erythrobacter sp. SD-21 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter; 0.830469123 0.859492962 0.813487181 0.792244853 0.827934192 0.81095222 0.809735853 0.821606045 0.859373849 159027940 CsoS1_CcmK Microcystis aeruginosa PCC 7806 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Microcystis;species:Microcystis aeruginosa; 0.924315589 0.976732972 0.989164766 0.989742888 0.946986537 0.931878908 0.873398663 0.900148639 0.977560036 0.95240956 0.972004056 0.953314914 0.921189361 0.914501509 0.914808748 0.944723613 0.964800536 0.958469794 357388903 urec Kitasatospora setae KM-6054 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Kitasatospora;species:Kitasatospora setae; 1.413799826 1.329371437 1.339486259 1.369203905 1.307833719 1.395480426 1.309704407 1.348048593 1.345090246 1.332849725 1.339207009 1.334585138 1.309265174 1.341263251 1.302196187 1.336115292 1.374822349 1.311540342 15616259 amyA Bacillus halodurans C-125 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus halodurans; 0.908869448 0.8700794 0.853310946 0.979541841 0.894207293 0.949736589 0.859094572 0.920309934 0.941070833 0.896980974 0.846354152 0.932384703 0.872540929 0.858791117 0.924237671 0.913056659 0.969793763 0.907003054 388255830 nirb Cellvibrio sp. BR Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio; 1.163184744 1.144393513 1.135025038 1.136414127 1.102541987 1.135356587 1.106138478 1.109173753 1.138811429 1.127138358 1.113985949 1.119035013 1.099696072 1.108909605 1.074111162 1.113005652 1.152308966 1.158567175 295132628 arsc Zunongwangia profunda SM-A87 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Zunongwangia;species:Zunongwangia profunda; 0.820447135 0.792648938 0.840840502 0.773014981 118435893 rubisco Stappia aggregata IAM 12614 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 1.156608016 1.17495901 1.127030519 1.163055669 1.137798703 1.187409906 1.155131839 1.164689666 1.134637128 1.139910925 1.130766794 1.140956296 1.145123701 1.133431539 1.121037354 1.117953237 1.15302016 1.118722334 169607279 tannase_Cdeg Phaeosphaeria nodorum SN15 Carbon Cycling Carbon degradation Tannins superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Phaeosphaeriaceae;genus:Parastagonospora;species:Parastagonospora nodorum; 0.974080207 0.915366935 0.842141286 0.913551725 0.871154799 0.799078799 0.869241818 0.927444273 0.829158509 0.818804798 0.872004143 0.816857347 0.822216634 0.88131408 0.867448211 87281300 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.83139844 0.809476271 365867550 xylanase Streptomyces sp. W007 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 1.286839677 1.252822303 1.251749148 1.246658353 1.224751266 1.268413092 1.174835371 1.235754925 1.23222023 1.232284535 1.23639164 1.223403621 1.206781704 1.218845184 1.182868603 1.220726662 1.25869603 1.230443965 126179880 nifh Methanoculleus marisnigri JR1 Nitrogen Nitrogen fixation NA superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;family:Methanomicrobiaceae;genus:Methanoculleus;species:Methanoculleus marisnigri; 0.868678234 0.846528195 0.900457971 0.901592087 0.816879525 0.870241115 0.879347444 0.883858474 0.830413261 0.818375396 0.823699557 0.812104445 0.813508278 0.832163198 0.894900537 0.863019749 307772005 alkk Roseibium sp. TrichSKD4 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseibium; 0.791312487 0.806177646 292674507 bphF1 Sphingobium japonicum UT26S Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium;species:Sphingobium japonicum; 0.841552407 0.787313292 0.850780445 99030634 ppk uncultured bacterium Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria; 0.801080467 0.802076168 0.84833692 0.822646249 0.896037193 0.830584563 0.806481315 0.819500314 89107145 xylanase Escherichia coli W3110 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia coli; 0.787267179 0.790119687 355333711 endoglucanase Pseudoxanthomonas spadix BD-a59 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Pseudoxanthomonas;species:Pseudoxanthomonas spadix; 1.13508168 1.095589477 1.09641444 1.107619972 1.09112991 1.11604331 1.123389471 1.111392148 1.100282611 1.096506495 1.095869408 1.097227664 1.128061644 1.057273757 1.092521585 1.055818074 1.115504584 1.066661974 300777468 tetx_resistance Chryseobacterium gleum ATCC 35910 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Chryseobacterium;species:Chryseobacterium gleum; 0.899906474 0.874266636 0.945281536 0.959181283 0.951192747 0.914042835 0.957043095 0.944771106 0.924548806 0.940882264 0.93763196 0.958208413 0.895294747 0.861567726 0.877737675 0.880019188 0.917136924 0.888201538 164455370 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 0.874796399 0.896296595 0.923790904 0.883918726 0.901658284 0.866562337 0.910661963 0.905755809 0.880889095 0.867985501 0.884009137 0.907653061 0.814733387 0.834531016 0.869025936 0.904429827 0.932108254 340777217 TIM Acetobacter aceti NBRC 14818 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acetobacter;species:Acetobacter aceti; 0.903158419 0.888428705 0.908926972 0.917791158 0.978000146 0.899885538 0.912097331 0.882410444 1.003107997 0.952361556 0.901012601 0.99004844 0.910236096 0.944311157 0.905893378 0.873636802 0.883979746 0.886960801 364561199 amyA Hafnia alvei ATCC 51873 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Hafnia;species:Hafnia alvei; 0.982261766 1.082939647 0.936136912 1.178331402 1.151050463 0.971809695 1.08006435 1.017388753 1.088967054 0.988489698 1.021208042 1.205340982 1.003061369 0.929810942 0.91577444 1.025770516 1.005448262 0.921592593 302843220 gdh Volvox carteri f. nagariensis Nitrogen Ammonification NA superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Chlorophyceae;order:Chlamydomonadales;family:Volvocaceae;genus:Volvox;species:Volvox carteri; 1.063967437 1.002716397 1.043203271 1.020804942 1.057256137 1.023040504 1.021702095 1.004114631 1.00183098 1.048821595 1.060997899 1.127227111 0.990858282 0.979684085 1.029472854 0.987268673 1.001037402 1.018672543 169866058 protease_serine_fungi Coprinopsis cinerea okayama7#130 Carbon Cycling Carbon degradation protein superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 1.389986233 1.337894976 1.33780476 1.401341842 1.331225958 1.3951215 1.332412537 1.379034198 1.340258007 1.363507573 1.35291658 1.347151239 1.310833304 1.297626666 1.332498606 1.38910418 1.321597919 115519025 soxY Rhodopseudomonas palustris BisA53 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 0.869393903 0.924921987 0.851643574 0.831412562 0.882365295 0.879660425 0.849754572 0.809905315 0.784317444 0.849033432 0.900151052 0.853110978 0.842892661 0.922287716 0.906535306 0.82834127 0.871599576 0.91195692 148254694 tktA Bradyrhizobium sp. BTAi1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.933413533 0.959637184 0.990605723 0.96014086 0.963838533 0.993313786 0.958834943 0.911672473 0.929401984 1.014207036 1.004339736 0.989932117 0.953310315 1.014856309 0.946161613 0.956557231 0.956500693 0.988360017 347580656 tktA Gluconacetobacter xylinus NBRC 3288 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter xylinus; 1.31085211 1.294572646 1.255805732 1.287043284 1.257795659 1.319585258 1.263277558 1.264215426 1.281559539 1.259335762 1.250782728 1.264691316 1.243983547 1.242759212 1.261330298 1.263363035 1.315656504 1.299523651 397688427 B_lactamase_A Pseudomonas stutzeri DSM 10701 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 1.034747206 1.02602741 0.993387211 1.001134882 0.98765478 1.018110711 0.967357263 1.008393619 1.009629716 1.008929711 0.981645845 0.989349966 0.993443481 0.985294123 0.98117007 0.992053237 1.008870971 1.027216174 109452530 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.781387854 0.775859247 0.790758993 0.777907001 0.793700088 0.817090637 315592587 bphF1 Thermaerobacter marianensis DSM 12885 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XVII. Incertae Sedis;genus:Thermaerobacter;species:Thermaerobacter marianensis; 0.809983744 0.814334638 0.836387025 0.815177836 0.805635499 0.823965472 0.857311314 0.811599768 0.794114663 0.852753261 26278822 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.85957599 0.841888221 0.815876302 0.810213682 0.806532378 0.833357313 0.801564665 0.813870554 0.813324232 371776970 ara Anaerophaga sp. HS1 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Marinilabiliaceae;genus:Anaerophaga; 0.960926336 0.897646975 0.881440386 0.872806664 0.860589684 0.850273132 0.897508829 0.936908174 0.908673552 0.870364841 0.867621861 0.950265269 0.810387197 0.901492331 0.876643023 0.885489969 0.916319227 338837122 cysJ Pseudomonas putida S16 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 1.426566705 1.395508528 1.390702049 1.376494957 1.367886986 1.438437957 1.366121297 1.381256113 1.367222818 1.376822955 1.410200789 1.38389311 1.333938582 1.326718957 1.323775217 1.362051368 1.419118862 1.394035796 90903261 aoxb uncultured bacterium Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 0.941733599 0.956228338 0.938722453 0.981797831 0.98802055 0.970496108 0.956129278 0.93459472 0.953534677 0.968784171 0.975725691 0.950711658 0.923142908 0.906359446 0.915212047 0.899645474 0.94892973 0.96119009 359823057 nhh Mycobacterium rhodesiae NBB3 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 1.150952157 1.093603096 1.114580616 1.092093786 1.063599826 1.137863463 1.046114024 1.075627469 1.093639729 1.123876325 1.0961231 1.083217549 1.084408589 1.105386961 1.115413576 1.094849741 1.09808197 1.110020591 49333367 exoglucanase Volvariella volvacea Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Pluteaceae;genus:Volvariella; 0.983276855 0.943451552 0.931541875 0.921801533 0.925790459 0.948400235 0.916002652 0.907254081 0.911545766 0.920178478 0.969032698 0.918134763 0.933167125 0.937190721 0.913822514 0.95235752 0.911072052 0.929888365 94310169 ben_bcla Cupriavidus metallidurans CH34 virulence NA NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 0.902116491 1.020298142 0.95149828 0.99148868 0.90828568 0.99783248 0.859658044 0.927838166 0.957247533 1.022452611 0.880049017 0.979432606 0.960168336 0.946668605 0.871803159 0.949937824 0.99186326 1.013546458 150955610 narg Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 1.232657584 1.196606699 1.187112085 1.199768858 1.187936111 1.219887476 1.184366494 1.197089942 1.200029344 1.173124287 1.177193335 1.17757131 1.167738716 1.146785014 1.148577588 1.15408905 1.219069892 1.19146438 89276731 pcpe Sphingomonas sp. BHC-A Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 1.121619561 1.089164317 1.079619118 1.111978054 1.030093333 1.075047363 1.035978645 1.060321961 1.0960575 1.05882811 1.04924592 1.069394492 1.02356861 1.037485356 1.011431176 1.051420768 1.12117334 1.097311428 114330819 ccmL Nitrosomonas eutropha C91 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas;species:Nitrosomonas eutropha; 0.864219048 0.861176861 0.863997773 0.907810318 0.904750412 0.872888445 0.895662693 0.889703012 0.897020616 0.902159922 0.8594534 0.885831127 0.830465477 0.873478626 0.851397267 380511336 exaa(moxf) Xanthomonas sacchari NCPPB 4393 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas sacchari; 1.033800912 1.042175789 1.019051533 1.03333075 0.994648604 1.05811176 1.013068025 1.011296668 1.02777459 1.044571263 0.997595012 1.028777614 0.967484431 1.075517044 0.988654063 0.980763512 1.031133069 1.023612751 113880421 tktA Synechococcus sp. CC9311 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 0.846588893 0.882179531 0.867383415 0.814188502 0.859217512 0.82696399 0.845276555 0.837757964 0.830755093 0.870291805 0.864035462 32895236 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.850691346 0.830406169 0.809874655 0.845698185 0.832648892 0.811184236 0.812672265 0.84016769 0.810473831 0.842693458 261281938 amyA Paenibacillus sp. Y412MC10 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 0.812672413 0.868432054 0.86871918 0.807527922 0.803588061 0.792039011 55791762 catechol_b uncultured bacterium Organic Remediation Aromatics Other aromatics superkingdom:Bacteria; 0.794785325 0.832789179 0.801468437 0.830869634 338738382 urec Hyphomicrobium sp. MC1 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium; 0.917713415 0.861231581 0.940386913 0.950176169 0.940820366 0.908941521 0.960449247 0.944907438 0.93641015 0.922241619 0.925487967 0.943511526 0.923143166 0.824415911 0.897037787 0.856495561 0.975619198 0.894668203 347664271 one_ring_23diox uncultured bacterium Organic Remediation Aromatics Other aromatics superkingdom:Bacteria; 0.760524385 0.800082882 77378443 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.988191845 0.964417065 1.021803329 0.988793137 0.992151349 0.966448583 0.965726491 0.95279346 0.990460458 0.984704121 0.989910142 0.952317338 0.95309897 0.923008659 0.901262217 0.913784872 1.002655018 0.972308649 83744449 poba Streptomyces hygroscopicus Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 0.830811684 0.878660601 0.81068587 0.83539024 0.836617677 0.926517483 0.862767921 0.889789444 0.872209013 0.848543467 0.805075548 0.845847141 0.819443038 0.819424499 0.856364343 328544276 FBPase Polymorphum gilvum SL003B-26A1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;species:Polymorphum gilvum; 1.355088338 1.306555842 1.336811708 1.347180836 1.321722014 1.384721864 1.340898029 1.343527885 1.316135577 1.320088757 1.330052803 1.316707486 1.312288898 1.293988275 1.274110976 1.302223725 1.355986581 1.290882759 227843089 ppk Mobiluncus mulieris ATCC 35243 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Mobiluncus;species:Mobiluncus mulieris; 1.159023992 1.007136778 0.95386585 0.945967783 0.885526713 0.917074466 0.867017738 0.943054686 0.957583226 1.018574872 0.952946568 0.987703596 0.89723169 0.872291482 0.850959675 0.915984378 0.975479784 336101515 fthfs Corynebacterium resistens DSM 45100 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium resistens; 0.905244416 0.883289688 0.828711839 0.944366561 0.854089345 0.885885844 0.83031349 0.90986638 0.925333065 0.862601878 0.83197519 0.884154578 0.882896831 0.901330851 0.887343729 292677081 xylanase Sphingobium japonicum UT26S Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium;species:Sphingobium japonicum; 0.811943433 0.788321987 0.828826226 0.831495995 0.863717067 312880746 ppx Aminomonas paucivorans DSM 12260 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Synergistetes;class:Synergistia;order:Synergistales;family:Synergistaceae;genus:Aminomonas;species:Aminomonas paucivorans; 0.806342035 0.791756009 0.84656252 0.869100435 0.86712515 0.848806664 0.880395683 0.875952858 0.88063763 0.919862073 0.859413557 0.834709432 0.831061641 0.820006139 296170919 pcag Mycobacterium parascrofulaceum ATCC BAA-614 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium parascrofulaceum; 0.762840556 0.82325644 0.876517439 0.818209317 0.776733865 0.827568768 0.798123089 151302180 aps_apra Desulfocaldus sp. Hobo Sulfur adenylylsulfate reductase NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;genus:Desulfocaldus; 1.451522492 1.422913133 1.426489235 1.45192305 1.445460322 1.398877366 1.422917526 1.442409031 1.433177913 1.398527301 1.430523493 1.458143651 1.426516814 1.384974096 1.443691084 1.407320366 1.436859698 1.38369202 150029013 fthfs Sinorhizobium medicae WSM419 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 1.237397008 1.310142558 1.139124834 1.293061813 1.256839697 1.16905931 1.308012064 1.319779112 1.31357272 1.199106634 1.183649204 1.193208683 1.276355428 1.279603267 1.094421911 1.168360772 1.208841072 1.28863854 54027104 cysJ Nocardia farcinica IFM 10152 Sulfur Reduction NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 1.491634693 1.460885213 1.442194784 1.463909233 1.410015273 1.494255575 1.427943708 1.443954085 1.431306831 1.428987295 1.428500625 1.432486406 1.406089535 1.385054792 1.37363292 1.422373646 1.486924421 1.39982831 73534068 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 1.037508896 1.027486849 0.990693263 1.024502827 0.982030365 0.995797444 0.956562553 1.009249947 0.994347727 0.968241713 0.977905419 1.008406881 0.982537652 0.968832704 0.936903634 0.97673856 1.01745366 0.944152115 189425041 mer Geobacter lovleyi SZ Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter lovleyi; 0.831647301 0.868759354 0.823322681 0.839558682 0.809304777 0.894579174 0.887797445 0.843695543 0.913058097 0.847016859 0.799259174 0.864050729 0.923993976 0.827570068 0.870869186 0.915843341 152996725 ara Marinomonas sp. MWYL1 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Marinomonas; 0.79679718 0.796615914 0.808792424 0.847348347 0.803065365 0.833584969 0.804835478 0.788973087 0.879474136 0.831076932 0.800174329 0.847289962 0.867027399 0.826245903 0.82408586 0.849879516 77820032 nirs uncultured organism Nitrogen Denitrification NA 1.085539699 1.06917203 1.024881155 1.06697145 1.037127255 1.059999304 1.040830974 1.043255913 1.030711297 1.047818657 1.020416545 1.042699901 0.999950221 1.016746398 0.981241377 1.016451161 1.057854132 1.065049822 126706959 alkb Sagittula stellata E-37 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 1.126925612 1.043384198 1.10373471 1.106350032 1.084122914 1.099901957 1.121689252 1.122117878 1.106226202 1.053815033 1.041635235 1.060491482 1.043792922 1.018071877 0.974783266 1.035512656 1.113789159 1.074112006 383790215 amyA Spirochaeta africana DSM 8902 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Spirochaeta;species:Spirochaeta africana; 0.901907586 0.9133398 0.860790591 0.922658875 0.826670608 0.900814863 0.830594222 0.862761244 0.852069566 0.85860037 0.863206622 0.874045058 0.806521649 0.850852574 0.852668749 0.911016157 0.87862004 332708469 ccmL Lyngbya majuscula 3L Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Moorea;species:Moorea producens; 1.30352384 1.289669378 1.284446702 1.288613057 1.265947141 1.310631404 1.279598073 1.275160151 1.272199413 1.294179202 1.272707426 1.297849544 1.245656551 1.263646728 1.231629746 1.272944393 1.287312077 1.28294018 62003585 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.777772362 0.829395838 0.854830177 0.752481445 89474382 catechol_b uncultured bacterium Organic Remediation Aromatics Other aromatics superkingdom:Bacteria; 1.093430306 1.096596407 1.072261854 1.082289958 1.040766645 1.139771278 1.038450428 1.088284089 1.093143067 1.087950134 1.05825059 1.052776073 1.013108477 1.069302018 0.979880045 1.061837031 1.091484539 1.113926978 330467676 chitinase Verrucosispora maris AB-18-032 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Verrucosispora;species:Verrucosispora maris; 0.98554756 0.933726265 0.93393792 1.020237752 0.961807251 1.012471785 0.985725418 0.947559426 0.966447382 0.992191389 0.935026154 0.953011117 0.98945656 0.958305251 0.951347762 0.889218409 0.941245326 162707998 catechol Streptomyces verticillus Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 1.178163117 1.177864383 1.117928375 1.166366154 1.139261102 1.159241915 1.132588296 1.145757762 1.143333615 1.120515337 1.127714042 1.149562301 1.127144496 1.117468897 1.112314993 1.146604975 1.160271331 1.147844797 269306549 nfsa_2 Xylanimonas cellulosilytica DSM 15894 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Promicromonosporaceae;genus:Xylanimonas;species:Xylanimonas cellulosilytica; 0.863993626 0.856087605 0.822444486 0.786978598 0.8263873 0.828175739 0.864626847 0.822404701 0.809872057 0.844464569 0.867958078 343428886 nagg Sporisorium reilianum SRZ2 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Ustilaginomycetes;order:Ustilaginales;family:Ustilaginaceae;genus:Sporisorium;species:Sporisorium reilianum; 1.099044423 1.131768316 1.090586 1.106433893 1.129892818 1.170344125 1.098103577 1.089101582 1.109935954 1.114752855 1.099894522 1.113206651 1.085791626 1.065122868 1.093060644 1.116174265 1.124601765 1.124557088 339325908 quinoline Cupriavidus necator N-1 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 1.131035316 1.111384791 1.011369243 1.011128525 1.073889756 1.102557887 1.065112899 1.03379273 1.056850208 1.126813726 1.112396916 1.084735977 1.046855786 1.104593038 1.092685266 1.085540629 1.0681961 1.119635478 197720421 mannanase Streptomyces pristinaespiralis ATCC 25486 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces pristinaespiralis; 0.927937768 0.949279882 0.964601767 0.959815303 0.902184312 0.929151615 0.93852501 0.940319063 0.925824579 0.926773178 0.879098086 0.912001477 0.895471356 0.881930237 0.868563054 0.943585364 0.95490804 182434029 urec Streptomyces griseus subsp. griseus NBRC 13350 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseus; 0.91666319 0.933237037 0.867995209 0.952961037 0.851522402 0.93194903 0.870410288 0.894610625 0.823610897 0.912981638 0.886133555 0.890320033 0.852513697 0.91705823 0.858622361 0.892148591 0.916864584 0.925142503 349583547 phenol_oxidase uncultured bacterium Carbon Cycling Carbon degradation Lignin superkingdom:Bacteria; 1.228809171 1.219394554 1.218485311 1.206019704 1.215772338 1.261984317 1.20629781 1.211696729 1.2155253 1.216946438 1.218525726 1.208931302 1.188480534 1.216917092 1.225393037 1.220085577 1.22467377 1.233982929 339285993 xyla Sulfobacillus acidophilus TPY Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XVII. Incertae Sedis;genus:Sulfobacillus;species:Sulfobacillus acidophilus; 0.996884136 0.961443592 1.017326316 1.029615113 0.912190014 0.963568817 0.92492578 0.943159638 0.993925061 0.967071962 0.999508966 0.976062496 0.948348484 0.928380897 0.909613819 0.948876328 1.005751195 0.978331528 167646375 xylanase Caulobacter sp. K31 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 0.887743746 0.83168595 0.877287948 0.887158237 0.865264296 0.857380548 0.88959128 0.879244198 0.845847539 0.869876206 0.853323842 0.875464904 0.834481951 0.806368659 0.87138077 0.844778512 283812128 amyA Kribbella flavida DSM 17836 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Kribbella;species:Kribbella flavida; 1.075455626 1.137303525 1.050716954 1.053202883 1.006533492 1.07221672 0.919196445 0.967908807 0.985220883 0.981912964 1.042335569 0.990045786 1.006219503 1.011337177 1.003630335 1.02105554 1.009959212 0.983179377 297377221 gdh Waddlia chondrophila WSU 86-1044 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Chlamydiae;class:Chlamydiia;order:Chlamydiales;family:Waddliaceae;genus:Waddlia;species:Waddlia chondrophila; 0.814155991 0.80311916 148239017 CsoSCA Synechococcus sp. WH 7803 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 1.030897852 1.095493773 1.051540439 1.089270158 1.07177247 1.11684483 1.060780329 0.876727461 1.063538614 1.084843049 1.074259007 1.116285321 1.09105748 1.045950941 1.052675619 1.084495399 1.079485359 1.07453894 192897532 ppk uncultured bacterium Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria; 0.866171947 0.891693657 0.881622335 0.845871792 0.863896435 0.843410697 0.827691658 0.875188582 0.866286167 0.8613504 0.807178816 0.848865584 0.79483491 0.786711827 0.887188472 0.831269839 0.888933772 119715884 bphF1 Nocardioides sp. JS614 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 1.063112477 1.045814131 1.032258193 1.092965698 1.039269264 1.09982518 0.994140408 1.079476084 1.067804041 1.046114004 1.075560233 1.082328032 1.01641384 1.05842956 1.027360905 1.044283498 1.087274859 1.041271684 226365269 xylj Rhodococcus opacus B4 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus opacus; 1.031846706 1.034828931 1.039929206 1.035461669 1.037429444 1.043139175 1.029816812 1.051175274 1.018435419 1.033237844 1.021170908 1.02736497 0.994839098 0.997396395 0.984378644 0.987014857 1.035767589 1.048649782 343926310 cutinase Gordonia alkanivorans NBRC 16433 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia alkanivorans; 1.008191623 1.024781598 0.993588524 1.023532701 0.97955523 1.008427644 0.952581964 1.03688321 1.015306844 0.979128228 0.999934156 1.018296973 0.912373188 0.942474012 0.89171532 0.961698259 1.001805621 1.024757658 145296459 badh Corynebacterium glutamicum R Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium glutamicum; 1.222990932 1.201661954 1.193288304 1.227092964 1.220919663 1.222900428 1.184522612 1.214550942 1.187484751 1.178663287 1.192235125 1.205728057 1.177797342 1.177961559 1.172651744 1.19961056 1.204246299 1.196229796 389663363 dehh109 Nitratireductor aquibiodomus RA22 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Nitratireductor;species:Nitratireductor aquibiodomus; 1.096284602 1.05626513 1.050065345 1.102906872 1.056761421 1.078039563 1.054531574 1.089421418 1.057032572 1.035259738 1.078252164 1.075101615 1.062916515 1.025116698 1.054693236 1.064239352 1.090420261 1.050879058 291295582 ppx Meiothermus ruber DSM 1279 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Meiothermus;species:Meiothermus ruber; 0.875965171 0.842801952 0.933174773 0.868162891 0.869426222 0.825682722 0.869799287 0.869214951 0.857861473 0.871574825 0.853517505 0.82434491 0.827729611 0.861024159 0.870550213 350550062 ara Thermobacillus composti KWC4 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Thermobacillus;species:Thermobacillus composti; 1.134543755 1.097805593 1.103864834 1.101805115 1.088981086 1.09900953 1.084912363 1.070991885 1.08745127 1.087034868 1.105887892 1.094064503 1.082077625 1.067340287 1.05435542 1.094686627 1.124564493 1.083809253 224579028 rubisco uncultured bacterium Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria; 0.868739835 0.931001497 0.814019186 0.88963178 0.856946773 0.880331122 0.895673202 0.986239851 0.946165346 0.855217748 0.791202173 0.887303775 0.842779099 0.872371039 0.863248193 0.855690093 0.847296448 299791639 linb Amycolatopsis mediterranei U32 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 1.285988956 1.297880028 1.267283913 1.265119912 1.275494193 1.31272627 1.255709217 1.258271738 1.252562686 1.268783407 1.260586281 1.263016034 1.260635187 1.266019435 1.235762022 1.250358097 1.303782059 1.281647237 35214218 cda Gloeobacter violaceus PCC 7421 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Cyanobacteria;class:Gloeobacteria;order:Gloeobacterales;genus:Gloeobacter;species:Gloeobacter violaceus; 0.873223733 0.810051432 0.841136205 0.791623095 0.829869564 0.817125504 0.835950133 226304230 bphF1 Rhodococcus erythropolis PR4 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 1.173319662 1.139582195 1.141567888 1.107470969 1.125844748 1.191697012 1.123414508 1.078689966 1.125709266 1.144272093 1.12482522 1.108057159 1.106173311 1.118764919 1.143429357 1.085249768 1.136783983 1.134940851 54014658 cutinase Nocardia farcinica IFM 10152 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 1.102270478 1.143237886 1.061331852 1.107108631 1.078781622 1.126298466 1.060643402 1.076272821 1.082510925 1.09922251 1.053224741 1.081962539 1.065822408 1.081105677 1.047932764 1.06850501 1.126262985 1.095129055 257055210 amyA Saccharomonospora viridis DSM 43017 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora viridis; 1.040778878 1.033982848 1.058861273 1.027441478 0.987724778 1.046396568 0.933583878 0.982556902 1.06085248 1.040805438 1.034239605 1.021677449 0.987202692 1.04229553 0.998338635 1.011806524 1.049899401 1.041792442 88710156 xyla Flavobacteriales bacterium HTCC2170 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Maribacter; 0.777392907 0.81536929 0.842603581 0.795308352 13446753 pcpA Pseudomonas putida Organic Remediation superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 1.004911379 0.979650637 0.977919782 1.032553351 0.967438857 0.971708062 0.971716246 0.977301182 0.974450501 0.961898949 0.961672646 0.977235936 0.952688212 0.919728427 0.913260239 0.947314223 0.974302865 0.989004935 315250976 amyA Prevotella buccae ATCC 33574 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella buccae; 0.790462635 0.810698649 0.813292622 0.824966544 0.80091956 0.781656077 0.844754574 0.854846012 70997033 alpha_galactosidase_fungi Aspergillus fumigatus Af293 Carbon Cycling Carbon degradation Other superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus fumigatus; 0.872180924 0.960238505 0.87283575 0.867117464 0.895275049 0.837880071 0.827326642 0.878423734 0.855127612 0.825664494 0.852453755 0.834780303 0.889339177 0.880275202 0.926616636 327331446 hyaluronidase Propionibacterium acnes HL096PA2 Carbon Cycling Carbon degradation hyaluronic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium;species:Propionibacterium acnes; 1.181521203 1.189402004 1.182816526 1.179468706 1.182362094 1.196920782 1.155104034 1.155876805 1.142111149 1.16035677 1.175020876 1.174661681 1.152984534 1.156334544 1.153930536 1.158208871 1.202203663 1.172023001 119391495 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.197053426 1.203586355 1.152820027 1.190221256 1.132746806 1.208371063 1.151909521 1.191591531 1.185893576 1.223510451 1.137202359 1.167862191 1.161489671 1.203412923 1.138498873 1.170893668 1.220515564 1.226833146 392722232 catechol Novosphingobium sp. Rr 2-17 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 1.133293631 1.140321794 1.110125196 1.13926388 1.121740028 1.151345231 1.092930652 1.125907284 1.124461471 1.131100673 1.102518692 1.130805581 1.100263587 1.140203028 1.106218421 1.104517506 1.138064465 1.143633207 150036068 soxY Thiocapsa pendens Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiocapsa; 1.144603545 1.112468709 1.125979001 1.153654214 1.11909271 1.090908012 1.101306532 1.113827826 1.124110869 1.111588071 1.163663466 1.162860036 1.107505824 1.072164232 1.089776562 1.111433845 1.136656521 1.050738619 165988110 rubisco uncultured bacterium Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria; 0.773177422 0.840374181 0.822035219 0.841864131 0.854518474 0.820300668 0.842064386 0.872911957 0.791102744 374663328 poba Saccharomonospora cyanea NA-134 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora cyanea; 1.059539612 1.075813447 1.014384522 0.989694453 1.003866235 1.00998691 0.953398798 0.96056335 0.986276666 1.006683214 1.021021766 1.007405456 0.987331205 0.969623193 0.945119418 0.991290071 1.001876073 1.007606499 167584857 chitinase Burkholderia ubonensis Bu Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ubonensis; 0.823519695 0.807449281 0.781851509 0.830865599 89360675 phn Xanthobacter autotrophicus Py2 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 1.048138468 1.012581809 0.982260192 1.002840182 1.037587612 1.013348994 1.032254154 1.033283368 1.015409196 1.022510504 1.02158322 1.018356221 1.031542596 0.958376585 1.005691976 0.944117992 1.01599262 1.011055776 212702319 fthfs Desulfovibrio piger ATCC 29098 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio piger; 0.827823833 0.869743855 0.882185666 0.927017415 0.802071131 0.82693621 0.857668352 0.941951976 0.917940057 0.859507809 0.834985248 0.892890752 0.796527175 0.828114898 0.848038465 0.871397512 0.908749753 358752076 alginase Granulicella mallensis MP5ACTX8 Carbon Cycling Carbon degradation Alginate superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Granulicella;species:Granulicella mallensis; 0.786541653 0.799386096 291372762 dehh109 Haloferax volcanii DS2 Organic Remediation Chlorinated solvents NA superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloferax;species:Haloferax volcanii; 0.814849533 0.869208139 0.812212504 0.847415962 0.825019818 0.874369725 0.858765817 0.852675254 0.84915874 0.844219471 0.866343729 0.806890064 0.854660554 0.865647232 0.864235002 0.851826218 336117000 amyA Microlunatus phosphovorus NM-1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Microlunatus;species:Microlunatus phosphovorus; 1.164188523 1.159435898 1.152143999 1.156065353 1.154536433 1.187372329 1.101140359 1.07067981 1.142548229 1.105387332 1.057778811 1.102284116 1.049242692 1.08898681 1.014977559 1.086365658 1.161221543 1.169156963 288348815 tfda Frankia sp. EUN1f Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 0.867875165 0.852698447 0.85921951 0.868161881 0.848968694 0.859180595 0.813491618 0.880175492 0.883370452 339282953 mnp Polyporus brumalis Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Polyporaceae;genus:Polyporus; 1.022587244 0.978677189 0.996568045 1.053557273 0.961462637 0.978728944 0.982641157 1.024081874 1.009916209 0.991684077 0.949760274 1.031002558 0.942131727 0.94142712 0.9671065 0.978163483 1.018607638 1.008405678 78049004 cysI Xanthomonas campestris pv. vesicatoria str. 85-10 Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas euvesicatoria; 0.914409004 0.900161364 0.882823718 0.853982654 0.921749695 0.942308028 0.911198568 0.910112141 0.853930133 0.82802704 0.851490942 0.83668261 0.86033452 0.894520922 0.89571499 2414562 ppk Mycobacterium leprae Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 0.847009194 0.86756671 0.809736562 0.900723938 0.758351652 0.827145201 0.830446203 0.823414008 297623690 mer Truepera radiovictrix DSM 17093 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Trueperaceae;genus:Truepera;species:Truepera radiovictrix; 0.895948389 0.990508269 0.959184437 0.948286122 0.974318336 0.981481732 0.876441902 0.878255699 0.955485278 0.842396854 0.807924793 0.900911565 0.892793013 0.894088757 0.847745665 0.919349316 0.984590081 0.962568201 357939130 vana Burkholderia sp. YI23 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 1.423454548 1.370902591 1.354353255 1.392145013 1.364691859 1.388565366 1.361330019 1.383762847 1.378591293 1.366101267 1.363357405 1.377125082 1.348441254 1.332145609 1.329349137 1.356111793 1.407531161 1.344960122 187918734 B_lactamase_A Burkholderia phytofirmans PsJN Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 1.234329395 1.206142854 1.254681361 1.243869106 1.241660372 1.23781062 1.252997639 1.262813866 1.226840508 1.230723073 1.218779006 1.223986443 1.199590087 1.176610797 1.15825041 1.183545042 1.223967336 1.221495976 302546963 catechol_b Streptomyces hygroscopicus ATCC 53653 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces himastatinicus; 0.864521907 0.860121 0.849275279 0.816004873 0.861587608 0.841477774 0.789809966 0.881433302 0.872582885 222440834 fthfs Labrenzia alexandrii DFL-11 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia alexandrii; 1.069754111 1.030960549 1.08063997 1.067657568 1.086045308 1.070062856 1.058733255 1.047628981 1.101284694 1.055589451 1.061376546 1.057742007 1.023565658 0.98081303 1.006254832 1.030950033 1.050005834 1.065437736 40746774 phenol_oxidase Aspergillus nidulans FGSC A4 Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 0.933105896 0.916514721 0.921230388 0.963596021 0.862988917 0.919624206 0.884963395 0.932700292 0.993767791 0.885320709 0.878885868 0.927643844 0.86683593 0.880939497 0.872523619 0.886046887 0.977594608 0.998177244 319796517 terc Variovorax paradoxus EPS Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 1.106665517 1.098696125 1.109509366 1.073752561 1.080260306 1.068086255 1.066614634 1.069156953 1.050334276 1.060483532 1.070969392 1.087639919 1.035218781 1.006515081 0.998018831 1.043406291 1.140350172 1.056750505 323701254 APS_AprB Desulfotomaculum nigrificans DSM 574 Sulfur adenylylsulfate reductase NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum nigrificans; 0.806374423 0.819418809 0.807269126 0.849066217 0.843430307 0.786957467 0.826444044 0.802038121 0.809637771 0.816707135 0.768317356 0.832551823 389574105 xyla Bacillus aerophilus KACC 16563 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 0.898020866 0.887148778 0.952816467 0.944091617 0.917639746 0.888882823 0.890906441 0.939915129 0.92151275 0.944991989 0.879223889 0.950384236 0.902677887 0.906520925 0.890187035 0.903523066 0.911950209 0.909913121 73762956 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.864701589 0.897538378 0.84256629 0.825425693 0.912893272 0.903175092 0.87608188 0.833191369 0.826362364 0.87604233 0.910623477 0.879281214 0.871015999 0.891336623 0.904966129 0.88633033 0.849731814 0.925947565 299134974 TIM Afipia sp. 1NLS2 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Afipia; 1.611924379 1.557586456 1.539636758 1.559178702 1.509869355 1.577159848 1.524267654 1.552062996 1.535293598 1.519006894 1.52576984 1.532946454 1.504857639 1.486175844 1.517128018 1.528793944 1.588001756 1.527246894 209967214 norb Rhodospirillum centenum SW Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum centenum; 1.380132947 1.367455558 1.343456696 1.362190971 1.359542174 1.402651132 1.350199591 1.354360938 1.347044536 1.332926006 1.35469251 1.345440385 1.337141343 1.325892949 1.33181107 1.3523413 1.391068453 1.340319728 38638533 xylg Pseudomonas putida ND6 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 1.513100046 1.485074971 1.463072938 1.447862884 1.448647925 1.51564231 1.436805161 1.454104171 1.449372863 1.451105492 1.455847687 1.44404089 1.440160576 1.42276446 1.414488946 1.450435379 1.481254894 1.451117908 152979188 dmsa Actinobacillus succinogenes 130Z Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Actinobacillus;species:Actinobacillus succinogenes; 1.091909538 0.972512874 0.874590511 0.857465233 0.86974451 0.879517633 0.875555214 0.901649576 0.944981247 0.852607719 0.867229673 0.889439133 0.854603503 0.875763239 0.86423596 0.872456221 0.837702129 0.856089365 300109003 badh Schizophyllum commune H4-8 Organic Remediation Aromatics Other aromatics superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 0.926194696 0.930639054 0.898569303 0.906920166 0.923318176 0.963319516 0.912162087 0.903625672 0.92329322 0.913023955 0.919618694 0.907457273 0.889071783 0.95537017 0.906981318 0.906524047 0.958805602 0.951738132 296269856 amyA Thermobispora bispora DSM 43833 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Thermobispora;species:Thermobispora bispora; 0.813006826 0.789770347 0.8435191 0.996062619 0.84858592 0.783278467 0.816146733 0.859828503 0.79507847 0.824381048 0.825915072 0.922242803 0.818214318 0.821759228 0.810020273 0.795094266 0.868839031 0.854945876 170936249 axe Podospora anserina S mat+ Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Lasiosphaeriaceae;genus:Podospora;species:Podospora anserina; 1.089615193 1.047428389 0.999847272 1.107164545 1.008753765 1.029219697 1.052642598 1.021070814 1.059510861 1.011910636 1.03539513 1.040865651 1.004515998 0.98812408 1.010854958 1.033714992 1.052392313 0.996410833 220909235 Sir Cyanothece sp. PCC 7425 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 0.826781006 0.848110275 0.81639283 0.800196211 0.847140621 0.816232854 0.87326722 168705466 Sir Gemmata obscuriglobus UQM 2246 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Gemmata;species:Gemmata obscuriglobus; 1.085833086 1.076259928 1.059716063 1.085467558 1.065300725 1.065036201 1.077302195 1.05660868 1.092363212 1.093602308 1.067393898 1.094979058 1.052907455 1.013747263 0.999843104 1.05042998 1.099959529 1.100521575 312167192 FBPase Burkholderia rhizoxinica HKI 454 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia rhizoxinica; 0.904381044 0.893470771 0.972309621 0.901254345 0.930692397 0.930322068 0.961639355 0.950470663 0.94343369 0.949150019 0.945163068 0.920351554 0.828352418 0.913449892 0.895840975 0.855501501 0.896484271 0.937319013 67985209 urec Kineococcus radiotolerans SRS30216 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Kineosporiaceae;genus:Kineococcus;species:Kineococcus radiotolerans; 1.251261314 1.240510264 1.222875673 1.249553362 1.197244192 1.246524979 1.195105561 1.228115327 1.22225977 1.240322559 1.18585874 1.2107641 1.169928377 1.190972797 1.164865847 1.184991946 1.243215424 1.227446122 133919232 ben_bcla Stigmatella aurantiaca Sg a15 virulence NA NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 1.004074675 0.996516851 1.002346641 1.041609291 1.037346803 1.034934719 1.061872051 0.996212943 0.987177899 1.074969861 1.046943651 1.044818148 1.002980778 0.981172383 0.946135777 1.001331306 1.019302543 1.012306643 119671792 norb Azoarcus sp. BH72 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 0.912850726 0.93084128 0.931400204 0.934796539 0.926512908 0.95282382 0.906537487 0.876954425 0.905615418 0.931205866 0.936929078 0.887329707 0.931261747 0.890968948 0.935927673 0.951829717 0.969795665 0.934689832 347758386 tehb Micavibrio aeruginosavorus ARL-13 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;genus:Micavibrio;species:Micavibrio aeruginosavorus; 1.105999435 1.095350351 1.096511113 1.091514594 1.093969689 1.126933515 1.090489392 1.091590567 1.071658366 1.099765281 1.082323711 1.09624785 1.068605496 1.075810912 1.028503114 1.109212363 1.11157549 1.096757249 116665933 nifh Methanosaeta thermophila PT Nitrogen Nitrogen fixation NA superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosaetaceae;genus:Methanosaeta;species:Methanosaeta thermophila; 0.816689852 0.785531976 0.857886876 0.805050064 0.789827315 0.828786569 0.780515801 0.785835388 300545579 amyA Pimelobacter sp. Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Pimelobacter; 0.780323258 0.836334034 0.872687661 0.820579752 0.831504797 0.916951756 0.788746813 0.81622336 0.830550802 75992419 phtb Terrabacter sp. DBF63 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Terrabacter; 1.326849794 1.300862417 1.284682548 1.307109445 1.285020819 1.307602205 1.280117102 1.30275613 1.277177991 1.294028007 1.299325166 1.306472172 1.267165292 1.270701863 1.272947014 1.285944983 1.291174178 1.272294318 387221623 amyA Leptospirillum sp. Group II 'C75' Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Nitrospirae;class:Nitrospira;order:Nitrospirales;family:Nitrospiraceae;genus:Leptospirillum; 0.765649166 0.78118489 0.787151785 0.806265837 0.804927051 0.811311158 260223144 TIM Curvibacter putative symbiont of Hydra magnipapillata Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Curvibacter; 0.868954351 0.929675188 0.851933159 0.922554707 0.839605636 0.848084303 0.828379203 0.8128281 0.8747728 0.865264935 0.834077893 0.853885976 0.797999603 0.870568037 0.828000195 0.850317684 0.87800049 353189299 pectinase (pectate_lyase) Mycobacterium rhodesiae JS60 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 1.111709546 1.120198921 1.1124616 1.126659347 1.14336412 1.133534932 1.115305254 1.126556329 1.110031841 1.111434251 1.109849881 1.125316852 1.117289212 1.096785008 1.123880505 1.10983076 1.146630324 1.110685746 226316856 cellobiase Deinococcus deserti VCD115 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus deserti; 0.783772091 0.813307491 0.793937318 0.801396781 0.801082207 0.846980963 334703036 pula Aeromonas caviae Ae398 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas caviae; 0.955695921 0.939934851 0.889858361 0.937048209 0.934873276 0.955145691 0.889103779 0.932976014 0.905011656 0.879767731 0.920641569 0.920302138 0.900211472 0.878554956 0.870218744 0.91675266 0.933526366 0.931746176 183580532 amyA Kocuria rhizophila DC2201 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Kocuria;species:Kocuria rhizophila; 1.164092377 1.134357165 1.130373423 1.184438594 1.135235919 1.182577444 1.158061721 1.151927103 1.13887936 1.152203314 1.142423068 1.177249758 1.147359089 1.150720645 1.130037437 1.158177162 1.164933788 1.138999307 4106534 mnp Trametes versicolor Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Trametes; 0.905663987 0.924135101 0.912842502 0.890850555 0.826160161 0.895979283 0.797968379 0.893515689 0.886795439 0.885489977 0.849538672 0.868788499 0.789769975 0.863287101 0.865460337 0.91920297 0.922770553 365417759 ben_bcla Bradyrhizobium sp. STM 3843 virulence NA NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.919615302 0.879779086 0.870215897 0.916979722 0.868817639 0.882371993 0.877808952 0.946470951 0.869623377 0.83152463 0.869439711 0.834212357 0.84018034 0.816358485 0.997662429 0.904569328 0.880401595 311069363 ara Bacillus atrophaeus 1942 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus atrophaeus; 1.191510576 1.093187681 1.091530961 1.088016689 1.061208184 1.071742781 1.086048258 1.091575998 1.070140113 1.071442913 1.080346287 1.065951476 1.059617052 1.037838382 0.978426002 1.026724616 1.071861961 1.134425745 383778953 ppx Actinoplanes missouriensis 431 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes;species:Actinoplanes missouriensis; 1.054141625 1.039537171 0.987179024 1.016193972 1.013882018 1.036091445 1.021989809 0.993661208 1.007742707 1.005139126 1.005205962 1.033848304 1.013421955 0.990660524 0.970146389 0.971826574 1.001028814 1.022494998 126708478 urec Sagittula stellata E-37 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 1.032233571 1.000099663 0.951996433 1.030118806 0.944323061 0.96485644 0.986114094 0.996791026 0.979770253 0.985186393 0.923067443 0.993284189 0.915161702 0.938023996 0.881356143 0.927669106 0.985787583 0.992168162 219965775 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.420832623 1.386903642 1.348905004 1.390817884 1.374465372 1.394145492 1.360286434 1.385054025 1.391814757 1.371658073 1.384274793 1.413372111 1.338342433 1.340701815 1.335075087 1.357767198 1.363911821 1.34330659 119465784 CsoS1_CcmK Nodularia spumigena CCY9414 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nodularia;species:Nodularia spumigena; 0.878012004 0.846598847 0.851456467 0.865418879 0.815466768 0.8358811 0.856580142 0.860372185 0.822555808 0.813417518 0.810605595 0.967989928 iegAssA14 assa Organic Remediation Other Hydrocarbons NA NA 0.791775673 0.796684116 0.844751097 0.830930795 0.821766033 345876475 nirb endosymbiont of Riftia pachyptila (vent Ph05) Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;species:endosymbiont of Riftia pachyptila; 0.875923696 0.859015508 0.82017321 0.858228175 0.856346863 0.888787639 0.827138019 0.837010814 0.820611507 0.818231194 0.816572743 0.806352677 0.80050171 0.874471725 0.847786527 283812665 xylg Kribbella flavida DSM 17836 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Kribbella;species:Kribbella flavida; 1.037909011 1.017296788 1.016150895 0.999753746 0.952526863 0.99089381 0.960621067 0.988942567 1.011122442 1.005190304 0.992389548 0.997392858 0.944368942 0.99456107 0.954322944 0.972882279 1.005068336 1.047579164 363805725 one_ring_23diox uncultured bacterium Organic Remediation Aromatics Other aromatics superkingdom:Bacteria; 0.968423152 0.905480303 0.847302918 0.885400217 0.857345628 0.877777639 0.853922982 0.897621518 0.938964206 0.926480082 0.893221945 0.865234453 0.851153376 0.791712689 0.81426409 0.865528846 0.881016556 77176863 rd Dehalococcoides sp. KB1 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 0.790731052 0.802112339 219861219 amyA Arthrobacter chlorophenolicus A6 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 0.958751676 1.005162449 0.956453433 0.998924488 0.989301566 0.985188634 0.967641548 0.963070156 0.996202537 0.983232478 0.939261886 0.981580902 0.97158079 0.939575037 0.923250279 0.975495713 0.990704713 0.974935146 254442405 mannanase Verrucomicrobiae bacterium DG1235 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales; 0.991366006 0.965791106 0.893423326 0.960522601 0.828314149 0.999863478 0.85663213 0.931589401 0.944246216 0.964580629 0.896778331 0.88826493 0.827980154 0.899143649 0.941244488 0.962059358 0.98161524 187477438 ppx Bordetella avium 197N Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella avium; 0.845639575 0.873816611 0.881220592 0.86240166 0.839581639 0.855240337 0.832960785 0.861701752 225194050 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.990712025 0.817605753 0.928299058 0.968528325 0.828948555 0.866291152 0.829425112 0.968478463 0.986485714 0.824587992 0.878975656 0.812980411 0.851089201 0.845154473 0.900059623 0.837560829 306529881 cysI Dickeya dadantii 3937 Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya dadantii; 1.309036246 1.290213917 1.292222611 1.282909206 1.268638541 1.311039399 1.273660455 1.26476371 1.269044364 1.28424288 1.267859699 1.287557204 1.248660827 1.247713113 1.216661092 1.271850388 1.284509112 1.279018139 116624723 xylanase Solibacter usitatus Ellin6076 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 1.014759716 1.025883661 0.997056367 1.016821087 1.001945901 1.037809563 1.029150315 1.003868843 0.996631182 1.020802892 0.980193344 1.017524612 0.975373727 0.995304316 0.919703405 0.987091661 0.993237859 1.016189983 291439993 chitinase Streptomyces ghanaensis ATCC 14672 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces ghanaensis; 0.856232896 0.883810667 0.86420307 0.877579596 0.866683549 0.904008982 0.818123309 0.89446299 0.847027997 0.861572543 0.894210174 0.895697987 116694916 mhpa Ralstonia eutropha H16 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 1.155846886 1.148551858 1.14011491 1.134687845 1.120082141 1.136428927 1.108614156 1.088088864 1.118909632 1.152760238 1.134132897 1.124641685 1.097988571 1.072902631 1.078367289 1.096431168 1.163299174 1.142525037 39649964 ppx Rhodopseudomonas palustris CGA009 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 1.014323302 0.994907021 0.99041669 1.036083802 0.987805409 1.048457361 0.998838361 1.025349547 1.014185784 0.99413079 0.966239432 0.98154949 0.978504072 1.001606827 0.981898786 0.978346338 1.020818901 1.04537639 285018527 nbac Xanthomonas albilineans GPE PC73 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas albilineans; 1.002337472 0.958795044 0.941942989 1.039686404 0.945556602 0.982023944 0.984200494 1.011585752 0.989319796 0.975021845 0.982343286 1.010962555 0.886505236 0.91462196 0.876370344 0.912031668 1.019492316 0.981713057 144898973 amyA Magnetospirillum gryphiswaldense MSR-1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum gryphiswaldense; 1.21566537 1.098485304 1.121021786 1.154587138 1.162176456 1.146753141 1.14503527 1.185140149 1.190592458 1.109306175 1.09920675 1.112265379 1.143281586 1.037382362 1.113414698 1.127255896 1.136011754 1.149091815 133778538 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 1.03385535 1.115010323 1.029603184 1.04951958 1.117942619 1.049300245 1.034680952 1.002171109 1.094996707 1.0399462 1.086560814 1.067534361 1.065349502 1.036372531 1.075925661 1.090521841 198253442 ppx Octadecabacter antarcticus 307 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 1.038570226 1.016776028 0.982306254 1.016829471 0.959746992 1.000601985 0.95420035 0.987986567 0.999988101 0.983073291 0.964413166 0.986413872 0.957441058 0.966297426 0.921890976 0.949068332 1.023251191 1.006140725 334103294 pme Sphingobium chlorophenolicum L-1 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium;species:Sphingobium chlorophenolicum; 0.856591066 0.918961081 0.857498152 0.909846581 0.862600707 0.917181927 0.824991293 0.889012563 0.870797971 0.868561998 0.857179924 0.892060778 0.857939731 0.863971753 0.860156378 0.829906105 0.914507078 0.936056276 83308707 pmoa Methylocapsa acidiphila Carbon Cycling Methane Methane oxidation superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Methylocapsa; 1.19977107 1.179721014 1.14165574 1.218359195 1.162127147 1.183023042 1.186362805 1.171324224 1.197148622 1.176651676 1.123772102 1.168249488 1.1462821 1.14194574 1.198112888 1.118796357 1.17972607 1.179556523 398211402 phn Pantoea sp. YR343 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 0.992758678 0.961618366 0.970411639 1.018381903 0.952262613 0.963493878 0.907906516 1.000124444 1.001404272 0.934874275 0.877569631 0.953769374 0.941514235 0.923111827 0.880441251 0.892514171 0.996425533 0.984460859 229828712 pula Shuttleworthia satelles DSM 14600 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Shuttleworthia;species:Shuttleworthia satelles; 0.874828388 0.874880394 0.817113776 0.831271234 0.85255138 0.874203685 0.798807315 0.852830988 0.91661479 0.849971637 0.862458992 0.851295914 251755993 RgaE Pectobacterium carotovorum subsp. carotovorum PC1 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium carotovorum; 0.83845058 0.82006832 0.784717646 0.814438582 0.804595121 0.800835434 0.796935053 0.807818649 0.843639086 16611903 rubisco Nitrosospira sp. 40KI Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosospira; 0.790414241 0.829995089 0.832898327 0.829909808 0.886308824 0.81700251 0.803073358 0.833834624 0.796569776 0.814282022 337749811 cda Paenibacillus mucilaginosus KNP414 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 1.481582327 1.441790596 1.448983791 1.438504993 1.449058077 1.480396388 1.421167184 1.459746962 1.435509972 1.45573448 1.425219012 1.447575246 1.411765689 1.448589907 1.445423451 1.438226454 1.425162045 1.453466465 379988641 dsrB uncultured bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.845574594 0.907234759 0.845864747 0.779897925 0.838433648 0.858825523 0.846321845 0.824878811 0.824512031 126729027 tktA Sagittula stellata E-37 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 1.337085364 1.341530553 1.269455231 1.289800383 1.273508586 1.322405165 1.247390206 1.269433087 1.262324034 1.270083718 1.265057006 1.257180497 1.254800499 1.25450796 1.241501245 1.256572034 1.309062265 1.31480427 332372381 rubisco uncultured bacterium Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria; 0.862430933 0.822994842 0.850045865 0.920745351 0.890788885 0.849627217 0.889634029 0.847485261 0.922645395 0.884749428 0.915156647 0.904501939 0.871043439 0.8332687 0.823343829 0.79617165 0.920006576 0.888670931 227069581 nira uncultured archaeon Nitrogen Assimilatory N reduction NA superkingdom:Archaea; 1.031168378 1.108016189 0.981361678 0.978264782 0.917795915 0.9456974 0.964604189 0.913951569 0.950447147 0.979888366 0.941128911 0.945759999 0.894622792 0.904648726 0.916184436 0.859732818 0.978145507 1.021518922 289707445 hzo uncultured anaerobic ammonium-oxidizing bacterium Nitrogen Anammox NA superkingdom:Bacteria; 0.793743864 0.786226175 0.806479659 226355771 amyA Deinococcus deserti VCD115 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus deserti; 0.913935537 0.851097393 0.862530194 0.862412661 0.85087433 0.845825243 0.866808889 0.885255557 0.885868276 0.877668534 0.83490736 0.884912012 0.865044372 0.824941061 0.871552711 0.871356819 0.876560055 0.909237196 154161541 FBPase Xanthobacter autotrophicus Py2 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 1.142505222 1.125449907 1.166752436 1.172405707 1.146563491 1.207630442 1.152494346 1.169853759 1.171521202 1.134715733 1.160761236 1.1694065 1.114479892 1.122286439 1.122212578 1.16838586 1.146763412 1.134043034 88790369 tktA Nitrococcus mobilis Nb-231 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Nitrococcus;species:Nitrococcus mobilis; 1.064641488 1.079855009 1.05743327 1.073900964 1.120946175 1.042680787 1.095988943 1.049182129 1.039184955 1.036505462 1.025037812 1.028074113 0.996161505 1.003223286 0.974108271 0.97127884 1.055301041 1.058028919 319756008 gdh Deinococcus maricopensis DSM 21211 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus maricopensis; 1.071744546 1.08709477 1.058666138 1.065660856 0.992403769 1.066565914 1.018916661 1.035592394 1.06704966 1.031116782 0.993630522 1.030516928 1.026277761 1.000816624 0.977597394 1.032996126 1.069007006 1.091550569 330990561 cysJ Gluconacetobacter sp. SXCC-1 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter; 1.026555291 1.011438463 1.020130279 1.013487071 0.976820985 1.025342762 0.968513153 1.014302417 1.014576772 0.988689994 0.985670661 0.986076842 0.984097233 0.995890195 0.982290567 0.976863498 1.013724592 1.000883249 84780887 ppx Sodalis glossinidius str. 'morsitans' Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Sodalis;species:Sodalis glossinidius; 0.937504397 0.869774423 0.817491962 0.878349293 0.809847041 0.844030469 0.818518745 0.931539707 0.844696563 0.871643117 0.864629664 0.902024004 0.846290989 288925285 amyA Prevotella buccae D17 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella buccae; 0.842641668 0.845120332 0.825616108 0.864148999 0.835496462 0.873087481 0.864972077 0.865253474 0.792892045 0.875510983 0.843866385 0.855592311 0.840789103 0.843945738 0.80365526 0.815318762 0.850057124 0.888127154 237685247 urec Teredinibacter turnerae T7901 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;genus:Teredinibacter;species:Teredinibacter turnerae; 1.025598751 0.959899338 0.9733645 0.932065313 0.970790226 0.932502474 0.936830526 0.971528678 0.930840502 0.952235579 0.958590247 0.931486782 0.898125329 0.939980931 0.979072389 0.965375356 0.945993964 325674829 cdh Rhodococcus equi ATCC 33707 Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus equi; 0.964199496 0.95608811 0.920869043 0.997808231 0.940377463 0.940820589 0.899993292 0.903952082 0.98948578 0.937101443 0.906127814 0.934911931 0.848684208 0.909382929 0.860274328 0.926539404 0.978207981 0.976110307 228005439 bphF1 Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Alicyclobacillus;species:Alicyclobacillus acidocaldarius; 0.902112101 0.88961337 0.949190219 0.915908751 0.914914614 0.920437469 0.916567805 0.898003892 0.906038322 0.900369912 0.937894888 0.91370077 0.873055292 0.904923518 0.807365259 0.857351408 0.906019669 0.879052454 297550434 mannanase Ktedonobacter racemifer DSM 44963 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Chloroflexi;class:Ktedonobacteria;order:Ktedonobacterales;family:Ktedonobacteraceae;genus:Ktedonobacter;species:Ktedonobacter racemifer; 1.091735766 1.086616254 1.088703836 1.113504285 1.045340728 1.063438891 1.05682098 1.09520114 1.094462539 1.048116916 1.096296246 1.107311914 1.027541649 1.033949326 1.031272754 1.057005206 1.098415871 1.074053173 403714691 pcag Kineosphaera limosa NBRC 100340 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dermatophilaceae;genus:Kineosphaera;species:Kineosphaera limosa; 1.257803647 1.199006033 1.197519659 1.212104961 1.216641705 1.2492119 1.177120281 1.149596659 1.232272668 1.16945895 1.199377375 1.203128011 1.168259473 1.156158606 1.199477065 1.162075984 1.206598217 1.173093114 57233724 rd Dehalococcoides ethenogenes 195 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides;species:Dehalococcoides ethenogenes; 0.820372264 0.801114453 0.807032058 56695892 SoxV Ruegeria pomeroyi DSS-3 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 1.001312623 0.971128968 0.965400847 1.0244904 0.920654704 0.955975403 0.913753356 0.96778999 0.985153616 0.950214473 0.99201868 0.988358425 0.922236941 0.934093337 0.944824123 0.970213133 0.99169672 0.932867501 384190211 amyA Bifidobacterium animalis subsp. lactis BB-12 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium animalis; 1.426495433 1.430770988 1.393201257 1.387037155 1.373133009 1.42935688 1.370476856 1.386115553 1.363356759 1.370048837 1.394925385 1.380209136 1.367335229 1.368304516 1.373242289 1.388543179 1.409819986 1.384196694 94422964 B_lactamase_A Sphingomonas sp. SKA58 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 1.100798409 1.094666182 1.053232169 1.070008536 1.079253 1.054094051 1.033431662 1.073638 1.102223109 1.004371867 1.039960103 1.060331735 1.022889967 1.000551419 0.998493566 1.014523674 1.076831459 1.047158777 150031344 phn Sinorhizobium medicae WSM419 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 0.811682264 0.855479761 0.830630866 0.847905318 289207421 fccab Thioalkalivibrio sp. K90mix Sulfur Sulfide Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio; 0.880130048 0.881636889 0.83909755 0.915983606 0.847898244 0.893927475 0.836517593 0.873747716 0.902544444 0.931619861 0.877989009 0.923816682 0.813599237 0.839556905 0.83067395 0.907629403 0.878159245 171685206 protease_aspartate_fungi Podospora anserina S mat+ Carbon Cycling Carbon degradation protein superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Lasiosphaeriaceae;genus:Podospora;species:Podospora anserina; 0.981798989 0.935859963 1.065754425 1.015931081 0.893948778 0.864386352 0.864443954 0.910427018 0.935624955 0.919505437 0.869976109 0.923465308 0.875556285 0.845344892 0.83621825 0.870279543 0.95075315 0.970998845 351684109 arsm Rhodanobacter sp. 2APBS1 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Rhodanobacter; 0.824028909 0.885238395 0.872588819 0.892270962 0.881853505 1.044156559 0.861565333 0.880679812 0.90446206 0.934859685 0.850814532 0.82677554 0.90416409 0.880487052 0.949579722 0.899661438 0.923497552 0.924256521 227538208 acetylglucosaminidase Sphingobacterium spiritivorum ATCC 33300 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Sphingobacterium;species:Sphingobacterium spiritivorum; 0.758965606 0.786947577 0.85987586 0.824763414 311741968 alkb Aeromicrobium marinum DSM 15272 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Aeromicrobium;species:Aeromicrobium marinum; 1.22004549 1.205058032 1.17167312 1.257683127 1.22091969 1.226926776 1.198777505 1.205943794 1.240779627 1.196648951 1.253290458 1.268961187 1.192027611 1.156416336 1.202250384 1.215319975 1.224317026 1.156275801 121604803 poba Polaromonas naphthalenivorans CJ2 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 0.844101938 0.844311544 0.858456107 0.889466678 0.869215685 0.836998994 0.903447863 0.838303453 0.868719217 0.819450694 0.831183679 0.869374463 0.922549887 329848607 pme Asticcacaulis biprosthecum C19 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis biprosthecium; 1.139376443 1.088798686 1.09665176 1.136955463 1.115602488 1.054397247 1.100585157 1.096888881 1.142277933 1.084165078 1.093023435 1.096428069 1.045867933 1.025005021 1.04792726 1.073302452 1.096607719 1.091784177 383108030 xyla Spirochaeta africana DSM 8902 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Spirochaeta;species:Spirochaeta africana; 0.800449399 0.781725687 0.804214428 0.82021419 0.801450885 0.834563201 0.859408537 269989497 IcfA Legionella longbeachae D-4968 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Legionellales;family:Legionellaceae;genus:Legionella;species:Legionella longbeachae; 0.853446128 0.843189327 0.934439511 0.819581702 0.791482997 0.82380088 0.87665374 0.876816153 0.806054939 0.897183698 0.83794206 0.835778718 0.862098536 0.9011053 347013702 phenol_oxidase Myceliophthora thermophila ATCC 42464 Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Myceliophthora;species:Myceliophthora thermophila; 0.968452137 0.883879178 0.851375482 0.907403833 0.970662097 0.860870625 0.853246084 0.842109618 0.890071754 0.843017364 0.864200774 0.827239005 0.849441959 0.830407835 0.813849303 0.8504979 0.807135755 315178645 CsoS1_CcmK Vibrio furnissii NCTC 11218 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio furnissii; 0.825288191 0.876193083 0.816928004 0.860192901 0.838033325 0.885446915 0.912655978 0.811965877 0.827085201 0.851947143 0.894156768 0.878084208 142509 cda Bacillus sp. Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 0.779475236 0.843079769 0.855061405 0.839196664 0.819098217 0.812765795 0.844709277 302489388 arsc Desulfovibrio fructosovorans JJ Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio fructosovorans; 0.777933571 0.838480171 94501639 linb Oceanobacter sp. RED65 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Bermanella; 0.872548462 0.797195381 0.823355809 0.85383928 0.812269362 0.894652008 0.801782177 0.817695033 0.853713857 0.843129718 0.803811016 227965842 urec Tsukamurella paurometabola DSM 20162 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Tsukamurellaceae;genus:Tsukamurella;species:Tsukamurella paurometabola; 1.236728154 1.186723894 1.197986471 1.207131782 1.145713242 1.177559137 1.151310269 1.179780471 1.19043834 1.180391326 1.178936484 1.176101376 1.160200818 1.153842021 1.123801017 1.158489597 1.215576991 1.182414386 373894241 terc Mucilaginibacter paludis DSM 18603 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Mucilaginibacter;species:Mucilaginibacter paludis; 0.966611565 0.998951027 0.958997582 0.983120788 0.967803135 0.975326667 0.955068131 0.984208265 0.958839197 0.973945948 0.970479237 0.95819125 0.948771558 0.948366523 0.928615659 0.934066003 0.97640372 0.977867098 407280084 bend Rhodococcus sp. P14 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 0.968291619 0.970815947 0.932836969 1.009617655 0.987490732 0.924291929 1.001420116 0.956996534 0.98135703 0.965366561 0.955724134 0.947030964 0.917877174 0.903430306 0.889319554 0.876696531 0.961541594 0.983828142 206580643 one_ring_12diox Klebsiella pneumoniae 342 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 0.910397806 0.923412098 0.953534512 0.936090286 0.964120712 0.948568279 0.94375498 0.946186442 0.962806694 0.953281993 0.948773497 0.950476452 0.940251337 0.975657472 0.927584857 0.896202441 0.892796354 0.969536958 256690954 xylanase Halorhabdus utahensis DSM 12940 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halorhabdus;species:Halorhabdus utahensis; 0.828543377 0.88660607 0.883652236 0.822526059 0.828271465 0.83430117 0.801829651 0.795973881 0.815533406 0.827502762 0.858896096 0.867949454 1854553 nifh Methanothermobacter thermautotrophicus Nitrogen Nitrogen fixation NA superkingdom:Archaea;phylum:Euryarchaeota;class:Methanobacteria;order:Methanobacteriales;family:Methanobacteriaceae;genus:Methanothermobacter; 0.914811032 0.931720652 0.919917746 0.940964323 0.938201359 0.899754443 0.924066937 0.924424472 0.930704664 0.889853734 0.913628209 0.910693639 0.902082979 0.859931339 0.877726946 0.892416945 0.895892575 0.926400228 3928777 endochitinase Pseudoalteromonas sp. S9 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas; 0.833529069 0.811675045 0.804213365 0.821436068 0.884018747 0.843846763 0.810757609 0.87542691 0.859284725 0.835574645 0.908470764 0.835877771 0.815270461 0.838114748 0.823788344 0.867007462 325675740 nirb Rhodococcus equi ATCC 33707 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus equi; 0.859865627 0.920771746 0.833511818 0.822360105 0.846847789 0.924602951 0.895173493 0.857629106 0.85539204 0.811830263 0.824339239 0.923513865 0.876298449 379708080 terc Nocardia cyriacigeorgica GUH-2 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia cyriacigeorgica; 1.219728503 1.235107965 1.200543871 1.20597117 1.20579374 1.214015474 1.179779336 1.200455497 1.189199165 1.221835594 1.21020402 1.213510577 1.193384593 1.195842911 1.1748559 1.203183063 1.219454967 1.223616974 383826053 terc Mycobacterium xenopi RIVM700367 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium xenopi; 1.064837079 1.120820835 1.093943562 1.082012587 1.088804527 1.126701571 1.104212052 1.09021891 1.081096391 1.109318637 1.098727416 1.091231744 1.065560113 1.052910915 1.012082907 1.060758057 1.099054921 1.117245889 149201556 dmdA Roseovarius sp. TM1035 Sulfur DMSP degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 1.086919974 1.03318021 1.012429448 1.041701574 0.974918156 1.07108518 0.958402681 0.977625227 1.05299648 0.987070142 1.008704381 0.997958991 0.973483189 1.018602107 0.96285109 0.971774124 1.053632569 1.016810836 56798485 catechol_b uncultured bacterium Organic Remediation Aromatics Other aromatics superkingdom:Bacteria; 1.028852916 1.027881202 1.051700206 1.024230307 1.024710567 1.03013584 0.993150588 0.997043415 1.03882308 1.042466134 1.029731032 1.018582208 1.027722531 1.054689571 1.007077469 1.025834536 1.036678977 1.040649264 222148583 cysI Agrobacterium vitis S4 Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium vitis; 0.985728731 0.805427636 0.762180274 0.826962966 118424325 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.816931153 0.793807856 0.824045588 0.816555399 0.848336935 0.817497195 0.844578138 0.844936301 0.845675229 0.844909091 0.797077982 223714272 arra uncultured bacterium Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 1.33424234 1.330237268 1.316132142 1.32280067 1.327769305 1.34146969 1.330745302 1.319602502 1.309141036 1.295764386 1.323945525 1.330971232 1.301251142 1.268090099 1.282331816 1.277859122 1.343437441 1.293778168 221633372 bphF1 Thermomicrobium roseum DSM 5159 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Chloroflexi;class:Thermomicrobia;order:Thermomicrobiales;family:Thermomicrobiaceae;genus:Thermomicrobium;species:Thermomicrobium roseum; 1.030473809 0.999600964 1.02396604 1.014773771 1.105256229 1.011037353 0.967350993 0.994255711 1.036479293 1.030168837 1.003212609 1.005740404 1.004853342 1.027500798 0.995449981 1.026499356 1.005955813 1.02017049 242132894 tehb Dickeya dadantii Ech703 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya dadantii; 0.975738094 0.963161218 0.968331767 1.008354651 0.986893358 0.993241107 0.981678773 1.016155922 0.975249852 0.958818228 0.985127201 0.96525706 0.954464209 0.940247049 0.94962487 0.943826378 0.934624388 0.943326588 119391547 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.022657183 0.955216432 0.957815756 0.989607903 0.956563765 0.949063282 0.928180287 0.924460654 0.965632031 0.930795273 0.916243552 0.961632086 0.937749334 0.920675007 0.928715185 0.952802033 0.993981642 0.963828642 271965657 hyaluronidase Streptosporangium roseum DSM 43021 Carbon Cycling Carbon degradation hyaluronic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 1.18947567 1.12587311 1.175545556 1.180761614 1.153071802 1.201769542 1.152497411 1.193298343 1.180616319 1.136186824 1.182079735 1.168501316 1.147621792 1.093082661 1.151751389 1.14967065 1.224080445 1.124899422 315415422 rgl Asticcacaulis excentricus CB 48 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis excentricus; 1.053335923 1.046651395 1.023030546 1.082989482 0.979344405 1.029559897 1.046708038 1.063208918 1.045132157 1.005766825 0.977407638 1.0591048 0.969165806 0.952795224 0.93445331 0.958023593 1.02996375 1.026520447 182412745 terc Opitutus terrae PB90-1 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 0.889671519 0.91215565 0.933171365 0.850128199 0.890284921 0.861650464 0.846228904 0.907552485 0.904274166 0.85516016 0.929643497 0.842747045 0.845784759 0.856143607 0.831136008 0.869543 386840391 chitinase Streptomyces hygroscopicus subsp. jinggangensis 5008 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces hygroscopicus; 1.192240521 1.145492959 1.157905092 1.159769651 1.082308248 1.154370353 1.088061688 1.139631075 1.145750466 1.111468779 1.103627216 1.140903011 1.046701312 1.11780447 1.051692917 1.094755187 1.125512646 1.112499329 255010730 acetylglucosaminidase Bacteroides fragilis 3_1_12 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides fragilis; 0.905249942 0.932617042 0.977483746 1.003195214 0.959960441 0.9871589 1.001797753 0.984397077 0.97653314 0.962001292 0.995577597 0.959536939 0.922464074 0.976445608 0.943424332 0.868473206 1.003745629 0.912844666 325915673 endoglucanase Xanthomonas vesicatoria ATCC 35937 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas vesicatoria; 1.040137177 0.995882016 1.02406848 1.035266902 0.997811779 1.046672737 1.026732798 1.010631592 1.032704889 1.01972406 0.925275825 0.96508212 0.925921078 0.929918722 0.951305925 0.92673099 1.010097031 1.022380645 88702651 nosz uncultured soil bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.971321846 0.93913855 0.903944313 0.980912639 0.930930823 0.93695796 0.928892897 0.962222173 0.950626193 0.897447177 0.928506472 0.954907831 0.906662607 0.923645118 0.91340981 0.913491522 0.968541148 0.924378237 169759881 mdla Pseudomonas putida W619 Organic Remediation Aromatics Aromatic alpha hydroxy acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 0.821605378 0.871374432 0.823340725 0.809756018 0.849648614 0.857237586 38304197 phospholipase_A2_fungi Aspergillus oryzae Carbon Cycling Carbon degradation Phospholipids superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 0.776885801 0.882094509 295675749 urec Burkholderia sp. CCGE1002 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 0.878074189 0.878215776 0.840861285 0.884421606 0.84977342 0.830876904 0.857916479 0.906601977 0.828889153 0.818713529 0.856454836 0.890333058 0.880272156 20502013 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.768199156 0.967119734 0.858033815 0.863780632 0.773333236 0.795591686 0.802786461 0.934583539 0.800378621 145251493 ophc Aspergillus niger Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 0.945332306 0.927860197 0.906215505 0.977347874 0.815740889 0.931421381 0.884084725 0.936578661 0.944555871 0.920070613 0.896087688 0.904050248 0.832342783 0.908266934 0.827921427 0.915403428 0.958859997 0.939047781 407768895 pcag Thalassospira xiamenensis M-5 = DSM 17429 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Thalassospira;species:Thalassospira xiamenensis; 0.86324816 0.866955507 0.834916864 0.930207002 0.866406875 0.877612799 0.873948792 0.848237629 0.859955804 0.891332402 0.87527836 0.894361617 0.845156521 0.83568714 0.868654136 0.910372333 0.908096022 357039623 B_lactamase_A Desulfotomaculum gibsoniae DSM 7213 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum gibsoniae; 1.254411896 1.218755191 1.220755372 1.271599423 1.211445626 1.259729836 1.206709481 1.227663348 1.209362488 1.193050538 1.205927083 1.214691167 1.197275486 1.188083495 1.120478749 1.195813285 1.265507449 1.208608591 389861998 linb Modestobacter marinus Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Geodermatophilaceae;genus:Modestobacter; 1.051749631 1.031984063 1.033433161 1.06482564 1.03653809 1.049918862 1.03622108 1.02285541 1.023289075 0.99166878 1.008496713 1.029814027 1.030301171 1.011630021 1.014390152 1.031601482 1.049545893 1.024465405 220919687 msmabcd Methylobacterium nodulans ORS 2060 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 0.985877171 0.974239047 0.954179989 0.985371563 0.953173826 0.97964095 0.988752837 0.935257679 0.965014113 0.971346129 0.954357361 0.981321977 0.95284141 0.935103371 0.954327643 0.94468349 1.014853649 0.958236203 157916699 terc Salinispora arenicola CNS-205 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora arenicola; 1.003302567 1.109399052 1.046711217 1.038976638 1.001630748 1.058463126 0.989070068 1.040167472 1.028393704 1.036672215 0.998877813 0.985616467 0.936923608 0.997558274 0.911595026 0.961717025 1.028370541 1.053860393 93357652 catb Ralstonia metallidurans CH34 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 0.964327245 0.96834365 0.994686253 1.015150219 1.027786112 0.990668725 1.014928067 1.044552029 0.98446262 0.995235053 1.024081519 1.004964429 0.969775918 0.930823408 0.934320502 0.946991458 1.01082097 0.972627158 325948647 nfsa_2 Nocardioidaceae bacterium Broad-1 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae; 1.471685702 1.439005743 1.409847923 1.436108159 1.435471381 1.451341687 1.410852127 1.402493829 1.424614717 1.415222456 1.434223871 1.426577091 1.429413942 1.389294576 1.395009774 1.392835947 1.452465348 1.394578799 386382314 amyA Streptomyces tsukubaensis NRRL18488 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces tsukubaensis; 1.187818375 1.18785454 1.20885908 1.191411578 1.19745777 1.217441181 1.207694034 1.206995723 1.194599858 1.188652075 1.193932962 1.174714682 1.181257107 1.181936868 1.171042796 1.172491484 1.185396424 1.181333992 239628858 amyA Clostridiales bacterium 1_7_47_FAA Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales; 1.243607974 1.196822156 1.189682272 1.209764394 1.180759233 1.226093965 1.195582659 1.19523534 1.210196041 1.205777755 1.189800773 1.209096414 1.167670011 1.14996098 1.141778223 1.184713939 1.235093308 1.210973268 83025978 alkb uncultured bacterium Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria; 0.920016292 1.140455404 0.954457237 1.016298073 1.00754995 0.992925162 0.959444659 0.963576803 0.961606629 0.99685912 0.957305648 1.003212152 1.000739128 0.937848926 0.958887026 0.980834484 0.986130092 0.955984471 374609997 pcpb Mycobacterium tusciae JS617 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tusciae; 0.808913979 0.798945511 0.860715705 0.82475391 0.839453198 0.84232053 0.860615388 0.903413217 0.843704342 0.839903549 0.848511669 0.78006711 0.832143724 0.839902868 156085401 arra uncultured bacterium Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 0.968131761 0.963928431 0.972937801 1.004554589 1.003737043 0.971100708 0.985732702 0.996409383 1.007973614 0.967708244 0.9831613 1.002676735 0.941979038 0.922383154 0.91369829 0.959181921 0.965928623 0.970888042 146191733 vana Bradyrhizobium sp. ORS278 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 1.17857525 1.211546062 1.139980716 1.169119297 1.166031306 1.204269229 1.158454076 1.167223001 1.150480693 1.156914121 1.168318857 1.168842822 1.124529201 1.159826763 1.158533309 1.144652745 1.160135768 1.185893427 146273428 cysI Pelotomaculum thermopropionicum SI Sulfur Other NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Pelotomaculum;species:Pelotomaculum thermopropionicum; 0.815297502 0.863416302 1.003841576 0.918708799 0.844064401 0.870417724 0.87535909 0.924910759 1.017329632 0.902993045 0.88960649 0.921396776 0.855684946 0.813354817 0.942944547 0.859188825 0.911439451 0.95775808 54018095 alkb Nocardia farcinica IFM 10152 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 1.596996202 1.533965584 1.550665289 1.553478545 1.529137854 1.548829179 1.522879264 1.546552649 1.546330698 1.528841248 1.541810853 1.559585856 1.50989549 1.486345239 1.539314329 1.519443071 1.543729496 1.515593776 85722740 terc Syntrophus aciditrophicus SB Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophaceae;genus:Syntrophus;species:Syntrophus aciditrophicus; 0.906445505 0.90652034 0.900415 0.917483486 0.876796892 0.939916012 0.877912179 0.895222451 0.930959796 0.912582488 0.840502908 0.92223223 0.800834202 0.952144552 0.884471799 0.923337622 0.933134405 0.974531356 46205997 Sir Magnetospirillum magnetotacticum MS-1 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum magnetotacticum; 0.885415837 0.851943824 0.882474936 0.851956277 0.863047375 0.85062408 0.891516723 0.83741104 0.867391548 0.92600523 0.886968471 0.898115486 0.82652698 0.79804585 0.79070893 0.818521535 0.942274125 0.929744582 91774326 mcra Methanococcoides burtonii DSM 6242 Carbon Cycling Methane Methanogenesis superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosarcinaceae;genus:Methanococcoides;species:Methanococcoides burtonii; 0.782157563 0.836690097 0.831280208 0.8362165 0.817905196 0.824284385 119956588 amyA Mycobacterium vanbaalenii PYR-1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 1.228697099 1.218096534 1.221883979 1.220398848 1.216032834 1.234334537 1.200651741 1.208554356 1.221213956 1.218978505 1.253217107 1.229436459 1.203728869 1.187578642 1.17228663 1.165088678 1.250274318 1.203045209 377541972 gdh Escherichia hermannii NBRC 105704 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia hermannii; 0.913407107 0.890491199 0.908083571 0.931817699 0.865161245 0.862612137 0.858884811 0.888068174 0.908358431 0.888314254 0.923136009 0.906198593 0.888932447 0.8491993 0.845159967 0.906886092 0.91992245 0.895432234 213925440 nirb Pseudomonas syringae pv. tomato T1 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 1.084258515 1.059589198 1.018835644 1.110968166 1.186754168 1.064408665 1.030734203 1.03526364 1.056858788 1.03158247 1.038397967 1.27268942 1.006286004 1.004903585 0.981542415 1.034446313 1.083715578 1.050592846 107784967 dsra Desulfovibrio desulfuricans Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 0.900886015 0.87250794 0.911428664 0.912034683 0.92876236 0.923200277 0.916605641 0.890665237 0.918556001 0.85909857 0.875222938 0.916671459 0.904098381 0.819550459 0.849503119 0.834007672 0.909291417 0.891264679 388457354 scnabc Fluoribacter dumoffii Tex-KL Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Legionellales;family:Legionellaceae;genus:Fluoribacter;species:Fluoribacter dumoffii; 1.016884065 1.059984184 0.907397383 1.064198953 1.07306593 1.057675651 1.024177293 1.020230168 0.989944865 1.036600111 1.027643784 1.075229523 1.011121791 0.976839897 1.014795613 1.027313642 1.060548404 1.043724838 329311300 mer Alicycliphilus denitrificans K601 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Alicycliphilus;species:Alicycliphilus denitrificans; 1.163762032 1.123237263 1.117132716 1.137117821 1.122103308 1.141499005 1.139110329 1.143504209 1.139725246 1.110423267 1.112571716 1.116769057 1.126160185 1.073484999 1.080003389 1.071843761 1.136977467 1.080271143 197625877 ppx Cyanobium sp. PCC 7001 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanobium; 0.789330059 0.791331523 0.803893386 0.851356191 0.790360846 0.818671888 404271360 poba Bradyrhizobium sp. CCGE-LA001 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 1.032884633 0.982934001 0.98620938 1.033658935 0.926380165 0.987451218 0.950077977 1.002673774 1.014727864 0.98310987 0.945730093 0.984838275 0.946635268 0.926357364 0.946261391 0.954239637 1.037158795 0.978591774 197934530 ara Streptomyces sviceus ATCC 29083 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 1.128387006 1.041329022 1.051200603 1.004218208 1.050566708 1.037350184 1.036607923 1.03046666 1.032452625 1.029533442 1.026239895 1.039657138 1.015959642 0.951221537 0.932825917 0.9802192 0.991815884 1.005674603 90336675 catechol_b Aurantimonas sp. SI85-9A1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Aurantimonas;species:Aurantimonas manganoxydans; 0.973980202 0.986766143 0.950399455 0.913792729 0.916772623 0.945403224 0.92684957 0.9026026 0.963281297 0.98698603 0.950365724 0.937211325 0.905001834 0.917422164 0.894047554 0.903600431 0.983580532 0.986885569 317018398 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.8420193 0.85080679 92117282 TIM Nitrobacter hamburgensis X14 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter hamburgensis; 0.911048005 0.871378871 0.926006853 0.880756802 0.898384306 0.880657152 0.847620539 0.870790875 0.842435382 0.859784383 0.887942171 0.868135811 0.927958898 0.835665821 0.89560515 0.792327227 0.889279148 0.905732809 83316950 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.958403305 0.931490383 0.940457511 0.973836141 0.94710054 0.918738096 0.94730834 0.908852406 0.96591366 0.953952978 0.920779025 0.936584422 0.951215964 0.837552376 0.865963886 0.882493653 0.927468021 86609427 mer Synechococcus sp. JA-2-3B'a(2-13) Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 0.942269502 0.966282115 0.956903122 0.998778859 0.934226069 0.980575976 0.931765113 0.950483949 0.935441547 0.97151977 0.956051303 0.95233322 0.948642639 0.934985793 0.940019368 0.943840805 0.974495924 0.974270227 33320075 acetylglucosaminidase Cellulomonas fimi Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas; 0.954028202 0.938076108 0.954403976 1.032965737 0.989411174 1.010266193 0.99470218 0.971259229 0.982559864 0.978820962 0.966591364 1.011247884 0.939759772 0.972313362 0.938811413 0.949529518 0.966384886 0.927502995 344338576 GAPDH_Calvin Thiocapsa marina 5811 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiocapsa;species:Thiocapsa marina; 0.977006789 0.831969796 403723075 bphc Gordonia rhizosphera NBRC 16068 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia rhizosphera; 0.896140742 0.867371196 0.905160341 0.851846711 0.870650299 0.855673615 0.876025871 0.845335688 0.828519826 0.890985134 0.86267626 0.862419346 0.902553532 0.946779424 0.896127751 46308002 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.879609331 0.859676095 0.813800096 0.891777956 0.82774669 0.80714966 0.798207374 0.827150585 0.827077778 0.829023941 422314329 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.769867336 0.814274111 0.825043668 0.942479629 0.9293419 0.869623256 0.983637535 0.934827059 0.869961726 0.946349936 0.917551823 0.920886118 0.913178039 0.827236281 0.854457345 0.912495455 0.921054346 0.936851265 3851634 phospholipase_C_fungi Magnaporthe grisea Carbon Cycling Carbon degradation Phospholipids superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe; 0.794534456 0.815369493 0.840732599 0.828841809 0.806205966 0.821018045 0.837985232 169820670 catechol Burkholderia cenocepacia MC0-3 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cenocepacia; 1.120083141 1.185815543 1.129663369 1.126298659 1.133942816 1.148342473 1.115422373 1.134067579 1.129289184 1.123143927 1.124380712 1.118634392 1.124239534 1.120922118 1.117391946 1.121864968 1.138003585 1.17975685 357225497 mer Marinobacter manganoxydans MnI7-9 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter manganoxydans; 0.957803032 0.809105763 0.914922929 1.021633913 0.82071541 0.833547008 0.88512953 0.916105663 0.853330677 0.84660575 0.873047541 0.818364439 0.833223967 0.889980507 0.883851004 325536474 arylest Xanthomonas vesicatoria ATCC 35937 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas vesicatoria; 0.832691656 0.8303885 0.882605461 0.84541723 0.831236627 0.857528107 0.832795942 0.828521617 0.844034555 0.870114809 0.806935242 377807381 pcpe Burkholderia sp. YI23 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 0.858549059 0.781257999 89512768 nifh uncultured nitrogen-fixing bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 1.474347173 1.435322292 1.425442483 1.420870339 1.406560575 1.441092924 1.401435504 1.438887632 1.416003275 1.4116303 1.430162875 1.441397285 1.375113762 1.377831725 1.396966231 1.408039671 1.406797701 1.41604369 145610993 cutinase Magnaporthe oryzae 70-15 Carbon Cycling Carbon degradation Cutin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 0.789070526 0.858175549 0.825671684 0.78728559 0.810573508 0.791926576 0.814300681 0.880137476 327544610 alkb Oxalobacteraceae bacterium IMCC9480 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae; 0.932645154 0.938595292 0.874862021 0.959289326 0.888245206 0.919862354 0.853122893 0.862101091 0.905068992 0.900062026 0.869651439 0.882965493 0.893942498 0.950589757 0.852036155 0.875016916 0.937094932 0.918638609 121495622 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.988209969 0.924470607 0.849147735 0.905059194 0.859234554 0.847773003 0.912791661 0.876945143 0.836740702 0.877729195 0.880803489 0.894699331 0.795059584 0.796506544 0.825309051 0.862415727 109452489 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.813895766 0.862736964 0.865785841 0.833675106 0.818057072 0.829923319 0.829146432 0.892588826 326952896 pcpb Pseudonocardia dioxanivorans CB1190 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Pseudonocardia;species:Pseudonocardia dioxanivorans; 1.117300918 1.084041772 1.058421038 1.11031411 1.047972432 1.076093301 1.033219424 1.042820461 1.089616298 1.073414294 1.050969629 1.065592842 1.04408462 1.061953189 0.966328955 1.045809896 1.107364022 1.065436535 349797344 cysI Neisseria wadsworthii 9715 Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria wadsworthii; 1.171217286 1.169179823 1.145289398 1.185242888 1.179395722 1.147764745 1.17252438 1.167718159 1.161646404 1.146625903 1.176066135 1.180006825 1.174316844 1.089681494 1.136360341 1.132454623 1.140136879 1.056004322 86160229 dehh109 Anaeromyxobacter dehalogenans 2CP-C Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter;species:Anaeromyxobacter dehalogenans; 1.087129747 1.125675756 1.083672319 1.085838004 1.078051307 1.104474884 1.055307665 1.090296373 1.076344839 1.086635952 1.058570946 1.09479933 1.037102227 1.047678606 1.014323293 1.056291851 1.08238099 1.087557667 302407187 cellobiase Verticillium albo-atrum VaMs.102 Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticilium;species:Verticillium albo-atrum; 0.921778085 0.871688347 0.93831896 1.019534327 0.949051742 0.9339811 0.971128459 0.981975377 0.990949984 0.929280421 0.963094232 0.96767789 0.872573031 0.8676673 0.923874999 0.853441734 0.949640695 0.88485802 156937471 fumarase_DiC4HB Ignicoccus hospitalis KIN4/I Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Desulfurococcales;family:Desulfurococcaceae;genus:Ignicoccus;species:Ignicoccus hospitalis; 1.148213086 1.174047784 1.122009127 1.163361763 1.128894093 1.149461531 1.138556966 1.151133661 1.143645369 1.141683806 1.143565631 1.148190133 1.121567666 1.119774259 1.108974548 1.139905974 1.160909431 1.15642505 255035723 amyA Dyadobacter fermentans DSM 18053 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Dyadobacter;species:Dyadobacter fermentans; 0.829796303 0.839654706 0.874158176 0.783543442 0.804770036 0.796623704 0.847244974 0.831551691 0.823095979 0.801977914 0.79617095 0.833177666 359787227 B_lactamase_A Halomonas sp. GFAJ-1 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas; 1.083392736 1.105704854 1.036904653 1.094377615 1.073409434 1.116864674 1.053839536 1.05624397 1.055549033 1.054652984 1.041590173 1.044914071 1.050074083 1.044370931 0.99592087 1.045733618 1.084188097 1.127904064 84497418 amyA Janibacter sp. HTCC2649 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Janibacter; 0.804674324 0.849549197 0.836804606 0.871742944 0.871127417 0.79785447 0.857712665 0.855250355 0.834972996 0.820398893 0.83471734 0.825573275 308752988 cysJ Ketogulonicigenium vulgare Y25 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ketogulonicigenium;species:Ketogulonicigenium vulgare; 0.88087399 0.93365436 0.923279858 0.962344009 0.949357724 0.949871101 0.909576309 0.883939458 0.88929665 0.952996298 0.942691342 0.957582959 0.919718902 0.878060685 0.87356778 0.9159141 0.932903032 0.934244626 89893343 dmsa Desulfitobacterium hafniense Y51 Organic Remediation Others NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 0.863885483 0.887452665 0.910097582 0.911185479 0.878200303 0.860249031 0.849702993 0.897478675 0.886496012 0.908431076 0.866501017 0.873106706 0.855471365 0.86355988 0.872817084 0.86547583 0.894196856 0.906641956 260900698 FBPase Vibrio parahaemolyticus AQ4037 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 1.107097709 1.138049523 1.111645878 1.149161025 1.119414628 1.118020792 1.113086325 1.135006263 1.134157685 1.105192765 1.136607259 1.144224943 1.08228815 1.06892544 1.066923419 1.108338911 1.104936198 1.087578468 294477346 cysJ Rhodobacter capsulatus SB 1003 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter capsulatus; 0.889434362 0.882682004 0.828599474 0.836687882 0.81466399 0.826019242 0.857147322 0.820569964 0.860958539 0.809581421 0.818453271 0.917328788 0.879553604 111222714 cdh Frankia alni ACN14a Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia;species:Frankia alni; 1.015998029 0.989400899 1.023954479 0.994954964 0.943058327 0.949642248 0.92336871 0.944467467 0.984521771 0.986277378 0.991504172 0.992207756 0.971637484 0.951505853 0.919321614 0.937812029 1.031241893 0.994363648 290472024 pcag Meiothermus ruber DSM 1279 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Meiothermus;species:Meiothermus ruber; 1.131245103 1.12075469 1.112309268 1.139642799 1.092442969 1.121225867 1.102445782 1.12812304 1.107703731 1.127243446 1.099742754 1.13914523 1.069403348 1.086944014 1.07411074 1.075383656 1.108695815 1.132525431 158138798 napa uncultured bacterium Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria; 0.944782629 0.931372851 0.946323324 0.938945137 0.97374439 0.95198112 0.957143246 0.932414053 0.926695021 0.925175103 0.947568722 0.970933493 0.96630523 0.93685853 0.972818566 0.960653385 0.944049816 0.986528858 133778522 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 0.842582939 0.797568329 0.890156823 0.851718548 0.809688199 0.816012977 0.824239841 0.83083323 0.831719356 0.836992266 294323508 chitinase Streptomyces clavuligerus ATCC 27064 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces clavuligerus; 1.049569193 0.994052004 0.973198637 1.047890482 0.936357934 0.986399608 0.930645396 0.957325006 1.037294012 0.972133444 1.013509553 0.97573668 0.950724733 0.953979473 0.951962251 0.980839991 1.066373457 0.963744366 146409401 exaa(moxf) Bradyrhizobium sp. BTAi1 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 1.390044486 1.37112007 1.375318289 1.366737582 1.331924687 1.385185747 1.336789934 1.353144272 1.358343724 1.356017898 1.329883157 1.351680281 1.30946107 1.309516702 1.281106252 1.328386911 1.380046273 1.349583043 268309752 catechol_b Thermomonospora curvata DSM 43183 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Thermomonosporaceae;genus:Thermomonospora;species:Thermomonospora curvata; 0.981617351 0.959448054 0.965022953 0.932259057 0.901835251 0.95265625 0.899274024 0.931963182 0.949267495 0.930315033 0.895265012 0.960423657 0.921820995 0.915389929 0.880933816 0.900371129 0.938817794 0.932760761 110162116 bphb Sphingomonas sp. CHY-1 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 1.233237293 1.192141425 1.221547442 1.24068588 1.238173049 1.221872617 1.222622003 1.23712411 1.22848376 1.213718165 1.223160373 1.244233327 1.229201549 1.187104188 1.239333931 1.216425212 1.232404745 1.186770093 76056965 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.914670325 0.900014815 0.934257523 0.909840533 0.889181392 0.895271365 0.913781181 0.902194502 0.881128003 0.913201403 0.914593966 0.929056349 0.888992958 0.904106304 0.881372756 0.888983249 0.910531033 0.922739136 61224796 phenol_oxidase Pleurotus pulmonarius Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Pleurotaceae;genus:Pleurotus; 0.96598979 0.974478238 0.985026331 0.993414198 1.012119834 1.006530172 0.98020703 0.999933578 0.975106375 0.975237431 0.987403281 0.975746462 0.967908471 0.929056033 0.915431087 0.941683113 0.975949726 0.968845004 300310928 alkk Herbaspirillum seropedicae SmR1 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herbaspirillum;species:Herbaspirillum seropedicae; 1.161929419 1.171886718 1.097517245 1.177410048 1.10337295 1.129668661 1.081235943 1.104294683 1.124570304 1.099890615 1.083401609 1.108012074 1.083597305 1.067138484 1.094869073 1.114340049 1.126394568 1.101414821 341822878 ppx Megasphaera elsdenii DSM 20460 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Megasphaera;species:Megasphaera elsdenii; 0.982787227 1.046111646 0.981423016 0.978572246 1.003015076 1.10583642 0.989592327 0.986854557 1.034034021 1.033102398 1.061978638 0.972799103 1.010654755 0.999867549 0.991609184 0.966002001 1.033859984 1.014530384 399109806 one_ring_23diox Pseudomonas pseudoalcaligenes CECT 5344 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas pseudoalcaligenes; 0.881126497 0.863939643 0.896735653 0.92515655 0.940356036 0.890541969 0.93997569 0.942845209 0.92026192 0.883377155 0.91091176 0.971735084 0.870477383 0.836788953 0.860512436 0.823655451 0.916771897 0.8246768 118424430 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.826414886 0.817088047 0.8233632 0.796644393 0.808726122 0.832670052 288895443 tktA Allochromatium vinosum DSM 180 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Allochromatium;species:Allochromatium vinosum; 0.992086461 1.048861515 0.913741687 1.024786073 0.974706313 0.998958399 0.936108685 0.859413706 0.990728847 1.017279131 0.905771477 1.02424139 0.96879444 0.943323968 0.832735239 0.986750987 0.971061954 1.017340373 112462647 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.175710529 1.116590738 1.147942355 1.163145147 1.117592344 1.158649734 1.097012982 1.137230923 1.139254806 1.123211253 1.144521853 1.158122823 1.075760539 1.091488516 1.128352512 1.125723948 1.13123382 1.095954601 159467853 actin_Viridiplantae Chlamydomonas reinhardtii Other Phylogenetic NA superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Chlorophyceae;order:Chlamydomonadales;family:Chlamydomonadaceae;genus:Chlamydomonas; 1.018015781 1.025191779 0.937950589 1.012751487 0.922069809 0.994726665 0.8994116 0.961076147 1.025532273 0.992792551 0.949583153 0.926748441 0.870487464 0.962991344 0.877217275 0.964387846 1.020296793 1.00184176 320151734 nitro Thermus scotoductus SA-01 Organic Remediation Others NA superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus;species:Thermus scotoductus; 1.1811464 1.162584257 1.145670202 1.142559964 1.107795999 1.143534103 1.08867365 1.123313501 1.15128073 1.122143034 1.090695857 1.126905291 1.056532576 1.112049685 1.009372218 1.073941524 1.148802313 1.128725222 259023257 tktA Rhodobacter sp. SW2 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter; 0.793907858 0.82999768 0.82508846 0.802289681 0.81215517 0.823953559 291549743 amyA Ruminococcus torques L2-14 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Blautia;species:[Ruminococcus] torques; 0.788037469 0.815176152 331696225 arsc Pseudonocardia dioxanivorans CB1190 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Pseudonocardia;species:Pseudonocardia dioxanivorans; 0.984805734 0.993269792 0.933262166 0.980559297 0.933560789 0.946355573 0.877178667 0.899340223 0.936132422 0.933475032 0.899630147 0.942807622 0.893669832 0.900793369 0.899004068 0.898307333 0.975813272 0.976062865 393765718 nhh Methylobacterium sp. GXF4 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 1.065084066 1.061311343 1.037135831 1.033348066 1.04421597 1.11179987 1.018516446 1.039122002 1.038797428 1.059031195 1.048964739 1.04366284 1.05735418 1.019965734 1.099124578 1.019389933 1.115156087 1.063772968 269957520 acetylglucosaminidase Xylanimonas cellulosilytica DSM 15894 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Promicromonosporaceae;genus:Xylanimonas;species:Xylanimonas cellulosilytica; 1.143974111 1.166137701 1.113795947 1.11860452 1.141926461 1.189697363 1.135007414 1.140677637 1.12944589 1.125506645 1.13554437 1.128551244 1.139482986 1.118371146 1.122494234 1.138819351 1.146583565 1.140237594 346644289 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.574879089 1.527816664 1.542273626 1.553651281 1.515166614 1.581034311 1.521013008 1.546749563 1.525993211 1.51101909 1.522728436 1.517932095 1.507800339 1.476841239 1.48793834 1.514284587 1.56647204 1.500439477 254464221 soxY Rhodobacterales bacterium Y4I Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 0.884673441 0.851586114 0.860474526 0.909650881 0.885247071 0.842702207 0.905254928 0.889586801 0.901525849 0.876078602 0.804440832 0.843883512 0.79372014 0.831437848 0.866665286 0.876529355 83317116 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.821166756 0.799774966 30138231 tktA Nitrosomonas europaea ATCC 19718 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas;species:Nitrosomonas europaea; 0.853695179 0.812325924 0.856874209 0.797018368 0.807890282 0.794235172 383294052 cysJ Serratia sp. M24T3 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia; 1.060984074 1.014096033 1.038919216 1.032704641 0.982224002 0.998810565 0.964586134 0.998855421 1.02085629 0.975293264 0.991869516 1.015140406 0.974764474 0.972656888 0.955945565 0.964944187 1.022520925 1.030388381 302428962 chitinase Streptomyces sp. SPB78 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 1.248117495 1.233390299 1.23588919 1.259611867 1.22199473 1.244390898 1.209372696 1.238609096 1.22624641 1.226625224 1.239612433 1.239767404 1.191178407 1.202716315 1.187794835 1.198684744 1.239133139 1.221384906 398317476 mhpa Amycolatopsis mediterranei S699 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 1.094681369 1.058047872 1.085904256 1.06807054 1.082760386 1.104198495 1.085858858 1.069993352 1.070076362 1.059409889 1.086671177 1.082576715 1.053463654 1.040684673 1.064923115 1.03239731 1.071589853 1.089858659 110281479 amyA Cytophaga hutchinsonii ATCC 33406 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Cytophaga;species:Cytophaga hutchinsonii; 0.836844077 0.894389582 0.839349382 0.912812321 0.819302337 0.876268838 0.818719864 0.828488156 0.870066099 0.852247854 0.845806252 0.83157471 0.830109788 0.911389358 0.930272979 163738738 B_lactamase_A Phaeobacter gallaeciensis BS107 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 1.089801358 1.02719956 1.057190156 1.077287399 1.079956084 1.091451017 1.020998677 1.059660029 1.030263916 0.998602522 0.991699456 1.010289584 1.035696745 1.008136585 1.000706871 1.013565137 1.119883205 1.076059103 288346373 cellobiase Frankia sp. EUN1f Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 1.015171211 0.989739281 0.971254704 0.985491501 0.981695643 0.983401057 0.896665311 0.971754685 1.000226902 0.930951101 0.957299764 0.965622136 0.957033547 0.906944083 0.949653137 0.940637948 1.010719602 0.972316588 62149172 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 1.010026912 0.985850726 1.008783281 1.025021986 1.071085117 0.973417632 1.022868743 1.02133249 1.04786302 0.997519449 0.980225047 1.017115062 1.003678314 0.916452662 0.903038547 0.908242124 0.972033031 0.97367697 255708188 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.8934432 0.877443175 0.823530685 0.916610146 0.824226717 0.872452516 0.894850652 0.884395543 0.874007713 0.81368178 0.867923042 0.882118371 0.939326927 254510881 FBP_aldolase Rhodobacteraceae bacterium KLH11 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 0.860673263 0.823275239 0.830607038 0.821375505 318604391 cysJ Yersinia enterocolitica subsp. palearctica Y11 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia enterocolitica; 1.077458643 1.04452238 1.03830618 1.053273676 1.057690059 1.067110085 1.018394021 1.005967249 1.061194237 1.042316876 1.033454185 1.037235512 1.034991259 0.989491302 1.020468073 1.009571866 1.06929659 1.058552297 119671145 toma Azoarcus sp. BH72 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 1.386993797 1.350825158 1.353876737 1.37698879 1.362072828 1.363117437 1.324766278 1.381393882 1.338816674 1.336529734 1.340420425 1.36611296 1.330969512 1.297572141 1.326534227 1.352202616 1.324699986 1.332227192 182636182 arsc Beijerinckia indica subsp. indica ATCC 9039 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Beijerinckia;species:Beijerinckia indica; 1.187004305 1.173683331 1.174078518 1.194325263 1.156704721 1.195950036 1.156053306 1.157178567 1.131316454 1.153343522 1.155654851 1.188543919 1.141069891 1.129245161 1.114039423 1.15880766 1.195468694 1.149238741 119505476 linb marine gamma proteobacterium HTCC2080 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 1.246122339 1.217854801 1.228129918 1.269579439 1.261600379 1.225124135 1.254947491 1.284678191 1.240764263 1.244543348 1.235722185 1.267338248 1.213031206 1.211775552 1.197114983 1.179543372 1.23659005 1.211351099 77976517 terc Yersinia intermedia ATCC 29909 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia intermedia; 1.11090328 1.121861537 1.097498053 1.099130083 1.065010019 1.113555938 1.039076513 1.054780169 1.074681138 1.079547199 1.070554889 1.058968845 1.073285592 1.074830712 1.010758989 1.08199775 1.100834999 1.098543524 344315623 acetylglucosaminidase Streptomyces sp. SirexAA-E Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 1.046523758 1.059724412 1.031266477 1.097337459 0.973803926 1.086280337 0.9134629 1.04172339 1.02278078 1.055194459 0.989849401 1.053216802 0.971516729 1.029307009 0.954837575 1.003655528 1.065617675 1.068400621 223585846 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.160509339 1.135072277 1.124683451 1.151138589 1.141333908 1.160699945 1.131380337 1.111435818 1.141141963 1.106058373 1.097093024 1.124075582 1.095942556 1.078572016 1.064875822 1.112485563 1.145912284 1.141699853 296537094 mdlc Roseomonas cervicalis ATCC 49957 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Roseomonas;species:Roseomonas cervicalis; 1.152010136 1.151171499 1.148412804 1.160080605 1.147642643 1.170344755 1.147807579 1.162669283 1.145444708 1.141263434 1.155466452 1.158810891 1.134229171 1.115089269 1.093422696 1.128738915 1.160334142 1.136170772 339787549 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.85349435 0.881409954 0.870052034 0.855002303 0.862651695 0.854472603 0.810408441 0.828914134 0.865289721 0.883183545 0.840415474 0.835276564 0.823309659 0.872789725 0.820925649 0.886025529 0.894533531 37222147 endoglucanase uncultured bacterium Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria; 1.21642314 1.18041639 1.20603193 1.236671168 1.235194599 1.239952643 1.223785924 1.221457549 1.223170199 1.216527262 1.225576023 1.236326084 1.187130817 1.163092054 1.197191531 1.204972566 1.20835424 1.184654234 238837008 mcra uncultured euryarchaeote Carbon Cycling Methane Methanogenesis superkingdom:Archaea;phylum:Euryarchaeota; 0.867050376 0.819497206 0.838228582 0.85165625 0.842668229 0.804798787 0.840214854 0.798706234 0.829013633 0.861505362 0.85404852 219863646 ccmM Cyanothece sp. PCC 7425 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 0.905633138 0.874179899 0.944212835 0.937366427 0.934897419 0.943312225 0.948237909 0.949135844 0.956441002 0.915199079 0.916321067 0.926171314 0.897186675 0.911307585 0.874619581 0.913206068 0.99014382 0.976942738 99081812 nhh Silicibacter sp. TM1040 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 0.810175893 0.836163857 0.824234531 0.822248732 319796597 tktA Variovorax paradoxus EPS Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 1.110558345 1.103717984 1.067643863 1.077821825 1.042397937 1.104526959 1.008800834 1.045312467 1.082107942 1.10050191 1.056437287 1.103273258 1.021599961 1.093540965 1.041598358 1.054630954 1.089822626 1.091425596 193244799 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 0.971144272 0.997710061 0.986168656 1.019388235 0.993331664 0.982841379 0.990251143 0.999287849 0.974953149 0.990285004 0.989198738 1.11358542 0.953820734 0.969336486 0.937396503 1.014964217 1.001515152 0.998234618 358753659 amyA Granulicella mallensis MP5ACTX8 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Granulicella;species:Granulicella mallensis; 0.825078586 0.894079348 0.80532068 0.806593223 0.778275543 0.814062993 0.80465796 154798213 gdh Babesia bovis Nitrogen Ammonification NA superkingdom:Eukaryota;phylum:Apicomplexa;class:Aconoidasida;family:Babesiidae;genus:Babesia; 0.829187188 0.808607371 76803694 alkb uncultured bacterium Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria; 0.841225033 0.890265621 0.849569578 0.877407025 0.86062082 0.899186733 0.879994239 0.870879342 0.834095388 0.887773739 0.833703385 0.870985816 0.885219198 0.910693098 269306246 ara Xylanimonas cellulosilytica DSM 15894 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Promicromonosporaceae;genus:Xylanimonas;species:Xylanimonas cellulosilytica; 1.032756143 1.053217274 1.041273937 1.039143406 1.045639911 1.066367944 1.047948143 1.008921391 1.017660536 1.045953934 1.053199945 1.059325989 1.039086224 1.059985175 1.034962879 1.056561987 1.039555577 1.063793009 148242354 FBPase Synechococcus sp. RCC307 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 0.861987143 0.817326522 0.872474534 0.870304173 0.806001903 0.831122879 0.858075649 0.807455602 0.875167696 0.848376953 0.798898836 0.821622277 0.806050999 0.865385483 0.841312112 257479111 Sir Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Alicyclobacillus;species:Alicyclobacillus acidocaldarius; 0.893507639 0.931634742 0.892398439 0.947357296 0.920695141 0.912514044 0.882874398 0.931840235 0.905074921 0.893263448 0.880399208 0.937204458 0.884269511 0.870514704 0.861489601 0.89927072 0.936465394 0.922138826 163261389 catb Bordetella petrii Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella; 0.941828508 0.915288655 0.92157452 0.980859896 0.908580368 0.938321685 0.920213605 0.927093727 0.949577266 0.933349186 0.907747655 0.92611706 0.893119228 0.931081266 0.855804067 0.893719212 0.955617905 0.914342745 149915910 GAPDH_Calvin Roseobacter sp. AzwK-3b Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 1.197031729 1.108783647 1.112397233 1.114732513 1.107260322 1.080479741 1.081904862 1.104962896 1.12792727 1.090158476 1.079663841 1.114146128 1.102017972 1.058944851 1.108577545 1.110829703 1.107720315 1.178970583 283979149 B_lactamase_A Pseudomonas fluorescens Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 1.006006375 0.980239515 0.998084454 1.003318406 0.915494429 0.959926071 0.949454286 0.970694789 0.990730815 0.983224525 0.968999205 0.957912058 0.920498789 0.949381806 0.894077 0.949287675 1.001120694 1.010907382 83951972 TIM Roseovarius nubinhibens ISM Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius;species:Roseovarius nubinhibens; 1.235642248 1.189499926 1.172293604 1.161705709 1.179322568 1.186730072 1.15838234 1.177696153 1.178204122 1.194156916 1.174289911 1.186214936 1.144624781 1.135923648 1.079376922 1.154635055 1.165582545 1.184870055 344226201 nosz endosymbiont of Riftia pachyptila (vent Ph05) Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;species:endosymbiont of Riftia pachyptila; 0.925612963 0.853968649 0.852530383 0.92779578 0.853399521 0.891776194 0.846508783 0.874010904 0.908575718 0.879978378 0.912877634 0.923215882 0.848164778 0.831941634 0.839485744 0.887883123 0.883743287 260433200 PRI Silicibacter lacuscaerulensis ITI-1157 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria lacuscaerulensis; 1.035224553 1.006694087 1.022066354 1.022546268 0.920638175 1.014581708 0.943717557 0.96836133 1.01960213 1.017984323 0.964833938 1.017702571 0.968090763 0.961639497 0.951658555 0.993224619 1.029063583 1.028725129 182633340 dehh109 Beijerinckia indica subsp. indica ATCC 9039 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Beijerinckia;species:Beijerinckia indica; 0.826891403 0.814844326 0.799179897 0.821537248 0.827250296 0.849959199 373855010 beta_agarase Opitutaceae bacterium TAV5 Carbon Cycling Carbon degradation Agar superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 0.888031477 0.935320287 0.848855513 0.929149445 0.893160287 0.88755641 0.848907127 0.883413882 0.906584059 0.900671551 0.875596877 0.900420209 0.846177038 0.973524741 0.901915231 0.920428421 0.88899212 0.932329345 212530852 phospholipase_D_fungi Penicillium marneffei ATCC 18224 Carbon Cycling Carbon degradation Phospholipids superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 1.042171654 0.992380691 0.939327742 0.984738332 0.926764688 0.942528323 0.978854827 0.966052275 0.957948876 0.978286553 0.920379274 0.94398902 0.929152045 0.919907974 0.888512953 0.921395357 0.968147217 0.960919119 344224503 atza endosymbiont of Riftia pachyptila (vent Ph05) Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;species:endosymbiont of Riftia pachyptila; 0.919838441 0.928424393 0.86000647 0.929484701 0.871448279 0.878087318 0.839542149 0.849514283 0.881442286 0.864549252 0.863959744 0.927438611 0.863761291 0.888489194 0.864045206 0.908994192 0.911492251 124488109 napa uncultured bacterium Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria; 0.863842385 0.813678966 0.881004753 0.851916871 0.858062015 0.841807751 0.783869188 0.843035199 0.820429692 0.818945151 0.858743738 0.859795443 219852155 dsra Methanosphaerula palustris E1-9c Sulfur sulfite reduction NA superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;family:Methanoregulaceae;genus:Methanosphaerula;species:Methanosphaerula palustris; 0.861334014 0.835692398 0.827639319 0.824865122 0.804760844 0.805358409 0.856913288 0.82731502 0.783090309 0.812154166 0.814778334 296092765 terc Thermobispora bispora DSM 43833 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Thermobispora;species:Thermobispora bispora; 0.90612315 0.926913598 0.887844942 0.929660347 0.887302321 0.934489389 0.926035585 0.885456396 0.880636365 0.889448655 0.89088311 0.912868132 0.849769935 0.897535989 0.875082192 0.883284433 0.9107068 111023462 ppk Rhodococcus sp. RHA1 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 0.899779638 0.99744929 0.895661612 0.888229808 0.928546996 0.911602709 0.882983 0.856162171 0.914158061 0.940367651 0.811755199 0.909164786 0.84736497 0.894299352 0.876747366 0.93664888 0.943330213 0.918515883 384089250 ppx Paenibacillus mucilaginosus K02 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 0.910608996 0.898869183 0.949569361 0.944473286 0.933971196 0.909116908 0.940622989 0.907905848 0.923224027 0.924690098 0.917350015 0.922154494 0.865221193 0.864689549 0.8126946 0.863532012 0.937524787 0.916912578 169793654 napa uncultured bacterium Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria; 1.044660101 1.002316989 0.974585905 1.01659197 0.954363177 1.046223738 0.943227635 0.993764149 1.015285459 0.986306105 0.932661436 0.97647112 0.977022107 0.957352347 0.984943904 0.965974944 1.053567785 1.009844669 355540116 pcpe Mesorhizobium amorphae CCNWGS0123 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium amorphae; 0.918308314 0.823627483 0.939683729 0.85711331 0.818628695 0.853640285 0.866182863 0.850863955 0.824262002 0.884876884 0.880132178 0.989305247 0.915800256 0.851176018 296394412 cysJ Segniliparus rotundus DSM 44985 Sulfur Reduction NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Segniliparaceae;genus:Segniliparus;species:Segniliparus rotundus; 1.13259236 1.059955079 1.049075636 1.108489919 1.050709347 1.107411707 1.089871403 1.1536762 1.153412874 1.045600889 1.041033928 1.091057814 1.05120426 1.056600206 1.027044944 1.090364191 1.102851975 1.058122368 30138789 arylest Nitrosomonas europaea ATCC 19718 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas;species:Nitrosomonas europaea; 1.167502681 1.180780498 1.140843786 1.1573116 1.117298068 1.19953306 1.083859145 1.08512793 1.147743257 1.131861504 1.107685057 1.111795222 1.093149604 1.112370825 1.106195225 1.125517638 1.189013235 1.113851761 311285621 mhpa Pseudomonas fluorescens WH6 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 1.007187255 1.048717503 0.971361894 1.001511923 1.024313604 1.025540252 1.006419595 0.997160636 1.026648922 1.021956904 1.006018512 0.971451475 0.998696503 0.958608873 0.940596141 0.986236967 1.031711221 1.060660835 4580557 tfdb unidentified bacterium 202NPUT Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Proteobacteria; 1.19002977 1.199521514 1.168280281 1.16137317 1.166182153 1.187818691 1.154760705 1.158330033 1.1568015 1.171114917 1.175661881 1.19524941 1.128990363 1.158047173 1.119622743 1.158942648 1.157778291 1.170940414 359149744 acetylglucosaminidase Streptomyces sp. S4 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 1.306446525 1.263126666 1.270160003 1.284555307 1.287478329 1.309785827 1.286447357 1.310564495 1.266327032 1.253555148 1.269198283 1.261266869 1.256888973 1.230417974 1.193937981 1.21234918 1.291623438 1.283647313 334091989 CsoS1_CcmK Desulfotomaculum ruminis DSM 2154 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum ruminis; 1.053953609 1.038301752 1.094436544 1.047383483 1.032719886 1.062053551 0.987514786 1.002913512 1.018672179 1.033842047 1.030615307 1.018629239 1.03970899 1.0175917 1.053977611 1.007222687 1.068870612 1.079356254 312166906 tktA Burkholderia rhizoxinica HKI 454 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia rhizoxinica; 0.935583877 0.902264773 0.922043229 0.949344268 0.850049825 0.872225642 0.868565117 0.926030845 0.955556333 0.918665598 0.916682179 0.928552204 0.830533178 0.857920372 0.873350383 0.900939693 0.95050267 0.96715401 144905828 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.878547092 0.8622239 0.855344832 0.968251995 0.921469015 0.924578301 0.880146129 0.870805692 0.886020941 0.92932129 0.872406929 0.863804714 0.856949027 0.880629202 0.825302737 0.877714286 0.8934022 0.92151666 29652454 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.067963555 1.025528325 1.099732069 1.012835168 1.053596247 1.079779705 1.074411303 1.076541452 1.031988893 1.080218938 1.092660569 1.045871302 1.029196613 1.038839108 1.009961591 1.094882104 1.029155638 1.074479561 254453253 pgk Octadecabacter antarcticus 238 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter arcticus; 1.24840425 1.223557949 1.15874964 1.203110167 1.164447096 1.205807974 1.146643588 1.185482682 1.190731617 1.185582634 1.189392868 1.18291243 1.156950853 1.158762321 1.126795544 1.147352572 1.204455255 1.191939891 17385556 protease_serine_fungi Pyrenopeziza brassicae Carbon Cycling Carbon degradation protein superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Dermateaceae;genus:Pyrenopeziza; 1.218324879 1.205644538 1.174205213 1.185794655 1.176792999 1.217389685 1.140822699 1.154306518 1.166005173 1.193513212 1.178705536 1.178441896 1.164064944 1.189926231 1.162875162 1.187644783 1.197662193 1.196103626 345008143 poba Streptomyces violaceusniger Tu 4113 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces violaceusniger; 0.786632591 0.827023108 398065936 mdlc Rhizobium sp. CF080 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 0.794988566 0.796706227 0.794740764 0.830614451 255062592 rubisco Nitrosomonas sp. AL212 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas; 1.035508945 1.038480659 1.035723801 1.060345703 1.021087137 1.02068858 1.006798934 1.065114136 1.058320367 1.040484215 0.989502157 1.010323385 1.019525502 0.999797597 0.97523187 0.980341297 1.067105529 1.055147351 308059344 ppx Pantoea vagans C9-1 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea;species:Pantoea vagans; 0.947530712 0.96014301 0.912726964 0.982614004 0.992498911 0.942755016 0.94451149 0.930663744 0.906972525 1.013554586 0.89053403 0.945823715 0.926291094 0.949041535 0.875599598 0.947591483 0.976601934 0.982047202 323365010 nifh uncultured microorganism Nitrogen Nitrogen fixation NA 1.209371836 1.209989795 1.155575169 1.224215117 1.189380076 1.220442081 1.207473274 1.219760183 1.189670782 1.191587651 1.188006952 1.237136527 1.188406041 1.158630668 1.20997994 1.213524528 1.172459165 1.188765283 374389360 hyaluronidase Paenibacillus dendritiformis C454 Carbon Cycling Carbon degradation hyaluronic acid superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus dendritiformis; 1.229168264 1.202091716 1.188537673 1.175564037 1.182960058 1.205416776 1.165426771 1.19901912 1.185472758 1.203339056 1.185441774 1.185493109 1.150294714 1.16093819 1.121608578 1.163552049 1.2110444 1.230927332 3157614 nifh unidentified nitrogen-fixing bacteria Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.950981228 1.003643221 0.945649587 0.988402318 0.962331032 1.01914769 0.960322964 0.965777961 0.984831232 0.999544802 0.99664515 0.941898051 0.949588382 0.977713831 0.918931097 0.914414591 0.929960564 0.994379464 115551736 beta_agarase Vibrio sp. PO-303 Carbon Cycling Carbon degradation Agar superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 0.82220351 0.83350205 0.792463705 0.796194857 0.792837217 0.780474681 0.799843683 0.812619115 0.786851844 0.840038446 0.745539435 0.819914068 70990042 alpha_galactosidase_fungi Aspergillus fumigatus Af293 Carbon Cycling Carbon degradation Other superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Aspergillus fumigatus; 1.072174516 1.079300924 1.076981129 1.071727565 1.028377617 1.092908472 1.028705432 1.078671677 1.076922673 1.053778437 1.040984962 1.086593979 0.992817906 1.027798727 0.972605212 1.028414881 1.049109876 1.090292571 209897567 dmsa Enterobacter cancerogenus ATCC 35316 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter cancerogenus; 0.784601285 0.825249795 0.857039379 0.898415403 0.900137939 0.820931526 0.881545754 0.815260485 0.824778923 0.842370806 0.888017021 0.854626398 0.811178545 0.878740594 0.873324677 34370136 lactase_fungi Hypocrea jecorina Carbon Cycling Carbon degradation Lactose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Hypocreaceae;genus:Hypocrea; 1.057695415 1.047632611 1.008219177 1.026313438 1.009309534 1.039569172 1.009147012 1.010334365 1.007690031 0.98952598 1.007962351 0.997363261 0.984198626 0.993347315 1.002144199 1.007748134 1.028862502 1.014732269 350553965 TIM Thiorhodospira sibirica ATCC 700588 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thiorhodospira;species:Thiorhodospira sibirica; 0.948155115 0.983167927 0.976426872 1.012674242 0.887067058 0.998305308 0.941534175 0.947570041 0.9934463 0.899483188 0.886916017 0.969302353 0.982812925 0.930055762 0.954233195 0.940621501 260887857 cpna Selenomonas sputigena ATCC 35185 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas sputigena; 0.931402391 1.00080894 0.899055505 0.975863857 0.942542874 0.974442453 0.939740056 0.943690402 0.963548647 0.946075543 0.904290544 0.95501796 0.908589743 0.89699288 0.924677987 0.937005404 0.95463047 0.985343317 321146120 mcra uncultured archaeon Carbon Cycling Methane Methanogenesis superkingdom:Archaea; 0.975653114 0.946529624 0.882979947 0.892513538 1.016678387 0.838670146 0.870115331 0.843989923 0.855789212 0.881844151 0.810831285 0.936530195 0.913320537 0.826275511 0.846043744 0.889238128 0.855623712 163662725 trze Methylobacterium extorquens PA1 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium extorquens; 1.023556792 1.08325885 0.930327204 1.028593034 1.011149427 1.047367826 0.999756565 1.025124218 0.998553582 1.051211785 1.013056181 1.028645306 1.006565058 1.007317731 0.971660521 1.019214875 1.027398967 1.070990903 398085617 bphF1 Variovorax sp. CF313 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax; 0.844176267 0.848445556 0.896873689 0.90962781 0.871263511 0.850233228 0.85208611 0.890964707 0.897801613 0.84310186 0.845071032 0.862876346 0.805198322 0.804384911 0.862253033 0.84945072 0.89643236 0.853130787 224495601 aps_apra uncultured delta proteobacterium Sulfur adenylylsulfate reductase NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 0.863634037 0.823762871 0.851766264 0.811135692 0.802613596 0.83622178 0.849664978 0.81644309 0.797671312 0.890434141 0.847135119 0.844453288 260850317 mnp Hypholoma fasciculare Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Strophariaceae;genus:Hypholoma; 0.837198869 0.840205718 0.871640309 0.828114875 0.789410339 0.831304528 388435248 acetylglucosaminidase Rhodanobacter spathiphylli B39 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Rhodanobacter;species:Rhodanobacter spathiphylli; 0.997344941 0.959879912 0.866193813 0.962527372 0.905523017 0.996715608 0.877663159 0.967215797 0.957223566 0.908132189 0.883563898 0.951243122 0.856266817 0.879345957 0.872716619 0.905069774 1.056304527 0.948740518 337268511 FBPase Mesorhizobium opportunistum WSM2075 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium opportunistum; 1.09993488 1.093238247 1.061894651 1.097757734 1.028458571 1.061906164 1.034951445 1.05470339 1.053553652 1.021551496 1.049512786 1.060991945 1.056275836 1.006581781 1.037531907 1.044262448 1.105638493 1.025405328 94984646 amyA Deinococcus geothermalis DSM 11300 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus geothermalis; 1.369826742 1.33180112 1.343211909 1.32056806 1.323376533 1.325385943 1.350179361 1.291578825 1.314142914 1.349054101 1.303712226 1.377322597 1.271794054 1.266810749 1.245245216 1.280680466 1.331339939 1.293870771 383192336 amyA Rahnella aquatilis CIP 78.65 = ATCC 33071 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Rahnella;species:Rahnella aquatilis; 0.913847319 0.815382852 0.858318444 0.82001284 0.79744041 0.831718192 0.835539215 0.803819722 0.787248193 0.793641895 0.825725157 0.798437336 346227113 mannanase Anaerophaga thermohalophila DSM 12881 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Marinilabiliaceae;genus:Anaerophaga;species:Anaerophaga thermohalophila; 1.089961416 1.149560747 1.062569659 1.12880506 1.135122559 1.071067904 1.096580268 1.073710636 1.088526996 1.120060083 1.064110577 1.097088596 1.145724617 1.105708145 0.996499874 1.032355688 1.086895768 1.087600585 340777020 nitrilase Acetobacter aceti NBRC 14818 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acetobacter;species:Acetobacter aceti; 1.160814614 0.969772556 0.90811213 0.922197591 0.836027239 0.879023742 0.834701577 0.872008184 0.894961441 0.850397416 0.918217021 0.862566217 0.815974467 0.829904012 0.845745907 0.955596891 0.916576193 0.925524805 325000982 ppx Pseudonocardia sp. P1 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Pseudonocardia; 0.939162608 0.945185386 0.855596021 0.910300767 0.858567027 0.878697385 0.882041156 0.830674949 0.904387256 0.836281869 0.874971014 0.862814617 0.864183026 0.825735681 0.827114883 0.944932556 0.94479689 190895247 badh Rhizobium etli CIAT 652 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 1.375601155 1.360100131 1.338902757 1.359057009 1.318606909 1.361101506 1.312240646 1.331821844 1.33178582 1.338787499 1.341262548 1.342268199 1.302580841 1.307629349 1.306440135 1.322288382 1.363833475 1.335884599 83953732 alkk Sulfitobacter sp. NAS-14.1 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 0.878581666 0.907904434 0.847381185 0.882549878 0.87274297 0.893669212 0.90788071 0.881774834 0.847060931 0.858635038 0.806055138 0.876538092 0.796312654 0.844015667 0.81447178 0.891638808 0.937502665 269097163 amyA Sanguibacter keddieii DSM 10542 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Sanguibacteraceae;genus:Sanguibacter;species:Sanguibacter keddieii; 0.797404969 0.784036264 407376726 mhpa Mycobacterium hassiacum DSM 44199 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium hassiacum; 0.806178707 0.877990579 0.811368289 0.835116041 0.839171602 0.87885625 0.818481354 0.80400641 0.826641866 0.779097796 0.88774951 313105078 dsra uncultured prokaryote Sulfur sulfite reduction NA 0.968205812 0.954547267 0.927146096 0.997082916 0.930337317 0.919900172 0.89848269 0.961580718 0.963308848 0.939342318 0.922367344 0.970133123 0.902657242 0.840459477 0.892448277 0.91153011 0.935160887 0.960052058 311285639 vana Pseudomonas fluorescens WH6 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 0.77822516 0.848093029 0.830579874 0.891881949 0.839589055 0.85756876 0.866648334 0.860631431 0.850240919 0.828232972 0.866936224 0.83440559 403658393 one_ring_23diox Mycobacterium fortuitum subsp. fortuitum DSM 46621 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium fortuitum; 0.788702016 0.804667136 0.81659375 0.825847413 0.834183605 0.810649561 0.790806224 30725044 acetylglucosaminidase Streptomyces thermoviolaceus Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 0.859017254 0.896157142 0.84375067 0.942584864 0.95097717 0.894572562 0.832636089 0.855237299 0.883882088 0.884879028 0.826049766 0.875047078 0.845291041 0.900327346 0.858774116 0.824594518 0.887118527 0.905925333 148555550 bend Sphingomonas wittichii RW1 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 0.910526671 0.887503215 0.914338268 0.926705567 0.871073081 0.891697843 0.883481883 0.917035134 0.873911089 0.88518689 0.871785197 0.937911984 0.845958239 0.879802021 0.87851791 0.860503254 0.888704981 0.921048166 282950639 chitinase Citrobacter rodentium ICC168 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter rodentium; 0.987998758 0.97692689 0.962153817 0.965613015 0.950860106 0.947721892 0.922536448 0.93170598 0.933596761 0.962868629 0.9358561 0.94467021 0.943576484 0.877476746 0.901884138 0.883968063 0.995079799 0.955416008 76667400 nifh uncultured nitrogen-fixing bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 1.006858299 1.026018802 0.992344395 0.979227935 0.943417117 1.00485572 0.906431888 0.947880764 0.961773962 0.950708621 0.942732024 0.930082766 0.936521961 0.945332714 0.877331137 0.950355288 1.001250308 0.974804507 73534211 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.819681268 0.803077155 0.853058348 0.83397536 0.807169805 0.800375626 0.839151747 0.838856141 91789243 vana Polaromonas sp. JS666 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 1.039781029 0.985926162 1.017612418 0.999539016 1.030725001 1.047965277 1.009271802 0.99416186 0.997568794 1.033925331 1.018760223 0.986640961 1.012253072 1.007353181 0.964223215 0.998182032 1.010927455 1.003848253 336100295 tktA Oligotropha carboxidovorans OM5 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Oligotropha;species:Oligotropha carboxidovorans; 0.824713675 0.838789492 0.852039222 0.83630057 0.81253203 0.833734782 0.85684945 0.832906396 0.823757863 0.805172919 0.838972247 0.860037878 338757684 amyA Roseobacter litoralis Och 149 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter litoralis; 0.9694253 0.957317765 0.974604108 0.993627648 0.883001552 0.943979258 0.904311501 0.948125295 0.976301928 0.936723935 0.911701508 0.952760204 0.879955658 0.880951349 0.859752447 0.941821688 0.97243648 0.999864851 357387740 cellobiase Kitasatospora setae KM-6054 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Kitasatospora;species:Kitasatospora setae; 0.858481438 0.94225697 0.890211785 0.932503655 0.876705349 0.888509997 0.844565757 0.869889434 0.808051231 0.889229884 0.83966997 0.881737585 0.852388258 0.882543404 0.851004959 0.871833272 0.894480337 0.950748276 154161090 pgk Xanthobacter autotrophicus Py2 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 0.862451528 0.950103764 0.838357743 0.942793475 0.845444953 0.837569926 0.825530557 0.84878051 0.885750374 0.903346809 0.836800247 0.914306653 0.862823513 0.83458575 0.826383679 0.865236818 0.880181353 0.863573373 182435272 RgaE Streptomyces griseus subsp. griseus NBRC 13350 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseus; 0.817875678 0.802774368 0.83032659 0.824049966 164375009 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.861002613 0.868032799 0.82751377 0.881332893 0.796212943 0.836016862 0.848629914 0.853438411 0.874424473 0.857938422 0.811040306 0.878954055 0.810041969 0.845913502 0.847106718 255264519 ppk Thalassiobium sp. R2A62 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Thalassobium; 0.949303578 0.966779939 0.879175982 0.903800124 0.944373977 1.001703751 0.897675754 0.874316658 0.860829349 0.964742785 0.860452271 0.905600567 0.942265655 0.955974945 0.92573636 0.947624727 0.933897038 0.938929218 294345244 norb Thermus thermophilus Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus; 0.854267433 0.815988505 0.826068255 0.809203916 0.806284982 0.814596737 0.792622664 0.831870998 0.864061596 317478313 amyA Bacteroides sp. 4_1_36 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides; 0.927736846 0.875614904 0.957704689 0.937036053 0.929887828 0.870210967 0.947772507 0.964377403 0.978864442 0.939808616 0.946627708 0.948202769 0.899113408 0.892214392 0.875478196 0.887087652 0.944772274 0.915431956 60476328 dsrB uncultured bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.908863215 0.797614578 0.80966345 0.908256611 0.862652583 0.787493462 387847560 amyA Fibrisoma limi BUZ 3 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Fibrisoma;species:Fibrisoma limi; 1.315120408 1.273537547 1.271096787 1.266746076 1.255710478 1.315642513 1.249453885 1.272594914 1.243399432 1.27000751 1.257173147 1.263143982 1.245633774 1.272559155 1.234309845 1.269583849 1.258692764 1.268121628 338311237 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.854727817 0.851642492 0.854515603 0.909647648 0.891926992 0.840526159 0.905997809 0.904762714 0.862328308 0.875490913 0.892520731 0.881912468 0.834878205 0.8426848 0.87585238 0.826708774 0.788687231 0.85835387 262078245 badh Haliangium ochraceum DSM 14365 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Kofleriaceae;genus:Haliangium;species:Haliangium ochraceum; 1.316135663 1.302964063 1.292554929 1.291640688 1.324865653 1.325663053 1.293859959 1.276382772 1.283717579 1.274849966 1.287829292 1.295817193 1.324516389 1.252707782 1.288221913 1.306515147 1.334372576 1.287542298 115374516 urec Stigmatella aurantiaca DW4/3-1 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 1.434612232 1.443874066 1.401310179 1.423532551 1.406225335 1.456926011 1.414141915 1.418615731 1.405611917 1.406271308 1.417705229 1.429327354 1.398997965 1.376519153 1.411127662 1.421441895 1.415188861 1.390310925 71383850 nasa uncultured bacterium Nitrogen Assimilatory N reduction NA superkingdom:Bacteria; 0.984673499 0.984957479 0.97681403 0.901195633 1.010739654 0.972792489 0.883388746 0.874652339 0.99583902 0.958998598 0.967046271 0.989424193 0.897255024 0.962705039 0.957250919 0.993807245 255957257 alkb uncultured bacterium Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria; 0.827799085 0.907011712 0.836680615 0.908405943 0.875311303 0.880200206 0.855108704 0.875353702 0.87695086 0.869753564 0.860772504 0.865141977 0.833801729 0.837946929 0.86704959 0.830632859 0.873870784 0.901945637 343523645 amyA Actinomyces sp. oral taxon 175 str. F0384 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 175; 1.172976732 1.161020899 1.161261219 1.188618088 1.177309454 1.182191499 1.153704446 1.178398412 1.155388838 1.169489551 1.16955115 1.189446679 1.148930498 1.153041714 1.155759216 1.133270125 1.179088664 1.161591212 379990269 dsrB uncultured bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.828513658 0.799724424 0.82811469 0.840202618 0.857916588 0.815599109 119356634 AcnA Chlorobium phaeobacteroides DSM 266 Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeobacteroides; 0.86779419 0.882845825 0.915326713 0.907647931 0.916659673 0.996503147 0.916293978 0.909731995 0.923081672 0.893756466 0.88035581 0.904982893 0.854656056 0.85257305 0.870630921 0.940358509 0.952944635 402702278 catechol Pseudomonas fragi A22 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fragi; 1.200113746 1.161550558 1.164334789 1.167800945 1.169888643 1.221178793 1.15594554 1.143056134 1.163713915 1.205700986 1.159127084 1.172144446 1.165741409 1.175014889 1.187312819 1.162234216 1.177962062 1.199863423 353200544 hyaluronidase Paenibacillus lactis 154 Carbon Cycling Carbon degradation hyaluronic acid superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus lactis; 0.829611355 0.81790424 0.875854507 0.939653487 0.916543473 0.84311425 0.881362439 0.806696416 0.889111378 0.882334002 0.862385634 0.899691234 0.8262976 0.879362692 0.855765698 116623106 ara Solibacter usitatus Ellin6076 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 1.056307667 1.014093392 1.054660279 1.101040163 1.078526795 1.03111409 1.070118952 1.079636775 1.087902772 1.039969979 1.039011255 1.087958219 1.054062177 1.014774122 1.038783925 1.024270392 1.050984252 0.981664972 19879576 soxY Chlorobium limicola Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium; 0.844771048 0.847346342 0.813550922 0.882976156 0.873334292 0.880830989 0.824005451 0.830869505 0.819374104 0.823521783 0.859026367 0.793538358 0.880150123 0.880217384 0.853604422 0.844704996 0.885978979 262080950 ccmL Haliangium ochraceum DSM 14365 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Kofleriaceae;genus:Haliangium;species:Haliangium ochraceum; 0.984751114 1.003503478 0.981501389 0.985570731 0.983731969 1.04021324 1.007646137 1.041401605 0.994712299 0.999631733 1.005383334 0.971731029 0.963666032 0.957266179 0.906883377 0.946746989 1.004006439 1.030541265 389865306 amyA Modestobacter marinus Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Geodermatophilaceae;genus:Modestobacter; 1.278995615 1.312332492 1.264747781 1.281753518 1.245670002 1.295435163 1.236551048 1.289458162 1.23849519 1.280053228 1.247342546 1.283679091 1.234051939 1.235814521 1.242622445 1.241325991 1.290107741 1.282571151 94482874 rubisco Telmatospirillum siberiense Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Telmatospirillum; 0.933579355 0.967628361 0.956266286 0.982527876 0.943108768 0.97420308 0.936857338 0.982606398 0.972187604 0.967220533 0.985032497 0.988769374 0.961657619 0.923893831 0.958686592 0.942562601 1.062252928 0.959201032 346644315 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.137651023 1.192821408 1.181109091 1.138287497 1.133604782 1.164377578 1.111501199 1.095045464 1.114536837 1.185150307 1.127992409 1.1536932 1.129271826 1.123431294 1.092334468 1.118016751 1.14143692 1.169298242 359731524 mer Rhodococcus pyridinivorans AK37 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus pyridinivorans; 0.990470192 0.97022787 0.978302509 1.077533181 0.880196908 0.939068921 0.992993377 0.973315902 1.019801005 0.951116329 0.95730297 0.973195995 0.893537929 0.925563771 0.915076821 0.935921744 1.021317873 1.000743052 377528051 cysJ Gordonia sputi NBRC 100414 Sulfur Reduction NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia sputi; 0.840774138 0.849832216 0.840226208 0.835968441 0.833025153 0.804857757 0.81825277 0.864844264 39412 amyA Bacillus circulans Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 0.968848648 0.94552722 0.977660197 0.96644714 0.927447315 0.923350868 0.88470189 0.928240024 0.937266659 0.956691507 0.961227871 0.949846045 0.950558175 0.968221053 0.90800928 0.914580256 0.915860244 0.938159829 222090440 protease_serine_fungi Chaetomium globosum Carbon Cycling Carbon degradation protein superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium; 1.337165482 1.314701258 1.299928496 1.290211637 1.287006372 1.31474684 1.293539477 1.281530983 1.30503298 1.282580207 1.282114648 1.312138535 1.253451636 1.268124685 1.235348411 1.281438065 1.324521281 1.305983596 473250 phta Pseudomonas pseudoalcaligenes Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 1.062690473 1.048786311 1.100201857 1.078028493 1.025702853 1.095406094 1.066452895 1.056839448 1.042378057 1.054089959 1.027084921 1.045555596 1.048722655 1.075024486 1.04782063 1.085281904 1.069076501 1.063464636 153962928 sqr uncultured bacterium Sulfur Sulfide Oxidation NA superkingdom:Bacteria; 1.081867354 1.099653778 1.030717545 1.120386499 1.093464291 1.085586229 1.136664249 1.142383053 1.069828272 1.09362014 1.10978079 1.134401649 1.091562033 1.101317132 1.130225743 1.105857765 1.07164344 1.034796011 256784623 endochitinase Streptomyces lividans TK24 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces lividans; 0.888816139 0.869847739 0.866470954 0.864999085 0.853452975 0.85979713 0.870857839 0.82246798 0.898999717 0.884725163 0.838279473 0.864890088 0.947451031 0.824194207 30269533 nasa uncultured bacterium Nitrogen Assimilatory N reduction NA superkingdom:Bacteria; 0.936373501 0.920917758 0.935193909 0.992783199 0.930113188 0.970747676 0.951114727 0.972631986 0.962924932 0.893977773 0.930864713 0.91932347 0.939625864 0.888059944 0.873535509 0.882875552 0.97654389 0.963960807 306487951 nirs uncultured organism Nitrogen Denitrification NA 0.950473216 1.021813447 0.968754927 0.996929044 0.969249395 0.972779259 0.949374143 0.996041232 1.007980096 0.953259755 0.9342506 0.946670161 0.908328253 0.899160717 0.893952111 0.898512441 0.989444382 0.956026092 171743234 ppx Bifidobacterium dentium ATCC 27678 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium dentium; 0.817944189 0.80147342 0.879924298 0.887550874 0.885680546 0.843841069 0.901963687 0.868111984 0.885382078 0.823810692 0.845685493 0.847089836 0.835470032 0.849425991 348027649 linb Glaciecola nitratireducens FR1064 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Glaciecola;species:Glaciecola nitratireducens; 0.87747979 0.865289587 0.843408666 0.850646854 0.877036301 0.884156854 0.85874293 0.870607871 0.873699373 0.890617374 0.863160069 0.829610258 0.832467571 0.886962437 0.839764219 0.890548507 0.8797344 328451842 mer Marinithermus hydrothermalis DSM 14884 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Marinithermus;species:Marinithermus hydrothermalis; 1.070994864 1.069570797 1.030837086 1.0550225 1.036933232 1.105104761 1.049386553 1.012227206 1.046182024 1.076739763 1.018050605 1.067441817 1.019977742 1.067278325 0.978326761 1.018867236 1.075759544 1.062021603 94549921 mer Candidatus Koribacter versatilis Ellin345 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Acidobacteria;genus:Candidatus Koribacter;species:Candidatus Koribacter versatilis; 0.933837483 0.825296461 0.880315953 0.899689351 0.923835763 0.852424839 0.919907069 0.895669485 0.832788128 0.907941179 0.912351457 0.896898225 0.798973248 0.837591928 0.833268001 0.835495654 376002065 nira Arthrospira sp. PCC 8005 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Arthrospira; 0.830193092 0.81537601 0.840692599 0.88898216 0.840445093 0.841892462 0.87247868 0.814182031 0.844468104 0.841807953 166861916 cmci Pseudomonas putida GB-1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 1.140225863 1.113832161 1.112357672 1.123788164 1.122514781 1.121729013 1.108011279 1.125218938 1.092197497 1.096404711 1.124644016 1.099866298 1.083310114 1.041992618 1.031594632 1.04986062 1.121887138 1.100023807 307941570 tehb Roseibium sp. TrichSKD4 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseibium; 0.922925305 0.871312274 0.885773452 0.94714907 0.908850649 0.898455386 0.92705712 0.929982835 0.964038381 0.879745207 0.878107689 0.935153806 0.880016123 0.823297495 0.836972162 0.820143728 0.934321554 0.892481722 90104545 ben_bcla Rhodopseudomonas palustris BisB18 virulence NA NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 0.778116104 0.798986299 182382460 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.409315585 1.386418544 1.360943353 1.36424584 1.327239692 1.356872216 1.334528069 1.324924209 1.358988202 1.328394964 1.338358504 1.358197122 1.320132912 1.287495823 1.330763396 1.341091816 1.366292136 1.323731207 320334003 cda Deinococcus maricopensis DSM 21211 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus maricopensis; 0.803267291 0.838648744 0.861517216 0.806088854 0.823087759 0.80783562 0.819801822 0.836903988 359792313 FBPase Mesorhizobium alhagi CCNWXJ12-2 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium alhagi; 0.990273417 0.991945761 0.969974216 0.955090304 1.001043892 1.006269001 0.913608767 0.892041809 0.940097261 0.957087659 0.976988129 0.950210937 0.949116776 0.945881297 0.926566423 0.963181342 1.007234977 0.983014365 255715874 pec_Cdeg Lachancea thermotolerans Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Saccharomycetaceae;genus:Lachancea;species:Lachancea thermotolerans; 1.100518717 0.852204203 0.814851837 1.021184264 1.017808745 0.958792694 1.008476888 0.975708417 1.07472793 0.904579971 1.005888718 1.046441942 0.988232412 0.860114349 0.99118701 0.890639234 0.901351644 255502795 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.020024059 0.91490481 0.807657876 0.814681831 0.815946608 0.847150418 0.79622773 0.92028382 0.903441436 0.834725651 0.843762847 0.864002194 0.889462436 316254288 cutinase Segniliparus rugosus ATCC BAA-974 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Segniliparaceae;genus:Segniliparus;species:Segniliparus rugosus; 0.82661797 0.81431398 0.84228087 0.837631324 0.796593202 0.857812392 0.841368623 0.793880583 0.822094248 116623620 alginase Candidatus Solibacter usitatus Ellin6076 Carbon Cycling Carbon degradation Alginate superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 1.221450383 1.186350206 1.225039357 1.223037609 1.19076522 1.237324556 1.200954744 1.208874551 1.208869092 1.187267512 1.226043605 1.206900026 1.189672556 1.148736655 1.135781512 1.159592062 1.2180768 1.171728203 344315293 acetylglucosaminidase Streptomyces sp. SirexAA-E Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 1.228462956 1.215963464 1.200285129 1.207586695 1.185082978 1.219322176 1.164430169 1.189332116 1.197569971 1.194781453 1.172921159 1.17957819 1.1742829 1.169659843 1.167373448 1.176343053 1.223969667 1.209224888 73534229 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 1.125611695 1.109316133 1.080859644 1.121991767 1.116127697 1.111715221 1.119911479 1.13757733 1.13113666 1.118814316 1.099333982 1.133033577 1.094943788 1.103597313 1.072049756 1.109942817 1.126538429 1.076547974 296256676 TIM Methylosinus trichosporium OB3b Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylocystaceae;genus:Methylosinus;species:Methylosinus trichosporium; 0.887536369 0.854520809 0.895990308 0.925282181 0.927651735 0.900345549 0.892700897 0.888198843 0.868961634 0.842654965 0.836293547 0.879757997 0.827655299 0.824697378 0.836771132 0.854044775 0.922361374 0.887798132 328841152 ppx Asticcacaulis biprosthecum C19 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis biprosthecium; 0.8200253 0.901567104 0.840055601 0.808026616 0.811884971 0.804919229 0.865951311 73763090 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.002665933 0.939053587 0.97260205 0.996501936 0.997941718 0.95805617 1.008209296 0.97476917 0.971297929 0.939137973 0.945052474 0.993032012 0.9144718 0.914219877 0.861248718 0.895422305 1.007132015 1.01207165 67902508 endochitinase Aspergillus nidulans FGSC A4 Carbon Cycling Carbon degradation Chitin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 0.784872414 0.806363157 0.83328548 0.827369622 0.80814951 0.805495256 254431828 ccmL Cyanobium sp. PCC 7001 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanobium; 1.090152417 1.106795246 0.999636868 1.075612354 1.054289486 1.117706317 1.046110314 1.069747899 1.044017058 1.065693998 1.057727201 1.069730452 1.048815908 1.068027232 1.034110476 1.056997017 1.065644428 1.080213384 22652034 CsoS1_CcmK Synechococcus sp. PCC 7002 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 0.919188086 0.931391196 0.827027933 0.943598605 0.896079313 0.906208185 0.860697498 0.883107198 0.940410934 0.927029663 0.826765585 0.891773758 0.883033773 0.89208792 0.817915741 0.865473671 0.918267705 0.940374169 142586 cellobiase Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus circulans; 0.864968335 0.880663548 0.883742054 0.866745786 0.863985432 0.858239995 0.847479859 0.84247197 0.826824301 0.89900905 0.833471807 0.832628056 0.900499656 0.825302599 0.82835015 0.817306821 0.866912789 0.859897637 167461492 CsoS1_CcmK Paenibacillus larvae subsp. larvae BRL-230010 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus larvae; 0.865626291 0.889522394 0.875132864 0.899619465 0.852745997 0.950228563 0.829884794 0.863578287 0.869426618 0.86245175 0.895310787 0.850682473 0.870205858 0.847928176 0.857464163 0.880233 0.912618919 383337051 chnb Mycobacterium phlei RIVM601174 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium phlei; 0.930169587 0.939741423 0.922827285 0.941709813 0.913553024 0.949901393 0.9413285 0.902630177 0.943284977 0.914591472 0.954928075 0.936848776 0.876645649 0.873461518 0.806937865 0.874739241 0.913509636 0.916940688 378571928 terc Paenibacillus mucilaginosus 3016 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 0.865220619 0.850682284 0.826565311 0.844824426 0.829894599 0.816231416 0.839304386 0.897076728 0.826656751 0.817477299 0.834766403 0.842740824 109641914 ppx Desulfitobacterium hafniense DCB-2 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 0.888161951 0.878542386 0.844501343 0.845106719 0.869491211 0.840421785 0.834662988 0.868549466 0.864745489 0.918203364 0.884233877 0.873151339 0.847626626 0.82477804 0.863089674 0.832687521 0.853952005 389666050 B_lactamase_A Nitratireductor aquibiodomus RA22 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Nitratireductor;species:Nitratireductor aquibiodomus; 0.923690351 0.895633388 0.878032794 0.919749036 0.858587998 0.868068722 0.845997103 0.913712477 0.907795398 0.895219367 0.849441085 0.894197229 0.848277785 0.874008385 0.848874748 0.86211933 0.922894006 0.849446582 56695068 rd Ruegeria pomeroyi DSS-3 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 1.090118924 1.092266177 1.102545133 1.11052525 1.130595547 1.121396751 1.119646008 1.131985908 1.130667276 1.083129519 1.120262789 1.121929343 1.08467353 1.046181569 1.082411695 1.063005692 1.131166721 1.096901213 332185685 amyA Sphingomonas sp. S17 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 1.189731028 1.19933875 1.215084283 1.222822463 1.195392017 1.199288802 1.198375753 1.203362181 1.17326736 1.201071219 1.189103568 1.22798865 1.157374188 1.172430934 1.169009034 1.200404895 1.193607008 1.1908862 302423302 exopolygalacturonase_fungi Verticillium albo-atrum VaMs.102 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticillium;species:Verticillium alfalfae; 0.84148454 0.888250785 0.889081545 0.83379793 0.807965262 0.808962114 0.82727598 0.84735646 0.853754059 0.90916431 312958202 terc Pseudomonas fluorescens WH6 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 1.231920978 1.187274383 1.25405397 1.21269137 1.326559895 1.267382684 1.367633078 1.215570303 1.205872111 1.321366862 1.297788783 1.268193194 1.254186518 1.314963098 1.261145135 1.27187011 1.235600049 1.218624296 119195933 phospholipase_C_fungi Coccidioides immitis RS Carbon Cycling Carbon degradation Phospholipids superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;genus:Coccidioides;species:Coccidioides immitis; 0.922300524 0.88195783 0.901431211 0.937022513 0.913125709 0.865957815 0.86163404 0.857099804 0.929885949 0.927295357 0.934459844 0.932039827 0.885839022 0.84388574 0.861805536 0.859059818 0.949970349 0.899787072 99030553 ppk uncultured bacterium Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria; 0.968705529 1.08205561 0.875304299 1.121010977 0.974542826 0.932993706 0.996750806 0.949883983 0.99685208 0.952423651 0.913924854 1.021268654 0.95983379 0.874610406 0.831619124 0.962664337 0.989312255 0.902738977 169848168 glx Coprinopsis cinerea okayama7#130 Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 0.85010566 0.820999041 0.838341779 0.806565694 309393258 cysJ Stigmatella aurantiaca DW4/3-1 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 0.944916139 0.937734603 0.899614108 0.952645201 0.889482659 0.947048235 0.920629962 0.91223242 0.930410623 0.909703904 0.903319025 0.890121046 0.835173409 0.909988363 0.943946351 0.827146403 0.937941381 0.925129192 304392415 mer Ahrensia sp. R2A130 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ahrensia; 0.784652277 0.857765456 0.839348975 0.878053364 0.828633032 0.782333354 0.846878727 0.805701813 0.810811853 0.860801698 239809545 xylanase Paecilomyces sp. J18 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Paecilomyces; 0.885889919 0.913354396 0.933799867 0.899629037 0.880297667 0.932063878 0.922924511 0.844579423 0.876208692 0.939100589 0.927469743 0.939543216 0.868051556 0.910514144 0.972795994 0.91848845 0.905878288 0.930437049 29606364 urec Streptomyces avermitilis MA-4680 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 0.973685924 0.946976048 0.989755101 1.035118736 0.991718792 0.976464429 1.004586563 1.031582028 0.992718885 0.951859295 1.013442173 1.0290954 0.999481637 0.895481755 0.963587129 0.924824967 0.979556466 0.950653789 169657240 nirs Thauera sp. 63 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Thauera; 0.986907304 1.040085956 0.979888806 0.966236331 1.005870128 1.023057304 0.99909736 0.973044595 0.979175532 0.994028724 0.985446471 1.005564009 0.996231868 0.993154447 0.97978807 1.0154711 0.988636922 0.996240199 15613172 cysJ Bacillus halodurans C-125 Sulfur Reduction NA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus halodurans; 0.891699138 0.812941993 0.769633617 0.806716409 0.847441095 0.80960289 291436315 terc Streptomyces ghanaensis ATCC 14672 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces ghanaensis; 1.160191791 1.127385839 1.280285786 1.2180682 1.155401152 1.208350791 1.080242797 1.225374054 1.123785142 1.174634374 1.110979912 1.124717337 1.12404704 1.158747942 1.139170362 1.152902437 1.174516849 1.15415587 353209424 exaa(moxf) Hyphomicrobium denitrificans 1NES1 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium;species:Hyphomicrobium denitrificans; 0.857842567 0.821089466 0.843976717 0.846768771 0.872945955 0.84431884 0.820192597 0.871336608 0.840298599 0.782554983 0.831408181 0.808948848 0.838819801 0.790412071 0.844890961 0.846349038 148832047 terc Erythrobacter sp. SD-21 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter; 0.814434565 0.878236407 0.805780018 0.786670002 0.851080982 0.867197474 0.891694327 0.842497654 0.805919631 0.895371083 0.848986612 0.823838336 0.85096282 0.786989865 0.856365158 359353212 dsra Sphaerochaeta pleomorpha str. Grapes Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Sphaerochaeta;species:Sphaerochaeta pleomorpha; 0.832788042 0.832004698 0.881116489 0.801365654 0.81734374 0.882086119 77380811 urec Pseudomonas fluorescens PfO-1 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 1.472403607 1.46260351 1.457911376 1.442157486 1.436857919 1.487368508 1.43479425 1.467594202 1.426647458 1.451471598 1.455915493 1.472185679 1.415587157 1.459559655 1.461529212 1.465040153 1.43359353 1.439744016 384371446 one_ring_23diox bacterium enrichment culture clone pahAc7 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria; 0.828661679 0.955234101 0.893401457 0.98553079 0.932323471 0.93102867 0.898567285 0.88200008 0.881097434 0.949901142 0.837208281 0.894959292 0.929666064 0.888826597 0.882350729 0.943588718 0.852937438 0.920904217 11322380 Cl_peroxidase_fungi Leptoxyphium fumago Organic Remediation Aromatics Other aromatics superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Capnodiales;family:Capnodiaceae;genus:Leptoxyphium; 0.847288278 0.852087623 0.844533256 0.851245505 0.862959807 0.820150715 0.837970961 0.845269871 0.81895297 0.823629944 0.860495083 0.85893914 0.893999653 391857729 exaa(moxf) Hydrocarboniphaga effusa AP103 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Sinobacteraceae;genus:Hydrocarboniphaga;species:Hydrocarboniphaga effusa; 1.132836473 1.16269578 1.133509374 1.186307519 1.20045844 1.128730502 1.170322651 1.183239871 1.162371593 1.118598402 1.133454545 1.194716719 1.135759351 1.113488345 1.105888537 1.12458273 1.17954906 1.100013727 14209512 pcpe Burkholderia sp. NK8 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 1.137458198 1.067395156 1.071191501 1.039891003 1.064818535 1.129684557 1.032378341 1.028060377 1.04174127 1.088732049 1.062424847 1.045270076 1.070572487 1.065073435 1.020602217 1.058654985 1.024804824 1.084626408 209530017 TIM Gluconacetobacter diazotrophicus PAl 5 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter diazotrophicus; 0.827437728 0.828847956 355536679 xyla Agrobacterium tumefaciens CCNWGS0286 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 1.07780251 1.007977191 1.074085106 1.016713148 0.972745362 1.019855516 0.971026017 0.986319985 1.058545287 1.030352373 0.973048531 1.015466387 0.959252872 1.011508663 0.956960355 0.979019196 1.047583697 1.04902276 39997654 ppx Geobacter sulfurreducens PCA Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter sulfurreducens; 0.830724627 0.858013649 0.851790037 1.060014211 0.896812872 0.819178861 1.074650883 0.896893616 0.865896494 0.86688898 0.818618112 0.892350504 0.79898401 0.823086284 0.848666078 0.878830182 407201172 dehh109 Celeribacter baekdonensis B30 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Celeribacter;species:Celeribacter baekdonensis; 1.117540105 1.103953855 1.118013662 1.12608342 1.064632132 1.099959499 1.060370069 1.124169164 1.13713834 1.080071202 1.08814194 1.107392959 1.045955555 1.083985838 1.022361902 1.082637414 1.125004567 1.106618016 226304672 linb Rhodococcus erythropolis PR4 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 1.385329197 1.336434907 1.344569872 1.342572754 1.323942899 1.378907988 1.30283469 1.341048698 1.328129957 1.336327212 1.315502573 1.340428829 1.311829067 1.318852442 1.305872903 1.333010618 1.342536689 1.336805054 302436846 amyA Streptomyces sp. AA4 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 0.97603047 1.026146444 0.955756915 0.970998789 0.923997315 0.965411393 0.905196546 0.877219895 0.943231538 0.915779041 0.928096098 0.906335291 0.865821903 0.891849023 0.890712986 0.87968675 0.95551374 1.005633264 320355026 dsra Desulfobulbus propionicus DSM 2032 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobulbaceae;genus:Desulfobulbus;species:Desulfobulbus propionicus; 0.769343025 0.815175812 0.848981702 0.794648464 0.841123137 0.794884862 298373670 amyA Bacteroidetes oral taxon 274 str. F0058 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;species:Bacteroidetes oral taxon 274; 0.838614852 0.807552368 0.812648765 0.817194216 0.825929529 0.79520687 0.856474079 0.861447246 288942597 PRI Allochromatium vinosum DSM 180 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Allochromatium;species:Allochromatium vinosum; 1.133453227 1.110048873 1.083899574 1.119931209 1.067157603 1.101814848 1.07457358 1.102479228 1.102847952 1.096267569 1.086248117 1.093271872 1.056120233 1.060135725 1.017043202 1.036718785 1.110090468 1.106072463 46850256 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.783473795 0.858231071 0.80864514 0.796464425 0.831968992 0.814549563 0.824705554 0.797491235 193244841 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 0.944815976 0.897876224 0.889933933 0.867722855 0.902133091 0.896413622 0.886900658 0.878501567 0.91541229 0.906372905 0.873566299 0.908594087 0.86145436 0.853467687 0.870079575 0.900652321 0.937084616 374847133 pcpb Nocardia cyriacigeorgica GUH-2 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia cyriacigeorgica; 0.807550364 0.870954219 0.866638817 0.792693906 0.817448805 0.876932442 0.886121115 0.841236306 32307667 rubisco uncultured bacterium Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria; 0.812715811 0.867759489 0.802718201 0.853599905 0.808200258 1.007721429 0.858041135 0.862241429 0.838916977 99030557 ppk uncultured bacterium Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria; 0.961748552 0.929420978 0.962264116 0.98484442 0.904650744 0.937821941 0.918685941 0.957528601 0.954432799 0.97077469 0.936791133 0.958160508 0.935389665 0.952149529 0.922800954 0.939215543 0.983561423 0.949174492 16503486 napa Salmonella enterica subsp. enterica serovar Typhi Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 0.856853904 0.872495131 0.830422503 0.804230584 331022037 poba Pseudomonas syringae pv. oryzae str. 1_6 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas coronafaciens; 1.011855709 1.015710707 1.005292138 1.000266012 1.018048171 1.02297315 1.003486647 0.987841491 0.981952251 1.023631189 0.978992099 1.004966632 0.956478997 0.979624459 0.923171699 0.959329442 1.008388812 1.000542158 378549585 amyA Citricoccus sp. CH26A Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Citricoccus; 1.130860659 1.151449899 1.12176614 1.158262221 1.13007744 1.162370112 1.114637007 1.10464571 1.095203655 1.122971168 1.127612032 1.126817241 1.112049305 1.113589879 1.08912034 1.141230577 1.145099958 1.132598369 291614160 SoxA Sideroxydans lithotrophicus ES-1 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Gallionellales;family:Gallionellaceae;genus:Sideroxydans;species:Sideroxydans lithotrophicus; 0.883800855 0.858785749 0.877463815 0.888777613 0.889103417 0.832342742 0.826796792 0.836618223 0.811448036 0.80149575 0.786510138 0.822098523 0.784717986 0.859066797 0.883522083 0.89060672 28852189 trzn Pseudomonas syringae pv. tomato str. DC3000 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 0.833422365 0.805243929 214030377 SoxV Ruegeria sp. R11 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 0.83262636 0.827469537 0.835885453 0.887863948 0.810974774 0.844730505 0.850904439 0.851355467 0.820974316 0.824226667 0.874784522 0.864171021 379990593 dsrB uncultured bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.791407409 0.878285998 0.818376633 0.839467801 0.909457213 0.870464934 0.809351974 0.883876397 0.871749371 0.803403408 0.805865121 0.885884374 0.823347588 408485199 cmci Rhizobium lupini HPC(L) Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium lupini; 1.053989564 1.060021275 1.004109657 1.031815132 1.098213789 1.041790612 0.996669587 0.988852124 1.003039923 1.058335785 1.053108897 1.051592911 1.053364385 1.032129304 1.045164788 1.035282077 1.068890661 1.050890872 134055736 nitrilase Aspergillus niger Organic Remediation Aromatics Other aromatics superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 0.833662566 0.823337912 0.8002324 0.84117899 0.829102702 0.810794308 159180313 phn alpha proteobacterium BAL199 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 0.817162096 0.817767084 0.805386791 0.834175794 0.79700466 0.825092195 0.92862198 0.813733694 0.832593916 0.834870835 0.821590657 329955758 rgl Bacteroides clarus YIT 12056 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides clarus; 0.775261522 0.823082114 0.810576706 0.815406033 0.814610384 0.803418598 114543924 PRK Roseovarius sp. HTCC2601 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pelagibaca;species:Pelagibaca bermudensis; 0.827260343 0.843022444 0.817606474 0.817978273 0.794743696 0.833321723 0.80477219 0.796146204 0.798919835 0.841723204 91777807 mhpc Burkholderia xenovorans LB400 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 0.796014206 0.856735764 0.845412112 0.928306593 0.92432776 0.985802662 0.829776698 0.794724189 0.939328911 0.932650653 0.949672192 0.975199746 0.87167894 1.015298483 0.821300313 0.932768027 310867617 phenol_oxidase Bacillus atrophaeus 1942 Carbon Cycling Carbon degradation Lignin superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus atrophaeus; 0.860470365 0.805582242 0.838681864 0.819301252 0.831207465 0.846109751 0.8257611 0.815724456 0.796286487 0.887514199 0.832254062 0.856600642 0.833400651 0.878693715 41410334 cutinase Mycobacterium avium subsp. paratuberculosis K-10 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 0.961765864 0.970261854 0.974992052 0.959316376 0.882009235 0.951161763 0.920016419 0.961869096 0.959004005 0.991782336 0.8948211 0.940449964 0.909712862 0.913664417 0.911825508 0.923626031 0.976332457 0.991349531 345868906 terc Bizionia argentinensis JUB59 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Bizionia;species:Bizionia argentinensis; 0.79650374 0.802617086 0.841705956 0.841953509 0.776439911 0.812240106 0.771170597 0.862809551 339628013 fthfs Sulfobacillus acidophilus TPY Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XVII. Incertae Sedis;genus:Sulfobacillus;species:Sulfobacillus acidophilus; 0.892784271 0.915615067 0.899322448 0.930675059 0.903366767 0.928951113 0.871541659 0.905053819 0.914284787 0.886497557 0.875411621 0.928366184 0.891651897 0.905212113 0.915895309 0.860979492 0.949412248 0.940322436 372280857 catechol_b Oceanicola sp. S124 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola; 0.930574005 0.932870149 0.882002837 0.913820001 0.936394082 0.957311202 0.874624639 0.901416923 0.876125715 0.932735408 0.87211055 0.921528315 0.948117531 0.906657069 0.900535329 0.914389685 0.935127738 0.924460144 345639621 merb Streptomyces zinciresistens K42 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces zinciresistens; 0.823592762 1.05992109 0.82928896 1.022666199 0.942318364 0.879027552 0.94561767 0.942819457 0.784041228 0.933546901 0.931817811 0.795677708 0.865654406 0.89635483 386847319 cmci Actinoplanes sp. SE50/110 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes; 1.122002267 1.114927645 1.114377983 1.112124926 1.071383487 1.11609379 1.093450575 1.111592861 1.095102897 1.096059836 1.098939449 1.099925149 1.067494925 1.065795932 1.026521427 1.065272581 1.108437791 1.120334829 159124816 pec_Cdeg Aspergillus fumigatus A1163 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Aspergillus fumigatus; 1.344508454 1.309764517 1.313841837 1.324911047 1.279546248 1.307558288 1.282525633 1.303353495 1.314517386 1.32255051 1.31207643 1.33848253 1.254682382 1.223745363 1.251207276 1.295249635 1.297358456 1.274178601 299797471 terc Amycolatopsis mediterranei U32 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 0.890291391 0.896425229 0.841712702 0.853562365 0.87796151 0.916136842 0.888353469 0.84703247 0.879356845 0.92591613 0.840320587 0.860511305 0.859381728 0.795898265 0.796309898 0.821230597 0.857465033 0.911916683 254469214 nosz Pseudovibrio sp. JE062 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 1.075798024 1.057190692 1.072374547 1.065934142 1.019782731 1.114341769 1.038283569 1.053800526 1.046207541 1.016799704 1.026056547 1.026292873 0.978316549 0.965156249 0.998241008 0.982396463 1.077623712 1.047545388 269811707 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.945564368 0.882289876 1.005696351 1.044332541 1.011993945 0.987877154 1.012681385 1.007895101 1.036498542 1.006788205 1.002980623 1.000466202 0.958050544 0.964173788 0.911216338 0.976278692 0.969017372 0.944801472 116742196 endochitinase Listeria welshimeri serovar 6b str. SLCC5334 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Listeriaceae;genus:Listeria;species:Listeria welshimeri; 1.15557046 0.946982222 0.941872661 0.956616315 0.911325347 0.895207573 0.925155974 0.950260287 0.94506543 0.916689618 0.993669266 0.991272655 0.900194555 0.856374795 0.883213685 0.904407836 0.907156999 0.913500774 340764447 amoa uncultured archaeon Nitrogen Nitrification NA superkingdom:Archaea; 1.112256107 1.15665921 1.073533798 1.120313117 1.044844495 1.102811548 1.064356845 1.05912979 1.085460596 1.089390937 1.068197647 1.06464842 1.018515373 1.06362942 0.985022704 1.037465752 1.110352727 1.11934986 254818817 cdh Mycobacterium intracellulare ATCC 13950 Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium intracellulare; 1.101479266 1.053077683 1.062634076 1.098369494 1.029058159 1.077395532 0.998331164 1.052797222 1.060905163 1.043174865 1.038621859 1.065979681 1.038069116 0.997609147 1.054021828 1.055324501 1.095001283 1.06452081 89902702 terc Rhodoferax ferrireducens T118 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Albidiferax;species:Albidiferax ferrireducens; 0.905601912 0.885627049 0.816705035 0.870394106 0.893622843 0.883582601 0.908418664 0.898454346 0.88469177 0.833566872 0.803673724 0.831036225 0.825724892 0.900640958 0.933570871 187438868 nitrate_reductase Emiliania huxleyi Nitrogen N Assimilation NA superkingdom:Eukaryota;order:Isochrysidales;family:Noelaerhabdaceae;genus:Emiliania; 1.286538747 1.299379323 1.252624916 1.262310393 1.248631324 1.28375869 1.23490298 1.231333112 1.244559802 1.239831161 1.254827461 1.260118445 1.243939094 1.22155601 1.203391718 1.249831435 1.273744218 1.249020679 62131458 ppk uncultured bacterium Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria; 0.77050255 0.777975671 0.808780529 0.778375446 0.801334853 0.803650056 0.863029597 0.838859204 0.799559611 0.818765534 0.812692692 0.813549021 0.828911592 329302398 ara Streptomyces griseoaurantiacus M045 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseoaurantiacus; 1.10329759 1.050246441 1.045813633 1.082479799 1.026970276 1.06000365 0.990983328 1.027029057 1.072549804 1.052190937 1.023855534 1.02700511 1.005497001 1.031360823 0.990542054 1.016888692 1.073257497 1.057421136 116748908 amyA Syntrophobacter fumaroxidans MPOB Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophobacteraceae;genus:Syntrophobacter;species:Syntrophobacter fumaroxidans; 0.787657081 0.803685335 0.805551936 0.784129612 0.786396999 0.815933291 183178983 phenol_oxidase Trametes hirsuta Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Trametes; 0.913808252 0.866365293 0.913103065 0.848478831 0.923781461 0.899545926 0.873146879 0.796050798 0.903169523 0.882178077 0.875915457 0.864009258 0.834709535 0.835296843 0.829684556 0.910456974 0.899108928 238582297 nitrate_reductase Moniliophthora perniciosa FA553 Nitrogen N Assimilation NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Marasmiaceae;genus:Moniliophthora;species:Moniliophthora perniciosa; 1.058083616 0.989881241 0.986462399 1.057496353 0.931485604 0.993568507 1.007973098 1.036779092 1.003587679 0.991886703 0.957432121 1.002661496 0.956150347 0.936803303 0.916073249 0.974261089 1.022662706 0.960730646 13425442 terc Caulobacter crescentus CB15 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter vibrioides; 1.323113155 1.288714512 1.279803681 1.268688722 1.256104442 1.295578863 1.246972155 1.271387741 1.255388274 1.261064782 1.263324417 1.278002985 1.247158949 1.215893082 1.251013844 1.248514156 1.286653697 1.266131382 161502395 CsoS1_CcmK "Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980" Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 1.223921145 1.124797941 1.179399268 1.203758103 1.153720179 1.226785931 1.189799707 1.179030547 1.20594332 1.182655623 1.181535105 1.151232926 1.17132692 1.166391847 1.170896977 1.184615123 1.241990504 1.190358736 289528936 fthfs Thermoanaerobacter italicus Ab9 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Thermoanaerobacter;species:Thermoanaerobacter italicus; 0.862456608 0.816037906 0.84433312 0.83299754 0.839800399 0.769578359 0.820161835 142202 catechol Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 1.142182758 1.038062154 1.06866274 1.071028392 1.029982068 1.037266628 1.01900708 1.047859456 1.102733841 1.050627998 1.054027005 1.060822223 1.040742051 1.019919863 1.01418059 1.059239157 1.066521927 1.02961614 296114551 PRI Gluconacetobacter hansenii ATCC 23769 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter hansenii; 0.930676182 0.918767939 0.950727306 0.940526809 0.924723851 0.973062604 0.963549814 0.913673132 0.95435067 0.929643738 1.032131673 0.942381851 0.885230027 0.92843758 0.886835917 0.849704593 0.921027726 0.950069736 379705167 cellobiase Streptococcus infantarius subsp. infantarius CJ18 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus infantarius; 0.89436482 0.86674269 0.81966446 0.87278811 0.894786966 0.868555952 0.866543977 0.85707929 0.88687621 0.911750303 0.858586403 0.854299671 0.825751271 0.86498578 0.820358244 0.910279927 0.862916994 0.939086789 119487144 rgh Neosartorya fischeri NRRL 181 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 1.087116391 1.042982993 1.052279289 1.076042664 1.05091251 1.044122635 1.028265475 1.034691937 1.037240151 0.987122384 0.954522069 1.001171328 0.99079667 0.99383279 0.94732217 0.976430173 1.071473008 1.071751422 145243674 p450aro Aspergillus niger Organic Remediation Aromatics polycyclic aromatics superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 0.827221438 0.833819285 0.815419554 0.812718424 0.792056682 0.817056478 0.80891641 0.821350029 0.798135807 0.780178843 0.812945469 37726795 dsrB Desulfobacca acetoxidans Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophaceae;genus:Desulfobacca; 0.819489852 0.795557746 296127952 terc Cellulomonas flavigena DSM 20109 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas;species:Cellulomonas flavigena; 1.165767466 1.133627465 1.14238296 1.146005109 1.12873821 1.156317938 1.129059927 1.159160048 1.134910071 1.125940659 1.139020563 1.143068233 1.099524588 1.094203275 1.054978003 1.121376423 1.143082028 1.135396591 193222992 TIM Cupriavidus taiwanensis LMG 19424 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus taiwanensis; 0.946504075 0.932589362 0.856018624 0.959172711 0.844002602 0.904236569 0.914075226 0.898837353 0.917079278 0.984471167 1.053790958 0.979712917 0.842887881 0.854473972 0.845488409 0.847338978 0.935733252 0.939557388 222084400 phn Agrobacterium radiobacter K84 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 0.937998842 0.953826195 0.834383679 0.892128732 0.87347838 0.92025223 0.883891274 0.861841241 0.875658613 0.860150079 0.829471528 0.874588668 0.842757594 0.83160384 0.867567397 0.905080745 0.895029658 109456276 TIM Roseobacter denitrificans OCh 114 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter denitrificans; 0.824477913 0.804279748 0.796472669 0.835202656 0.82843733 0.82246748 0.936090974 0.832273122 0.779014576 0.837570545 269979645 fthfs uncultured rumen bacterium Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria; 0.945968562 0.850088913 0.860997113 0.896595408 0.851753418 0.883724129 0.941293104 0.920419082 0.836928775 0.846479231 0.83158694 0.88536243 0.861272626 0.790944801 0.869603938 0.880666473 388430239 B_lactamase_A Rhodanobacter sp. 115 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Rhodanobacter; 1.016555604 0.999472838 0.996718707 1.036126332 0.961877934 0.972921124 0.983570144 0.937334391 1.005491522 0.921374279 0.982259778 0.957063366 0.900679964 0.932206211 0.91509738 0.936820929 1.027320092 0.982783192 289698330 mannanase Streptomyces lividans TK24 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces lividans; 1.039512885 1.024653173 0.965100661 1.021374103 0.987667793 1.030658004 0.990500935 0.985125468 1.006281937 1.028688244 0.989218755 1.007731131 0.996746339 0.968173983 0.974707341 0.983092292 1.032125883 1.004011256 326414223 vana Polymorphum gilvum SL003B-26A1 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;species:Polymorphum gilvum; 0.775055508 0.806457051 0.806585965 0.81207393 0.804560334 0.817433033 0.799483455 0.838771258 0.803921925 0.830826733 186459891 amyA bacterium Ellin514 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobia subdivision 3;genus:Pedosphaera;species:Pedosphaera parvula; 0.815684449 0.79503558 0.806180402 0.856566952 0.855273832 0.817504355 0.854494146 0.852339729 0.842759527 0.861249246 0.805010459 0.879839871 0.816699468 0.820661568 0.797699602 0.858573851 0.837706916 0.833399283 353200717 ppx Mesorhizobium australicum WSM2073 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium australicum; 0.803360277 0.813043877 0.80614046 0.79073081 0.829698439 0.828844749 0.865120139 170775628 TIM Leptothrix cholodnii SP-6 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Leptothrix;species:Leptothrix cholodnii; 0.83014893 0.87554244 0.875606768 0.888110679 0.85493437 0.878758854 0.914874635 0.890179263 0.847420744 0.852125375 0.841147239 0.808526022 0.877056243 0.839894619 260161877 amyA Streptomyces sp. J-13-3 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 0.795643572 0.851998607 0.807029063 0.808418843 0.798442868 0.833025336 12001884 nifh uncultured bacterium NR1626 Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 1.006195183 0.978219445 0.992228015 0.995481783 1.003599236 1.012431148 1.016657296 0.998472219 0.993879459 0.971518849 1.015073364 0.980125926 0.978858066 0.918202002 0.935104312 0.937924619 0.977566874 0.963859051 83317002 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.075955797 0.974103152 1.015032575 1.042967472 1.057221994 1.041397187 1.057408937 1.069744444 0.999894781 1.027789585 1.027205759 1.030435863 0.984204389 0.968300852 0.948696771 0.987034553 1.043157438 0.985380569 189193483 cutinase Pyrenophora tritici-repentis Pt-1C-BFP Carbon Cycling Carbon degradation Cutin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 1.341915614 1.282143051 1.290617866 1.251605035 1.264261571 1.276390514 1.244944676 1.297780808 1.272376251 1.243459525 1.288407242 1.260384512 1.224827944 1.225267688 1.19893481 1.2610716 1.25476942 1.264113128 91787734 cmci Polaromonas sp. JS666 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 1.049072856 1.060655392 1.022278097 1.055217743 1.057961272 1.090632648 1.037883147 0.988968945 1.054656789 1.018532872 1.03580269 1.026110536 1.014120432 0.994065767 1.005693513 0.993624416 1.061823764 1.101908764 158138745 napa uncultured bacterium Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria; 1.154860017 1.115354212 1.158669466 1.114799729 1.077036807 1.120352477 1.093645198 1.124323563 1.183709372 1.113784383 1.094136272 1.10183639 1.079783423 1.080595353 1.050892847 1.07769603 1.145500182 1.155536677 284046285 chnb Conexibacter woesei DSM 14684 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Solirubrobacterales;family:Conexibacteraceae;genus:Conexibacter;species:Conexibacter woesei; 0.94589243 0.959389539 0.852409576 0.962267651 0.866983776 0.919266449 0.835718157 0.849016042 0.92206677 0.911710144 0.904149966 0.87033478 0.849708552 0.896587671 0.870288591 0.940299182 0.928038859 114543369 FBPase Roseovarius sp. HTCC2601 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pelagibaca;species:Pelagibaca bermudensis; 0.977426185 0.904250545 0.871507367 0.913566595 0.862801322 0.893569074 0.846087239 0.881356311 0.824258457 0.789945601 0.82806978 0.877989754 0.871644636 355542192 amyA Mesorhizobium amorphae CCNWGS0123 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium amorphae; 0.919386938 0.935051964 0.878977735 0.950808176 0.880641075 0.882469441 0.936341353 0.944550632 0.917280481 0.864971761 0.926332526 0.849073783 0.825610726 0.883939173 0.907207244 0.952848994 357590453 alkb Corynebacterium nuruki S6-4 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium nuruki; 1.172299985 1.109380921 1.116094633 1.189362842 1.142445763 1.14918913 1.103810064 1.140560572 1.149421806 1.105130551 1.099150673 1.126620116 1.124713425 1.101692613 1.090488872 1.123834591 1.194512752 1.125291655 256831437 glucoamylase Jonesia denitrificans DSM 20603 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Jonesiaceae;genus:Jonesia;species:Jonesia denitrificans; 1.132236507 1.065118034 1.088707289 1.138226885 1.113683337 1.128287324 1.077267808 1.103029378 1.133597106 1.099301856 1.070477132 1.10136273 1.075325543 1.028195993 0.985438877 1.079011889 1.151349095 1.115155034 507854 nifh uncultured nitrogen-fixing bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 1.007474332 0.988258258 1.008228646 1.017976523 0.999681824 0.998335054 1.007499109 1.018199399 1.008081469 0.998149892 1.011027016 0.995842359 1.003934174 0.950923393 0.977109327 0.963733262 1.01477968 0.959844551 296091591 pectinase (pectate_lyase) Thermobispora bispora DSM 43833 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Thermobispora;species:Thermobispora bispora; 0.927121717 0.961271918 0.944300252 1.193996041 0.958883059 0.945153342 0.900728327 0.938547552 0.963039929 0.915931381 0.897118709 0.947542522 0.935588037 0.931924126 0.910814802 0.906031944 0.927564788 0.934956744 227377281 ara Kribbella flavida DSM 17836 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Kribbella;species:Kribbella flavida; 0.902990341 0.885981175 0.91545135 0.921336724 0.901261201 0.90499865 0.926361647 0.899470531 0.927498634 0.881192143 0.89798768 0.906964496 0.838555281 0.809424596 0.83671978 0.848928473 0.925660566 0.844091739 83647104 norb Hahella chejuensis KCTC 2396 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Hahellaceae;genus:Hahella;species:Hahella chejuensis; 1.180532875 1.134655043 1.190951658 1.227565515 1.186453542 1.190348615 1.202235303 1.217174501 1.209853976 1.171168293 1.198929826 1.226595724 1.171064549 1.182519239 1.188011166 1.187038992 1.187138416 1.12997185 154159572 tktA Xanthobacter autotrophicus Py2 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 1.463360563 1.445488455 1.45610502 1.437769202 1.438710102 1.460300306 1.440826902 1.457173609 1.448283013 1.460250679 1.442348271 1.485194737 1.41365673 1.420719402 1.436589269 1.439642663 1.442945114 1.449732609 21111333 hbh Xanthomonas campestris pv. campestris str. ATCC 33913 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas campestris; 1.107807662 1.117457595 1.007006893 1.065863088 1.036547826 1.098374138 1.063958528 1.039724269 1.041221138 1.041727737 1.082324423 1.062891516 1.026442877 1.047645647 1.026229207 1.0617191 1.079653223 1.04977792 383281740 amoa uncultured crenarchaeote Nitrogen Nitrification NA superkingdom:Archaea;phylum:Crenarchaeota; 0.814124748 0.886530728 0.850638196 0.807401207 0.855163952 0.826174522 0.819578512 0.803348184 409392330 one_ring_12diox Gordonia rubripertincta NBRC 101908 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia rubripertincta; 0.933796555 0.952680045 0.962181833 1.005095626 0.988069045 0.970927191 0.936210124 0.959969694 0.982845677 0.953713746 0.91656982 0.964258938 0.961422283 0.978501006 1.058992087 0.923519848 1.018971666 0.964779566 290955946 mdlc Streptomyces scabiei 87.22 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces scabiei; 1.160805408 1.170340775 1.144563226 1.128458426 1.087327853 1.153021983 1.068742201 1.085227632 1.114780899 1.103715519 1.115548563 1.087422163 1.12065477 1.101157669 1.052909464 1.076307934 1.148404406 1.14850232 239937650 endoglucanase Aeromonas sp. YS3 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas; 0.910783729 0.952006198 0.899644436 0.963790738 0.927444543 0.901514236 0.856642026 0.894865675 0.872276489 0.953460135 0.938687213 0.973072385 0.942389196 0.906081603 0.86583906 0.915784253 0.863017998 0.977471982 262396242 endochitinase Vibrio sp. Ex25 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 0.856093847 0.784969082 0.796196636 0.834108654 0.788552838 0.834519183 0.848529375 0.852647879 0.806781148 0.866275682 0.876201875 126659614 phn Cyanothece sp. CCY0110 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 1.031577262 1.026770157 1.029659433 1.045908556 0.987384953 1.014481957 0.959182527 0.963674177 1.015921446 0.976066521 0.993724311 0.984300019 0.968317693 0.964642435 0.934632478 0.919959783 1.024260859 1.003506253 359419822 cutinase Gordonia araii NBRC 100433 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia araii; 0.991668415 1.019803835 0.899481387 0.868791604 0.86170732 0.919105518 0.882519422 0.896211174 0.867876095 0.868990085 0.890817687 0.886342587 0.946870467 0.979396305 88798833 amyA Reinekea sp. MED297 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Reinekea;species:Reinekea blandensis; 1.202921199 1.216863832 1.206444862 1.20539115 1.175799937 1.194641702 1.163377756 1.160026669 1.20370028 1.200473112 1.204607154 1.204652892 1.147550537 1.155502081 1.124866615 1.156295715 1.165778651 1.177850489 253688555 pectinase (pectate_lyase) Pectobacterium carotovorum subsp. carotovorum PC1 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium carotovorum; 0.997885804 0.94019041 0.952387134 0.966494685 0.961205306 0.957458817 0.965590172 0.99121503 0.941970301 0.948959018 0.949771495 0.903007773 0.907146943 0.864585179 0.857233019 0.882680601 0.94306005 0.949177659 177842570 xylanase Opitutus terrae PB90-1 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 0.964859743 0.904370921 0.908633957 0.944283961 0.962868356 0.960170504 0.960057215 0.972681405 0.908664363 0.904562962 0.91916844 0.928986976 0.849407023 0.9484635 0.886148081 0.920358781 0.960579874 385737140 cmci Bradyrhizobium sp. WSM1253 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 1.197344504 1.183949557 1.206725304 1.19461322 1.203946986 1.204226937 1.191937227 1.188475735 1.19524205 1.203891784 1.203478455 1.214241556 1.174861262 1.152771923 1.153754797 1.177695176 1.193209193 1.185837008 330971447 nhh Pseudomonas syringae pv. aceris str. M302273 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae; 0.834856439 0.807419441 85671267 alkb Roseovarius sp. 217 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 0.808630982 0.820883946 126459282 por_DiC4HB Pyrobaculum calidifontis JCM 11548 Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum calidifontis; 1.335382925 1.309593049 1.330735378 1.326071427 1.330202316 1.347857943 1.344295296 1.347931799 1.329493547 1.321907773 1.347995202 1.351062171 1.294261019 1.26151816 1.305629838 1.305771943 1.294574174 1.305842062 383333885 bphc Mycobacterium xenopi RIVM700367 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium xenopi; 0.778872744 0.792769328 73539976 mhpa Ralstonia eutropha JMP134 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 1.0839379 1.098095012 1.07212967 1.068706197 1.030856681 1.113373727 1.074155584 1.021587086 1.057524348 1.092376431 1.054997465 1.030291865 1.012980575 1.055138647 0.957567364 1.058979737 1.084834824 1.095511299 392402672 amyA Turneriella parva DSM 21527 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Leptospiraceae;genus:Turneriella;species:Turneriella parva; 0.955236542 0.874165607 0.900483837 0.970385733 0.874450125 0.860814407 0.906138842 0.931678563 0.91979864 0.881756074 0.866478252 0.913361866 0.838065674 0.819157324 0.830303486 0.923458482 0.876184534 385739652 ben_bcla Bradyrhizobium sp. WSM1253 virulence NA NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.945585886 0.934982519 0.909032355 1.015690358 0.961650589 0.896370319 0.917879765 0.964597651 0.971969947 0.933769058 0.944067808 0.994626481 0.911655741 0.940703388 0.876850915 0.866071351 0.926854786 0.923234496 112463089 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.817140627 0.825001018 0.856733916 0.864706408 0.840957975 0.831435007 0.829090404 0.826409304 0.801202695 0.807570896 0.85452524 0.814620233 0.818929473 0.808950714 0.853420421 0.844909331 359819516 mdlc Mycobacterium rhodesiae NBB3 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 0.877522886 0.861164061 0.797681427 0.85841501 0.82660091 0.853828946 0.840251041 0.820353314 0.825401898 0.858134702 0.802117465 0.858986898 0.826767228 0.818137512 323358528 ara Microbacterium testaceum StLB037 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Microbacterium;species:Microbacterium testaceum; 1.147129664 1.134692069 1.149678963 1.13830268 1.120009081 1.150987068 1.133486429 1.127063864 1.132733757 1.116400423 1.123909423 1.10512574 1.108280391 1.093095287 1.07991686 1.07648254 1.143961113 1.113076981 220911638 amyA Arthrobacter chlorophenolicus A6 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 1.038103305 1.026975624 1.038638935 1.071304295 1.026410245 1.044186181 1.016941743 1.072136349 1.046611027 1.043487255 1.022590882 1.081842009 1.018067403 1.018406036 0.9811158 1.008422973 1.02148907 1.009332314 313836694 amyA Propionibacterium acnes HL037PA2 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium;species:Propionibacterium acnes; 0.92768758 0.915158617 0.89438608 0.893346141 0.86823017 0.924450159 0.861112911 0.935544871 0.917888912 0.881103601 0.804346729 0.832430331 0.869562475 0.868678166 0.89987495 83972356 nosz uncultured alpha proteobacterium Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 1.276336298 1.226636757 1.238811845 1.237287226 1.245763624 1.259023442 1.208311684 1.208719144 1.207672396 1.2070072 1.192221313 1.218789834 1.225892171 1.196989698 1.22919856 1.205504053 1.292316467 1.256186055 110823938 tpha Rhodococcus sp. RHA1 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 1.131743449 1.120236688 1.131525644 1.112510579 1.081164667 1.109510317 1.072979615 1.146364407 1.076071892 1.087192575 1.068293192 1.079380355 1.062931525 1.076646592 1.0107082 1.082360369 1.121273891 1.0982054 226350055 bphF1 Rhodococcus opacus B4 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus opacus; 1.216694776 1.17588898 1.190155902 1.206606506 1.154114967 1.169205828 1.149365156 1.19006254 1.172326803 1.153335096 1.176556189 1.190069163 1.129175134 1.12497202 1.123509771 1.147220014 1.176461817 1.165542163 116610444 mer Arthrobacter sp. FB24 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 0.817871708 0.815861578 0.794893421 0.794415188 0.827542724 0.816003074 226347403 EF1a_Jakobida Jakoba bahamiensis Other Phylogenetic NA superkingdom:Eukaryota;family:Jakobidae;genus:Jakoba; 0.998883111 0.964416418 0.94630363 1.012680478 0.939252531 0.986898936 0.956638559 0.960271749 1.014005751 0.964907403 0.956071008 0.965738686 0.914189836 0.973381493 0.943873498 0.934654463 1.005624391 0.984636307 374367281 catb Cupriavidus basilensis OR16 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus basilensis; 1.018823774 0.972096263 0.98735422 0.967303572 0.999751538 0.988406248 0.961003283 0.963617734 0.995851398 0.98264235 0.981243833 1.037934954 0.927579921 0.895421111 0.896017391 0.960545312 1.005066607 0.994770062 343773866 GAPDH_Calvin Acidithiobacillus ferrivorans SS3 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus ferrivorans; 0.81558738 0.82117196 0.828601168 0.780640628 374291743 TIM Azospirillum lipoferum 4B Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum lipoferum; 1.031193169 1.04880884 1.068983165 1.038697215 0.995364805 1.018625518 0.99390807 1.030388075 1.070288864 1.011395366 1.008464103 0.99491371 0.963424197 0.999128479 0.981139588 0.981114214 1.037979015 1.058183816 372486661 arra uncultured bacterium Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 0.871387656 0.874756243 0.907546458 0.812746032 0.856743717 0.881361371 0.876287653 0.84604911 0.847836769 0.807709689 0.872392764 0.911840314 269217209 ppx Slackia exigua ATCC 700122 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Slackia;species:Slackia exigua; 0.827185738 0.812468267 0.892499986 0.804203939 0.846530577 0.836990601 0.863822997 0.845740941 0.800534207 0.865209323 0.871681455 0.885013206 0.829286773 357076096 mdlc Frankia sp. CN3 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 1.102638562 1.092986764 1.076994757 1.098044842 1.04449996 1.10037369 1.005091068 1.079170271 1.090771346 1.073547486 1.047368983 1.051908303 1.03250718 1.07127444 1.023943097 1.064411673 1.092761586 1.090315897 357940180 mdlc Burkholderia sp. YI23 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 1.025348124 1.019662132 1.020521657 1.02639044 1.025270102 1.008432864 1.021339967 1.002512362 1.006818845 1.014285488 1.005247318 1.00177389 0.962119902 0.931094952 0.912960183 0.989006136 1.052415383 0.994405927 121602602 FBPase Bartonella bacilliformis KC583 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bartonellaceae;genus:Bartonella;species:Bartonella bacilliformis; 0.931412081 0.85889006 0.936583344 0.918905382 0.845119635 0.854139351 0.826132754 0.870721775 0.936017124 0.851257086 0.876487395 0.850801436 0.850397173 0.83261445 0.838000852 0.905884048 0.88006066 307596106 amyA Vulcanisaeta distributa DSM 14429 Carbon Cycling Carbon degradation Starch superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Vulcanisaeta;species:Vulcanisaeta distributa; 0.837656273 0.828823694 0.834517306 0.823693423 0.800460976 0.843853811 39934441 soxY Rhodopseudomonas palustris CGA009 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 1.054383615 1.037816003 1.074725761 1.088767834 1.075445959 1.068307499 1.051158377 1.095573428 1.050008416 1.015761121 1.069136971 1.019329694 0.980703187 0.983377904 0.948003543 0.975428465 1.073167606 1.079045152 240247498 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.27816457 1.255172944 1.269874246 1.291018208 1.274292335 1.283420952 1.279364846 1.294308779 1.270790664 1.264871361 1.249572486 1.303046695 1.213136497 1.24813537 1.250690744 1.285736779 1.270691793 1.227078716 310830175 poba Ketogulonicigenium vulgare Y25 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ketogulonicigenium;species:Ketogulonicigenium vulgare; 1.081651034 1.026450353 1.035142205 1.074407989 0.999005745 1.051073135 1.002432805 1.013983695 1.037048362 1.04134881 1.016068844 1.037513572 0.999280838 1.001259051 0.982429964 1.015322112 1.090800982 1.033807729 86285356 nirk Rhizobium etli CFN 42 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 1.199059312 1.170101197 1.166004693 1.147599463 1.136087015 1.132353027 1.128676262 1.136522534 1.157655044 1.149632103 1.133737108 1.163600189 1.146534909 1.097835623 1.140768708 1.127467164 1.188837606 1.143962991 212678934 dmsa Providencia rustigianii DSM 4541 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia rustigianii; 0.922728095 0.804207051 0.897971481 0.765138843 58040644 TIM Gluconobacter oxydans 621H Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconobacter;species:Gluconobacter oxydans; 0.861477162 0.846587074 0.862667426 0.891329912 0.787978134 0.818130462 0.906790403 0.889480532 0.882752348 0.843165954 0.804646141 0.942703701 0.80174532 0.814142762 0.841536481 0.843558562 0.899008139 0.858706514 359306200 ara Arthrobacter globiformis NBRC 12137 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter globiformis; 0.758436389 0.802641363 0.802152733 0.806953965 269790867 mer Thermobaculum terrenum ATCC BAA-798 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;genus:Thermobaculum;species:Thermobaculum terrenum; 0.778254658 0.816862698 223585975 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.911786554 0.935521823 0.917786357 0.892147133 0.876646754 0.895711055 0.854438146 0.912562482 0.901283219 0.917514649 0.877318991 0.909670705 0.863616936 0.896197877 0.837930486 0.878085264 0.942076328 0.96247737 112463241 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.980719609 0.99939167 0.936403843 0.995575908 0.964175657 0.945396419 0.929204968 0.9327943 0.978338711 0.968294594 0.942746427 0.927541694 0.888345138 0.912625156 0.914815371 0.92478826 0.978032014 0.962677622 110833407 narg Alcanivorax borkumensis SK2 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax;species:Alcanivorax borkumensis; 0.891586655 0.901605711 0.886156855 0.916206459 0.878182402 0.922438519 0.885735187 0.894897226 0.89280291 0.943765921 0.884064278 0.913871969 0.897712015 0.903997258 0.902936252 0.905422065 0.868002528 0.882012612 332377306 fthfs uncultured bacterium Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria; 0.798119755 0.79746009 312279501 amyA Lactobacillus delbrueckii subsp. bulgaricus ND02 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus delbrueckii; 0.877121852 0.790434867 0.819269792 0.82530111 0.841981292 0.876354215 0.867867869 0.840613562 0.796986622 0.819866345 0.830489383 0.837756169 0.884927459 328544339 cmci Polymorphum gilvum SL003B-26A1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;species:Polymorphum gilvum; 1.210668252 1.158059843 1.145024478 1.172876174 1.135564449 1.180884285 1.124490869 1.140646013 1.221674863 1.150267517 1.138837262 1.146217411 1.130423577 1.156179618 1.121653737 1.144849213 1.183786852 1.136349185 383814565 arylest Serratia sp. M24T3 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia; 1.005923516 0.965209821 0.937709204 0.965969694 0.91995387 0.952010634 0.929001766 0.953175574 1.012035722 0.973930662 0.926285185 0.962726402 0.931271445 0.957282193 0.881644293 0.9067642 0.957626143 0.983492326 330836466 amyA Sphaerochaeta coccoides DSM 17374 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Sphaerochaeta;species:Sphaerochaeta coccoides; 1.252151428 0.830460393 1.035880297 0.811870172 0.818103976 0.857741127 326947332 glucoamylase Thermoproteus uzoniensis 768-20 Carbon Cycling Carbon degradation Starch superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Thermoproteus;species:Thermoproteus uzoniensis; 1.110911532 1.087802965 1.046793881 1.111532665 1.08242268 1.078497498 1.027290356 1.038650203 1.059588028 1.058933796 1.045244383 1.088683914 1.019432043 1.017083783 0.982036902 1.033912051 1.080604623 1.105836061 170745419 APS_AprB Methylobacterium radiotolerans JCM 2831 Sulfur adenylylsulfate reductase NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium radiotolerans; 0.807306629 0.807945171 333027061 endoglucanase Streptomyces sp. Tu6071 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 1.015012539 1.011666054 1.022116898 1.01754793 1.010712361 1.046052609 1.027876546 1.023457852 1.064707686 1.029167107 1.014333952 1.076206048 1.011549421 0.999799284 1.00876953 0.974670124 1.021335823 1.043192811 119481903 ara Neosartorya fischeri NRRL 181 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 1.014319077 1.05226953 1.028923774 1.080439728 1.04575513 0.989683401 1.043078326 1.026774093 1.076654467 1.015890266 0.992972865 1.0796422 1.017071615 0.963420562 0.963469349 0.987306911 1.010126372 0.98684534 257461115 mer Campylobacter gracilis RM3268 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter gracilis; 0.934694541 1.078219677 1.044962961 1.02441573 1.043914543 1.061831158 1.006024743 1.002359839 0.983317571 1.037181878 1.009320915 1.016086237 1.016974989 1.034983683 1.025135556 0.984682329 0.995168186 1.033544864 315665073 xylanase Prevotella salivae DSM 15606 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella salivae; 0.87266535 0.920619122 0.860424508 0.94349542 1.049971297 0.855148983 0.883801611 0.882381752 0.901811943 0.839453159 0.86009835 0.932225732 0.882669604 0.851375559 0.844669116 0.840301803 0.879721024 0.878882137 328809412 pectinase (pectate_lyase) Verrucosispora maris AB-18-032 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Verrucosispora;species:Verrucosispora maris; 0.936973598 0.911681571 0.964171019 0.941319988 0.874062786 0.933841216 0.864316894 0.872281548 0.927810955 0.920471153 0.910055909 0.879328857 0.898656902 0.908077115 0.883155127 0.899909273 0.940847329 0.910927906 212542195 nagg Penicillium marneffei ATCC 18224 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces marneffei; 1.085094824 1.055992149 1.01724114 1.138133747 1.011794248 1.087990709 0.984343301 1.042509565 1.084395854 1.051876874 1.044596941 1.057104352 1.001124267 1.019716018 0.967362762 1.034695099 1.104053682 1.063453829 169864346 xylanase Coprinopsis cinerea okayama7#130 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 1.196496754 1.100120377 1.155905048 1.215527684 1.136988224 1.167589509 1.143768692 1.182556591 1.162981199 1.111823681 1.142867304 1.133546618 1.10040971 1.069155061 1.088510591 1.103931497 1.209849837 1.119041418 221081731 arylest Variovorax paradoxus S110 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 1.112867256 1.08042754 1.035569935 1.065443792 1.049364656 1.100545177 1.054861555 1.047383742 1.055201985 1.118955888 0.978127633 1.062064617 1.04225774 1.058718516 1.028349142 1.077718104 1.095124337 1.106626272 296129588 amyA Cellulomonas flavigena DSM 20109 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas;species:Cellulomonas flavigena; 1.213282553 1.20778275 1.161793219 1.20859984 1.203223977 1.191058541 1.204732963 1.188123824 1.180556394 1.165595667 1.155602832 1.1875061 1.127721645 1.120936071 1.103747711 1.130377815 1.174493345 1.196382625 55978138 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.780849935 0.893083593 0.841731525 0.876338284 0.867684354 0.857558445 0.810120367 0.817927738 0.846093185 0.870963003 0.863048661 0.859404126 0.885908867 0.827440312 0.847959201 0.86330587 294340907 PRI Thiomonas sp. 3As Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Thiomonas; 0.89555502 0.874716151 0.890627601 0.877882225 0.850281766 0.834729262 0.880635991 0.843789734 0.850980064 0.888295292 0.84575045 0.882644849 0.857174812 0.847901691 0.814997218 0.916537173 0.896877208 237878224 poba Burkholderia glumae BGR1 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia glumae; 0.929225697 0.971919517 0.940975661 0.952530522 0.982796451 0.91036694 0.897018533 0.94251267 0.96583141 0.952226002 0.941484009 0.9260629 0.973443708 0.919256354 0.922331194 0.91237876 0.972300648 361054167 FBP_aldolase Sulfobacillus acidophilus DSM 10332 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XVII. Incertae Sedis;genus:Sulfobacillus;species:Sulfobacillus acidophilus; 1.195169813 1.170268415 1.231891288 1.19596474 1.26842743 1.235546813 1.203544526 1.192011163 1.223562353 1.181689258 1.199412514 1.188797716 1.157965742 1.136008121 1.219162161 1.180935352 1.183272642 1.191157096 32307927 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.946623821 0.941964292 0.860200896 0.968663294 0.851808892 0.969751253 0.843839194 0.867596823 0.96719948 0.918748104 0.864869235 0.8620983 0.800238315 0.904859178 0.822088361 0.878654982 0.97418222 0.971933167 302887096 exopolygalacturonase_fungi Nectria haematococca mpVI 77-13-4 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Nectria;species:Nectria haematococca; 1.109964293 1.084835457 1.124044634 1.100634189 1.120354157 1.118539843 1.10074035 1.095673485 1.113325187 1.13321389 1.100234011 1.120426162 1.045579246 1.196452982 1.343719944 1.05790425 1.093330668 1.128006186 398232393 pcag Pseudomonas sp. GM78 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.847282384 0.797124472 0.873702334 0.82742145 0.838140222 85815566 nirs Pseudomonas chloritidismutans Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.91458497 0.884670169 0.837832977 0.902245456 0.856916712 0.842414859 0.854543128 0.862256275 0.93799209 0.827614472 0.841554007 0.84798506 0.857961287 0.842057616 0.859245413 0.844242594 0.919074497 0.832948397 159046436 amyA Dinoroseobacter shibae DFL 12 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 0.959317648 0.926984756 0.85455169 0.957500925 0.870710235 0.919092971 0.852956782 0.936558202 0.937120543 0.899036452 0.907145118 0.834038429 0.899067525 0.903490891 0.954648998 0.923856694 343806597 amoa uncultured crenarchaeote Nitrogen Nitrification NA superkingdom:Archaea;phylum:Crenarchaeota; 1.11702667 1.147567052 1.172761124 1.127140515 1.152908506 1.15279076 1.11609007 1.120007145 1.130589474 1.135741614 1.14129431 1.160702203 1.115135433 1.135811855 1.170378205 1.142379374 1.148004035 1.146475732 83576241 arsc Rhodospirillum rubrum ATCC 11170 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum rubrum; 1.152334217 1.098123507 1.125743341 1.143263965 1.113547387 1.13980418 1.11115023 1.142820317 1.124166941 1.107150801 1.08211521 1.141298419 1.082159691 1.063212737 1.051737906 1.09855888 1.163134601 1.108583165 383761942 amyA Caldilinea aerophila DSM 14535 = NBRC 104270 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Chloroflexi;class:Caldilineae;order:Caldilineales;family:Caldilineaceae;genus:Caldilinea;species:Caldilinea aerophila; 0.959565421 0.976390542 0.989116728 1.011211187 1.007852323 1.002668629 0.976653839 0.973716609 0.991344838 0.9947313 0.961255265 0.979292364 0.997520142 0.939795018 0.978190153 0.975876656 0.982026684 0.97699098 37925731 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 1.209487379 1.154898 1.160327242 1.184900095 1.158581362 1.189399786 1.162694714 1.208642871 1.174053185 1.180651363 1.15934298 1.169723402 1.148412194 1.192323806 1.182501406 1.172169739 1.185190556 1.14706717 32308033 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.808500777 0.84486946 0.877832673 0.878665346 0.833526868 0.793782292 0.837380186 0.790741154 27377920 nasa Bradyrhizobium japonicum USDA 110 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium diazoefficiens; 0.916940283 0.909421765 0.868721372 0.914667246 0.832461826 0.896815864 0.852740255 0.911369586 0.901366085 0.873201962 0.818426189 0.868872225 0.786523867 0.851848789 0.869143907 0.866429363 0.837437083 151423609 frdA_rTCA Sulfurovum sp. NBC37-1 Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;genus:Sulfurovum; 0.864511743 0.81307251 0.876894637 0.864886708 0.849656769 0.81454567 0.82179819 0.858642714 0.868989177 0.85645219 0.859852787 0.844113162 0.806921825 0.867856072 0.854213388 323366214 nifh uncultured microorganism Nitrogen Nitrogen fixation NA 1.090483916 1.06444653 1.09020219 1.072159726 1.092026099 1.089774898 1.095034242 1.091904285 1.096637472 1.068249759 1.080437178 1.095790325 1.090496836 1.032672785 1.092985955 1.049036037 1.088085819 1.044030367 297626259 amyA Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium;species:Propionibacterium freudenreichii; 0.794641334 0.805547571 0.812771186 0.823343001 0.818966176 0.844181337 154159343 phn Xanthobacter autotrophicus Py2 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 0.844460145 0.831266089 0.832008019 0.843278815 0.819792193 0.820514232 0.812883274 239991132 chitinase Streptomyces roseosporus NRRL 11379 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces filamentosus; 0.910571642 0.945079415 0.905727617 0.89094241 0.905508461 0.928652635 0.925487081 0.923010412 0.944539184 0.899279241 0.864639808 0.882596039 0.779320755 0.861054651 0.807420575 0.858762202 0.877800078 0.882506998 146407249 soxY Bradyrhizobium sp. BTAi1 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 1.097199899 1.094223837 1.085803987 1.105716689 1.032555009 1.094417666 1.038449979 1.095064067 1.087546606 1.077139154 1.071900886 1.073437827 1.029718501 1.07501143 1.046820376 1.058017948 1.09317073 1.100912355 384090500 amyA Paenibacillus mucilaginosus K02 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 1.526949002 1.423756199 1.437565588 1.461046981 1.413476293 1.44135647 1.41151464 1.410562839 1.432860763 1.407647384 1.409295523 1.431039607 1.403873444 1.365737971 1.396602656 1.395899325 1.447652035 1.378978086 302549256 xylanase Streptomyces viridochromogenes DSM 40736 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces viridochromogenes; 1.488537921 1.459233998 1.433795242 1.445329564 1.419133088 1.47718587 1.416135447 1.447803811 1.415688958 1.414981668 1.424789987 1.423548071 1.401315481 1.401080625 1.385005753 1.414932835 1.467494495 1.435114511 75993811 arra uncultured bacterium Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 0.890804829 0.86295193 0.818819251 0.866274825 0.877044877 0.829694621 0.882639333 0.912916402 0.938724137 0.850961003 0.850813994 0.858728768 0.85846078 0.819928599 238696602 amyA Yersinia kristensenii ATCC 33638 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia kristensenii; 1.189665632 1.180471639 1.162865735 1.191228678 1.171139179 1.182766724 1.160802788 1.172289815 1.18462444 1.168672838 1.191725911 1.175399427 1.159210834 1.203512389 1.157185676 1.153194555 1.165596414 1.156236153 341925988 chitinase Chitiniphilus shinanonensis Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Chitiniphilus; 0.821777987 0.788894854 0.777431148 0.821858903 328544476 catechol_b Polymorphum gilvum SL003B-26A1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;species:Polymorphum gilvum; 1.329090295 1.32749042 1.283909524 1.297051777 1.266544717 1.313946759 1.255318241 1.273875725 1.268286897 1.27844263 1.284404504 1.289748488 1.242008355 1.258131235 1.244130213 1.261292379 1.311723926 1.281742689 338775267 fthfs Brevibacillus laterosporus LMG 15441 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Brevibacillus;species:Brevibacillus laterosporus; 1.128847683 1.04200999 1.057315373 1.078498775 1.072377509 1.047658632 1.07690891 1.073814652 1.09064548 1.078073784 1.051484408 1.093352202 1.042098574 1.025407993 1.003057172 1.039123423 1.070241696 1.026134142 169156887 amyA Clavibacter michiganensis subsp. sepedonicus Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Clavibacter;species:Clavibacter michiganensis; 0.962885201 0.945344078 0.917864863 0.929683746 0.884064799 0.939805646 0.881942143 0.856964264 0.887638958 0.914448156 0.906339591 0.944032298 0.943954331 0.924121529 0.864448849 0.890232109 0.906714493 0.94768201 294874444 actin_Perkinsea Perkinsus marinus ATCC 50983 Other Phylogenetic NA superkingdom:Eukaryota;order:Perkinsida;family:Perkinsidae;genus:Perkinsus;species:Perkinsus marinus; 1.452057667 1.398628802 1.392677775 1.408715928 1.402496816 1.397006857 1.362201489 1.390112756 1.387092094 1.376988594 1.383909235 1.401193508 1.364631642 1.35680413 1.364594118 1.356649621 1.387918251 1.375982317 18034231 aps_apra Desulfarculus baarsii DSM 2075 Sulfur adenylylsulfate reductase NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfarculales;family:Desulfarculaceae;genus:Desulfarculus;species:Desulfarculus baarsii; 1.005363648 1.070862036 0.974057089 0.98780573 0.994623588 1.054492933 0.994680341 0.982303622 1.025058654 0.986145532 0.959672482 1.005833737 0.952615094 0.934907356 0.947649337 1.002696656 1.010557108 1.037622021 70731217 one_ring_12diox Pseudomonas fluorescens Pf-5 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 1.084615331 1.060985686 1.084354628 1.094242292 1.116575961 1.120581706 1.101544896 1.090472827 1.088208233 1.090096671 1.113624369 1.091699511 1.07398999 1.042825663 1.045095355 1.053041151 1.088785213 1.080681102 70930941 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.867103693 0.868919463 0.894165142 0.904426601 0.881242908 0.870185969 0.857599761 0.848563022 0.820187818 0.829044575 0.857109327 0.852525846 0.838710255 0.856368629 0.824179542 0.903118292 0.886408952 262087477 cutinase Gordonia bronchialis DSM 43247 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia bronchialis; 1.351156994 1.324808024 1.29148065 1.309536212 1.291678172 1.328409455 1.301599982 1.303704543 1.317530783 1.311447018 1.286125116 1.323925114 1.27409917 1.274393425 1.24253435 1.288277255 1.311235711 1.299586253 227069637 nira uncultured archaeon Nitrogen Assimilatory N reduction NA superkingdom:Archaea; 0.898372839 0.822713292 0.775650013 0.805289977 0.825126016 0.817648641 87281225 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.870405159 0.918143892 0.8701653 0.884743589 0.846233035 0.860921811 0.861850399 0.861898928 0.865502415 0.906510316 0.855039753 0.870339452 0.888398637 0.841509263 0.882617794 0.851146385 0.893333674 385277758 mult_ring_12DiOx gamma proteobacterium BDW918 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 0.925539511 0.918464772 0.949301401 0.964334665 0.975159557 0.945707455 0.956968387 0.941555935 0.9629451 0.936139861 0.944516457 0.948901243 0.922052813 0.882428737 0.935064681 0.909781033 0.914252653 0.923873246 323384760 tktA Burkholderia sp. CCGE1001 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 0.777299955 0.832339902 0.796396002 0.816965348 0.847309521 0.785069078 297630358 terc Xenorhabdus nematophila ATCC 19061 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Xenorhabdus;species:Xenorhabdus nematophila; 0.811930708 0.830415793 0.820564014 358458441 proO Frankia sp. CN3 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 0.943201026 0.884381328 0.937034274 0.922441913 0.924906079 0.920686683 0.942603653 0.914904862 0.925680387 0.910375734 0.855588847 0.87757544 0.889817055 0.893794903 0.845181434 0.873679213 0.905037254 0.929814507 398803502 linb Polaromonas sp. CF318 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 1.176492311 1.181219079 1.154036403 1.132000182 1.178293779 1.175320201 1.171961685 1.184336071 1.141115964 1.158106611 1.175678763 1.150473994 1.163625563 1.140564418 1.162197538 1.167574212 1.150992453 1.175738544 153962904 sqr uncultured bacterium Sulfur Sulfide Oxidation NA superkingdom:Bacteria; 0.821517957 0.82080907 384929017 merb Burkholderia sp. SJ98 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 0.943488899 0.935337486 0.982252117 0.993090693 0.942257447 0.92668589 0.951229206 0.95543171 0.979355366 0.912961131 0.908850056 0.919889618 0.912116402 0.869174537 0.901282106 0.838324458 0.940629495 1.033288801 357426032 exaa(moxf) Azospirillum lipoferum 4B Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum lipoferum; 0.823045599 0.800215546 0.8037325 0.786018475 0.806608845 237625007 bend Thauera sp. MZ1T Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Thauera; 1.051803701 0.993980422 1.021155423 1.038394035 1.003904642 1.033827774 1.019873635 1.014505961 1.007740732 0.985090094 0.974427234 0.989041453 0.9938881 0.972462103 0.911512036 0.938932366 1.027821469 1.010491668 222354274 hao uncultured bacterium Nitrogen Nitrification NA superkingdom:Bacteria; 0.953465936 0.940777387 0.922157117 0.931183526 0.977812978 0.922230972 0.926900119 0.913266441 0.960179693 0.979289684 1.001048347 0.988767861 0.93213405 0.925008111 0.863072008 0.941281122 0.951343562 0.957557904 39648361 nifh Rhodopseudomonas palustris CGA009 Nitrogen Nitrogen fixation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 1.069109979 1.044762012 1.051512255 1.040015306 1.059283081 1.03810646 1.045880927 1.043019541 1.038971697 1.045632822 1.020278613 1.027280704 1.002057052 0.99166228 0.996090639 1.006253377 1.05534086 1.033645554 78358305 CsoS1_CcmK Desulfovibrio alaskensis G20 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio alaskensis; 0.886208824 0.857269332 0.901237333 0.81210159 0.81159652 0.84134909 0.912611304 0.879581061 0.867253802 0.861590793 0.846991244 0.838508069 0.848040944 0.878046564 0.860382702 383210682 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.00805817 0.90165976 1.005069669 0.956433168 0.922525247 0.958561456 0.947459515 0.894236606 0.956065687 0.948503446 1.016360575 0.981240545 0.917406519 0.957407536 0.977792802 0.954776343 0.915864478 0.922547774 393719774 amyA Sphingomonas echinoides ATCC 14820 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas echinoides; 0.940674832 0.925080196 0.907678482 0.950209924 0.893935928 0.896322564 0.908331548 0.935368667 0.95529308 0.940080503 0.936601336 0.947573026 0.881569655 0.866615545 0.818100701 0.89896569 0.963974347 0.939630665 94263148 mer delta proteobacterium MLMS-1 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 1.108134357 1.111729021 1.111926962 1.110669882 1.102603881 1.106553675 1.124686835 1.149008389 1.093740558 1.095694054 1.094666781 1.115589964 1.075673765 1.087452549 1.140360127 1.101157337 1.087900168 1.071710628 364569758 nfsb_2 Yokenella regensburgei ATCC 43003 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yokenella;species:Yokenella regensburgei; 0.827237679 0.818829924 0.856479298 0.809918725 0.839421188 0.844463777 0.864118048 0.81527021 0.792806442 0.786498944 0.824324421 38524269 protease_aspartate_fungi Neurospora crassa Carbon Cycling Carbon degradation protein superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Neurospora; 0.861410296 1.01932397 1.011906732 0.854419066 0.901589119 0.948370265 0.914047391 0.828264547 0.806165854 1.032504818 0.940488193 0.90425416 0.91687168 1.064619228 0.94052159 0.98330406 0.933608558 0.902781525 33668161 endochitinase Streptomyces griseobrunneus Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 1.023581438 1.035605903 0.987231539 1.044868412 1.004632561 1.015810717 0.998274149 1.023831969 1.011063533 1.017468783 0.972835727 1.025319007 0.994837054 0.991741367 0.921508558 0.973131903 1.039505046 1.023327715 84386131 acetylglucosaminidase Vibrio splendidus 12B01 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio splendidus; 0.900075375 0.853135406 0.863692375 0.857165329 0.850320758 0.84973612 0.83404049 0.820954774 0.86270303 0.797011106 0.857131054 0.822592859 0.843923716 0.835246191 0.849849371 0.865150348 118472931 cdh Mycobacterium smegmatis str. MC2 155 Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 1.054776877 1.054715523 1.055659054 1.035594133 1.032893969 1.060425265 1.010727326 1.019320277 1.012647053 1.029919137 1.031375676 1.003223554 0.98311721 1.004081137 0.938516004 0.989575593 1.031989196 1.057045428 77973096 urec Yersinia frederiksenii ATCC 33641 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia frederiksenii; 0.815216122 0.861743084 0.906719359 0.923448457 0.901523162 0.889176447 0.906456175 0.860842203 0.883893875 0.875491798 0.886582763 0.912414233 0.885033056 0.833218951 0.881112041 0.867606421 0.895907851 0.878969826 344345296 dehh109 Marichromatium purpuratum 984 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Marichromatium;species:Marichromatium purpuratum; 0.849352502 0.904174991 0.898838243 0.88534641 0.815366209 0.82471525 0.824021876 0.911783991 0.846067438 0.868804927 0.906342219 227502820 amyA Corynebacterium accolens ATCC 49725 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium accolens; 0.889047924 0.935563741 0.931762224 0.972029843 0.947017769 0.976981533 0.929349572 0.918258881 0.881402382 0.924563148 1.007649077 0.939105017 0.954139205 0.910086722 0.929182448 0.955206788 0.959542914 0.926859493 114227804 tktA Alkalilimnicola ehrlichii MLHE-1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Alkalilimnicola;species:Alkalilimnicola ehrlichii; 1.14708222 1.227032475 1.145013641 1.124485868 1.128982716 1.159207771 1.120389312 1.130188945 1.113981146 1.152585335 1.125039934 1.154228184 1.095798429 1.117854177 1.084047033 1.124893066 1.158712887 1.161964777 330686454 cysI Staphylococcus epidermidis VCU121 Sulfur Other NA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Staphylococcus;species:Staphylococcus warneri; 0.834770505 0.889972621 0.904759828 0.916957876 0.918870823 0.857525969 0.838854798 0.916806726 0.864587126 0.84391052 0.855089392 0.886769952 0.859204574 0.86109238 0.850116598 0.826681113 0.857489339 358029139 mer Pseudoalteromonas sp. BSi20311 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas; 1.058216132 1.040756111 0.978294552 1.036847715 1.005456801 1.084971856 1.040735705 0.973249809 1.020894105 1.04944795 1.023300425 1.03703676 0.996141728 1.045882943 1.039820177 0.993080558 1.049681876 1.032995042 226284896 ara Paracoccidioides brasiliensis Pb01 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;genus:Paracoccidioides;species:Paracoccidioides brasiliensis; 0.943599002 0.995907256 0.961332343 0.925772308 0.898409676 0.937817263 0.876516742 0.846497861 0.946073843 0.922761159 0.928247632 0.903153981 0.912561276 0.923515181 0.848419239 0.882748235 0.963865877 0.931906041 237718620 amyA Bacteroides sp. 2_2_4 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides; 0.788559158 0.821385035 0.781184126 0.847034849 0.818016909 0.781705304 0.829669029 0.798145003 0.811046193 45386197 narg unidentified bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.763705133 0.806726261 283811139 cellobiase Kribbella flavida DSM 17836 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Kribbella;species:Kribbella flavida; 1.012396112 1.01835411 0.991841677 0.984450533 0.966014453 0.988577927 0.913293435 0.95145689 0.970514947 0.970826367 0.959486653 0.955370849 0.897559449 0.981066388 0.869119534 0.925712323 0.988032515 1.051660838 218714076 lactase_fungi Talaromyces stipitatus ATCC 10500 Carbon Cycling Carbon degradation Lactose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 0.802006767 0.817222819 300723063 nitrilase Xenorhabdus nematophila ATCC 19061 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Xenorhabdus;species:Xenorhabdus nematophila; 1.100680615 1.09185935 1.076082185 1.158621235 1.009369678 1.015214402 0.976871435 1.047375639 1.088638628 1.056462232 1.033435043 1.049913487 1.012463154 1.018480859 0.995308402 0.989044222 1.109194686 1.076939787 291419131 fthfs Oribacterium sp. oral taxon 078 str. F0262 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Oribacterium;species:Oribacterium sp. oral taxon 078; 0.897321777 0.845716394 0.883897605 0.960376598 0.922447147 0.879473318 0.908160185 0.896026432 0.90203741 0.879976849 0.904197956 0.910457585 0.859993653 0.864639098 0.828276718 0.79566783 0.863817343 0.864548469 387591192 ppx Bacillus methanolicus MGA3 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus methanolicus; 0.992108297 0.88665223 0.910717401 0.991685011 0.918009113 0.943859297 0.997238968 1.024600965 0.992622385 0.917891584 0.896057766 0.955507743 0.919147702 0.929712061 0.93581198 0.904448034 0.964211083 0.870092755 86740858 phn Frankia sp. CcI3 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 0.925530392 0.977305542 0.99638007 0.98754432 0.939179434 0.962022233 0.959852015 0.964122736 0.940601818 1.001484993 0.995183877 1.005497848 0.888178001 0.948071115 0.881797348 0.912555708 1.013547781 0.940100619 146339300 CsoS2 Bradyrhizobium sp. ORS 278 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 1.021210167 1.000833713 0.984521302 0.985909379 0.955809093 0.979782119 0.928639294 0.965920909 0.968724291 0.974199773 0.94837077 0.967079606 0.955226763 0.97061028 0.952771743 1.001329407 0.975737194 0.994649174 157804769 aps_apra Thiobacillus thioparus Sulfur adenylylsulfate reductase NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus; 0.907976467 0.963400917 0.868352558 0.931443691 0.910879604 0.924176672 0.864084719 0.880961039 0.869123662 0.911861345 0.862652541 0.856697366 0.909389558 0.881413688 0.864974732 0.884235032 0.935514683 0.942154219 114332096 terc Nitrosomonas eutropha C91 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas;species:Nitrosomonas eutropha; 0.93709892 0.999652863 0.884796472 0.911026795 0.917191668 0.934987774 0.895815165 0.89592801 0.902230827 0.923752502 0.878432974 0.928660328 0.922406502 0.890602679 0.827011966 0.878648704 0.917311796 0.962626796 162707986 catechol Burkholderia sp. DNT Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 1.19364896 1.161879163 1.16901296 1.181568708 1.166404038 1.195691699 1.17320601 1.168592486 1.163446518 1.179609328 1.131892029 1.180025511 1.127397359 1.121510233 1.093248959 1.153824211 1.18511521 1.17553166 219729318 pectinase (pectate_lyase) Pseudomonas marginalis Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 1.17084684 1.073977829 1.077984279 1.130166209 1.089285347 1.12946297 1.082272416 1.113200703 1.112814294 1.058945307 1.101419349 1.120799209 1.058422453 1.052352348 1.074295877 1.088573474 1.132322761 1.0637215 77362680 catechol Rhodococcus sp. AN-22 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 0.94996991 0.875340384 0.924156451 0.973143333 0.94336683 0.887086127 0.949385379 0.930640193 0.942284376 0.91677443 0.888721567 0.891589725 0.889982328 0.877465141 0.818027234 0.8478644 0.959410232 0.926861404 41325302 poba Corynebacterium glutamicum ATCC 13032 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium glutamicum; 1.170363606 1.070505519 0.995600773 1.135631806 1.015657734 1.046494724 1.131342116 1.040938462 1.038904663 0.996555507 1.017424642 1.044748733 1.041623462 1.067154091 1.028113084 1.075333688 1.054519882 1.038736102 365285805 amyA Bradyrhizobium sp. ORS 375 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.789105888 0.775648767 0.818622733 0.819112545 0.784124977 0.821011308 212686596 ppk Providencia alcalifaciens DSM 30120 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia alcalifaciens; 0.896302169 0.907566927 0.874412976 0.881690213 0.808389311 0.879655499 0.828733327 0.864083172 0.866278815 0.86179463 0.819743719 0.829677316 0.871232008 0.824728516 0.82462238 0.898331061 0.93480153 403205260 catechol_b Gordonia rhizosphera NBRC 16068 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia rhizosphera; 1.107962909 1.137941437 1.103165695 1.122999245 1.093549754 1.156788524 1.075896125 1.098018034 1.119607829 1.121780933 1.097162517 1.095842022 1.105754732 1.113203838 1.031293105 1.088071665 1.119358597 1.132051182 110835322 ppx Alcanivorax borkumensis SK2 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax;species:Alcanivorax borkumensis; 0.926403019 0.902775104 0.877003339 0.93512856 0.911844249 0.904007838 0.868132378 0.925971721 0.949737047 0.89240298 0.846929556 0.891004254 0.860791373 0.901154764 0.887268225 0.873430264 0.95107265 0.916097061 259456554 FBPase Dechloromonas aromatica RCB Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Dechloromonas;species:Dechloromonas aromatica; 1.114814314 1.131876857 1.050906122 1.078282696 1.062014025 1.105915815 1.067460876 1.03041925 1.060069603 1.092513997 1.071998316 1.063627372 1.0446432 1.049803743 0.994686797 1.061465703 1.074357882 1.105227686 91788100 mer Polaromonas sp. JS666 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 1.204237723 1.202038585 1.185768749 1.212198128 1.172343081 1.208120029 1.178929185 1.187012754 1.193560372 1.194026326 1.173526053 1.206558528 1.15045175 1.151303368 1.141347368 1.174016979 1.18544097 1.190656805 238871173 endoglucanase Edwardsiella ictaluri 93-146 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Edwardsiella;species:Edwardsiella ictaluri; 0.911563036 0.844595183 0.926968804 0.933641227 0.905059812 0.915782639 0.898020075 0.918966734 0.884851909 0.898779857 0.816477217 0.927997391 0.835590244 0.915801983 0.900280089 0.873766843 0.92299767 0.911619728 83636151 endochitinase Hahella chejuensis KCTC 2396 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Hahellaceae;genus:Hahella;species:Hahella chejuensis; 0.935524954 0.94206805 0.898762153 0.942668662 0.979052503 0.818216708 0.881896166 0.971880096 1.054820115 0.842651937 1.051611299 0.907485023 0.88148466 0.918284245 91683347 beta_agarase Rhodopseudomonas palustris BisB5 Carbon Cycling Carbon degradation Agar superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 1.011288824 1.035307874 1.002184121 1.029899105 1.007616634 1.050023954 1.019397409 1.010806996 1.007122287 1.017787891 1.006813925 1.015943293 0.993577879 1.00030797 0.964598841 1.000757343 1.002675053 1.063011383 296023114 amyA Cellulomonas flavigena DSM 20109 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas;species:Cellulomonas flavigena; 0.990927127 1.134111591 1.015700092 1.037901145 1.042573337 1.103855752 0.990899407 0.980203679 0.951011724 1.082020772 1.06997017 1.054523778 1.046393065 1.032253152 0.946197277 1.062121487 1.025975999 1.112142561 353673516 rgh Brenneria sp. EniD312 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Brenneria; 1.032235243 0.993229887 1.011458724 1.030950958 1.012899948 0.980607518 0.995167412 1.027967536 1.002437977 0.992678939 1.001523321 0.992340715 0.958805684 0.923093037 0.923771276 0.945500895 0.998503088 1.014684599 187736497 acetylglucosaminidase Akkermansia muciniphila ATCC BAA-835 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobiaceae;genus:Akkermansia;species:Akkermansia muciniphila; 0.920998456 0.902263296 0.937938636 0.930435049 0.926030311 0.956474534 0.950268441 0.905117982 0.896042196 0.924999988 0.907623331 0.909151642 0.908598743 0.890844985 0.862444785 0.828605363 0.891538607 0.975568273 400533989 linb Mycobacterium colombiense CECT 3035 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium colombiense; 0.866756774 0.857286085 0.856707367 0.812179673 0.820176472 0.803405051 0.834174833 0.898121374 26278818 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.036455894 1.139590734 0.999203165 1.050695506 1.044443658 1.071228668 0.979945582 1.02113072 1.006239909 1.056961279 1.01378312 1.026268287 1.014923249 1.012772444 0.987830893 1.042202014 1.032919787 1.084456536 52631740 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.754244826 0.803159949 0.777848631 0.845920986 190699411 ara Rhizobium etli CIAT 652 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 0.97809166 0.831462297 0.855276806 0.802595809 0.8319249 0.832895469 0.806338456 0.891760385 0.817782074 0.823828284 0.788401862 0.802051316 0.873835023 0.851328051 85667486 xylanase Bifidobacterium adolescentis Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium; 0.970874498 0.976366601 0.984368813 1.043702112 0.979857166 0.969978291 1.001825328 0.996599097 0.966582933 0.971308733 0.99781942 1.009365529 0.959792967 0.937061657 0.928908344 1.000409619 0.978924531 0.974188164 166862752 ppx Pseudomonas putida GB-1 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 1.082746576 1.109136204 1.05447442 1.06289248 1.061384224 1.123117358 1.072598151 1.077075655 1.07256231 1.074229194 1.072654152 1.072290507 1.020190883 1.046771793 0.987904 1.029284332 1.058108411 1.094879857 319413993 phenol_oxidase uncultured bacterium Carbon Cycling Carbon degradation Lignin superkingdom:Bacteria; 0.783303023 0.798123524 220709168 xyla Geobacillus sp. Y412MC61 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 0.760555841 0.796653677 0.801059485 0.780450458 0.781058177 0.806147689 126348664 endochitinase Streptomyces ambofaciens ATCC 23877 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces ambofaciens; 1.219298582 1.176561961 1.202932862 1.175583828 1.157921441 1.183875392 1.114855629 1.148399508 1.173032009 1.186614392 1.193557209 1.191924472 1.172726712 1.162493167 1.143770758 1.148646702 1.189575762 1.175324214 116695854 ben_bcla Ralstonia eutropha H16 virulence NA NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 0.83193431 0.826510835 0.859283068 0.813520595 0.821675206 0.849186376 0.83665493 0.821390879 0.824362283 0.846049294 146406052 tfdb Bradyrhizobium sp. BTAi1 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.916807677 0.807442373 0.860432403 0.913668078 0.858838465 0.843770725 0.889101215 0.935719484 0.941540142 0.884317 0.845470221 0.911703896 0.828518192 0.81607371 0.788662551 0.929844785 0.877264069 386772567 amyA Brachybacterium paraconglomeratum LC44 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dermabacteraceae;genus:Brachybacterium;species:Brachybacterium paraconglomeratum; 1.024288489 1.108463744 0.981760789 1.046271589 1.006814457 1.041816725 1.026036486 1.020250106 0.957092376 0.966335955 0.97691175 0.992892423 0.927001317 0.959384693 0.886812778 0.940535263 1.003482704 1.025234912 291454240 amyA Streptomyces albus J1074 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces albus; 0.826271038 0.837068281 0.909600126 0.835175631 0.830821229 0.85394445 0.891561753 320451158 SoxC Thermus scotoductus SA-01 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus;species:Thermus scotoductus; 0.821470983 0.864212003 0.813035629 0.841452179 0.88776929 0.793275638 0.876258329 0.881702453 0.817392358 0.800905521 0.824007389 0.816456701 0.848971878 0.83181373 0.798400397 0.804685789 111068244 rgl Phaeosphaeria nodorum SN15 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Phaeosphaeriaceae;genus:Parastagonospora;species:Parastagonospora nodorum; 0.812508991 0.839247257 0.823401379 0.847140838 197315675 PRK Vibrio fischeri MJ11 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Aliivibrio;species:Aliivibrio fischeri; 0.794208256 0.84294198 0.791810154 0.807047659 0.82752715 0.843615449 0.80835301 0.794957378 0.858090132 381387385 cysJ Phycisphaera mikurensis NBRC 102666 Sulfur Reduction NA superkingdom:Bacteria;phylum:Planctomycetes;class:Phycisphaerae;order:Phycisphaerales;family:Phycisphaeraceae;genus:Phycisphaera;species:Phycisphaera mikurensis; 0.946277118 0.868010534 0.882637269 0.962765285 0.89813653 0.87820855 0.928944603 0.955600456 0.948796394 0.850512958 0.887442214 0.894093537 0.830977912 0.80470258 0.857152692 0.938824016 0.889214893 255957291 alkb uncultured bacterium Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria; 0.918565599 0.925116134 0.962534326 0.918356002 0.901177352 0.861115481 0.857602189 0.90377709 0.889108587 0.914481763 0.881607845 0.869871142 0.808802486 0.860192164 0.815453514 0.844803792 0.930109405 0.950068054 332531181 tktA Hylemonella gracilis ATCC 19624 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Hylemonella;species:Hylemonella gracilis; 0.892588901 0.984397633 0.907336992 0.928115786 0.927526407 0.980607518 0.945460052 0.924210322 0.907169173 0.949606735 0.950526898 0.946764332 0.945882678 0.906224335 0.912860457 0.91062525 0.925793413 0.914922823 383330947 glucoamylase Mycobacterium phlei RIVM601174 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium phlei; 0.767022121 0.81364578 334889105 tktA Salinisphaera shabanensis E1L3A Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Salinisphaerales;family:Salinisphaeraceae;genus:Salinisphaera;species:Salinisphaera shabanensis; 1.322954637 1.283015016 1.285655007 1.305499767 1.274061119 1.305319753 1.267740071 1.302825934 1.299310964 1.267368564 1.27138909 1.296454667 1.290126478 1.257970813 1.273997302 1.287177034 1.298838382 1.257055636 254559345 SoxA Methylobacterium extorquens DM4 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium extorquens; 1.240491752 1.189715918 1.142356942 1.174787517 1.142802335 1.186327895 1.11798624 1.119829734 1.129886525 1.14863203 1.111542129 1.16022906 1.124403508 1.14068242 1.134988381 1.155228971 1.186002882 1.171252743 374702103 GAPDH_Calvin Pseudomonas sp. S9 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.799477851 0.844617315 0.830384745 0.817868609 0.830585561 0.82079983 0.801497708 0.810525608 0.806866217 0.839763745 221234290 phytase Caulobacter crescentus NA1000 Phosphorus Phytic acid hydrolysis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter vibrioides; 1.160467455 1.178710402 1.173086902 1.209196423 1.20353632 1.177483754 1.201222549 1.180634503 1.160658777 1.197358829 1.186177378 1.226454948 1.175442536 1.177730846 1.19954108 1.190752028 1.169404131 1.14016771 397718181 phn Rhizobium sp. AP16 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 1.128292033 1.154985059 1.134484776 1.132744165 1.088162793 1.123147703 1.124196437 1.128253942 1.119464925 1.179033334 1.116040131 1.17495344 1.114110792 1.156057644 1.110034405 1.117040988 1.120127555 1.142517219 295431633 vdh Caulobacter segnis ATCC 21756 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter segnis; 0.827493141 0.830926842 0.844081246 0.802560949 0.826461325 0.847846408 0.837192037 0.899203106 148555200 vana Sphingomonas wittichii RW1 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 0.767394973 0.815374405 0.844107047 0.866029621 84497846 ppx Janibacter sp. HTCC2649 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Janibacter; 0.995451583 1.030892491 1.018042991 0.992882422 0.998780547 1.030258965 1.020858988 0.950417375 0.979554091 1.002991815 0.986519132 1.019967853 1.009600521 0.994746213 0.994497805 0.982629066 0.979638568 1.003030415 339273494 cda Synechocystis sp. PCC 6803 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechocystis; 0.848560072 0.821766775 0.852392045 0.861656171 0.846442247 0.858698878 0.849793231 0.821262987 0.831087861 0.900841511 0.872757821 0.834900482 0.806768764 0.834259265 342134756 limeh Mycobacterium colombiense CECT 3035 Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium colombiense; 1.105130944 1.161498418 1.069732431 1.124470437 1.060631308 1.11946832 1.113038981 1.089226543 1.072708098 1.075265416 1.036132043 1.066501158 1.024496325 1.073780438 1.009276622 1.052913803 1.126377494 1.114291049 302478241 acetylglucosaminidase Streptomyces griseoflavus Tu4000 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseoflavus; 1.141840928 1.142187231 1.145489648 1.179320497 1.130900061 1.124164093 1.150076568 1.168798511 1.143328145 1.124223961 1.122029122 1.193418109 1.0972793 1.101931576 1.077307311 1.091794727 1.116308148 1.128429192 56294812 xylanase Aspergillus aculeatus Carbon Cycling Carbon degradation Hemicellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 0.836961013 0.828345723 0.796568366 0.804801359 0.817604019 0.798163597 0.825285316 0.783236253 0.801905158 0.863918236 324316882 cda Bacteroides salanitronis DSM 18170 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides salanitronis; 0.957319896 0.878063277 0.901773619 0.93976506 0.941544312 0.927248374 0.847503079 0.927299751 0.915434072 0.879615417 0.91991819 0.947618715 0.942946058 0.885684882 0.9246221 0.956488257 0.961559484 0.875895909 49611352 napa Erwinia carotovora subsp. atroseptica SCRI1043 Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium atrosepticum; 0.817169897 0.786142716 0.815118453 0.819349374 0.822208996 0.795122999 83026002 alkb uncultured bacterium Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria; 0.814008221 0.808060186 0.808149479 0.839526421 0.875976357 0.82115574 0.786276446 0.824632932 223692161 linb Desulfobacterium autotrophicum HRM2 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfobacterium;species:Desulfobacterium autotrophicum; 0.832482578 0.879414315 0.774879907 0.824480835 0.784957401 0.81166615 0.819587477 0.869892329 0.854393903 158108874 tfda Frankia sp. EAN1pec Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 1.019283416 1.026016622 1.042640518 1.084060027 1.052549465 1.0446792 1.078468053 1.06796773 1.077212626 1.014096111 1.026103222 1.040193315 1.041114833 0.993229215 0.985052678 1.006189771 1.041679342 0.971656713 374582751 chitinase Desulfosporosinus youngiae DSM 17734 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfosporosinus;species:Desulfosporosinus youngiae; 1.032234526 1.05090068 0.985595849 1.024459025 0.99539025 1.057049823 0.99426949 1.019860478 1.024709748 0.99859031 1.006901187 1.007034162 1.005990224 1.00213386 1.009115619 0.987762343 1.037247645 1.023957853 356667496 catechol_b Rhodococcus opacus PD630 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus opacus; 0.808993003 0.852835539 0.83553491 0.839103895 0.81151251 0.818538471 212171398 alkb Alcanivorax sp. S8-5 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax; 0.914745174 0.909251303 0.912359884 0.882961025 0.916841367 0.917513236 0.844925116 0.878586857 0.899932891 0.898425592 0.893727639 0.92175374 0.891281785 0.878013524 0.872947116 0.849416709 0.900669966 0.934222054 67522228 ara Aspergillus nidulans FGSC A4 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 0.949852581 0.931642611 0.919267636 0.920868863 0.882559676 0.89766072 0.874953802 0.918511003 0.860091007 0.910856573 0.935979458 0.834364751 0.883408659 0.853146771 0.854592965 0.893995645 0.885016376 145847410 hyaluronidase Ruminococcus torques ATCC 27756 Carbon Cycling Carbon degradation hyaluronic acid superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Blautia;species:[Ruminococcus] torques; 0.939695692 0.868144704 0.807253294 0.874856981 0.853459049 0.913184468 0.876149722 0.907321623 0.875236114 0.939952811 0.928240682 0.881684556 0.891988373 0.944230621 0.915633323 0.939690255 0.884465823 294883884 aoxb Methylobacterium sp. S47 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 1.007326863 0.927276935 0.924415843 0.821453814 0.896285375 0.904344078 0.836861446 0.899824411 0.811885871 0.891332653 0.822913162 0.888952319 0.959476473 78093550 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.979653733 1.036105409 0.974751727 0.952715826 0.975102036 1.019650507 0.937085479 0.95154432 0.964808592 1.011156788 0.956161638 0.967189465 0.938384227 0.980236338 1.000837155 0.976850893 0.991719001 1.019935822 119391523 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.022561529 1.027619337 0.979494914 1.036585949 0.959032914 0.972953166 0.97590029 1.020997649 1.042676916 1.012522419 0.975570154 1.010287073 0.950960282 0.956839 0.974699496 0.952913153 1.010838387 0.992976751 323274777 ara Microbacterium testaceum StLB037 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Microbacterium;species:Microbacterium testaceum; 1.115281383 1.10290453 1.075496621 1.078988085 1.069557904 1.08862683 1.037164481 1.087994563 1.073771297 1.063299674 1.05556166 1.062446099 1.022632846 1.056367234 1.016643431 1.046957227 1.072931158 1.083432258 296845696 amyA Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Nocardiopsis;species:Nocardiopsis dassonvillei; 1.229354476 1.222644339 1.179329467 1.20116549 1.198957489 1.219317891 1.194701186 1.195065308 1.19129297 1.174479696 1.193430343 1.194145491 1.186139494 1.184066552 1.178666616 1.19202098 1.218877196 1.190499578 353192815 cutinase Mycobacterium rhodesiae JS60 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 1.173032926 1.195752612 1.14223075 1.154755278 1.143781578 1.190637523 1.094456879 1.142685712 1.153794608 1.160131296 1.122449435 1.194287585 1.112941728 1.118387202 1.077597749 1.127702644 1.154939141 1.150521737 302895821 pec_Cdeg Nectria haematococca mpVI 77-13-4 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Nectria;species:Nectria haematococca; 1.005756764 0.93056905 1.005537363 0.967693889 1.006138866 1.02576106 0.982242549 0.988667614 0.977146862 1.038214401 1.028596327 0.985386347 0.973987862 1.005255713 0.994789037 0.987479276 1.019495734 0.974919627 328545246 mer Polymorphum gilvum SL003B-26A1 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;species:Polymorphum gilvum; 1.283470424 1.218334086 1.241007403 1.23532423 1.195659662 1.196297882 1.128970673 1.175548513 1.24803657 1.218775117 1.217457871 1.217633797 1.209828214 1.174831957 1.160253558 1.173819488 1.245147862 1.205632099 323364940 nifh uncultured microorganism Nitrogen Nitrogen fixation NA 0.814248822 0.793634442 118473311 amyA Mycobacterium smegmatis str. MC2 155 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 0.897820923 0.907202944 0.87328537 0.927408255 0.807116435 0.901550365 0.813390087 0.862281097 0.909229024 0.843249072 0.859619131 0.863692792 0.826687098 0.820659486 0.823871923 0.922249952 0.911681789 257486120 urec Pseudomonas syringae pv. tabaci ATCC 11528 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas amygdali; 1.383049951 1.327850989 1.344396507 1.380826484 1.337181263 1.322327649 1.287560839 1.332678944 1.354118452 1.324558084 1.320790463 1.353497961 1.298848432 1.292093046 1.251100932 1.289071011 1.343312892 1.314291032 91795187 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.958848433 0.919753574 0.915439526 0.931668311 0.95557512 0.956459523 0.960113829 0.965072208 0.954783149 0.904402049 0.946168713 0.946380901 0.898943405 0.873724958 0.900534729 0.901354301 0.971799017 0.971445305 269469112 soxY uncultured SUP05 cluster bacterium Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales; 0.876380732 0.941965756 0.914716844 0.969479582 0.917178425 0.909028684 0.89579069 0.88749069 0.83482589 0.878443521 0.879650407 0.922841345 0.88350851 0.886265721 0.889073547 0.876724715 0.920202339 0.946261451 223937280 acetylglucosaminidase bacterium Ellin514 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobia subdivision 3;genus:Pedosphaera;species:Pedosphaera parvula; 0.833913736 0.893951065 0.847074802 0.820840766 0.794074569 0.80787714 0.808697516 0.836604805 0.870901121 90655584 CsoS2 uncultured marine type-A Synechococcus GOM 4P21 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 0.930358428 0.912005941 0.836999543 0.932157893 0.827174691 0.940948295 0.892016673 0.919279108 0.921997479 0.844549606 0.833373431 0.914163418 0.781382116 0.85289383 0.912699666 0.922231612 26984389 endochitinase Aeromonas punctata Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas; 0.921626165 0.946878528 0.961586694 0.990293424 0.955074284 0.952694845 0.95571366 0.923792089 0.960258747 0.992534115 0.975215378 1.015806301 0.910162002 0.937471651 0.845986381 0.925708552 0.957392466 0.93587193 118151833 one_ring_23diox uncultured bacterium Organic Remediation Aromatics Other aromatics superkingdom:Bacteria; 1.331073719 1.320671703 1.26972711 1.26188034 1.26421667 1.331521846 1.252017086 1.23349842 1.269423013 1.290537108 1.261572621 1.291130914 1.252789119 1.247278467 1.22924479 1.30625392 1.312020553 1.29019477 346644325 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.434701787 1.385788577 1.400863203 1.409477526 1.362200964 1.421212723 1.36095486 1.404455394 1.378051661 1.376704245 1.375411604 1.393174041 1.352390693 1.355395383 1.353320166 1.39079093 1.404476268 1.356624074 213692848 ara Bifidobacterium longum subsp. infantis ATCC 15697 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium longum; 1.074027975 1.110661233 1.048156318 1.07601822 1.065126763 1.078897049 1.02412552 1.023106367 1.057394277 1.033818586 1.051547167 1.040908569 1.052440387 1.020983462 1.022088785 1.024141668 1.092353214 1.070916623 294508351 amyA Salinibacter ruber M8 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;order:Bacteroidetes Order II. Incertae sedis;family:Rhodothermaceae;genus:Salinibacter;species:Salinibacter ruber; 0.979046847 1.009233586 0.988895241 1.063011252 0.993207495 1.010148229 0.963930254 1.022104657 0.983446048 0.995040828 0.969355111 1.076502961 0.981181151 0.945840666 0.960000172 1.014911067 1.024843435 1.011477557 209501667 mdlc Burkholderia sp. H160 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 0.97714617 0.953917373 0.921174272 0.941323947 0.900083722 0.95767184 0.898418683 0.937320736 0.970892536 0.951838581 0.953558572 0.934649825 0.929126084 0.908953302 0.845336308 0.891975952 0.980159012 0.969394609 60475994 rubisco uncultured bacterium Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria; 0.895408152 1.006418885 0.96128413 0.972942376 0.95196809 0.999268597 0.903092356 0.92639696 0.949123922 0.971333116 0.933209395 0.937171068 0.914253379 0.922550242 1.020975304 0.933259047 0.972135867 1.013443962 88701121 atza Congregibacter litoralis KT71 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Congregibacter;species:Congregibacter litoralis; 1.041226882 1.037479948 1.058739329 1.044291432 1.025928589 1.05496002 1.045176607 1.02593555 1.019272451 1.037870512 1.024468966 1.029973117 1.007624058 0.984184301 0.956456752 1.033734943 1.034762907 1.020646916 170658341 chnb Methylobacterium radiotolerans JCM 2831 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium radiotolerans; 0.806132691 0.808914311 0.870677106 0.804445245 0.814425413 0.82180703 0.795480236 0.817248841 190891669 cysI Rhizobium etli CIAT 652 Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 0.771254758 0.815621337 147886006 phenol_oxidase uncultured bacterium Carbon Cycling Carbon degradation Lignin superkingdom:Bacteria; 0.847060551 0.832161956 0.84617281 0.939322986 0.859636581 0.890509619 0.857286137 0.816631625 0.913607281 0.867442114 0.830312343 0.863897571 0.827394331 0.878871555 0.863860005 0.944992846 0.869834357 209401916 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.18893062 1.20145908 1.209885629 1.184510826 1.189178302 1.177897088 1.164006607 1.164236628 1.136675494 1.176254163 1.133216592 1.165875793 1.170233648 1.116454364 1.158282333 1.159667902 1.179676743 1.164786377 238868031 terc Edwardsiella ictaluri 93-146 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Edwardsiella;species:Edwardsiella ictaluri; 0.777986962 0.850159719 0.841271593 0.801658944 0.823750948 0.858826295 290962205 cutinase Streptomyces scabiei 87.22 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces scabiei; 1.279511798 1.223814816 1.19772494 1.256810319 1.184795349 1.237251415 1.199517207 1.302719966 1.292757558 1.179818618 1.185936783 1.218430591 1.190856841 1.21194926 1.15550587 1.210151805 1.269885568 1.21518969 390947174 amyA Alistipes finegoldii DSM 17242 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Rikenellaceae;genus:Alistipes;species:Alistipes finegoldii; 1.179817303 1.172120314 1.164182144 1.167828065 1.161274164 1.189350363 1.137650756 1.147160989 1.113053323 1.133968115 1.132616034 1.1431178 1.12811949 1.114000909 1.076242069 1.122416878 1.177325424 1.136794146 153893454 cellobiase Opitutaceae bacterium TAV2 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 0.852585837 0.819560285 0.881483681 0.864281969 0.811421537 0.796119842 0.821641348 0.866918922 0.846717853 0.83062259 0.899148552 0.902886089 304391669 TIM Ahrensia sp. R2A130 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ahrensia; 1.08828609 1.119427654 1.069532327 1.053292164 1.240111225 1.093439069 1.035890313 1.037646004 1.00365636 1.078538435 1.038594256 1.30738649 1.038299628 1.101880708 1.029075119 1.052775492 1.088463123 1.095126342 258603161 fthfs Corynebacterium jeikeium ATCC 43734 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium jeikeium; 0.972949342 0.989782226 0.976152295 0.999302534 0.994671336 0.96970349 0.991487944 0.944831016 1.014291032 0.953411294 0.962514562 0.970928325 0.913473419 0.94193757 0.894000693 0.906994927 0.987503078 1.001041566 34850706 Glucose_oxidase_fungi Penicillium variabile Carbon Cycling Carbon degradation glucose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium; 1.130044201 1.086620328 1.04818112 1.110749505 1.100597826 1.1108979 1.12368734 1.081295411 1.088241431 1.114970172 1.021707878 1.083810275 1.044919625 1.049510597 0.952338754 1.043873923 1.082978034 1.081304366 271966431 linb Streptosporangium roseum DSM 43021 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 0.886892208 0.888038776 0.918561539 0.867187567 0.880533321 0.861610435 0.901202728 0.873198017 0.870867929 0.882380644 0.879169317 0.820048085 0.856249192 0.848826017 0.847316195 0.911991541 0.913477019 363416334 B_lactamase_A Acidovorax sp. NO-1 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 1.060708043 1.056681236 1.016455139 1.065732189 0.953108005 1.056708213 0.978014853 1.023229811 1.052413746 1.033091195 0.994094713 1.004507404 0.937213755 0.999164699 0.983719869 1.002683542 1.062342399 1.090135034 17548359 pme Ralstonia solanacearum GMI1000 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 1.277766253 1.202049441 1.226633452 1.275803236 1.200973368 1.247903415 1.208410301 1.215489446 1.212607229 1.207136255 1.201227022 1.22726615 1.171357741 1.180655985 1.179909338 1.209007515 1.228305441 1.210064831 21106432 hbh Xanthomonas axonopodis pv. citri str. 306 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas citri; 1.317946115 1.286803932 1.294317903 1.291288288 1.243798178 1.29322234 1.26436231 1.26130041 1.268881598 1.279711426 1.253593471 1.275668065 1.237693515 1.251893874 1.218001971 1.236707865 1.297990306 1.290571605 256641769 acetylglucosaminidase Acetobacter pasteurianus IFO 3283-22 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acetobacter;species:Acetobacter pasteurianus; 0.998713812 0.942907757 0.993284874 0.9937022 0.977098374 0.952748794 0.984364184 1.02999633 0.982203611 0.957853708 0.968545203 0.953235996 0.956488562 0.89807391 0.891032151 0.881831202 0.972040104 78065843 phdk Burkholderia sp. 383 Organic Remediation Polycyclic aromatics NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 0.91674279 1.051600376 0.852876491 0.993964229 0.986262051 0.940673305 0.997349052 0.973192902 0.988086434 0.951800831 0.969951435 0.923000379 0.976804367 1.000559933 0.895899498 0.928600969 0.991338042 197333185 amyA Streptomyces sp. Mg1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 0.962192546 0.989116767 0.951095478 0.94137884 0.912669633 0.942043296 0.867854852 0.943654795 0.958318238 0.956175917 0.884591641 0.923017812 0.885864804 0.934766647 0.8245773 0.90136953 0.955903816 1.003858376 190688462 xylanase Cellvibrio japonicus Ueda107 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio;species:Cellvibrio japonicus; 1.177131791 1.162501106 1.231714098 1.181507457 1.198670498 1.207163584 1.258976313 1.15467437 1.173737171 1.237274471 1.228275635 1.210854094 1.208714213 1.166339973 1.106087618 1.150649763 1.164494767 1.142796817 192897530 ppk uncultured bacterium Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria; 0.894371194 0.839243628 0.894233014 0.890383473 0.835835338 0.837846128 0.894261098 0.900466441 0.831874546 0.848390234 0.893395841 0.791057694 0.8148805 0.830622081 0.895772793 0.880227007 91680994 terc Rhodopseudomonas palustris BisB5 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 0.920802913 0.922849592 0.86150964 0.952492693 0.877723176 0.93634645 0.90227237 0.905136026 0.880389198 0.930709581 0.867262661 0.872004921 0.872928034 0.867273476 0.864173029 0.925920725 0.919151778 220062009 one_ring_23diox Arthrobacter sp. JDC-12 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 1.067700108 1.021798011 1.053471277 1.112026421 0.994948132 1.080200314 1.045844981 1.030642905 1.053119877 1.049199925 1.071209417 1.051601311 1.028719281 1.04145761 0.982088265 1.036958219 1.073124052 1.036817151 111279206 terc Acidovorax avenae subsp. citrulli AAC00-1 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax citrulli; 1.213740453 1.197959247 1.177031697 1.219346872 1.189879783 1.181202226 1.19244911 1.242753141 1.195701107 1.184807294 1.19697827 1.209012911 1.17137738 1.138042448 1.168391294 1.187412982 1.207567426 1.192809902 16263147 norb Sinorhizobium meliloti 1021 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium meliloti; 1.015034156 1.057355749 0.997772942 1.008069888 1.021339247 1.052614711 0.997761869 0.998427708 1.031691311 1.015503189 1.030435884 0.996131966 0.974087685 1.008485885 0.99776803 0.987585309 1.022232962 1.018689408 288347142 xylj Frankia sp. EUN1f Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 1.147640656 1.165566225 1.119537614 1.114376589 1.103592707 1.165862977 1.107188893 1.083859236 1.102097847 1.144057711 1.140186782 1.135402713 1.121591696 1.148823306 1.096763375 1.131160989 1.136363945 1.140575107 62512302 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.157593174 1.116285465 1.098228531 1.123812148 1.146741311 1.19762299 1.144655585 1.124472853 1.117080902 1.13977286 1.097288249 1.103472377 1.12433571 1.115502217 1.068183157 1.086056525 1.169427314 1.11668961 391419266 arsc Streptococcus canis FSL Z3-227 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus canis; 0.907232276 0.919058259 0.879453845 0.916353424 0.929817313 0.890936543 0.838231511 0.891700834 0.839840215 0.869441002 0.852823568 0.895375616 0.890260603 0.854614149 0.88720663 0.872848451 0.894033384 147886164 phenol_oxidase uncultured bacterium Carbon Cycling Carbon degradation Lignin superkingdom:Bacteria; 1.380494836 1.260660729 1.250962102 1.295029937 1.22882085 1.273009512 1.198770427 1.295143946 1.281530189 1.223848313 1.223639618 1.23739647 1.222936223 1.227299932 1.216748562 1.255320633 1.270777671 1.256076709 24943171 chitin_deacetylase_fungi Gongronella butleri Carbon Cycling Carbon degradation Chitin superkingdom:Eukaryota;kingdom:Fungi;order:Mucorales;family:Mucoraceae;genus:Gongronella; 1.211660089 1.226058157 1.21504428 1.24901028 1.252504876 1.242675757 1.200747186 1.191211579 1.210674666 1.198663188 1.192613051 1.212852284 1.198752481 1.151940641 1.175207953 1.174054528 1.24923933 1.169939171 99083259 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.866997378 0.856714535 0.874404451 0.790762717 0.902336145 0.833116384 0.859843887 0.82463569 0.844707832 0.838485547 42524234 nrfa Bdellovibrio bacteriovorus HD100 Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Bdellovibrionales;family:Bdellovibrionaceae;genus:Bdellovibrio;species:Bdellovibrio bacteriovorus; 1.114853846 1.088075434 1.075450331 1.159963176 1.096030598 1.111075064 1.111860505 1.100257744 1.115110148 1.089607276 1.070738443 1.100795463 1.110426066 1.074329958 1.083585053 1.08671838 1.132758463 1.065842413 88643101 dsrB uncultured prokaryote Sulfur sulfite reduction NA 0.798341642 0.833240584 0.822914128 0.80012522 0.83900228 0.807481866 0.790505977 0.808587478 0.80131602 0.824562233 0.84595674 262079184 amyA Haliangium ochraceum DSM 14365 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Haliangiaceae;genus:Haliangium;species:Haliangium ochraceum; 0.899866405 0.889290837 0.855775581 0.890531909 0.856982361 0.825251933 0.849270729 0.870620066 0.916207004 0.880555922 0.865843489 0.835848647 0.845061877 0.891074841 0.933028289 7578780 merb Streptomyces sp. CHR28 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 1.068077979 1.087093067 1.068091292 1.035969284 1.007000371 1.020231055 0.986720262 1.040020266 1.034697579 1.046605161 1.044084847 1.040314251 0.980841068 1.050242891 1.017318528 1.017992518 1.05671481 1.067315778 325964986 amyA Arthrobacter phenanthrenivorans Sphe3 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter phenanthrenivorans; 0.921901727 0.907760926 0.913023231 0.957158567 0.947277943 0.904865697 0.948333994 0.966529014 0.920511761 0.85043015 0.835822079 0.91260455 0.86280054 0.857572809 0.859569431 0.879172545 0.929239712 0.925199769 357079644 tfdb Frankia sp. CN3 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 0.96611129 0.94113152 0.91758107 0.953423548 0.854050389 0.906333943 0.866061828 0.920347839 0.936296454 0.936370148 0.909467564 0.899173128 0.868305454 0.869119602 0.837469867 0.887680185 0.953392502 0.949570408 329851655 alginase Asticcacaulis biprosthecum C19 Carbon Cycling Carbon degradation Alginate superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis biprosthecium; 1.061398565 1.032339134 1.043068394 1.042533666 1.055996969 1.062004843 1.043866165 1.052078242 1.02504847 1.040617372 1.037217476 1.02439724 1.026652249 0.974899078 0.964389081 1.000894413 1.066535921 1.053950761 255957259 alkb uncultured bacterium Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria; 1.050505488 1.0224875 1.118397692 1.035546546 1.075892939 1.055358938 1.032659332 1.029050768 1.057301463 1.083985727 1.05664253 1.046048962 1.061613218 1.068557198 1.027069691 1.006874822 1.061166429 1.031552091 92112446 pcag Chromohalobacter salexigens DSM 3043 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Chromohalobacter;species:Chromohalobacter salexigens; 0.901905795 0.882001223 0.868209323 0.957960352 0.830169012 0.896286138 0.83603365 0.928633018 0.913324072 0.907967702 0.824267347 0.892319765 0.847576026 0.908063304 0.824136914 0.860146187 0.935849541 0.914429575 28901493 pula Vibrio parahaemolyticus RIMD 2210633 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 0.951720464 0.944481427 1.042801993 0.950451684 0.996664108 0.965779584 0.979088904 0.947781947 0.956054471 0.989796079 0.985820262 0.959846256 0.957815614 0.939832348 0.882506593 0.930862197 0.95272248 0.987184109 149209717 tfth Magnaporthe grisea 70-15 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 0.957470434 0.975592448 0.943234737 0.915698048 1.002333583 0.947170774 0.898580105 0.938023876 0.946022127 0.983779775 0.923655451 1.062269309 0.962587046 0.9333396 0.929080821 0.868236849 0.961921594 307719158 ara Spirochaeta thermophila DSM 6192 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Spirochaeta;species:Spirochaeta thermophila; 0.979318101 0.994658406 0.909853172 0.99274901 0.95661635 0.975045791 0.936762843 0.952528578 0.965284894 0.969158988 0.924627688 0.954728171 0.91418695 0.957468854 0.934147642 0.978852752 0.982567343 1.023220687 119374201 tktA Paracoccus denitrificans PD1222 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 0.826378035 0.847204122 0.8629372 0.878816212 0.853278397 0.825768662 0.871352119 0.862242756 0.892028671 0.841580054 0.809083591 0.848605627 0.834960696 0.849173304 383339500 mdlc Mycobacterium phlei RIVM601174 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium phlei; 0.952927571 0.949923053 0.920557446 0.935564277 0.930944228 0.941546976 0.877743128 0.926537613 0.899372061 0.936252709 0.906060328 0.928601517 0.904081034 0.90700609 0.890269729 0.952518394 0.929051895 0.93561419 110589356 tktA Endoriftia persephone 'Hot96_1+Hot96_2' Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Endoriftia;species:Endoriftia persephone; 0.809184505 0.808597441 0.841987963 0.822461898 0.807121648 0.824743567 0.829229047 0.832285487 0.82717578 0.826839072 0.774896644 0.806647624 0.82748077 0.840953848 256688532 terc Kytococcus sedentarius DSM 20547 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dermacoccaceae;genus:Kytococcus;species:Kytococcus sedentarius; 1.034289643 1.02846781 0.995758563 1.005878808 0.951092014 1.02018502 0.973597586 1.011410206 1.002285048 1.018363714 0.970128228 1.016084955 0.949900195 1.026441984 0.968774083 0.980727382 1.013626856 1.029076904 118424527 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.837872124 0.8061946 154159591 oxdb Xanthobacter autotrophicus Py2 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 0.81079343 0.810046809 0.800038152 0.852016365 0.850928061 0.831612441 0.870119547 0.790376985 0.834980141 0.795712518 62149150 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 1.005753152 1.015385735 0.980606868 0.988463375 1.008665307 1.024206713 0.980207134 0.918914328 0.979651508 1.007507426 0.966972168 0.973070441 0.930202533 0.944688511 0.914762221 0.931911156 1.022179584 1.023426559 227213116 amyA Bifidobacterium longum subsp. infantis ATCC 55813 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium longum; 0.789507414 0.833593061 193888336 thmAB Rhodococcus sp. YYL Organic Remediation Others NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 0.767290252 0.894398712 0.838439566 0.813779503 0.781820375 0.818287949 0.800291683 0.806186757 0.83023391 0.795081122 0.800312523 340545046 one_ring_23diox Janibacter sp. TYM3221 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Janibacter; 1.123212208 1.116373882 1.057710757 1.1073761 1.070854683 1.114737957 1.099790533 1.059962923 1.083419827 1.093365093 1.129031237 1.10686555 1.090929832 1.093606273 1.05143595 1.095599519 1.098865755 1.105088428 315498983 RgaE Asticcacaulis excentricus CB 48 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis excentricus; 1.295005664 1.146614165 1.166436334 1.248968211 1.192941821 1.132584635 1.242527715 1.216647071 1.232813606 1.117307805 1.112847084 1.237854862 1.175029428 1.100532047 1.14823889 1.175002858 1.180312586 1.138060512 323359168 ppk Microbacterium testaceum StLB037 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Microbacterium;species:Microbacterium testaceum; 1.251346825 1.235010639 1.222599946 1.230589248 1.213898786 1.254745459 1.211402172 1.209104398 1.196696807 1.211230539 1.209409829 1.238052054 1.21309969 1.202112557 1.21509275 1.217883071 1.236082132 1.209086663 256370937 rubisco Acidimicrobium ferrooxidans DSM 10331 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Acidimicrobiales;family:Acidimicrobiaceae;genus:Acidimicrobium;species:Acidimicrobium ferrooxidans; 0.866210002 0.798106063 0.854268285 0.851649642 0.83055964 0.816354552 0.892730952 0.879772482 0.864067434 120406735 cutinase Mycobacterium vanbaalenii PYR-1 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 1.139806896 1.125745187 1.156279606 1.129270937 1.10211081 1.156380594 1.10737491 1.11679841 1.116135511 1.11669542 1.126189433 1.134117715 1.09778554 1.111128557 1.073418795 1.105059057 1.133868165 1.114821633 78192774 nrfa Geobacter metallireducens GS-15 Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter metallireducens; 1.044807985 1.030186537 1.013050093 0.988103343 0.988979649 1.033147471 1.010638801 1.005481352 1.00941156 0.999523314 1.00921942 1.006274908 0.993716543 1.020915394 0.984370805 1.02682215 1.034642224 1.016662792 421953142 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.769096 0.783979726 46562231 nifh Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough Nitrogen Nitrogen fixation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio vulgaris; 1.309848441 1.266272822 1.279817476 1.284032179 1.256245115 1.282293884 1.228664981 1.26673427 1.2756544 1.250310852 1.25279096 1.281238963 1.250829717 1.228314764 1.227264172 1.257064058 1.284777902 1.240421569 157804842 APS_AprB Thiorhodovibrio winogradskyi Sulfur adenylylsulfate reductase NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiorhodovibrio; 1.065101255 1.095446693 1.056730129 1.031021653 1.048611234 1.074162595 1.052249965 0.994587217 1.039041715 1.077627998 1.079815945 1.037209123 1.00548291 0.979981813 0.937969364 1.015954697 1.024872828 1.055947964 259507923 xylxy Corynebacterium efficiens YS-314 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium efficiens; 1.018406272 1.092390017 1.01679467 1.052620078 1.040752791 1.078517769 1.004395582 0.993652365 1.005788855 1.064076633 1.033092142 1.029989277 1.025893603 1.034383023 0.972568553 1.011117647 1.032549896 1.059550364 33320468 dsra Desulfovibrio halophilus Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 0.995505595 1.040267363 0.998168229 1.038118945 1.01571687 0.998056871 1.005648977 1.01671839 0.992001071 0.972367476 0.977895173 1.005860585 1.007372775 0.963357483 0.9820672 0.986431011 1.004236041 0.969598669 74038306 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.779804429 0.836741923 0.783660429 0.82986343 0.803868248 0.833506586 84388282 pgk Oceanicola batsensis HTCC2597 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola batsensis; 0.95739304 0.949390303 0.925554069 0.926372203 0.933327502 0.931216699 0.908327949 0.904655965 0.927911484 0.908382313 0.906740338 0.91968292 0.879494674 0.89822251 0.878819014 0.874638574 0.92124181 0.968362779 398131786 badh Pseudomonas sp. GM21 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.973720524 0.907109136 0.952839565 0.951973206 0.869678049 0.899463867 0.867828946 0.874499456 0.931542224 0.887453629 0.919884423 0.84679343 0.916310848 0.858769291 0.855641373 0.89085631 0.913687268 0.881193699 345001640 bphF1 Streptomyces sp. SirexAA-E Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 1.099382698 1.100857382 1.048859084 1.113559058 1.048316123 1.092624225 1.085372574 1.062589546 1.130446072 1.074609786 1.036393771 1.085764112 1.082468155 1.054586574 1.015234349 1.039138285 1.101636407 1.082199444 170733044 tktA Burkholderia cenocepacia MC0-3 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cenocepacia; 0.903255198 0.906754876 0.905399754 0.914206693 0.911385933 0.905761823 0.923055439 0.888543897 0.916374214 0.937392133 0.903113059 0.927537798 0.813506708 0.897317879 0.85728429 0.872545695 0.896909704 381168639 arsc Phaeospirillum molischianum DSM 120 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Phaeospirillum;species:Phaeospirillum molischianum; 1.021968937 0.969295928 0.954811084 0.980525878 0.959629933 0.944692533 0.904684315 0.993114113 0.9926405 0.93804512 0.915469084 0.965059057 0.937474696 0.935567706 0.921261556 0.936885353 0.996454578 1.000514823 344341482 fccab Thiocapsa marina 5811 Sulfur Sulfide Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiocapsa;species:Thiocapsa marina; 0.853056356 0.817990805 111020561 mannanase Rhodococcus jostii RHA1 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 1.236711069 1.280969828 1.197332517 1.235754802 1.204462663 1.249015536 1.211592663 1.228781006 1.232169661 1.242805418 1.175596081 1.208058571 1.206609995 1.216453582 1.170514082 1.197642366 1.309852634 1.259049297 158138907 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.973113264 0.895103416 0.911044618 0.940397723 0.890654065 0.871192065 0.901272825 0.941867496 0.890492771 0.92977061 0.914457149 0.935533568 0.86371002 0.839608266 0.845487393 0.841992664 0.94799928 0.881178732 254437872 GAPDH_Calvin Octadecabacter antarcticus 307 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 0.832839273 0.81492602 0.773544175 0.848218344 0.771270475 0.852236134 0.809523494 0.834068082 0.855263369 0.874239387 0.844175535 0.815601489 0.854347864 0.909634717 0.90317311 302550556 pectinase (pectate_lyase) Streptomyces viridochromogenes DSM 40736 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces viridochromogenes; 1.411315972 1.390881648 1.3611807 1.390953524 1.362931767 1.410446072 1.346521005 1.374862151 1.359202705 1.354403584 1.350800708 1.387123873 1.34906444 1.344177102 1.35344508 1.363248434 1.393294535 1.372647428 84778365 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.92374144 0.895529171 0.932852944 0.941790684 0.927140565 1.009992286 0.89528509 0.912391461 0.880282172 0.883615927 0.96311673 0.931506564 0.953405352 0.974777915 0.903500219 0.938521024 0.909982735 0.902318235 359780578 cysJ Pseudomonas psychrotolerans L19 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas psychrotolerans; 0.917872558 0.90811441 0.928200814 0.914441157 0.879885277 0.846634712 0.878244584 0.897158346 0.855390715 0.801289867 0.851343941 0.828592577 0.929428322 0.92397679 337730730 dsrB Candidatus Riegeria galatelae Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;genus:Candidatus Riegeria; 0.851231355 0.813956972 0.834843297 0.851169169 0.818778852 0.826806938 0.827874168 0.83292471 0.80525386 0.894477382 386433976 alkk Herbaspirillum sp. GW103 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herbaspirillum; 0.80257307 0.804769572 0.798827103 0.797442665 0.786482971 0.815694199 0.831762499 0.783021571 0.831054308 0.787535726 298554904 amyA Leifsonia xyli subsp. xyli str. CTCB07 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Leifsonia;species:Leifsonia xyli; 1.195499381 1.179321714 1.149761437 1.176533749 1.167411087 1.195446823 1.145396043 1.176090108 1.177747777 1.16404684 1.160684864 1.166436193 1.136273929 1.132823723 1.102820451 1.125278311 1.178677247 1.168040742 26278676 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.861772783 0.86117664 0.847971553 0.925761564 0.87236288 0.875537669 0.85099019 0.855179214 0.84842497 0.872114715 0.875133139 0.835737571 0.889784721 0.822033148 0.843063331 0.851438592 0.894811908 0.886580717 219666430 ccmL Desulfitobacterium hafniense DCB-2 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 0.807324101 0.906305083 0.817629478 0.807948286 0.821903866 0.892421982 0.819373776 0.823894202 0.865300665 0.85932568 0.873292853 0.895996653 358636275 dehh109 Azoarcus sp. KH32C Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 1.00438075 0.934289307 1.037375368 0.959577597 0.854053369 0.914871567 0.907104454 0.849293693 0.912969474 0.87827757 0.859996319 0.899788638 0.892573476 0.892435621 0.894388433 0.905119889 0.958009159 0.9433499 390435966 ppx Pantoea agglomerans IG1 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea;species:Pantoea agglomerans; 0.769709351 0.936149865 0.834360086 0.779294554 0.876487289 0.825711168 0.783909242 0.840526446 0.846682105 0.847114478 218324840 fthfs Vibrio splendidus LGP32 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio splendidus; 0.790167772 0.815337863 0.836607425 0.841812112 0.81939292 0.797857301 0.83268474 0.843428984 0.849344323 0.80805716 0.821540472 0.859009009 299133604 PRI Afipia sp. 1NLS2 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Afipia; 1.16060704 1.266900094 1.089541703 1.070714982 1.113797797 1.100696263 1.058686665 1.02908116 1.064985579 1.070386431 1.078172212 1.067788133 1.047940626 1.021094922 1.056532422 1.044482648 1.114367435 1.053332062 304281791 ccmL Arthrospira platensis AGB-AP02 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Arthrospira;species:Arthrospira platensis; 0.834603515 0.818256626 0.819106619 0.81225388 0.795690722 0.840332256 0.853445905 373461394 acetylglucosaminidase Prevotella maculosa OT 289 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella maculosa; 0.867915973 0.835898571 0.846942159 0.847451185 0.863435643 0.823903498 0.845250491 0.836715851 0.85583275 0.847460667 0.85626101 0.829182578 0.846759528 0.914206419 32308065 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.89340141 0.859931335 0.909381799 0.926463753 0.899401416 0.902066661 0.943259834 0.868393774 0.924727853 0.8987878 0.944736436 0.944285064 0.914533954 0.96696299 0.837788585 0.862298298 0.902978632 0.880646342 74056559 ppx Thiobacillus denitrificans ATCC 25259 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus;species:Thiobacillus denitrificans; 1.069707367 1.080805392 1.018286898 1.067966479 1.049499461 1.051960117 1.037967135 1.04684779 1.071008367 1.065978327 1.042140207 1.0463685 1.020964179 1.013864838 0.9875738 1.041607962 1.089322582 1.094602708 254444969 rgl Verrucomicrobiae bacterium DG1235 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales; 0.869167777 0.922154821 0.845079103 0.889154594 0.874906116 0.920095752 0.879918887 0.849420143 0.888808021 0.912784824 0.900662161 0.836728519 0.869442189 0.929965378 0.835193925 0.877284244 0.931985161 254475330 ben_bcla Ruegeria sp. R11 virulence NA NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 0.837274379 0.83622095 0.872852417 0.855536018 0.854580212 0.831412969 0.810172964 0.867207846 0.841932404 0.828783115 0.840585642 0.875786295 0.83428991 198404322 endoglucanase Cellulomonas flavigena Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas; 0.858321211 0.865800686 0.773186274 0.833688095 0.796786061 0.773652142 0.873923035 154362242 fthfs uncultured microorganism Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway 0.890624487 0.828341553 0.873528479 0.906587669 0.902722203 0.837921271 0.819265937 0.870534224 0.909013316 0.813197978 0.852682738 0.807075919 0.889672825 0.876496385 109290274 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.166204222 1.104365836 1.127660688 1.144047409 1.106657005 1.14447684 1.107806674 1.147574644 1.114418403 1.120024535 1.124587853 1.127664513 1.098038426 1.116425172 1.102001682 1.13565851 1.136251266 1.11873585 209486033 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.238675556 1.209012613 1.220028592 1.200179747 1.177652228 1.221424473 1.183459498 1.212069555 1.199443854 1.178055898 1.188836683 1.184057292 1.173203153 1.188001359 1.166157444 1.17967703 1.211016863 1.203616728 317506688 amyA Segniliparus rugosus ATCC BAA-974 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Segniliparaceae;genus:Segniliparus;species:Segniliparus rugosus; 0.959621992 0.962009551 0.935282029 0.945435658 0.951743586 0.929503185 0.880707257 0.940421228 0.969053777 0.937990886 0.904709647 0.940994656 1.071527115 0.910334014 0.844213409 0.837393647 0.951560968 0.974500986 296937373 one_ring_23diox Mycobacterium sp. py148 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 0.981389879 0.984980261 1.025294025 1.015912595 1.018609801 0.999033752 1.006776381 1.022444556 0.993653692 0.982302668 0.996961956 1.014843307 0.966030702 0.937249546 0.919197702 0.880391744 0.992142063 0.992064486 211906109 mcra uncultured archaeon Carbon Cycling Methane Methanogenesis superkingdom:Archaea; 0.745799552 0.788919678 0.825515 0.803606599 89950949 chitinase Saccharophagus degradans 2-40 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Saccharophagus;species:Saccharophagus degradans; 0.785770759 0.776946192 55978089 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.784777815 0.805217285 0.860218124 0.824457262 0.923493021 0.812831253 0.851795088 0.819473705 0.867629103 384153782 urec Amycolatopsis mediterranei S699 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 1.195658249 1.184418551 1.168608927 1.182586671 1.16706243 1.188914861 1.124986732 1.149517798 1.151036048 1.166066921 1.158718697 1.179729558 1.16453536 1.128030495 1.131530038 1.160461405 1.218776253 1.172031522 148653392 mdlc Psychrobacter sp. PRwf-1 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter; 0.891871733 0.823602239 0.890650156 0.917644238 0.923164253 0.835764906 0.818728931 0.811731464 0.819265971 0.84904235 328810423 bphd Verrucosispora maris AB-18-032 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Verrucosispora;species:Verrucosispora maris; 1.032783877 1.01370733 0.999899178 1.011660464 0.907191728 1.055919107 0.941810615 0.973017727 1.001540951 1.004134826 0.963092783 0.964576081 0.918206348 0.975799117 0.952581644 0.948345117 1.03649814 1.021459465 254774506 cutinase Mycobacterium avium subsp. avium ATCC 25291 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 0.929963466 0.922032676 0.923769386 0.943490656 0.966086044 0.948667508 0.981482487 0.917261878 0.930128344 0.963615291 0.929385585 0.957892523 0.959736333 0.942946197 0.935660573 0.915917566 0.950949945 225376384 pme Roseburia inulinivorans DSM 16841 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Roseburia;species:Roseburia inulinivorans; 0.771289089 0.831713173 0.801227692 0.791664722 0.816892534 0.798975554 0.780387887 0.785042384 0.871595672 120612180 urec Acidovorax avenae subsp. citrulli AAC00-1 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax citrulli; 0.881909504 0.914710368 0.867717807 0.903112439 0.810217938 0.874934227 0.849689286 0.845215127 0.892325823 0.87091946 0.834137282 0.873500551 0.883151121 0.92420155 83842013 xyla Sulfitobacter sp. NAS-14.1 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 0.890142728 0.858603904 0.87669602 0.852045857 0.918762787 0.873684493 0.921822212 0.898829812 0.884257944 0.886959351 0.911603697 0.876978656 0.871953155 0.861439784 299738671 Glucose_oxidase_fungi Coprinopsis cinerea okayama7#130 Carbon Cycling Carbon degradation glucose superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 1.024052836 1.064503781 1.049758021 1.088601729 1.108197524 1.093016781 1.03388134 1.045825322 1.033365803 1.047239106 1.031505226 1.071874801 1.051055922 0.999297497 1.044132691 1.060885669 1.071423371 1.033654772 115397177 exoglucanase Aspergillus terreus NIH2624 Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 1.045941979 1.068943151 1.035194302 1.012491781 1.029952597 1.040069442 1.026998032 1.017196711 1.047007868 1.039565847 1.054946494 1.028427941 0.989931568 1.006361371 0.964677291 1.031730912 0.968446593 1.062321311 225871735 acetylglucosaminidase Acidobacterium capsulatum ATCC 51196 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Acidobacterium;species:Acidobacterium capsulatum; 1.065950587 1.013290659 1.023441141 1.005831699 1.001812761 1.014309183 0.961401743 0.97894467 0.968422866 0.922459202 0.980371844 0.961346986 0.910972781 0.919315537 0.90202437 0.928921774 1.022739138 1.02855502 319434821 terc Dietzia cinnamea P4 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dietziaceae;genus:Dietzia;species:Dietzia cinnamea; 0.933300188 0.847157634 0.854506732 0.828707233 0.887636031 0.891898183 1.101859949 0.821337444 0.825339695 0.807807397 0.806462138 0.816784038 0.818300563 0.880696484 0.804833762 0.880077438 296426177 phenol_oxidase uncultured bacterium Carbon Cycling Carbon degradation Lignin superkingdom:Bacteria; 0.989918364 0.999033258 0.973199189 0.91151533 0.979828685 1.005033006 0.968106278 0.95277319 0.941928112 1.025108478 0.976923406 0.980083451 0.967407454 0.973151222 0.918831938 1.003387465 0.990760236 0.979423618 72121736 linc Ralstonia eutropha JMP134 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 1.233181452 1.229969184 1.258873172 1.285123291 1.249978143 1.244122003 1.243254758 1.266349735 1.247763178 1.225101633 1.250366584 1.29670021 1.237966453 1.223393292 1.237177728 1.223818423 1.228238203 1.185481478 212539350 tfda Penicillium marneffei ATCC 18224 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces marneffei; 0.787855402 0.831328927 0.804340722 0.827382 0.801501404 0.805900203 0.8280733 0.830443566 295441295 vgb Burkholderia sp. CCGE1002 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 0.85808046 0.890163801 0.8470602 0.868099716 0.848561743 0.798953251 0.848473117 0.826975679 0.858979598 0.817200069 0.822703493 0.865680588 0.882501117 74038394 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.071844014 1.012594223 0.972287759 0.937479636 1.031761661 1.047259317 1.024994985 1.012913364 0.992890835 0.996639341 1.013522258 1.045033352 1.0623693 0.952746225 0.90919175 1.033873538 1.025765519 1.060668913 164455262 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 1.082015234 1.058713519 1.060714834 1.104472075 1.005655144 1.04994304 1.033897216 1.076647875 1.084102124 1.019793134 1.016005129 1.07785513 1.027304614 0.996999117 1.014859447 1.038854317 1.111128033 1.064636988 334684073 amyA Microlunatus phosphovorus NM-1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Microlunatus;species:Microlunatus phosphovorus; 0.889371479 0.874262787 0.889433738 0.922848784 0.805267437 0.900841699 0.788166163 0.845213295 0.886374544 0.850377762 0.861214865 0.889381864 0.841438075 0.833661696 0.824513921 0.87627374 0.898621317 297163563 amyA Truepera radiovictrix DSM 17093 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Trueperaceae;genus:Truepera;species:Truepera radiovictrix; 1.099749892 1.000058939 1.075078408 1.02412031 1.045004813 1.041233541 1.043468446 1.009221805 1.029892776 1.06373102 1.053848852 1.054286289 0.992652951 1.045380032 1.01146862 1.021337546 1.050325849 1.047201402 261835498 GAPDH_Calvin Halothiobacillus neapolitanus c2 Carbon Cycling Carbon fixation Calvin cycle 0.826284318 0.783378536 0.79783781 0.813828547 0.839559391 0.851352588 0.80576646 0.84595354 0.90141946 0.864351317 0.828212616 356697676 pme Clostridium hathewayi WAL-18680 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hathewayi; 1.220396014 1.203141889 1.061725217 1.085671079 1.058962419 1.08051571 1.077155911 1.075942767 1.090392261 1.091480009 1.092497669 1.075601481 1.052512234 1.064072031 1.052920927 1.069501846 1.097881285 1.097800007 292830957 catechol_b Streptomyces sp. e14 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 1.098142179 1.102802834 1.045791245 1.094041578 1.06050684 1.097488057 1.03631439 1.043206307 1.047406577 1.044625102 1.05121537 1.052155594 1.0468211 1.038952171 1.001821827 1.063677655 1.112078664 1.060838369 296136069 mer Thiomonas intermedia K12 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Thiomonas;species:Thiomonas intermedia; 0.972438736 0.959116791 0.987994425 0.999050453 0.974630394 0.946059478 0.983675236 0.989180851 0.97171633 0.951985004 0.956034587 0.961059397 0.871563881 0.899959451 0.883967878 0.90567214 1.018097331 0.99273268 114706574 soxY Fulvimarina pelagi HTCC2506 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Fulvimarina;species:Fulvimarina pelagi; 0.87861994 0.942047688 0.923639484 0.948484973 0.959821864 0.919877949 0.855171419 0.856224936 0.89632609 0.923809862 0.839972009 0.885119242 0.912164117 0.86076345 0.848577103 0.899347836 0.915377175 0.934176337 358449557 dehh109 Marinobacter manganoxydans MnI7-9 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter manganoxydans; 0.977352904 0.929276035 0.992534879 0.970874662 1.00487761 0.966942559 0.990008458 0.979986282 0.964224117 0.963892969 0.935694148 0.952095613 0.856832145 0.870649321 0.839667828 0.929808728 0.921831214 0.973860359 114536977 TIM Fulvimarina pelagi HTCC2506 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Fulvimarina;species:Fulvimarina pelagi; 0.830395244 0.825607761 0.814107383 0.827170782 0.842455491 0.821670715 0.792565064 0.821975664 0.858010016 0.855863354 124894708 tfda Burkholderia dolosa AUO158 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia dolosa; 1.087006708 1.08486685 1.054704623 1.086469723 1.098048396 1.088828362 1.086147618 1.099253697 1.115609898 1.039564699 1.056683356 1.088532368 1.032773622 1.074309746 0.991544204 1.08221157 1.081718199 1.078584336 313155170 AcnA Sulfuricurvum kujiense DSM 16994 Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Sulfuricurvum;species:Sulfuricurvum kujiense; 0.882962158 0.882536387 0.828463511 0.837954611 0.807892589 0.857661329 0.863420422 359789508 b_lactamase Mesorhizobium alhagi CCNWXJ12-2 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium alhagi; 0.89902992 0.867183626 0.901299902 0.926387887 0.878026761 0.929937017 0.90054877 0.931735724 0.926169043 0.91166441 0.877023795 0.888515365 0.841028239 0.898769623 0.822633861 0.850717002 0.906509521 0.917994202 316255017 amyA Segniliparus rugosus ATCC BAA-974 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Segniliparaceae;genus:Segniliparus;species:Segniliparus rugosus; 0.998642111 0.989618099 0.912127318 0.980248127 0.909660888 0.950401856 0.887549338 0.952501231 0.96159438 0.982428069 0.885363916 0.959464792 0.898363052 0.945744639 0.861054493 0.887458497 0.991124439 0.997011968 6911973 acetylglucosaminidase Streptomyces coelicolor A3(2) Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 1.108363904 1.140336339 1.108976642 1.133477787 1.12164947 1.142539741 1.108805248 1.111272739 1.09089025 1.095995022 1.109842733 1.099855659 1.106461329 1.052876422 1.052145467 1.066296023 1.10069079 1.086158946 317018250 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.982065227 0.885368229 0.913017772 0.965582851 0.940663183 0.94232721 0.945743513 0.948839887 0.99568899 0.939845274 0.903498029 0.943175569 0.921342578 0.836960786 0.91879623 0.897093205 0.960300828 0.935483348 151357412 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.879004864 0.83583029 0.843613482 0.831436327 0.859266152 0.85308208 0.817860024 0.875635349 0.899147757 0.827290322 0.82077587 0.859465854 0.79522168 0.79275976 0.79559904 0.893774657 0.909686514 78513590 mdlc Bradyrhizobium sp. BTAi1 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 1.018373798 1.034234255 1.004940415 1.008431796 1.006875274 1.070222236 1.043606996 1.03585567 1.01132709 1.037208244 0.993537311 0.995648196 1.03009674 1.002952491 0.976186019 1.027770595 1.016612742 1.054022119 229494549 linb Rhodococcus erythropolis SK121 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 1.056187395 1.086136987 0.998918324 1.0413773 0.984972521 1.040749746 1.005618003 1.039385717 1.057264984 1.048858675 1.007378218 1.016522923 0.956762857 0.989490924 0.952227409 0.982895254 1.041337131 1.051038768 82946478 dehh109 Magnetospirillum magneticum AMB-1 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum magneticum; 0.865932811 0.870617943 0.846440076 0.904051699 0.861837867 0.908944904 0.840757287 0.87206241 0.850645867 0.85675146 0.843069535 0.858460106 297146693 amyA Streptomyces sviceus ATCC 29083 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 1.277453375 1.286300094 1.265475292 1.287685491 1.303148531 1.308066098 1.281071209 1.304405314 1.265170371 1.265715728 1.276384948 1.289844006 1.27473122 1.245495151 1.28051517 1.273505235 1.282921052 1.266401554 344318441 amyA Streptomyces sp. SirexAA-E Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 1.131509884 1.081401812 1.07728405 1.111497734 1.065510837 1.120676671 1.056468997 1.080461922 1.076668163 1.097951167 1.088420043 1.081175118 1.06945464 1.093654737 1.056783808 1.087670674 1.128666882 1.09383391 325478476 xyla Anaerococcus prevotii ACS-065-V-Col13 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XI. Incertae Sedis;genus:Anaerococcus;species:Anaerococcus prevotii; 0.784183414 0.872966483 0.800621641 0.813608394 0.813324255 0.827664499 0.800788871 0.797232073 0.799694517 0.832794549 221133539 tehb Glaciecola sp. HTCC2999 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Glaciecola; 0.815070675 0.89199561 0.855374594 0.849039777 0.81916674 0.832081251 0.822197428 0.80354185 0.842996747 0.845869573 260905451 fthfs Brevibacterium linens BL2 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Brevibacteriaceae;genus:Brevibacterium;species:Brevibacterium linens; 1.183302015 1.133865938 1.138714563 1.182969783 1.156601865 1.198966066 1.186459876 1.141946184 1.146360023 1.11594499 1.140665173 1.164098883 1.120075638 1.095054592 1.037580749 1.115492128 1.209582361 1.147283399 85670669 tktA Roseovarius sp. 217 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 0.863223583 0.823817527 0.816322702 0.850479637 0.8492851 0.898241777 0.795563879 0.842255439 0.870107421 0.839469498 0.815304299 0.893762301 375750947 nhh Gordonia polyisoprenivorans VH2 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia polyisoprenivorans; 1.066169654 1.049639609 1.057445407 1.096540703 1.050071289 1.076650687 0.977705399 1.032619801 1.045389178 1.03544979 1.006777805 1.111885058 0.995881948 1.061029397 1.020701678 0.991238539 1.061410423 1.070730966 169885312 tktA Synechococcus sp. PCC 7002 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 0.99018118 1.073169173 0.910571742 0.981711042 1.000169302 1.055536903 0.950364824 0.934905276 0.989622623 1.019759113 0.948663754 1.000474137 0.956106086 1.00584198 0.978775619 0.98149407 0.951005198 1.031042398 337739167 FBP_aldolase Oligotropha carboxidovorans OM5 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Oligotropha;species:Oligotropha carboxidovorans; 0.825120094 0.817982977 0.935492863 0.816685864 0.824099127 0.860941674 0.879128303 0.818058573 0.830504412 0.810978401 307586255 tktA Burkholderia sp. CCGE1003 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 1.008132361 0.968248175 0.995161593 0.979265396 1.017223514 1.034179104 1.061787358 1.032393591 1.003944433 0.986243825 1.004884063 0.99084979 1.008950248 0.964447601 0.881828961 0.942079774 0.953342387 0.957363062 349585771 mcra uncultured methanogenic archaeon Carbon Cycling Methane Methanogenesis superkingdom:Archaea;phylum:Euryarchaeota; 0.77808155 0.817725174 356880467 gdh Azospirillum brasilense Sp245 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum brasilense; 0.796654476 0.799400565 0.816596819 0.821789917 0.841145476 0.827948994 0.801965161 0.829288286 0.80845287 0.836103739 344338694 urec Thiocapsa marina 5811 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiocapsa;species:Thiocapsa marina; 0.92091085 0.887284073 0.835606525 0.873859682 0.845014317 0.850296398 0.83602398 0.888043664 0.827884735 0.881529739 0.836209664 0.847010253 0.932808294 359818447 cutinase Mycobacterium rhodesiae NBB3 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 1.228632714 1.248160021 1.223074615 1.217988295 1.23657102 1.256496164 1.209812436 1.200685634 1.193778224 1.214792397 1.207652495 1.217487756 1.246118817 1.197544428 1.198763421 1.223260262 1.247334467 1.211943181 219965748 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.292672165 1.255197558 1.29357993 1.311344225 1.288715428 1.28490863 1.286363958 1.29339803 1.290504689 1.286977735 1.281683601 1.310655926 1.244001899 1.233828016 1.254469407 1.267751163 1.286707248 1.241860322 126734307 poba Roseobacter sp. CCS2 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 0.790761213 0.799317778 0.798918927 0.814974281 0.822589659 0.8207404 1.258996124 226347401 EF1a_Jakobida Histiona aroides Other Phylogenetic NA superkingdom:Eukaryota;family:Histionidae;genus:Histiona; 0.967731052 0.936577303 0.829845531 0.942683931 0.862361374 0.903059835 0.861597919 0.808287489 0.914594009 0.914585752 0.884360686 0.895406081 0.892430441 0.953473646 0.935831747 357210390 amyA Methanosaeta harundinacea 6Ac Carbon Cycling Carbon degradation Starch superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosaetaceae;genus:Methanosaeta;species:Methanosaeta harundinacea; 0.812114344 0.823056918 315279860 amyA Paenibacillus vortex V453 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus vortex; 1.064988454 1.088798699 1.02215765 1.030190212 1.012323399 1.046645499 0.968800131 0.987930003 1.028507929 1.028972436 1.018935471 1.046991225 1.032534691 1.03967363 1.010517419 1.024221563 1.018905899 1.036248035 334136857 amyA Paenibacillus sp. HGF7 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 0.779925551 0.945493222 0.898265837 0.883528829 0.889987766 0.838256325 0.99928869 0.972394014 0.794112175 0.852437331 0.810561367 0.853848993 0.922615504 0.859732233 0.964362322 0.886116074 291612497 FBPase Sideroxydans lithotrophicus ES-1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Gallionellales;family:Gallionellaceae;genus:Sideroxydans;species:Sideroxydans lithotrophicus; 1.04816401 1.03010117 1.037679406 1.053531254 1.055057428 1.036359236 1.057084454 1.050847787 1.048368087 1.038792853 0.987303524 1.015550367 0.986094719 0.971423118 0.943158984 1.016239876 1.051527356 1.042071824 119716426 merb Nocardioides sp. JS614 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 1.098252822 1.091946076 1.050937819 1.079327625 1.047028687 1.102471949 1.042483069 1.048257477 1.065619974 1.082251758 1.044026619 1.051485994 1.039372126 1.037889852 0.992329102 1.036937404 1.082589097 1.112061062 221203711 nbac Burkholderia multivorans CGD2 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 0.898496145 0.818732828 0.860496495 0.888773048 0.838827798 0.830744013 0.890833124 0.90765664 0.825650633 0.942035216 0.855227351 0.865297613 0.840213397 108463770 ppx Myxococcus xanthus DK 1622 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus xanthus; 0.997774533 0.975280943 0.933159762 0.997610534 0.915986704 0.975684407 0.889433933 1.004597068 0.932162392 0.928468937 0.914839499 0.90579003 0.899109233 0.876498788 0.985556108 0.973025844 227487474 mer Corynebacterium glucuronolyticum ATCC 51867 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium glucuronolyticum; 1.221098392 1.053301531 1.153719803 1.166884284 1.226985007 1.210796593 1.172045398 0.947768802 1.005316521 1.207851733 1.147101159 1.157723299 1.154062088 1.204717079 1.252224849 1.153423236 1.151455329 1.155853437 193244817 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 1.38536053 1.340231339 1.35402047 1.356819496 1.358329945 1.334699391 1.317504144 1.334536935 1.349548616 1.323705313 1.338318597 1.348238423 1.326285139 1.29697789 1.322894097 1.333220343 1.351894826 1.308437019 70728595 chitinase Pseudomonas fluorescens Pf-5 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas protegens; 1.036502128 1.017467074 0.99528533 1.034890417 0.981536111 1.004215026 0.997498262 1.047172064 1.056006469 1.039309126 0.923667595 1.016631619 0.913441291 0.934724642 0.875113667 0.983185294 1.006860041 0.972784383 257055345 cmci Saccharomonospora viridis DSM 43017 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora viridis; 0.85619961 0.798784458 0.827869765 0.863140741 0.839536809 0.841855131 0.844700451 0.864094531 0.868174223 0.819008175 0.792677893 0.856569672 0.892342239 114764025 ppx Roseovarius sp. HTCC2601 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pelagibaca;species:Pelagibaca bermudensis; 1.097280413 1.084261438 1.081172326 1.086069982 1.083861298 1.091572712 1.10270152 1.055618363 1.040856601 1.135995531 1.147633035 1.106152243 1.063792434 1.060363892 1.021860926 1.036623786 1.061850945 1.085517711 30269531 nasa uncultured bacterium Nitrogen Assimilatory N reduction NA superkingdom:Bacteria; 1.053667828 1.053889002 1.088459711 1.116812151 1.090924503 1.082567432 1.062718521 1.072507163 1.03411645 1.080009357 1.058317415 1.09639425 1.047999244 1.025368719 1.045260467 1.018513896 1.013044166 1.061334318 118424352 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.888705368 0.841677847 0.883771967 0.873092462 0.860085281 0.864395651 0.810511819 0.811579337 0.853049389 0.814578069 0.829264919 0.853810581 0.816042794 0.833683369 0.903366141 0.909604752 325979734 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.849181807 0.890996902 0.808224629 0.821276984 0.850145789 0.810168536 0.771426121 0.810933911 0.811246643 0.791742841 0.90760387 119460795 arylest marine gamma proteobacterium HTCC2080 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 1.055948695 1.011763168 1.048902328 1.038384772 1.039401018 1.142829728 0.996098042 1.049447862 1.053719732 1.001545394 1.009665016 1.102335114 1.037821477 1.053531956 1.055709349 1.071042679 1.105308946 1.119769161 335865542 acetylglucosaminidase Shewanella sp. HN-41 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella; 1.418706773 1.390375853 1.408420954 1.446139537 1.406015275 1.42096557 1.401602333 1.421073504 1.429750011 1.390236438 1.421372386 1.425225984 1.367769712 1.363083344 1.38786849 1.378149968 1.394692376 1.3648374 379044663 endoglucanase Frateuria aurantia DSM 6220 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Frateuria;species:Frateuria aurantia; 0.928289632 0.882789161 0.960800669 0.906831968 1.144608853 0.948244646 0.92709194 0.86379969 0.84961205 0.930298791 0.944743359 0.93337891 0.895999264 0.903315461 0.898792255 0.907367772 0.899457784 0.92732325 126236445 mult_ring_12DiOx Mycobacterium sp. JLS Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 1.084329136 1.077159659 1.059392823 1.077799369 1.077286723 1.097518282 1.085333871 1.080721119 108765846 merb Rubrobacter xylanophilus DSM 9941 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Rubrobacterales;family:Rubrobacteraceae;genus:Rubrobacter;species:Rubrobacter xylanophilus; 0.925250332 0.839838999 0.825237269 0.82521262 0.878278791 0.817763165 0.794248246 0.863914867 323273828 amyA Microbacterium testaceum StLB037 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Microbacterium;species:Microbacterium testaceum; 0.827789393 0.81761206 0.824802168 0.903023415 0.901804127 0.887490045 0.901306323 0.904927944 0.85118267 0.830810119 0.865651699 0.856957143 0.842010292 0.816108007 0.803329778 0.812775011 0.877501881 375144308 xyla Niastella koreensis GR20-10 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;genus:Niastella;species:Niastella koreensis; 1.021937464 0.99833911 0.981197725 1.052054938 0.949093018 0.97037462 0.882346651 0.837684012 1.023642547 0.977604316 0.990879636 0.98628389 0.951681281 0.934648102 0.854842411 0.945349824 1.022747153 0.970794891 400333786 linb Mycobacterium colombiense CECT 3035 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium colombiense; 1.034046729 0.987938615 0.96841609 1.017076755 0.972010126 1.013239326 0.973799874 0.992791556 1.006479108 0.994414537 0.987890568 1.002027874 1.002929637 1.023969173 0.99119146 0.969075319 1.018615139 0.986724324 349780042 mer Thioalkalivibrio thiocyanoxidans ARh 4 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio;species:Thioalkalivibrio thiocyanoxidans; 0.976101643 0.965214882 0.946632304 0.992241118 0.936453207 0.950308205 0.952361198 0.935852822 0.913228318 0.937439319 0.936140823 0.917426233 0.977690258 0.860766952 0.893480955 0.91017697 0.938910135 0.949186385 375329256 pgk Arthrospira sp. PCC 8005 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Arthrospira; 0.960584696 0.945374734 0.97379442 1.035159077 1.002784505 0.951172931 1.019924345 1.023095243 1.038078254 1.030644658 0.996891434 1.020779775 0.97848548 0.915437779 0.943991764 0.987496225 1.016478278 0.970564486 157917577 linb Salinispora arenicola CNS-205 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora arenicola; 0.866421378 0.918203925 0.841447703 0.804216321 0.846040327 0.836130024 0.874856539 0.865113828 0.908376274 62003523 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.913190763 0.919808879 0.917231624 0.925626822 0.843335902 0.925077359 0.927278687 0.877061393 0.913262362 0.910159696 0.907965804 0.912746355 0.8113952 0.84636553 0.881743366 0.933661484 84515568 GAPDH_Calvin Loktanella vestfoldensis SKA53 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Loktanella;species:Loktanella vestfoldensis; 0.859861101 0.834462367 0.844487688 0.843359232 0.885304138 0.923326835 0.917581126 0.885243091 0.887270385 0.91912084 0.874817416 0.841141789 0.838324096 0.866955276 0.8439925 0.851666789 0.996299161 0.926048537 212171420 alkb Alcanivorax dieselolei Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax; 0.979407506 0.971500964 0.938351882 0.97783381 0.947355436 0.962744337 0.934080767 0.970423124 0.955816331 0.977876006 0.945934708 0.970568203 0.920189384 0.945960417 0.917505296 0.933279068 0.949803296 0.968165001 121596146 terc Acidovorax sp. JS42 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 0.911605212 0.893107152 0.847939781 0.931652704 0.86735119 0.931316829 0.881817069 0.870544058 0.916210679 0.876392493 0.855505009 0.90440289 0.842909816 0.858341261 0.855424396 0.915575638 0.92915757 0.892307836 89055455 arsc Jannaschia sp. CCS1 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Jannaschia; 0.888206622 0.920536557 0.920282791 0.889684873 0.817202116 0.902830282 0.812279836 0.989250099 0.918975284 0.873020842 0.864863982 0.819057851 0.773032997 0.821906851 0.852736992 0.884557009 0.922021149 407713046 nitrilase Burkholderia phenoliruptrix BR3459a Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phenoliruptrix; 0.860659613 0.846499233 0.851331817 0.817444907 0.871395045 0.852351189 0.832403942 0.789761197 0.838542178 0.856747372 0.806408113 225043073 CsoS1_CcmK Clostridium asparagiforme DSM 15981 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium asparagiforme; 1.5384921 1.49500532 1.513139717 1.52256759 1.493230198 1.508502075 1.484473665 1.540885486 1.501990292 1.488347085 1.497107261 1.529231166 1.47993899 1.46287043 1.491196979 1.510242375 1.496709197 1.469704869 37548706 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 1.044739425 1.090731614 1.041532951 1.097382898 1.097770508 1.070353523 1.091646175 1.071466684 1.047551636 1.077026871 1.071082727 1.083592115 1.071888892 1.027030036 1.077998086 1.049988641 1.060223487 1.005221788 57160549 rubisco Thermococcus kodakarensis KOD1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Thermococcus;species:Thermococcus kodakarensis; 0.993135374 0.99804313 0.854860053 1.020902068 0.978783594 1.09287849 1.037637695 0.949731387 1.0338011 1.005034259 0.943511695 0.966063572 1.025927921 0.995146675 0.965398148 1.005736931 1.020976943 1.075234369 61968001 endochitinase Lecanicillium lecanii Carbon Cycling Carbon degradation Chitin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Cordycipitaceae;genus:Torrubiella;species:Torrubiella confragosa; 0.816599803 0.84454076 0.818685781 0.81044451 0.883246889 0.823738578 0.834237294 0.819111217 0.814426727 0.814099565 0.78588563 0.819865244 0.833805539 0.786207625 0.852046125 356641484 PEPC Pyrobaculum sp. 1860 Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum; 0.874779469 0.865335877 0.885270455 0.902655485 0.831077114 0.879400521 0.861514922 0.872980323 0.870674416 0.909038454 0.835841232 0.879827626 0.849946692 0.880512393 0.836650137 0.883521431 0.89118276 0.904162359 84369762 xylanase Xanthomonas oryzae pv. oryzae MAFF 311018 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas oryzae; 1.098509732 1.061669711 1.090763818 1.095402561 1.013894241 1.085279734 1.035075218 1.035078984 1.108467269 1.050328295 1.04400151 1.045914301 1.032799034 1.044923772 1.021747283 1.014699738 1.099921049 1.049430795 317404894 pectinase (pectate_lyase) Achromobacter xylosoxidans C54 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter;species:Achromobacter xylosoxidans; 0.894904132 0.862687642 0.850349124 0.880833485 0.821121977 0.883946147 0.8154162 0.873200693 0.848489842 0.807483652 0.867681976 0.928508291 0.87704846 297626690 terc Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium;species:Propionibacterium freudenreichii; 1.16252796 1.128012457 1.140730368 1.150009 1.118003171 1.162526954 1.119297242 1.125144686 1.138997404 1.171192017 1.140506879 1.142186047 1.108898447 1.117531128 1.080733378 1.109412021 1.162673252 1.115476722 302686210 chitin_deacetylase_fungi Schizophyllum commune H4-8 Carbon Cycling Carbon degradation Chitin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 1.143959738 1.13618653 1.136126928 1.113895385 1.097447246 1.118538702 1.059294982 1.114055384 1.155465746 1.11925156 1.096087376 1.122940747 1.076882386 1.08666877 1.082508607 1.07020392 1.116446135 1.14279794 149912783 PRI Roseobacter sp. AzwK-3b Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 1.211209208 1.219765174 1.163128248 1.176536999 1.199667572 1.225712843 1.173876988 1.162022765 1.161268339 1.201744977 1.182836645 1.174295388 1.177495706 1.175344082 1.160132537 1.190941362 1.205925861 1.211617772 84388649 urec Oceanicola batsensis HTCC2597 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola batsensis; 0.895413636 0.909676138 0.867288426 0.887169939 0.876796892 0.903324274 0.861137794 0.878027576 0.88892842 0.886059614 0.882634958 0.887226019 0.884331037 0.887884717 0.86100557 0.897983363 0.876111589 0.925444195 354571837 phn Mesorhizobium australicum WSM2073 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium australicum; 0.838989023 0.83856582 0.839703041 0.821320079 0.822033839 0.878356439 0.875086492 76057469 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.084411203 1.109040872 1.086839654 1.07165634 0.996574193 1.049923399 1.017198479 1.031666637 1.049768159 1.052137086 1.036625819 1.032112115 1.020068251 0.997052703 0.991656588 1.019933377 1.068399682 1.040512872 385678937 linb Amycolatopsis sp. ATCC 39116 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis; 0.85672694 0.916341861 0.904107071 0.881601576 0.891675572 0.899352329 0.855299698 0.850353578 0.902272259 0.827877721 0.800800168 0.822660616 0.833970032 0.883803635 0.916399232 220924329 fthfs Methylobacterium nodulans ORS 2060 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 1.215976232 1.242384641 1.188539804 1.22537619 1.193180544 1.218358095 1.173071112 1.18066129 1.192618914 1.190687908 1.183111993 1.198030744 1.172496287 1.187641113 1.173975563 1.18651047 1.229210462 1.209849949 333982851 arsm Methylomonas methanica MC09 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylomonas;species:Methylomonas methanica; 1.01480368 1.014075673 0.962612912 1.00021112 0.990414069 1.006921734 1.018350183 1.015894395 0.979947742 0.983823878 0.939659167 0.984214983 0.98907636 0.982140306 0.99814612 0.983636128 1.011775149 0.980967342 94471279 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.931421185 0.842567997 0.819710612 0.897017947 0.843252036 0.801773071 0.863934792 0.931973759 0.911664127 349686598 tktA Gluconacetobacter oboediens 174Bp2 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter oboediens; 1.0907531 1.084661506 1.026169647 1.080086629 1.03507765 1.106816994 1.012439427 1.054207989 1.051195676 1.072711947 1.040586531 1.069871883 1.005283846 1.071922799 0.992595141 1.048247807 1.075613525 1.099339939 374421203 tktA Bradyrhizobium sp. WSM471 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 1.371117602 1.357551415 1.341745637 1.326246115 1.295931017 1.36369095 1.29660276 1.317391608 1.307368985 1.340527124 1.299320636 1.308043842 1.269781594 1.306387022 1.250399443 1.29650901 1.353697901 1.335681674 68535958 fthfs Corynebacterium jeikeium K411 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium jeikeium; 0.953501548 0.948324112 0.950897553 0.949515466 0.918642318 0.958970948 0.942810016 0.932284504 0.940072186 0.914954226 0.936216108 0.949787408 0.889515535 0.9184659 0.816777134 0.912993768 0.951476933 0.994787716 293393835 cellobiase Serratia odorifera DSM 4582 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia odorifera; 1.015000931 1.019821099 0.942903176 1.002259575 0.944276682 1.023896211 0.962562375 0.95263581 0.986660551 1.007364902 0.947699304 0.992749854 0.936342446 0.981673804 0.908774585 0.926693841 0.995950859 1.024831693 315408697 mdlc Micromonospora sp. L5 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Micromonospora; 1.047873951 1.038964324 1.028254279 1.059000843 1.044718793 1.0653267 1.027390544 1.064863887 1.020289971 1.001443818 1.038934452 1.053927642 1.030503728 1.016076671 1.025404119 1.033313543 1.037654128 1.034157055 219868864 fthfs Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio desulfuricans; 0.943500217 0.978481221 0.949679644 0.971711563 0.941206816 0.974309307 0.938534816 0.925329337 0.958555593 0.970981208 0.949401911 0.947654141 0.945280021 0.92678918 0.899679548 0.942623681 0.965272012 0.976979162 209401664 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.99437665 1.012386379 0.997361831 0.994076542 0.980947242 1.000919464 0.93286972 0.993350635 1.025536613 0.995671894 0.995942202 0.996975174 1.004490396 0.983184028 0.940342125 0.960506537 1.001711422 1.072965201 164455580 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 1.185618297 1.170401803 1.129467558 1.159386644 1.121060642 1.152896937 1.108514567 1.121751041 1.156845545 1.130299558 1.121786363 1.145565274 1.12148099 1.120604088 1.105741974 1.143012073 1.162096659 1.143981143 302411364 cutinase Verticillium albo-atrum VaMs.102 Carbon Cycling Carbon degradation Cutin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticilium;species:Verticillium albo-atrum; 0.857899568 0.827481226 0.841910747 0.87220437 0.885225108 0.86166158 0.82907916 0.853166742 0.864900475 0.851571574 0.829976913 0.856504371 0.854906925 0.821242931 0.855986051 0.840390488 0.855405782 223893343 mannanase bacterium Ellin514 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobia subdivision 3;genus:Pedosphaera;species:Pedosphaera parvula; 1.032008492 1.008993399 1.011523871 1.014252195 0.994658978 1.003068024 0.970349306 0.968366954 1.003866658 0.996643646 0.998982887 0.995920551 0.960842421 0.969681432 0.96035812 0.976806743 1.041870953 1.018798888 23012946 ppx Magnetospirillum magnetotacticum MS-1 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum magnetotacticum; 1.013301231 1.018374363 1.017022236 1.00295008 0.932662971 1.010491909 0.934117323 0.986675766 0.988639906 0.977835341 0.973865798 0.956121007 0.919838992 0.984973902 0.919165108 0.96045237 1.004020689 0.999919362 357009841 terc Paenibacillus elgii B69 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus elgii; 1.152889313 1.118825928 1.09590308 1.151614099 1.089113638 1.116377571 1.089335776 1.109680808 1.139543133 1.09725762 1.079433315 1.114640611 1.083373731 1.080132501 1.074589088 1.089693083 1.142060514 1.092379599 159046014 cmci Dinoroseobacter shibae DFL 12 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 1.220644113 1.212685168 1.21240796 1.210001289 1.205181496 1.237658583 1.20820988 1.227499015 1.200279015 1.18274106 1.191617609 1.207242687 1.208771055 1.155275126 1.206538838 1.188709469 1.243605512 1.174955226 353189741 amyA Mycobacterium rhodesiae JS60 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 1.072216918 1.071523645 1.084662909 1.096784278 1.089870313 1.05368529 1.068099628 1.091147532 1.073055657 1.051276925 1.075870309 1.054980807 1.033685012 1.027193019 1.010952252 0.999648935 1.072130597 1.047841001 361055358 mer Sulfobacillus acidophilus DSM 10332 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XVII. Incertae Sedis;genus:Sulfobacillus;species:Sulfobacillus acidophilus; 0.778309703 0.869129058 115607477 alkb uncultured bacterium Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria; 0.851878365 0.7934154 0.81567333 0.898439031 0.812162593 0.86373114 0.847934592 0.873988749 0.891472869 0.853760793 0.917616419 0.875193911 0.81146953 0.834462582 0.830639742 0.841687714 0.897508039 0.850442953 321146126 mcra uncultured archaeon Carbon Cycling Methane Methanogenesis superkingdom:Archaea; 0.838694782 0.79824894 0.832666586 0.789200194 0.79969312 0.777700333 0.826446181 0.779481215 0.828498557 0.806966661 0.826028783 0.880139173 259483914 bph Aspergillus nidulans FGSC A4 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 0.835069125 0.82156659 0.844556316 0.841336275 0.848224177 209401868 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.94764875 0.946666794 0.937287962 0.956532575 0.849108732 0.89942856 0.887288035 0.893015628 0.948657763 0.898904993 0.911569421 0.860260073 0.835068074 0.909618692 0.865816771 0.894432301 0.980366364 0.959762993 254454805 dmdA Octadecabacter antarcticus 238 Sulfur DMSP degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter arcticus; 0.946841164 1.005571954 0.998886681 1.0109492 1.005058485 0.976119956 0.979385835 0.981452826 0.991712432 0.993144048 0.978912916 1.01896052 0.982685464 0.980789024 1.013536965 0.98181853 0.978427984 0.982670911 259652703 TIM Methylibium petroleiphilum PM1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 1.18308563 1.171943828 1.145227393 1.182189279 1.171793661 1.188671566 1.167770155 1.162796882 1.151757768 1.138122237 1.170298688 1.207087123 1.160152247 1.149327137 1.148718176 1.180464878 1.17983995 1.148699793 163698273 vana Methylobacterium nodulans ORS 2060 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 1.152728726 1.137930209 1.058291481 1.062870226 1.073491569 1.132706986 1.073094334 1.074565378 1.096679092 1.080369614 1.106232001 1.085752983 1.047704442 1.090561907 1.091175761 1.084150111 1.120086851 1.114174319 134053815 CsoS1_CcmK Desulfotomaculum reducens MI-1 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum reducens; 0.763666389 0.78911786 0.808089931 0.820682268 116062642 sucA_DiC4HB Aeropyrum pernix K1 Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Desulfurococcales;family:Desulfurococcaceae;genus:Aeropyrum;species:Aeropyrum pernix; 0.848133372 0.833828846 0.82521662 0.839549542 0.793938132 0.812421186 0.808722565 0.779218201 229610701 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.958018228 0.956713823 0.94440489 0.975420763 0.97219815 1.001676252 0.963454436 0.950548143 0.971684637 0.988624667 0.982005712 0.969967114 0.949539155 0.896198346 0.908582991 0.930904217 0.991652366 0.937952583 146410039 mdld Bradyrhizobium sp. BTAi1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 1.12890156 1.169933202 1.130132009 1.110822164 1.127443966 1.185019492 1.108298765 1.113702644 1.104291449 1.131358572 1.107127075 1.122709004 1.116178946 1.110814308 1.154281472 1.128349311 1.148237971 1.168384328 115371933 ppk Stigmatella aurantiaca DW4/3-1 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 1.328895922 1.311200872 1.284572828 1.306298143 1.261888508 1.296735121 1.270717494 1.283729219 1.30982726 1.286295045 1.269142538 1.301075483 1.266372506 1.234311667 1.283730262 1.249239759 1.330851576 1.306180458 325261346 ara Clostridium sp. D5 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium; 0.834126595 0.930754314 0.840526836 0.784073639 0.846348152 0.825422866 3283038 silicon_transporter NA Metal Homeostasis Silicon Transport 1.235293995 1.21145802 1.146027365 1.190431828 1.139116188 1.181343039 1.129239612 1.154857752 1.174233993 1.147265199 1.111347003 1.154923107 1.106096881 1.102410697 1.101547782 1.134603093 1.201778612 1.128266594 62468090 bco uncultured bacterium Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria; 1.155840447 1.145080475 1.113128268 1.159212647 1.114497928 1.144975838 1.126851158 1.11369418 1.105861478 1.116659378 1.114925008 1.13257508 1.121057218 1.099688801 1.109371655 1.137985405 1.142618353 1.135039373 22294669 CsoS1_CcmK Thermosynechococcus elongatus BP-1 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Thermosynechococcus;species:Thermosynechococcus elongatus; 1.169526365 1.163437577 1.154477786 1.185461167 1.136021356 1.14397125 1.154530849 1.170249794 1.161490711 1.163541281 1.13806289 1.186654438 1.106480917 1.09553844 1.127923968 1.152980047 1.16770115 1.158238255 163797467 ppx alpha proteobacterium BAL199 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 1.05103914 0.988721931 1.011010072 1.027616176 0.963273089 0.946438083 0.952626348 0.993261221 1.017890419 0.971269041 0.944684609 1.048066903 0.949210063 0.925700259 0.946490185 0.945629881 1.01587786 0.986961838 28868696 nitro Pseudomonas syringae pv. tomato str. DC3000 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 0.843400036 0.858435941 0.797987128 0.815396779 0.802363669 0.857749305 0.87330091 0.808998927 0.803538125 0.834371384 0.824818874 0.82616131 0.86846223 324998528 amyA Pseudonocardia sp. P1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Pseudonocardia; 0.823808723 0.819892784 123967460 one_ring_23diox Sphingobium yanoikuyae Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium; 0.849923051 0.864919139 0.863138113 0.808198475 0.832241485 0.828068875 0.80591721 0.838483957 0.861503393 0.863926557 0.810696622 0.854939163 0.80135741 0.824283433 0.876218048 0.897588731 217979565 nhh Methylocella silvestris BL2 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Methylocella;species:Methylocella silvestris; 0.868345668 0.849187093 0.804940849 0.811520931 0.801117781 0.825205105 0.85665302 0.847180638 0.820871412 0.781236226 0.850620837 0.817308882 0.889849385 238720449 CsoS1_CcmK Yersinia mollaretii ATCC 43969 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia mollaretii; 0.818537255 0.827041106 0.84197681 0.804817859 0.840274709 0.782674372 0.809846784 0.874105019 197285564 dmsa Proteus mirabilis HI4320 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Proteus;species:Proteus mirabilis; 0.90923381 0.888464209 0.894180089 0.87194477 0.804871201 0.822255184 0.869396816 0.833566283 0.847798725 0.887902661 0.851686079 0.823506841 0.830103174 0.895865034 0.891913531 156063366 alpha_galactosidase_fungi Sclerotinia sclerotiorum 1980 Carbon Cycling Carbon degradation Other superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Sclerotinia;species:Sclerotinia sclerotiorum; 0.818898368 0.823874233 296426626 phenol_oxidase uncultured bacterium Carbon Cycling Carbon degradation Lignin superkingdom:Bacteria; 0.958758847 0.938490884 0.951759778 0.918071118 0.963365776 0.890827916 0.865176909 0.92148086 0.973990214 0.875584049 0.93010154 0.964828713 0.878011757 0.858000461 0.847040492 0.90787244 0.94280977 0.928982506 83025972 alkb uncultured bacterium Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria; 0.835550993 0.818049974 0.853574791 0.876263473 0.893071739 0.824972442 0.855930073 0.806978876 0.846062856 0.814815861 0.819157876 0.883543667 0.792895101 0.833143457 0.850605125 0.876626919 323364558 nifh uncultured microorganism Nitrogen Nitrogen fixation NA 0.764450042 0.78610883 0.82988064 0.805578562 67530644 poba Burkholderia vietnamiensis G4 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia vietnamiensis; 1.093108814 1.076513192 1.054703113 1.058643075 1.032947202 1.061317808 0.962916916 0.947773401 1.03674747 1.026198442 1.048389924 1.048753102 1.034053446 0.998869445 0.977642198 1.005355623 1.05820315 1.039351484 157804777 APS_AprB Thiobacillus denitrificans Sulfur adenylylsulfate reductase NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus; 0.756175416 0.787290776 0.794514621 0.791866165 375098487 linb Saccharomonospora cyanea NA-134 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora cyanea; 1.176056411 1.155275473 1.15175079 1.150799524 1.140938394 1.180446454 1.136931035 1.125534674 1.16460906 1.159072248 1.167987596 1.155754993 1.120010878 1.106407876 1.109175557 1.132851582 1.162779742 1.166410666 145238722 exoglucanase Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 0.784636947 0.815777869 121307524 amyA Thermosinus carboxydivorans Nor1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Thermosinus;species:Thermosinus carboxydivorans; 0.855586131 0.854605434 0.884361944 0.82161295 0.808318265 0.815425518 0.864050423 0.87163097 0.835978437 0.822470363 0.846861706 0.860979 0.852042862 302687718 Glucose_oxidase_fungi Schizophyllum commune H4-8 Carbon Cycling Carbon degradation glucose superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 1.255511121 1.250421508 1.212733808 1.213127186 1.213216994 1.241891604 1.198304473 1.186183023 1.182643727 1.201466352 1.214634189 1.218389626 1.206319508 1.189002246 1.158513589 1.200989062 1.251053924 1.235568344 294791061 xyla Scardovia inopinata F0304 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Scardovia;species:Scardovia inopinata; 0.907850064 0.938795024 0.890940608 0.923145952 0.945196072 0.943459701 0.854757494 0.883213262 0.908466015 0.942253731 0.896678251 0.912802792 0.890501679 0.91747356 0.849214942 0.892937364 0.93589503 0.926864103 328813287 ppx Verrucosispora maris AB-18-032 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Verrucosispora;species:Verrucosispora maris; 1.153246039 1.120409892 1.115784822 1.14548206 1.103192804 1.112951597 1.099044317 1.124202944 1.122767873 1.13595635 1.102277623 1.140232033 1.106707721 1.107332818 1.08110632 1.122987194 1.145189847 1.113347231 218509563 merb Rhizobium etli Brasil 5 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 0.807449963 0.80079385 0.893862966 226518269 mg_chelatase Micromonas sp. RCC299 Secondary metabolism Pigments Chlorophyll superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Mamiellophyceae;order:Mamiellales;genus:Micromonas; 0.881980025 0.891117362 0.884350578 0.891286137 0.881403108 0.907322187 0.876428155 0.808266605 0.890193826 0.832072879 0.919222297 0.846336942 0.840039471 0.821493806 0.865885946 0.815991017 0.913627444 0.942993782 92908605 endochitinase Mycobacterium sp. JLS Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 1.090549352 1.070069581 1.053707677 1.110036016 1.076973271 1.012481441 1.020550579 1.072116186 1.095953226 1.090732703 1.074744105 1.135604754 1.068257659 1.039834177 1.01819133 1.040460368 1.065255631 1.05081935 46307948 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.907095666 0.855944491 0.880873268 0.894564924 0.841061186 0.860273223 0.835542238 0.852800397 0.886915148 0.851868479 0.861028831 0.821454433 0.911799494 0.879803427 330428551 terc Pusillimonas sp. T7-7 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Pusillimonas; 1.310189793 1.305279212 1.239193166 1.292952788 1.313835407 1.3041604 1.273066821 1.26485724 1.278556709 1.2754366 1.283825747 1.30716126 1.26312123 1.222104863 1.247109364 1.276750978 1.28931143 1.226306403 262284393 mcra uncultured archaeon Carbon Cycling Methane Methanogenesis superkingdom:Archaea; 1.091033853 1.128744269 1.083926558 1.064265254 1.032588917 1.102237976 1.017435169 1.059594779 1.043143812 1.070283172 1.032920331 1.026478232 1.033153041 1.062124308 1.029335216 1.050513704 1.079141845 1.099362354 111073793 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 1.016748059 0.93876156 0.903517425 0.929878954 0.888719664 0.940590734 0.895425295 0.941823859 0.938112802 0.917353613 0.980883894 0.925245225 1.008670425 0.902051525 1.033513213 0.960911616 407776601 ben_bcla Nitratireductor pacificus pht-3B virulence NA NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Nitratireductor;species:Nitratireductor pacificus; 0.916799771 0.867214656 0.893594882 0.88132945 0.913046223 0.922911229 0.903040369 0.919769923 0.875062406 0.875257952 0.909376592 0.872970039 0.862840901 0.854679726 0.834201403 0.824043107 0.864575095 0.9066958 334127848 amyA Centipeda periodontii DSM 2778 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Centipeda;species:Centipeda periodontii; 0.923564827 0.944359139 0.978585216 0.938126737 0.958977194 0.982946339 0.982369888 0.892379534 1.009306125 0.965044799 0.936742683 0.888579755 0.919413925 0.876536325 0.920252731 0.925718067 0.922433666 85719234 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 0.840759304 0.903698193 0.881415598 0.913027902 0.869939742 0.852798666 0.847688253 0.865235081 0.898532131 0.86908513 0.902712766 0.809176857 0.817376104 0.827470959 0.829563591 0.805252602 0.87765841 0.893886224 327197108 aps_apra uncultured bacterium Sulfur adenylylsulfate reductase NA superkingdom:Bacteria; 0.866579674 0.907488916 0.885045936 0.893760445 0.862177422 0.882415501 0.85388819 0.796719193 0.873541201 0.828626651 0.818508395 0.800935418 0.826367462 0.794756143 0.863824484 0.907811371 340359044 glucoamylase Actinomyces sp. oral taxon 448 str. F0400 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 448; 0.972514529 0.865263483 0.866385968 0.917490918 0.903383507 0.936567198 0.836270282 0.869979987 0.893780479 0.857013031 0.885114471 0.931488996 0.8115223 0.970702412 0.884751296 409417741 poba Pseudomonas sp. HYS Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.794581717 0.903583435 0.812717166 0.861814103 0.809256309 0.831129408 0.81708307 0.858816225 0.812733695 0.890550346 0.903191981 285027023 tfda uncultured bacterium Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria; 0.980167094 0.986518753 0.939712702 0.971230613 0.93967881 0.982929381 0.967919428 0.943392218 0.98208856 0.966541603 0.942171708 0.966488508 0.932781258 0.9519 0.929001628 0.995996545 0.972215894 0.923816067 77458943 tktA Pseudomonas fluorescens Pf0-1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 1.032659833 0.967745319 0.924616959 0.998035271 1.00604006 1.030211736 0.906068035 0.939887507 0.980989558 0.966710409 0.947348699 0.949487204 0.930821454 0.958765477 0.951523554 1.004771436 1.154697754 0.985143893 255261532 dmdA Thalassiobium sp. R2A62 Sulfur DMSP degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Thalassobium; 0.92932797 0.924432181 0.869757435 0.92928894 0.821472372 0.891317707 0.863714408 0.895444688 0.931825582 0.893031166 0.894929892 0.897502437 0.875612448 0.898299876 0.883960164 0.86485168 0.934358276 0.89191645 289185215 fthfs Clostridiales genomosp. BVAB3 str. UPII9-5 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;species:Clostridiales genomosp. BVAB3; 0.860573395 0.838900887 0.836874516 0.919469726 0.831921082 0.853088837 0.794484851 0.881883405 0.891120256 0.876445832 0.790354004 0.838175177 0.808642604 0.839511558 0.863448191 0.870154593 77390478 GAPDH_Calvin Rhodobacter sphaeroides 2.4.1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 1.289583305 1.201178778 1.282081365 1.214191006 1.223819017 1.268285828 1.211617945 1.182176872 1.200183591 1.252442345 1.205546676 1.224797984 1.197054211 1.201538985 1.177902626 1.194596301 1.281943515 1.257780431 151636 vana Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria; 1.013841976 1.009881006 1.059529412 1.070186254 1.022831074 1.055937585 1.038204122 1.074907539 1.0479852 1.072444731 1.06252022 1.061452285 1.001334083 0.988968779 0.964736307 0.998136034 1.027744856 1.004044659 365539226 FBPase Vibrio ordalii ATCC 33509 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio ordalii; 1.056408136 1.024548325 0.974691518 1.003700796 0.963088573 1.010071398 0.937146257 0.977751872 0.996420871 0.985733978 0.968796114 0.985620783 0.92447156 0.965207259 0.864375722 0.950205212 1.037241515 1.023974344 112821599 one_ring_23diox Sphingomonas sp. KA1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 0.858761464 0.86115148 0.827630346 0.889559238 0.823935821 0.862051912 0.918991526 0.815364475 0.813315135 0.80760204 0.879865185 0.87622076 62149134 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.81385061 0.894243668 0.787440271 0.881317494 0.86228085 0.833522054 0.833638221 0.810525748 0.85274287 0.940261647 196178304 Sir Microcoleus chthonoplastes PCC 7420 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Microcoleus;species:Microcoleus chthonoplastes; 0.829537931 0.81481072 0.8333807 0.936773058 0.836192856 0.86520027 0.875079312 0.913259017 0.830408261 139438277 pme Collinsella aerofaciens ATCC 25986 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Collinsella;species:Collinsella aerofaciens; 1.33856167 1.307735217 1.30380564 1.318274201 1.298201787 1.344766127 1.322386223 1.324118903 1.301138791 1.295650988 1.293456451 1.323573369 1.267389648 1.266327617 1.242833203 1.296576353 1.322322519 1.30166919 422313915 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.94964973 0.958919005 0.932344108 0.980835901 0.959948483 0.983054584 0.965290538 0.927135048 0.957333669 0.982990605 0.970320548 0.982919353 0.972969764 0.922418178 0.922827714 0.991612403 0.986657118 0.980211694 319913874 cellobiase mine drainage metagenome Carbon Cycling Carbon degradation Cellulose 0.887249584 0.875841565 0.862796138 0.867831674 0.833252723 0.847199934 0.877052548 0.815727663 0.818518607 0.820855505 0.846916252 0.836038877 169786817 merb Mycobacterium abscessus Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 1.029232942 0.915347456 0.944311123 0.926064913 0.85485074 0.912843761 0.879361149 0.923341687 0.956661805 0.938740066 0.930531741 0.883419281 0.833262309 0.870768617 0.852086014 0.94223629 0.96436063 78513570 xylc Bradyrhizobium sp. BTAi1 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 1.13570608 1.110148538 1.118841968 1.102263079 1.099726176 1.108431821 1.082222913 1.103580507 1.115893759 1.101397236 1.097330323 1.078588539 1.036714583 1.077082725 1.07237634 1.035678135 1.110689352 1.11026776 28899777 ppx Vibrio parahaemolyticus RIMD 2210633 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 0.962020479 0.998912823 0.931132953 0.974371953 1.05863147 0.961089485 0.983985916 0.847133066 0.940134904 0.972166285 0.942510962 0.91923051 0.968053536 0.935432975 0.884425701 0.935772026 0.986602956 0.965392213 62425089 ppx Brevibacterium linens BL2 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Brevibacteriaceae;genus:Brevibacterium;species:Brevibacterium linens; 1.107187507 1.084141128 1.017684525 1.110311548 1.005664692 1.078778462 1.044772949 1.086555842 1.076201763 1.064894004 1.056216147 1.075962266 1.008781312 1.052167838 0.99725348 1.061506306 1.085497994 1.089598768 113946760 amyA Salinispora tropica CNB-440 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora tropica; 1.141430769 1.147476459 1.066185465 1.118860783 1.081444327 1.11963551 1.056677345 1.100911291 1.105137991 1.109608487 1.092477863 1.110640605 1.059381387 1.098702559 1.03383048 1.085761985 1.113689571 1.142464419 123967445 xylg Sphingobium yanoikuyae Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium; 1.05550222 1.063548936 1.04832763 1.039127427 0.995676385 1.077731512 1.031194986 1.071586966 1.062891047 1.067138401 1.056250681 1.071536176 1.029530513 1.049506856 0.996842597 1.035730924 1.06636507 1.060205972 254451876 FBP_aldolase Octadecabacter antarcticus 238 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter arcticus; 1.144958834 1.162872219 1.131847256 1.14198051 1.124598223 1.152252808 1.096863124 1.094498388 1.138441104 1.119294598 1.105770025 1.138841634 1.109858167 1.08630865 1.104556603 1.113010677 1.144876572 1.127101595 115259424 atzb Rhizobium leguminosarum bv. viciae 3841 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 0.782376031 0.827394913 0.800805099 0.774744378 46241266 exoglucanase Nectria haematococca mpVI Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Nectria;species:Nectria haematococca; 0.908033392 0.905976544 0.902956626 0.975029825 0.896862529 0.898645455 0.933172245 0.940144854 0.912495587 0.878020108 0.89282524 0.909374946 0.847609511 0.85601896 0.873343616 0.859648846 0.903540428 0.905384164 32307993 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.020196177 0.990328499 1.057139098 1.013863709 0.933146359 0.984502019 0.947144854 0.97773814 1.02736243 0.992474033 0.960105306 0.936667507 0.927707505 0.95180055 0.974007241 0.959204951 1.033397868 1.001291947 365264252 fthfs Actinomyces sp. oral taxon 849 str. F0330 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 849; 0.887597607 0.866391584 0.916166109 0.930528127 0.917973143 0.904259584 0.900841014 0.888846173 0.919295241 0.933201411 0.848195125 0.898800977 0.81488654 0.82692108 0.867143499 0.871381013 0.898064897 154174449 napa Campylobacter curvus 525.92 Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter curvus; 0.912090655 0.896831858 0.817486967 0.857019024 0.86204136 0.940767704 0.841559542 0.856134813 0.897367056 0.94031241 0.826239692 0.92836148 0.816807597 0.907266991 0.947632249 0.877618129 0.88224403 118470674 linc Mycobacterium smegmatis str. MC2 155 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 0.90416991 0.914123017 0.888648731 0.901262029 0.90518302 0.902507651 0.890348568 0.870810736 0.907795741 0.885172777 0.881735997 0.907815688 0.842837628 0.848315531 0.854841165 0.903606013 0.925726011 54310028 arsc Photobacterium profundum SS9 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium profundum; 0.949103975 0.970575091 1.138887786 1.017582599 1.026569135 0.935170325 0.954476122 0.983925543 0.960939839 0.961960226 0.917784337 0.954009675 0.968673434 0.931366873 0.958786057 0.986300151 0.920327435 0.942975784 227113871 endoglucanase Pectobacterium carotovorum subsp. brasiliensis PBR1692 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium carotovorum; 1.078453275 1.033587144 1.049562214 1.05616847 1.055463235 1.064915169 1.053294948 1.056251675 1.332410199 1.048781485 1.024394882 1.02905883 1.096091184 0.978951886 0.946776788 0.997010757 1.06447165 1.06178931 334145465 aln Novosphingobium sp. PP1Y Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 1.016679314 0.994002804 0.964445476 0.964429815 1.001566899 0.996850092 0.97245788 0.917355015 0.957305044 0.994977902 0.965343173 0.946988832 0.995544367 0.964546974 0.947963746 1.015128161 0.999642729 1.014954212 260574364 rubisco Rhodobacter sp. SW2 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter; 1.326306222 1.292672554 1.297207584 1.303121603 1.273904283 1.321918404 1.272727872 1.305421974 1.309235804 1.280535485 1.282005353 1.307760945 1.276420862 1.248793221 1.266923388 1.271013753 1.343336674 1.289566503 345012665 hyaluronidase Streptomyces violaceusniger Tu 4113 Carbon Cycling Carbon degradation hyaluronic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces violaceusniger; 0.800563569 0.854434119 0.837309673 0.840190812 0.804973471 164455514 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 1.17415422 1.157833186 1.09850106 1.135157929 1.140068362 1.191522456 1.155627927 1.155243409 1.135295076 1.123938845 1.137209077 1.125819966 1.122232757 1.096048511 1.079210555 1.071879706 1.1428949 1.14083719 1336632 hcab Comamonas testosteroni Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas; 0.878184686 0.917040212 0.90054425 0.956990178 0.898265053 0.854062997 0.8738125 0.885190905 0.877343415 0.911074104 0.88627805 0.886845989 0.826435768 0.862342016 0.889891804 0.897404284 0.887229157 282948471 gdh Citrobacter rodentium ICC168 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter rodentium; 0.926676226 0.892608114 0.896916233 0.920078989 0.895038486 0.880819189 0.905465017 0.900370564 0.882489066 0.831873097 0.880081399 0.909684187 0.933029233 158139619 CsoS1_CcmK Alkaliphilus oremlandii OhILAs Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Alkaliphilus;species:Alkaliphilus oremlandii; 0.774563707 0.822308679 0.786148818 0.823573402 359393556 alkk Halomonas boliviensis LC1 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas;species:Halomonas boliviensis; 0.766087676 0.7889906 374621430 FBPase Ectothiorhodospira sp. PHS-1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Ectothiorhodospira; 1.01914875 1.019625568 0.973738477 1.019287305 0.996301225 1.036801666 0.976116448 0.975528711 0.941904111 0.970224846 0.957709793 0.966276573 1.003661721 0.954242766 0.953182729 0.955641255 1.034039906 0.996643232 365418363 FBP_aldolase Bradyrhizobium sp. STM 3843 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 1.065721023 0.987187003 0.995147547 0.991913938 0.99794165 0.989314064 0.98730786 1.00932016 0.993127228 0.989520841 0.969827366 1.033037742 0.975983614 0.973196731 1.019505998 0.99798215 0.957446737 0.986249728 329308295 xylj Alicycliphilus denitrificans K601 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Alicycliphilus;species:Alicycliphilus denitrificans; 0.997306194 0.949358612 0.972431432 0.994074603 0.972642686 1.002187691 0.99515819 0.970274373 0.942361818 0.956319312 0.898228076 0.953918421 0.906672856 0.904096104 0.870852742 0.890780811 0.984937873 1.000605931 209401596 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.09436271 1.052197614 1.104439069 1.138332194 1.099312505 1.099993883 1.08411837 1.052188434 1.091562725 1.012763607 1.040100234 1.074825788 1.053468195 1.000351736 1.02486883 1.062479097 1.113731537 1.035730798 87281165 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.211901416 1.202517088 1.191891168 1.194189046 1.171496591 1.21278956 1.141616335 1.165120251 1.184176376 1.185381714 1.172788971 1.189628322 1.162906688 1.181710365 1.168630007 1.194666936 1.208744912 1.189792702 398113178 xylj Pseudomonas sp. GM102 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 1.12948215 1.072125787 1.13559315 1.124560288 1.05202219 1.117598244 1.055481741 1.092701918 1.124233834 1.067256002 1.054592907 1.125501251 1.076187967 1.043590644 1.206894601 1.069103154 1.156798615 1.136933346 118504470 ben_bcla Pelobacter propionicus DSM 2379 virulence NA NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Pelobacteraceae;genus:Pelobacter;species:Pelobacter propionicus; 0.985534547 0.965619947 0.812975079 0.894768529 0.873194228 0.941255601 0.853518883 0.882494299 0.917902019 0.889383663 0.831850813 0.872362497 0.916190373 0.888022281 0.839043341 0.854127688 0.917183756 0.946747555 378803694 one_ring_23diox Mycobacterium intracellulare MOTT-02 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium intracellulare; 1.073357778 1.079773788 1.051561209 1.061156658 1.042729249 1.069496407 1.023110037 1.031226529 1.067230049 1.057966008 1.041494296 1.04173513 1.023710769 1.03059716 1.039744482 1.082512238 1.081667371 116205992 pec_Cdeg Chaetomium globosum CBS 148.51 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 0.858813296 0.875753985 0.888825907 0.91674992 0.850787143 0.891650591 0.876557457 0.887609002 0.89237601 0.867144012 0.841448589 0.890280486 0.803908432 0.832329493 0.770011094 0.824578889 0.868470462 0.867471964 378824684 mer Sinorhizobium fredii HH103 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium fredii; 0.841664739 0.820733482 0.813635335 0.791210406 0.807272597 0.854448825 0.837677125 269794708 cda Sanguibacter keddieii DSM 10542 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Sanguibacteraceae;genus:Sanguibacter;species:Sanguibacter keddieii; 1.348482018 1.328010437 1.291020273 1.286243083 1.278673979 1.326499319 1.275578287 1.268396563 1.272954923 1.293046567 1.277126532 1.285864831 1.245688198 1.266399113 1.221618166 1.268859549 1.312162461 1.323503478 104780024 TIM Pseudomonas entomophila L48 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas entomophila; 1.011177533 1.002560229 1.002872314 0.995717478 1.013711222 1.009848194 0.95905349 0.970972797 0.967754021 1.014692936 0.997782743 0.988208549 0.982979369 1.037456301 0.985557855 1.016134131 1.011715344 1.017969577 90655410 CsoSCA uncultured marine type-A Synechococcus GOM 3M9 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 1.109858016 1.096700947 1.085687301 1.078353763 1.060118933 1.114867943 1.075483744 1.085994234 1.053770692 1.104387931 1.057168445 1.091560677 1.078191466 1.023002757 0.994913703 1.008116524 1.120199004 1.11263478 113897676 terc Herpetosiphon aurantiacus ATCC 23779 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Herpetosiphonales;family:Herpetosiphonaceae;genus:Herpetosiphon;species:Herpetosiphon aurantiacus; 0.844703688 0.805254814 0.907741936 0.837000427 0.858534184 0.806028433 0.895691742 0.836945552 222354262 hao uncultured bacterium Nitrogen Nitrification NA superkingdom:Bacteria; 0.84863591 0.848470736 0.842325188 0.885739039 0.841662527 0.806176917 0.86170391 0.858947406 0.880904337 0.828147448 0.818925291 0.85710043 0.824111327 0.818008113 0.803172173 0.873853358 0.81803123 254785798 arylest Teredinibacter turnerae T7901 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;genus:Teredinibacter;species:Teredinibacter turnerae; 1.103460815 1.082366553 1.164418012 1.133605723 1.113427753 1.148224454 1.130224192 1.137229236 1.154161431 1.118527545 1.099941928 1.126462614 1.081003051 1.071142218 1.05009715 1.156099929 1.183346141 1.161881048 363987042 fthfs Jonquetella anthropi DSM 22815 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Synergistetes;class:Synergistia;order:Synergistales;family:Synergistaceae;genus:Jonquetella;species:Jonquetella anthropi; 1.061057584 1.046611444 0.954986891 0.990991107 0.996338934 0.987907089 1.0368906 1.025205069 1.023942694 0.979522121 0.997049092 1.008727764 0.9492449 0.948054013 0.831525086 0.941802097 1.008198224 1.022971054 330996327 xylanase Paraprevotella xylaniphila YIT 11841 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Paraprevotella;species:Paraprevotella xylaniphila; 0.827772689 0.807777673 0.839647951 0.85035775 298379406 ppk Xanthomonas sp. AK(2010) Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas; 0.794421968 0.92659275 0.828072074 0.863529473 163761225 pcag Hoeflea phototrophica DFL-43 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Hoeflea;species:Hoeflea phototrophica; 0.837749205 0.841101802 0.884686139 0.894434354 0.861054228 0.896662776 0.844106876 0.828874721 0.893930605 0.885010281 0.856765016 0.886873162 0.904679841 0.853786548 0.808237014 0.848934082 0.878147961 0.874001055 116061977 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.241437345 1.290697088 1.256071157 1.260984794 1.262004611 1.302990148 1.230265932 1.260880036 1.241511383 1.257997322 1.234067595 1.240652845 1.260473378 1.235378579 1.224617251 1.262361724 1.276023293 1.245075572 379059153 amyA Serinicoccus profundi MCCC 1A05965 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Serinicoccus;species:Serinicoccus profundi; 1.048304329 1.037509383 1.007869012 1.039806072 1.010507278 1.001182245 0.982554959 1.011395954 1.02370829 1.012114472 0.987606809 1.021606086 0.98345632 0.989699496 0.95822948 0.986285627 1.019399471 1.000046921 408749690 catechol Rhizobium mesoamericanum STM3625 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium mesoamericanum; 1.300629953 1.245685492 1.271669564 1.277459683 1.254177004 1.275673489 1.267115378 1.242061346 1.273754835 1.262323604 1.262764265 1.27729371 1.215211686 1.207569152 1.204763504 1.248116185 1.275033926 1.243928223 256541945 phospholipase_A2_fungi Aspergillus oryzae Carbon Cycling Carbon degradation Phospholipids superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 0.952384335 1.162383711 1.042779093 1.077084359 0.976369062 1.011300489 1.000530852 0.966946908 0.972510628 1.011283172 1.020068518 1.050393645 0.960629411 0.966345299 0.952164047 1.001280242 1.054882438 0.935947715 114540674 GAPDH_Calvin Roseovarius sp. HTCC2601 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pelagibaca;species:Pelagibaca bermudensis; 1.207781236 1.223687064 1.173409089 1.199261776 1.178428068 1.238873815 1.171265816 1.159579217 1.177183927 1.190808477 1.18343744 1.194008134 1.172106955 1.16545878 1.151548302 1.181301116 1.196033128 1.190411796 255020279 pgk Acidithiobacillus caldus ATCC 51756 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus caldus; 0.770554801 0.810910716 227483187 tktA Thermosynechococcus elongatus BP-1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Thermosynechococcus;species:Thermosynechococcus elongatus; 0.77045894 0.81526847 88812717 terc Nitrococcus mobilis Nb-231 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Nitrococcus;species:Nitrococcus mobilis; 1.145566342 1.145560392 1.167976376 1.150410296 1.120416745 1.140524373 1.112548363 1.113968984 1.137781187 1.118501112 1.131798101 1.164598951 1.107928237 1.118043993 1.163438758 1.120745991 1.165307911 1.116946867 383640199 ppx Sphingomonas elodea ATCC 31461 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas elodea; 0.833200187 0.874430704 0.822812876 0.818702032 0.872838022 0.828058429 0.82417411 0.863679914 0.829309074 0.80939681 0.861438847 119225868 catechol uncultured bacterium Organic Remediation Aromatics Other aromatics superkingdom:Bacteria; 0.824057618 0.858759408 0.840487093 0.853484022 0.865792265 0.846798911 0.853373807 0.855237616 0.865865506 0.846024291 0.816732823 0.81629091 0.844933954 0.831757552 0.832616481 0.874712273 171914724 xyla Verrucomicrobium spinosum DSM 4136 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobiaceae;genus:Verrucomicrobium;species:Verrucomicrobium spinosum; 1.00158429 0.986034023 0.85821154 1.024677734 0.907167887 0.979888636 0.884082113 0.953623223 0.961414188 0.942275228 0.914091295 0.950196403 0.882905126 0.913025176 0.860194509 0.938521111 0.995906109 0.995464011 383781557 amyA Actinoplanes missouriensis 431 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes;species:Actinoplanes missouriensis; 1.142512474 1.112937789 1.119844296 1.112564161 1.101201323 1.169173807 1.097466174 1.108076607 1.12047461 1.112711912 1.089091635 1.108231814 1.052146016 1.104878323 1.034667872 1.093036525 1.100717851 1.094505352 330964384 catechol Pseudomonas syringae pv. actinidiae str. M302091 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae; 0.785599635 0.823871074 0.850988436 0.824227797 171060823 terc Leptothrix cholodnii SP-6 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Leptothrix;species:Leptothrix cholodnii; 1.024904126 1.056684928 1.051947997 1.086001933 1.065547894 1.069146608 1.055251105 1.084796597 1.054556462 1.090927747 1.046940299 1.037700356 1.021556496 1.005459757 0.992135168 1.006235295 1.073345002 1.049715414 92112480 poba Chromohalobacter salexigens DSM 3043 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Chromohalobacter;species:Chromohalobacter salexigens; 0.999434218 1.005241131 0.974749201 1.031885347 0.96774637 0.963599154 0.940481442 0.994666086 0.978620483 0.973101466 0.968716696 0.991529521 0.958670163 0.967208338 0.990928336 0.939617282 1.026719976 1.005800331 51468952 phenol_oxidase uncultured Basidiomycota Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota; 0.9449591 0.90778644 0.915549114 0.932298737 0.910013533 0.930206208 0.915985208 0.909773543 0.932984194 0.931535962 0.921062497 0.935996244 0.856714686 0.863935307 0.856811242 0.893800517 0.982411675 0.927175268 226943625 bphd Azotobacter vinelandii DJ Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Azotobacter;species:Azotobacter vinelandii; 1.445931252 1.394031346 1.391745361 1.40915944 1.392390429 1.390658605 1.366941664 1.387475863 1.423091577 1.394401714 1.377145214 1.414593949 1.359451086 1.333083381 1.325514568 1.370311321 1.40386946 1.38650367 315620965 ccmL Pseudoramibacter alactolyticus ATCC 23263 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Eubacteriaceae;genus:Pseudoramibacter;species:Pseudoramibacter alactolyticus; 0.872059226 0.871645484 0.865815251 0.819594819 0.860910483 0.851528212 7648481 amyA Arthrobacter sp. Q36 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 0.845021181 0.881806943 0.878635114 0.871013403 0.853209171 0.866558942 0.832565651 0.807109036 0.837846517 0.89090714 0.920219662 0.830209633 0.813016972 0.904765418 0.867913976 0.874685756 220692628 sdsa Aspergillus flavus NRRL3357 Organic Remediation Others NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus flavus; 0.854579695 0.814611769 0.859905486 0.816544759 0.89271534 0.827959737 0.821191812 0.83892318 0.811352458 0.817314426 0.810576046 0.855378119 0.834214755 0.863644932 0.831583579 339719829 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.90495326 0.89845211 0.960192021 0.896294681 0.821995792 0.951712615 0.859410599 0.894830012 0.890828309 0.968112349 0.91981622 0.851275342 0.913591372 0.936282373 0.98471025 0.914862063 0.940681993 0.988018487 308746696 amyA Enterobacter cloacae SCF1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter lignolyticus; 0.938944935 0.891937496 0.924486347 0.879640446 0.95364904 0.918953856 0.921175957 0.908823409 0.910973207 0.961112544 0.942950494 0.926274045 0.926346491 0.905737961 0.921826842 0.894465509 0.874697706 0.914165625 407278873 pcag Rhodococcus sp. P14 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 0.837886756 0.89804721 0.845723943 0.879422675 0.867484999 0.924010952 0.892780287 0.889288224 0.851837331 0.805912508 0.877709642 0.86711123 0.87954234 404496386 bbs Geobacter metallireducens GS-15 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter metallireducens; 0.867716338 0.921115965 0.892082105 0.854545313 0.820510005 0.857508697 0.83628528 0.851457377 0.861619635 0.937081834 0.87793369 0.893445196 0.865369082 0.865481068 0.812234595 0.850632856 0.911700123 0.934816289 255106942 PRI Thalassiobium sp. R2A62 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Thalassobium; 1.038197844 0.986539869 0.995522034 0.981084385 0.890404663 0.960650341 0.913932309 0.992384815 0.98625205 0.999499886 0.918802321 0.986517058 0.922995788 0.93906712 0.913436373 0.949546571 1.0031488 1.018249188 240279545 amyA Ajellomyces capsulatus H143 Carbon Cycling Carbon degradation Starch superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces capsulatus; 0.913299553 0.902369142 0.883244795 0.931044461 0.920296203 0.869647917 0.932659344 0.895441332 0.943423767 0.979759872 0.903534456 1.032942625 0.944108251 0.876280482 1.028923363 0.994462556 0.93034909 0.901892865 383933510 ppx Rheinheimera nanhaiensis E407-8 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Rheinheimera;species:Rheinheimera nanhaiensis; 1.026669476 0.963222021 0.994394582 0.996096157 0.979037411 0.991430273 0.903366064 0.96043507 0.983705084 0.993802111 0.946383563 0.963409045 0.970896103 0.938017272 0.911679915 0.986487511 0.991308095 1.001404064 111073773 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 0.854314234 0.848323677 0.821789584 0.877143566 0.83922689 0.888646832 0.823449872 0.849992814 0.875301939 0.885709566 0.871798242 0.889813339 0.805626846 0.818531559 0.802771009 0.837480007 0.864711061 116251752 nasa Rhizobium leguminosarum bv. viciae 3841 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 0.853785726 0.868764026 0.801926802 0.874790617 0.83288395 0.83258123 0.870417288 0.849853951 0.850239717 0.864388959 0.854598941 110632106 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.941008771 0.924651006 0.880669287 0.90750012 0.921438025 0.920879659 0.900159769 0.874212469 0.863383118 0.873052237 0.871649242 0.899010477 0.851037242 0.908946238 0.870912027 0.866517355 0.916470567 0.949245235 116613091 phta Arthrobacter sp. FB24 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 1.02006267 1.010028946 0.973210939 1.052641821 0.953500744 1.033730364 0.968025762 0.941429074 0.986024366 1.018695832 0.970416154 0.979989263 0.939530293 1.033057411 0.93713869 0.969701903 1.022111368 1.022511757 169244302 pcpe Pseudomonas fluorescens Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.994091994 0.997571221 0.962607829 0.969590213 0.968060289 0.997136711 0.95002698 0.88437533 0.970344877 0.936101963 0.927799101 0.938257541 0.896673289 0.890618409 0.903859708 0.907965211 0.982422085 0.98767596 227075841 gdh Corynebacterium accolens ATCC 49725 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium accolens; 0.821344525 0.812299323 1.06597699 0.808851828 0.829064605 0.835520103 74317425 sqr Thiobacillus denitrificans ATCC 25259 Sulfur Sulfide Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus;species:Thiobacillus denitrificans; 0.887372912 0.8801348 0.827849666 0.876580312 0.905186974 0.951315603 0.883585528 0.87610854 0.858954854 0.893893966 0.843255838 0.854632938 0.874498541 0.892522289 371952252 linb Singulisphaera acidiphila DSM 18658 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Singulisphaera;species:Singulisphaera acidiphila; 0.889312214 0.91156947 0.892687654 0.899416855 0.891039887 0.874946911 0.862641253 0.863748922 0.878434067 0.8603289 0.910017199 0.87279805 0.874261828 0.831226033 0.843546848 0.878620922 0.874656583 0.866666525 338902373 ppx Clostridium sp. SY8519 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium; 0.77804543 0.808712022 0.78214754 157362170 exoglucanase Polyporus arcularius Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Polyporaceae;genus:Polyporus; 0.895283273 0.942756135 0.920831795 0.947655405 0.94063969 0.92801122 0.930593785 0.897009792 0.885833778 0.954111649 0.89475076 0.891994911 0.96410727 0.968535866 0.893265058 0.912820793 0.92488787 0.910980557 260426599 mmox Citreicella sp. SE45 Carbon Cycling Methane Methane oxidation superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Citreicella; 1.20018409 1.161116475 1.183687573 1.147563572 1.129442838 1.155129714 1.15318053 1.116545581 1.197235832 1.132814118 1.142697444 1.151512437 1.109028724 1.076941935 1.090466985 1.117050077 1.21038509 1.147106543 332377300 fthfs uncultured bacterium Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria; 0.870770949 0.884724248 0.861255219 0.89847794 0.878580996 0.868234013 0.916112764 0.888199612 0.857034173 0.886166039 0.919145475 0.869258716 0.89092233 0.862396204 0.846341985 160897232 xylj Delftia acidovorans SPH-1 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 1.051644289 1.065022835 1.048797094 1.073246558 1.068080356 1.042681871 1.046588706 1.047224264 1.030802521 1.021986627 1.020277564 1.065826453 1.04972081 1.002648859 1.000675614 1.01012355 1.07680647 1.0408465 198282309 mer Acidithiobacillus ferrooxidans ATCC 53993 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus ferrooxidans; 0.856038078 0.78547218 0.805740602 0.820428836 0.833656572 0.81916552 0.833214546 0.849717656 0.818284834 0.819654474 0.836261037 0.815720369 0.83889018 377566689 alkb Gordonia sputi NBRC 100414 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia sputi; 0.968102646 0.971098136 0.944435919 0.950338465 0.896134343 0.984958708 0.919016537 0.968835819 0.931243347 0.979611005 0.890585345 0.954419625 0.86844405 0.941434925 0.818989593 0.906446531 0.959583941 1.022885257 353467245 phdj Burkholderia sp. DBT1 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 1.604640561 1.559957913 1.54927583 1.568004593 1.551258136 1.624259323 1.559023191 1.58485578 1.552097212 1.526459832 1.555836134 1.548191173 1.550699398 1.51353241 1.519043238 1.543419892 1.592205012 1.518561597 323358715 chitinase Microbacterium testaceum StLB037 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Microbacterium;species:Microbacterium testaceum; 1.126360358 1.108331099 1.112295819 1.129101625 1.128587266 1.129581741 1.070319245 1.091340287 1.10311077 1.09812103 1.107030912 1.147188812 1.090162774 1.063212637 1.072911865 1.088960003 1.087783949 1.071962569 114778450 rubisco Mariprofundus ferrooxydans PV-1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Zetaproteobacteria;order:Mariprofundales;family:Mariprofundaceae;genus:Mariprofundus;species:Mariprofundus ferrooxydans; 0.790328334 0.797641784 0.782872071 357426486 tktA Azospirillum lipoferum 4B Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum lipoferum; 0.891977891 0.932650113 0.902393357 0.882464719 0.915715316 0.878904864 0.942334341 0.91499905 0.862317884 0.907120878 0.928473467 0.910829312 0.86262919 0.857613727 0.823351131 0.862393406 0.931759777 0.943029849 237846178 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.264690943 1.214814883 1.225880639 1.222144558 1.167958466 1.164389524 1.143491007 1.188152283 1.204675059 1.207193015 1.203307688 1.208591925 1.19403175 1.15817101 1.136431496 1.192881803 1.247833141 1.195601661 284042061 arsm Conexibacter woesei DSM 14684 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Solirubrobacterales;family:Conexibacteraceae;genus:Conexibacter;species:Conexibacter woesei; 1.438349624 1.398100418 1.391672469 1.401493925 1.352601105 1.414451444 1.362186232 1.387564169 1.39143864 1.393068689 1.368218298 1.398096331 1.37844262 1.334959579 1.350695715 1.369789699 1.429742577 1.392889492 297163592 ara Truepera radiovictrix DSM 17093 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Trueperaceae;genus:Truepera;species:Truepera radiovictrix; 0.809399292 0.833534173 0.849299485 0.842559547 0.837441466 0.87029469 0.838367801 0.833634967 0.786220784 0.860706343 0.909382962 0.850129831 0.801148344 0.870043309 0.859153033 0.826666089 0.858297934 56680689 nirs Silicibacter pomeroyi DSS-3 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 0.910543325 0.922586255 0.886031245 0.952163963 0.881032608 0.904705186 0.870854682 0.901845433 0.91432365 0.863653414 0.869139399 0.920987689 0.879872934 0.835563387 0.872122729 0.896612779 0.92155355 0.875539605 291442085 one_ring_12diox Streptomyces ghanaensis ATCC 14672 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces ghanaensis; 1.09506629 0.930280985 0.867646948 0.95304978 1.029279979 0.899859011 0.971982734 0.913204263 0.925258742 0.899531924 0.950118302 0.927477849 0.957151119 0.912251662 0.916731741 0.919685565 0.872503117 0.945646737 336017508 amyA Lachnospiraceae bacterium 3_1_57FAA_CT1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae; 0.955711739 0.902366528 0.941738599 1.001658277 0.954608715 0.955011288 0.922648286 0.918396476 0.954766403 0.843864673 0.969449995 0.920799447 0.886228986 0.879366067 0.875310191 0.904155027 0.996583032 0.942204251 336115205 narg Bacillus coagulans 2-6 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus coagulans; 0.856685173 0.949325177 0.883799038 0.908655358 0.915222433 0.911781315 0.901871375 0.910080153 0.885958652 0.908497522 0.939410077 0.930172693 0.895021396 0.878090374 0.879422347 0.871726674 0.931066699 0.906718254 337262663 amyA Myxococcus fulvus HW-1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus fulvus; 0.845326882 0.814775612 0.828730051 0.834168531 0.829819793 0.811505591 0.810181951 0.838900129 0.853966116 0.836286383 179342840 nitrilase Methylobacterium populi BJ001 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium populi; 0.889568382 0.837841373 0.861696138 0.88922283 0.891519044 0.848559398 0.888758727 0.861738933 0.878065928 0.86412158 0.851045762 0.868172376 0.831754115 0.835262288 0.849966938 0.825162458 0.849072517 0.882107064 354958992 rubisco Bradyrhizobium japonicum USDA 6 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 1.179526387 1.107862433 1.123869891 1.171417799 1.091568069 1.111454698 1.107134933 1.183789155 1.155947975 1.111773483 1.107007973 1.169008425 1.097861575 1.080850171 1.082400487 1.117886981 1.138898479 1.083470929 73669221 arsm Methanosarcina barkeri str. Fusaro Metal Homeostasis Arsenic Detoxification superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosarcinaceae;genus:Methanosarcina;species:Methanosarcina barkeri; 0.833082813 0.840592709 0.821694882 0.855425014 0.825126942 319755696 amyA Deinococcus maricopensis DSM 21211 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus maricopensis; 0.936393899 0.865258755 0.923583942 0.911553975 0.886121251 0.923468644 0.875826685 0.874067613 0.917335473 0.858710298 0.82572311 0.843947734 0.828217942 0.809050119 0.80290756 0.92149661 0.934757937 254506323 amyA Vibrio parahaemolyticus 16 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 0.862850934 0.793160344 0.847284728 0.960656978 0.895743666 0.846904827 0.868081056 0.862005224 0.895067587 0.850123947 0.883166339 0.893424836 0.88475396 0.836830605 0.861604368 0.836476565 0.902115018 0.809691365 374985816 amyA Streptomyces bingchenggensis BCW-1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces bingchenggensis; 1.232610181 1.258395572 1.156912747 1.237930241 1.228454842 1.199693089 1.188587621 1.241284612 1.249202647 1.211302381 1.186010995 1.208854382 1.201116091 1.296932969 1.109519425 1.142659643 1.214066674 1.278508419 365425550 atzb Bradyrhizobium sp. STM 3843 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 1.142351057 1.201136376 1.113027256 1.160376187 1.145633399 1.159687368 1.117272302 1.078949869 1.13200304 1.154159847 1.15262909 1.154684524 1.137461979 1.12552263 1.101170322 1.135438174 1.150461986 1.160134878 71736439 xyla Pseudomonas syringae pv. phaseolicola 1448A Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas savastanoi; 0.929489489 0.901019987 0.921909776 0.961208869 0.938258209 0.883353415 0.911393238 0.947971198 0.935368125 0.918662329 0.95615713 0.939878962 0.926798109 0.858249698 0.810677052 0.910241122 0.892304128 0.872771589 145299696 napa Aeromonas salmonicida subsp. salmonicida A449 Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas salmonicida; 0.887387303 0.846496257 0.820891429 0.825282211 0.951063948 0.816189393 0.908488066 0.852189429 0.902471371 0.847744324 0.816313522 0.884822731 0.910838197 0.833995269 0.833516106 0.79858345 0.847165693 0.841159357 118424349 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.870467814 0.817118088 0.879595457 0.884263463 0.814712273 0.907322243 0.821323255 0.844228983 0.822581369 0.833485861 0.858518491 0.925182207 0.892789742 60475948 rubisco uncultured bacterium Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria; 1.145258658 1.119040456 1.116342835 1.129874233 1.113053237 1.132239944 1.107842215 1.10940769 1.147033345 1.131382652 1.09560195 1.115175487 1.074755658 1.043371894 1.032042695 1.03359815 1.131388498 1.107367445 194013485 mannanase Bacillus pumilus ATCC 7061 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus pumilus; 0.8236315 0.789554864 0.801744297 0.821057247 0.814640566 0.844207867 0.826178446 0.809485536 0.853732799 0.834611702 253690506 pme Pectobacterium carotovorum subsp. carotovorum PC1 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium carotovorum; 0.859342107 0.913799977 0.913210908 0.943183612 0.891996963 0.904251647 0.839154633 0.836516054 0.862748612 0.881253865 0.865555312 0.91667672 0.905946388 0.84295532 0.852403121 0.889126001 0.920923512 0.892042036 28853329 vana Pseudomonas syringae pv. tomato str. DC3000 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 1.106658177 1.0897992 1.103533598 1.154041857 1.073512254 1.110782034 1.045377001 1.134196547 1.130658763 1.073251377 1.07914151 1.128443186 1.086972242 1.07843585 1.104685722 1.055946934 1.111864307 1.14755008 343776655 CsoS2 Acidithiobacillus ferrivorans SS3 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus ferrivorans; 0.801185691 0.790129341 0.800547678 74038446 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.961945532 1.029723033 0.923805283 0.963112233 0.976301682 0.965168808 0.943966509 0.964054203 0.932931269 1.037632925 0.935831179 0.954354545 0.944985081 1.014672875 0.902060742 0.925614147 0.942345269 0.977680578 219965634 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.956892224 0.935531532 0.869557719 0.958558372 0.919112569 0.921773914 0.935079947 0.93830812 0.946967977 0.906321866 0.885048047 0.9093016 0.891369249 0.905290639 0.859375141 0.913231513 0.941353214 0.943709904 384214867 xyla Bradyrhizobium japonicum USDA 6 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 1.251861312 0.955896206 0.894007798 0.960777822 1.021712208 0.92157545 0.913674654 1.283986806 0.990856198 0.901448952 0.904569259 0.924195302 0.918082657 0.846951129 0.850352454 0.911747077 0.947577796 0.985469062 157845482 Sir Shewanella pealeana ATCC 700345 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella pealeana; 0.862218704 0.832511189 0.91633495 0.811278682 0.859117507 0.811594952 340028803 FBPase Paracoccus sp. TRP Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus; 1.180837305 1.18975411 1.14306412 1.161306948 1.156385497 1.154843639 1.12864624 1.150108499 1.159342751 1.178056223 1.159617589 1.144392229 1.105665171 1.107540725 1.089936668 1.120769953 1.162598631 1.183901502 114537780 mer Fulvimarina pelagi HTCC2506 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Fulvimarina;species:Fulvimarina pelagi; 1.091259335 1.033453476 1.094663153 1.046860504 1.011876885 1.030465628 0.956329231 1.026646496 1.068188065 1.03627367 1.045033149 1.045064322 1.029974817 1.008039955 0.977219144 1.02490491 1.078030272 1.050359689 213013106 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.920483006 0.924157406 0.837540394 0.889366701 0.808563752 0.861242548 0.870124574 0.836905516 0.889049341 0.824636792 0.820488699 0.859411361 0.886756925 0.905180779 118036452 pcag Burkholderia phytofirmans PsJN Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 0.968161907 0.922779032 0.985325689 0.96240319 0.968155101 0.947481313 0.956070666 0.940754259 0.933820308 0.944575207 0.962239427 1.005073592 0.974315191 0.926028698 0.951197723 0.919053415 0.933807188 0.957967508 378594410 cysJ Nocardia brasiliensis ATCC 700358 Sulfur Reduction NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia brasiliensis; 1.225312472 1.199500171 1.212599889 1.231239313 1.210360825 1.236781199 1.216919698 1.228257645 1.225363674 1.199061342 1.182016887 1.228270125 1.173003652 1.192647413 1.148261295 1.185633404 1.213360258 1.214600202 334141073 one_ring_23diox Novosphingobium sp. PP1Y Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 1.005026892 1.027474693 1.016432881 1.030869826 0.995240776 1.015954078 1.002378357 0.969500944 0.983958784 0.992108325 0.988847494 1.020312817 1.010632895 0.987015581 0.978078276 1.002237722 1.020514196 1.018798828 323365188 nifh uncultured microorganism Nitrogen Nitrogen fixation NA 1.01195035 1.002992301 1.025756572 1.012602298 0.942349434 0.994261355 0.915610405 1.02454894 1.031000206 0.99337865 0.979343048 0.991531055 0.919258378 0.946160676 0.906870994 0.980881447 1.002180338 0.991383792 33391293 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.370195198 1.325453168 1.334692414 1.3464093 1.312991716 1.369455042 1.326676435 1.344191747 1.325799965 1.323116382 1.338076979 1.346189052 1.296474577 1.299750488 1.270219569 1.32033985 1.346112362 1.317068381 296120037 cmci Corynebacterium ammoniagenes DSM 20306 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium ammoniagenes; 1.135996309 1.095183839 1.091054357 1.128855405 1.085873189 1.116944147 1.043079416 1.097244471 1.136617016 1.104033787 1.091648712 1.113227683 1.082520028 1.099263637 1.024170468 1.082583009 1.13244217 1.081651428 110819766 chnb Rhodococcus sp. RHA1 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 0.969750762 0.982917812 0.941363978 0.948430101 0.956583391 0.938841787 0.943393558 0.924222263 0.941182047 0.939595366 0.977360803 0.899328354 0.900375656 0.874961135 0.844827054 0.896582217 0.960484255 0.995785038 377558978 gdh Gordonia otitidis NBRC 100426 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia otitidis; 1.104671486 1.072584968 1.058655557 1.116243015 1.098149983 1.10255918 1.064450724 1.098132964 1.077078857 1.060033901 1.062627411 1.090008512 1.062759312 1.056633757 1.093157405 1.135565379 1.099812601 1.086659874 14209680 chrr Pseudomonas putida Metal Homeostasis Chromium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.899600731 0.876060282 0.809851447 0.812643372 0.812451129 0.8216624 0.841325627 0.849612523 0.851490075 0.842033628 0.849932107 83025990 alkb uncultured bacterium Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria; 1.010396388 1.019595817 1.011297071 1.062875043 1.004589852 1.040547649 1.025963159 0.97860263 1.033989994 0.973381646 0.964131973 0.997458175 0.93932332 0.937612171 0.953365067 0.960114389 1.035833085 1.021486113 385669711 chitinase Streptomyces tsukubaensis NRRL18488 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces tsukubaensis; 1.078419346 1.06430035 1.058127504 1.069647137 1.070966552 1.071298782 1.064631292 1.070073136 1.067402272 1.088316276 1.075898975 1.085138411 1.086029315 1.022541761 1.018659014 1.044485881 1.081123436 1.077576753 229473017 dsra uncultured bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.888079677 0.928751384 0.893506626 0.904550437 0.923820234 0.913908571 0.889213177 0.934567261 0.937052366 0.918328414 0.866203612 0.953204552 0.874854092 0.896205399 0.872177754 0.79855148 0.866045158 0.879762309 167703794 fthfs Clostridium ramosum DSM 1402 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Firmicutes;class:Erysipelotrichia;order:Erysipelotrichales;family:Erysipelotrichaceae;species:[Clostridium] ramosum; 0.837238096 0.797843023 0.804920185 0.876830178 0.832798214 0.836625425 0.82763786 0.818359772 0.799692352 0.79927637 0.853533844 0.844105807 237858253 GAPDH_Parabasalia Metadevescovina cuspidata Other Phylogenetic NA superkingdom:Eukaryota;order:Cristamonadida;family:Lophomonadidae;genus:Metadevescovina; 1.084444821 1.035710046 1.036748167 1.114304813 1.012836518 1.043429998 1.041082934 1.076125122 1.075196412 1.022283462 1.053908485 1.066111463 1.008829898 1.015205653 1.001269107 1.030983352 1.117623473 1.004697391 315604806 mer Actinomyces sp. oral taxon 180 str. F0310 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 180; 1.107753984 1.07506355 1.09599726 1.093748413 1.07037717 1.104336257 1.097100225 1.076435705 1.106266034 1.141666844 1.121870989 1.118420533 1.062173204 1.083195873 1.046813952 1.089370663 1.101358281 1.097246459 294815711 amyA Streptomyces clavuligerus ATCC 27064 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces clavuligerus; 0.834637605 0.823265274 0.831156328 0.856525151 0.811651599 0.834192488 0.871587026 0.865884368 0.858563709 0.837001263 0.827514109 0.852713948 0.903020207 119398955 phospholipase_C_fungi Aspergillus clavatus NRRL 1 Carbon Cycling Carbon degradation Phospholipids superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 0.841349014 0.822211284 0.822477742 0.894505064 0.809012354 0.855577566 145219675 aclb Chlorobium phaeovibrioides DSM 265 Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeovibrioides; 1.065553807 1.107630175 1.034298106 1.067410008 1.062547008 1.078025726 1.034023372 1.055290395 1.071488845 1.069701573 1.042111762 1.077944717 1.067456566 1.046560472 1.016539194 1.079902424 1.080609192 1.076299206 226307333 gdh Rhodococcus erythropolis PR4 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 1.010291271 1.024018262 0.981955348 0.982521029 1.010980999 1.015734414 0.987856323 0.993740744 1.004184617 1.046853067 0.929381445 1.00105066 0.990590492 0.990701471 0.998741837 1.002101402 1.013364179 1.013668205 59044729 pectinase (pectate_lyase) uncultured bacterium Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria; 0.803383187 0.82118342 0.889269705 0.836092705 0.92750731 0.91244764 0.87236666 0.817634157 0.853561535 0.854270815 0.867662489 0.880509624 0.956368738 0.913152183 0.89712602 0.889590943 0.889444698 119670562 catechol_b Azoarcus sp. BH72 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 1.021950207 1.063021369 1.009376235 1.018852106 1.001497655 1.048049687 1.003748801 0.987922441 1.103816865 1.007028913 0.963909679 1.046445794 1.012309361 0.964661992 1.057874759 1.002458687 1.036827189 1.037018839 198276562 acetylglucosaminidase Bacteroides plebeius DSM 17135 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides plebeius; 0.94198 0.903168586 0.87613059 0.860279589 1.028359654 0.898009568 0.955025747 0.895421931 0.837541856 0.965169739 0.884423035 0.87518098 0.877411216 0.876550204 0.82941952 0.873640076 0.927865544 373118195 ccmL Lachnospiraceae bacterium 7_1_58FAA Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae; 0.985447437 0.928519585 0.837915886 0.883716838 0.8568163 0.874225172 0.881406225 0.855519863 0.879037692 0.843361209 0.878599519 0.86712705 0.848436042 0.845806827 0.867779411 0.908976847 164455244 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 1.277409151 1.293189408 1.234544186 1.217807415 1.210907867 1.270354371 1.208459266 1.229426985 1.224274501 1.248977139 1.221670357 1.230107688 1.195406124 1.221671664 1.229831199 1.211098623 1.259147205 1.273389772 328528661 fthfs Bacteroides fluxus YIT 12057 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides fluxus; 0.952971449 0.953878626 1.00581539 1.011625762 1.02779337 1.016846124 1.020028686 1.017858359 0.960614977 1.000847422 1.021238225 0.996203081 0.944565279 0.960478218 0.93914164 0.926836298 1.02414042 1.015046158 193224395 cysI Cupriavidus taiwanensis LMG 19424 Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus taiwanensis; 1.364218585 1.399270337 1.343311329 1.356404562 1.372017661 1.392556554 1.361713856 1.351381535 1.329641067 1.347746354 1.357321643 1.349717908 1.353699064 1.343345425 1.326629897 1.365081355 1.370521927 1.335332862 299749836 exoglucanase Coprinopsis cinerea okayama7#130 Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 0.831916434 0.885237075 0.805547226 0.830687847 0.776444623 0.9363811 0.896544228 110180265 cysJ Klebsiella pneumoniae Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella; 1.41977533 1.355939925 1.362132225 1.392991931 1.362550527 1.409676675 1.365618166 1.385565017 1.372874326 1.344530317 1.36598688 1.38473597 1.352862365 1.357832162 1.366897271 1.383450793 1.388279844 1.33457055 269929900 nifh uncultured soil bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.76208647 0.800957791 0.778893544 0.831595676 348172095 ppx Saccharopolyspora spinosa NRRL 18395 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora spinosa; 1.471300573 1.428478971 1.42287863 1.453698426 1.402196295 1.438235658 1.381147475 1.421236517 1.429964186 1.405162227 1.417141923 1.43781286 1.379872837 1.362470076 1.373892224 1.385429079 1.445831781 1.40370913 290472354 amyA Meiothermus ruber DSM 1279 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Meiothermus;species:Meiothermus ruber; 0.829854574 0.868416795 0.820594251 0.826991966 0.828671737 0.809925621 0.871676268 0.860704084 308225845 PRK Oscillochloris trichoides DG6 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Oscillochloridaceae;genus:Oscillochloris;species:Oscillochloris trichoides; 1.122773677 1.03583848 1.050204191 1.134115861 1.109629863 1.068009661 1.099694417 1.145917339 1.098364176 1.094904769 1.080278779 1.142094244 1.062445019 1.089802973 1.108854307 1.122118864 1.069720154 1.063173927 328882652 chitinase Streptomyces venezuelae ATCC 10712 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces venezuelae; 0.965966081 0.986358078 1.015946638 1.026255877 1.003547493 0.977564061 0.918136462 0.950085587 0.979234792 0.962374754 1.021414872 0.953096464 0.975137408 0.935719879 0.926071098 0.942997003 0.980730596 0.995186326 367028915 phenol_oxidase Myceliophthora thermophila ATCC 42464 Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Myceliophthora;species:Myceliophthora thermophila; 0.999773537 0.983904594 0.957852794 1.019400233 1.030511296 0.95012091 1.00769619 1.067780191 0.986303818 0.964949078 0.967093601 1.03501235 0.945672748 0.926026511 0.975820567 0.94372025 0.995474181 0.989686289 337758208 exaa(moxf) Hyphomicrobium sp. MC1 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium; 1.050847796 1.105268144 1.025033538 0.985249783 0.98216489 1.001860938 0.970259537 0.998535042 0.975803828 1.044873881 1.023830772 1.017321334 0.994093786 1.020431206 0.958491333 1.118816163 1.004310889 1.043407977 302532393 chitinase Streptomyces sp. C Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 1.262620351 1.234100432 1.237730463 1.224863557 1.239461947 1.252961583 1.216163374 1.21611414 1.214070922 1.233698228 1.223323385 1.230887351 1.211291886 1.229229194 1.18172681 1.233519255 1.218784394 1.229030479 226347002 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.316255551 1.250938055 1.26194269 1.288595859 1.283092999 1.244953862 1.293356829 1.300307928 1.318190603 1.274751078 1.236777009 1.299532639 1.251183765 1.21144392 1.186180039 1.232148116 1.247382581 1.24923688 337260216 chitinase Myxococcus fulvus HW-1 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus fulvus; 0.874841066 0.83050543 0.868653937 0.912002931 0.819086028 0.873170755 0.833725017 0.833368173 0.880487418 0.871982781 0.832246746 0.870024776 0.786594044 0.82304878 0.837717665 0.89374765 0.901802649 2828018 one_ring_23diox Ralstonia sp. U2 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 0.850459297 0.847448967 0.834146247 0.87988192 0.921158904 0.809213658 0.866293622 0.872861979 0.860899066 0.820061576 0.867520776 0.837940833 0.852006085 0.830391947 0.848370304 0.871612744 116183260 terc Vibrio sp. Ex25 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 0.930399027 0.844136076 0.843911452 0.897037051 0.822412613 0.882670047 0.840565321 0.876677324 0.837029837 0.852850643 0.846244218 0.828286363 0.880295795 0.858172626 118171608 alkb Mycobacterium smegmatis str. MC2 155 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 1.326699509 1.286274056 1.273930054 1.296253788 1.274854932 1.308926447 1.273706821 1.279914043 1.286083758 1.261359227 1.26657701 1.286221366 1.262810969 1.257108239 1.270637459 1.291000207 1.315815164 1.261781518 302897284 pec_Cdeg Nectria haematococca mpVI 77-13-4 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Nectria;species:Nectria haematococca; 1.046470677 1.044837208 1.05991353 1.102706567 1.001759475 1.093580544 1.028711987 1.044336418 1.043251867 1.006008985 1.035514059 1.045613095 0.992813746 1.051018779 1.028460596 1.020794769 1.095068153 1.012815672 336460700 cutinase Mycobacterium avium subsp. paratuberculosis S397 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 1.038753557 1.043208482 1.036856623 1.053842998 1.057481438 1.079900573 1.033826918 1.045123736 1.054212321 1.074862981 1.050730785 1.051990579 0.989730366 1.011599146 1.005187669 0.987038521 1.078652387 1.030200046 78696397 dmsa Bradyrhizobium sp. BTAi1 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.902032083 0.799048535 0.886710822 0.903937693 0.886981216 0.862980639 0.884443913 0.905956202 0.911428626 0.878256553 0.838460536 0.860208747 0.878035783 0.844503568 0.858574838 0.83963528 0.901693144 0.878046129 304395373 trze Pantoea sp. aB Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 0.830316816 0.882171691 0.808471431 0.858277555 0.870713784 0.77243396 0.829368909 0.849213234 0.813704132 0.840897011 0.847338205 0.859548755 407786954 cpna Celeribacter baekdonensis B30 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Celeribacter;species:Celeribacter baekdonensis; 0.878803324 0.966317735 0.802645588 0.886336926 0.836894125 0.853943936 0.823646588 0.877909683 0.840621297 0.830304189 0.854939413 0.834883175 74421045 CsoS2 Nitrobacter winogradskyi Nb-255 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter winogradskyi; 1.09628789 1.107011169 1.080993394 1.068878937 1.084833241 1.097975449 1.067565325 1.073629997 1.059869869 1.08784719 1.070923476 1.09484622 1.073515782 1.064239432 1.059357305 1.084227875 1.08388532 1.091810909 73535158 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.953460719 1.006571402 0.878649402 0.949439043 0.901671329 0.90607815 0.933819518 0.911233381 0.937046088 0.918911403 0.867308167 0.916846615 0.798385646 0.872154103 0.826669051 0.861981479 0.95565132 0.969024353 126738670 alkb Roseobacter sp. SK209-2-6 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 0.996561247 0.995411904 0.933446598 1.035441764 0.938752445 0.921086235 0.944661758 0.98994543 0.989477412 0.935165009 0.916580859 0.985667028 0.918077016 0.906970727 0.862602874 0.95676989 0.972593983 0.978651387 358636015 GAPDH_Calvin Azoarcus sp. KH32C Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 0.915726157 0.963859192 0.892537017 0.930485529 0.939045539 0.939284717 0.940360787 0.923112033 0.906620677 0.947997293 0.921210875 0.921569411 0.895540817 0.913973789 0.832347031 0.888562026 0.913962912 0.952636627 71144796 linb Colwellia psychrerythraea 34H Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Colwelliaceae;genus:Colwellia;species:Colwellia psychrerythraea; 0.82318152 0.846375498 0.932488938 0.835354577 0.877912768 0.832843294 0.824197749 0.868514667 0.812475059 0.828459956 0.808459944 0.851984825 0.801537686 0.829247192 0.916036773 0.830302088 154362232 fthfs uncultured microorganism Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway 0.939588628 0.907434603 0.923408031 0.912205619 0.917312357 0.931622528 0.906688078 0.919651178 0.920308131 0.908081756 0.888093891 0.914464193 0.927315195 0.868157285 0.8739558 0.882369283 0.931538895 194295010 phytase Selenomonas lacticifex Phosphorus Phytic acid hydrolysis NA superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Selenomonas; 0.956282772 0.941130015 0.919523211 0.98266992 0.92090646 0.966298856 0.859799243 0.928825518 0.931571813 0.885682481 0.926635015 0.963509542 0.876931639 0.903993855 0.880967744 0.904326102 0.983037831 0.987844512 383781182 amyA Actinoplanes missouriensis 431 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes;species:Actinoplanes missouriensis; 0.772250611 0.821431392 0.824577827 0.832498898 328929550 arsc Methanosaeta concilii GP6 Metal Homeostasis Arsenic Detoxification superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosaetaceae;genus:Methanosaeta;species:Methanosaeta concilii; 1.071437204 1.052171221 1.062512914 1.086433943 1.037500673 1.052800811 1.046312669 1.06184219 1.069564958 1.051860376 1.045403128 1.067662816 1.035901351 1.045172694 1.023320334 1.052351833 1.062196152 1.040814015 116609586 amyA Arthrobacter sp. FB24 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 0.863631137 0.930440983 0.864183822 0.903655475 0.904096442 0.974348156 0.917264434 0.887837171 0.906665002 0.941242898 0.908331657 0.910895003 0.900107581 0.918492716 0.838088571 0.933814174 0.863243565 0.945963653 256370939 CsoS2 Acidimicrobium ferrooxidans DSM 10331 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Acidimicrobiales;family:Acidimicrobiaceae;genus:Acidimicrobium;species:Acidimicrobium ferrooxidans; 1.183152287 1.182908584 1.128197751 1.165153157 1.128359974 1.174795974 1.114306731 1.129070723 1.140377958 1.141096958 1.141594754 1.15331822 1.133651216 1.122678363 1.09878257 1.136997689 1.167348221 1.179458982 206576715 pcag Klebsiella pneumoniae 342 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 0.873027669 0.882036613 0.910461607 0.871572272 0.814903469 0.857573935 0.835334336 0.830597204 0.844236807 0.795448288 0.888186164 0.879953542 0.872693526 333476795 arsc Marinomonas posidonica IVIA-Po-181 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Marinomonas;species:Marinomonas posidonica; 1.01114161 0.903058088 0.962836453 1.028986671 0.930870301 0.940734181 0.941604289 1.014718727 1.012465344 0.970039718 0.964194717 0.946943588 0.906918194 1.027153015 0.873901314 0.949926752 0.999126511 0.985866805 334842143 GAPDH_Calvin Pseudomonas aeruginosa 152504 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 1.235755952 1.162242197 1.205039553 1.276396631 1.18682115 1.193558934 1.186404981 1.236412669 1.229822974 1.173031934 1.184466586 1.238243499 1.190472746 1.138185141 1.195603296 1.192844882 1.281834796 1.13958212 120589685 B_lactamase_A Acidovorax avenae subsp. citrulli AAC00-1 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax citrulli; 0.935462977 0.967119651 0.942207408 0.953702983 0.952054497 0.977449656 0.939761849 0.913473379 0.928201931 1.002279757 0.94533648 0.944565852 0.926887839 0.966840968 0.891031547 0.916628478 0.921085087 0.980666136 256380160 dehh Actinosynnema mirum DSM 43827 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Actinosynnema;species:Actinosynnema mirum; 1.052812212 1.121546397 1.013082009 1.009009456 1.039949499 1.059645438 1.023930932 1.037766518 1.040711983 0.985400142 0.993390357 1.026293336 1.030169519 1.007541413 0.985804785 1.015505517 1.03414854 1.015973997 384933245 cysJ Bacillus sp. JS Sulfur Reduction NA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 0.86847634 0.921906945 0.841480453 0.875578331 0.902609233 0.845931582 0.886618917 0.855381206 0.851010725 0.872214295 0.839122326 0.864055042 0.825927563 0.856540486 0.85703961 0.845639209 0.859808197 0.914545014 389775230 alkb Rhodanobacter spathiphylli B39 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Rhodanobacter;species:Rhodanobacter spathiphylli; 0.832099225 0.808556833 0.859330733 0.792179512 0.846504302 0.815989529 0.794695158 0.807161526 0.854936335 0.81911196 347368279 one_ring_23diox uncultured bacterium Organic Remediation Aromatics Other aromatics superkingdom:Bacteria; 1.317889065 1.322989807 1.275288798 1.291655639 1.263722835 1.316509789 1.265209382 1.267234973 1.270672622 1.273788574 1.269805224 1.271120409 1.253099138 1.270919236 1.225185307 1.2701913 1.307468483 1.299600312 422314079 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.961122693 0.953511172 0.975074421 1.088326393 0.843312694 0.949177775 0.900722699 0.934466357 0.972734299 0.967324724 0.94511518 0.938787301 0.963021844 0.886493753 0.909336644 0.932660908 0.97015364 0.978238123 149920229 linb Plesiocystis pacifica SIR-1 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Nannocystaceae;genus:Plesiocystis;species:Plesiocystis pacifica; 1.193476896 1.1401487 1.127072925 1.125112709 1.081354203 1.161440146 1.112910502 1.145713171 1.158590155 1.138201909 1.09318076 1.144365609 1.080187487 1.109764483 1.087612465 1.130988731 1.1376655 1.171682895 71915004 endochitinase Thermobifida fusca YX Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Thermobifida;species:Thermobifida fusca; 1.034507393 0.969339292 0.964754149 0.93505458 0.988069923 0.88982143 0.934790918 0.97507773 0.981160122 0.882440189 0.955101765 0.912976032 0.934000233 0.930622596 0.931337974 1.022746141 23330206 hcab Sphingopyxis macrogoltabida Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingopyxis; 0.795441699 0.809740152 0.834144448 0.78381652 0.792735774 0.814060773 0.898960714 0.884466419 288926061 mannanase Prevotella buccae D17 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella buccae; 0.829981293 0.89673379 0.838216285 0.831049432 0.876932591 0.792408955 0.830808865 0.875848999 88909719 exaa(moxf) uncultured Methylocystis sp. GSC357 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylocystaceae;genus:Methylocystis; 0.841936434 0.81568529 0.820590804 0.8240428 0.804658013 0.790428281 0.812715629 0.806170095 0.86083684 0.901647829 0.87538906 0.825398208 0.836592048 0.855351592 149122188 phn Methylobacterium sp. 4-46 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 1.200608624 1.14430346 1.176921464 1.182331671 1.171461858 1.202386775 1.189568785 1.177286061 1.161436849 1.145605069 1.141252029 1.158593774 1.163426191 1.122646184 1.121828943 1.155864493 1.193968978 1.142824266 358456673 pectinase (pectate_lyase) Frankia sp. CN3 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 1.032838023 0.978496143 1.013299088 0.976312238 1.017641007 0.973498498 1.005537569 0.969287637 1.029059868 1.048018211 1.050937277 1.036090677 0.960580293 0.961306304 0.983089643 0.941479777 1.008535727 1.067228669 323273649 ppx Microbacterium testaceum StLB037 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Microbacterium;species:Microbacterium testaceum; 0.839102215 0.853098711 0.856009089 0.924177039 0.844597002 0.822176848 0.857992968 0.848266045 0.829580348 0.819041406 0.908462648 0.828846333 39974471 pme_Cdeg Magnaporthe oryzae 70-15 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 1.254266262 1.240837906 1.257958125 1.256992823 1.232313215 1.269451108 1.223880294 1.225798191 1.267573782 1.220676048 1.234145404 1.232403251 1.208805401 1.193103699 1.205818946 1.210723554 1.269458297 1.214969085 319413929 phenol_oxidase uncultured bacterium Carbon Cycling Carbon degradation Lignin superkingdom:Bacteria; 1.124682484 1.112402339 1.114677738 1.123877102 1.117531247 1.111309005 1.112917297 1.081172567 1.112758238 1.104871662 1.098305001 1.122694555 1.059139809 1.043218158 1.036474911 1.068544311 1.117462909 1.09768328 193086210 soxY Chlorobaculum parvum NCIB 8327 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobaculum;species:Chlorobaculum parvum; 1.181671833 1.165226532 1.14447226 1.157420344 1.137064195 1.163059971 1.101986918 1.152257243 1.141718998 1.149729316 1.139608145 1.149346726 1.11561737 1.122947129 1.075734837 1.105711914 1.169570158 1.164019553 338973618 chnb Bradyrhizobiaceae bacterium SG-6C Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae; 0.817837435 0.831878704 398230061 phn Bradyrhizobium sp. YR681 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 1.072550982 1.00337653 0.996091101 1.092638719 0.997484141 1.053577146 1.016057776 1.046369913 1.069097991 1.024228339 1.004163105 1.02855751 0.998197782 1.02294188 1.005188243 1.012107588 1.07137451 1.02604221 73762984 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.219141942 1.18150145 1.150487686 1.199305745 1.154064022 1.174979791 1.177498838 1.182725112 1.162576753 1.150247526 1.150415163 1.196947939 1.125527701 1.113443535 1.099694956 1.144076805 1.180072787 1.150986877 126731743 amyA Sagittula stellata E-37 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 0.974548067 0.975932808 0.960138247 0.992454655 0.938961524 0.967022623 0.959281848 0.950069934 0.994418154 0.935690209 0.950216292 0.907644449 0.919235058 0.899802502 0.879597451 0.898671967 0.95340098 0.939619551 302406819 pme_Cdeg Verticillium albo-atrum VaMs.102 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticillium;species:Verticillium alfalfae; 1.247256423 1.21689423 1.25055266 1.23024849 1.237247139 1.279109811 1.241818259 1.230865019 1.229353588 1.234404476 1.251301054 1.225873814 1.213378558 1.220440562 1.236522754 1.275877362 1.278111897 1.252297612 151279981 ppk Janthinobacterium sp. Marseille Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Janthinobacterium; 0.845613199 0.8443759 0.816537558 0.86991741 0.838616169 0.868254743 0.838449418 0.81741808 0.842810137 0.799509193 0.840888952 0.820328607 0.894398259 0.840768831 315481242 ppx Campylobacter upsaliensis JV21 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter upsaliensis; 0.773531487 0.841504603 0.786742331 0.817333427 0.825622763 0.838333878 0.815518628 0.803912154 0.853135222 0.813119301 0.840231178 0.85544711 0.82436964 0.865537571 0.862684582 149918733 alginase Plesiocystis pacifica SIR-1 Carbon Cycling Carbon degradation Alginate superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Nannocystaceae;genus:Plesiocystis;species:Plesiocystis pacifica; 1.213839671 1.21784239 1.204019466 1.184725799 1.272421396 1.248969841 1.183785996 1.173367749 1.202583144 1.183338522 1.218418389 1.18860013 1.173848446 1.176090064 1.181553604 1.195295765 1.224486076 1.198373229 99082486 alkb Silicibacter sp. TM1040 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 1.208552789 1.199589038 1.186111179 1.199010398 1.189526769 1.220186806 1.160181819 1.18269017 1.175970026 1.163657292 1.188135687 1.194372635 1.173092872 1.174720351 1.155906543 1.178834901 1.19855004 1.190154646 118168718 nitrilase Mycobacterium smegmatis str. MC2 155 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 0.987515423 1.015765181 1.007678261 1.004113341 0.995648033 1.07058952 0.984260164 0.999148832 1.026257673 1.018107023 1.015294595 0.9894066 0.974888795 0.952932413 0.973627009 0.954546731 1.004013281 1.005203283 403729972 linb Gordonia rhizosphera NBRC 16068 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia rhizosphera; 0.862974277 0.851598801 0.885643607 0.835454253 0.899111775 0.86273255 0.861973059 0.897855113 0.864142159 0.807111363 0.889883794 0.840361805 0.792501037 0.823900905 396926969 terc Rhodococcus sp. JVH1 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 1.07831564 1.043141961 1.061182721 1.053547149 0.988017928 1.033932122 0.99705762 1.054821159 1.0632482 1.053038469 1.023812248 1.050380847 1.001042324 0.99240323 1.008493721 1.018060027 1.045176102 1.040824072 29338098 xyla Bacteroides thetaiotaomicron VPI-5482 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides thetaiotaomicron; 0.863652682 0.89306254 0.81943169 0.865173395 0.911385474 0.889356524 0.85902637 0.90368795 0.855276867 0.826123825 0.87196175 0.878344179 0.823045326 0.848526815 0.887088032 0.871672929 77627612 hbh Corynebacterium cyclohexanicum Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium; 1.150443034 1.162694587 1.123071348 1.164885415 1.112372185 1.110532213 1.123314354 1.151107722 1.137419138 1.119863732 1.101815109 1.151763475 1.085057986 1.057758985 1.075550589 1.107520986 1.147138033 1.103690837 119951727 arsc Arthrobacter aurescens TC1 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter aurescens; 0.896989184 0.90037313 0.890574187 0.908868968 0.925899934 0.969924795 0.900301713 0.92042127 0.926354365 0.887170652 0.888042433 0.894183842 0.814009513 0.879105369 0.818153246 0.867270937 0.897923204 0.926276073 225194131 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.885613674 0.932528068 0.910924588 0.966851481 0.922219796 0.975063604 0.918325645 0.949240243 0.932457035 0.948180981 0.970738384 0.954581358 0.961769541 0.956494104 0.964334881 0.944478552 0.949662014 0.943341526 398351749 chnb Sinorhizobium fredii USDA 257 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium fredii; 1.158993456 1.145547867 1.169120197 1.17397275 1.148618616 1.117759051 1.155834469 1.160629747 1.161236338 1.140064156 1.145667633 1.14475401 1.138513491 1.123519218 1.131876211 1.103240997 1.151431014 1.158305885 319943585 cda Lautropia mirabilis ATCC 51599 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Lautropia;species:Lautropia mirabilis; 0.929213817 0.96007808 0.970366606 0.94969759 0.991440721 1.016424659 0.950151062 0.96283761 0.926781703 0.963554759 0.975470542 0.925388785 0.939616276 0.927973079 0.885351808 0.940233972 0.963287495 0.968179203 167588842 glucoamylase Burkholderia ubonensis Bu Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ubonensis; 1.028375407 0.981202505 1.019885273 1.005611373 0.994183458 0.997806317 0.982626631 0.998589805 1.028532967 0.996329623 0.997294124 0.960650289 0.950956353 0.931579824 0.972295407 0.957122795 1.027074109 1.024570608 353236111 rgl Piriformospora indica DSM 11827 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Sebacinales;family:Sebacinaceae;genus:Piriformospora;species:Piriformospora indica; 0.899880367 0.854303762 0.887311246 0.890072404 0.86377172 0.823877106 0.914560033 0.844427623 0.812868183 0.830289672 0.887456267 0.838136689 319977723 narg Actinomyces sp. oral taxon 178 str. F0338 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 178; 0.969139581 1.000212428 0.915895285 1.006691129 0.927028979 0.974460664 0.908145167 0.929356714 0.953200214 0.980036594 0.930593719 0.933674192 0.895987915 0.936162801 0.881474745 0.916094806 0.984851126 0.97406236 153809348 acetylglucosaminidase Bacteroides caccae ATCC 43185 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides caccae; 0.986537056 0.927305521 0.975293505 0.976006827 0.962490372 0.967116155 1.006765278 0.975432937 0.929104226 0.880079004 0.928732089 0.97841169 0.853082838 0.902272711 0.891707929 0.867980729 0.994180664 1.043939105 339607533 rgl Prevotella dentalis DSM 3688 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella dentalis; 1.204798954 1.244100525 1.137985106 1.240229031 1.23067466 1.230373873 1.238215198 1.19366583 1.167722975 1.257816113 1.179656722 1.139315447 1.21431744 1.20751842 1.054507187 1.201217232 1.191008283 1.244348177 139002966 nifh uncultured nitrogen-fixing bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.869448238 0.877707019 0.938592207 0.899943585 0.849980552 0.852937211 0.851858681 0.917902601 0.8596857 0.874096453 0.844418456 0.863522547 0.895239775 0.854631834 158251624 aps_apra uncultured gamma proteobacterium Sulfur adenylylsulfate reductase NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 1.113018513 1.063685313 1.061329934 1.096527483 1.06847804 1.061090374 1.055972102 1.079689057 1.060447494 1.093235239 1.027036397 1.064080963 1.049638256 0.99997802 1.066273517 1.013441499 1.093815587 1.094038332 161163742 xylanase Sorangium cellulosum 'So ce 56' Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 0.842230899 0.789335371 0.883865173 0.898880697 0.883822554 0.851808616 0.932841445 0.899054796 0.900316609 0.841394716 0.864846798 0.876403418 0.825811638 0.839108837 0.837667609 0.852193739 0.86173616 108799341 chnb Mycobacterium sp. MCS Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 0.809128159 0.801298446 0.863866737 0.837974977 0.84809268 0.815349973 0.827781035 0.846017057 328905852 acetylglucosaminidase Propionibacterium humerusii P08 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium;species:Propionibacterium humerusii; 0.788615874 0.806167689 0.797100333 0.82874797 0.883234961 0.82664454 0.862721068 0.822912548 0.855525721 0.837958268 0.844276329 0.812215621 0.810947205 0.861989741 0.822407441 4098454 nifh Gluconacetobacter diazotrophicus Nitrogen Nitrogen fixation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter; 1.004851022 0.965765198 0.995554553 1.011762174 0.992853162 1.003404764 0.997459425 0.99694158 1.006667868 0.986512775 0.973259355 0.999755771 0.986432274 0.979979389 0.943195455 0.949395817 1.000955654 0.989955748 383461634 amyA Saccharomonospora xinjiangensis XJ-54 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora xinjiangensis; 1.349786944 1.327839928 1.280673113 1.337062969 1.268863971 1.331631725 1.252576764 1.290157988 1.282585185 1.28683303 1.27739758 1.28749883 1.24495794 1.274565416 1.25651518 1.299857836 1.333150071 1.303305644 89512896 nifh uncultured nitrogen-fixing bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 1.344869615 1.30164449 1.263054944 1.313099585 1.294427087 1.287777128 1.295134941 1.301646356 1.327550814 1.299869219 1.306957348 1.292674188 1.272309454 1.242680199 1.261051452 1.269208457 1.286025079 1.288938142 229588899 cmci Pseudomonas fluorescens SBW25 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 0.849647422 0.897443853 0.861112969 0.817686475 0.818616367 0.846984184 0.849619428 0.813946892 0.826340018 0.870563279 0.834662303 283479530 cysJ Erwinia pyrifoliae DSM 12163 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia pyrifoliae; 1.072375096 1.01190928 1.073152306 1.08843227 1.090569915 1.097280156 1.09253452 1.070324773 1.056716448 1.071088838 1.071051013 1.071973127 1.063389642 1.069181422 1.081845143 1.067893726 1.09069171 1.049638712 288962945 nirb Azospirillum sp. B510 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum lipoferum; 1.073436551 1.173950213 1.126705468 1.038552664 1.061528753 1.098785272 1.036782848 1.046690826 1.058614472 1.041685696 1.11221627 1.068735949 1.052755818 1.042887591 1.092831315 1.033803606 1.086750682 1.088949883 311743816 merb Aeromicrobium marinum DSM 15272 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Aeromicrobium;species:Aeromicrobium marinum; 1.127977429 1.073806148 1.070078222 1.055315645 1.09398756 1.102899588 1.111912507 1.056592688 1.076337788 1.067263212 1.085235045 1.064761774 1.04481255 1.079449833 1.026125895 1.033066849 1.085251089 1.11907647 313628090 fosx Listeria ivanovii FSL F6-596 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Listeriaceae;genus:Listeria;species:Listeria ivanovii; 0.811043755 0.916943621 0.771110406 0.824449005 0.857292966 0.805652365 0.815516291 350532589 pula Vibrio rotiferianus DAT722 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio rotiferianus; 0.83222728 0.796163461 0.833342533 0.863547051 0.840242428 0.825845311 0.865537663 0.863901794 0.807040674 0.838351753 0.847826 0.865996665 320094149 amyA Actinomyces sp. oral taxon 178 str. F0338 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 178; 1.194032171 1.169661219 1.157422 1.182573689 1.150901922 1.183948929 1.149686259 1.150669297 1.167477221 1.153033463 1.161073138 1.166953758 1.124104306 1.102345384 1.121335753 1.127166511 1.199620244 1.163318829 300725209 gdh Xenorhabdus nematophila ATCC 19061 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Xenorhabdus;species:Xenorhabdus nematophila; 0.964338454 0.983630792 0.954889194 0.967760585 0.945316039 0.986524048 0.949544336 0.959314137 0.972407248 1.020840769 0.965999557 1.020162505 0.953803947 0.987191304 0.954300164 0.954804201 0.983252498 0.989247466 151592184 urec Methylobacterium extorquens PA1 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium extorquens; 1.313894429 1.277001306 1.262657198 1.292688954 1.257157258 1.267953966 1.243756938 1.241265134 1.272388909 1.245709785 1.250192249 1.276258979 1.229929634 1.24099818 1.216771742 1.257472534 1.288225301 1.225782999 209886424 pgk Oligotropha carboxidovorans OM5 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Oligotropha;species:Oligotropha carboxidovorans; 0.846329206 0.915277342 0.832231096 0.907408586 0.900274467 0.905038151 0.859980091 0.870170285 0.893406277 0.907969028 0.86264739 0.87452981 0.872745979 0.890199781 0.836537981 0.884195585 0.919749047 0.907635245 171059782 exaa(moxf) Leptothrix cholodnii SP-6 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Leptothrix;species:Leptothrix cholodnii; 0.833024438 0.832080198 0.863818726 0.838731363 0.802475303 0.835066631 0.851999938 0.837233599 329118398 fthfs Neisseria bacilliformis ATCC BAA-1200 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria bacilliformis; 1.006291036 0.997912587 0.990349011 1.044261544 0.950406894 1.011059038 0.958318839 0.980196091 1.012155686 0.986929032 0.966085578 1.004114896 0.949622545 0.97361186 0.958150123 0.955362059 1.000261807 0.996023599 89054185 pgk Jannaschia sp. CCS1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Jannaschia; 0.807365049 0.817280482 290570846 chitinase Stackebrandtia nassauensis DSM 44728 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Glycomycetaceae;genus:Stackebrandtia;species:Stackebrandtia nassauensis; 1.223091051 1.21324864 1.190880855 1.206062648 1.178196151 1.200003029 1.163278485 1.170891801 1.19764285 1.178864844 1.201086436 1.2007627 1.175825694 1.175429941 1.15483456 1.186159821 1.212227844 1.185922609 302541395 cmci Streptomyces hygroscopicus ATCC 53653 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces himastatinicus; 1.023253512 1.031608561 0.970912993 1.029297877 0.995612621 1.0345303 0.96958321 1.009607861 1.013469877 0.980667898 0.974897693 1.002001207 0.963131153 0.982610445 0.946581911 0.986543507 1.056898963 1.029388226 403644665 one_ring_23diox Gordonia sp. KTR9 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia; 1.068187484 1.089835909 1.045773193 1.058302211 1.081869485 1.121255214 1.03650647 1.02577569 1.03538023 1.072976537 1.065262586 1.055918721 1.032497032 1.092526196 1.031206718 1.018393745 1.107471104 1.104477548 336320384 amyA Cellvibrio] gilvus ATCC 13127 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas;species:[Cellvibrio] gilvus; 1.139245586 1.115078125 1.099184491 1.144181174 1.086412496 1.129369568 1.076114607 1.079962405 1.08186861 1.070605502 1.090435168 1.10280201 1.086306848 1.072534234 1.065518331 1.093958598 1.124481836 1.100002286 61611869 catb Delftia tsuruhatensis Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia; 0.788977291 0.89578639 0.805813395 0.902505891 0.831958267 0.845835929 0.84581176 0.807086932 0.839245941 0.835905547 0.886179759 0.827419353 0.830548283 0.827479081 1.027595447 0.935786472 110819002 cdh Rhodococcus sp. RHA1 Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 1.04450392 1.044548726 1.012107256 1.011338479 1.039775423 1.048168583 1.031757085 0.985913502 0.984668787 1.034667062 0.999635175 0.993892648 0.978657724 0.977312972 0.895367395 0.956903463 1.037873398 1.029784474 151302358 aps_apra Desulfotomaculum halophilum Sulfur adenylylsulfate reductase NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum; 1.003742373 0.935762992 1.005521417 1.017179978 1.055521189 0.978791604 1.022590223 1.058288292 1.081144079 0.996494256 1.019689293 1.012418625 1.000937956 0.958326328 0.954986568 0.966992823 0.998815528 0.948123186 78062692 amie Burkholderia sp. 383 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 1.166755707 1.130931761 1.110239995 1.122539774 1.119769809 1.137161554 1.097286261 1.116344735 1.130795941 1.092430386 1.09852071 1.130622675 1.092720113 1.068119895 1.102917254 1.12584561 1.13584827 1.078057871 323358164 xylanase Microbacterium testaceum StLB037 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Microbacterium;species:Microbacterium testaceum; 0.82600126 0.869057135 0.837892445 0.877559998 0.886455756 0.916621064 0.90290879 0.887715242 0.878875122 0.93373831 0.890038435 0.901654787 0.82427873 0.895927335 0.923187847 333940501 one_ring_23diox Novosphingobium sp. PP1Y Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 0.872106764 0.790356549 0.93596283 0.861833777 0.83589963 0.832780981 0.887962007 0.91187171 0.994455308 0.839189671 335033895 b_lactamase Agrobacterium sp. ATCC 31749 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium; 1.006621196 0.948255469 0.95313901 0.995954174 0.923502458 0.965381202 0.94412037 1.008742481 1.015828242 0.947501676 0.859525399 0.921557181 0.991447376 0.916018499 0.906611291 0.928789505 1.002623541 0.945811562 293392478 arylest Serratia odorifera DSM 4582 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia odorifera; 1.187715478 1.185097493 1.174911722 1.199437607 1.201155007 1.178948485 1.192865525 1.19496986 1.190646389 1.152611641 1.183893252 1.190203073 1.185205843 1.131172545 1.18541451 1.174050312 1.193475111 1.163069331 393759647 bphF1 Alcaligenes faecalis subsp. faecalis NCIB 8687 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Alcaligenes;species:Alcaligenes faecalis; 1.105557135 1.16318776 1.06985477 1.122142741 1.023738561 1.13072756 1.084721739 1.10820626 1.086367042 1.10729546 1.086935395 1.06560615 1.01424188 1.065514856 0.973743463 1.062106899 1.123260337 1.122870092 297154942 xylj Streptomyces bingchenggensis BCW-1 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces bingchenggensis; 1.271927193 1.272702748 1.248390587 1.223051667 1.186034343 1.254560933 1.176117239 1.198040609 1.211241253 1.21664909 1.224585032 1.214423794 1.179695189 1.212877232 1.163212309 1.197870229 1.233825442 1.2391264 291460244 ppk Oribacterium sp. oral taxon 078 str. F0262 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Oribacterium;species:Oribacterium sp. oral taxon 078; 0.824423735 0.808105608 0.889617454 0.771753356 0.844918913 0.824015046 0.812215306 0.799244067 0.817059278 0.830919511 0.80054488 0.807694189 0.842689684 332377142 fthfs uncultured bacterium Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria; 0.939193379 0.937884728 0.918393019 0.898451918 0.988614747 1.03716166 1.001517256 0.880765745 0.911034604 1.001056818 0.994024238 0.916932754 0.95483583 1.005510101 0.847824122 0.977517635 0.959118152 0.964709434 336117387 amyA Microlunatus phosphovorus NM-1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Microlunatus;species:Microlunatus phosphovorus; 0.904580266 0.881805544 0.889147358 0.894595246 0.870332951 0.896846309 0.882723307 0.854468066 0.864524435 0.940926914 0.911216407 0.899804886 0.840971204 0.847564801 0.851624215 0.842790162 0.941079228 0.920753068 197209502 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.766903949 0.788702463 300785091 amyA Amycolatopsis mediterranei U32 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 1.321082703 1.306439004 1.294890382 1.342240522 1.312974773 1.323553738 1.301961218 1.324181289 1.30502413 1.282137317 1.281445985 1.325895656 1.296108418 1.27815581 1.285592635 1.308212346 1.318863204 1.284710796 157408796 mdlc Methylobacterium populi BJ001 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium populi; 1.166431426 1.095296998 1.087612666 1.076315467 1.081925447 1.097825056 1.075638552 1.056753811 1.099542163 1.067577577 1.082676106 1.084367972 1.078773294 1.02954189 1.05489042 1.02626771 1.111771823 1.082369146 77820042 nirs uncultured organism Nitrogen Denitrification NA 1.227006027 1.218078938 1.215517115 1.230055557 1.235129668 1.23466894 1.206820101 1.196126924 1.21628216 1.218814262 1.209582778 1.217845049 1.230220627 1.206105256 1.189190449 1.225484529 1.234862475 1.197393771 117992469 nitrilase Burkholderia phytofirmans PsJN Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 0.845914984 0.850426108 0.826928189 0.872626484 0.82285353 0.831060069 0.824750187 0.832667382 0.820153555 0.842191427 0.860636219 0.824145398 0.856146897 0.818990321 0.870811523 0.858324475 323382685 catechol Burkholderia sp. CCGE1001 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 1.109271157 1.090576223 1.071680767 1.094826873 1.098925042 1.111684091 1.09178182 1.103103863 1.0958791 1.073874024 1.082281757 1.093787836 1.082191136 1.060491548 1.05501938 1.080488041 1.098596538 1.089760073 384219391 chnd Bradyrhizobium japonicum USDA 6 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 0.995073495 1.013939242 0.990687962 0.996302901 0.987329081 0.992020631 0.991747378 0.99611873 1.007306154 0.973272515 0.999274467 0.994497205 0.932717418 0.958555705 0.932467404 0.940621816 0.973775636 1.029817638 83718203 poba Burkholderia thailandensis E264 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia thailandensis; 0.88831647 0.927005177 0.934564655 0.901747096 0.919657528 0.91961733 0.879728669 0.848875551 0.882130877 0.904256457 0.883107123 0.891290439 0.905913296 0.906889432 0.913978985 0.893131998 0.921511798 0.930337602 188532464 cysJ Erwinia tasmaniensis Et1/99 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia tasmaniensis; 0.94827419 1.019768617 0.987062721 0.947852996 0.871074409 0.925662644 0.888124737 0.883761594 0.95519841 0.977130824 0.925103179 0.9471424 0.91329686 0.870770066 0.895072645 0.873912351 0.954787393 0.969378182 164425530 rgl Neurospora crassa OR74A Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Neurospora;species:Neurospora crassa; 1.123896668 1.130863458 1.137652896 1.11559587 1.133012737 1.115581569 1.094680989 1.119988101 1.095480408 1.125037623 1.097872306 1.071205416 1.056483049 1.062202823 1.130524712 347820861 pcpe Verminephrobacter aporrectodeae subsp. tuberculatae At4 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter aporrectodeae; 0.961363264 1.019502215 0.928241335 0.950731167 0.960651074 0.962780421 0.923520483 0.890291026 0.948971524 0.965799581 0.902355205 0.945738114 0.942788135 0.94278124 0.933241992 0.945692146 0.985115506 0.991541584 291197012 exoglucanase uncultured fungus Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi; 0.780782931 0.825568013 0.819688664 0.820721578 0.81318849 0.809905861 0.839350294 0.809344219 0.812146729 355357326 nifh Desulfotomaculum gibsoniae DSM 7213 Nitrogen Nitrogen fixation NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum gibsoniae; 0.869029129 0.871869606 0.832662248 0.873434032 0.872899754 0.885840307 0.901307452 0.921695341 0.905776212 0.847176603 0.886112022 0.861431474 0.85222271 0.783872269 0.83885605 0.840367636 95109588 cysJ Pseudomonas entomophila L48 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas entomophila; 0.914585571 0.863985043 0.912488247 0.949705023 0.927789557 0.915758136 0.876920237 0.943758517 0.944039677 0.88195179 0.890139737 0.907635344 0.820971091 0.814650542 0.834328801 0.881605756 0.907807793 0.84959007 146404225 FBPase Bradyrhizobium sp. BTAi1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 1.330851719 1.28552241 1.25542622 1.310593865 1.266001355 1.299491346 1.27136831 1.248960991 1.276767423 1.262442691 1.271882635 1.292840198 1.268806694 1.241196915 1.247677852 1.268547299 1.296553478 1.251502945 124267460 xylj Methylibium petroleiphilum PM1 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 0.991792551 0.983017584 0.973630242 0.972681795 0.982303816 0.974136126 0.992833805 0.96091821 0.963817278 1.006422762 0.960079437 0.972661248 0.973828558 0.931671378 0.869375988 0.900630351 0.986004916 1.045039115 251753287 alginase Pectobacterium carotovorum subsp. carotovorum PC1 Carbon Cycling Carbon degradation Alginate superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium carotovorum; 0.83189999 0.793071959 0.826901567 0.837575873 0.808811466 0.789587672 0.827186642 0.864986829 0.848348802 27349338 linb Bradyrhizobium japonicum USDA 110 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 1.031738844 1.015452891 1.041595943 0.995874836 0.993271657 1.019164931 0.969482199 0.972615932 1.012533758 1.015518947 1.014090467 1.018630702 0.985898056 0.995413177 0.977021486 1.015257755 1.010763693 1.025110679 307727622 pcpe Burkholderia sp. CCGE1003 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 1.123392174 1.101756059 1.061288681 1.103918729 1.027223579 1.112396361 1.028904301 1.074267812 1.088805338 1.086560739 1.057967476 1.051828464 1.025493977 1.063844054 1.024819348 1.068696795 1.128036937 1.123368044 431824269 nosz Pseudomonas stutzeri RCH2 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 1.070820542 1.092647712 1.042284956 1.078480259 1.085070179 1.036593729 1.012665351 1.030656163 1.039629826 1.015537198 1.005602738 1.041731235 1.067117165 0.961948292 0.942357936 0.971858604 1.085801232 1.05843199 322385707 pula Streptococcus cristatus ATCC 51100 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus cristatus; 0.990171623 0.985740852 0.951706639 0.997004719 0.967717311 0.981493446 0.981584219 1.007149556 0.984618048 0.970679681 0.982441696 0.985902303 0.98627638 0.967519334 0.942089382 0.979065915 0.972336716 0.993422536 196256088 urec Cyanothece sp. PCC 7822 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 1.009464478 0.893028311 0.998154812 1.041349571 1.047299815 0.994122953 1.05845535 1.035128794 0.945113279 0.957011722 0.942239213 0.993572364 1.011934941 0.941941425 1.016315892 1.057086401 1.050268382 1.009058407 152970670 mhpb Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 1.394438058 1.415023142 1.393931384 1.424083167 1.368584558 1.430666367 1.371631014 1.400185781 1.412467663 1.385732514 1.375839256 1.387445029 1.360925421 1.363236383 1.354448971 1.368736937 1.452531748 1.407002482 157060169 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.066334123 1.042199127 1.054149859 1.063768384 1.03616627 1.068236332 0.998552234 1.027637449 1.061803113 1.052734873 1.027693676 1.041235607 1.013184687 1.020472565 0.985743994 0.999888369 1.053750065 1.040657092 323135669 exaa(moxf) Methylocystis sp. ATCC 49242 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylocystaceae;genus:Methylocystis; 1.425103401 1.352146668 1.376264165 1.392235795 1.378430882 1.374718086 1.390189603 1.401041964 1.371352352 1.337248222 1.361280939 1.381300195 1.344789805 1.295969245 1.326528297 1.333171692 1.383466915 1.32041787 17976753 GAPDH_Calvin Pseudanabaena sp. PCC 6903 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Pseudanabaena; 1.074308797 1.067543613 1.058051309 1.099693029 1.050817405 1.013162283 1.040115384 1.08083855 1.062780615 1.057248741 1.056800484 1.091509356 1.017621582 1.032324241 1.048814952 1.039049148 1.039099644 1.031781152 319895727 cellobiase mine drainage metagenome Carbon Cycling Carbon degradation Cellulose 1.05579055 1.002529227 1.013626817 1.044155783 0.95574634 1.015374608 0.971880856 1.014024316 1.043080402 1.017468534 1.010227923 1.024530254 1.029869324 0.985783702 0.996687976 0.989131096 1.045302552 1.045425283 269837121 amyA Sphaerobacter thermophilus DSM 20745 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Chloroflexi;class:Thermomicrobia;order:Sphaerobacterales;family:Sphaerobacteraceae;genus:Sphaerobacter;species:Sphaerobacter thermophilus; 1.255446506 1.218384592 1.172725015 1.220534379 1.209483131 1.226155928 1.184791457 1.14767627 1.194268082 1.195841706 1.194216893 1.207608779 1.211263993 1.15498137 1.145855224 1.191453458 1.217604477 1.17655378 422314209 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.770850113 0.801858294 0.809787336 0.816055463 0.850289042 0.862316713 0.85348274 0.813637356 0.830860946 0.858044004 0.834164406 0.771216685 0.790355796 0.832047016 353247761 axe Piriformospora indica Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Sebacinales;family:Sebacinaceae;genus:Piriformospora; 0.887289752 0.857070375 0.809929097 0.91598736 0.803650783 0.892548642 0.866868042 0.86431718 0.827405026 0.869546484 0.843279154 0.898975939 0.914653708 374369268 arylest Cupriavidus basilensis OR16 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus basilensis; 0.915606223 0.877281908 0.82475706 0.937702047 0.835448584 0.854723294 0.932587404 0.927193672 0.868572234 0.833040648 0.892464789 0.841582013 0.882232592 0.86445019 0.958669954 0.849987138 212706782 mdlc Providencia rustigianii DSM 4541 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia rustigianii; 1.069706046 1.077538057 1.076022174 1.065514414 1.070898311 1.122214022 1.044956322 1.076034105 1.060811944 1.086138714 1.091623216 1.074241401 1.072919747 1.028284667 1.039789402 1.026441691 1.091535746 1.074832011 188583366 soxY Methylobacterium populi BJ001 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium populi; 1.393746489 1.42044911 1.42176826 1.429782949 1.37919846 1.437774823 1.399653056 1.406984625 1.335224097 1.397704446 1.411493053 1.406134012 1.376042507 1.356537749 1.360459189 1.384792497 1.45375173 1.400179177 326950263 amyA Pseudonocardia dioxanivorans CB1190 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Pseudonocardia;species:Pseudonocardia dioxanivorans; 0.881420222 0.895265647 0.934959706 0.921926739 0.882774686 0.901043821 0.887553282 0.871873775 0.885575606 0.931469918 0.921047026 0.924177568 0.820396687 0.883308275 0.799122423 0.830751365 0.846954452 0.842421781 292669956 fthfs Selenomonas noxia ATCC 43541 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas noxia; 1.033735145 1.037734266 0.995741763 1.022829838 1.015430345 1.056402193 1.042023066 1.0460452 1.004697102 1.053094569 1.030709319 1.034083322 1.039507354 1.037983837 1.01981475 1.032744659 1.02378718 1.033035846 268638397 alkb Gordonia sp. CC-S5a Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia; 1.339338456 1.340246889 1.302309483 1.298802992 1.294642921 1.352510243 1.302746983 1.303760372 1.294085351 1.317507493 1.28756389 1.311809734 1.284034682 1.294547498 1.262032086 1.289990384 1.31555219 1.325337118 307129095 alginase Dickeya dadantii 3937 Carbon Cycling Carbon degradation Alginate superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya dadantii; 1.175371438 1.129618435 1.121439323 1.141636056 1.090211868 1.111800089 1.107073303 1.142317375 1.133438595 1.118256836 1.118237101 1.142101918 1.084194348 1.09303785 1.086041731 1.093397226 1.133363679 1.1402843 383339802 amyA Mycobacterium phlei RIVM601174 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium phlei; 0.978482875 0.955016139 0.970905475 0.943460451 0.954151271 0.981693721 0.943485457 0.973064191 0.987714521 0.926239007 0.893926719 1.013440522 0.881141158 0.906128059 0.896851076 0.879662619 0.952965442 0.968416874 186470743 FBPase Burkholderia phymatum STM815 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 0.837972492 0.850261484 0.831268395 0.818442828 0.817608874 0.800166119 0.823379714 0.828241679 0.88442571 0.913821446 0.836418921 0.837948185 0.824561941 212711131 terc Providencia alcalifaciens DSM 30120 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia alcalifaciens; 1.029807067 1.031955752 1.031627886 1.069760759 1.013110688 1.021879084 1.016800294 1.007027228 1.032653273 1.016624135 0.99280849 1.070541557 0.970225812 0.972408073 0.976800541 0.958025873 1.021829321 0.966739458 242778239 cellobiase Talaromyces stipitatus ATCC 10500 Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 1.007942559 1.02475541 1.001573512 1.019215676 1.033058253 1.015360897 1.012830299 1.003754122 0.965745167 0.977710495 0.980940611 1.005297983 0.991477559 0.963817803 0.940456919 1.007415654 1.007506912 0.985620457 399987345 chnc Mycobacterium smegmatis str. MC2 155 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 0.993145243 0.989667846 0.987076433 1.013739143 0.98803506 0.996288313 0.991602607 0.973383984 0.986031029 1.005468289 1.005447177 0.994913247 0.940605787 0.964538165 0.853944748 0.941182504 1.010826563 1.017248012 33391363 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.90924832 0.928840345 0.843878972 0.907898551 0.834661432 0.873321594 0.831260754 0.857155559 0.918420647 0.877875395 0.876446918 0.875526928 0.830954434 0.84644028 0.843653712 0.857841344 0.924916753 0.932009435 77461684 ppx Pseudomonas fluorescens PfO-1 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 0.923389439 0.956807226 0.941922316 0.992869035 0.975552027 0.911426635 0.976847457 0.979114438 1.062562638 0.906117249 0.91401856 0.922005257 0.89068395 0.904861148 0.918361127 0.910217708 0.942028544 0.90804706 358071669 pcpe Burkholderia cenocepacia H111 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cenocepacia; 0.855070082 0.832236225 0.855064385 0.815924546 0.855394627 0.846371309 0.862044331 0.819415315 0.805955789 0.846268266 0.832945021 0.875681582 0.837232283 0.793879774 0.823281639 365847180 endoglucanase Yokenella regensburgei ATCC 43003 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yokenella;species:Yokenella regensburgei; 0.796916527 0.821157984 0.790125753 0.809766971 0.807770948 0.839718124 0.800182075 220907037 CsoS1_CcmK Cyanothece sp. PCC 7425 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 0.79303556 0.781893136 0.814341407 0.799132149 0.790160949 229818349 amyA Bifidobacterium angulatum DSM 20098 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium angulatum; 0.945523178 0.959690155 0.987080437 0.943199362 0.895880784 0.985205907 0.942943904 0.974688404 0.963460843 0.958321459 0.901979023 0.967338807 0.880159233 0.902785889 0.884577054 0.86524072 0.968696206 0.978621494 77378747 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.099840041 1.087987352 1.124731044 1.097495931 1.11291501 1.155032168 1.089687668 1.029247207 1.090844832 1.084673036 1.103066999 1.075060172 1.087401073 1.072011917 1.116671365 1.058214124 1.110395716 1.112026116 156231945 dehh109 Roseiflexus castenholzii DSM 13941 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus;species:Roseiflexus castenholzii; 0.819217472 0.801610911 149811768 nifh Roseobacter sp. AzwK-3b Nitrogen Nitrogen fixation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 0.935610303 1.014008073 0.85120877 0.992474012 0.907708811 0.961971116 0.919553366 0.824316846 0.903935171 0.981022672 0.885603738 0.904407989 0.897330351 0.87426957 0.875955926 0.935597998 0.96434706 66801927 narg unidentified bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.981769781 1.01167429 0.982622806 0.99498678 1.041120381 0.972090155 0.977914782 0.999344597 0.975250994 0.972432249 0.987999234 1.094529581 0.960122566 0.956246014 0.961984797 0.971547469 0.985375306 0.968873235 301111093 pectin_lyase_Oomycetes Phytophthora infestans T30-4 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;order:Peronosporales;genus:Phytophthora;species:Phytophthora infestans; 0.934655158 0.907381862 0.93460675 0.926360667 0.954669671 0.946931598 0.939206025 0.894868695 0.918477571 0.961116563 0.935594855 0.91866545 0.935492553 0.931557612 0.839369573 0.84368575 0.925056828 0.934687592 94496202 phytase Sphingomonas sp. SKA58 Phosphorus Phytic acid hydrolysis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 1.10110311 1.117078015 1.119738155 1.115293207 1.127260005 1.13199391 1.085916058 1.083145372 1.113192067 1.06858244 1.082603474 1.071601745 1.07256651 1.047385169 1.102875239 1.069799055 1.160693761 1.13719162 433675684 nosz Natronococcus occultus SP4 Nitrogen Denitrification NA superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Natronococcus;species:Natronococcus occultus; 1.146806885 1.126766036 1.133731829 1.077586605 1.143072526 1.146780512 1.103919356 1.091295352 1.109234615 1.117951389 1.13812375 1.094487722 1.114254631 1.135149929 1.103390246 1.074373056 1.106060887 1.138163286 384102122 amyA Rhodococcus imtechensis RKJ300 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus imtechensis; 1.29496297 1.288112685 1.267452514 1.263681233 1.227002563 1.281856272 1.231434954 1.264611516 1.258618862 1.260324305 1.259824 1.256085385 1.209297027 1.236078821 1.197965911 1.260962882 1.284185621 1.281298703 344317092 adpb Streptomyces sp. SirexAA-E Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 1.079711789 1.054026917 1.055105226 1.057107153 0.940019891 0.990173828 0.968938945 1.095162731 1.068669401 1.026544096 0.997240036 1.04110866 0.987352545 0.968435714 0.949621381 0.969449554 1.061264412 1.05472354 60593164 dsrB uncultured prokaryote Sulfur sulfite reduction NA 0.864976347 0.960899866 0.915296045 0.912173329 0.870811659 0.956597705 0.890912565 0.888632711 0.866622147 0.880524341 0.901179299 0.878503811 0.86238917 0.884020675 0.842507936 0.881318054 0.871630393 0.876391321 238934062 phospholipase_B_fungi Lachancea thermotolerans virulence degradation NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Saccharomycetaceae;genus:Lachancea; 1.050272417 1.05482632 1.031542468 1.017695283 0.973284497 1.014211996 1.014112155 1.041624673 1.033933497 1.053817346 0.954963043 1.014311359 0.926611796 0.980373799 0.886317965 0.971820033 0.975546247 0.995833842 343917113 phytase Thiorhodococcus drewsii AZ1 Phosphorus Phytic acid hydrolysis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiorhodococcus;species:Thiorhodococcus drewsii; 1.245486467 1.26392258 1.250606358 1.239349356 1.266849302 1.276967423 1.225471024 1.217378406 1.23540623 1.181093779 1.185150347 1.195051168 1.233996494 1.183783958 1.205183088 1.224617558 1.273911947 1.229436925 337269436 ppx Mesorhizobium opportunistum WSM2075 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium opportunistum; 0.774954513 0.862060304 0.86488937 0.811994931 0.829810187 0.870647052 149142804 GAPDH_Calvin Roseovarius sp. TM1035 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 1.028401592 1.004994074 1.014189661 1.052402165 1.013851167 1.000696822 1.017636997 1.013726299 1.063263992 1.004673191 1.010033985 1.051188334 0.987613026 0.964095028 1.002657163 0.983085324 1.022212999 1.070074385 293602149 cysI Achromobacter piechaudii ATCC 43553 Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter;species:Achromobacter piechaudii; 0.863411379 0.901744227 0.862326204 0.901769883 0.874437465 0.850586658 0.842703308 0.83117279 0.87208716 0.873995828 0.855164674 0.80222418 0.880597596 0.877129965 330688056 aoxb uncultured bacterium Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 1.072955507 1.027399702 1.058028268 1.13969005 1.082706973 1.01566201 1.067282953 1.056019618 1.056924764 1.064991679 1.08013114 1.108311903 1.017383215 1.022944641 1.015498191 1.04405038 1.089610771 1.067898322 115374468 pcpb Stigmatella aurantiaca DW4/3-1 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 1.142079087 1.163933695 1.156632175 1.122341337 1.148644328 1.177965871 1.115517789 1.131560417 1.112515184 1.122343615 1.117890818 1.122539895 1.116428755 1.113211504 1.146050316 1.116279135 1.182549912 1.181170466 72132941 amyA Micrococcus luteus Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Micrococcus; 0.81754542 0.839697974 0.843116521 0.855253831 116181558 endochitinase Chaetomium globosum CBS 148.51 Carbon Cycling Carbon degradation Chitin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 0.858252432 0.805924487 0.84150135 0.795048834 0.818103959 52425291 amyA Mannheimia succiniciproducens MBEL55E Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Basfia;species:Mannheimia succiniciproducens; 0.92437623 0.915988345 0.86529332 0.969513463 0.882127706 0.889974283 0.888261487 0.876217888 0.90488368 0.917553921 0.858478683 0.901734584 0.853348734 0.820912345 332377264 fthfs uncultured bacterium Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria; 0.97756129 0.905133842 0.940081655 0.999387357 0.9539024 0.94384908 0.962620897 1.003501997 1.008111332 0.925436988 0.913702931 1.004343769 0.942051273 0.933972991 0.930403419 0.953934047 0.98557435 0.932955983 323528694 vdh Burkholderia sp. CCGE1001 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 0.801391872 0.780706449 302036206 AcnA Candidatus Nitrospira defluvii Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle superkingdom:Bacteria;phylum:Nitrospirae;class:Nitrospira;order:Nitrospirales;family:Nitrospiraceae;genus:Nitrospira; 0.826981457 0.85385763 0.874918893 0.823256807 0.857379442 0.867031183 0.809082175 0.830452324 0.82837157 0.788671793 0.810651929 0.846906044 0.875258285 407977227 xylg Nitratireductor indicus C115 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Nitratireductor;species:Nitratireductor indicus; 0.879033447 0.912519539 0.880003969 0.869179885 0.905046872 0.897183623 0.881416961 0.889024647 0.848949696 0.850218278 0.863628546 0.817867718 0.822233327 0.831962199 0.89619873 0.906352103 0.947538251 312878852 arsc Aminomonas paucivorans DSM 12260 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Synergistetes;class:Synergistia;order:Synergistales;family:Synergistaceae;genus:Aminomonas;species:Aminomonas paucivorans; 0.814187174 0.800995398 0.820080919 0.837583986 0.818509284 0.844987531 0.84984385 0.816469848 0.81956745 148240404 endochitinase Synechococcus sp. WH 7803 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 0.813319114 0.792383104 0.791821934 0.826775419 0.79316917 0.802719966 0.826166016 0.790817244 0.840817068 407276656 mult_ring_12DiOx Rhodococcus sp. P14 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 1.102582019 1.075796136 1.108632107 1.056600235 1.053234021 1.091911583 1.044704823 1.024043737 1.033290432 1.079716607 1.084661962 1.028699321 1.007785265 1.0187251 0.990466852 0.966657526 1.05112155 1.153192252 75992426 dxna Terrabacter sp. DBF63 Organic Remediation Aromatics Heterocyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Terrabacter; 1.053756714 1.005004424 1.070129478 1.008544334 1.02227989 0.934474395 0.89341906 0.955870217 1.017735186 0.995153349 0.99875315 0.990140754 1.007983035 0.978929165 0.97717086 0.944858 1.045174358 0.997141674 269098612 amyA Sanguibacter keddieii DSM 10542 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Sanguibacteraceae;genus:Sanguibacter;species:Sanguibacter keddieii; 1.063817592 1.049264887 0.988795495 1.070011441 0.996443473 1.014792979 1.010478037 1.022134217 1.057365448 1.043313493 1.003774492 1.044521011 0.976549241 0.973283089 0.973175148 1.010277698 1.056772803 1.049839091 167644275 amyA Caulobacter sp. K31 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 1.035011494 1.002828542 1.070214006 1.04163278 1.060198396 1.103466186 1.081801793 1.057236262 1.002258031 1.033859854 1.032467251 1.035574549 1.000852422 1.015762337 1.005947501 0.999641773 1.065952285 1.085719836 383455507 chitinase Corallococcus coralloides DSM 2259 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Corallococcus;species:Corallococcus coralloides; 0.767206502 0.794550548 0.770830471 0.817143292 114339985 PRI Maricaulis maris MCS10 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Maricaulis;species:Maricaulis maris; 0.939192134 0.971054514 0.885464943 0.967807607 0.917142458 0.881029919 0.928330153 0.954405463 0.9442319 0.96894042 0.887066669 0.958909065 0.885633205 0.914276357 0.899030422 0.914354741 0.89908857 0.944296677 296426155 phenol_oxidase uncultured bacterium Carbon Cycling Carbon degradation Lignin superkingdom:Bacteria; 1.146605316 1.165126474 1.121382036 1.158745506 1.121490458 1.164149326 1.101599405 1.09975472 1.095044696 1.118915658 1.098336035 1.138962774 1.113940733 1.116267655 1.10155773 1.129766176 1.16297616 1.170161543 383367422 xylj Geobacillus thermoglucosidans TNO-09.020 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus;species:Geobacillus thermoglucosidasius; 0.959973125 0.997183717 0.921036334 0.984386426 0.914976134 0.98039622 0.866797157 0.862254158 0.938148569 0.981266822 0.919108008 0.944619042 0.923948912 0.892581855 0.939375151 0.979622926 1.015594691 85082547 phenol_oxidase Neurospora crassa OR74A Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Neurospora;species:Neurospora crassa; 0.84863037 0.853291451 0.85940902 0.877414974 0.858921699 0.837575205 0.828342706 0.829576246 0.845218216 0.876847912 375131783 chitinase Vibrio furnissii NCTC 11218 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio furnissii; 0.917213247 0.842886718 0.892349907 0.880553929 0.923527492 0.865581563 0.860784421 0.830750808 0.883692187 0.871448761 0.820729106 0.846275486 0.879329598 0.848218502 0.837060903 0.854031906 0.903933789 0.915626919 299006976 mg_chelatase Chromera velia Secondary metabolism Pigments Chlorophyll superkingdom:Eukaryota;phylum:Chromerida;genus:Chromera; 0.814287741 0.815547023 0.821027642 0.813171067 0.819731987 0.840661933 0.828421588 156231504 MMCE Roseiflexus castenholzii DSM 13941 Carbon Cycling Carbon fixation 3-hydroxypropionate bicycle superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus;species:Roseiflexus castenholzii; 0.849204043 0.858935918 0.918483392 0.906398793 0.878809513 0.886120559 0.831564874 0.920742051 0.847106399 0.850980913 0.809062807 0.823520494 0.867750486 0.915674831 288957109 napa Azospirillum sp. B510 Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum lipoferum; 0.904651969 1.017689315 0.895657218 0.921341775 0.844430993 0.876878737 0.851727795 0.864619272 0.909818917 0.913900833 0.883928601 0.88807091 0.823133594 0.876841743 0.80811402 0.824273849 0.925312719 0.923966413 292654327 urec Haloferax volcanii DS2 Nitrogen Ammonification NA superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloferax;species:Haloferax volcanii; 0.911064091 0.910462483 0.897401752 0.919832434 0.934548013 0.893000934 0.93594557 0.921217775 0.887675497 0.887313007 0.882687965 0.88801068 0.834251447 0.84055469 0.82255053 0.8866112 0.888347145 0.922463613 359398879 one_ring_23diox Novosphingobium pentaromativorans US6-1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium pentaromativorans; 0.889230593 0.890756652 0.891452702 0.895972072 0.902724215 0.930905775 0.948706121 0.828060483 0.888847351 0.917615739 0.907859103 0.869234383 0.858844236 0.87405755 0.889564507 0.927401236 0.903511885 0.896688493 76801449 nirk Natronomonas pharaonis DSM 2160 Nitrogen Denitrification NA superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Natronomonas;species:Natronomonas pharaonis; 1.07521714 1.11744838 1.049531097 1.044573561 1.048821633 1.119730015 1.0708241 1.025152409 1.026751748 1.095595327 1.053526211 1.035056915 1.03524833 1.057630352 1.017504823 1.048004482 1.092853817 1.09301785 373852473 alginase Opitutaceae bacterium TAV5 Carbon Cycling Carbon degradation Alginate superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 0.886239614 0.871862197 0.888849784 0.91573712 0.843359494 0.850696506 0.867427544 0.898414421 0.858673923 0.843146203 0.824617066 0.827502712 0.869899645 0.905104138 0.864903976 111610916 urec Verminephrobacter eiseniae EF01-2 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 1.059475819 1.004513017 1.013727621 1.03852659 0.940895287 0.986898425 0.936726346 1.001033657 1.017111917 0.979909099 0.985760534 0.979076194 0.977512254 0.986714122 0.911124391 0.960043807 1.028904423 1.012101861 289172475 gdh Xenorhabdus bovienii SS-2004 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Xenorhabdus;species:Xenorhabdus bovienii; 0.792136477 0.840961906 0.865710371 0.820175806 0.82429547 0.826896253 0.814464004 0.871530446 0.856179494 0.838153563 0.803239318 0.837242975 357020921 amyA Mycobacterium thermoresistibile ATCC 19527 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium thermoresistibile; 0.873567528 0.846301937 0.894399178 0.939278619 0.962325593 0.892155678 0.916542787 0.950262107 0.919091248 0.919616395 0.914071659 0.926875473 0.888349009 0.833720619 0.82753154 0.823676666 0.918582589 0.874554018 289768508 chitinase Streptomyces lividans TK24 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces lividans; 0.872221752 0.881781242 0.850356993 0.866200711 0.860474411 0.856376828 0.870189027 0.853244106 0.878453895 0.849745494 0.854624978 0.839133021 0.829891212 0.851728826 0.79482102 0.948464824 112462395 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.192351528 1.174451276 1.163792212 1.209496951 1.173244947 1.17400713 1.176774418 1.178428816 1.172678657 1.197791738 1.172231942 1.187433791 1.156390336 1.139981855 1.153532662 1.184281507 1.181075368 1.171359857 392721663 pchcf Novosphingobium sp. Rr 2-17 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 0.864137839 0.788637785 0.954833357 0.957918745 0.819533904 0.850653198 0.797570727 0.816930436 0.892280494 0.840861256 0.905980965 0.890457511 383624935 aoxb Halobiforma lacisalsi AJ5 Metal Homeostasis Arsenic Detoxification superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halobiforma;species:Halobiforma lacisalsi; 0.968375701 0.90495725 0.907758933 0.908807481 0.935726565 0.989098191 0.931974545 0.900939044 0.936054077 0.951844258 0.89938583 0.925668667 0.882031106 0.852473493 0.83501149 0.888712618 0.958745951 0.966865467 144905457 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.003147011 1.002758127 1.019832236 0.991016279 0.938358025 0.976264548 0.939637421 0.994469664 0.978619982 0.959144137 0.995328479 0.987884043 0.960933579 0.961188328 1.061096278 0.941544324 0.993476377 0.994522049 87281209 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.040675263 1.128796362 1.004909494 1.162996392 1.051812789 1.061037699 1.065915626 1.001177615 1.040511801 1.027698243 1.014625211 1.093403406 1.004529812 1.010037808 0.920468758 1.013716438 1.048622982 1.011733183 77956457 nrfa Yersinia bercovieri ATCC 43970 Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia bercovieri; 1.081240476 1.112340143 1.075661791 1.08117465 1.059915858 1.117809642 1.073132213 1.071327566 1.072245362 1.084173844 1.051346365 1.078266231 1.077179743 1.050880508 1.051588504 1.088074168 1.10886028 1.092434148 150397851 pgk Sinorhizobium medicae WSM419 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 0.75528336 0.790991716 0.810095759 0.783367438 0.834526247 0.822960683 0.830641691 0.80157989 0.79200814 359837964 ara Actinoplanes sp. SE50/110 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes; 0.878553191 0.895418311 0.844500476 0.833184089 0.873039503 0.824794935 0.849720088 0.853418512 0.907913004 0.816192902 0.860291782 0.876421341 0.869533265 0.868764881 399238050 arylest Halogranum salarium B-1 Organic Remediation Aromatics Other aromatics superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halogranum;species:Halogranum salarium; 0.819212539 0.783869971 0.785415595 0.830558687 223585872 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.875636906 0.855670615 0.8419781 0.851116116 0.853767544 0.868808125 0.802614353 0.833448452 0.816609306 0.871232231 0.853813217 0.895135494 0.898307896 221534135 PRI Rhodobacteraceae bacterium KLH11 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 0.762696284 0.806304108 0.778104306 0.786422026 0.853493771 0.865498028 170181169 alkb uncultured bacterium Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria; 0.870002106 0.814325669 0.790615383 0.878384858 0.993690615 0.810909812 0.822601755 0.815248617 0.811627164 0.861679785 0.778228483 0.852556967 0.817783862 0.83457514 0.824115517 290961401 xylanase Streptomyces scabiei 87.22 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces scabiei; 0.991390752 1.049411918 1.005270001 1.05067191 1.06098048 1.065741601 1.013640927 1.023808598 1.006639653 1.054647782 1.03730998 1.044262062 1.046760348 1.012727101 0.999711208 1.080910027 1.079260512 1.060794748 359772622 amyA Gordonia effusa NBRC 100432 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia effusa; 0.794685686 0.855638584 0.86247527 0.808062454 14276189 dsrB Desulfosarcina variabilis Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfosarcina; 0.947271208 0.956869749 0.882901924 0.984842285 0.9232351 0.950652509 0.86552205 0.892090997 0.94268243 0.948311979 0.860598204 0.956177279 0.922222333 0.944818492 0.86252426 0.908401834 0.963229633 0.957433654 302325819 atza Fibrobacter succinogenes subsp. succinogenes S85 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Fibrobacteres;class:Fibrobacteria;order:Fibrobacterales;family:Fibrobacteraceae;genus:Fibrobacter;species:Fibrobacter succinogenes; 0.971847999 0.934587524 0.923399124 0.958787553 0.925817329 0.902059714 0.933630888 0.958381094 0.943601538 0.919957467 0.909343416 0.960942729 0.898806869 0.846658207 0.818463135 0.837869875 0.935888306 0.955727817 307095248 sqr uncultured bacterium Sulfur Sulfide Oxidation NA superkingdom:Bacteria; 0.799864315 0.888679732 0.845587981 0.893210728 0.830644013 0.778657474 0.853766715 0.860620325 0.838532961 0.867413174 71066165 GAPDH_Calvin Psychrobacter arcticus 273-4 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter;species:Psychrobacter arcticus; 1.139113488 1.140128767 1.108723157 1.131017167 1.11198996 1.136477409 1.11793587 1.123518694 1.120377355 1.141289341 1.105156794 1.114419674 1.094504708 1.0909235 1.095157988 1.1144545 1.123076653 1.146132146 395773650 cmci Streptomyces acidiscabies 84-104 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces acidiscabies; 1.239258641 1.284888591 1.235141989 1.239483509 1.241097801 1.243467008 1.235901169 1.222019739 1.251929869 1.251008166 1.230018812 1.247211607 1.222598266 1.18920719 1.202404275 1.217162384 1.275987223 1.249699718 332377164 fthfs uncultured bacterium Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria; 0.954609242 0.964592886 1.018214466 1.052268013 0.996441358 1.003224189 0.96646371 1.013200394 1.032078111 0.938991353 0.959094166 1.023255132 0.917503059 0.901292845 0.974819461 0.938920769 1.039395036 0.851251398 119535742 catechol Nocardioides sp. JS614 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 0.975304023 0.964065182 1.001682434 0.98345624 0.984933428 0.995994146 0.939565976 0.984058229 0.971889399 0.982467597 0.986173141 0.991191507 0.984707248 0.965270632 1.017099368 0.964568574 0.986500822 1.007395541 54778311 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 0.923373226 0.92489761 0.918848535 0.937371826 0.942892906 0.92310033 0.864045701 0.869975097 0.925392906 0.914027934 0.894374289 0.892851896 0.880896704 0.914111323 0.816586687 0.844388494 0.92383794 0.961354447 169621189 tannase_Cdeg Phaeosphaeria nodorum SN15 Carbon Cycling Carbon degradation Tannins superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Phaeosphaeriaceae;genus:Parastagonospora;species:Parastagonospora nodorum; 0.769684398 0.777416618 0.784786346 0.845576466 41395143 mhpb Mycobacterium avium subsp. paratuberculosis K-10 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 0.788587625 0.801405347 359838840 pula Actinoplanes sp. SE50/110 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes; 1.237731502 1.197226139 1.179155709 1.174935022 1.180955884 1.207966759 1.175209911 1.184829806 1.182371806 1.174842788 1.133444177 1.146748973 1.162109973 1.136696618 1.100182803 1.141865209 1.198255007 1.183400891 262083617 catechol_b Gordonia bronchialis DSM 43247 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia bronchialis; 1.07037676 1.058266432 1.068667976 1.080884213 1.102156583 1.091309269 1.101144907 1.127834586 1.082847226 1.086289588 1.07359715 1.082155786 1.08040309 1.050891322 1.039403544 1.044539178 1.090847522 1.058640675 211905647 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.934481483 1.010910587 0.956019605 0.906473221 0.888837941 0.923360166 0.811552162 0.877641538 0.829897249 0.819909481 0.875556463 0.881917585 0.872507279 114763281 exaa(moxf) Pelagibaca bermudensis HTCC2601 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pelagibaca;species:Pelagibaca bermudensis; 1.141547993 1.101316161 1.116567548 1.15290187 1.096750772 1.118574354 1.089749492 1.147711076 1.133900584 1.094737533 1.085922332 1.166100877 1.069646415 1.073512032 1.064067054 1.093107418 1.129183092 1.094294941 40738974 phenol_oxidase Aspergillus nidulans FGSC A4 Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 0.827044421 0.846762727 0.827527543 0.847219017 0.78858303 0.821643285 0.84892506 0.858092539 0.858689612 0.804604301 0.831505455 0.812337486 0.859324356 0.875852222 114197669 glucoamylase Aspergillus terreus NIH2624 Carbon Cycling Carbon degradation Starch superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 0.956692331 0.964486136 0.915370321 1.009655983 0.892326397 0.980237421 0.909093425 1.042588294 1.040611187 0.925623509 0.89257543 0.975729916 0.902685217 0.921959259 0.907668806 0.9342758 0.983501348 0.952772568 167349638 vana Caulobacter sp. K31 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 1.02249805 1.067637187 0.992277073 0.982738601 0.925099184 0.979848433 0.907024468 0.942124583 0.973354299 0.983315638 0.960671248 0.971577064 0.96397935 0.942741845 0.876946225 0.950901153 0.994067126 1.005222003 56798123 narg Pseudomonas sp. MT-1 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.898109099 0.914248009 0.952692096 0.941289705 0.937909522 0.940863684 0.946586174 0.95086422 0.91312869 0.954807073 0.960658808 0.959933716 0.893234566 0.946278017 0.91692308 0.918909225 0.896825365 0.876378905 422314461 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.022268727 0.961833594 0.950972259 0.965026999 0.94875565 0.949461971 0.910456228 0.916979543 0.953422726 0.963601891 0.917482386 0.962705707 0.878785792 0.916002124 0.906700625 0.941174141 0.9655497 0.937710489 337270300 cmci Mesorhizobium opportunistum WSM2075 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium opportunistum; 0.882727803 0.946258428 0.848818241 0.904209015 0.838173847 0.874949721 0.848227095 0.832340859 0.922801525 0.810076284 0.849392687 0.892304208 0.841139401 0.81705123 0.89429234 291339485 linb Streptomyces ghanaensis ATCC 14672 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces ghanaensis; 1.371425783 1.336272858 1.33808236 1.37569054 1.322477658 1.347566414 1.326501871 1.356590504 1.351855965 1.312341353 1.311974522 1.34596441 1.305692024 1.282458613 1.325254709 1.295146291 1.36652433 1.315969167 112462197 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.819552617 0.807245847 0.816763187 0.830240941 0.865813425 77378473 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.953647519 0.985008641 0.953449216 0.988008859 0.974849374 0.952832257 0.945062031 0.925826253 0.910511029 0.957904128 0.914311362 0.891572277 0.949200782 0.876433904 0.940100263 0.925718262 0.966676806 0.964029742 332377218 fthfs uncultured bacterium Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria; 0.78581795 0.779525518 47680331 rubisco uncultured bacterium Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria; 0.827429314 0.81837686 0.81680985 0.772924625 0.821622962 0.819683184 0.81996187 0.814355684 0.821651519 0.867822428 334882137 amyA Lactobacillus pentosus MP-10 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus pentosus; 0.965545577 1.036175411 0.887431231 0.983489597 1.023780572 0.990817696 0.997407293 0.980509489 0.944223222 0.997013597 0.978862455 1.056791983 0.971666389 0.965493306 0.995880669 0.994989653 0.956893047 0.979953244 259170061 fthfs Lactobacillus antri DSM 16041 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus antri; 0.875399239 0.889592842 0.841626861 0.848872739 0.856261746 0.855186476 0.815621849 0.823166541 0.815495778 0.807084145 0.865912947 83633890 endochitinase Hahella chejuensis KCTC 2396 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Hahellaceae;genus:Hahella;species:Hahella chejuensis; 1.03512614 0.842870863 0.945212423 0.888331783 0.841040527 0.823422881 0.820909183 0.881332013 0.92630724 0.818621206 0.960678076 0.862043455 0.879500436 0.826281374 0.879420747 11066196 acetylglucosaminidase Aeromonas hydrophila Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas; 1.04957459 0.958997998 0.8341369 0.937435747 0.805579547 0.926400922 0.849479431 0.893311389 0.940154747 0.912402136 0.874003418 0.856807594 0.837044887 0.892513654 0.871878491 0.909841763 0.960554783 352962606 rubisco uncultured bacterium Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria; 1.363152003 1.295087287 1.334604041 1.343134698 1.290606395 1.347892017 1.287157142 1.325392026 1.330332891 1.312215339 1.304797986 1.326382441 1.300912749 1.307626565 1.320376645 1.309160919 1.359506808 1.315653044 225157179 amyA Bifidobacterium pseudocatenulatum DSM 20438 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium pseudocatenulatum; 1.044312059 1.010680311 0.967990854 0.999396104 0.986317113 1.032587469 0.988855063 1.012391819 1.000609518 1.010257247 1.016268196 0.995936162 0.983378509 1.006475119 0.992925552 1.017228746 1.041764699 0.985586781 255956699 cutinase Penicillium chrysogenum Wisconsin 54-1255 Carbon Cycling Carbon degradation Cutin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 1.164445581 1.176013624 1.114529111 1.164356056 1.122226551 1.138149958 1.080782147 1.117711278 1.15619554 1.117329425 1.111451861 1.117219627 1.091510192 1.105463974 1.096642047 1.087951443 1.188051026 1.14889093 238029053 arsc Burkholderia glumae BGR1 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia glumae; 0.790720997 0.840303592 0.82954288 0.814637278 0.83191979 0.861858668 0.847060474 0.851716341 0.837566715 0.841748135 0.809377503 0.811837643 0.80529016 345878974 frdA_rTCA endosymbiont of Riftia pachyptila (vent Ph05) Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;species:endosymbiont of Riftia pachyptila; 1.14082196 1.101320574 1.103760707 1.113891602 1.065106801 1.110223698 1.052883373 1.106485023 1.106333902 1.086335962 1.089957559 1.134018533 1.091663241 1.085203978 1.062587508 1.097490612 1.130173312 1.096494511 354569305 PRI Mesorhizobium australicum WSM2073 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium australicum; 0.888116735 0.920464548 0.845860022 0.908410192 0.827486695 0.857028224 0.81935987 0.854375867 0.897841012 0.840941725 0.830472848 0.86442283 0.836320752 0.842547909 0.868404519 0.845396715 0.90986481 0.895488266 146192311 gdh Bradyrhizobium sp. ORS278 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.961704576 0.934881821 0.910903315 1.001255815 0.858032887 0.953139363 0.901009586 0.949119687 0.974258569 0.934493014 0.905065747 0.933277512 0.865082708 0.879575164 0.896108304 0.996147486 0.968537899 84778343 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.028697919 0.987947967 0.994430301 1.072228916 0.969821352 1.00183157 0.963343906 1.014453495 1.044244959 1.002195986 0.945894401 0.994377287 0.946358731 0.974816876 0.921134509 0.979143351 1.030758077 1.009441943 258543376 PRI Acetobacter pasteurianus IFO 3283-01 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acetobacter;species:Acetobacter pasteurianus; 1.081167648 1.048517727 1.02377747 1.045781289 0.997205737 1.058306609 0.987685642 1.041098381 1.03816268 1.033225532 1.032221783 1.03004608 1.00430723 1.030660981 0.980849083 1.009347261 1.06501408 1.054367303 358242475 linb Gordonia araii NBRC 100433 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia araii; 1.088321952 1.088477293 1.052747571 1.097057146 1.07193197 1.079970587 1.031010614 1.067907399 1.079823144 1.04454472 0.999926127 1.052150909 1.086566472 1.008737459 0.990955925 1.029983481 1.098484967 1.065819604 392951996 arylest Hydrocarboniphaga effusa AP103 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Sinobacteraceae;genus:Hydrocarboniphaga;species:Hydrocarboniphaga effusa; 0.962005574 0.917168624 1.011753459 1.015109945 0.963476662 1.012316775 0.984109408 0.97416242 1.038579084 0.998191581 0.9675614 1.009179774 0.939234946 0.924519944 0.913067033 0.953132737 1.06059306 1.002604701 388436127 acetylglucosaminidase Rhodanobacter sp. 115 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Rhodanobacter; 0.952445102 1.000876535 0.98866795 0.975649365 0.978836481 0.963025494 0.893869622 0.912006081 0.926351895 0.933994606 0.916525753 0.937493524 0.931735048 0.946824098 0.929589384 0.935565577 0.956961189 0.981999458 91684750 phn Rhodopseudomonas palustris BisB5 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 1.210874073 1.214779069 1.18393743 1.189842875 1.200323653 1.212559245 1.15979838 1.158642041 1.169512492 1.181838096 1.164215143 1.179348881 1.197413531 1.16132078 1.145020397 1.18639997 1.202979089 1.189364714 385888895 dsra Desulfotomaculum sp. Eth-2 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum; 0.872198264 0.965422379 0.84989079 0.915135993 1.000608758 0.913638358 1.082888648 0.890608808 0.950057937 0.994597486 0.989670493 0.865144383 0.938650063 0.931874819 0.862952404 0.895993384 0.930593258 0.93588362 169793440 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.022192688 0.956027613 0.968729604 1.024619593 0.921439568 0.993819883 0.991120036 0.998083228 1.074087783 0.983955095 0.945586204 0.98553245 0.940721475 0.973543344 0.931313111 0.949887675 1.012717112 0.984921951 219741442 FBPase Cupriavidus metallidurans CH34 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 0.877823662 0.919350823 0.869817647 0.81438237 0.824232156 0.879715936 0.844567729 0.859169957 0.806719721 0.877333412 0.854651424 0.847784844 0.848686422 119116052 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.914906468 0.921489403 0.912004799 0.916051422 0.878018625 0.949039268 0.854528555 0.915590206 0.878009979 0.900504939 0.888062819 0.874534864 0.915908686 0.900586191 0.919538117 0.947367687 0.913951088 59859762 EF1a_Stramenopiles Phaeodactylum tricornutum Other Phylogenetic NA superkingdom:Eukaryota;phylum:Bacillariophyta;class:Bacillariophyceae;order:Naviculales;family:Phaeodactylaceae;genus:Phaeodactylum; 0.803895028 0.827249894 0.865626409 0.832032975 0.812471916 0.843638791 0.858883397 0.832068307 159041230 cellobiase Caldivirga maquilingensis IC-167 Carbon Cycling Carbon degradation Cellulose superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Caldivirga;species:Caldivirga maquilingensis; 0.995476604 1.002552123 1.015885407 1.023470676 1.004772251 0.976062995 1.033473068 0.987448682 1.055279038 1.003771912 0.988179637 1.016260724 1.011503705 0.923625052 1.021431861 0.950533637 1.001989659 0.999840703 302434560 bphd Streptomyces sp. AA4 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 0.842984148 0.815243156 0.891954869 0.844572231 0.874714446 0.817930727 0.892122697 0.813893279 374704816 FBPase Pseudomonas sp. S9 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.941355979 0.948531603 0.940002561 0.936396603 0.893283702 0.930913465 0.899913027 0.901171547 0.927664696 0.933499587 0.916746556 0.895022949 0.870645528 0.902599667 0.858705554 0.892548552 0.897640132 0.941479818 26278846 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.822426379 0.823797526 0.810446066 0.815738915 0.78294878 0.835760308 456029 exoglucanase Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas; 1.310826219 1.293666338 1.292775958 1.287338766 1.270285848 1.303569935 1.277684063 1.28111136 1.265499763 1.258934532 1.283976835 1.296058186 1.252818498 1.229518174 1.254725492 1.25305712 1.289590423 1.293633281 296093577 endoglucanase Thermobispora bispora DSM 43833 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Thermobispora;species:Thermobispora bispora; 0.834431075 0.889623954 0.869770579 0.872414278 0.854336026 0.903702067 0.839256886 0.811638457 0.87059295 0.894822435 0.831423564 0.861771184 0.899559821 0.853750513 0.867798523 0.864406186 0.883463928 88797847 pectinase (pectate_lyase) Reinekea sp. MED297 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Reinekea;species:Reinekea blandensis; 0.870575203 0.867606632 0.864807296 0.908836492 0.926013791 0.868240804 0.895717061 0.909515829 0.889761821 0.83513843 0.877814218 0.907709995 0.858446924 0.87039239 0.870550593 0.865483727 126626875 dehh109 Marinobacter sp. ELB17 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter; 0.951950867 0.918906187 0.935343913 0.95546823 0.940115852 0.988780881 0.915314145 0.930770436 0.933025796 0.908876202 0.915052885 0.933257686 0.835689915 0.835331201 0.824292655 0.815171464 0.899438304 0.914190862 159893888 cda Herpetosiphon aurantiacus DSM 785 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Herpetosiphonales;family:Herpetosiphonaceae;genus:Herpetosiphon;species:Herpetosiphon aurantiacus; 1.226200979 1.213567582 1.22672714 1.210455707 1.24675006 1.218397096 1.194322425 1.18074727 1.186033354 1.161162796 1.190734283 1.219126428 1.242366274 323319501 arsc uncultured bacterium Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 1.397846006 1.371160261 1.351275983 1.366143363 1.33890691 1.395778988 1.339379879 1.34965986 1.356100319 1.348795944 1.353379057 1.347852249 1.321748218 1.32847969 1.291549655 1.33058176 1.35850045 1.339424317 117998472 tehb Comamonas testosteroni KF-1 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 1.041838617 1.131553512 1.139439733 1.122721901 1.078160253 1.11742246 1.082666899 1.09308815 1.067711702 1.134984756 1.124078383 1.13094884 1.057619294 1.085156217 1.033644563 1.068875492 1.050465218 1.049249036 334731878 tktA Ramlibacter tataouinensis TTB310 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Ramlibacter;species:Ramlibacter tataouinensis; 0.93171883 0.906922738 0.923102466 0.956647386 0.901678553 1.030749693 0.851589908 0.89355807 0.932545368 0.903517588 0.914275053 0.957400834 0.871218706 0.911185039 0.875270077 0.891967532 0.947877526 0.914553782 256668779 acetylglucosaminidase Streptomyces sp. AA4 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 0.793602467 0.845639309 77165617 terc Nitrosococcus oceani ATCC 19707 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Nitrosococcus;species:Nitrosococcus oceani; 1.236782355 1.206993107 1.206596007 1.221583527 1.212524524 1.196792639 1.191298994 1.18771261 1.195410155 1.19599862 1.227693299 1.19998268 1.201179565 1.125389275 1.126951268 1.199060826 1.19794372 1.200628126 384104916 badh Rhodococcus imtechensis RKJ300 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus imtechensis; 0.882862217 0.817411799 0.849569211 0.872963053 0.866095734 0.826373963 0.877296598 0.855930815 0.854096193 0.844856514 0.823539775 118569351 cutinase Mycobacterium ulcerans Agy99 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium ulcerans; 1.143725213 1.082427792 1.09068105 1.120232966 1.078582177 1.059627903 1.092348551 1.073160619 1.067507653 1.106364451 1.068484982 1.101415671 1.046064734 1.012568678 1.004097454 1.071241367 1.066589019 1.099219854 259507073 amyA Corynebacterium efficiens YS-314 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium efficiens; 1.252702256 1.236052082 1.233932064 1.258891035 1.201984583 1.251208333 1.209183756 1.257705894 1.25404204 1.230402104 1.211484801 1.231728605 1.184076555 1.20589925 1.154827922 1.200435911 1.258647854 1.215463431 66801859 narg unidentified bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.063471862 1.035937198 1.023003796 1.094144025 1.009076511 1.017258609 1.006296351 1.042766952 1.060408062 1.002319578 1.011665164 1.034580303 0.995668884 0.993584653 0.955301445 1.00891919 1.068479937 1.008680924 333953919 amyA Cronobacter sakazakii E899 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Cronobacter;species:Cronobacter sakazakii; 0.925797259 0.91321375 0.910384717 0.936286017 0.957522278 0.872266917 0.914461006 0.933578248 0.943941632 0.873857367 0.885823223 0.893243515 0.880210097 0.837345212 0.912746679 0.857169415 0.931979752 0.838650619 256782151 ara Streptomyces hygroscopicus ATCC 53653 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces himastatinicus; 1.456299722 1.450856503 1.388812516 1.399712533 1.410055103 1.485265649 1.369622733 1.380302299 1.379442779 1.387721559 1.424800915 1.37554679 1.368393208 1.375289338 1.231763172 1.360591085 1.44848844 1.390193392 302679542 mannanase Schizophyllum commune H4-8 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 1.253768431 1.202579953 1.261495722 1.254955597 1.226972477 1.243295807 1.236036383 1.244083094 1.25821376 1.205860879 1.22278775 1.23987353 1.211517032 1.207373039 1.160710571 1.227588543 1.27854657 1.18684145 218564160 phenol_oxidase uncultured fungus Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi; 1.191431233 1.163477752 1.175950337 1.185066451 1.170320305 1.169889211 1.157537304 1.1673373 1.176992288 1.17310377 1.181843954 1.194678655 1.131437476 1.140946912 1.116462715 1.14158067 1.173692711 1.148095425 349699596 tktA Gluconacetobacter europaeus LMG 18494 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter europaeus; 1.032889319 0.96908435 1.013945435 1.054268435 1.020413297 1.055959187 1.053825888 1.066226703 0.977284871 0.933963285 0.99089147 1.016965364 0.951063025 0.965794384 0.909977693 0.964650832 1.033011555 1.041380265 119817918 catechol Pseudomonas putida W619 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 1.241492144 1.240706513 1.221310658 1.194611542 1.227719476 1.283694679 1.220545427 1.212761714 1.199371576 1.246177563 1.241241626 1.195677811 1.211598978 1.19760451 1.169917736 1.184307374 1.252264338 1.237062442 212003473 phospholipase_A2_fungi Schizosaccharomyces japonicus yFS275 Carbon Cycling Carbon degradation Phospholipids superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Schizosaccharomycetes;order:Schizosaccharomycetales;family:Schizosaccharomycetaceae;genus:Schizosaccharomyces;species:Schizosaccharomyces japonicus; 1.166168541 1.173721077 1.170963676 1.103133567 1.159312728 1.166145003 1.124515904 1.115628699 1.074834925 1.129137051 1.167695785 1.114114036 1.116530854 1.142854191 1.108922457 1.136571704 1.14923513 1.131589397 121554511 phtb Verminephrobacter eiseniae EF01-2 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 1.006949159 1.079705508 1.027007028 1.03309455 1.07532416 1.07440221 1.007475279 0.980507585 1.018127703 1.011199815 0.962234198 1.025205314 1.015936466 0.946741539 1.008849578 1.020207536 1.024362087 1.047130791 410370804 xyll Klebsiella oxytoca M5al Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella oxytoca; 0.792939248 0.825139206 358448028 ppx Marinobacter manganoxydans MnI7-9 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter manganoxydans; 1.098983055 1.10128692 1.117829357 1.122659395 1.080818732 1.140916875 1.08952562 1.070054273 1.084000767 1.12629998 1.118416502 1.129894843 1.055189322 1.068764235 0.997864523 1.040146133 1.062520013 1.096637108 334365118 acetylglucosaminidase Alistipes sp. HGB5 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Rikenellaceae;genus:Alistipes; 1.053613533 1.024287058 0.957122754 1.081587987 0.992520387 1.032085122 0.943967383 0.99517976 1.011907874 1.011673945 0.963010468 1.010440238 0.967741596 0.973347167 0.978989538 0.983219273 1.030786601 1.046354828 6460756 urec Deinococcus radiodurans R1 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus radiodurans; 1.052848468 1.074267331 0.967224285 1.011146184 1.04651151 1.040531682 0.992322628 0.989959096 0.975169245 0.972977455 1.057490551 1.001144474 0.973246922 0.990192318 0.955522939 0.986793205 1.031384189 1.062862661 318041723 TIM Synechococcus sp. CB0101 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 1.202179576 1.226839704 1.165321724 1.178649761 1.173066705 1.183360319 1.13217588 1.14956693 1.164901135 1.133862829 1.155662167 1.177928393 1.187513541 1.104128302 1.169236119 1.127388193 1.189027002 1.144404291 166367532 ccmM Microcystis aeruginosa NIES-843 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Microcystis;species:Microcystis aeruginosa; 0.945444852 0.944180913 0.908504555 0.946087375 0.903839562 0.944253005 0.911176763 0.865942288 0.932774429 0.888685485 0.872768628 0.888379629 0.914903243 0.851348136 0.946427366 0.874893157 0.955822933 0.903207023 347588329 trza Candidatus Chloracidobacterium thermophilum B Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Acidobacteria;genus:Candidatus Chloracidobacterium;species:Candidatus Chloracidobacterium thermophilum; 0.972629158 1.00014623 0.982497874 0.962163428 0.959170498 0.98624142 0.995507768 1.023983658 0.927466332 0.916702635 1.008589253 0.947653643 0.953971682 0.942462597 1.021698066 0.955775117 0.980152276 308433420 amyA Dermacoccus sp. Ellin185 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dermacoccaceae;genus:Dermacoccus; 1.293895621 1.299010417 1.269745459 1.252178595 1.206874344 1.270324333 1.229601351 1.23462666 1.220237826 1.255839616 1.237624884 1.242603849 1.21830558 1.214059643 1.181565738 1.223437855 1.262483858 1.248587136 374389735 amyA Paenibacillus dendritiformis C454 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus dendritiformis; 0.869242455 0.81210129 0.816931781 0.888607356 0.866557305 0.844848713 0.856634889 0.85676035 0.861044813 0.795802049 0.871142936 0.828385272 0.857807629 0.831748288 192897546 ppk uncultured bacterium Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria; 0.82493129 0.82063501 225416615 fthfs Clostridium asparagiforme DSM 15981 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium asparagiforme; 0.926850203 0.97702531 0.961013904 0.983491681 0.97749083 0.969238714 0.897070275 0.935205099 0.932759006 0.994060704 0.997428051 0.976968889 0.996185469 0.931581416 0.938293581 0.945122381 0.95385722 0.978260924 83972350 nosz uncultured alpha proteobacterium Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 0.873082272 0.856865484 0.882622725 0.848946802 0.832927075 0.85780804 0.880746537 0.845866543 0.79427401 0.834890838 0.85854165 0.843116423 0.891638995 319777942 exaa(moxf) Mesorhizobium ciceri biovar biserrulae WSM1271 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium ciceri; 1.203535123 1.228460087 1.194981515 1.201347093 1.202194008 1.231543027 1.188552731 1.201320908 1.201055306 1.214940496 1.192809792 1.197849206 1.155417806 1.171536134 1.130108893 1.180229731 1.204161647 1.215498627 328544805 catechol Polymorphum gilvum SL003B-26A1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;species:Polymorphum gilvum; 0.993792191 0.986152466 0.973683246 0.962678862 0.941646293 0.969296818 0.940340031 1.008302858 0.964034875 0.969701752 0.974316657 0.955757732 0.9243391 0.952275344 0.88583989 0.927794928 0.98942446 0.992896146 169241478 urec Mycobacterium abscessus Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 1.204314711 1.149418387 1.149954171 1.185062204 1.156310547 1.166086283 1.114317043 1.167836789 1.171186116 1.151938925 1.142429492 1.197982052 1.147191991 1.143508225 1.109693676 1.143765811 1.177796512 1.134356945 78185179 CsoS2 Synechococcus sp. CC9902 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 1.004156195 0.92044919 0.950947086 1.011345211 0.919625445 0.924841963 0.884437952 0.977039968 0.963026129 0.902734704 0.926585686 0.957063284 0.91977342 0.903827448 0.889958323 0.925626914 0.953435452 0.913120576 353194066 xyla Paenibacillus lactis 154 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus lactis; 1.010293328 1.009949535 0.979368617 0.980239818 0.998105315 0.996806517 1.006897302 1.015072494 0.992977958 1.003862893 1.006810958 1.005272933 0.896004346 0.924590993 0.856341269 0.945339677 0.997784027 0.942171101 311895781 bphF1 Kitasatospora setae KM-6054 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Kitasatospora;species:Kitasatospora setae; 0.942865716 0.867479773 0.817510836 0.853825656 0.818288502 0.839256325 0.796085946 0.874876219 0.863091364 32308017 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.83107893 0.903005202 0.823488247 0.843820348 0.904340387 0.860123506 0.874701999 0.963100535 0.860596721 0.894099399 0.889140203 0.884334143 0.874885224 0.875088031 0.829499812 0.833861634 0.891206821 0.913169892 26278704 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.856438025 0.871307781 0.872105448 0.901738428 1.015491693 0.803999612 0.788731615 0.87471119 0.884199829 158523640 dsra uncultured bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.964129825 0.991748535 0.958846958 0.992288102 0.990106529 0.950622744 0.982697206 0.992760033 1.005563346 0.992561595 0.969193076 1.004825619 0.911729398 0.989936589 0.912653592 0.927418699 0.915758284 0.97606603 315633676 gdh Aggregatibacter segnis ATCC 33393 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Aggregatibacter;species:Aggregatibacter segnis; 0.855453204 0.829420526 0.876087465 0.824210162 0.854559049 0.867228988 0.832882233 0.841359327 0.806583663 0.847984929 0.809717055 0.831745848 334137810 amyA Paenibacillus sp. HGF7 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 0.766705868 0.861568297 0.798036494 0.860504763 0.863894276 0.816156066 0.800830096 0.880756987 0.831743127 0.82639887 0.862043219 0.852834333 66840877 pmoa uncultured bacterium Carbon Cycling Methane Methane oxidation superkingdom:Bacteria; 0.86990017 0.869596773 0.861280322 0.881215831 0.872679637 0.880421852 0.916730791 0.856338577 0.852782576 0.946015998 0.974660276 0.941714917 0.926117333 0.999184877 0.847193 0.828398802 0.854693017 0.858008756 365968759 amyA Enterobacter cloacae EcWSU1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter cloacae; 0.798235453 0.82907818 0.858773969 0.835958912 0.830488844 0.86477144 83309358 poba Magnetospirillum magneticum AMB-1 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum magneticum; 1.160019398 1.195332621 1.147725065 1.154702932 1.121938439 1.169233269 1.116300398 1.140760046 1.153405967 1.143737037 1.129351877 1.134359226 1.130438903 1.128783409 1.100392042 1.127214788 1.168975094 1.16215854 146276395 TIM Rhodobacter sphaeroides ATCC 17025 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 1.250994865 1.216264949 1.208839118 1.228547166 1.189293068 1.219077993 1.199795082 1.194642221 1.204097772 1.208658361 1.198340808 1.206684112 1.171026536 1.153362342 1.191949843 1.189948791 1.223105358 1.20360807 19171196 phenol_oxidase Gaeumannomyces graminis var. tritici Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Gaeumannomyces;species:Gaeumannomyces graminis; 0.801543521 0.797362362 0.881041663 0.821165031 9622537 bbsg Thauera aromatica Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Thauera; 0.966078324 0.854414285 0.942844781 0.943249812 0.901273461 0.882370278 0.846306586 0.917115978 0.986974815 0.903924084 0.948891258 0.897707942 0.915479617 0.897820339 0.834113278 0.896142024 0.959199473 0.900744724 50919564 nifh uncultured nitrogen-fixing bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.862652538 0.862568558 0.830130827 0.873391722 0.851523321 0.815114534 0.819200325 0.782168334 0.848549809 0.86613593 0.84241425 0.848215014 0.775292124 0.863674908 0.799257802 0.901412857 160917512 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.215640044 1.198146974 1.172514443 1.192996019 1.144210098 1.1835618 1.139187833 1.147243931 1.183809866 1.189697784 1.159837613 1.150358944 1.12963569 1.168716266 1.094170305 1.147387377 1.232023204 1.185580303 302878314 tktA Gallionella capsiferriformans ES-2 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Gallionellales;family:Gallionellaceae;genus:Gallionella;species:Gallionella capsiferriformans; 1.447253763 1.450294957 1.409354985 1.405230422 1.41728879 1.472746522 1.397597051 1.388295202 1.392697898 1.404409453 1.42269152 1.419184519 1.405222588 1.392542058 1.382557993 1.387712116 1.424527647 1.410798471 47572055 ppx Rubrivivax gelatinosus PM1 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 1.077959129 1.029481097 1.026627349 1.051349758 0.993665876 1.075601522 1.043838687 1.012518733 1.060645233 1.035073641 1.044565688 1.022959612 1.02755932 1.042663896 1.085783532 1.057648367 1.049379126 1.063798423 29604552 pcpb Streptomyces avermitilis MA-4680 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 1.030983994 1.04896935 1.049913624 1.043958373 1.009457132 1.05650394 1.024568196 1.019503278 1.047121678 1.047467086 1.031551835 1.055758677 1.021911374 0.994596979 0.97987214 0.994537608 1.025326004 1.032128544 44829113 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.97884642 0.977840527 1.001378496 1.02448817 0.991044713 0.976133308 0.992293161 1.028743024 0.982660109 0.975779192 0.994094283 1.006473322 0.979839634 1.000530941 0.95902132 0.984804559 0.975178294 0.981837679 328810492 CsoS1_CcmK Verrucosispora maris AB-18-032 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Verrucosispora;species:Verrucosispora maris; 0.846251718 0.854861157 0.840253154 0.852012418 0.832485917 0.806546267 0.821482066 0.82754862 0.826724196 0.843129812 0.826598392 384104807 limeh Rhodococcus imtechensis RKJ300 Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus imtechensis; 1.087565391 1.039221017 1.053069176 1.035988919 1.000790249 1.052903038 0.9513347 1.01896211 1.035722013 1.025119943 1.056915646 1.048318463 1.013687956 1.057438824 0.985309105 1.005989459 1.075318119 1.035011867 357975494 ppx Sphingomonas sp. KC8 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 0.965345627 1.000490413 0.989046494 0.989487529 1.036453375 1.027710384 0.979332098 0.953975527 0.960434629 1.024071743 0.959551457 0.967573302 0.983069213 0.99299435 0.981732833 0.970377953 1.031043393 1.034609124 114552360 glucoamylase Mariprofundus ferrooxydans PV-1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Zetaproteobacteria;order:Mariprofundales;family:Mariprofundaceae;genus:Mariprofundus;species:Mariprofundus ferrooxydans; 0.846675766 0.857143116 0.824082789 0.801737282 0.781674024 459864 alginase Klebsiella pneumoniae Carbon Cycling Carbon degradation Alginate superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella; 1.090127899 1.012459361 1.040863916 1.042592554 1.06868274 1.030582344 1.022585785 1.034937043 1.018581507 0.998142957 1.005506736 1.04331195 1.013957754 0.940487745 1.000536451 1.021345904 1.030037086 1.024477786 383767418 cellobiase Phycisphaera mikurensis NBRC 102666 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Planctomycetes;class:Phycisphaerae;order:Phycisphaerales;family:Phycisphaeraceae;genus:Phycisphaera;species:Phycisphaera mikurensis; 1.027421847 1.01216282 1.007984681 0.997089806 1.01857828 1.01873095 0.950579674 1.003278469 1.014350236 0.969190546 0.95217251 0.970488891 0.975308033 0.938725168 0.923763875 0.967989404 1.041516008 1.051138775 298232825 ccmL 'Nostoc azollae' 0708 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Trichormus;species:Trichormus azollae; 1.215701527 1.196668993 1.183348266 1.209028655 1.197758797 1.205920339 1.169583646 1.213035942 1.192441779 1.165446131 1.175230793 1.197062681 1.168824786 1.14514313 1.167826092 1.181952272 1.215601862 1.168900209 222440038 pcpe Labrenzia alexandrii DFL-11 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia alexandrii; 1.069389928 0.979070085 0.982464051 1.069210384 1.012534686 1.001251164 1.04400762 1.020539351 1.050943327 1.009874804 1.063211268 1.040465613 1.002113537 0.95211433 0.936953841 0.911367162 1.04708823 0.97529039 154246624 poba Xanthobacter autotrophicus Py2 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 1.135189794 1.152524383 1.101234443 1.154968719 1.083833152 1.135173889 1.069254017 1.127039587 1.120358552 1.117890533 1.08664028 1.140085413 1.099675133 1.093241334 1.067373987 1.076482356 1.141245121 1.147336179 162072792 dsrB uncultured bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.884776541 0.817619027 0.856999489 0.784151469 0.826109906 0.845047399 0.850052935 0.855084313 305856335 pectinase (pectate_lyase) Paenibacillus polymyxa E681 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus polymyxa; 1.13322673 1.024316786 1.035222374 1.049808888 1.035631337 1.002468031 1.041623157 1.029181165 1.024368086 1.001961617 1.014097767 1.057810326 1.024375567 0.97280873 1.033483531 1.037917766 1.043684576 0.957717606 407362144 bend Pseudomonas mandelii JR-1 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas mandelii; 0.798294027 0.900590616 0.893795004 0.891358823 0.85665635 0.994395829 0.897019991 0.875402237 0.873577521 0.913369661 0.848925035 0.906084102 0.910480563 0.921894635 0.863084714 0.840904727 0.880009896 0.848889853 156932744 cysJ Cronobacter sakazakii ATCC BAA-894 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Cronobacter;species:Cronobacter sakazakii; 0.958169477 1.000736083 0.933897533 0.975165833 0.933094321 0.975033413 0.929454955 0.89749104 0.996028834 0.929331665 0.957095116 0.948893026 0.915534362 0.932389768 0.9186058 0.883691803 0.940064483 1.009775722 4633565 nosz uncultured bacterium ProI Nitrogen Denitrification NA superkingdom:Bacteria; 1.245423489 1.214428296 1.202995229 1.194760492 1.196558944 1.233342682 1.17915637 1.20073605 1.190476305 1.207314559 1.198613014 1.186367298 1.181762407 1.2166926 1.195274823 1.194018573 1.210639352 1.199264337 39942844 tannase_Cdeg Magnaporthe grisea 70-15 Carbon Cycling Carbon degradation Tannins superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 0.790042363 0.80355677 0.778695271 0.840517816 0.808295586 0.786354878 0.815361601 0.834968323 85720869 narg Enterobacter cloacae Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 0.957905212 0.934181918 1.056508056 0.898046964 0.892116925 0.979658937 0.891146158 0.839437627 0.918149275 0.913233571 0.892431098 0.909449056 0.883128439 0.88319629 0.903487125 0.889347764 0.962469053 0.956725517 226346800 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.892859893 0.907182643 0.871537195 0.893147522 0.88897485 0.812479919 0.846857956 0.938186289 0.85655321 0.874164619 0.834615256 0.83899425 0.777586216 0.840963598 0.836452755 0.934986679 0.880389896 397334965 catb Pseudomonas putida DOT-T1E Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 0.913804828 0.886550408 1.013012084 0.96184203 0.95723337 0.897148825 0.944701001 0.92405096 0.938487669 0.921251762 1.003952738 0.963789465 0.952820059 0.891564439 0.9647373 0.922928715 0.985451756 0.914751827 251790067 pme Dickeya zeae Ech1591 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya zeae; 1.01191224 0.96293752 0.991873216 1.015156394 1.018809221 1.016067053 1.024939773 1.00431914 1.036381633 0.999194292 0.979917684 1.030797257 0.949645192 0.914200098 0.817358648 0.918095226 1.00352172 0.984636592 126218145 mdla Burkholderia pseudomallei 668 Organic Remediation Aromatics Aromatic alpha hydroxy acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia pseudomallei; 0.86549455 0.922181749 0.90107449 0.895398033 0.968514645 0.907208247 0.97592145 0.97146771 0.92300438 0.986178002 0.99781257 0.936387681 0.935277874 0.863646804 0.789546434 0.94898579 0.900222822 0.94573693 118168061 msad Mycobacterium avium 104 Organic Remediation Others NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 0.852400055 0.830991163 0.807282596 0.855702509 0.819497845 0.816065042 0.821695754 0.800588895 0.849012813 0.862061192 0.841357852 0.860956623 83317102 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.178430929 1.159509053 1.12268049 1.164043538 1.133227642 1.157896183 1.119282482 1.138815597 1.122672562 1.119767459 1.10935305 1.146130355 1.118144278 1.121055821 1.131221288 1.117454133 1.159089954 1.127758801 152993065 arsc Sulfurovum sp. NBC37-1 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;genus:Sulfurovum; 0.750256864 0.823298059 323467898 ara Arthrobacter phenanthrenivorans Sphe3 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter phenanthrenivorans; 1.078638256 1.049607938 1.072403042 1.10367372 1.002317852 1.088747993 1.03340985 1.060228779 1.068435642 1.047696492 1.089875846 1.071723557 1.013685802 1.019290728 1.035106845 1.052970085 1.09706356 1.050866658 10441632 xylg Comamonas sp. JS765 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas; 0.951991571 0.963292426 0.925097982 0.914627661 0.889950894 0.908459938 0.867178826 0.887842364 0.887834465 0.920362906 0.901915701 0.87276049 0.918075805 0.890615295 0.870058733 0.872821189 0.940712813 0.927458793 22323646 invertase_fungi Schizosaccharomyces pombe Carbon Cycling Carbon degradation sucrose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Schizosaccharomycetes;order:Schizosaccharomycetales;family:Schizosaccharomycetaceae;genus:Schizosaccharomyces; 0.844684762 0.832434992 0.854477338 0.842722309 0.823634714 0.820811718 159046016 pcag Dinoroseobacter shibae DFL 12 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 0.795693365 0.810853474 0.824504119 0.781464547 0.807476045 0.765557886 30142112 dsrB uncultured bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.89090705 1.189106216 0.803597724 0.852141667 0.878568073 0.797474641 0.930959227 0.88520027 0.956692725 1.00854881 0.936283183 0.935042327 0.85713325 0.856645687 0.904516344 213968723 atza Pseudomonas syringae pv. tomato T1 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 0.848071375 0.863256914 0.802180644 0.798320417 0.843935589 0.824784183 0.843788048 0.871412404 83316730 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.276390286 1.256692045 1.256406703 1.279480914 1.238175446 1.228466949 1.243493081 1.271243732 1.275882512 1.269646101 1.23035054 1.295152078 1.223023626 1.215408106 1.223200333 1.247717296 1.256101553 1.233483658 262085168 chnb Gordonia bronchialis DSM 43247 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia bronchialis; 0.894923981 0.968894645 0.876087524 0.915970353 0.913166933 0.937841674 0.878178984 0.871432175 0.882762087 0.906450195 0.892288367 0.916880941 0.903119832 0.901153618 0.86561188 0.923217399 0.916697727 0.961531987 374310956 terc Granulicella mallensis MP5ACTX8 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Granulicella;species:Granulicella mallensis; 1.238257235 1.262126635 1.208299901 1.258394245 1.186651748 1.237777866 1.147242799 1.172931389 1.172100903 1.208480537 1.174479009 1.19237834 1.152393841 1.170784829 1.121923534 1.213955405 1.236616251 1.256095568 73763002 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.054043439 1.072642236 1.037619315 1.056849547 1.055056515 1.052633754 1.028881696 1.042832426 1.042223212 1.054450855 1.050260089 1.053728157 1.018442468 1.063569734 0.965228574 1.006847354 1.073487944 1.086144955 358064944 b_lactamase Clostridium hathewayi WAL-18680 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hathewayi; 0.80867833 0.800991637 0.781672707 0.777763744 0.8246656 0.757330276 0.815255055 0.842467444 170740324 exaa(moxf) Methylobacterium sp. 4-46 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 1.07163333 1.107085163 1.057934185 1.068301312 1.066242564 1.101298938 1.062126562 1.056652772 1.046127785 1.069313708 1.095188843 1.088401482 1.070540188 1.083860308 1.00419859 1.071889661 1.065963601 1.089282885 13474128 urec Mesorhizobium loti MAFF303099 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 1.042572942 1.004908556 1.016676386 1.059423777 0.961202009 1.003246649 0.970029062 1.029343496 1.052434078 0.99947319 1.004201663 1.023256077 0.991458973 0.966903116 0.960730965 1.006949167 1.048113031 0.995903274 227112767 alginase Pectobacterium carotovorum subsp. brasiliensis PBR1692 Carbon Cycling Carbon degradation Alginate superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium carotovorum; 1.108445584 1.05317494 1.064699624 1.104813588 1.049152937 1.074911923 1.072119792 1.081940703 1.102315134 1.069153201 1.059898246 1.106522049 1.069711238 0.999785649 1.006241719 1.024745675 1.101589904 1.013254028 74422173 arsc Nitrobacter winogradskyi Nb-255 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter winogradskyi; 0.882029421 0.840119328 0.806933448 0.85850338 0.82027815 0.863852553 0.845941039 0.859335533 0.844727441 0.873468178 0.803250752 0.809996306 0.811924434 0.830725719 0.850595742 0.861789755 0.881037403 383452079 ppk Corallococcus coralloides DSM 2259 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Corallococcus;species:Corallococcus coralloides; 1.135463336 1.158527346 1.14401319 1.100855429 1.180433394 1.206637098 1.173625881 1.137777481 1.128665814 1.16777765 1.158857247 1.138795683 1.163271319 1.169979533 1.159804467 1.178703804 1.144616443 1.168080101 163841463 ppx Renibacterium salmoninarum ATCC 33209 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Renibacterium;species:Renibacterium salmoninarum; 1.022158434 0.981731521 0.962660726 1.009599182 1.014006185 1.086482032 0.974946163 0.957570399 0.982024099 1.001700221 0.954356336 1.027250868 0.964689509 1.005946841 1.029143329 0.969162837 1.018777513 0.995240994 380774716 amyA Microbacterium laevaniformans OR221 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Microbacterium;species:Microbacterium laevaniformans; 0.875969197 0.888387096 0.85029679 0.887266484 0.848656975 0.8988187 0.870096119 0.912595204 0.909797179 0.824971809 0.877355634 0.798265624 0.836968189 0.831454142 0.846635438 0.890344391 150028717 nhh Sinorhizobium medicae WSM419 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 0.842356018 0.885847118 0.868737096 0.884344764 0.838684825 0.909673727 0.845455458 0.847986959 0.86385026 0.89600037 0.821833368 0.862289224 0.873306959 0.847302009 0.817372277 0.827711911 0.915940214 0.920289052 189500418 mer Chlorobium phaeobacteroides BS1 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeobacteroides; 0.810748154 0.831693643 0.870309147 0.869398024 0.8488502 0.883398492 0.854420184 0.871825711 0.885568657 0.84432355 0.887022029 0.805737018 0.84459382 0.875590961 0.89104303 0.847684172 0.851255522 162568525 aoxb Aminobacter sp. 86 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Aminobacter; 1.069144082 1.036892648 1.010849671 1.034786246 1.001326033 1.038530926 0.994697922 1.02207184 1.03366987 0.983330757 1.010053769 1.035314838 1.003419003 1.0113791 1.006018814 1.026813242 1.051210462 1.02525794 120406746 cutinase Mycobacterium vanbaalenii PYR-1 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 0.956006314 0.914435364 0.953837128 0.906085105 0.932288065 0.910982863 0.925187547 0.885014932 0.935594519 0.89872224 0.901749271 0.883522801 0.898076336 0.888800987 0.889061558 0.914233274 0.934655568 0.939177682 157371777 ppx Serratia proteamaculans 568 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia proteamaculans; 0.89516509 0.794932029 0.862394472 0.898973691 0.856081841 0.809368304 0.887470283 0.908311089 0.847922404 0.848677167 0.855071421 0.868094522 0.838556642 0.816479604 84683424 phn Maritimibacter alkaliphilus HTCC2654 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Maritimibacter;species:Maritimibacter alkaliphilus; 1.19209693 1.114980926 1.028826992 1.110352167 1.129280909 1.068101984 1.138014825 1.057971612 1.043396966 1.033191041 1.001528474 1.177449245 1.023753943 1.015245017 0.998608405 1.019649272 1.054614684 1.096754619 238497984 lactase_fungi Aspergillus flavus NRRL3357 Carbon Cycling Carbon degradation Lactose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus flavus; 0.791267292 0.852976698 0.860669052 0.839489129 0.894386408 0.818208244 0.862428362 0.869161576 0.833309608 0.862939269 0.841445246 0.858455156 0.856177425 251787711 xyla Dickeya zeae Ech1591 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya zeae; 0.90180037 0.869406736 0.828414061 0.901995132 0.828652771 0.893186499 0.836956163 0.81106691 0.921580795 0.871761076 0.841795237 0.857562231 0.873220285 0.817561539 0.859078878 0.904641174 0.898968805 26985946 soxY Chlorobium limicola f. thiosulfatophilum Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobaculum; 0.840953391 0.959562929 0.836209967 0.953418732 0.896836351 0.957080117 0.986016161 0.853450655 1.101166517 0.818960323 0.938058314 0.953210038 0.932829853 0.837947446 0.892684939 0.926030644 269218802 amyA Actinomyces sp. oral taxon 848 str. F0332 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 848; 1.000902838 1.006830693 0.968487175 1.023812277 0.993166217 1.009432629 0.983385232 0.985946749 1.027774742 0.966744833 1.012027788 1.018977798 0.98059842 0.936131712 0.978703995 0.984054193 0.997031447 0.995926927 269790850 merb Thermobaculum terrenum ATCC BAA-798 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;genus:Thermobaculum;species:Thermobaculum terrenum; 1.097060388 1.106619888 1.127968242 1.111657945 1.12767208 1.089341974 1.138464238 1.138631806 1.122497845 1.123162141 1.104309687 1.136014897 1.075733825 1.051945335 1.074584236 1.07443683 1.1064206 1.086341434 259033879 rubisco Mesorhizobium opportunistum WSM2075 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium opportunistum; 1.130146411 1.090809847 1.086997069 1.1236721 1.057136445 1.132264519 1.082714543 1.109220943 1.124803511 1.080435235 1.063595912 1.090782489 1.067240135 1.066289076 1.075105015 1.095223707 1.132300016 1.054190764 106889315 amyA Roseiflexus sp. RS-1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus; 0.967342952 0.948950999 1.012842719 1.019319545 0.958279285 0.966107054 0.897680234 1.01431575 1.028839631 0.951971123 0.996616925 1.023128741 0.96111389 0.908156931 0.957395266 0.982099217 0.999638875 0.949784234 46520015 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.926586727 0.864909071 0.879324002 0.872031241 0.903615308 0.906232216 0.920623241 0.942338256 0.899064261 0.866281722 0.912023481 0.866847002 0.820814715 0.851611783 0.823901541 0.851927815 217970480 xylj Thauera sp. MZ1T Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Thauera; 1.178018383 1.146985713 1.12852729 1.133503536 1.08399718 1.164532571 1.112188941 1.197080431 1.128387427 1.141331304 1.103969901 1.115755571 1.115110693 1.119637218 1.004815864 1.107700528 1.154359906 1.146920184 37924870 nifh uncultured nitrogen-fixing bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.826314256 0.862508397 0.802261235 354615120 poba Saccharomonospora paurometabolica YIM 90007 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora paurometabolica; 0.985534515 0.986181922 0.974076408 0.989247554 0.942733537 0.963988839 0.912456592 0.999302738 0.941090798 0.925731838 0.908962768 0.965553269 0.886043244 0.926927712 0.846142051 0.922571842 0.986156258 1.005943922 95114206 alkb Rhodococcus sp. SoF Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 1.247439686 1.236630355 1.195764139 1.248705548 1.187548324 1.211388868 1.174212094 1.180688355 1.210306471 1.197170833 1.185508405 1.201408911 1.173105474 1.174688991 1.155867161 1.181343637 1.253561248 1.202283094 169005276 ara Paenibacillus sp. JDR-2 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 0.773058491 0.795898918 0.782205233 0.827212026 0.819575987 0.762478899 0.799553492 0.810758571 116634785 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.063503842 1.064563832 1.035330843 1.075377429 1.052801407 1.029424851 1.066818748 1.049276347 1.081167826 1.015863184 1.020560682 1.083398337 1.025179962 1.001831482 1.042974492 1.049138671 1.053535164 1.020543913 81250756 pgk Nitrosospira sp. NIJS16 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosospira; 1.070970478 1.069615038 0.990894151 1.08632814 1.007888163 1.025559312 1.009144841 1.021102148 1.015093407 1.018805583 1.006227289 1.013585069 0.993587874 0.99320635 0.963152257 1.022695075 1.058500283 1.039488727 297155581 pectinase (pectate_lyase) Streptomyces bingchenggensis BCW-1 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces bingchenggensis; 1.307974195 1.290437989 1.270479149 1.296005144 1.252282745 1.328664752 1.231213872 1.253245158 1.25661281 1.284129622 1.266663488 1.262512628 1.228375254 1.254067671 1.216979967 1.250489819 1.312000392 1.276720629 237800695 cysI Pseudomonas syringae pv. oryzae str. 1_6 Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas coronafaciens; 0.885660149 0.836835027 0.86357846 0.858620267 0.893371985 0.815409639 0.886440182 0.874285622 0.879679934 0.855730587 0.855571268 0.836981797 0.82258371 0.849589264 99083393 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.879890538 0.823366872 0.866559026 0.897035679 0.943604538 0.848620321 0.878873138 0.816354491 0.820712972 0.889563212 0.843548013 0.801250741 323139035 tktA Methylocystis sp. ATCC 49242 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylocystaceae;genus:Methylocystis; 1.133859168 1.099169855 1.107592531 1.142408916 1.166819054 1.099952318 1.132256355 1.117007327 1.133449285 1.100686728 1.115013468 1.12988208 1.08983893 1.062883135 1.057732185 1.089577117 1.13414246 1.08190326 49530417 GAPDH_Calvin Acinetobacter sp. ADP1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 0.911933302 0.907436357 0.931210745 0.808113604 0.873288015 0.897891251 0.861249695 0.877318406 0.887820921 0.933552832 0.916483152 0.838370727 0.853769306 0.978411788 0.923178158 0.834997221 0.901872497 0.90989263 188026261 nrfa Providencia stuartii ATCC 25827 Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia stuartii; 1.126143029 1.070241081 1.080156441 1.059717943 1.071700823 1.165834619 0.938440005 0.99360592 1.073387778 1.124390876 1.147768343 1.091798522 1.048041368 1.070274082 1.000178643 1.032125013 1.178430782 1.073582134 226316995 ppx Deinococcus deserti VCD115 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus deserti; 1.108661485 1.044905871 1.061334064 1.090435791 1.175252274 1.073874055 1.06818012 1.097269672 1.089471888 1.068375944 1.043011567 1.079907431 1.047121792 1.021377623 1.028081948 1.03833261 1.080469898 1.060498808 322437536 amyA Granulicella tundricola MP5ACTX9 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Granulicella;species:Granulicella tundricola; 0.761301028 0.842590582 358050470 glucoamylase Pseudoalteromonas sp. BSi20495 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas; 1.090563614 1.068699381 1.041910232 1.09643681 1.044158427 1.081479059 1.061913107 1.04848333 1.058619226 1.053165471 1.049359566 1.078593867 1.027591016 1.05557744 1.000502194 1.03528132 1.096409013 1.070302211 372474791 RgaE Opitutaceae bacterium TAV5 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 0.875857658 0.888003822 0.84852105 0.848959647 0.895413495 0.934735233 0.84176854 0.888732978 0.897321226 0.899614393 0.866372436 0.874458405 0.859128668 0.828196231 0.984927245 0.951753646 359836553 endoglucanase Actinoplanes sp. SE50/110 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes; 1.080021718 1.105401477 1.105898341 0.92499741 1.013179282 1.116613634 0.977248176 1.029950205 0.975086149 1.075860035 1.080465135 1.075457119 1.022170621 1.128755456 1.060622843 1.040254178 1.048503679 1.096187724 156857707 aps_apra uncultured bacterium Sulfur adenylylsulfate reductase NA superkingdom:Bacteria; 0.807294467 0.831919496 0.818023369 0.778644725 0.839320158 0.871789589 0.833715918 0.849047303 0.815297741 0.811830938 0.795161743 115383904 phospholipase_A2_fungi Aspergillus terreus NIH2624 Carbon Cycling Carbon degradation Phospholipids superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 0.780117753 0.797202165 0.769327457 0.833913946 0.805547758 0.796384295 114326873 ppx Granulibacter bethesdensis CGDNIH1 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Granulibacter;species:Granulibacter bethesdensis; 0.789516171 0.799191529 0.81269848 0.833299906 0.794674588 0.854086162 0.807453469 0.806231964 85837790 endochitinase Vibrio sp. MED222 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 0.780690521 0.825493919 0.772674866 0.827936647 119401909 nagg Aspergillus clavatus NRRL 1 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 1.315336469 1.245290646 1.248042016 1.27714774 1.239670266 1.305874916 1.248759804 1.24520372 1.266499791 1.24681428 1.245980083 1.263610405 1.245257725 1.258341605 1.225751707 1.259128809 1.28836395 1.255272163 352113941 rubisco Natrinema pellirubrum DSM 15624 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Natrinema;species:Natrinema pellirubrum; 1.028167019 0.988084638 0.998269472 1.035594269 1.012797489 1.006200331 1.057662322 1.035505311 1.012723752 0.999905495 1.015164039 1.000339128 1.005563823 0.921781461 0.921101673 0.920280039 0.989171308 7717204 nifh Vibrio diazotrophicus Nitrogen Nitrogen fixation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 0.846342836 0.805280967 0.827572494 0.822867525 0.866825242 0.8095864 0.836845345 99035681 dehh109 Ruegeria sp. TM1040 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 0.936890328 0.972431621 0.952118948 0.959275548 0.861936289 0.961869829 0.818030934 0.896612897 0.941922581 0.96934488 0.888531078 0.898317812 0.823339333 0.920144573 0.918905975 0.945511113 1.002930675 0.980664846 381382375 amyA Caldilinea aerophila DSM 14535 = NBRC 104270 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Chloroflexi;class:Caldilineae;order:Caldilineales;family:Caldilineaceae;genus:Caldilinea;species:Caldilinea aerophila; 1.002195254 0.992110392 0.987967084 0.995056578 0.973013422 0.995819128 0.946991413 0.942947834 0.998012727 0.985054132 0.944018442 0.974983172 0.95214481 0.94982912 0.891746295 0.936059669 1.025327393 0.998824565 358069532 xylj Burkholderia cenocepacia H111 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cenocepacia; 0.901516535 0.935000301 0.857629235 0.883871735 0.852824363 0.897291073 0.813675471 0.831353168 0.89450285 0.82781873 0.881061278 0.90848247 0.874344397 0.873717274 0.832400718 0.842082015 0.907421073 0.962539822 298384404 heparinase Bacteroides sp. 1_1_14 Carbon Cycling Carbon degradation Heparin superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides; 0.904276876 0.829090087 0.878390325 0.823279876 0.903408096 0.888923169 0.820398355 0.779425966 0.865242883 0.813919502 0.805948632 0.826523318 0.879407609 0.92283542 0.827832504 0.848519166 0.875666257 90206044 tfth Mycobacterium vanbaalenii PYR-1 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 0.787497331 0.804765425 0.855254619 0.78992027 0.828053535 0.823838311 76058226 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.823344313 0.779940961 0.786608373 0.818235249 228551851 alkb Alcanivorax dieselolei Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax; 0.840586299 0.839543118 0.911097903 0.860201336 0.831020676 0.876360023 0.89730713 0.85483365 0.847065594 0.813920129 0.864400095 0.837350072 0.809489612 0.834276957 0.894425442 0.845119583 332108650 phytase Rubrivivax benzoatilyticus JA2 Phosphorus Phytic acid hydrolysis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Rubrivivax;species:Rubrivivax benzoatilyticus; 1.349806662 1.295694703 1.311170005 1.310750359 1.292326071 1.312216959 1.261929952 1.27940283 1.303364008 1.295026438 1.297104004 1.305768159 1.284659223 1.251294584 1.265313277 1.262236364 1.327991066 1.277497138 133737732 FBPase Herminiimonas arsenicoxydans Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herminiimonas; 0.827028682 0.910956369 0.863205821 0.858458849 0.879108702 0.8612969 0.820359399 0.789854434 0.793841451 0.897844801 0.819850084 0.810606349 0.860754184 0.871362302 0.839282762 0.845997353 0.81814224 0.878371876 378548435 one_ring_12diox Citricoccus sp. CH26A Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Citricoccus; 0.87452691 0.895844513 0.870993326 0.820188328 0.800976011 0.87994371 0.813640068 0.870539126 0.917412343 118468324 cdh Mycobacterium smegmatis str. MC2 155 Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 1.251773445 1.227660526 1.224258148 1.239554508 1.189997515 1.233111052 1.219457096 1.202454777 1.214191541 1.207872563 1.2216271 1.222775667 1.176975775 1.164966173 1.187646867 1.208200705 1.272548058 1.202740787 284013206 mer Haloterrigena turkmenica DSM 5511 Metal Homeostasis Mercury Detoxification superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloterrigena;species:Haloterrigena turkmenica; 0.96377704 1.06269923 1.031057394 1.058417142 0.98648133 1.00638668 0.903311877 0.963636763 0.955182683 1.081122821 1.079907234 1.026877779 1.005716578 1.020628603 0.992101811 1.000031885 0.979482362 1.028366599 413961477 catechol Burkholderia sp. SJ98 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 0.830583024 0.829679715 0.82530413 0.811026403 0.809383368 0.840815388 0.827435154 0.826587903 0.815649907 0.862518427 0.82781644 323366320 nifh uncultured microorganism Nitrogen Nitrogen fixation NA 1.204666938 1.173292968 1.200864991 1.200503164 1.21098939 1.198054044 1.205751918 1.197653627 1.189646608 1.19814816 1.215735893 1.213625752 1.199500701 1.119421353 1.147846193 1.141558633 1.190149721 1.169291876 302547729 cmci Streptomyces hygroscopicus ATCC 53653 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces himastatinicus; 1.041900012 1.007868376 1.028927962 1.020163864 1.04747692 1.100012134 1.064834395 1.086212648 1.046639807 1.062687797 1.160105802 1.038878805 1.050615016 1.107792597 0.992865 1.012860041 1.046531185 0.95329541 386000764 nifh Methanosaeta harundinacea 6Ac Nitrogen Nitrogen fixation NA superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosaetaceae;genus:Methanosaeta;species:Methanosaeta harundinacea; 1.133311669 1.137971634 1.119262802 1.124656105 1.110397783 1.156809634 1.112927756 1.114328809 1.105738395 1.139168884 1.107367096 1.115568377 1.105109766 1.080793579 1.040323219 1.082037188 1.157683107 1.10255903 291345361 bphF1 Streptomyces ghanaensis ATCC 14672 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces ghanaensis; 1.164998734 1.186202782 1.15713657 1.143852043 1.172658646 1.199169612 1.162529544 1.161248747 1.144802362 1.182365036 1.166765613 1.183445966 1.163837352 1.174043023 1.144511954 1.169580091 1.159293881 1.166173419 90336218 mer Aurantimonas sp. SI85-9A1 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Aurantimonas;species:Aurantimonas manganoxydans; 1.437214729 1.389650074 1.41855198 1.435735996 1.40453502 1.448687066 1.402632702 1.435760539 1.404884937 1.398707596 1.401906695 1.412532164 1.376588171 1.370404808 1.373969275 1.404811229 1.425657659 1.389324387 94471347 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.020303309 1.00625007 0.96813068 0.955408403 0.970724139 0.996998911 0.918903757 0.936152113 0.968054293 0.939312712 0.923795515 0.95780216 0.953975201 0.9323251 0.895755045 0.923242736 0.990233335 1.013963141 74038416 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.949085751 0.986526854 0.906873737 0.934113992 0.927569173 0.922560228 0.905615151 0.900404349 0.935705615 0.932934828 0.910772724 0.946500233 0.93760054 0.950087111 0.900630776 0.922755481 0.982267646 0.995563565 302446141 xylg Streptomyces sp. C Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 1.150816431 1.170017821 1.15979499 1.191068757 1.159699223 1.174496745 1.15260419 1.180562666 1.137657807 1.13533291 1.145251544 1.15196666 1.118238278 1.112596739 1.081807862 1.098860675 1.138632575 1.155395764 298549763 amyA Deinococcus geothermalis DSM 11300 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus geothermalis; 1.019234271 1.023634112 0.919537052 0.990692754 0.966238827 0.998185849 0.934890374 0.959725079 0.969086718 0.989752739 0.992164421 1.014924923 0.916495963 0.955712253 0.916292813 0.922234222 0.985283862 1.021190245 3157702 nifh unidentified nitrogen-fixing bacteria Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.853365259 0.804518473 0.840345759 0.807463065 0.84054039 0.821950009 0.784876277 297165499 xylanase Truepera radiovictrix DSM 17093 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Trueperaceae;genus:Truepera;species:Truepera radiovictrix; 0.903332773 0.889043616 0.909472979 0.923401003 0.905146624 0.863417115 0.89269634 0.919088065 0.850326631 0.832895851 0.885590997 0.87151693 0.875997948 0.909347644 374656893 terc Saccharomonospora marina XMU15 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora marina; 1.003483336 0.96174667 0.915399926 0.951997897 0.937231735 0.953531503 0.953547226 0.962987147 0.956688567 0.936830076 0.935113222 0.960725379 0.918548815 0.917074406 0.90181962 0.93906876 0.94384409 0.93629141 407255075 atza Alcanivorax dieselolei B5 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax;species:Alcanivorax dieselolei; 0.992873856 0.990149871 0.965208915 1.025235845 0.926956561 1.032977282 1.014578089 1.012757779 0.976745218 0.981732372 0.926829379 1.008132247 0.925194517 0.946483988 0.854536458 0.88543902 0.968951301 1.025178319 26278844 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.086640885 1.107148347 1.071387255 1.065503339 1.118697134 1.107210454 1.076404516 1.007359786 1.078608674 1.125142071 1.068443303 1.124758049 1.094871261 1.062752478 1.113348289 1.080218513 1.083544544 1.099059138 255510429 dsra Clostridium carboxidivorans P7 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium carboxidivorans; 0.939238216 1.027273605 1.02411172 0.961570295 0.97778365 0.963226273 0.906778917 0.926772327 0.939037721 1.015162396 0.939454416 0.943296528 0.963839287 0.910852864 0.946751255 0.917385188 0.941963834 0.926253352 332638276 terc Weissella cibaria KACC 11862 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Leuconostocaceae;genus:Weissella;species:Weissella cibaria; 0.895697632 0.842774516 0.847176445 0.92837237 0.906044068 0.854107892 0.887966001 0.914222175 0.922675194 0.835557318 0.796306047 0.851385733 0.83706352 0.868968065 0.90268098 0.887770173 0.807322311 220683606 amyA Arthrobacter aurescens Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 0.820801546 0.843427415 0.857888531 0.866871167 0.856883278 0.850211153 0.8793482 0.865840576 0.854138224 0.909290711 1.05486828 0.846824844 0.882001608 0.829625678 0.866820796 0.848524977 0.837264303 148567463 nifh Roseiflexus sp. RS-1 Nitrogen Nitrogen fixation NA superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus; 0.936522429 0.948841224 0.93364472 0.957039331 1.001395375 0.903281304 0.969327116 0.969257777 0.99939749 0.951792474 0.950701499 1.010483619 0.958311209 0.938952139 0.974319345 0.949832212 0.947628296 0.919333236 115370210 endochitinase Stigmatella aurantiaca DW4/3-1 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 0.958717678 0.940067808 0.945120545 0.990828289 0.967481846 0.969011961 0.982962132 0.988563751 0.961274553 0.958116978 0.935178955 0.959102749 0.958155196 0.963338695 0.91170435 0.929809217 0.972441265 0.921075238 320334700 cda Deinococcus maricopensis DSM 21211 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus maricopensis; 1.187423604 1.188045306 1.15721509 1.216096044 1.20664561 1.234606963 1.199836654 1.207427182 1.170548702 1.182033793 1.201132029 1.201191384 1.21296127 1.190275612 1.163237408 1.199871804 1.201302638 1.166337014 371550701 urec Streptomyces coelicoflavus ZG0656 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicoflavus; 0.842998068 0.867226005 0.785583075 0.825348474 0.854662311 0.825764561 0.876520881 117613120 arsc Shewanella sp. ANA-3 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella; 1.118889856 1.109356834 1.141049673 1.127231045 1.134660436 1.170706717 1.11058904 1.100200561 1.10449645 1.152933263 1.138700176 1.140787731 1.077913178 1.122688016 1.070373584 1.085756803 1.12060331 1.140323323 336030298 PRK Mesorhizobium opportunistum WSM2075 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium opportunistum; 0.809215376 0.842652812 0.834746792 0.817043403 0.822639253 0.79682987 0.80440495 0.848275275 196176253 endoglucanase Microcoleus chthonoplastes PCC 7420 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Coleofasciculus;species:Coleofasciculus chthonoplastes; 0.808038875 0.837973299 0.897482913 0.873191207 0.889704199 0.855786402 0.903439 0.876548408 0.827142798 0.810620112 0.871160326 289523723 CsoS1_CcmK Anaerobaculum hydrogeniformans ATCC BAA-1850 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Synergistetes;class:Synergistia;order:Synergistales;family:Synergistaceae;genus:Anaerobaculum;species:Anaerobaculum hydrogeniformans; 1.280969729 1.260854189 1.267217686 1.243786276 1.240614786 1.261977221 1.238967054 1.273104824 1.271283013 1.248895972 1.227181846 1.275311601 1.208623615 1.2111571 1.175163191 1.225494552 1.29128263 1.25943676 383770513 tktA Bradyrhizobium sp. S23321 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.831935321 0.860702425 0.846941466 0.883694308 0.86162693 0.839771493 0.866484356 0.899401916 0.875757522 0.862862898 0.869783552 0.819757616 0.810605125 0.823995102 0.798879501 0.8532466 365817838 oxdb Patulibacter sp. I11 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Solirubrobacterales;family:Patulibacteraceae;genus:Patulibacter; 0.942428563 0.99939876 0.927436376 0.96116406 0.91463888 0.975151535 0.91376461 0.94700403 0.927313955 0.982366619 0.916566298 0.95445632 0.963278643 0.977799054 0.876163557 0.935915608 1.003006679 1.013773357 261286292 amyA Geobacillus sp. Y412MC10 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 0.829344645 0.843588715 0.815969951 0.815164572 0.8017855 0.826088652 363984374 ppx Thermanaerovibrio velox DSM 12556 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Synergistetes;class:Synergistia;order:Synergistales;family:Synergistaceae;genus:Thermanaerovibrio;species:Thermanaerovibrio velox; 0.983201801 0.920462038 0.93103335 0.997842637 0.933129191 0.90251989 1.014171477 0.978327618 0.988670186 0.91119157 0.928403019 0.971475366 0.896775198 0.890594376 0.981149627 0.945834546 0.946073604 0.878382761 209959496 b_lactamase Rhodospirillum centenum SW Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum centenum; 1.696193356 1.669027055 1.652590638 1.63775802 1.628283344 1.683362656 1.613472737 1.649085492 1.628819148 1.626466821 1.643023913 1.634574722 1.61183601 1.610329128 1.638733467 1.624903422 1.642889279 1.629747285 310782162 fthfs Aminomonas paucivorans DSM 12260 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Synergistetes;class:Synergistia;order:Synergistales;family:Synergistaceae;genus:Aminomonas;species:Aminomonas paucivorans; 1.185748676 1.148084004 1.134446432 1.210557315 1.135213238 1.190714927 1.13495023 1.16281014 1.174603654 1.145052713 1.147043789 1.160543192 1.136478817 1.142686874 1.132590012 1.166296769 1.189473833 1.1478601 151302272 aps_apra Desulfospira joergensenii Sulfur adenylylsulfate reductase NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfospira; 1.056530599 1.035677651 1.060038871 1.051520429 1.065333501 1.077410006 1.059059691 1.055167763 1.045668321 1.089192035 1.083054947 1.064175876 1.044722593 1.014749236 0.976858805 1.028549717 1.062626658 1.065599476 38233112 narg Corynebacterium diphtheriae NCTC 13129 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium diphtheriae; 1.292099296 1.275308576 1.258868654 1.276386736 1.261770802 1.298455577 1.269330011 1.241473961 1.247397616 1.236615621 1.25935863 1.245801325 1.232685624 1.217134403 1.223170936 1.266381188 1.268614026 1.245292936 73763040 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.899104173 0.952502383 0.918728109 0.899218771 0.944000998 0.897568998 0.925556043 0.898870757 0.91254032 0.894152418 0.892798492 0.923405301 0.878967035 0.890074479 0.8648027 0.918917938 0.905115017 0.964431735 336316058 cda Rheinheimera sp. A13L Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Rheinheimera; 0.837759753 0.779547813 323341153 gdh Lactobacillus ruminis ATCC 25644 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus ruminis; 0.85807667 0.849177605 0.818774689 0.901279904 0.794434782 0.824692369 0.876040375 0.898000234 0.857293718 0.864886318 0.838454921 0.886060995 0.881534557 381398867 poba Microbacterium laevaniformans OR221 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Microbacterium;species:Microbacterium laevaniformans; 0.839033858 0.891330136 0.87981428 0.853483841 0.875271197 0.849964986 0.826412468 0.86221661 0.848226825 0.876127287 0.837115912 0.826840781 0.842646454 0.86821039 0.856219118 0.872582925 323471433 pcpe Arthrobacter phenanthrenivorans Sphe3 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter phenanthrenivorans; 1.140283239 1.189229006 1.157424313 1.168732261 1.158718296 1.216285767 1.173983698 1.16206048 1.147189196 1.186358113 1.177994825 1.144278203 1.153678624 1.143679531 1.118425831 1.139541326 1.166210371 1.178666181 120403007 chnb Mycobacterium vanbaalenii PYR-1 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 0.849140807 0.896076124 0.822803348 0.873283772 0.845212944 0.867319383 0.835090603 0.856880717 0.887180272 0.854134899 0.82252037 0.863653832 0.835278 0.868018803 0.870202346 256672487 urec Streptomyces sp. AA4 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 1.023157685 1.039666167 0.991999144 0.992852051 0.992704692 1.041550645 0.991725101 0.975297794 0.999098757 0.985173143 0.953894544 0.993446563 0.984411638 0.982882974 1.005179941 0.98227344 1.016150201 1.014342603 183581743 amyA Kocuria rhizophila DC2201 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Kocuria;species:Kocuria rhizophila; 0.968882183 0.976745031 0.881446614 0.934562286 0.934265653 0.940061663 0.948612175 0.917247585 0.949696369 0.970306339 0.93020227 0.930953625 0.889628104 0.902533545 0.951835084 0.880363688 0.928825104 0.978135795 330992278 FBPase Gluconacetobacter sp. SXCC-1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter; 1.367374549 1.342397025 1.327712016 1.3549923 1.324526383 1.356494694 1.325703207 1.347644317 1.337520665 1.327033737 1.325330915 1.341350707 1.301188789 1.275086168 1.281055253 1.306871571 1.352038209 1.334535386 383339800 amyA Mycobacterium phlei RIVM601174 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium phlei; 1.195848721 1.194153719 1.196841747 1.198284095 1.200774625 1.211786452 1.188395169 1.197943379 1.169751574 1.168191922 1.207452231 1.191390427 1.205638792 1.141704713 1.178121617 1.187028795 1.220417985 1.168277225 260223404 vana Curvibacter putative symbiont of Hydra magnipapillata Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Curvibacter; 1.060433512 1.09517056 1.120972023 1.078717329 1.079389193 1.082269695 1.04482438 1.045381032 1.097417286 1.016173205 1.031136365 1.067664326 1.042375739 1.025712677 1.02269422 1.068713483 1.118801107 1.036833325 409104266 thl Thermacetogenium phaeum DSM 12270 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Thermacetogenium;species:Thermacetogenium phaeum; 0.967263211 0.931006217 0.938209673 0.983002738 0.976243579 0.942775768 0.962058006 0.95558467 0.959578238 0.915438045 1.047743927 0.946609744 0.906598004 0.857501316 0.916652992 0.902573736 0.957164246 0.933455416 87198564 bend Novosphingobium aromaticivorans DSM 12444 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium aromaticivorans; 0.923004965 0.801354646 0.895171739 0.918918839 0.899744355 0.838735373 0.864395591 0.888878773 0.932232595 0.874661133 0.840650175 0.897727806 0.841459283 0.879097052 0.862830439 0.902663907 0.849060331 192764410 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.034745561 1.042037618 0.944882789 1.013520039 0.964460952 1.076441192 1.013206369 0.946669457 0.98937227 1.004179778 1.007241415 0.979242279 1.021655852 0.985413799 0.978756961 0.986920564 1.02885977 1.034461028 46850308 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.223247548 1.193545227 1.211333604 1.232232296 1.223355113 1.244798113 1.218443287 1.230519899 1.207754731 1.186200559 1.206831274 1.227697418 1.206213187 1.19387187 1.218595726 1.190723836 1.220755404 1.192018681 167352366 dmsa Shewanella halifaxensis HAW-EB4 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella halifaxensis; 0.808259225 0.836048734 0.795387485 223586081 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.082054111 1.079858803 0.994915286 1.051898761 1.068168176 1.098048425 1.051873449 1.029704415 1.067300959 1.06927445 1.040520423 1.083453486 1.045869008 1.033868548 1.020014534 1.056176448 1.071569419 1.089886143 325953370 vana Nocardioidaceae bacterium Broad-1 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae; 1.416519855 1.386897744 1.387348425 1.36427156 1.382820073 1.433657178 1.377461677 1.375727796 1.350811045 1.375848573 1.361539911 1.349284477 1.36204726 1.335375226 1.296252365 1.332139103 1.381476611 1.369601868 146312868 cysJ Enterobacter sp. 638 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 0.864846601 0.857524715 0.91242825 0.831470073 0.884900983 0.85293092 0.903431736 0.858773646 0.875528027 0.920675838 0.888505559 0.866426485 0.895733021 0.885035185 0.85332677 0.842895029 0.8992323 0.912043981 239834014 cmci Ochrobactrum intermedium LMG 3301 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum intermedium; 0.852142505 0.864073258 0.836819663 0.910495266 0.848468607 0.89655125 0.846907633 0.841731387 0.869879261 0.896945815 0.877269689 0.876187487 0.866222191 0.854542006 0.884976592 0.887386762 0.874467235 296169492 mhpb Mycobacterium parascrofulaceum ATCC BAA-614 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium parascrofulaceum; 1.077282986 1.0975997 1.04416201 1.084266427 1.017691833 1.064812766 1.013973093 1.054016736 1.068936833 1.063954583 1.023283508 1.063024497 1.005103261 1.023990495 0.97909135 1.006769168 1.060900758 1.081089968 154246680 trzn Xanthobacter autotrophicus Py2 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 1.076093589 1.083677664 1.01839497 1.106967115 1.012166509 1.067149036 1.017017114 1.043600251 1.06357924 1.069801687 1.045898278 1.047717532 1.013577615 0.978713009 0.999086449 1.041952819 1.063680359 1.081760164 225871773 endoglucanase Acidobacterium capsulatum ATCC 51196 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Acidobacterium;species:Acidobacterium capsulatum; 1.06497275 1.04945787 1.06233667 1.066263005 1.060212013 1.02093603 1.035702703 1.055064505 1.049035264 0.991712275 1.072121089 1.046111531 1.018749131 0.943477989 0.988209374 0.970900215 1.027459956 0.999806835 328915692 tktA Pseudomonas mendocina NK-01 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas mendocina; 0.989831754 0.93321257 0.969552527 0.98580839 0.918297756 0.960528034 0.876705819 0.94394559 0.963133244 0.945996779 0.947480803 0.929821894 0.949005154 0.952939943 0.924977863 0.956336506 0.990502468 0.938961912 78926954 endoglucanase uncultured bacterium Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria; 1.172174132 1.152402034 1.158806914 1.185426429 1.13520627 1.163959085 1.15593806 1.185993496 1.16588768 1.148226967 1.136063187 1.159094597 1.123713704 1.1047048 1.117225885 1.134670394 1.181672349 1.114614351 82523664 mcra uncultured archaeon Carbon Cycling Methane Methanogenesis superkingdom:Archaea; 1.282669185 1.241817753 1.207621317 1.233967419 1.224934845 1.214924824 1.208892875 1.197955098 1.259205118 1.242707238 1.21086596 1.244582149 1.184634497 1.17704807 1.163743343 1.199940945 1.262380017 1.238781952 318056181 sqr uncultured bacterium Sulfur Sulfide Oxidation NA superkingdom:Bacteria; 1.196782962 1.172170848 1.159444436 1.169387795 1.149169593 1.165100835 1.153166696 1.153835206 1.192706644 1.127402668 1.147790508 1.181564058 1.134716697 1.100433849 1.112711365 1.131391921 1.187760344 1.160239503 46358547 p450aro Phanerochaete chrysosporium Organic Remediation Aromatics polycyclic aromatics superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Corticiales;family:Corticiaceae;genus:Phanerochaete; 0.834718734 0.817494973 0.870874613 0.861285005 0.832424036 0.835376943 0.833477637 0.838139015 0.869065382 0.825599701 0.812490602 0.840065036 0.859346948 0.856664974 300690710 cysI Ralstonia solanacearum PSI07 Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 1.129787329 1.127120715 1.043514375 1.100496204 1.053665615 1.075372653 1.035939301 1.03365363 1.117929104 1.04873436 1.014990068 1.06854647 1.018586556 1.048128222 0.969424496 1.027941873 1.098770618 1.106205363 258511918 dehh109 Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Alicyclobacillus;species:Alicyclobacillus acidocaldarius; 1.20778795 1.221384966 1.188082959 1.179329743 1.176005343 1.214070912 1.168981927 1.170276465 1.157952229 1.187292675 1.171169868 1.174285 1.171156405 1.161812029 1.158915549 1.155189468 1.207308885 1.21541471 291436737 bphd Streptomyces ghanaensis ATCC 14672 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces ghanaensis; 0.964898621 0.918520696 0.87943856 0.941533632 0.863801721 0.903454896 0.875911813 0.921417037 0.89509375 0.837813784 0.899556164 0.834900101 0.859592074 0.867569228 0.86799121 0.90941874 0.920814753 116077919 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.931080443 1.011248977 0.909297743 0.998438077 0.928384188 0.97837855 0.891667023 0.943950532 0.936430039 0.942304317 0.925430019 0.949675301 0.906009099 0.917990265 0.945997175 0.905606867 0.957369618 0.995472939 145575765 alkb Pseudomonas mendocina ymp Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas mendocina; 1.165526637 1.161422335 1.153253725 1.175732842 1.136459014 1.148976043 1.146059269 1.136234897 1.170221277 1.143771715 1.129247662 1.155083051 1.092730681 1.126893276 1.0829142 1.111059943 1.154269805 1.164006891 156744239 MCM Roseiflexus castenholzii DSM 13941 Carbon Cycling Carbon fixation 3-hydroxypropionate bicycle superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus;species:Roseiflexus castenholzii; 1.062353087 1.069698086 1.097845736 1.061789562 1.085922721 1.086888539 1.065003542 1.071951306 1.051754623 1.050031045 1.062936774 1.051078712 1.041762375 1.023570773 1.025196696 1.049350705 1.075085268 1.099169356 224924161 phenol_oxidase Pycnoporus sanguineus Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Polyporaceae;genus:Pycnoporus; 1.193770261 1.275356042 1.208504837 1.161041759 1.146764417 1.215932507 1.158880771 1.197055415 1.146774467 1.184069792 1.184143598 1.174066165 1.139607782 1.179443489 1.115498646 1.150039769 1.178910443 1.193559242 340841897 nirs uncultured denitrifying bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.864918269 0.885272714 0.882664251 0.855743827 0.869597743 0.848094921 0.873572795 0.834645399 0.84702295 0.853780178 0.827538973 0.843593423 0.917441197 0.903729579 315249909 RgaE Prevotella buccae ATCC 33574 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella buccae; 1.216623952 1.287850777 1.205398461 1.225179467 1.209497036 1.26462934 1.183979159 1.191469335 1.191058238 1.211662201 1.207452022 1.203613648 1.211334454 1.206235855 1.160892408 1.224073652 1.231584877 1.237233929 405379257 pcag Rhizobium sp. CF142 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 0.809519539 0.852201288 0.832456415 0.831314106 0.781491069 0.823669171 0.802745515 0.832808683 0.82952618 0.843987886 0.842301051 0.807152049 227832909 amyA Corynebacterium aurimucosum ATCC 700975 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium aurimucosum; 0.856026052 1.0303274 0.976638088 0.99515897 1.000687778 1.059242321 0.915414471 0.958615449 0.943164762 0.997735204 0.887006492 0.953898655 0.95189868 0.957479741 0.905581088 0.970660753 0.975886192 1.00720339 26278834 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.893650957 0.847708905 0.905483781 0.900595001 0.849849712 0.872722184 0.876960759 0.839546352 0.827154717 0.865127704 0.842330146 0.884677915 0.900425077 0.832874951 0.887729757 0.837216301 0.942432906 0.873958855 195931897 catechol Williamsia muralis Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Williamsiaceae;genus:Williamsia; 1.151556196 1.078457807 1.14328616 1.129144097 1.128933935 1.172342818 1.109202195 1.130194921 1.104443802 1.106024609 1.115311442 1.131941908 1.075843269 1.110513024 1.122049113 1.081908135 1.127334832 1.119546811 171060987 cellobiase Leptothrix cholodnii SP-6 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Leptothrix;species:Leptothrix cholodnii; 0.926561916 0.935166196 0.933875662 0.903557479 0.829930703 0.881981458 0.833213201 0.923909615 0.946787701 0.933629631 0.894071547 0.936029618 0.858693026 0.874737173 0.83952235 0.878563536 0.950871468 0.971335543 226188362 bphF1 Rhodococcus erythropolis PR4 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 0.894549777 0.886889535 0.827353963 0.838798414 0.807716921 0.837295758 0.845691122 0.847205728 0.819282317 0.807989605 0.842424203 0.910309 167698612 amyA Bacteroides stercoris ATCC 43183 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides stercoris; 0.932160286 0.907819273 0.935484042 0.955771101 0.912083978 0.906196958 0.910365115 0.93652619 0.926256584 0.912146617 0.902916597 0.921518718 0.879739909 0.910267993 0.917639595 0.898544382 0.933620954 0.936996522 197087571 amyA Geobacter bemidjiensis Bem Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter bemidjiensis; 0.876846943 0.853857804 0.88634618 0.864050431 0.855428802 0.872884834 1.033147054 0.852841653 0.849596893 0.814666894 0.836225466 0.833329646 0.864830812 0.855112534 0.857489466 0.882152955 0.866257529 387855060 b_lactamase Emticicia oligotrophica DSM 17448 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Emticicia;species:Emticicia oligotrophica; 0.865128086 0.889963661 0.918478162 0.919865506 0.931560692 0.915928513 0.933224423 0.902603225 0.773733322 0.91231842 0.885944821 0.880920583 0.86959703 0.814572764 0.836428156 0.83633616 0.868382456 0.887714242 374655659 bphd Saccharomonospora marina XMU15 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora marina; 0.932373567 0.851761289 0.922709592 0.998737017 0.910750429 0.942747963 0.912135762 0.887034538 0.964546422 0.917988728 0.937638348 0.972317371 0.900675264 0.923431539 0.912184352 0.863668921 0.932514223 0.921656957 119961669 nirb Arthrobacter aurescens TC1 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter aurescens; 0.896912759 0.945257745 0.886087737 0.867214963 1.01865071 0.965159706 0.870020985 0.859894153 0.896712122 0.894899022 0.847863884 0.85095825 0.838123113 0.85690204 0.824404181 0.803599493 0.876602868 0.922148955 56479032 narg Azoarcus sp. EbN1 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 1.088811898 1.023324153 1.050824293 1.085006693 1.073824987 1.025306414 0.988184935 1.040216828 1.061841167 1.036759248 1.002098298 1.056049337 0.994584103 0.968293505 0.93796533 1.022429799 1.055644916 1.050772963 385281205 bphF1 gamma proteobacterium BDW918 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 0.794261494 0.918674933 0.878408016 0.826816856 0.880910604 0.847471883 0.850975579 0.797054908 0.834056266 0.883306163 0.840869304 0.84166476 333023696 amyA Streptomyces sp. Tu6071 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 1.245953183 1.212348923 1.261970104 1.192188011 1.212924794 1.301449748 1.181499123 1.215080756 1.190471295 1.206807358 1.204452715 1.218841187 1.197398498 1.240062058 1.296946654 1.269600243 1.30707284 1.248219571 77463858 nifh Rhodobacter sphaeroides 2.4.1 Nitrogen Nitrogen fixation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 0.802984315 0.754468182 323365180 nifh uncultured microorganism Nitrogen Nitrogen fixation NA 1.008871988 1.024048613 1.038786466 1.045914553 1.030032952 1.057621754 1.005281178 1.023431347 1.017328152 1.01794468 0.977558137 1.013081293 0.969243374 0.98989687 1.001784778 0.990357126 1.035424992 1.039980895 345136572 ppx Sphingobium sp. SYK-6 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium; 0.830148674 0.83880469 0.840747767 0.818938641 0.856797999 0.868641897 0.861785699 0.837430283 0.80303864 0.846668896 0.81313097 0.860387567 0.804897007 0.822174841 0.868150826 0.874921288 374291887 ppk Azospirillum lipoferum 4B Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum lipoferum; 1.033804956 1.024535154 1.000870681 1.017042275 1.008205867 1.014685327 0.950597076 1.009940173 1.014846531 1.009055584 0.973470718 0.990204377 0.978474998 0.948353755 0.887874462 0.973670211 1.01248046 1.0186843 373564657 Sir Methylobacterium extorquens DSM 13060 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium extorquens; 0.855641478 0.838927942 0.7766543 0.81933136 0.828315615 0.871722384 0.838174523 0.804951868 0.837976917 0.87864594 333024311 amyA Streptomyces sp. Tu6071 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 1.208306962 1.167831281 1.125334823 1.102409208 1.123082248 1.134286746 1.16469332 1.09737362 1.146264328 1.165549095 1.126605258 1.124021393 1.078906071 1.105556534 1.052573243 1.104016412 1.149568323 1.160332234 345508635 RgaE Bacteroides sp. D1 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides; 0.763362723 0.803209861 0.805210437 0.824560655 0.786209582 0.827468607 6681676 endochitinase Streptomyces thermoviolaceus Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 1.013554155 1.022845734 0.962331152 1.021218929 0.963775092 1.021456383 0.925607122 0.931623926 0.969395745 0.999279208 0.952604397 0.968124959 0.973109863 0.959542792 0.934660062 0.961406733 1.021088507 0.983011845 78184405 TIM Synechococcus sp. CC9902 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 0.95474743 0.922707037 0.842090857 0.926145678 0.854474158 0.869984146 0.894036784 1.02130816 0.988169064 0.882883711 0.870916274 0.88300272 0.909174957 0.946073972 87281207 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.873229454 0.871729961 0.861241842 0.856418154 0.847407061 0.885000017 0.823711663 0.841353528 0.873370004 0.911596641 0.801358708 0.853807953 0.824278807 0.84141768 0.915642644 0.813323619 0.898687206 0.93584434 308226090 amyA Oscillochloris trichoides DG6 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Oscillochloridaceae;genus:Oscillochloris;species:Oscillochloris trichoides; 1.045358874 1.033845435 1.053317039 1.075545622 1.079449082 1.052581261 1.049980957 1.037799606 1.027910279 1.038533039 1.072370348 1.046321072 1.137427595 1.000698692 1.0347846 1.030121727 1.044630422 1.019089958 145238310 tfth Aspergillus niger Organic Remediation Aromatics Chlorinated aromatics superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 1.23120652 1.226136809 1.170440035 1.224311311 1.208298461 1.268178673 1.22302453 1.222241342 1.190140565 1.202367483 1.206646298 1.209666912 1.182245368 1.186533022 1.182167462 1.200632464 1.218618952 1.192467232 255920267 mannanase Actinosynnema mirum DSM 43827 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Actinosynnema;species:Actinosynnema mirum; 0.872211219 0.899248472 0.861140215 0.888757232 0.858253629 0.865443559 0.8683703 0.842393024 0.865194209 0.884822272 0.879118312 0.848339371 0.81224733 0.860099557 0.829528203 0.853559853 0.868532806 0.888868587 82618393 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.968659838 0.933228009 0.989335886 1.002915555 0.959476331 0.96797031 0.974539478 1.009981454 0.996898777 0.969555767 0.953548147 0.977046252 0.911820974 0.943874069 0.930567499 0.943197289 0.961912751 0.961648222 295314228 assa uncultured delta proteobacterium Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 0.804196723 0.808265817 0.775709276 0.805283083 0.813577948 0.783669956 126013262 mcra uncultured archaeon Carbon Cycling Methane Methanogenesis superkingdom:Archaea; 0.778846952 0.862650926 0.873081111 0.806636127 0.869764276 0.83308967 0.837080387 0.814276212 0.833765163 0.851603198 0.853086311 295978699 B_lactamase_A Gluconacetobacter hansenii ATCC 23769 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter hansenii; 0.777418248 0.838423458 0.809751494 0.793755951 0.828034895 0.790374579 0.822836039 0.779475592 0.839754121 29606233 endochitinase Streptomyces avermitilis MA-4680 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 1.006566568 0.975261044 0.907859134 0.960088509 0.933731218 0.983670333 0.886404223 0.899116645 0.965760059 0.91244112 0.900686938 0.923913796 0.934482529 0.931422579 0.830305689 0.885714628 0.986428603 0.996992652 160917443 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.052369507 0.98873205 0.978335891 1.07006823 0.982968081 0.987010786 0.99827253 1.003779765 0.999881385 0.959109152 0.965482674 1.004089581 0.987454344 0.939778028 0.959907651 1.001273043 1.032221913 0.975380713 11967662 nasa Amycolatopsis mediterranei Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 1.10189453 1.088317044 1.039397696 1.033779435 1.052587973 1.044667922 1.038244632 1.021482241 1.080426174 1.03369075 1.037230588 1.03899618 1.067393571 0.996140922 1.036168104 0.993229128 1.004559294 1.022447541 260423538 linc Citreicella sp. SE45 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Citreicella; 0.813234268 0.769957052 399909705 poba Halomonas sp. KM-1 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas; 0.933357895 0.86427138 0.868144899 0.875148881 0.90709565 0.881504058 0.90956667 0.907585192 0.848144978 0.819079828 0.902224837 0.906825529 0.81741054 0.847947892 0.802682402 0.860676158 0.919640535 27352384 ppk Bradyrhizobium japonicum USDA 110 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium diazoefficiens; 0.771379726 0.825837764 121495608 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.482680881 1.447628984 1.457541262 1.455908885 1.467824837 1.4926609 1.466762302 1.443388589 1.431602383 1.454739004 1.461684556 1.452579243 1.434447942 1.423001729 1.466990679 1.43673527 1.448080242 1.443947718 260423708 GAPDH_Calvin Citreicella sp. SE45 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Citreicella; 1.174538384 1.136880431 1.158324495 1.135571222 1.132462485 1.154944817 1.117435415 1.118963439 1.140585981 1.143985571 1.125833325 1.143527393 1.111339973 1.110279269 1.076598065 1.064506584 1.166498197 1.135754216 219741506 FBPase Sinorhizobium meliloti Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium; 0.890314102 0.940143186 0.920671226 0.91042404 0.891326621 0.931683521 0.915870942 0.905559186 0.92414895 0.941374268 0.915352286 0.916899094 0.890685151 0.910108627 0.89612373 0.880708714 0.935598952 0.912701785 33320475 dsrB Desulfotignum balticum Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfotignum; 1.264496563 1.260706809 1.21556103 1.245645255 1.222912179 1.244906039 1.195394148 1.236195588 1.237571102 1.200122137 1.220202978 1.224412259 1.198039874 1.188367744 1.210730429 1.202383365 1.250990879 1.217290197 91795546 proO Chromohalobacter salexigens DSM 3043 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Chromohalobacter;species:Chromohalobacter salexigens; 1.058906787 1.053411974 1.043092794 1.059490406 1.01509446 1.084678998 1.019525841 1.095676503 1.030578611 1.047527715 1.017402827 1.033716618 1.00296676 1.039355722 1.032642052 1.026568954 1.024783838 1.043782314 78093528 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.914757737 0.979999062 0.905873333 0.964901271 0.942503666 0.943240765 0.922032827 0.910189303 0.922020485 0.913270967 0.91032778 0.964539823 0.924630827 0.8841841 0.901797326 0.918091953 0.929214756 0.890452334 326385387 cysJ Novosphingobium nitrogenifigens DSM 19370 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium nitrogenifigens; 0.883526249 0.87069853 0.858149062 0.863497572 0.891586898 0.899349856 0.860580223 0.802839523 0.834651644 0.829541476 0.833427823 0.865338147 0.868058997 0.795433706 0.858570053 0.869934309 371544272 acetylglucosaminidase Streptomyces coelicoflavus ZG0656 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicoflavus; 1.212749077 1.240908901 1.28020263 1.17987703 1.215069019 1.260033042 1.1609532 1.21145938 1.170674622 1.191160223 1.165548266 1.156747529 1.184378622 1.179908495 1.153209509 1.212922504 1.233495186 1.19853275 381358852 sqr Bradyrhizobium sp. S23321 Sulfur Sulfide Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.792273449 0.894325262 0.824533976 0.805332984 0.840091729 0.82771669 0.874878453 0.830320948 0.828351652 0.846600176 0.849838743 0.91022777 188989567 RgaE Xanthomonas campestris pv. campestris str. B100 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas campestris; 0.994143222 1.011395394 0.982755114 0.958043994 0.95153793 0.957028469 0.931855045 0.919833539 0.955874628 0.93472697 0.97954632 0.908880075 0.919748246 0.91534595 0.873982477 0.948467011 1.015085218 0.972041678 261353897 alpha_galactosidase_fungi Verticillium albo-atrum VaMs.102 Carbon Cycling Carbon degradation Other superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticillium;species:Verticillium alfalfae; 0.948144935 0.964847033 0.935298457 0.951567965 0.971865015 0.981957433 0.949450789 0.916757108 0.946908578 0.9381689 0.938675259 0.938924028 0.93657217 0.938328766 0.969871016 0.967283045 0.956533499 0.961696609 145254245 phospholipase_B_fungi Aspergillus niger virulence degradation NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 1.088034376 1.055307179 1.037276877 1.048502097 1.056320915 1.051783463 1.070496687 1.080505677 1.047655604 1.038749433 1.060449447 1.020776357 1.02017089 1.001747122 0.989879719 0.993484941 1.053226173 1.0452627 159027867 pgk Microcystis aeruginosa PCC 7806 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Microcystis;species:Microcystis aeruginosa; 0.870258977 0.858154336 0.894451677 0.837094695 0.912064297 0.84821394 0.891930004 0.886809332 0.840134009 0.87987716 1.092501931 0.83531351 0.846199514 0.843989682 0.829358473 0.828841486 0.906629545 0.955354346 395771907 poba Streptomyces acidiscabies 84-104 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces acidiscabies; 1.18084036 1.146899187 1.125986515 1.128114362 1.185140822 1.154277102 1.121306444 1.127351118 1.141861547 1.153391214 1.134318049 1.129593771 1.077874513 1.097437479 1.088511553 1.115383572 1.129881842 1.137280881 161163768 endoglucanase Sorangium cellulosum 'So ce 56' Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 0.890915018 0.857117632 0.859486915 0.886789344 0.822630862 0.851099438 0.838317937 0.83542007 0.894422712 0.883924914 0.850792172 0.891848191 0.83398029 0.867533205 0.852482188 0.837372644 0.905178139 0.851128088 299800818 assa uncultured prokaryote Organic Remediation Other Hydrocarbons NA 1.085014424 1.079137332 1.031721462 1.066044954 1.016864009 1.073260376 1.003638324 1.041457746 1.082163866 1.070674427 1.033966828 1.02660477 1.002457704 1.046298213 0.995993156 1.019366464 1.104776151 1.084696233 116222625 ccmL Candidatus Solibacter usitatus Ellin6076 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 0.954427391 0.884820437 1.0361562 0.944285624 0.889722918 0.880876714 0.907303588 0.969883553 0.89784927 0.936946119 0.941736931 0.920614863 0.856277871 0.836219874 0.812767085 0.835341829 0.92273535 0.864175402 2668406 cox1_Viridiplantae Hydrodictyon reticulatum Other Phylogenetic NA superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Chlorophyceae;order:Sphaeropleales;family:Hydrodictyaceae;genus:Hydrodictyon; 0.816183244 0.84473917 0.837383832 0.864918127 0.820824922 0.817176827 0.846866976 0.794757766 0.822831634 0.802097841 0.819523721 294970976 fthfs Brevibacterium mcbrellneri ATCC 49030 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Brevibacteriaceae;genus:Brevibacterium;species:Brevibacterium mcbrellneri; 0.889156515 0.937463477 0.875532266 0.915537862 0.904883763 0.915362869 0.890710066 0.862707677 0.884860346 0.91994584 0.866229242 0.916093837 0.89814925 0.896950655 0.909326189 0.899912051 0.945712952 193072763 mult_ring_12DiOx Streptomyces bingchengensis Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 0.912478533 0.929778172 0.969158473 0.968092764 0.940234407 0.922989193 0.945978213 0.956284817 0.965364352 0.941063418 0.900663911 0.912418134 0.902293986 0.867483919 0.857675369 0.879853807 0.939341457 0.948852759 116623484 xylanase Solibacter usitatus Ellin6076 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 1.164348187 1.142023239 1.14307461 1.143815847 1.110150831 1.13491715 1.112001986 1.108825272 1.131608658 1.104960244 1.128544854 1.11259987 1.100243453 1.083924439 1.092252831 1.099297584 1.166069146 1.131379683 256389689 endoglucanase Catenulispora acidiphila DSM 44928 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 1.317032671 1.301247967 1.279005571 1.287153616 1.280361892 1.305334613 1.261918969 1.268076212 1.275365704 1.274284604 1.261015943 1.275372923 1.259625608 1.263076668 1.243602612 1.271791378 1.291124276 1.294086269 151563605 nbac Ochrobactrum anthropi ATCC 49188 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum anthropi; 0.846378098 0.867465689 0.901362733 0.956645137 0.862660468 0.845437668 0.830499224 0.866486059 0.817521852 0.825691192 0.803188564 0.839585218 0.857006142 0.846536306 209504355 proO Burkholderia sp. H160 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 1.038877287 1.046829161 0.994160212 1.039720382 0.974815349 1.040959941 0.989155123 1.002002655 1.024543385 0.997572205 0.981480173 0.990709295 0.947817121 0.91845245 0.911948694 0.928265901 1.035251731 0.994144513 95110170 amyA Pseudomonas entomophila L48 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas entomophila; 0.95654744 0.936481629 1.006355265 0.936805822 0.834485187 0.903298769 0.84302512 0.911938921 0.948588847 0.912660469 0.874635272 0.891024857 0.856011527 0.882333066 0.844843858 0.86229216 0.95888412 0.956649966 332181573 amyA Treponema brennaborense DSM 12168 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema brennaborense; 0.82773715 0.799531486 0.814049976 0.795117732 0.809091914 0.833785103 124260305 arsc Methylibium petroleiphilum PM1 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 1.062355972 0.991825891 1.024053288 1.051410491 1.046904479 1.082470478 1.053044468 1.060751451 1.072403228 1.049094046 1.049608608 1.076286996 0.984797404 0.958882709 0.990481134 1.00352861 1.096915806 1.026265487 94424683 ara Sphingomonas sp. SKA58 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 0.772133319 0.816591219 0.81709613 0.823117358 0.7867708 0.821089425 299740557 exopolygalacturonase_fungi Coprinopsis cinerea okayama7#130 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 0.767423958 0.87023538 0.809552619 0.897173127 0.855366126 0.840153656 0.832286875 0.821100631 0.820034359 0.874120809 0.829875743 0.812362569 0.845479732 0.822080206 349701600 tktA Gluconacetobacter europaeus LMG 18494 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter europaeus; 0.856717851 0.811239889 0.823554547 0.849469655 0.866938814 0.844678493 0.855435636 0.867747174 0.901482046 0.841176914 0.824798089 0.868322418 0.800820379 0.838847135 0.839370834 0.87815651 375090191 ppx Facklamia languida CCUG 37842 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Aerococcaceae;genus:Facklamia;species:Facklamia languida; 0.924620444 0.908173353 0.889781188 0.941935326 0.894246421 0.863684447 0.888249057 0.904711343 0.943368374 0.881697842 0.893791023 0.908911267 0.853288063 0.837826057 0.833678248 0.837272796 0.920114766 0.929985802 386385025 chitinase Streptomyces tsukubaensis NRRL18488 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces tsukubaensis; 1.093613856 1.069857187 1.086174145 1.087335295 0.960820689 1.037471281 0.984367476 1.031294885 1.077764387 1.022903015 1.041958212 0.98803696 0.955738149 1.009253109 0.944763284 1.006691436 1.075959081 1.061537617 399539105 mhpa Amycolatopsis mediterranei S699 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 1.159421573 1.12176447 1.15706612 1.154032305 1.095648943 1.137605744 1.071074183 1.122309987 1.133911415 1.107600266 1.11660553 1.137940766 1.098585452 1.09318718 1.087689675 1.136749111 1.145213292 1.099480897 189336264 mer Burkholderia multivorans ATCC 17616 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 0.907415165 0.888154925 0.876069433 0.850766421 0.87019555 0.926456573 0.876392196 0.879286553 0.90962971 0.883762196 0.875042454 0.869149619 0.850918774 0.865000626 0.806281112 0.841461335 0.879749821 0.926491958 192764388 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.257764168 1.205151623 1.171701525 1.217606973 1.17034979 1.255786319 1.186576507 1.185958504 1.206233935 1.213200059 1.192298427 1.169185071 1.164409752 1.164602176 1.093022567 1.171885636 1.241127119 1.231965029 329297878 ppx Plautia stali symbiont Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae; 1.313605408 1.277866235 1.271729646 1.301961641 1.251958602 1.290973903 1.262362652 1.306134836 1.284472645 1.248741692 1.257984426 1.283456721 1.257721814 1.256527202 1.26262742 1.27941291 1.295809357 1.256981569 307726447 pcag Burkholderia sp. CCGE1003 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 1.079971606 1.108197922 1.078974029 1.073925536 1.095220933 1.106749936 1.073532079 1.079129201 1.059335124 1.086585585 1.061834869 1.062545612 1.067873651 1.022639173 1.039699283 1.062644794 1.089816843 1.116745215 209401896 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.0319174 1.031654419 1.05692998 1.041623161 1.057804197 1.01886759 1.095475256 1.040774197 1.072668296 1.045637204 1.068728185 1.05472983 0.996690368 0.985756312 0.979078801 1.001007385 1.081690874 1.082014765 161391954 dmsa Roseobacter litoralis Och 149 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter litoralis; 1.162381465 1.157130892 1.128246904 1.172659779 1.228494166 1.155257844 1.129291277 1.128609704 1.19197835 1.178100906 1.15416514 1.180111895 1.111847298 1.107001507 1.08544573 1.152555509 1.164870373 1.14321069 27367303 amyA Vibrio vulnificus CMCP6 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio vulnificus; 0.959073805 0.887167076 0.974007441 0.92588521 0.909652619 0.867275737 0.8871025 0.916915074 0.996503272 0.903811455 0.878079341 0.916475515 0.873996367 0.818565584 0.841684406 0.891246243 0.892977402 0.933505817 359316171 bphc Gordonia polyisoprenivorans NBRC 16320 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia polyisoprenivorans; 0.923588311 0.915965859 0.923746287 0.951655888 0.9616586 1.081787063 0.944768209 0.940002779 0.916686208 0.961532806 0.93861325 0.955070448 0.90748124 0.868493522 0.877316208 0.900788831 0.947367452 0.918313465 206576922 nasa Klebsiella pneumoniae 342 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 1.107657255 1.090323918 1.106799057 1.110094066 1.098257916 1.117614356 1.113811522 1.123648619 1.09659399 1.103415199 1.083979659 1.090790621 1.082378482 1.062260426 1.037817612 1.073001143 1.098532736 1.107409614 359313116 nirb Gordonia polyisoprenivorans NBRC 16320 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia polyisoprenivorans; 1.009144353 0.965467832 0.968633224 1.008901018 0.89044954 0.988946165 0.961463148 0.97193544 0.958025328 0.962278129 0.895269585 0.96517121 0.903507164 0.924322519 0.892965343 0.914601781 0.987065636 0.947291063 296426237 phenol_oxidase uncultured bacterium Carbon Cycling Carbon degradation Lignin superkingdom:Bacteria; 1.065564458 1.056432343 1.010291369 1.022502538 1.021417666 1.067129013 0.996619838 1.019890314 1.005524047 1.011579064 1.007537987 1.021228577 1.008481966 1.003933978 1.002212751 1.012262077 1.048501354 1.050452379 329849762 endoglucanase Asticcacaulis biprosthecum C19 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis biprosthecium; 1.045125124 1.02027705 1.05143854 1.075733067 0.99222206 1.027053324 0.97657781 1.002229832 1.040348297 0.988452344 1.00574679 1.031888029 1.015968883 1.00292226 0.941746429 0.998180908 1.044014634 0.999850469 315645849 pula Paenibacillus vortex V453 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus vortex; 1.33840334 1.309950282 1.293504281 1.369190441 1.353096202 1.31512621 1.312539272 1.331328946 1.343156777 1.283226229 1.294180171 1.394882123 1.294808778 1.262087354 1.242892875 1.322632046 1.350182302 1.277827577 110589246 AcnA Endoriftia persephone 'Hot96_1+Hot96_2' Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Endoriftia;species:Endoriftia persephone; 1.019166932 1.025364043 1.067477054 1.022538408 1.037986211 1.088061782 1.023534734 1.021095301 0.994113874 1.055711763 1.024859978 1.015240026 0.979870701 1.020128599 1.055498503 1.000511427 1.027004928 1.040935049 146188553 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.845958446 0.836837743 0.877049284 0.840470901 0.880582673 0.856276349 0.891231058 0.900662045 0.849451766 0.871459115 0.821498505 0.840929034 0.828429589 0.8712295 336321652 ara Cellvibrio] gilvus ATCC 13127 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas;species:[Cellvibrio] gilvus; 1.225016982 1.159005119 1.202400792 1.208229121 1.1481714 1.181070438 1.153776932 1.200711187 1.187201112 1.174067506 1.170681557 1.208006694 1.138278916 1.155368579 1.144042347 1.174026375 1.214824839 1.173744714 389866118 amyA Modestobacter marinus Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Geodermatophilaceae;genus:Modestobacter; 1.274791016 1.261475703 1.215862732 1.226000075 1.225879964 1.267411794 1.206093993 1.223620077 1.205119084 1.201742056 1.215696231 1.223207431 1.200610248 1.217361151 1.200108738 1.235816668 1.248251322 1.215264429 239831577 ppx Ochrobactrum intermedium LMG 3301 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum intermedium; 0.972758852 0.910584985 0.916465974 0.894401109 0.879176075 0.958824516 0.861209282 0.858804811 0.931601291 0.941516374 0.913704406 0.908018545 0.864348524 0.928663718 0.906804626 0.91871884 0.962275912 0.925680907 148557084 mult_ring_12DiOx Sphingomonas wittichii RW1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 1.065225328 1.044554738 0.979410235 1.046045034 1.069446335 1.08114207 1.019141893 0.910100828 0.911091166 1.069610071 0.881112653 0.993044205 0.994564165 1.054673856 0.895290095 0.923327436 1.020494732 1.035871992 156072052 ppk uncultured bacterium Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria; 0.906710091 0.962974977 0.930883852 0.978008325 0.953828616 0.980941753 0.932053623 0.907786819 0.935380205 0.964620927 0.974259769 0.966048922 0.970773499 0.957532381 0.887697819 0.964452094 0.951923809 0.945927752 373875430 Sir Leptonema illini DSM 21528 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Leptospiraceae;genus:Leptonema;species:Leptonema illini; 0.948204791 0.825850273 0.926780277 0.85276673 0.885121027 0.915550713 0.887783452 189345315 dsrB Desulfovibrio africanus Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 1.499320302 1.42229638 1.405619581 1.439457392 1.401095096 1.424369223 1.385562793 1.417410607 1.435685507 1.383810318 1.390974339 1.405609823 1.380128356 1.360992315 1.35664744 1.394353409 1.464738966 1.408903554 363805672 catechol_b uncultured bacterium Organic Remediation Aromatics Other aromatics superkingdom:Bacteria; 0.771505717 0.839249358 0.814389158 0.797060377 0.844819176 0.780830221 188533207 arsc Erwinia tasmaniensis Et1/99 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia tasmaniensis; 0.85153533 0.784629652 0.839089763 0.857392861 0.818305646 0.773193797 192359000 cysI Cellvibrio japonicus Ueda107 Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio;species:Cellvibrio japonicus; 0.772097316 0.933879924 0.803269435 0.861514496 0.907396619 0.825838102 184185914 EF1a_Stramenopiles Ditylum brightwellii Other Phylogenetic NA superkingdom:Eukaryota;phylum:Bacillariophyta;class:Mediophyceae;order:Lithodesmiales;family:Lithodesmiaceae;genus:Ditylum; 1.102386869 1.096984268 1.079778686 1.083654406 1.05496305 1.084368422 1.064431335 1.077604858 1.095682769 1.053104774 1.081357603 1.078536364 1.041098474 1.034694178 1.033058112 1.033643379 1.089658322 1.083933234 54022723 amie Nocardia farcinica IFM 10152 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 1.162228176 1.143474878 1.18014677 1.154564015 1.157820334 1.196866927 1.169286308 1.159304846 1.122671497 1.138365483 1.134845773 1.178482778 1.129811169 1.114065822 1.142849769 1.139216068 1.169610206 1.171629185 115525110 phn Rhodopseudomonas palustris BisA53 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 1.132504723 1.097004849 1.118800458 1.14665059 1.117482654 1.137774948 1.142973281 1.15093123 1.118956066 1.114526272 1.105468338 1.131230553 1.086143654 1.07793366 1.078062232 1.119959714 1.122034684 1.119516349 299767072 axe uncultured fungus Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi; 1.119939376 1.11791375 1.019556128 1.071785528 1.029484188 1.065427228 0.998158487 1.026075353 1.087992795 1.046963748 1.045263813 1.051483365 1.016191839 1.039488515 1.012898778 1.063205045 1.107119651 1.074520106 334880867 badh Lactobacillus pentosus MP-10 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus pentosus; 0.97289191 0.76996677 0.812572058 0.819890875 0.797238248 0.794434726 0.78658567 410133570 one_ring_12diox Glaciecola agarilytica NO2 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Glaciecola;species:Glaciecola agarilytica; 0.78002776 0.786902012 0.829448559 0.876871653 0.800842873 0.899794289 0.84849215 0.888309989 0.848649089 0.81573437 0.79469932 0.826251114 0.854646209 0.818007806 0.872290387 0.865307138 90337173 B_lactamase_A Aurantimonas manganoxydans SI85-9A1 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Aurantimonas;species:Aurantimonas manganoxydans; 1.087978977 1.016423078 0.963606282 0.967739595 0.977018439 1.054426088 0.927197509 1.022589945 0.987886443 1.005683904 1.10511483 0.994940843 0.955014718 0.916198589 0.888970223 0.97724848 0.922378954 0.992545973 297163098 catechol Streptomyces bingchenggensis BCW-1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces bingchenggensis; 0.98931908 0.973934309 0.948960716 1.049680642 0.958653937 1.02079214 0.95121281 0.959711731 0.955801186 1.034975325 0.980949874 0.974036141 0.952456756 1.007135364 0.951686341 0.943784677 0.994489863 0.987002879 163785678 ppx Hydrogenivirga sp. 128-5-R1-1 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Aquificaceae;genus:Hydrogenivirga; 0.817896301 0.829386985 0.821404894 0.859077004 0.873132992 0.82363911 0.889886496 0.828985424 0.812932158 0.848563729 0.833574293 0.874676511 0.844649667 0.809024072 0.830549626 0.810744048 0.817411765 375103512 tktA Burkholderiales bacterium JOSHI_001 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales; 1.116105072 1.112274103 1.114764829 1.097057967 1.113971633 1.070378296 1.122821108 1.059525001 1.107717046 1.09085993 1.090120362 1.075342373 1.07839396 1.055077406 1.014023161 1.031795352 1.07622567 1.101652732 209401814 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.878303607 0.890982099 0.829013353 0.86673802 0.824365713 0.91466694 0.835596572 0.846693033 0.850757426 0.883704317 0.842674748 0.913989701 0.88082366 0.896638296 0.899189922 330413222 amyA Lachnospiraceae oral taxon 107 str. F0167 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;species:Lachnospiraceae oral taxon 107; 0.876146921 0.859137723 0.841578225 0.897510777 0.874298366 0.845827627 0.864977611 0.9070215 0.900483549 0.863164707 0.867570853 0.877197693 0.89159002 0.884324688 0.914388465 0.872975953 0.871666153 300106298 Sir Schizophyllum commune H4-8 Sulfur sulfite reduction NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 1.133042915 1.140370093 1.087459656 1.16307619 1.105947295 1.124944037 1.075412847 1.105312184 1.133735789 1.090065425 1.089327346 1.113862375 1.132774042 1.060972376 1.053282001 1.075752626 1.157001421 1.106159453 84517284 pgk Loktanella vestfoldensis SKA53 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Loktanella;species:Loktanella vestfoldensis; 1.087568359 1.025916033 1.061044228 1.07368715 1.060894039 1.051019923 1.066243826 1.103801484 1.05628534 1.031704207 1.04947288 1.065998615 1.013344036 1.004798459 0.98704352 1.017379914 1.082220592 1.018729913 12025424 Rubisco_Alveolata Amphidinium carterae Carbon Cycling Carbon fixation Calvin cycle superkingdom:Eukaryota;class:Dinophyceae;order:Gymnodiniales;family:Gymnodiniaceae;genus:Amphidinium; 0.818938451 0.804046587 0.831780551 0.799183491 0.853141849 0.816499961 0.82017338 0.855620026 29604818 ben_bcla Streptomyces avermitilis MA-4680 virulence NA NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 0.946082055 0.953814839 0.924466465 0.954125316 0.934447129 0.9696235 0.927730051 0.891865553 0.917624623 0.975029921 0.916806855 0.910962138 0.932160857 0.9712989 0.907040784 0.921947892 0.951930172 0.925633634 37925835 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 1.396265027 1.362241245 1.395253973 1.393434809 1.390591135 1.413018608 1.401480324 1.407781948 1.376499968 1.37856949 1.387563529 1.382203259 1.380900814 1.33803932 1.365882397 1.354102069 1.401575558 1.325335645 325180817 actin_Stramenopiles Albugo laibachii Nc14 Other Phylogenetic NA superkingdom:Eukaryota;order:Albuginales;family:Albuginaceae;genus:Albugo;species:Albugo laibachii; 0.7663686 0.814575042 0.806606848 0.788119204 0.77075201 0.855734284 40253092 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.829828432 0.869206263 0.84711365 0.832199189 0.858448707 0.861975308 0.856342831 0.806366142 0.814076822 0.804823113 0.78392673 0.818382355 0.869543414 209518280 tktA Burkholderia sp. H160 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 0.937942495 0.956224394 0.990546242 0.938664223 0.964295517 0.987269071 0.909780231 0.903708737 0.955862588 0.927884527 0.972333313 0.939313697 0.913258758 0.914748386 0.903584145 0.913302463 0.974718721 0.975647855 145217571 chnb Mycobacterium gilvum PYR-GCK Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 1.060293605 1.079923816 1.053683838 1.180696759 1.042364812 1.076660941 1.014060206 1.007681401 1.057789914 1.057011736 1.192529099 1.031153741 1.106364797 1.014374372 0.978127821 0.989282329 1.065335391 1.063395123 48544 rubisco Xanthobacter flavus Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter; 1.104336414 1.092982686 1.186759305 1.116541391 1.13392452 1.030779977 1.093124085 1.017161294 1.040903947 1.225201004 1.191660408 1.147813758 1.158199785 1.120623589 1.19983316 1.183754613 1.037972559 1.113198122 85775219 soxY Anaeromyxobacter dehalogenans 2CP-C Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter;species:Anaeromyxobacter dehalogenans; 1.07563735 1.113684628 1.064813414 1.112163513 1.066419058 1.094442015 1.057897954 1.038490092 1.065672623 1.045914158 1.05614277 1.055504352 1.052162813 1.048741247 1.03950594 1.030152849 1.10618938 1.072911179 302194672 xylanase Brevundimonas subvibrioides ATCC 15264 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Brevundimonas;species:Brevundimonas subvibrioides; 0.827708022 0.842469464 0.813197245 0.884226223 0.870488318 0.830151957 0.837100202 0.878970154 0.838805223 0.807203609 0.882844943 0.835482718 0.828153625 0.794310396 0.829890712 24346052 fthfs Shewanella oneidensis MR-1 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella oneidensis; 0.835597138 0.864393848 0.838328349 0.820854845 0.832768152 0.841377193 0.849315932 0.855946159 0.844352562 56787881 cmci Novosphingobium resinovorum Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 1.155848498 1.119846259 1.145121718 1.129228711 1.098342794 1.12437249 1.101452442 1.111852292 1.129038617 1.128725176 1.11740996 1.125075116 1.113020993 1.1284244 1.103155939 1.134094632 1.146216929 1.132778437 290568549 dmdA Stackebrandtia nassauensis DSM 44728 Sulfur DMSP degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Glycomycetaceae;genus:Stackebrandtia;species:Stackebrandtia nassauensis; 1.08826328 1.133038948 1.0776335 1.08904187 1.073119391 1.126064441 1.084295998 1.097712426 1.121699332 1.105814728 1.063156952 1.094925969 1.034487629 1.073497295 1.013415026 1.053257586 1.074477997 1.080766933 33391471 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.135348645 1.153463511 1.086711069 1.105746789 1.172610849 1.140823236 1.151036375 1.101145155 1.123100359 1.15723322 1.103640117 1.118953439 1.136503197 1.147254766 1.074190297 1.114362124 1.122474677 1.119313756 73534006 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.975574471 0.961649364 0.939483232 0.998624307 0.988472494 0.976350512 0.980962498 0.96860908 0.981370369 1.008743219 0.995181504 1.0070367 0.949645659 0.972666809 0.875284859 0.960585148 0.958077733 0.953072264 83404780 nirs uncultured organism Nitrogen Denitrification NA 0.808072683 0.831207251 0.79234604 0.804182227 0.858564144 0.819247295 0.784846514 0.810495394 0.839721435 0.799466974 0.848864279 326631138 ara Chrysosporium lucknowense Carbon Cycling Carbon degradation Hemicellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;genus:Chrysosporium; 0.905459965 0.942512091 0.916398349 0.922095996 0.875552236 0.927838474 0.89050676 0.909890658 0.913460593 0.930701892 0.913761047 0.934066845 0.903448042 0.910829884 0.895095182 0.902314731 0.948286196 0.989905662 371770447 RgaE Prevotella dentalis DSM 3688 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella dentalis; 1.075224484 1.06086715 1.059777944 1.05093738 1.011053346 1.17322534 1.00492781 1.093036412 1.042822221 1.056540714 1.052887621 1.011808339 0.974834903 1.020978316 0.961375776 0.995904955 1.047993659 1.098226178 86566820 alkb Frankia sp. CcI3 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 0.86942074 0.905991736 0.934311548 0.936453303 0.978969923 0.969690313 0.983296311 0.967870624 0.938744422 0.932969335 0.954840727 0.919442743 0.855681507 0.87519254 0.871492101 0.860257057 0.958284856 0.971814972 260849382 amyA Mitsuokella multacida DSM 20544 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Mitsuokella;species:Mitsuokella multacida; 1.299652968 1.260182464 1.249805744 1.276110519 1.226265156 1.211483744 1.200367922 1.255297708 1.252803048 1.200200287 1.237436693 1.282469856 1.207073679 1.165953079 1.186442877 1.210590719 1.265711827 1.200487803 49072886 phta Mycobacterium vanbaalenii Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 1.583176131 1.538461436 1.531063115 1.526602144 1.494917778 1.558697574 1.507766309 1.523356463 1.536488843 1.518218024 1.504264236 1.518068743 1.471496239 1.49298439 1.457654581 1.509016052 1.555992827 1.517787426 365826933 amyA Actinomyces sp. oral taxon 849 str. F0330 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 849; 1.225295063 1.207136965 1.19686736 1.190587778 1.200894615 1.242360817 1.193008009 1.207735227 1.174760878 1.187283585 1.208587532 1.17742747 1.188449004 1.165995098 1.180450525 1.168341663 1.205267644 1.187248697 288922331 amyA Frankia sp. EUN1f Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 0.764138699 0.816093987 0.786672239 0.793986122 0.800244407 0.802151788 157285710 napa uncultured bacterium Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria; 1.056985684 1.080182496 0.977590177 1.084250969 0.998415663 1.041293746 1.003962322 1.073443357 1.050965135 1.01411151 1.003570006 1.052624576 1.012657004 0.958697444 0.973202226 1.014973007 1.052771961 1.030258245 358423151 pmoa NC10 bacterium enrichment culture clone 9 Carbon Cycling Methane Methane oxidation superkingdom:Bacteria; 0.919006284 0.931607998 0.915528925 0.980905322 0.869772068 0.941375033 0.862095251 0.996195477 0.955276393 0.940169657 0.905960155 0.886162492 0.863410615 0.900927773 0.877328877 0.888933306 0.952708656 0.949756689 182382456 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.875505653 0.931542129 0.810802446 0.852145134 0.849718942 0.897772132 0.825492392 0.831453375 0.841662721 0.888993354 0.876901354 0.806568462 0.843463851 0.850087165 0.84300255 0.873019455 340553605 xyla Collimonas fungivorans Ter331 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Collimonas;species:Collimonas fungivorans; 0.78833864 0.814437343 0.847849394 0.802645802 0.851311337 0.857371263 0.753922866 0.84324482 77378459 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.067234268 1.085166776 0.995106116 1.078353412 1.032762858 1.020221605 1.061696342 1.084334852 1.075999682 1.018363991 1.123442729 1.060629827 0.99513511 1.002378079 1.034592014 1.078029723 1.053459835 1.093716758 196229564 alginase Chthoniobacter flavus Ellin428 Carbon Cycling Carbon degradation Alginate superkingdom:Bacteria;phylum:Verrucomicrobia;class:Spartobacteria;genus:Chthoniobacter;species:Chthoniobacter flavus; 0.916479067 1.033554297 0.912828718 0.928132935 0.98680872 1.008418218 0.945974816 0.906098679 0.922564381 0.93960641 0.968009327 0.918627911 0.989220569 0.94117128 0.829838915 0.900536313 0.918955065 0.923205742 69933167 pcag Paracoccus denitrificans PD1222 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 0.989057811 0.989235407 0.983901505 0.973714851 0.943344354 0.96518369 0.921881282 0.945467121 0.949632553 0.945267378 0.945975623 0.981114053 0.92702639 0.899837547 0.862779506 0.907506525 0.965957085 1.003251393 373880811 alkb Nocardia sp. MS259f Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia; 0.972701351 0.94493277 0.963880206 0.975829573 0.959085933 0.960780505 0.966667516 0.978363165 0.973006649 0.961109428 0.917844591 0.917968712 0.909829221 0.913410122 0.902613241 0.915745636 0.974591673 0.96880561 398199128 fosa Pseudomonas sp. GM60 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.868041558 0.869321685 237882275 amyA Micromonospora sp. ATCC 39149 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Micromonospora; 1.038737325 1.060825562 1.051203873 1.069138807 1.009668867 1.058067027 0.947189436 1.210358454 1.008776794 1.001693647 1.006678026 1.013733215 0.997600733 0.997369839 0.93335027 0.998969092 1.068763184 1.09124121 380474299 cpnb Colletotrichum higginsianum Organic Remediation Other Hydrocarbons NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Glomerellaceae;genus:Colletotrichum; 1.040191327 1.106503851 1.010621196 1.013524125 1.008779122 1.059970971 0.985281092 0.982116769 1.013166892 1.046987562 1.006873608 1.017620885 1.011369185 1.036010192 0.97472185 0.986452208 1.022910491 1.063473349 398059583 vgb Burkholderia sp. BT03 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 1.166822621 1.158836935 1.157197596 1.151219071 1.120723498 1.155505845 1.105739198 1.150931948 1.131657009 1.138417581 1.139760204 1.148799253 1.108194119 1.125652803 1.127202383 1.140119626 1.132869256 1.136188854 292560787 aoxb uncultured bacterium Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 1.263208805 1.211511052 1.237281201 1.24867522 1.21133443 1.253752009 1.21769201 1.226822346 1.235182766 1.208360687 1.240829121 1.204872057 1.193086423 1.157712775 1.150273335 1.154998861 1.275164853 1.206366272 115401940 tannase_Cdeg Aspergillus terreus NIH2624 Carbon Cycling Carbon degradation Tannins superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 0.911018748 0.930212609 0.968869667 0.952146019 0.966714429 0.906304007 0.92180516 0.930005539 0.929023427 0.936190224 0.920946437 0.973137961 0.93370411 0.897249969 0.935463751 0.930670496 0.895851158 0.916774718 296532688 fthfs Roseomonas cervicalis ATCC 49957 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Roseomonas;species:Roseomonas cervicalis; 1.239656698 1.231565736 1.221839869 1.243050559 1.220354146 1.247869528 1.239667288 1.27729949 1.215544772 1.230218565 1.20229928 1.24073807 1.190514469 1.19092666 1.185794429 1.200235357 1.238981369 1.230501902 77378513 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.079341996 1.066289402 1.044668677 1.096233561 1.084672211 1.010653251 1.04621444 1.01327225 1.11005503 1.063349968 1.069423164 1.113118752 1.068016472 1.012501372 1.044724663 1.010190755 1.057990515 1.01333621 321161982 RgaE Granulicella tundricola Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Granulicella; 1.252403913 1.223827279 1.203028344 1.226154045 1.159309741 1.208258797 1.190095039 1.197638214 1.173883637 1.18333106 1.181724121 1.193700516 1.17402373 1.140701298 1.118409553 1.17205068 1.239984451 1.193267392 291197204 exoglucanase uncultured fungus Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi; 0.832556417 0.903365472 0.856961151 0.828851057 0.844989255 0.867889941 0.856666882 0.866736469 0.82385209 0.880503927 253982722 fccab Methylotenera mobilis JLW8 Sulfur Sulfide Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Methylophilales;family:Methylophilaceae;genus:Methylotenera;species:Methylotenera mobilis; 1.060110493 1.061129684 1.043062892 1.082242569 1.133118168 1.083734511 1.132296056 1.059937782 1.050941383 1.12873455 1.107471882 1.070066013 1.084526666 1.032369463 0.992866088 1.053825469 1.056999341 1.066711032 151302384 aps_apra Desulfotomaculum sp. DSM 8775 Sulfur adenylylsulfate reductase NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum; 1.127004571 1.090743695 1.066306076 1.118734201 1.067493127 1.056849911 1.055710081 1.074466879 1.096418351 1.062093434 1.055834891 1.098535099 1.035338609 1.023611433 1.024793718 1.045880532 1.119171413 1.072078135 297253666 cysI Geobacillus sp. C56-T3 Sulfur Other NA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 1.044452526 1.049092629 1.041867416 1.064841701 1.022681103 1.031206269 1.05852435 1.039825599 1.029310825 1.040989016 1.04608183 1.028757185 1.013902654 0.989062895 0.983330875 1.007799627 1.016651763 1.018423465 120593852 FBPase Polaromonas naphthalenivorans CJ2 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 1.454208201 1.435519193 1.428878654 1.442763948 1.424594994 1.42777999 1.423269986 1.454972065 1.439467638 1.416370336 1.419405964 1.438048288 1.402023157 1.380992413 1.392910031 1.399519907 1.437262709 1.402430975 260612807 cysJ Vibrio metschnikovii CIP 69.14 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio metschnikovii; 1.013109993 0.959790017 0.98396631 0.993663132 0.994814571 0.992562401 0.98690317 0.976552016 1.005547041 1.009919194 1.005028448 1.002288753 0.910967261 0.891622006 0.901497995 0.929106412 0.968712888 0.960261944 20501991 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.841995561 0.873868823 0.827282048 0.808072731 0.82156136 0.820850667 0.86835416 0.810332067 0.894168824 0.855331244 0.799961382 0.882513647 0.904421532 294338570 CsoS1_CcmK Thiomonas sp. 3As Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Thiomonas; 0.843657896 0.912234876 0.870746367 0.880211316 0.917244244 0.868193832 0.863129156 0.913714457 0.878036031 0.875405414 0.915557041 0.904701671 0.910702876 0.889729416 0.850454045 0.865787423 0.916739594 83972372 nosz uncultured alpha proteobacterium Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 0.797820963 0.821530283 29652552 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.098865759 1.084541202 1.05849096 1.048293188 1.079110898 1.071141376 0.944160496 0.992276694 1.06571665 1.030447142 1.049806013 1.066849156 1.029005311 1.033984512 0.982095765 1.040214313 1.094310469 1.050426204 377569809 scnabc Gordonia terrae NBRC 100016 Organic Remediation Others NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia terrae; 1.033721018 1.016305948 1.002981449 1.013852053 1.004525774 1.034732093 1.018894445 1.009231204 1.031036329 0.996427569 1.012521172 1.015037635 1.020440538 1.007324897 0.999950422 1.015054486 1.031055554 1.003547722 378404675 rubisco Rhodospirillum photometricum DSM 122 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum photometricum; 1.206362435 1.195066349 1.152948271 1.177100409 1.195759945 1.18635655 1.163739263 1.195996643 1.172479677 1.153245421 1.109438716 1.160136462 1.143915383 1.125616433 1.123374059 1.156579493 1.184559998 1.218650732 119371704 narg Castellaniella defragrans Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Castellaniella; 1.024740794 1.037370023 1.00779815 1.033154969 1.027829503 1.014537583 1.019232958 1.022134001 1.030163879 0.996593866 0.997327064 0.988824522 0.969009373 0.95270115 0.942374778 0.960367055 1.058188719 1.005452228 71915736 xyla Thermobifida fusca YX Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Thermobifida;species:Thermobifida fusca; 1.181604421 1.19737631 1.133643954 1.127512549 1.150758976 1.209272827 1.10652991 1.107612376 1.101374536 1.126240304 1.110466656 1.123199715 1.119598448 1.123823445 1.101354372 1.095532195 1.178850239 1.159613641 261353122 phospholipase_C_fungi Verticillium albo-atrum VaMs.102 Carbon Cycling Carbon degradation Phospholipids superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticilium;species:Verticillium albo-atrum; 0.760682924 0.813985061 0.76496119 0.784764688 148245203 endoglucanase Clavibacter michiganensis subsp. michiganensis NCPPB 382 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Clavibacter;species:Clavibacter michiganensis; 0.847591025 0.83340101 0.88344811 0.889105147 0.805443033 0.909468491 0.829550522 0.872276867 0.862532199 0.924276435 0.805048392 0.866216022 0.786290605 0.864078352 0.794177225 0.864352264 0.877085027 115397179 exoglucanase Aspergillus terreus NIH2624 Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 0.862885976 0.860018692 0.870638502 0.868701765 0.869490032 0.857071378 0.846534649 0.870928755 0.861551835 0.845170387 0.862783694 0.864396389 0.819509054 0.844000398 0.817127419 0.805609136 0.858402988 0.853721596 404259180 mult_ring_12DiOx Gordonia namibiensis NBRC 108229 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia namibiensis; 0.891063367 0.81940801 0.83902597 0.8821793 0.820717504 0.861593792 0.858399857 0.842127581 0.843725614 0.828892598 0.817628956 0.845957694 0.894719739 13346880 rgl Sorangium cellulosum Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium; 0.919846512 0.932716976 0.879597902 0.924258679 0.907543438 0.91684943 0.882506363 0.876640189 0.909981693 0.919890965 0.866635311 0.904269295 0.878446257 0.883904957 0.869164916 0.944499599 0.913675133 0.956045594 374655394 rubisco Saccharomonospora marina XMU15 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora marina; 1.018760759 1.012114377 1.018195006 0.994480937 1.005939882 1.033740019 0.988795265 0.957265128 1.037187447 1.110692383 1.027585807 1.046455851 0.956304392 0.971666568 0.950575837 0.999333712 1.002966959 1.027883114 317124481 amyA Intrasporangium calvum DSM 43043 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Intrasporangium;species:Intrasporangium calvum; 0.932575735 0.956492572 0.83744308 0.956998922 0.891731185 0.956833065 0.918809326 0.867559536 0.912245449 0.923790089 0.873066102 0.880165822 0.921265611 0.896799571 0.884542094 1.031733361 0.968868326 116048312 nifh uncultured soil bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.821480078 0.811161124 0.806962055 0.813625614 0.868980239 0.811247965 0.859134553 0.838135921 387967845 arsc Pseudomonas stutzeri TS44 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 0.921387045 1.003945383 0.905387003 1.04896983 1.012748335 0.954894847 0.968162011 0.918277069 0.966574036 0.914589231 0.971547017 0.974261115 0.963408972 0.907952082 0.941416346 0.94177663 0.940622916 0.933079699 391859946 catechol_b Hydrocarboniphaga effusa AP103 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Sinobacteraceae;genus:Hydrocarboniphaga;species:Hydrocarboniphaga effusa; 0.925955924 0.956700019 0.946957877 0.968689018 0.965154693 0.970561766 0.959651658 0.924007984 0.958847408 1.020067353 0.966467856 0.968367815 0.929829857 0.90435975 0.860108471 0.941175446 0.957211323 0.972768905 158331414 chitinase Azorhizobium caulinodans ORS 571 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Azorhizobium;species:Azorhizobium caulinodans; 1.217354486 1.116792651 1.116859682 1.125161166 1.136845388 1.123600142 1.121566443 1.134266322 1.112407188 1.092304175 1.114826786 1.11627784 1.065659437 1.031122224 1.051432363 1.050581519 1.131301152 1.144075024 224579026 rubisco uncultured bacterium Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria; 1.425104765 1.381029856 1.398915263 1.408126854 1.390613354 1.397053965 1.398968755 1.403542807 1.392915417 1.393258909 1.388876853 1.409595121 1.366797803 1.337474204 1.35362844 1.362122711 1.421864804 1.3630376 147886238 phenol_oxidase uncultured bacterium Carbon Cycling Carbon degradation Lignin superkingdom:Bacteria; 0.814004144 0.814500725 34483923 ppx Wolinella succinogenes Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Wolinella; 0.83069047 0.835244385 0.831531863 0.851440941 0.846621491 0.80708295 0.842649492 0.833714599 0.855260193 0.845865307 0.843474993 0.843823243 0.836875129 0.829220647 157912623 dmdA Dinoroseobacter shibae DFL 12 Sulfur DMSP degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 0.876183489 0.936658294 0.895570514 0.924700417 0.916610639 0.883549828 0.896817124 0.865789225 0.898701864 0.950462366 0.902084615 0.891385429 0.887927558 0.868594454 0.853541859 0.927809795 0.931564982 403066662 mdld Pseudomonas putida Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.934751214 0.89282125 0.913672516 0.937104268 0.915957062 1.037944185 0.955561716 0.836464192 0.897240956 0.980559859 1.013824074 0.929027301 0.954316684 1.033309393 0.96131527 0.911902344 0.952931174 0.919372837 319414045 phenol_oxidase uncultured bacterium Carbon Cycling Carbon degradation Lignin superkingdom:Bacteria; 1.024447069 0.996576322 1.010755494 1.035245073 1.028265604 1.046014128 0.995278717 1.027443246 1.002342657 1.016826556 1.020640715 1.012156079 0.995182486 0.990723573 0.98844633 0.971549785 1.004528815 0.998440626 73763118 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.031465353 0.932442541 0.980472828 1.019232684 1.081685484 0.944096145 1.043971707 0.960627523 1.051564914 0.955146988 0.990638275 1.05588403 0.958322537 0.948406544 0.95948337 0.976709188 0.993624654 0.924505765 56696787 dmdA Ruegeria pomeroyi DSS-3 Sulfur DMSP degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 1.229176745 1.206934398 1.206717982 1.196331353 1.201267339 1.208275254 1.201287848 1.210156327 1.201871827 1.18803796 1.142555019 1.184758033 1.176863546 1.140514986 1.144472279 1.161788031 1.208609504 1.187484863 184199401 nirk uncultured denitrifying bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.900835922 0.871418454 0.87144792 0.896854621 0.880246209 0.890435937 0.824466247 0.855538157 0.877350418 0.889309717 0.852163783 0.90986566 0.882294355 0.86167052 0.882420943 0.891708699 0.950937859 0.924391215 372284615 amyA Streptococcus macedonicus ACA-DC 198 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus macedonicus; 0.866556421 0.883241261 0.899112465 0.90226352 0.918993315 0.93868263 0.904605296 0.844965508 0.861082466 0.9197464 0.856686166 0.824921743 0.830828502 0.927881307 0.886606091 0.961444475 0.938556674 146340739 nira Bradyrhizobium sp. ORS 278 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.961845547 0.934717869 0.927060978 1.010665895 0.960618106 1.006170174 0.981100472 0.99632 0.918024639 0.943927381 0.929627923 0.93940595 0.929023763 0.953087012 1.119685212 0.921129616 1.060160341 1.001119707 38198157 catechol Rhodococcus erythropolis Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 1.042158796 0.98873699 0.982200451 1.032717185 0.997918378 0.996409719 1.032430296 1.00860992 1.020292205 0.985282282 0.977851158 1.036678192 0.950879824 0.960181587 1.016768 0.99319696 1.000064814 1.039889404 93454664 arra delta proteobacterium MLMS-1 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 0.820011802 0.800102616 0.816869981 0.800525908 0.809457019 0.815855714 0.794861032 0.852891868 0.785777575 0.837627442 213971300 phn Pseudomonas syringae pv. tomato T1 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 1.015397702 0.992637869 1.005539161 0.990703046 0.923915887 0.990220346 0.930846979 0.945423223 0.997625196 0.981096808 0.950321612 0.977784079 0.942229985 0.967177246 0.93015292 0.946851217 0.998422987 0.991008282 213926938 amie Pseudomonas syringae pv. tomato T1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 0.952801065 1.00291558 0.930555512 0.985972405 0.973832091 0.950372259 0.927924229 0.903113963 0.923271336 0.942717414 0.976571552 0.917237546 0.878262408 0.90147424 0.864286039 0.895418575 1.015108869 1.000505836 57998217 mdlc Pseudomonas putida Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.899497951 0.913761007 0.915673498 0.931536055 0.916895631 0.939984398 0.903262612 0.891722264 0.870569591 0.928954394 0.909083762 0.878099829 0.875169056 0.954712319 0.900902593 0.88806605 0.905193439 0.978894184 306528381 cueo Dickeya dadantii 3937 Metal Homeostasis Copper Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya dadantii; 1.208183086 1.156185958 1.148142665 1.153226084 1.17892792 1.185775818 1.19547325 1.127345481 1.15244259 1.190837064 1.168525786 1.131848371 1.160852555 1.144905549 1.164466889 1.177930116 1.165559464 1.189801846 164507720 amyA Streptomyces glaucescens Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 0.960463208 0.967542161 0.932087213 0.964129399 0.960413027 0.960939802 0.945120747 0.961368975 0.949721218 0.953538807 0.914004226 0.949358855 0.910098773 0.928207231 0.89529441 0.928422307 0.959158696 0.990165451 146339371 hbh Bradyrhizobium sp. ORS278 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.835834987 0.849623109 0.846127416 0.804572173 0.86202011 336299218 rgh Paenibacillus mucilaginosus KNP414 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 1.117675862 1.165886473 1.04843591 1.095544978 1.127622136 1.13929251 1.126047913 1.093551378 1.106714441 1.137267552 1.117119097 1.120515309 1.116062616 1.115647744 1.121365315 1.112731762 1.101464768 1.132765397 209486850 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.88319922 0.889778959 0.842563942 0.797360583 0.814837242 0.838099214 0.844566733 0.805517242 0.8487159 0.869017381 212009340 rubisco Thermococcus onnurineus NA1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Thermococcus;species:Thermococcus onnurineus; 0.821624827 0.808924842 197105153 ppk Phenylobacterium zucineum HLK1 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Phenylobacterium;species:Phenylobacterium zucineum; 0.875788394 0.880749019 0.844406379 0.840160702 0.787529862 0.826471286 0.896032579 0.893071405 0.844681063 0.88015964 0.814176033 0.81336661 0.851594739 0.851032981 197621282 rubisco uncultured bacterium Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria; 0.993409731 0.928397438 1.050340501 0.968906846 1.022832742 0.89677273 0.917457953 0.947910788 0.987207882 0.916613947 0.932989907 0.93607525 0.862820811 0.852928943 0.827267633 0.8431873 0.94618896 0.945556341 385767829 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.949787402 0.970791819 0.940850514 0.937434392 0.980901641 1.052222588 0.942486926 0.953882341 0.954489446 1.021594112 0.987368479 0.982414486 0.92178327 0.954854835 0.888063798 0.997881817 0.963699013 0.975667744 139002641 nifh uncultured nitrogen-fixing bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 1.026488088 1.017683262 1.018116307 1.04140393 1.010157897 1.031044111 0.995787879 1.037105613 1.031707745 1.000205563 0.976276209 1.040186172 0.968555548 0.949012814 0.950481878 0.998920556 1.025444346 0.99864671 116224961 xylanase Solibacter usitatus Ellin6076 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 0.890070303 0.90160228 0.911891139 0.911162808 0.934105208 0.916289494 0.893930797 0.883272539 0.893264684 0.895011573 0.893275063 0.888531067 0.888286201 0.905931491 0.863101454 0.858249308 0.887667993 0.920465716 183219094 terc Bifidobacterium animalis subsp. lactis HN019 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium animalis; 1.065676521 0.959307056 0.957888652 1.068953054 0.990247611 0.966281246 1.022224046 1.056503098 1.048159364 1.000083151 0.988610622 1.027843734 0.964027619 0.949651212 0.950667957 0.974809393 1.059898055 1.0036557 390947839 xyla Alistipes finegoldii DSM 17242 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Rikenellaceae;genus:Alistipes;species:Alistipes finegoldii; 0.810469858 0.858697741 0.814669403 0.834217766 0.851164241 0.867754787 163852786 amie Methylobacterium extorquens PA1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium extorquens; 0.958758543 0.979926743 0.968227073 1.000495549 0.908197819 0.976542427 0.919097038 0.993648014 0.998007766 0.968057783 0.938899112 0.978272107 0.913000891 0.927504299 0.895700186 0.928606234 0.959338753 0.993792065 209401812 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.949117803 0.917806065 0.952227665 0.987999267 0.936017206 0.973305689 0.974922691 0.954390046 0.966298961 0.964516779 0.958658244 0.964792929 0.904052022 0.912776142 0.903925002 0.90468072 0.963214111 0.952948453 24987055 arylest Pseudomonas putida KT2440 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 1.439952527 1.319761587 1.333086305 1.313956694 1.306136087 1.3270774 1.312832833 1.322667753 1.324360039 1.300840357 1.326067742 1.337858551 1.30019221 1.307967116 1.319205906 1.312562204 1.304412333 1.321017522 145214433 mult_ring_12DiOx Mycobacterium gilvum PYR-GCK Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 1.026991098 1.061509586 1.029870896 0.992340842 0.976903835 1.050107885 0.965937089 0.991251687 1.034186647 0.993850005 0.955084093 0.943546898 0.902085875 0.97417938 0.937195108 0.962469075 0.969156433 1.013248055 338972070 pgk Bradyrhizobiaceae bacterium SG-6C Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae; 0.810911568 0.822759514 374097443 ara Streptomyces hygroscopicus subsp. jinggangensis 5008 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces hygroscopicus; 0.972751556 1.010843359 0.992411484 0.971339238 0.938891864 0.982997657 0.896299942 0.928035846 0.943609374 0.958622896 0.924490612 0.944485569 0.92135008 0.931904435 0.877675583 0.952935723 0.986980823 1.000243455 35212659 ccmN Gloeobacter violaceus PCC 7421 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Cyanobacteria;class:Gloeobacteria;order:Gloeobacterales;genus:Gloeobacter;species:Gloeobacter violaceus; 1.11848297 1.085354071 1.075971847 1.145439675 1.062148487 1.096540013 1.106386689 1.180590273 1.087313863 1.096141892 1.085255333 1.146940767 1.039163697 1.051511411 1.031257283 1.064585665 1.098437009 1.081496496 260423426 catb Citreicella sp. SE45 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Citreicella; 1.059157478 1.049801262 1.028341763 1.053954443 1.056886074 1.069237911 1.023585688 1.045051566 1.02296017 1.032044539 1.027495785 1.037499832 1.025932586 1.071839344 1.012905863 1.036772349 1.044265009 1.048416951 189210245 protease_serine_fungi Pyrenophora tritici-repentis Pt-1C-BFP Carbon Cycling Carbon degradation protein superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 0.857846721 0.852322916 0.932411107 0.942040344 0.874179422 0.917729337 0.919546815 0.925703817 0.909829477 0.883144457 0.867324544 0.897331002 0.872440224 0.854204745 0.82555634 0.879863576 0.945781635 0.880612989 17430697 xylc Ralstonia solanacearum Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 0.954381925 0.948914738 0.949555607 0.958801293 0.874187929 0.96221508 0.879774586 0.93796476 0.954412997 0.928153846 0.883188972 0.9368149 0.884005224 0.884872004 0.889943471 0.914708985 0.959721865 0.984920375 84503535 ppx Oceanicola batsensis HTCC2597 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola batsensis; 0.956643664 0.888467625 0.919003113 0.896062727 0.919014389 0.938079153 0.935135424 0.892007363 0.918461909 0.981711315 0.948010034 0.951532462 0.915221459 0.904978426 0.850762444 0.876173534 0.948561251 0.972861213 388244931 norb Haloferax mediterranei ATCC 33500 Nitrogen Denitrification NA superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloferax;species:Haloferax mediterranei; 1.117307042 1.022000532 1.085914764 1.120782276 1.074730251 1.154867317 1.097645814 1.075769159 1.143955606 1.162790164 1.142105343 1.138977724 1.104813113 1.118722373 1.136070895 1.126321181 1.150255441 1.099257477 359394058 mer Halomonas boliviensis LC1 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas;species:Halomonas boliviensis; 0.889119464 0.89980624 0.846609173 0.892762214 0.904389276 0.839386021 0.845587198 0.864752005 0.850464522 0.893644957 0.845464642 0.887316309 0.822723204 0.875650262 0.840830412 0.816783455 0.828807165 0.898560742 364007047 terc Streptomyces sp. W007 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 1.044346015 1.000467317 0.998856097 1.015042279 1.015334622 1.027488458 1.018396882 0.986577053 0.980454582 1.028667872 1.001391483 1.020834499 0.952485499 0.987558582 0.947389074 0.974471491 0.986738551 1.011181116 344259646 exaa(moxf) Methylobacter tundripaludum SV96 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylobacter;species:Methylobacter tundripaludum; 1.157473811 1.126032585 1.136615803 1.156919283 1.082231533 1.115864134 1.089907189 1.135890678 1.135653542 1.11403314 1.103195317 1.135624617 1.083536644 1.077489177 1.079186415 1.100138003 1.162520364 1.118961462 2895862 phospholipase_B_fungi Neurospora crassa virulence degradation NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Neurospora; 0.826506685 0.85267792 0.859168508 0.852517017 0.868887108 0.847493941 0.830826744 0.835197341 0.865906 0.85652245 0.815615411 0.802063796 0.86588019 0.838836826 0.822566624 0.800291994 0.860886042 0.862505486 396928397 bphc Rhodococcus sp. JVH1 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 0.911953681 0.93930562 0.872263538 0.915657337 0.914471328 0.920238791 0.855698573 0.881894464 0.890731086 0.912306414 0.876637306 0.915515072 0.8901637 0.867183889 0.930900948 0.902309295 0.936673922 0.956536429 295394917 merb Brevibacterium mcbrellneri ATCC 49030 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Brevibacteriaceae;genus:Brevibacterium;species:Brevibacterium mcbrellneri; 0.824337083 0.923349846 0.831578939 0.877036887 0.874972223 0.912637612 0.834782361 0.822802906 0.802227849 0.889086918 0.845918556 0.863911776 0.838651909 0.827300531 0.836073118 0.832556817 0.941323018 211905957 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.80351221 0.87765714 0.806698687 0.832222166 0.796054574 0.869637354 167348194 tfda Caulobacter sp. K31 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 1.060774357 1.066044593 1.045425009 1.005971208 0.996627788 1.030301105 0.988203338 1.024593231 1.048295155 0.990341703 0.992020669 1.016676742 1.012366432 0.97992934 0.941723036 0.97481295 1.069992083 1.040362233 407307480 dehh109 Nocardia brasiliensis ATCC 700358 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia brasiliensis; 0.867051875 0.790010639 0.829581821 0.819978466 359774896 RgaE Arthrobacter globiformis NBRC 12137 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter globiformis; 0.819054434 0.837731969 0.816734742 0.800690999 346226091 ara Anaerophaga thermohalophila DSM 12881 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Marinilabiliaceae;genus:Anaerophaga;species:Anaerophaga thermohalophila; 0.791080714 0.862042969 0.829672 0.834495015 0.835746859 0.913666848 0.906719737 0.818936523 0.885503632 0.813594642 354574243 TIM Mesorhizobium australicum WSM2073 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium australicum; 1.042175984 1.022728695 0.95333424 1.162894975 1.074131127 0.953261039 1.073304116 1.114987167 1.113833462 1.014926348 1.067600859 1.157457745 1.032877682 0.977714099 1.085514316 1.07145419 1.061189951 0.948437373 184192251 alkk Burkholderia phymatum STM815 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 0.863662832 0.870330045 0.93105573 0.916889337 0.932346787 0.923557022 0.948531937 0.955427701 0.938372454 0.933103904 0.893259689 0.863388677 0.872288317 0.910356533 0.842819132 0.834723407 0.906865198 0.903223878 91684421 urec Rhodopseudomonas palustris BisB5 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 1.112973723 1.113735301 1.046302487 1.089916134 1.014266413 1.059966948 1.061514479 1.087297237 1.066733087 1.054904362 1.017603974 1.071602263 1.013367809 1.023739294 0.982732279 1.015798206 1.127884196 1.081123827 344314545 RgaE Streptomyces sp. SirexAA-E Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 1.170286351 1.152980776 1.17182357 1.154423536 1.164657854 1.194743179 1.163711528 1.165159442 1.132527429 1.12461049 1.153042201 1.149775787 1.103751264 1.100978416 1.085012447 1.101907706 1.149774404 1.162802317 68345325 cysI Pseudomonas fluorescens Pf-5 Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas protegens; 1.038693502 1.020312112 0.960997244 1.024540145 0.926238529 1.049934613 0.935518166 0.970972447 0.998790487 0.999548891 0.989692197 1.032413469 0.957690552 0.972177426 0.942331376 0.959160045 1.005660357 1.029384599 13472464 mer Mesorhizobium loti MAFF303099 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 0.854671347 0.861402786 0.817269049 0.841388411 0.805379069 0.871546767 0.781584631 0.814390534 33415333 nasa Rhodobacter capsulatus Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter; 0.952822964 0.939262826 0.991596817 1.024586084 0.965220114 0.976692346 0.967993894 0.982158315 0.975949293 1.009867211 1.02050163 1.040019973 0.946905766 0.944885876 0.895079005 0.940781244 0.949594598 0.936032869 294787173 fthfs Parascardovia denticolens F0305 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Parascardovia;species:Parascardovia denticolens; 0.937252121 0.930099121 0.935247184 0.995996316 1.009904599 0.909330285 0.942378966 0.927626966 0.991822852 0.932754692 0.960009437 1.009832383 0.930508707 0.836136914 0.841237948 0.92067087 0.908277113 0.922522563 6561867 amyA Emericella nidulans Carbon Cycling Carbon degradation Starch superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella; 1.030618902 1.082041325 1.055503394 1.094489658 1.002153502 1.038307841 1.015913867 1.001470847 0.9947397 1.007105104 0.997272239 1.064448694 0.987696457 1.012758258 0.978292301 1.044482434 1.053981713 1.062252148 260645908 xylanase Streptomyces scabiei 87.22 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces scabiei; 1.158443238 1.158183652 1.122037752 1.150322661 1.052583613 1.139977189 1.094106032 1.11387273 1.12806947 1.12925158 1.065436787 1.102043132 1.052858949 1.080063346 1.04221267 1.102017352 1.140949495 1.166526889 229321585 xylc Rhodococcus erythropolis SK121 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 0.829498467 0.81552896 0.805176343 0.838870826 0.856559843 0.813074972 0.894883058 0.814996057 0.818999032 0.849296289 0.82603717 0.790836475 0.897996166 324033566 atza Clostridium sp. D5 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium; 0.916303107 0.893694757 0.884765395 0.873551981 0.880416444 0.804808624 0.820087575 0.880491651 0.879056879 0.868780642 0.855888218 0.880915951 0.828858805 0.839508934 0.837909161 0.876328912 0.910583135 0.897113605 294340646 fccab Thiomonas sp. 3As Sulfur Sulfide Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Thiomonas; 0.909743541 0.902540785 0.916244492 0.88982953 0.890961728 0.900213658 0.88136389 0.892074353 0.902057443 0.899126787 0.861496037 0.87561901 0.836279142 0.864163762 0.825930494 0.805405826 0.912099292 0.899474016 62426307 terc Brevibacterium linens BL2 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Brevibacteriaceae;genus:Brevibacterium;species:Brevibacterium linens; 0.838661813 0.818932752 0.785240187 0.827267236 0.810264848 0.826517614 0.796636309 0.850419465 0.837480555 336297576 mannanase Paenibacillus mucilaginosus KNP414 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 0.788520598 0.813137084 0.872162468 0.805478954 0.797054323 0.827135788 310799506 ara Glomerella graminicola M1.001 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Glomerellaceae;genus:Colletotrichum;species:Colletotrichum graminicola; 0.792859519 0.823963371 0.808424344 0.804790363 1.102541438 0.785726638 350547959 mannanase Thermobacillus composti KWC4 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Thermobacillus;species:Thermobacillus composti; 0.797838207 0.840926771 0.78403002 0.839600408 0.843924775 0.810400039 0.802517898 0.79956565 0.903622104 118762773 vana Sphingomonas wittichii RW1 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 0.786081907 0.797869156 0.855641165 0.81833728 0.849019229 0.815392519 0.872605622 0.889449564 0.808116164 0.843690318 0.832809744 0.788826031 0.856803771 0.765904378 383622114 urec Halobiforma lacisalsi AJ5 Nitrogen Ammonification NA superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halobiforma;species:Halobiforma lacisalsi; 0.848802341 0.834243855 0.814450577 0.872596137 0.823719225 0.841217337 0.829532718 0.820713867 254386883 amyA Streptomyces sp. Mg1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 0.950527487 0.992739072 0.927941419 0.932006969 0.950906662 0.944630521 0.917515678 0.888179252 0.935772022 0.922658742 0.891586076 0.874695992 0.91453589 0.877739165 0.841420818 0.857584552 0.974515963 0.973754792 365827776 amyA Actinomyces sp. oral taxon 849 str. F0330 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 849; 0.817628727 0.812694975 0.848488581 0.807299982 119537378 mannanase Nocardioides sp. JS614 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 1.261759472 1.273949116 1.234184222 1.248971448 1.238419852 1.283038048 1.222885558 1.246891838 1.215475458 1.247429783 1.2318552 1.242682133 1.230898679 1.232422969 1.221507274 1.226122753 1.269383937 1.259782175 300545475 amyA Novosphingobium aromaticivorans DSM 12444 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium aromaticivorans; 1.210686595 1.173318238 1.179246615 1.134545427 1.151078679 1.183138855 1.154914512 1.151150539 1.158535279 1.186176802 1.185973963 1.19042596 1.160496151 1.154563186 1.130056599 1.171829413 1.167153286 1.191829115 83835799 pcag Roseovarius nubinhibens ISM Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius;species:Roseovarius nubinhibens; 1.30774732 1.262077719 1.279115072 1.295003498 1.281237944 1.291552551 1.295938259 1.323486442 1.277272583 1.241970942 1.261570212 1.291623298 1.257056606 1.247189087 1.282347475 1.28721593 1.277851518 1.239583891 21220080 ara Streptomyces coelicolor A3(2) Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 1.146146319 1.149687029 1.145426878 1.134673836 1.165696595 1.162616534 1.14480725 1.147904917 1.139285186 1.132304272 1.129274798 1.134656414 1.149410618 1.135434096 1.171384038 1.138119177 1.144217982 1.158824998 71554888 alkk Pseudomonas syringae pv. phaseolicola 1448A Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas savastanoi; 0.807738212 0.81842545 0.919140068 0.800559913 0.803595154 0.81763768 146404228 GAPDH_Calvin Bradyrhizobium sp. BTAi1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.921587288 0.806191 0.816943955 0.932035745 0.871798589 0.883832485 0.898719291 0.909711339 0.928615062 0.867883463 0.872385473 0.865873119 0.876892145 0.806150333 0.8009966 0.855169634 0.88650264 0.806651164 373850726 rgl Opitutaceae bacterium TAV5 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 1.175979432 1.180621851 1.156704178 1.186444328 1.183644093 1.152967521 1.159788346 1.178469179 1.167150427 1.157393185 1.17073147 1.180948031 1.126526555 1.141347252 1.124792002 1.140587198 1.159879222 1.158298835 261856654 soxY Halothiobacillus neapolitanus c2 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Halothiobacillaceae;genus:Halothiobacillus;species:Halothiobacillus neapolitanus; 0.97374842 1.042843798 1.043123485 1.035226057 1.073990234 1.083099733 1.017723481 1.051937209 1.022471523 1.051673728 1.025937275 1.051694444 1.043278122 1.033608652 1.045624459 1.083894862 1.041622879 1.030268641 192897590 ppk uncultured bacterium Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria; 0.921206014 0.919189637 0.898184715 0.953316709 0.873912403 0.955671281 0.852060012 0.89890698 0.895873892 0.822998786 0.843808499 0.886255322 0.850987171 0.844323297 0.880819718 0.965844687 0.885722154 260415177 fccab Silicibacter lacuscaerulensis ITI-1157 Sulfur Sulfide Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria lacuscaerulensis; 0.815078738 0.800489307 0.835538264 0.818329599 0.881783007 0.855423232 0.854119486 0.883716045 33391271 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.766130299 0.803352693 0.853177571 0.786105229 0.830813521 284029029 amyA Kribbella flavida DSM 17836 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Kribbella;species:Kribbella flavida; 0.958278119 0.928535433 0.92428133 0.930103976 0.931810007 0.941810262 0.90477249 0.862145487 0.921764841 0.836496256 0.912339486 0.91243194 0.844826501 0.868221622 0.829125147 0.869466686 0.94919322 0.959444811 312140375 amyA Rhodococcus equi 103S Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus equi; 0.981757965 0.999354627 0.957086047 0.96652123 0.942845111 0.96766301 0.972265458 0.986029571 0.935030067 0.948924561 0.898445991 0.904595592 0.900806241 0.924554252 0.900184849 0.833618598 0.991307435 0.962911646 373851807 alginase Opitutaceae bacterium TAV5 Carbon Cycling Carbon degradation Alginate superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 0.891640967 0.865814817 0.904926379 0.890737903 0.824387795 0.901592408 0.866495801 0.879797048 0.844652741 0.911444836 0.904596938 0.838522015 0.821859984 0.829552437 0.878682748 0.905140772 357976398 ppx Sphingomonas sp. KC8 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 0.926893471 0.973462801 0.887244166 0.97823957 0.915002269 0.911363111 0.873602434 0.917157368 0.933027265 0.896756752 0.900576567 0.934618086 0.864532808 0.877544444 0.857637117 0.886969555 0.950284317 0.896779401 256360532 alginase Catenulispora acidiphila DSM 44928 Carbon Cycling Carbon degradation Alginate superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 1.094635628 1.045553197 1.074788104 1.07814241 1.06414438 1.06885053 1.0466268 1.032252218 1.073573958 1.05033983 1.04525184 1.063592515 1.050166464 1.012607257 1.017609889 1.013560499 1.101091695 1.050542039 356877783 endoglucanase Azospirillum brasilense Sp245 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum brasilense; 1.315621036 1.28544638 1.256690798 1.265426904 1.247082253 1.24829811 1.228735345 1.257043019 1.282304933 1.256944045 1.239649267 1.277392435 1.193163988 1.20434452 1.19886484 1.218439488 1.238088428 1.249609314 358456532 amyA Frankia sp. CN3 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 0.848904661 0.890229665 0.855505456 0.890430555 0.826959812 0.871066955 0.826654939 0.832854224 0.85716005 0.83997698 0.846844948 0.82795464 0.890241568 0.888627816 0.876447262 407690231 badh Sinorhizobium meliloti Rm41 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium meliloti; 1.175281909 1.109497332 1.092835916 1.163061885 1.07866885 1.050279753 1.114204148 1.104988353 1.144124906 1.071791375 1.060870805 1.126329855 1.05425241 1.040754026 1.014691971 1.083872879 1.116103828 1.125564153 148281531 chitinase Legionella pneumophila str. Corby Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Legionellales;family:Legionellaceae;genus:Legionella;species:Legionella pneumophila; 0.885815588 0.851164083 0.800567137 0.868617331 0.821135916 0.779315827 0.835505298 0.867155404 0.827404333 0.849998599 0.819275804 0.871544199 13872675 alkb Prauserella rugosa Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Prauserella; 1.214100695 1.204257087 1.196938081 1.217682493 1.194819938 1.198670393 1.166680223 1.167112505 1.188890052 1.172776149 1.18407207 1.159382705 1.136356259 1.131295401 1.132213872 1.115420434 1.223124489 1.185650252 111036265 bend Pseudomonas putida Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 1.025044874 1.020310785 0.966377276 1.000437156 0.96711562 0.972294107 0.943945322 0.984390039 1.032257803 0.974489001 0.969388768 0.980797282 0.941477554 0.914526753 0.872048295 0.929592342 1.006672951 0.990078166 84510852 tktA Loktanella vestfoldensis SKA53 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Loktanella;species:Loktanella vestfoldensis; 1.265254067 1.267297965 1.228226418 1.27295491 1.256141867 1.321234996 1.237450632 1.260318793 1.401269721 1.221551054 1.221669001 1.294782794 1.305570862 1.192278993 1.244720886 1.261320052 1.283085994 1.240625097 312112837 ben_bcla Rhodomicrobium vannielii ATCC 17100 virulence NA NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Rhodomicrobium;species:Rhodomicrobium vannielii; 1.059956862 1.023111769 1.114437485 1.076826385 1.144777203 1.022588283 0.996907021 1.099061475 1.140540921 0.980505592 1.043762632 1.174756467 1.033501753 0.986052745 1.091206151 1.118286302 1.050774749 1.093711326 255299079 amyA Corynebacterium tuberculostearicum SK141 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium tuberculostearicum; 1.065323202 0.942403733 1.020461123 1.050192034 0.9413198 1.039107177 0.963111817 1.022656851 1.018561252 0.987835342 0.959910381 0.991229299 0.97676183 1.013081102 0.952795275 1.007651704 1.032812696 0.933539087 292597953 exaa(moxf) Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas fuscans; 0.82886192 0.861347953 0.901338908 0.871424764 0.798488472 0.881249301 0.833020612 0.882826663 0.894502677 0.863029924 0.871354523 0.879510993 0.80039284 0.809029105 0.936056888 0.875430516 238024817 vana Burkholderia glumae BGR1 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia glumae; 1.065511641 1.089414167 1.054898712 1.058906853 1.051923229 1.054358477 0.992385736 1.021382157 1.048262185 1.037578039 1.016130471 1.039588451 1.041546523 1.02767562 1.00215212 1.02237611 1.077773298 1.055505745 164456048 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 1.1036715 1.067157353 1.055483654 1.098445569 1.090298835 1.09358093 1.084975675 1.072928879 1.085460102 1.079983309 1.08835622 1.096278964 1.037239531 1.06286785 0.995505349 1.078015884 1.073745641 1.086693932 342316522 aoxb uncultured bacterium Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 0.881392313 0.89629335 0.867878856 0.849113212 0.816870871 0.896570782 0.816408696 0.871072677 0.880017086 0.860470251 0.80208027 0.819630966 0.886253057 0.803537768 0.825485158 0.832552429 0.924336551 115353435 endochitinase Chaetomium globosum Carbon Cycling Carbon degradation Chitin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium; 0.792086532 0.828270089 0.835313829 0.797507676 0.88902109 0.786119458 0.787523549 0.808051995 0.815791377 0.839250269 219948862 tktA Methylobacterium nodulans ORS 2060 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 0.877684344 0.867442919 0.885398354 0.833084158 0.823184092 0.854281734 0.86218626 0.824963323 0.854042629 0.916612177 0.854746451 0.792435268 0.843158083 0.806744665 0.873039329 0.852103264 56311637 chna Azoarcus sp. EbN1 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 0.961643861 0.91976125 0.869854128 0.918792269 0.869887562 0.892421429 1.025740192 0.893374906 0.924292672 0.905813372 1.031134268 0.875520242 0.825924759 0.842677411 0.826570545 0.815615805 0.925966107 0.924369203 318042842 tktA Synechococcus sp. CB0101 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 0.875859384 0.95493889 0.957917856 0.871724066 0.943535141 1.000057585 0.918889563 0.872230777 0.914190669 0.989843685 0.944914764 0.937745173 0.954724398 0.961887835 0.909021113 0.967615332 0.955650429 0.999278392 262635626 B_lactamase_A uncultured bacterium Virulence Antibiotic resistance Degradation superkingdom:Bacteria; 0.944277473 0.896091804 0.917900162 0.922373106 0.834845334 0.948865879 0.851515622 0.885847854 0.935594261 0.913857612 0.915206485 0.883234713 0.877205833 0.885819408 0.856072215 0.852821653 0.920484416 0.925693431 221636204 arsc Thermomicrobium roseum DSM 5159 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Chloroflexi;class:Thermomicrobia;order:Thermomicrobiales;family:Thermomicrobiaceae;genus:Thermomicrobium;species:Thermomicrobium roseum; 0.977196916 1.010957131 1.018370717 1.032799318 1.025089387 1.040675725 1.00816983 1.004071742 1.024010297 0.99323211 1.011061952 1.000907263 0.982240006 0.946276711 0.972057606 0.959519247 0.967138959 0.980817801 229611273 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.908321462 0.840057274 0.878850497 0.914040606 0.935307096 0.95040297 0.925300776 0.93552615 0.896473008 0.924543449 0.897308653 0.895125825 0.886000789 0.869021177 0.856613333 0.85470665 0.932122561 0.925284064 218757603 dsrB Desulfovibrio vulgaris str. 'Miyazaki F' Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio vulgaris; 1.253421589 1.236857793 1.201407653 1.251559518 1.2044817 1.255503299 1.195769122 1.230701634 1.218785095 1.199498737 1.210219486 1.225483563 1.197368354 1.17682563 1.202299168 1.21105986 1.249852471 1.217452659 169793352 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.280211233 1.219485569 1.223855913 1.259119198 1.222686652 1.246123473 1.209328874 1.210683294 1.233819765 1.228048825 1.220775749 1.241292321 1.204528305 1.19108303 1.215519687 1.209914649 1.253315168 1.21433894 50542666 rubisco uncultured bacterium Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria; 0.944632628 0.942005198 0.988209795 0.969560742 0.984386078 0.967948775 0.96161722 0.967905403 1.021079269 0.994279526 0.952529407 0.942158681 0.960005827 0.983714953 0.926265755 0.909439329 0.964109839 0.977538593 45272465 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.87310589 0.901934582 0.9142867 0.90079978 0.890201558 0.907922382 0.882039912 0.870669519 0.886277759 0.919627648 0.797435905 0.8723075 0.780138307 0.84639171 0.772476888 0.829953403 0.851942508 0.856793325 169866352 cutinase Coprinopsis cinerea okayama7#130 Carbon Cycling Carbon degradation Cutin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 0.850364955 0.857698816 0.888334101 0.883776414 0.822535076 0.881147128 0.855787573 0.892644399 0.822300156 0.840572817 0.868885363 0.867648443 88808846 GAPDH_Calvin Synechococcus sp. WH 7805 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 0.783628803 0.826347883 145570075 hbh Pseudomonas stutzeri A1501 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 0.964851967 0.991928772 0.980524106 0.973989049 0.950239367 0.975844834 0.948115314 0.913209711 0.982935615 0.96874016 0.979376365 0.978821461 0.952569569 0.9450498 0.924862888 0.944798556 0.973839998 0.965892246 54023386 cysI Nocardia farcinica IFM 10152 Sulfur Other NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 1.123634244 1.100277639 1.069565229 1.117703634 0.99877073 1.114612941 1.043723937 1.105729871 1.089156787 1.106800902 1.014053932 1.074890006 1.007321183 1.043628348 1.022149765 1.05322748 1.130661797 1.100055935 291197224 exoglucanase uncultured fungus Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi; 0.871672303 0.821339809 0.872370558 0.844190679 0.82767668 0.836707326 0.89782167 0.864781055 0.878996192 0.874899673 0.823317609 0.842759853 0.864652986 0.831829188 27350938 pcpe Bradyrhizobium japonicum USDA 110 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 1.188328681 1.157644102 1.185512893 1.201003685 1.176159232 1.213036278 1.160115872 1.200666081 1.196040518 1.161945258 1.170805011 1.191505032 1.16604275 1.152825612 1.165369482 1.170487046 1.214239927 1.153686015 71908387 xylj Dechloromonas aromatica RCB Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Dechloromonas;species:Dechloromonas aromatica; 1.147489665 1.150593577 1.131041731 1.118935387 1.074606998 1.157339532 1.075508465 1.134268546 1.115927909 1.121738905 1.114442667 1.128763171 1.083300886 1.112265247 1.096958909 1.142491611 1.138340191 1.1402398 145591452 aps_apra Pyrobaculum arsenaticum DSM 13514 Sulfur adenylylsulfate reductase NA superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum arsenaticum; 1.019021602 0.92025398 0.912340296 0.917158352 0.905771992 0.942810842 0.914639015 0.937316242 0.960866231 0.94593744 0.91919962 0.957971771 0.859862634 0.964271567 0.819488873 0.915476723 0.938218059 0.954433952 372272129 bphF1 Marinobacterium stanieri S30 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacterium;species:Marinobacterium stanieri; 0.923100826 0.874969003 0.975623121 0.852685452 0.879268442 0.855457362 0.863460893 0.903967087 0.848169341 0.869202539 0.930443778 0.867571348 0.877323637 0.840795327 0.894128126 0.934978383 0.898742223 37548720 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.886155259 0.825777567 0.881883249 0.931339439 0.892217969 0.891853397 0.892103967 0.91463406 0.90001337 0.875596652 0.914961767 0.884931088 0.840657272 0.833575378 0.854645572 0.835648427 0.907293708 0.869677868 171320783 chnb Burkholderia ambifaria MEX-5 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ambifaria; 0.965412184 0.948860236 0.907035603 0.944796859 0.914522756 0.931051431 0.876300658 0.927799432 0.923192657 0.953932331 0.935061932 0.917520567 0.899895564 0.891710905 0.898464404 0.920496863 0.961515157 0.959148115 333983357 mmox Methylomonas methanica MC09 Carbon Cycling Methane Methane oxidation superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylomonas;species:Methylomonas methanica; 1.26503513 1.245913658 1.222667333 1.223556043 1.234318268 1.278645205 1.225597108 1.232196725 1.240774343 1.227629953 1.231231081 1.240772497 1.221236448 1.187749359 1.175753437 1.209202178 1.259971329 1.236197926 261286280 endochitinase Geobacillus sp. Y412MC10 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 1.016521167 1.017864934 1.017678626 1.016267618 0.978739685 0.98914704 0.9442027 0.959565411 1.00119758 0.987521944 0.973196709 0.988852179 0.978260582 0.986093289 0.943588396 0.970005256 1.023309112 1.026458178 214042411 ppx Roseobacter sp. GAI101 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 0.835930964 0.80138021 0.769591366 0.858437913 374655179 pcag Saccharomonospora marina XMU15 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora marina; 0.943746813 0.944705571 0.976891593 0.929994462 0.918554146 0.946505237 0.877351174 0.909807509 0.95688984 0.918001115 0.890485545 0.953880534 0.90546179 0.94102054 0.883073077 0.910259968 0.939446648 0.958335401 159482494 Sir Chlamydomonas reinhardtii Sulfur sulfite reduction NA superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Chlorophyceae;order:Chlamydomonadales;family:Chlamydomonadaceae;genus:Chlamydomonas; 1.03398241 1.028485825 1.034221055 1.052571801 1.040087158 1.023546213 1.012443525 1.011506123 1.017901139 1.059129171 1.047977935 1.023099923 1.025316502 1.037818815 1.009965181 1.011060626 1.041552346 1.041620729 282948939 nasa Citrobacter rodentium ICC168 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter rodentium; 0.792424359 0.807143798 0.85739361 0.847078122 0.803836879 0.828364844 0.813023357 0.843503846 0.837142339 0.801680182 0.825846557 0.829322524 0.86163203 0.881227992 0.841003515 0.815321014 0.848602519 88866201 poba Jannaschia sp. CCS1 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Jannaschia; 0.888548778 0.913347177 0.837014865 0.875530449 0.875210463 0.853217398 0.843524852 0.819383762 0.91645342 0.872416985 0.849782188 0.815585234 0.889805342 0.90734932 338974341 TIM Bradyrhizobiaceae bacterium SG-6C Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae; 1.238486504 1.207309778 1.225213779 1.225040636 1.231012621 1.230696911 1.253981787 1.212844072 1.205617295 1.227212727 1.279414703 1.249181085 1.206474823 1.188820285 1.182296956 1.21058328 1.222750238 1.212647549 316981104 nirk uncultured proteobacterium Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria; 0.826243862 0.85474572 0.838115211 0.803220588 0.903908614 0.87186732 0.854701786 0.794370268 0.847055667 0.902231344 0.919129371 0.825925269 0.827044363 0.818305595 0.854255736 169793432 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.875431556 0.846682143 0.862370902 0.901327326 0.856925877 0.854971808 0.887832491 0.859807526 0.869989848 0.841420986 0.86227854 0.871900552 0.826783424 0.787970115 0.852631928 0.85393171 296282018 B_lactamase_A Citromicrobium bathyomarinum JL354 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Citromicrobium;species:Citromicrobium bathyomarinum; 0.913101624 0.966865851 0.888404539 0.883288195 0.882934605 0.888917137 0.865496812 0.896886689 0.883500022 0.896649991 0.849392094 0.889027271 0.872557247 0.89830523 0.90469298 0.86190842 0.903335246 0.906369989 63029742 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.900587243 0.964860962 0.918592205 0.887233309 0.879994313 0.911162981 0.860540602 0.893471538 0.906073942 0.835718414 0.884816983 0.875031414 0.854817285 0.849398345 0.872520438 0.881310534 0.957417898 0.932365128 15077478 dsrB Desulfofaba gelida Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfofaba; 1.322033295 1.277485321 1.294112249 1.296010266 1.272073282 1.269977355 1.256349414 1.250500362 1.28847414 1.250151256 1.25842028 1.296966885 1.242248778 1.206259555 1.231401624 1.203704136 1.297448059 1.269633911 282569826 nitro Subdoligranulum variabile DSM 15176 Organic Remediation Others NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Subdoligranulum;species:Subdoligranulum variabile; 0.872004729 0.834746085 0.944921714 0.869374564 0.858504313 0.933985465 0.875310826 0.832894888 0.873716514 0.930819909 0.92888535 0.900997202 0.808727178 0.848529996 0.810324 0.844733838 1.00734779 0.871950347 109632807 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.418639779 1.416766625 1.392486771 1.4094599 1.390033377 1.387241627 1.339396159 1.384467603 1.392328515 1.383399482 1.387394894 1.422116842 1.356365391 1.363870971 1.356026783 1.36359489 1.390039731 1.361486258 242775024 nitrate_reductase Talaromyces stipitatus ATCC 10500 Nitrogen N Assimilation NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 0.861377728 0.867079615 0.876471566 0.870474424 0.83492024 0.8540808 0.827347793 0.802305362 0.877928768 0.859795633 0.798323355 0.810159429 0.832953766 0.873852546 0.871544608 164455810 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 0.970104103 0.984887884 0.877480346 0.924094677 0.909710026 0.980832922 0.880589204 0.943373301 0.962843696 0.956354278 0.904812026 0.903848312 0.893657608 0.921735675 0.865727453 0.882062489 0.947331602 1.018556209 164456192 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 1.00726328 1.008345074 1.022587914 1.059525559 1.018131091 1.01850957 1.005716612 1.011312765 1.041148068 0.950134952 0.962119732 0.987083081 1.004206417 0.965346681 0.936544239 1.017835247 1.07127526 0.981306637 56677530 phn Silicibacter pomeroyi DSS-3 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 1.288659981 1.27359075 1.270150214 1.280558073 1.261262282 1.302007684 1.246382414 1.281597946 1.257410378 1.253875086 1.269008065 1.304498397 1.249233432 1.250626685 1.250952461 1.26828898 1.286384361 1.253651911 312194042 gdh Frankia sp. EuI1c Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 0.846403347 0.861264669 0.868752108 0.796001452 0.795238216 0.832397863 0.868759841 0.845860101 0.828099183 0.839191413 0.839533155 56798785 catechol_b uncultured bacterium Organic Remediation Aromatics Other aromatics superkingdom:Bacteria; 1.061278786 1.029138721 1.08339086 1.07677598 1.062696647 1.129507856 1.030349222 1.063870205 1.052464787 1.076593601 1.058753554 1.047710837 1.04351779 1.038361844 1.039802863 1.036329061 1.054957151 1.070732008 383463702 terc Saccharomonospora xinjiangensis XJ-54 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora xinjiangensis; 0.805335515 0.802451053 0.798401025 0.833538603 115390368 RgaE Aspergillus terreus NIH2624 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 0.978305185 0.976670795 0.962323142 0.968597184 0.983599935 0.974934942 0.933266596 0.912782315 0.953962523 0.982350192 1.021798244 0.966196135 0.97980722 0.994353181 0.968627717 0.946838551 0.991111238 0.979131648 299794015 amyA Amycolatopsis mediterranei U32 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 1.106589183 1.102340425 1.058409865 1.107980851 1.056421861 1.090005739 1.066933199 1.081075801 1.096040165 1.06401271 1.039651309 1.047700734 1.056275049 1.032453294 1.03588672 1.056294602 1.105612244 1.110830916 158314711 mhpb Frankia sp. EAN1pec Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 0.850668718 0.83317157 0.817007425 0.843194643 0.8441952 0.839057815 260649700 acetylglucosaminidase Streptomyces scabiei 87.22 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces scabiei; 0.959832177 0.943721681 0.872947609 0.958075898 0.814743509 0.888255601 0.834841792 0.888761035 0.973647606 0.901741988 0.872539573 0.848678706 0.87662226 0.838134571 0.832181895 0.970735211 0.944527663 359385425 pectinase (pectate_lyase) Pseudomonas syringae pv. actinidiae Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae; 0.867916523 0.822921001 0.799824799 0.854177863 332377172 fthfs uncultured bacterium Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria; 1.108077425 1.144695101 1.097178648 1.150098396 1.11318457 1.115766116 1.133758847 1.137104776 1.113063689 1.0927801 1.106011662 1.144568362 1.097984339 1.077280851 1.110472324 1.113327761 1.127614718 1.060905118 163857840 ppx Bordetella petrii DSM 12804 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella petrii; 1.39252676 1.368988915 1.334104584 1.339054021 1.357161138 1.395481988 1.334423537 1.365038849 1.360540636 1.353659299 1.349679979 1.353135775 1.336308486 1.348933283 1.310684528 1.306961852 1.370081289 1.361982817 391318737 tehb Shigella flexneri 1235-66 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Shigella;species:Shigella flexneri; 1.217290905 1.219522077 1.226317038 1.205422025 1.190952646 1.223002574 1.184818451 1.206065 1.182395465 1.212069683 1.19194949 1.215799606 1.185732128 1.186339934 1.144364427 1.175413008 1.200616418 1.212014237 237858249 GAPDH_Parabasalia Gigantomonas herculea Other Phylogenetic NA superkingdom:Eukaryota;order:Cristamonadida;family:Lophomonadidae;genus:Gigantomonas; 0.831011016 0.818287374 0.843770291 0.793697959 0.915677348 0.819278837 187923465 bphF1 Burkholderia phytofirmans PsJN Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 0.983677605 0.979880764 0.984460342 0.970104723 0.925957872 1.026166199 0.931423078 0.898370243 0.96579765 0.995900078 0.935089065 0.969407884 0.964216231 0.958416904 0.944727124 0.931016012 0.999497157 0.974819591 115520245 mdlc Rhodopseudomonas palustris BisA53 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 1.023485178 1.011774122 1.015455744 1.041725345 1.023989422 1.030559117 1.037924787 1.027319822 1.03934862 1.01652105 0.981999452 1.012484873 0.998837636 0.949483525 0.954112347 0.950793346 1.031456419 1.029873928 359768275 amyA Gordonia polyisoprenivorans NBRC 16320 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia polyisoprenivorans; 1.451419924 1.424008895 1.435548388 1.45467055 1.431272932 1.463167006 1.440216552 1.461625689 1.431384249 1.415762001 1.432494858 1.441445652 1.408405672 1.390360912 1.407752436 1.413746826 1.43144148 1.398243451 289705217 amyA Micrococcus luteus SK58 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Micrococcus;species:Micrococcus luteus; 1.545698097 1.529987044 1.530138279 1.520131159 1.493804821 1.560570996 1.50068495 1.510686676 1.495937544 1.524532195 1.514301984 1.51689518 1.471137431 1.474072307 1.475659847 1.503975775 1.522441283 1.503599346 52347648 RgaE Bacillus licheniformis ATCC 14580 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus licheniformis; 0.989524355 1.006205259 0.88064731 0.926446903 0.84322007 0.922542293 0.867294877 0.988928083 1.003897338 0.876880228 0.820652492 0.923569442 0.892212109 0.877474049 0.817504576 0.863962712 0.958446874 0.978086652 187921394 pcag Burkholderia phytofirmans PsJN Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 0.986219919 1.000613808 0.924993405 0.979594844 0.918628476 0.938145322 0.886509856 0.92410428 0.956876969 0.95180019 0.918286116 0.948784122 0.899373772 0.912450479 0.909817066 0.93786548 0.975954816 0.987110199 212685126 dmsa Providencia alcalifaciens DSM 30120 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia alcalifaciens; 0.870570113 0.894570804 0.859627053 0.925893092 0.851816409 0.829120266 0.855516287 0.912290934 0.892307154 0.850226694 0.858289624 0.871265103 0.820733913 0.838983715 0.849322874 0.819513969 0.877613052 0.876171743 398997740 bphc Pseudomonas sp. GM21 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.915133371 0.893973065 0.937406357 0.953974343 0.89317743 0.941925986 0.923039715 0.885556694 0.937502217 0.934861329 0.925552732 0.934143711 0.914380532 0.87336883 0.86457103 0.908881564 0.93495247 0.869455257 238750148 alginase Yersinia rohdei ATCC 43380 Carbon Cycling Carbon degradation Alginate superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia rohdei; 1.085537257 1.174859899 1.100669207 1.029070043 1.081461655 1.085330561 1.080083148 1.064718087 1.106448348 1.075905478 0.979467513 1.077385063 1.007572867 1.064241768 1.069719357 1.055865542 1.134299071 1.112933984 5732185 alginase Corynebacterium sp. ALY-1 Carbon Cycling Carbon degradation Alginate superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium; 1.040918342 1.025595342 0.999827707 1.037047117 1.025551681 1.044192314 0.932487859 0.967646665 1.014710975 1.029836641 0.956187208 0.995398677 0.987286031 0.981143939 0.942807773 1.009671022 1.062618516 1.023388051 116804624 nasa uncultured prokaryote Nitrogen Assimilatory N reduction NA 0.795698449 0.832233093 0.823218071 0.895555131 0.84960016 0.821313613 0.839574221 0.850646254 0.812258508 0.784084663 0.861865725 0.818752899 0.833915293 0.858881816 0.819950498 332012931 ara Sphingomonas sp. S17 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 1.001196408 1.019819043 0.97953405 1.006892057 1.002481556 0.971773638 0.99199057 0.986683054 1.020503537 1.008029244 1.001069737 0.971475422 0.991331961 0.98511976 0.946041081 0.981970313 0.990565209 0.984835884 340841579 nirs uncultured denitrifying bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.070171099 1.044302922 1.055612029 1.078204371 1.070493044 1.026047907 1.041724403 1.050197791 1.049749926 1.032414093 1.010780343 1.087554302 1.011043148 0.945228637 1.002843543 1.002449396 1.026924177 0.994792547 154150739 codh Methanoregula boonei 6A8 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;family:Methanoregulaceae;genus:Methanoregula;species:Methanoregula boonei; 1.007284887 0.981370669 1.023045759 1.039806914 1.073915801 0.96710697 1.010559593 0.942132298 1.040859187 1.018699364 1.034344526 0.98920772 0.989080231 0.968545938 0.913085885 1.00337604 0.988592225 0.953306695 120590551 pectinase (pectate_lyase) Acidovorax citrulli AAC00-1 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax citrulli; 0.796909379 0.789513457 0.811297396 0.843725503 0.816379141 134101441 nirb Saccharopolyspora erythraea NRRL 2338 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 1.245719922 1.220378911 1.207048553 1.204393925 1.200264984 1.243564417 1.195484239 1.197338749 1.202265464 1.213480039 1.19861248 1.205406651 1.192840129 1.205563481 1.184095444 1.195613408 1.220103187 1.230045408 378784171 tfth Blastococcus saxobsidens DD2 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Geodermatophilaceae;genus:Blastococcus;species:Blastococcus saxobsidens; 1.174284617 1.149720425 1.127500721 1.141467003 1.127679873 1.156045847 1.082547248 1.121927502 1.129185244 1.111198265 1.110672719 1.155411987 1.11613883 1.112401153 1.081231415 1.119829114 1.154426662 1.118598076 78169697 amyA Synechococcus sp. CC9902 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 0.884232713 0.831953689 0.83622348 0.883248149 0.836413262 0.785098393 0.87395019 0.902547837 0.871303997 0.841773872 0.905021513 0.807215765 0.820313701 0.854083376 0.861061409 0.854310789 237876503 tfda Burkholderia glumae BGR1 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia glumae; 1.024479629 1.075255985 0.93176583 1.039338984 0.987241453 1.025773937 0.961203413 0.961705419 1.012466798 1.00575186 0.972529002 1.007860393 0.960893337 0.971563611 0.950711778 0.96065702 1.018760561 1.094701636 315589607 amyA Intrasporangium calvum DSM 43043 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Intrasporangium;species:Intrasporangium calvum; 1.020398943 0.993696733 0.966732792 1.004170117 0.972902339 0.980277633 0.962104159 0.990334248 0.977760652 0.990843539 0.968881154 0.991688349 0.96331124 0.964960348 0.940533281 0.94578933 1.023224639 0.970861696 211905425 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.831980169 0.808346773 0.836662545 0.820544514 0.862868523 0.812141417 0.817940689 0.837072825 0.827888741 119391647 narg Rhizobiales bacterium D5-11.1 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales; 0.933111515 0.92798905 0.912491693 0.905817423 0.878262958 0.889427947 0.884791446 0.929059644 0.909991813 0.929776753 0.903286362 0.881052128 0.875562078 0.872135256 0.870452759 0.894075171 0.899500647 0.954968912 149821035 linb Plesiocystis pacifica SIR-1 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Nannocystaceae;genus:Plesiocystis;species:Plesiocystis pacifica; 0.90548464 0.994101373 0.898470988 0.934668412 0.908107339 0.926262031 0.860964447 0.857914498 0.925695687 0.874894461 0.835831493 0.918453105 0.902921335 0.890193081 0.875845097 0.855758773 0.937219835 0.991450221 342859942 cutinase Mycobacterium colombiense CECT 3035 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium colombiense; 1.163018161 1.144891191 1.171047364 1.173109234 1.145821201 1.160149112 1.147919724 1.155869877 1.166159508 1.137925265 1.12898675 1.191355173 1.152450297 1.123954895 1.145122012 1.110814664 1.150855614 1.139810149 148850486 chna Bacillus sp. SG-1 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 0.890181411 0.923516663 0.894138615 0.971684131 0.920949662 0.9498344 0.921946892 0.979726243 0.91536771 0.864271944 0.942933577 1.011362384 0.923367202 0.903451984 1.031173152 0.850589319 0.911703249 242221597 amyA Postia placenta Mad-698-R Carbon Cycling Carbon degradation Starch superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Postia;species:Postia placenta; 1.067500744 1.016521221 1.032377754 1.077802212 1.029120483 1.061362394 1.019830725 1.035023938 1.045566276 1.039980582 1.041347225 1.023035576 0.976864475 1.038557988 0.974996881 0.993978831 1.0719117 1.06344426 347527138 mer Sphingobium sp. SYK-6 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium; 1.025491195 1.05576869 0.983598241 1.034642176 0.999067688 1.032746948 0.982099519 0.955179892 1.020226909 0.959634756 0.962693512 0.988613194 0.941866861 0.938753262 0.941319788 0.957786541 1.01889845 1.035735121 307587107 amyA Burkholderia sp. CCGE1003 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 1.048020626 0.998448903 1.020074484 1.013567398 1.038825242 1.047593808 1.055519559 1.082166614 1.045575454 0.989025438 1.035326193 1.034754948 1.004908501 0.973967029 0.925982395 0.955042311 1.004625979 0.995612372 206677247 vdh Rhodobacterales bacterium HTCC2083 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 0.974668515 0.924129872 0.937581574 1.039186976 0.919442687 0.954704455 0.928820889 1.050568891 1.023206761 0.926238108 0.943174481 0.956909949 0.946398283 0.935071529 0.944193631 1.010796122 0.995275713 0.937545221 209485959 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.065796124 1.028261929 1.019307967 1.01321014 1.007339717 1.095924011 0.952027452 0.970084075 1.018408003 0.9987007 1.044507967 0.974071861 0.974578559 0.991840594 0.983276556 0.997912763 1.175402254 1.044228452 119960877 pcag Arthrobacter aurescens TC1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter aurescens; 1.234429552 1.158299829 1.192811563 1.237403506 1.179638712 1.176558569 1.170946453 1.177056193 1.203391505 1.178550273 1.171583751 1.211286391 1.158400928 1.135530262 1.183107676 1.174463621 1.199783423 1.164506349 257442683 nosz Campylobacter gracilis RM3268 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter gracilis; 0.847330525 0.859173334 0.848757839 0.845168685 0.899332314 0.863164978 0.823979866 0.834045216 0.840889272 0.843095152 0.901128999 0.849203311 0.887828203 0.856417281 0.86967756 0.903283426 0.894280008 328841616 xylanase Asticcacaulis biprosthecum C19 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis biprosthecium; 0.917681332 0.912077846 0.892899431 0.904805021 0.912746047 0.920467255 0.889829198 0.89918648 0.898900962 0.973330048 0.895436966 0.903227403 0.855772515 0.899107306 0.839980207 0.923950055 0.985043957 406915765 atza uncultured bacterium Organic Remediation Herbicides related compound NA superkingdom:Bacteria; 0.78551327 0.833398761 0.809206454 0.860946689 0.866618347 0.814804921 0.818686617 0.789235512 0.839203045 0.844682181 0.806493002 0.838754282 316918611 terc Enterobacteriaceae bacterium 9_2_54FAA Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae; 0.845818985 0.876954286 0.799950766 0.881273344 0.854870137 0.835507621 0.871694235 0.861289446 0.803951201 0.819408312 0.862440218 0.860461601 0.857980233 312218535 alpha_galactosidase_fungi Leptosphaeria maculans Carbon Cycling Carbon degradation Other superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Leptosphaeriaceae;genus:Leptosphaeria; 0.838252014 0.855766664 302696017 Glucose_oxidase_fungi Schizophyllum commune H4-8 Carbon Cycling Carbon degradation glucose superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 0.942239174 0.953997365 0.848687927 0.920306552 0.894873584 0.929894534 0.861838408 0.92025229 0.917282381 0.921135799 0.864837359 0.878459759 0.878375043 0.900624796 0.845778341 0.889191474 0.94255211 0.945022224 1172165 phenol_oxidase Trametes versicolor Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Trametes; 0.772096455 0.829195712 56963827 atza Bacillus clausii KSM-K16 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus clausii; 0.936246425 0.898505425 0.953519885 0.936838213 0.873515616 0.923376924 0.923598224 0.925792353 0.918379228 0.947526286 0.928955541 0.913018401 0.90879457 0.941155803 0.83609577 0.968584825 0.930190539 0.922760553 30698534 catb Rhodococcus erythropolis Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 0.896560169 0.924046618 0.902878666 0.913094672 0.911070394 0.954629803 0.924847976 0.891570963 0.901499101 0.933121295 0.905250265 0.94683129 0.942184846 0.898235715 0.953228352 0.907347209 0.939770597 0.929394573 83814922 amyA Salinibacter ruber DSM 13855 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;order:Bacteroidetes Order II. Incertae sedis;family:Rhodothermaceae;genus:Salinibacter;species:Salinibacter ruber; 0.793973607 0.79920377 0.787281461 0.889144681 315588570 amyA Intrasporangium calvum DSM 43043 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Intrasporangium;species:Intrasporangium calvum; 1.112416713 1.039292538 1.085168899 1.101387368 1.103500436 1.1231023 1.096095055 1.087818688 1.071684327 1.084257418 1.034516866 1.091089329 1.002517719 1.02408349 0.974663474 1.034861725 1.087045633 1.084060588 46318036 tfth Ralstonia sp. SJ98 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 1.264997017 1.264059539 1.241225501 1.246841136 1.227857145 1.293593039 1.240806946 1.240692902 1.245797972 1.260462618 1.250740187 1.256203899 1.220216037 1.222142065 1.215628391 1.230397118 1.240005404 1.279721629 257069117 dmdA Brachybacterium faecium DSM 4810 Sulfur DMSP degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dermabacteraceae;genus:Brachybacterium;species:Brachybacterium faecium; 0.951326649 0.888557015 0.954491857 0.952197985 0.963634319 0.915818456 0.948538794 0.963924229 0.940804173 0.935303272 0.933810727 0.940565684 0.911589771 0.901263756 0.899169655 0.87060284 0.914938927 0.919722393 295982796 mcra uncultured archaeon Carbon Cycling Methane Methanogenesis superkingdom:Archaea; 1.008143148 0.963223692 0.922743706 0.963481816 0.931113688 0.946280228 0.956491621 0.988329221 1.001989506 0.939078948 0.942472307 0.982736002 0.920980919 0.906182923 0.918453934 0.936745529 0.966255307 0.938256472 260652457 xylanase Streptomyces scabiei 87.22 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces scabiei; 0.969355719 0.957617595 1.004465589 0.972602025 0.987343293 0.981404477 0.97520224 0.975268788 0.951060674 0.976792407 0.952409795 0.932263654 0.909411522 1.059255507 0.911932503 0.876898755 0.966312026 0.999866206 29828669 nira Streptomyces avermitilis MA-4680 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 1.26562055 1.237993151 1.231190289 1.235274615 1.213077493 1.24263236 1.198490076 1.212810549 1.233694543 1.230675584 1.210377153 1.230538252 1.190096582 1.188678173 1.167676368 1.20069852 1.257627466 1.23071501 336004998 urec Lachnospiraceae bacterium 3_1_57FAA_CT1 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae; 1.021140587 1.128741185 1.057153784 1.037175707 1.03690934 0.999715941 0.967354411 0.945294388 0.990191472 1.005146982 1.024385495 1.034659414 1.003916291 0.960676119 0.959889082 0.961445499 0.976296473 0.993241921 118720167 arsc Burkholderia multivorans ATCC 17616 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 1.314062268 1.302035443 1.277215087 1.306093086 1.290964617 1.321086501 1.252947883 1.244317384 1.269273817 1.281390312 1.273949141 1.289905153 1.285073396 1.267627917 1.248544274 1.283731911 1.323998158 1.277458549 24421491 nirs uncultured organism Nitrogen Denitrification NA 1.009028535 0.96155383 0.979900418 0.955458133 1.036963536 1.002361288 0.965987242 0.92423347 0.987449681 0.987534643 1.013260856 0.975880671 0.928371299 0.947212281 0.911893175 0.960811581 1.029930738 0.983632582 379988667 dsrB uncultured bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.817760942 0.919599328 0.881769316 0.971329352 0.896338497 0.915850386 0.922666954 0.94131816 0.93827102 0.904091029 0.917612109 0.927035783 0.915919283 0.880385436 0.809046678 0.893857687 0.883710245 0.934174973 325547945 cysJ Xanthomonas gardneri ATCC 19865 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas gardneri; 0.978403274 0.952466558 0.952923549 0.964340383 0.864518715 0.949607302 0.884394832 0.904425494 0.949154204 0.925350311 0.890588603 0.891883601 0.898333389 0.888891622 0.879751029 0.912840893 0.951469578 0.935692703 159472825 gdh Chlamydomonas reinhardtii Nitrogen Ammonification NA superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Chlorophyceae;order:Chlamydomonadales;family:Chlamydomonadaceae;genus:Chlamydomonas; 1.025531291 1.089087915 1.015587358 1.054553037 1.03760636 1.070288309 0.993178497 0.984139258 0.989715805 1.052069811 1.052204115 1.06822904 1.042244838 1.051649633 0.972514324 1.024573733 1.036296948 1.076333115 339323788 pcpe Cupriavidus necator N-1 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 0.826540707 0.807038303 0.827251511 0.814827579 0.786531401 0.915584965 0.787114931 0.826033623 0.811897551 0.82214 164423719 phospholipase_D_fungi Neurospora crassa OR74A Carbon Cycling Carbon degradation Phospholipids superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Neurospora;species:Neurospora crassa; 0.857422521 0.861424656 0.874520096 0.808836845 0.826501072 0.857670446 0.84316126 0.860756948 0.870587137 0.893599032 26278916 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.145669995 1.188535303 1.157549615 1.128040188 1.139606148 1.183251505 1.137218609 1.137833839 1.120440777 1.126114033 1.268463253 1.112738797 1.135060219 1.156774722 1.127139901 1.11906343 1.128258025 1.179226983 284035282 xyla Spirosoma linguale DSM 74 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Spirosoma;species:Spirosoma linguale; 0.865485062 0.881443643 0.863434751 0.82079959 0.803795756 0.815803162 0.826914476 0.91327836 0.889347632 0.884641461 0.838685613 0.782319448 0.809529773 119391597 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.421863118 1.36165374 1.376696531 1.401860933 1.357351236 1.413715141 1.36384599 1.402338353 1.377699622 1.344752547 1.376178969 1.361287108 1.349254703 1.302756121 1.328844111 1.364655066 1.413166165 1.338406811 338823153 arsc Agrobacterium tumefaciens F2 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 1.106123656 1.123396063 1.131458599 1.099739323 1.054143616 1.120712635 1.194606362 1.097812661 1.064641926 1.142236756 1.052435484 1.0832507 1.019830546 1.050191099 0.997661997 1.092634817 1.082751491 1.087998986 319417625 acetylglucosaminidase Bacteroides helcogenes P 36-108 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides helcogenes; 0.852340823 0.804011486 0.857696893 0.929211249 0.819133235 0.816680091 0.851923529 0.910877681 0.840186544 0.826179547 0.859009522 0.832046095 0.888722556 214031349 nhh Ruegeria sp. R11 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 0.844903119 0.814384999 0.844480697 0.890780245 0.8408557 0.859776333 0.863282753 0.849233802 0.823896442 0.863452293 0.909170001 0.934241607 0.832443613 86748877 nira Rhodopseudomonas palustris HaA2 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 1.055747276 1.072781428 1.03266188 1.058049642 1.015499048 1.037797841 0.976602108 0.971140566 1.023011578 0.997496958 0.994858353 1.044859636 1.005622793 1.039202477 0.952997292 1.016704229 1.046665267 1.054682555 373479046 CsoS1_CcmK Singulisphaera acidiphila DSM 18658 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Singulisphaera;species:Singulisphaera acidiphila; 0.790698809 0.859092316 0.892597605 0.84059479 0.889614557 0.818381637 0.842263303 0.87045182 0.841963894 0.76471354 190687980 PRI Cellvibrio japonicus Ueda107 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio;species:Cellvibrio japonicus; 0.82447968 0.852068653 0.81484233 0.837679314 0.830967746 0.828016112 0.798805406 0.804679927 0.862801163 0.805822187 0.81352007 0.829190982 0.858846331 242207727 exopolygalacturonase_fungi Postia placenta Mad-698-R Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Postia;species:Postia placenta; 1.041740597 1.02951325 1.007910826 0.989244123 0.960130807 1.04836033 0.985998684 1.005594243 0.993733382 1.017877626 0.967309381 0.988170283 0.962716637 1.139631514 0.947701736 0.943109214 1.01571578 1.028518022 300023013 cysI Hyphomicrobium denitrificans ATCC 51888 Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium;species:Hyphomicrobium denitrificans; 0.958970252 0.976270748 0.983302166 1.000669347 0.985359696 0.971720699 0.970739735 0.996480787 0.972294895 0.971706287 0.948544088 0.971901895 1.002898303 0.928289506 0.966182218 0.974498852 0.992350813 0.948331819 85826036 alkk Roseobacter sp. MED193 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 0.893929504 0.864758346 0.845788037 0.87273589 0.816621845 0.805349744 0.873390823 0.867997161 0.798728198 0.862310233 0.836916126 0.884289746 84517386 ppx Loktanella vestfoldensis SKA53 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Loktanella;species:Loktanella vestfoldensis; 0.792458091 0.81963153 0.818914007 0.804605378 0.814573158 0.805842749 45386199 narg unidentified bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.033665232 1.034151419 1.056181012 1.019802369 1.01736663 1.007929078 0.976086649 1.005170844 0.998055229 1.034385903 1.007734863 1.004309989 0.966461502 1.013179473 0.924241218 0.993012781 1.008397956 1.058635531 163261089 Sir Bordetella petrii Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella; 1.153275994 1.12194172 1.128111338 1.14834974 1.13704052 1.166902711 1.156391929 1.16026875 1.133616007 1.146406782 1.134984505 1.1529387 1.130811141 1.125845855 1.108008588 1.120546556 1.137732695 1.1319549 50541803 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.095303337 1.088972299 1.076073435 1.101087203 1.07812395 1.111290582 1.043201903 1.080523733 1.128289584 1.059995514 1.015546339 1.080362034 1.044380957 1.061602416 1.013807536 1.050092863 1.122112293 1.1180429 153962594 sqr uncultured bacterium Sulfur Sulfide Oxidation NA superkingdom:Bacteria; 1.305202106 1.242873561 1.278208511 1.317328623 1.250184361 1.232840621 1.234920327 1.253005332 1.291620609 1.239543758 1.258963818 1.283267719 1.225236163 1.185024705 1.225011209 1.23834134 1.262649932 1.222714283 363719562 amyA Acetobacteraceae bacterium AT-5844 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae; 0.924139331 0.829975135 0.808351943 0.900334602 0.819990036 0.84513793 0.868292003 0.886499893 0.941820523 0.85327256 0.803139449 0.842282242 0.866166996 0.842755697 0.870480879 0.874141414 0.858728972 56478449 ben_bcla Aromatoleum aromaticum EbN1 virulence NA NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 1.038169428 1.070334766 1.067223498 1.060349099 0.999015192 1.046438535 1.019676106 1.07192594 1.049029319 1.036714156 0.996210978 1.033425588 0.935527211 1.006942794 0.910369352 1.009831645 1.032939527 1.064993967 126620798 CsoS1_CcmK Cyanothece sp. CCY0110 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 0.801844317 0.831778435 0.803678177 0.797427583 0.842491383 0.817018804 0.835723686 0.878571711 0.79204316 0.829337807 0.815000855 0.893063443 0.838554355 0.828670962 0.834022312 0.830225501 354960250 tktA Bradyrhizobium japonicum USDA 6 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 0.837636671 0.794225198 0.834509291 0.846065768 0.886582336 0.849896891 0.867954062 0.804293309 0.860649405 0.843798212 0.862406906 0.834564393 0.849020257 0.833814158 0.811457984 0.840608924 0.859928312 84383340 terc Janibacter sp. HTCC2649 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Janibacter; 1.133734967 1.174235153 1.129730117 1.135644937 1.119316537 1.183985809 1.131062992 1.127462837 1.144660067 1.114892504 1.108568161 1.123228626 1.11318264 1.115634994 1.113184838 1.126193723 1.173434885 1.17428522 226317259 alkk Deinococcus deserti VCD115 Organic Remediation Others NA superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus deserti; 0.874603235 0.822662071 0.820257038 0.782384296 0.813393984 50542676 rubisco uncultured bacterium Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria; 0.904890001 0.8493462 0.817352502 0.889439406 0.914836565 0.913588959 0.881573849 0.925421126 0.904577902 0.918023898 0.830525395 0.899025151 0.865691282 0.893377259 0.814965476 0.854360482 0.883324179 0.903803319 192359871 FBP_aldolase Cellvibrio japonicus Ueda107 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio;species:Cellvibrio japonicus; 1.058088873 1.036816301 1.026611705 1.044100813 1.018748326 1.023815503 1.003287581 1.033348215 1.034692777 0.998792174 1.050500264 1.035717455 0.980456682 0.95636314 0.898077846 0.990056729 1.028942039 0.99083976 152985552 vana Pseudomonas aeruginosa PA7 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 1.263893541 1.272186402 1.238916567 1.251041377 1.219877574 1.28434088 1.208953212 1.23026159 1.244379587 1.25465682 1.225063389 1.234284966 1.195552307 1.256776858 1.17322544 1.222119009 1.25052858 1.245732202 121999097 FBPase Halorhodospira halophila SL1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Halorhodospira;species:Halorhodospira halophila; 0.847582927 0.865500732 0.830364211 0.830370614 0.811492702 0.839254184 0.853802045 0.854768943 0.843230259 0.820581773 0.822370217 0.836254532 0.838939434 0.898641696 114195550 phospholipase_D_fungi Aspergillus terreus NIH2624 Carbon Cycling Carbon degradation Phospholipids superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 0.839602871 0.797235264 0.832189931 0.764407563 0.822683252 302337679 acetylglucosaminidase Spirochaeta smaragdinae DSM 11293 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Spirochaeta;species:Spirochaeta smaragdinae; 0.817092681 0.803917042 0.904964671 0.861471256 0.839788224 0.859973856 0.867169217 0.894852806 0.835834791 0.826904626 0.881360248 0.816885447 0.818996537 0.896606534 0.845230674 392723554 mdlb Novosphingobium sp. Rr 2-17 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 1.065483357 1.059410228 1.024919876 1.042712887 1.018339208 1.012670195 0.982710276 1.005200164 1.052143235 1.020606142 1.000946488 1.010674707 0.965987283 1.012459756 0.931963901 0.981610241 1.050391599 1.16099357 264680860 pgk Comamonas testosteroni CNB-2 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 0.985228953 0.943623997 0.956859234 0.996771686 0.974706631 0.971522099 0.95009521 0.988958746 0.97989602 0.960955631 0.969722051 0.978028252 0.932382999 0.913121758 0.906395899 0.966163781 0.970983178 0.925447515 299134778 SoxC Afipia sp. 1NLS2 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Afipia; 1.005829979 1.073239464 0.963891216 0.954433065 0.888103166 0.891672088 0.885346416 0.903313776 0.968587358 0.9430834 0.932073881 0.904229495 0.915044908 0.922230235 0.860317283 0.897117428 0.977770915 0.952821141 84704123 linc Parvularcula bermudensis HTCC2503 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Parvularculales;family:Parvularculaceae;genus:Parvularcula;species:Parvularcula bermudensis; 1.278350856 1.26271996 1.27974364 1.278653467 1.251988391 1.276380734 1.261449772 1.266535357 1.258669726 1.308723997 1.289824119 1.296558068 1.233973979 1.26226267 1.232022036 1.275765057 1.274314032 1.273506019 157679463 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.780019693 0.821958714 0.841068067 0.804307505 229591541 mhpa Pseudomonas fluorescens SBW25 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 0.797325204 0.819374113 0.789299498 0.805419582 0.814404803 0.833034702 189419921 ppx Geobacter lovleyi SZ Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter lovleyi; 0.917297251 0.930424068 0.92566662 0.955049267 0.935889249 0.879107399 0.936930536 0.925144515 0.914169358 0.925037066 0.88428788 0.971222461 0.891369424 0.882189269 0.854614937 0.888452456 0.89237298 0.885242661 116090313 aoxb Bosea sp. WAO Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bosea; 0.878838281 0.927305198 0.933266366 1.073595752 0.933701042 0.942206186 0.902477606 0.940640106 0.897465609 0.925273124 0.94303955 0.907845748 0.875653173 0.852377536 0.857319229 0.841656849 0.900969607 0.905963704 270507999 pula Streptosporangium roseum DSM 43021 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 0.954231201 0.974201585 0.982586778 0.990061963 1.006946252 1.007231796 1.007297697 1.008865939 0.979446675 0.983942194 1.007494481 0.97905556 0.961516832 0.951440628 0.865687688 0.887515095 0.986325692 0.976874996 299006964 Rubisco_Alveolata Chromerida sp. RM11 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Eukaryota;phylum:Chromerida; 0.992356832 0.974186344 0.972507941 0.998580748 0.984581645 0.98785169 1.00508982 1.000803839 0.968101371 0.951939331 0.890774309 0.968621302 0.941114194 0.89638519 0.899445278 0.960872579 1.013898447 0.956517014 152992096 SoxA Sulfurovum sp. NBC37-1 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;genus:Sulfurovum; 0.922139883 0.968773098 0.945553637 0.933569142 0.962071132 0.936952371 0.924146753 0.895721811 0.919668644 0.875875412 0.915923042 0.899484887 0.917637789 0.882522768 0.882662254 0.89986519 0.951421658 0.9383717 71383714 nasa Symploca atlantica PCC 8002 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Symploca;species:Symploca atlantica; 0.905495305 0.854282929 0.867420076 0.85429002 0.871222769 0.941967973 0.858908757 0.854182061 0.830082825 0.839942913 0.828937843 0.85516935 0.843888473 0.816523042 0.868511719 0.873754447 0.918896662 146192230 soxY Bradyrhizobium sp. ORS278 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 1.034275849 1.03649735 1.034777478 0.976522446 0.997757095 1.159073128 0.989816864 0.946162289 0.945519317 1.123961461 1.076514371 1.061303572 1.084039613 1.153492503 1.131571246 1.103880609 1.108048575 1.116171317 66964859 amyA Arthrobacter sp. FB24 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 1.070583788 1.068861071 1.095261663 1.145926517 1.17880078 1.224726691 1.041308958 1.084050065 0.967041946 1.018585578 1.050365579 1.069003402 1.029102962 1.047298184 0.968971131 1.067174846 1.118110989 1.074836167 198262961 arsc gamma proteobacterium HTCC5015 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 0.877425667 0.850538637 0.882647091 0.83381081 0.84931816 0.838122913 0.896914896 0.837174582 0.875619375 0.868583457 27376476 cellobiase Bradyrhizobium japonicum USDA 110 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 1.015276364 1.077363202 1.01229298 1.044671392 1.076316956 1.079372307 1.075038194 1.128211906 1.024029576 1.008727543 1.012752324 1.04019861 1.030958057 1.022098468 1.006283693 1.085070853 1.011440756 1.074803651 373464240 xylanase Lactobacillus kisonensis F0435 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus kisonensis; 0.812819786 0.856154715 0.807762299 0.799049446 0.806467905 0.832571131 0.829469199 0.821312538 0.824704983 0.836715235 0.879816258 0.80686592 0.808287487 153962722 sqr uncultured bacterium Sulfur Sulfide Oxidation NA superkingdom:Bacteria; 0.851987863 0.869485141 0.874155152 0.891726279 0.840672174 0.824545813 0.844975956 0.924059247 0.89717417 0.904486916 0.897896184 0.914367945 0.867465756 0.866390519 0.889621404 0.882841517 0.919752151 0.858343506 330688066 aoxb uncultured bacterium Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 0.859436796 0.90777171 0.875769083 0.856671866 0.89069228 0.907032611 0.889627394 0.852653368 0.83244199 0.9212785 0.876271377 0.907246715 0.882303454 0.860023373 0.895761823 0.834185321 0.887556671 0.913726318 291197154 exoglucanase uncultured fungus Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi; 0.811375567 0.775266457 408781979 badh Mycobacterium kansasii ATCC 12478 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium kansasii; 0.834135243 0.878331086 0.820253911 0.849381211 0.879773689 0.873051416 0.828219125 0.850989811 0.887471201 169857040 nagg Coprinopsis cinerea okayama7#130 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 0.823710902 0.79865287 0.825150887 0.805585254 0.803435228 0.815867382 0.824830074 0.86767923 394311910 B_lactamase_A Acidovorax sp. CF316 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 0.777599262 0.863554829 0.7991469 0.791736179 0.832814533 0.846474913 0.833836634 0.896841467 71733895 trzn Pseudomonas syringae pv. phaseolicola 1448A Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas savastanoi; 1.011862566 1.144829024 1.099279664 1.042953214 1.099011295 0.985948469 0.937044652 0.902507265 1.020988155 1.028970856 33571857 ppk Bordetella pertussis Tohama I Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella pertussis; 1.560627961 1.513373452 1.503523181 1.51741222 1.487964238 1.558233991 1.484204242 1.518867793 1.490471597 1.491066632 1.504926261 1.495164604 1.471091037 1.480074278 1.435954245 1.48312291 1.526862269 1.500320687 302445931 amyA Streptomyces sp. C Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 1.485143513 1.442017822 1.445258225 1.457685559 1.437345805 1.478732835 1.449953328 1.457231463 1.447174615 1.442336336 1.448233005 1.456911997 1.413805603 1.398877965 1.420565574 1.449556821 1.461399202 1.441401215 294476545 ccmL Rhodobacter capsulatus SB 1003 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter capsulatus; 0.857928991 0.880410886 0.878861574 0.934416021 0.886631938 0.875982261 0.931838327 0.88964137 0.934794977 0.873849707 0.904565339 0.894969286 0.905345226 0.877470252 0.815119546 0.820706843 0.88994543 0.903588043 238761788 alginase Yersinia kristensenii ATCC 33638 Carbon Cycling Carbon degradation Alginate superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia kristensenii; 1.077213845 1.01003919 1.016308858 1.039790237 0.988732042 0.983968725 0.978926938 1.009479256 1.008246828 0.995249115 0.994682932 1.036281559 0.987686715 0.981459612 0.964752055 0.982001956 0.995112343 1.01403545 308227260 amyA Oscillochloris trichoides DG6 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Oscillochloridaceae;genus:Oscillochloris;species:Oscillochloris trichoides; 1.06942518 1.07978109 1.020839151 1.086744166 0.995277994 1.088700841 1.026101856 1.050538475 1.065445761 1.056693162 1.025547922 1.058852513 1.016093371 0.991126612 1.003591763 1.024880941 1.105925327 1.077467009 407184587 b_lactamase Aeromonas media WS Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas media; 1.109568028 1.125726826 1.06698157 1.095553169 1.064183519 1.106302659 1.052756417 1.073316557 1.068977134 1.089585575 1.076449999 1.078658828 1.056175044 1.058371493 0.999264594 1.02486971 1.088200343 1.103466019 261193423 glucoamylase Ajellomyces dermatitidis SLH14081 Carbon Cycling Carbon degradation Starch superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces dermatitidis; 0.787707659 0.848201649 331698063 one_ring_12diox Pseudonocardia dioxanivorans CB1190 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Pseudonocardia;species:Pseudonocardia dioxanivorans; 0.869585722 0.859632631 0.859985113 0.828829917 0.866841108 0.814404939 0.902762012 0.880552268 0.849738334 0.883582267 0.834063055 0.831439719 0.795918636 0.854839333 296182727 amyA Bifidobacterium longum subsp. longum JDM301 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium longum; 1.404215075 1.35791771 1.403841252 1.415290462 1.354432465 1.373088971 1.34174722 1.358047005 1.364244671 1.366498756 1.348911136 1.376424338 1.332047587 1.349486584 1.295260307 1.332964241 1.35770985 1.339995527 378951352 pcpe Pseudomonas fluorescens F113 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 0.921388533 0.901252907 0.96893422 0.96773269 0.951739209 0.977781359 0.993090089 0.908565612 0.978050158 0.995796618 0.979396665 0.975691398 0.991494327 0.981916258 0.92877959 0.974287351 0.94824796 0.927297242 206592155 mdld Ralstonia solanacearum IPO1609 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 1.030477721 1.011453905 0.999755239 1.032574574 1.02702179 1.041476774 0.969846901 0.964646843 1.011112685 0.950997565 0.923357381 0.961592184 0.960989456 0.956044841 0.964796809 0.950250157 1.044169227 1.059289593 154155750 chnc Parvibaculum lavamentivorans DS-1 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhodobiaceae;genus:Parvibaculum;species:Parvibaculum lavamentivorans; 0.868161675 0.805613257 0.803862007 0.780378059 124258126 dehh109 Methylibium petroleiphilum PM1 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 1.039586863 0.954414012 0.873406415 0.943742539 0.873565777 0.886614715 0.873542258 0.924332645 0.925688161 0.933767945 0.807189573 0.899195621 0.840841156 0.890608971 0.911200748 0.934910338 0.948706302 291341791 vgb Streptomyces ghanaensis ATCC 14672 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces ghanaensis; 1.409019427 1.376635547 1.368843787 1.410130366 1.345856037 1.407017988 1.356276993 1.399014199 1.367845028 1.331981804 1.355074948 1.384749118 1.332537348 1.340200753 1.327906945 1.380428507 1.382964576 1.344389607 91782630 chitinase Burkholderia xenovorans LB400 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 0.874936986 0.878101588 0.893227588 0.893098645 0.856652343 0.873078274 0.867923389 0.87426612 0.942125247 0.894492693 0.904185112 0.838084555 0.863304155 0.84698335 0.854566966 0.876137082 0.891177992 21320168 pcag Acinetobacter lwoffii Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 1.09021615 1.036718798 1.0454439 1.070818956 1.0600403 1.039323298 0.984683409 1.029996771 1.049846966 1.011579888 1.009075331 1.026157763 1.020749374 0.973810175 0.992871117 0.997704664 1.084148551 1.082475432 403722988 tfda Gordonia rhizosphera NBRC 16068 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia rhizosphera; 1.016628118 1.003734602 1.008528803 0.992550183 1.012321083 1.037966938 0.950070758 0.958131613 0.978560109 0.980429782 0.951422899 0.946478659 0.98326389 0.930583784 0.927078605 0.930405193 1.000099132 1.038677609 60593149 dsrB uncultured prokaryote Sulfur sulfite reduction NA 1.184292835 1.179704872 1.139066821 1.147367282 1.131134118 1.160254846 1.120486641 1.103545418 1.149384807 1.151944927 1.118908843 1.134101478 1.105341052 1.130136981 1.098192662 1.127330476 1.171608232 1.180035993 357417852 arsc Pseudoxanthomonas spadix BD-a59 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Pseudoxanthomonas;species:Pseudoxanthomonas spadix; 0.91114158 0.846140607 0.918720177 0.923272654 0.895643306 0.91378119 0.906241204 0.885980509 0.919073922 0.877928124 0.867271319 0.897214162 0.889882776 372266296 amyA Alteromonas sp. S89 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Microbulbifer;species:Microbulbifer agarilyticus; 1.04199443 0.96345577 0.990557181 1.002448846 0.927657739 0.97283777 0.921930412 0.960977222 0.985874428 0.973718794 0.974626898 0.986617151 0.959140391 0.961662928 0.907365944 0.946246602 1.019986773 0.969789999 71082703 phta Rhodococcus coprophilus Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 1.053896431 1.071295726 1.006259737 1.02699574 1.00380868 1.036253823 0.890766383 0.965375436 1.052133417 1.045045373 1.049557559 1.020412034 0.99050299 1.034733168 0.909061746 0.96448945 1.038261916 1.063308557 77820046 nirs uncultured organism Nitrogen Denitrification NA 0.937281398 0.996063888 0.964714249 0.93866811 0.983476233 0.96636734 0.974903476 0.943317685 0.911945961 1.001772714 0.971643663 0.969705818 0.950588844 0.92833586 0.905380824 0.966908639 0.922999708 1.019916042 198284799 cysI Acidithiobacillus ferrooxidans ATCC 53993 Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus ferrooxidans; 1.009242833 0.95488404 0.946418949 1.051311452 0.93420213 0.993281368 0.950456176 1.012659355 1.013364055 0.956217873 0.983098565 0.962190705 0.934693955 0.955941135 0.957059739 0.951580262 1.009609025 0.949682889 238801080 B_lactamase_A Proteus mirabilis Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Proteus; 1.211544595 1.168581372 1.187035794 1.215604338 1.177432652 1.20631713 1.186838442 1.183714882 1.192971177 1.174435227 1.174412238 1.179982244 1.180364068 1.143493743 1.166202939 1.170748217 1.224231513 1.159782186 226317663 catb Deinococcus deserti VCD115 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus deserti; 0.963455996 1.008075131 0.924362052 0.952100952 0.932908288 0.98212705 0.912864459 0.891208725 0.938048577 0.979774697 0.913546839 0.950525261 0.888012311 0.954740169 0.918377012 0.943466005 0.983353293 0.99008792 375259768 pme Klebsiella oxytoca KCTC 1686 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella oxytoca; 1.229073654 1.242147293 1.201651931 1.254552998 1.218046532 1.296297911 1.232644622 1.211797404 1.230372879 1.232829025 1.226259169 1.248194512 1.219584371 1.21758989 1.21328075 1.247074955 1.24740815 1.23277595 340361105 ppk Neisseria macacae ATCC 33926 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria macacae; 1.24872518 1.224172051 1.215590625 1.260365881 1.187061074 1.252549076 1.1708839 1.219411783 1.215630895 1.19244802 1.185402618 1.211778859 1.177974082 1.162624286 1.157771838 1.160201441 1.274840669 1.209693809 115421687 bphd Bordetella avium 197N Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella avium; 0.815796392 0.812838831 0.834923804 0.801412613 0.818605503 0.781923555 0.81839901 0.836591342 111611199 vana Verminephrobacter eiseniae EF01-2 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 1.265865325 1.236854156 1.25074818 1.238966489 1.233074512 1.212443554 1.235467145 1.256018536 1.251780996 1.214772746 1.235825468 1.255915464 1.219349294 1.150548317 1.190276556 1.206046817 1.259519676 1.22000167 145205577 AcnA Chlorobium phaeovibrioides DSM 265 Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeovibrioides; 0.901231048 0.842655184 0.861707657 0.913241004 0.900030564 0.796471401 0.816933804 0.827152517 0.889958164 0.898992756 229588217 atzb Pseudomonas fluorescens SBW25 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 0.882571455 0.878965243 0.866938752 0.859453887 0.817120143 0.797460749 0.817246056 0.867395643 0.823082875 0.819844313 0.836354687 0.878722239 0.864716895 311219995 pgk Rhodomicrobium vannielii ATCC 17100 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Rhodomicrobium;species:Rhodomicrobium vannielii; 0.763601839 0.79461843 0.811940893 0.816202186 158138854 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.433291532 1.393500169 1.42372868 1.402189674 1.376679687 1.427694167 1.360205962 1.398647844 1.37602264 1.39666847 1.403742375 1.413490165 1.372972459 1.397246511 1.369268588 1.416126001 1.403962564 1.394813144 359765018 catechol Gordonia polyisoprenivorans NBRC 16320 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia polyisoprenivorans; 0.859222868 0.881831027 0.845087301 0.803928286 0.892118417 0.831776102 0.804614509 0.826907918 0.879158029 0.807443832 0.818059816 0.944151792 0.916616395 0.809296326 0.798688749 0.913730649 56680009 alkb Ruegeria pomeroyi DSS-3 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 0.918637512 0.879065511 0.859738179 0.933997282 0.867353913 0.955517987 0.908340149 0.898454121 0.883385136 0.810438482 0.891996202 0.889481597 0.877470713 0.853134486 0.894878634 0.873257931 260777262 endochitinase Vibrio coralliilyticus ATCC BAA-450 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio coralliilyticus; 0.785595241 0.822551692 0.802159187 0.859042029 0.822355158 0.82728802 0.834772077 0.79255676 0.800450298 0.83679355 0.786246931 0.844451865 297554690 amyA Ktedonobacter racemifer DSM 44963 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Chloroflexi;class:Ktedonobacteria;order:Ktedonobacterales;family:Ktedonobacteraceae;genus:Ktedonobacter;species:Ktedonobacter racemifer; 1.033397198 1.022539095 1.021838644 1.022148232 1.043794546 1.041694164 1.007517108 1.042531937 1.012191325 0.993406767 1.040691907 1.020018064 1.013508482 1.004319487 1.008287992 1.03233075 1.060543831 1.047327061 309395629 chitinase Stigmatella aurantiaca DW4/3-1 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 1.149923462 1.125773216 1.134289219 1.119615419 1.135685767 1.15376795 1.140783621 1.113558313 1.107678365 1.13229087 1.146613165 1.118673165 1.130729048 1.065208395 1.055756674 1.07977482 1.152739437 1.114160705 344317996 chitinase Streptomyces sp. SirexAA-E Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 0.870538974 0.906953875 0.854605653 0.889401513 0.848812782 0.858268752 0.823586942 0.873639118 0.832920727 0.879608052 0.878920342 0.83541435 0.820459599 0.888206283 339451272 amyA Leuconostoc lactis KCTC 3528 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Leuconostocaceae;genus:Leuconostoc;species:Leuconostoc lactis; 0.846678665 0.928022708 0.828407608 0.833972161 0.868928419 0.833597319 0.851753116 0.908148266 0.92403821 0.868337499 0.830624719 0.812917468 0.877091762 0.817302889 0.851961078 0.913653742 0.923687052 228469990 amyA Porphyromonas uenonis 60-3 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Porphyromonas;species:Porphyromonas uenonis; 0.814728651 0.837745536 0.80371798 0.851138874 0.786535542 0.876514244 258511582 catechol_b Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Alicyclobacillus;species:Alicyclobacillus acidocaldarius; 0.796815061 0.83648678 0.843534371 0.831612605 0.88205505 88776871 nosz Reinekea sp. MED297 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Reinekea;species:Reinekea blandensis; 1.036732356 0.986070578 1.024664027 1.010233565 0.988727422 0.993730501 0.988533386 1.004813796 1.010584358 0.991634251 1.01985976 1.007006164 0.98787031 0.996412396 0.965887555 0.970135201 1.014205158 1.001955626 159890721 amyA Herpetosiphon aurantiacus ATCC 23779 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Herpetosiphonales;family:Herpetosiphonaceae;genus:Herpetosiphon;species:Herpetosiphon aurantiacus; 1.000577704 0.966249319 0.995902844 0.980584851 0.969395448 0.945046301 0.986654272 0.933298655 0.959936268 0.966893197 0.972542777 0.977224346 0.897338015 0.910008296 0.894939183 0.906106595 0.905269337 0.955840243 404257357 nfsa_2 Gordonia namibiensis NBRC 108229 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia namibiensis; 0.938456362 0.967694899 0.982409192 0.950272779 0.979785567 1.017023369 0.976650117 0.878418778 0.945358657 0.965180443 0.982676868 0.920820987 0.972225489 0.982512778 0.941126787 0.935241155 0.977800657 0.975250832 77019723 arsc Rhodococcus erythropolis PR4 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 1.277849912 1.307443303 1.213676898 1.246916278 1.205204066 1.272759079 1.205614574 1.24735997 1.221042892 1.235066921 1.221227856 1.243267079 1.198390024 1.194419753 1.194414368 1.237745246 1.272828892 1.253815003 110592574 catb Acidovorax sp. JS42 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 0.867147537 0.896231536 0.834486181 0.929988478 0.824480835 0.849969807 0.824893779 0.804972159 0.816116043 0.903082809 0.810904744 0.890454694 0.865033272 0.818987262 0.870795406 0.874824519 0.875836386 392721067 poba Novosphingobium sp. Rr 2-17 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 0.825128895 0.846861261 0.816621222 0.83117699 0.802077011 0.817879977 0.776619932 0.890258088 0.870859628 34392410 one_ring_23diox Frateuria sp. ANA-18 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Frateuria; 0.817555239 0.808484225 0.771589408 0.793614313 0.818373097 0.859970779 332679664 xylanase Capnocytophaga sp. oral taxon 329 str. F0087 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Capnocytophaga;species:Capnocytophaga sp. oral taxon 329; 0.767065763 0.891806254 0.856360689 0.863106999 0.876938922 0.84439167 0.901017459 0.880724967 0.847675643 0.837930813 1.006754928 0.832347932 0.9184313 357013472 ccmL Paenibacillus elgii B69 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus elgii; 1.351796389 1.296797948 1.323169174 1.325538486 1.271023241 1.280304079 1.246562123 1.300382773 1.303864636 1.302460428 1.285430385 1.320462716 1.270969357 1.254766103 1.247600151 1.275139833 1.290970071 1.286185512 221739443 glucoamylase Agrobacterium vitis S4 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium vitis; 0.864947105 0.786315001 0.862001423 0.871854498 0.920599706 0.860364774 0.883871221 0.918600532 0.872742573 0.859237757 0.906497334 0.836483821 0.832697224 0.814715125 0.804063636 0.817376892 0.892671823 0.826085763 220711347 arylest Comamonas testosteroni KF-1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 1.102665638 0.83009874 0.893802886 0.920446035 0.920691491 0.875424586 0.914788889 0.947726117 0.872777038 0.9078651 0.910534191 0.89256302 0.825874096 0.819058588 0.832955201 0.849902164 0.867487867 0.875268923 325539859 catb Xanthomonas vesicatoria ATCC 35937 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas vesicatoria; 0.963174748 0.92734624 0.943376139 0.946798932 0.942736061 0.922534191 0.936292814 0.934162192 0.947683131 0.947370143 0.942816519 0.968313911 0.906609831 0.871041673 0.907363463 0.915220101 0.955304302 0.964122007 372471993 beta_agarase Opitutaceae bacterium TAV5 Carbon Cycling Carbon degradation Agar superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 0.879973987 0.881904644 0.857276406 0.902331602 0.827945654 0.866158031 0.867028299 0.905698582 0.882268143 0.89151835 0.836801483 0.877555306 0.81027715 0.87159361 0.849199382 0.853563665 0.86995245 0.903173506 16264857 nirb Sinorhizobium meliloti 1021 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium meliloti; 0.92251268 0.954069827 0.991901541 0.919049115 0.940547861 0.961508408 0.918730803 0.868198019 0.968268039 0.917169746 0.858321818 0.923985986 0.896440972 0.908156471 0.929713715 0.864969398 0.928592515 0.964970601 15722310 merg Plasmid pSB102 Metal Homeostasis Mercury Transport 0.817318397 0.798271409 0.82360992 0.814745353 0.898259266 0.857873695 0.894657894 0.850627522 0.822600424 0.832990157 0.829010875 0.868733311 0.810904329 0.828368941 0.808050046 0.811661794 0.891012113 292493826 exaa(moxf) Nitrosococcus halophilus Nc4 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Nitrosococcus;species:Nitrosococcus halophilus; 1.069475408 1.01699106 1.053274563 1.016964086 1.030626037 1.030811344 1.027954018 1.034818869 1.029414851 0.988591877 1.176927744 1.034449168 0.974801977 0.975260094 0.960432969 0.983304724 1.048949538 1.044976016 296392579 cutinase Segniliparus rotundus DSM 44985 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Segniliparaceae;genus:Segniliparus;species:Segniliparus rotundus; 1.068349134 1.136629886 1.152191143 1.066874989 1.093694215 1.102549112 0.975447672 1.03704731 1.064946497 0.999857318 1.146662226 1.067065628 0.983002906 1.01227573 0.96753977 0.995809586 1.084377988 1.050843851 116196714 phospholipase_D_fungi Chaetomium globosum CBS 148.51 Carbon Cycling Carbon degradation Phospholipids superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 1.052832355 1.066621512 1.046266531 1.069514781 1.051313435 1.056323085 1.057786528 1.03576312 1.050057061 1.042558349 1.11505395 1.095409861 1.01421649 1.030586035 0.987249362 1.007848084 1.024242898 1.0157396 384918343 ppx Citreicella sp. 357 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Citreicella; 1.151721789 1.211861846 1.156278478 1.114874437 1.115146976 1.157618734 1.14856243 1.147019587 1.067849696 1.084826773 1.127954995 1.12020987 1.056569842 1.064840814 1.013082312 1.04489328 1.15874693 1.119608227 167589245 nagg Burkholderia ubonensis Bu Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ubonensis; 0.859093236 0.901720225 0.854526704 0.879209477 0.848719523 0.877483288 0.813722368 0.877386233 0.876207536 0.878595244 0.888369844 0.857737383 0.847037964 0.849628481 0.852543973 0.86385972 0.896118045 0.877210048 357414790 urec Streptomyces flavogriseus ATCC 33331 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces flavogriseus; 1.040130064 1.029989678 1.035943752 1.060808205 1.040294888 1.025107884 1.028177298 1.011936195 1.030048554 1.038519994 1.054091634 1.073551894 0.974479681 1.000883683 0.990732806 1.019848716 1.03053335 1.005885358 373478804 xyla Singulisphaera acidiphila DSM 18658 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Singulisphaera;species:Singulisphaera acidiphila; 1.140929779 1.125519412 1.138865335 1.119806914 1.088729912 1.145741438 1.102895206 1.105701222 1.117831172 1.112443606 1.09431623 1.108987138 1.102980018 1.099147837 1.08682184 1.103643321 1.143896245 1.132819141 121707613 amyA Aspergillus clavatus NRRL 1 Carbon Cycling Carbon degradation Starch superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 0.78416517 0.816655768 0.804696131 0.755432954 0.862498221 0.775944606 0.837486563 0.86043583 160917615 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.058062016 1.054840567 1.083011637 1.062674755 1.057242677 1.102681602 1.060975023 1.055182537 1.049823235 1.085540746 1.060665942 1.067886864 1.003539612 1.023397674 0.988723756 1.016402588 1.043776507 1.016857521 373486914 ppx Holophaga foetida DSM 6591 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Acidobacteria;class:Holophagae;order:Holophagales;family:Holophagaceae;genus:Holophaga;species:Holophaga foetida; 1.096667253 1.074324782 1.107459524 1.109766362 1.026593892 1.096198333 1.060713466 1.089908881 1.101106345 1.098758163 1.078125334 1.097081821 1.061571499 1.077536384 1.173556723 1.088529017 1.124193226 1.089207914 359394074 ppx Halomonas boliviensis LC1 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas;species:Halomonas boliviensis; 1.046357447 1.088833866 1.008710345 1.040524795 1.069666803 1.051233534 1.014119714 1.01909522 1.029112567 0.99211966 0.968126136 0.985459494 1.026406824 1.022209382 0.950509601 0.967567072 1.051492088 1.075542366 2984080 mdh Aquifex aeolicus VF5 Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Aquificaceae;genus:Aquifex;species:Aquifex aeolicus; 0.951855322 0.840543217 0.809832268 0.878128418 0.969587175 0.865442678 0.830011266 0.87807586 0.96272817 0.990942634 0.89358474 294668526 ppx Neisseria elongata subsp. glycolytica ATCC 29315 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria elongata; 1.289344313 1.262352467 1.206366749 1.217409837 1.23062024 1.231001816 1.213987072 1.215031061 1.212906637 1.208433303 1.211871264 1.21302418 1.202467378 1.192095918 1.173845202 1.196702157 1.228744129 1.238501303 336179640 amyA Frankia symbiont of Datisca glomerata Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 1.006058999 1.046390965 0.948507027 0.987435941 0.960454974 1.001694232 0.909727994 0.919235304 0.953511513 0.99392535 0.92795452 0.95853318 0.937310114 0.967448621 0.876829523 0.938228207 0.990455639 1.017470587 149923448 ppx Plesiocystis pacifica SIR-1 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Nannocystaceae;genus:Plesiocystis;species:Plesiocystis pacifica; 1.006914956 0.979932432 0.963010449 0.979943154 1.003098751 0.992489348 0.950035371 0.967204414 0.969505128 0.975788958 0.944620574 0.97317355 1.010505507 0.933349011 0.957782844 0.968658467 1.01504133 0.989966905 407748426 phn Agrobacterium albertimagni AOL15 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium albertimagni; 1.007709273 1.028018173 0.941282144 1.015639426 0.977015222 1.032799816 0.963845039 0.996760057 0.961330752 0.992656408 0.958941399 0.994819503 0.941556931 0.970663707 0.968453354 0.968249141 1.018545815 1.01342198 353463634 pectinase (pectate_lyase) Xanthomonas oryzae pv. oryzicola BLS256 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas oryzae; 1.065027223 1.040482402 1.008755319 1.055906038 1.050259954 1.11657145 1.012700189 1.011060263 1.044586618 1.00493168 1.008356233 0.980936788 0.9955665 0.951207326 0.913363605 0.963632242 1.035267529 1.04634143 91777684 PRK Burkholderia xenovorans LB400 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 0.777957252 0.792003798 0.758988139 0.811709982 2854060 xylanase Bacillus sp. KK-1 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 0.896149689 0.878206051 0.930160554 0.927180526 0.901749669 0.929951079 1.018695019 0.909281801 0.911700525 0.920771162 0.901582029 0.872083085 0.893808179 0.884912007 0.850272847 0.878900143 0.92454802 0.907153214 56180234 arsc Idiomarina loihiensis L2TR Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Idiomarinaceae;genus:Idiomarina;species:Idiomarina loihiensis; 0.893295856 0.823058549 0.818744073 0.843429117 0.848883628 0.804638085 0.825663693 0.816628173 0.845466607 0.872793874 320549039 glucoamylase Haladaptatus paucihalophilus DX253 Carbon Cycling Carbon degradation Starch superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haladaptatus;species:Haladaptatus paucihalophilus; 0.996922358 1.042662975 0.994977955 0.955382847 1.011229191 1.020486875 0.953898749 0.971285715 0.971661898 1.039892514 1.003315404 1.005825511 0.99804998 1.027810865 0.965775323 1.02021301 0.990030282 1.023408953 384371764 urec uncultured bacterium Nitrogen Ammonification NA superkingdom:Bacteria; 0.994782648 0.987508556 0.998973709 1.035921584 1.032827104 1.038276619 1.015683161 1.00574568 1.001355633 1.034788138 1.028792568 1.024034337 1.029755292 0.957551665 0.999016979 1.028866238 1.021824281 0.967447548 333992554 terc Mycobacterium sp. JDM601 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 0.945495795 0.941047918 0.982553076 0.970494137 0.897170738 0.909026578 0.848131471 0.938472861 0.961422019 0.912679465 0.931796735 0.906160488 0.900337668 0.876633754 0.909190305 0.853216884 0.960501704 0.913436055 373894584 acetylglucosaminidase Mucilaginibacter paludis DSM 18603 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Mucilaginibacter;species:Mucilaginibacter paludis; 0.941107802 0.91501042 0.843540424 0.82544326 0.800855501 40746284 phospholipase_C_fungi Aspergillus nidulans FGSC A4 Carbon Cycling Carbon degradation Phospholipids superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 0.913318493 0.835215364 0.892401501 0.830301523 0.842676718 0.779318531 0.828127898 0.853642922 0.821165563 0.870456645 72119613 nagg Ralstonia eutropha JMP134 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 1.064553191 1.046959863 1.018494324 1.082805607 0.997960799 1.017041404 1.019728683 1.061656512 1.043610286 1.013133133 1.006696752 1.062140888 0.973053731 0.958159926 0.958155243 1.013202039 1.073830336 1.014700946 154253782 chnd Parvibaculum lavamentivorans DS-1 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhodobiaceae;genus:Parvibaculum;species:Parvibaculum lavamentivorans; 0.943043198 0.905169608 0.900062328 0.919694441 0.895210549 0.912509814 0.854554418 0.857302662 0.891294805 0.91053213 0.875251212 0.911170661 0.897696643 0.905166157 0.87492437 1.029935413 0.897152372 359837375 endoglucanase Actinoplanes sp. SE50/110 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes; 0.844605709 0.928928724 0.885705929 0.914875372 0.883704588 0.849534065 0.854138096 0.864630117 0.857905246 0.942895765 0.935921588 0.909856149 0.842126393 0.840024651 0.839141692 0.829216488 0.847778707 295668799 protease_serine_fungi Paracoccidioides brasiliensis Pb01 Carbon Cycling Carbon degradation protein superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;genus:Paracoccidioides;species:Paracoccidioides brasiliensis; 0.912548179 0.921514514 0.905102699 0.945726408 0.877101074 0.896789004 0.918779634 0.911258619 0.904178278 0.869513058 0.881145536 0.948011488 0.843229508 0.881033524 0.834312478 0.851879426 0.944632153 0.925587651 284989854 bend Geodermatophilus obscurus DSM 43160 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Geodermatophilaceae;genus:Geodermatophilus;species:Geodermatophilus obscurus; 1.447774326 1.431185072 1.435206512 1.448356502 1.431918479 1.459691241 1.414563163 1.432979188 1.433926032 1.423461097 1.434196034 1.443760315 1.397702594 1.357226974 1.372660302 1.394196617 1.442459442 1.403005838 19171194 phenol_oxidase Gaeumannomyces graminis var. tritici Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Gaeumannomyces;species:Gaeumannomyces graminis; 0.79376145 0.833262367 0.838692394 0.79567317 302490089 amyA Desulfovibrio fructosovorans JJ Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio fructosovorans; 1.249260867 1.216431616 1.220950328 1.243870022 1.196436655 1.236316574 1.189546722 1.205586444 1.202766662 1.192068349 1.193617831 1.196351113 1.19491118 1.158462564 1.173354645 1.184293804 1.278747355 1.186263931 43952 xyla Klebsiella pneumoniae Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella; 1.040189782 1.120758506 1.02746951 1.055554025 1.037668596 1.006508258 1.021649926 1.027277419 1.071127683 1.034841782 1.032301464 1.012419346 1.050739208 1.023258533 0.929197623 0.956846728 1.022092018 0.996339865 349575038 terc Neisseria shayeganii 871 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria shayeganii; 0.901246307 0.849034059 0.847162308 0.857349115 0.903062985 0.841922715 0.85632997 0.900350299 0.94689621 0.882782241 0.882814027 0.914979259 0.875261934 0.841090309 0.860270241 0.855607057 355336333 linb Pseudoxanthomonas spadix BD-a59 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Pseudoxanthomonas;species:Pseudoxanthomonas spadix; 0.901864002 0.867881528 0.842733115 0.819140938 0.809691361 0.792467868 0.845649674 0.82848171 220923135 FBP_aldolase Methylobacterium nodulans ORS 2060 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 0.950129137 0.99242557 0.907099901 0.996862713 0.940421263 0.913602697 0.94737692 0.922451792 0.954975809 0.90293766 0.88656368 0.986153267 0.854541815 0.835721453 0.809987136 0.896492518 0.942491161 0.985779248 90197718 terc Mycobacterium vanbaalenii PYR-1 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 1.208852142 1.246987949 1.16698543 1.197219947 1.183722852 1.211493305 1.134897637 1.172020586 1.180378847 1.202108807 1.149452497 1.180853912 1.16868674 1.162842079 1.119018786 1.148356079 1.198258151 1.209902272 126732561 SoxB Sagittula stellata E-37 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 0.806788262 0.79532538 256362819 alginase Catenulispora acidiphila DSM 44928 Carbon Cycling Carbon degradation Alginate superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 1.030541833 1.009364404 0.903275099 0.921704593 0.951195668 0.988591936 0.948565141 0.933303001 0.963942895 0.955891024 0.945653472 0.961438445 0.902780745 0.940648748 0.88434335 0.958718235 0.977531085 0.973153931 29465998 norb uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.091535151 1.033569559 1.066440593 1.099859151 1.061472946 1.066142778 1.036678543 1.05544091 1.083610141 1.024885494 1.041178715 1.061376007 1.010990674 1.006097317 1.020725709 1.02109103 1.101255036 1.030893956 151585353 glucoamylase Halorubrum lacusprofundi ATCC 49239 Carbon Cycling Carbon degradation Starch superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halorubrum;species:Halorubrum lacusprofundi; 1.188603113 1.142190628 1.176149899 1.141537286 1.160669461 1.215323299 1.205838998 1.15190092 1.155460842 1.153832279 1.177908222 1.153171672 1.14999005 1.168149762 1.092133524 1.128003891 1.191940373 1.160806982 15074404 cysI Sinorhizobium meliloti 1021 Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium meliloti; 1.231531087 1.225354293 1.212178793 1.216444631 1.200884951 1.261989259 1.221722441 1.230974264 1.198917328 1.249342574 1.229690158 1.217994081 1.183495253 1.198108022 1.139115791 1.15288687 1.218685754 1.229257815 388570098 dehh109 Hydrogenophaga sp. PBC Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Hydrogenophaga; 1.04808627 1.086264984 1.02071575 1.048246005 1.043847804 1.106539179 1.045766121 1.0542896 0.997691115 1.095513388 1.076285855 1.067813799 1.070902105 1.106410681 0.994937463 1.071384005 1.066702576 1.093462068 120593541 fccab Polaromonas naphthalenivorans CJ2 Sulfur Sulfide Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 1.106608625 1.102843097 1.14590939 1.114863466 1.102241531 1.144240092 1.174878585 1.077907833 1.067948207 1.150851924 1.146398137 1.15669998 1.123760573 1.117361867 1.072025972 1.0987294 1.095727394 1.094256043 116266952 mer Mycobacterium smegmatis str. MC2 155 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 1.212221234 1.15451706 1.161761291 1.17270951 1.148997869 1.168719092 1.131007536 1.193193521 1.172123292 1.153615178 1.136044508 1.18527371 1.106421562 1.104030839 1.104502997 1.18262721 1.138208399 1.186996166 406976581 nhh uncultured bacterium Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria; 0.935645368 0.80559779 0.965327583 0.893444516 0.891907434 0.824637754 0.907016686 0.85208266 0.903051654 0.870042039 0.839973814 0.941204232 0.87280615 388528078 ppx Tistrella mobilis KA081020-065 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Tistrella;species:Tistrella mobilis; 1.163096979 1.160082382 1.133724558 1.138032419 1.127517842 1.101889047 1.103811387 1.120983794 1.161596419 1.161736881 1.087841919 1.136513103 1.094288847 1.105107292 1.04154626 1.078823766 1.116936665 1.136701502 222441457 mer Labrenzia alexandrii DFL-11 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia alexandrii; 1.232193621 1.235490471 1.213770666 1.181218197 1.170430983 1.228651164 1.180908014 1.171480185 1.194014746 1.203411353 1.198124265 1.1931799 1.187075611 1.188963948 1.182256414 1.200559433 1.225503295 1.204233976 196477557 alkk Phenylobacterium zucineum HLK1 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Phenylobacterium;species:Phenylobacterium zucineum; 0.895923709 0.811506321 0.881071493 0.814428753 0.838179227 0.833206751 0.830060498 0.866165375 0.846543029 0.845334704 0.787961466 0.811296922 0.811673287 0.848909678 0.884840841 337746181 pme Paenibacillus mucilaginosus KNP414 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 0.963719649 0.964016127 0.941999556 0.985238908 0.888316479 0.943643855 0.919469834 0.95098048 0.966665975 0.978017249 0.907815348 0.955097513 0.877523397 0.900932971 0.841728606 0.899857237 0.952803218 0.978599997 4633563 nosz uncultured bacterium 696F Nitrogen Denitrification NA superkingdom:Bacteria; 0.924749085 0.906230619 0.918607091 0.937523632 0.946773389 0.992053139 0.912565366 0.976324334 0.944966228 0.967894211 0.953136435 0.926897532 0.897769723 0.936346258 0.817172112 0.875520112 0.952832806 0.963922695 111024950 phta Rhodococcus sp. RHA1 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 0.927685965 0.926865148 1.08731377 0.9642962 0.993114937 0.989426795 0.986729764 0.982092495 0.952322921 0.945184061 1.220136737 0.968596137 0.943050395 0.91625167 1.102102088 0.944972863 0.989967653 1.093347458 161485963 catb Corynebacterium efficiens YS-314 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium efficiens; 0.911656922 1.010446734 0.937338981 0.973190137 0.926118004 0.950206309 0.865655924 0.896459705 0.903729742 0.958626459 0.956439042 0.946160006 0.936511759 0.954077217 0.852154572 0.917488398 0.910459449 0.964710848 340360577 amyA Actinomyces sp. oral taxon 448 str. F0400 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 448; 0.886665855 0.9061745 0.888875794 0.862373103 0.867606745 0.871788051 0.831837867 0.863634844 0.884813026 0.917450446 0.830547654 0.900531345 0.82710932 0.846678593 0.836725311 0.920444282 0.901413524 257336860 FBPase Vibrio sp. Ex25 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 0.908179579 0.966284058 0.89723682 0.928731983 0.890781775 0.988385025 0.898014921 0.845876537 0.876506385 0.901750674 0.8904183 0.913884722 0.869723948 0.866018528 0.904151923 0.855109029 0.902407747 0.918190022 296013024 amyA Planctomyces limnophilus DSM 3776 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Planctomyces;species:Planctomyces limnophilus; 1.244036771 1.238582398 1.18814383 1.239713431 1.246054302 1.228363593 1.241021321 1.193461904 1.188275434 1.234256576 1.271068642 1.236309131 1.196676562 1.201973105 1.220845574 1.224421714 1.171652639 1.207883589 73535152 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.898886675 0.876729667 0.867931945 0.923672891 0.931304483 0.914777629 0.917335755 0.901141733 0.841385933 0.886951704 0.893802934 0.917379396 0.895954369 0.849498862 0.805257301 0.916873501 0.95558776 337744643 beta_agarase Paenibacillus mucilaginosus KNP414 Carbon Cycling Carbon degradation Agar superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 0.812906205 0.836103818 0.831066994 0.849965444 0.837945315 0.857894741 0.830572892 0.864648675 163738355 fthfs Phaeobacter gallaeciensis BS107 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 1.007691014 1.006349334 1.016704993 1.006455802 0.951580124 0.953891343 0.926630695 0.989220921 1.008051065 1.00885811 0.985010897 1.007940161 0.970657323 0.943579895 0.921246296 0.966436565 1.001302865 0.989668456 241773310 acetylglucosaminidase Asticcacaulis excentricus CB 48 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis excentricus; 0.787113633 0.825794252 0.806001035 0.832878068 373854794 heparinase Opitutaceae bacterium TAV5 Carbon Cycling Carbon degradation Heparin superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 1.043366455 1.048656285 1.016655538 0.998427661 1.055103745 1.067832703 1.010791748 0.997437374 0.983355414 1.053739529 1.029054476 1.048525489 1.003930843 1.010428779 0.985200408 1.031162288 1.0293856 1.042892898 301058535 nifh delta proteobacterium NaphS2 Nitrogen Nitrogen fixation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 0.782754671 0.816009923 0.836857412 0.802596491 0.819931447 0.876086715 0.808106966 0.827691684 407776461 proO Nitratireductor pacificus pht-3B Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Nitratireductor;species:Nitratireductor pacificus; 0.780956563 0.78744975 9106527 cysI Xylella fastidiosa 9a5c Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xylella;species:Xylella fastidiosa; 1.008419068 0.987765344 0.980263481 0.991115818 0.946755449 1.002881868 0.982725375 1.014754173 0.97996628 0.96733873 0.977029051 0.967275793 0.919846393 0.962033571 0.994650384 0.993176086 118715769 poba Burkholderia multivorans ATCC 17616 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 1.139298387 1.073795391 1.0828676 1.102554799 1.068921134 1.075190617 1.115090122 1.068793016 1.115938712 1.097944126 1.085622957 1.103976617 1.059891256 1.065165427 1.037854786 1.085716146 1.084665108 1.110847595 119956193 linb Mycobacterium vanbaalenii PYR-1 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 1.247281297 1.245936935 1.216407511 1.235327391 1.217387234 1.273097807 1.195040385 1.219108145 1.216352303 1.217033108 1.221572588 1.218753751 1.202341953 1.214397142 1.189917464 1.22075214 1.293985559 1.229264214 91788852 poba Polaromonas sp. JS666 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 0.818478901 0.851228919 0.8119557 0.839466461 0.854083658 0.88038079 0.893150321 0.898076376 0.890381628 0.875731822 0.849611556 0.857243498 0.879677439 0.824917579 0.82565278 346421718 cymc Pseudomonas sp. 19-rlim Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.756846719 0.82040099 323526269 PRI Burkholderia sp. CCGE1001 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 0.83686443 0.856808567 0.859952291 0.849239997 0.840593439 0.803085219 0.84326347 0.831797996 0.815681306 0.830627565 0.84320677 359344865 B_lactamase_A Pseudovibrio sp. FO-BEG1 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 0.800061369 0.884696004 0.804571857 0.836323737 0.834021546 0.819016781 0.838813769 0.864976325 0.810768443 0.827487039 0.876001016 0.848264126 0.833079273 0.84949596 388589458 poba Microvirga sp. WSM3557 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Microvirga; 0.930405694 0.880248041 0.860517562 0.934588566 1.056354224 0.882074735 0.821205887 0.796345486 0.820695043 0.874736554 0.841966416 0.903988894 0.846180791 0.81459467 0.821258596 1.003989477 0.875350946 0.847001513 223039931 AcnA Campylobacter rectus RM3267 Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter rectus; 0.926218074 0.923227768 0.864022231 0.925509835 0.890355572 0.86704141 0.866400516 0.892336658 0.953594203 0.890281176 0.842596027 0.894993986 0.78934636 0.829493184 0.828819791 0.928922536 0.937605986 70930932 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.877985003 0.854480583 0.864723211 0.892830955 0.869530077 0.809351381 0.865522498 0.902776064 0.870239529 0.850998336 0.80548738 0.918796545 0.85067462 0.851618841 384431142 catechol_b Thermus thermophilus SG0.5JP17-16 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus;species:Thermus thermophilus; 0.761432255 0.868106931 0.830839671 0.820814363 310796063 lactase_fungi Glomerella graminicola M1.001 Carbon Cycling Carbon degradation Lactose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Glomerellaceae;genus:Glomerella;species:Glomerella graminicola; 1.056946231 1.014655452 1.01822123 1.045687444 1.012152565 1.065680997 1.007466804 1.03485217 1.052521184 1.047510782 1.043088593 1.048675918 1.024537594 1.057345917 1.018494173 1.003224534 1.036505493 1.015220504 119374419 pgk Paracoccus denitrificans PD1222 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 0.968153647 0.988425026 0.928237551 0.967101463 0.930035121 0.985391168 0.877587983 0.903484922 0.958549968 0.965440478 0.945803084 0.94570881 0.93279977 0.91196234 0.862878533 0.901223095 0.973237097 0.979696545 171677977 phospholipase_D_fungi Podospora anserina S mat+ Carbon Cycling Carbon degradation Phospholipids superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Lasiosphaeriaceae;genus:Podospora;species:Podospora anserina; 0.78886266 0.818100569 0.825795247 0.82867895 0.868377637 0.826599719 0.805414848 0.858213072 0.812781095 0.798441512 0.823026651 0.877297949 0.827527063 0.83035286 0.834076625 302562175 amyA Streptomyces griseoflavus Tu4000 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseoflavus; 1.034490368 1.063274742 1.004773505 1.034831593 1.063080196 1.05925903 1.030532014 1.050038631 1.020193582 1.033398591 1.023674153 1.016768277 1.023584929 1.022461183 1.005803709 1.055754541 1.027214965 1.021574562 7188931 pmoa Methylosinus trichosporium Carbon Cycling Methane Methane oxidation superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylocystaceae;genus:Methylosinus; 1.140794336 1.092549871 1.128706397 1.137589374 1.126397179 1.109627056 1.075343123 1.114965236 1.114801878 1.113677912 1.125938078 1.142544987 1.094852057 1.081215447 1.065651062 1.07704394 1.112109972 1.116395197 94984793 acetylglucosaminidase Deinococcus geothermalis DSM 11300 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus geothermalis; 0.98366353 1.057357449 0.995106772 0.99675318 1.017280622 1.025583409 0.991093341 0.923581127 0.932346201 1.057025751 1.01465933 1.020840653 1.010560384 1.027925739 0.980572387 0.991794241 0.98648794 1.078340587 119872734 por_DiC4HB Pyrobaculum islandicum DSM 4184 Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum islandicum; 0.811019904 0.811405394 0.826828421 0.792099551 317474364 ara Bacteroides eggerthii 1_2_48FAA Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides eggerthii; 1.062237289 1.086215168 1.058088797 1.097023472 1.094846443 1.004972612 1.038131251 1.055688335 1.070567763 1.038819959 1.012823591 1.059101063 1.024079587 1.007785518 0.992438494 0.977208261 1.047211285 1.077132393 312133859 amyA Bifidobacterium longum subsp. longum BBMN68 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium longum; 0.929660777 0.847854569 0.924995878 0.92759521 0.922266346 0.846512079 0.934030983 0.960448128 0.905622778 0.83207608 0.843826087 0.842977997 0.841176385 0.891631219 92119207 FBP_aldolase Nitrobacter hamburgensis X14 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter hamburgensis; 1.026191649 0.929769114 0.940464603 0.899183892 0.911209954 0.917318586 0.842763737 0.875893803 0.904813981 0.865036709 0.97669422 0.859212651 0.831900406 0.890367864 0.821569778 0.834689923 0.88317447 0.868850954 374703189 PRI Pseudomonas sp. S9 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 1.003963262 1.057159457 1.009768822 1.004538358 0.985362068 1.038048766 0.970099927 0.978440182 0.990854002 1.054614204 1.019522284 1.027888852 1.024201739 0.97646449 0.98661103 1.012286277 1.02576857 1.035989703 237500701 CsoS1_CcmK Tolumonas auensis DSM 9187 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Tolumonas;species:Tolumonas auensis; 0.800610097 0.810132993 1.005185597 1.020179013 0.889221673 0.870644821 0.844436368 0.946947957 0.837405439 1.129647356 0.936679699 74317490 mer Thiobacillus denitrificans ATCC 25259 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus;species:Thiobacillus denitrificans; 0.988903655 0.945141623 0.953691474 0.993926762 0.94927363 0.970653182 0.978007751 0.990378069 0.980164299 0.934311398 0.937373489 0.971227337 0.947696545 0.937921694 0.950679228 0.991047933 0.979678711 0.939931336 330688047 aoxb uncultured bacterium Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 0.998885026 0.920834681 0.997322749 0.923296989 0.910215874 0.845962714 0.856363496 0.906107373 0.976734164 0.956123701 0.946809971 0.915688081 0.922276287 0.92488787 0.923947406 0.852052903 0.998470423 0.973395795 164455874 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 1.317452961 1.290540987 1.272502628 1.282509175 1.277540596 1.301225256 1.264058335 1.285974751 1.267948165 1.27573821 1.259258214 1.294067148 1.258975563 1.25129037 1.25545646 1.288703273 1.303440639 1.273456467 398803397 poba Polaromonas sp. CF318 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 0.839758652 0.862872833 0.837317626 0.878841239 0.833653417 0.853588522 0.833662198 0.811867572 0.868852826 0.91875312 0.828119579 0.842253784 0.841590422 0.857635239 0.846929299 0.832079881 0.846388842 0.87627538 334891315 ppx Salinisphaera shabanensis E1L3A Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Salinisphaerales;family:Salinisphaeraceae;genus:Salinisphaera;species:Salinisphaera shabanensis; 1.178037412 1.17516038 1.201654522 1.197716847 1.168870911 1.167548105 1.15591245 1.179468172 1.17035309 1.143200597 1.163853689 1.188405163 1.146284649 1.125859745 1.185159187 1.154493118 1.169829109 1.143888532 308226467 terc Oscillochloris trichoides DG6 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Oscillochloridaceae;genus:Oscillochloris;species:Oscillochloris trichoides; 1.078574591 1.062931236 1.056058393 1.079518091 1.050907173 1.066191806 1.043708463 1.031287004 1.053739989 1.038200691 1.032439104 1.069159782 1.031843096 1.031735591 1.009282351 1.019626517 1.077924603 1.043704692 372450953 chitinase Bacillus sp. 1NLA3E Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 0.825143767 0.813250157 0.80068442 0.816645377 0.86697265 0.79841492 0.808578117 0.779115307 118377803 actin_ciliophora Tetrahymena thermophila Other Phylogenetic NA superkingdom:Eukaryota;class:Oligohymenophorea;order:Hymenostomatida;family:Tetrahymenidae;genus:Tetrahymena; 0.831490371 0.813261022 0.846769967 0.829791445 0.859411414 0.874598403 0.828392084 0.83396113 0.852503412 0.871541684 0.808694128 0.815029069 0.876378133 0.773293804 0.821408432 0.832128479 37924797 nifh uncultured nitrogen-fixing bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.857410959 0.871014505 0.904423261 0.838110145 0.821400512 0.82449847 0.826002895 0.819707816 0.832763524 0.824310005 0.795752412 0.821867371 0.834687924 0.861491247 337748860 RgaE Paenibacillus mucilaginosus KNP414 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 0.809328636 0.793522042 0.80685855 0.830696879 0.796372363 0.915614473 0.809418856 0.804489409 0.828581062 154508846 terc Actinomyces odontolyticus ATCC 17982 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces odontolyticus; 0.863932981 0.855969608 0.806404743 0.815443071 0.827737669 0.779308609 0.840519567 0.835213471 0.920586262 0.828670997 0.877592599 0.823062626 0.780539872 0.824421655 383107755 amyA Spirochaeta africana DSM 8902 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Spirochaeta;species:Spirochaeta africana; 1.226576832 1.197986862 1.230139591 1.25262398 1.242233004 1.226279804 1.231127776 1.247960694 1.25328037 1.189859029 1.212405041 1.238904352 1.199394078 1.140394387 1.212548752 1.209246445 1.234344534 1.197206014 390618153 xylj Mycobacterium chubuense NBB4 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium chubuense; 1.058495654 1.02087872 1.199370947 1.014963013 0.975936342 0.936731453 0.933340499 0.956093201 1.082480611 0.981043396 0.986236346 1.008901769 0.954707247 0.908097742 0.8584747 0.95732964 0.982873687 0.92908644 121609738 catechol_b Verminephrobacter eiseniae EF01-2 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 0.783271412 0.807722767 149912870 dmdA Roseobacter sp. AzwK-3b Sulfur DMSP degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 0.958171571 1.100317981 0.951569553 1.059488304 0.983798906 0.914177954 0.999004633 0.939006864 0.950582616 0.936281206 0.927396508 1.006868755 0.925587593 0.942413757 0.901955194 0.945777261 0.954357171 0.959328141 148499934 bphd Sphingomonas wittichii RW1 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 1.082053831 1.123509829 1.026198522 1.097771878 1.049525214 1.07693138 1.033560346 1.058493726 1.052400703 1.076786747 1.041303558 1.058440505 1.043078552 1.061117691 1.018976279 1.045988618 1.076244015 1.085835327 149925938 endoglucanase Limnobacter sp. MED105 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Limnobacter; 0.840309643 0.891739194 171464947 mer Dyella sp. Is-D136 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Dyella; 1.048120077 1.030525358 0.98289194 1.046898825 0.902545745 1.006146728 0.941053874 1.009424065 1.031306051 0.998905305 0.967980923 0.958552798 0.978673054 0.991329673 0.919565727 0.980411836 1.051295839 1.039153058 297556347 cysI Ktedonobacter racemifer DSM 44963 Sulfur Other NA superkingdom:Bacteria;phylum:Chloroflexi;class:Ktedonobacteria;order:Ktedonobacterales;family:Ktedonobacteraceae;genus:Ktedonobacter;species:Ktedonobacter racemifer; 0.985462926 0.958748296 0.890722503 0.994932812 0.970247756 0.962957944 0.900000726 0.936791379 0.949018051 0.938030715 0.896659342 0.974257037 0.914477659 0.931917286 0.93001908 0.939774861 0.982637835 0.91592654 379010258 gdh Acetobacterium woodii DSM 1030 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Eubacteriaceae;genus:Acetobacterium;species:Acetobacterium woodii; 0.933725417 0.892806354 0.900712187 0.924175582 0.930348272 0.90880991 0.91925472 0.905806643 0.892853761 0.87724957 0.900617253 0.900656208 0.87838066 0.873385766 0.859275746 0.869781139 0.917515328 347816720 gdh Candidatus Glomeribacter gigasporarum BEG34 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Candidatus Glomeribacter;species:Candidatus Glomeribacter gigasporarum; 1.359517587 1.326939591 1.327779783 1.324561426 1.29518444 1.328552497 1.29731252 1.324830912 1.327322637 1.315917059 1.309287142 1.317257785 1.302803658 1.275885695 1.308815708 1.307045686 1.338409435 1.310834259 345870310 sqr Thiorhodococcus drewsii AZ1 Sulfur Sulfide Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiorhodococcus;species:Thiorhodococcus drewsii; 0.881481951 0.898497081 0.831775526 0.922920788 0.882709308 0.860336466 0.815764564 0.917508724 0.889459308 0.839814307 0.88446336 0.868204306 0.941396113 258591880 arsc Candidatus Methylomirabilis oxyfera Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;genus:Candidatus Methylomirabilis; 0.926321463 0.908616768 0.930245691 0.802647311 0.882225293 0.824833838 0.821908712 0.897433889 0.915157031 0.827549613 0.852355224 0.821073394 0.879821649 0.831273995 0.891444844 0.923080058 261282381 acetylglucosaminidase Geobacillus sp. Y412MC10 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 0.926781591 0.920572381 0.948329514 0.963607495 0.905716404 1.029449106 0.905421636 0.91839012 0.920262406 0.96819291 0.929424145 0.918807021 0.890163318 0.896675772 0.860949533 0.839333767 0.943522431 0.961016356 115516566 ben_bcla Rhodopseudomonas palustris BisA53 virulence NA NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 1.184999549 1.151989859 1.152502396 1.162072863 1.129016387 1.184796227 1.10786608 1.120655421 1.14455444 1.140490522 1.124657828 1.121984761 1.122981515 1.093219371 1.075656413 1.101651484 1.189439214 1.152784303 83316708 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.871803809 0.880206584 0.82418108 0.910848382 0.943699647 0.81237514 0.933256865 0.882637595 0.904139676 0.893774262 0.909189919 0.862798057 0.844004648 0.888445947 0.872612464 0.836155847 0.869959406 0.891903989 325110015 amyA Planctomyces brasiliensis DSM 5305 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Planctomyces;species:Planctomyces brasiliensis; 0.853380287 0.911484021 0.845706044 0.886599599 0.88225973 0.889420932 0.8105847 0.784966613 0.903721119 0.830218429 0.821521902 0.860832122 0.801839019 0.857141842 0.867849594 0.829175343 0.871685135 391879758 amyA Parascardovia denticolens IPLA 20019 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Parascardovia;species:Parascardovia denticolens; 0.997476524 1.008449377 0.955107691 1.023700288 0.982136112 0.961661555 0.995008686 0.986236354 0.969835244 0.953868386 0.948616193 1.009318954 0.904301203 0.905854215 0.821192325 0.899552351 0.975421088 1.03683132 334887631 cmci Salinisphaera shabanensis E1L3A Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Salinisphaerales;family:Salinisphaeraceae;genus:Salinisphaera;species:Salinisphaera shabanensis; 1.267583682 1.284652064 1.264530398 1.28844537 1.285669318 1.272496976 1.262864912 1.294167275 1.234730275 1.241955472 1.258932149 1.292809528 1.236595707 1.243756512 1.258873604 1.247946023 1.263949234 1.225673142 374574058 fccab Bradyrhizobium sp. WSM471 Sulfur Sulfide Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.780009054 0.904543411 0.849655927 0.878308811 0.877828284 0.845270055 0.80228119 0.870322917 0.841501898 0.83629154 0.85306933 0.829331918 0.876151744 261854727 metc Halothiobacillus neapolitanus c2 Metal Homeostasis Mercury Detoxification 1.022968542 1.008352394 0.973033576 1.024436564 0.972236735 0.984659801 0.998261529 1.008986526 1.011671719 1.009121133 0.965193108 1.034400439 0.968781849 0.968671174 0.90644219 0.955502379 1.048868748 0.990725401 327548246 cysI Oxalobacteraceae bacterium IMCC9480 Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae; 0.852632989 0.788034987 0.86447698 0.846365923 0.837153335 0.860024068 0.863907654 0.832679861 0.847746751 0.811633807 0.791611938 0.891413507 0.905871953 157285559 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.03937113 0.981005533 0.993814205 1.01973648 0.998759947 0.963314813 0.939908381 1.014018311 1.022199756 0.994056992 0.994833913 1.053602248 1.007155963 0.973294641 0.953531122 1.002426629 1.009955631 0.98326645 291536054 ppx Roseburia intestinalis M50/1 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Roseburia;species:Roseburia intestinalis; 0.881159648 0.850170806 0.895946371 0.791336772 0.862535481 0.88859682 0.812382466 0.793801039 0.821439679 0.83673168 0.87764011 76057029 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.08180436 0.900813331 0.921204739 0.913337571 0.943792901 0.943879772 0.897611399 0.874816386 0.931432794 0.951790184 0.906508203 0.890619278 0.919610856 0.934281386 0.914313115 0.926689939 0.912291998 0.956236762 88807731 ccmL Synechococcus sp. WH 7805 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 1.076152005 1.078295341 1.030447351 1.071172372 1.014320655 1.082744199 1.00903184 1.058770771 1.015630084 1.022967085 1.017692069 1.013018159 1.012241918 1.021327364 0.996709923 1.045090218 1.088403848 1.066670725 24349751 acetylglucosaminidase Shewanella oneidensis MR-1 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella oneidensis; 0.858312214 0.889628489 0.944846769 0.877433352 0.872623282 0.884965821 0.876063296 0.862481737 0.89645795 0.876040951 0.867207501 0.842035644 0.862526174 0.840104511 0.801576361 0.855635807 0.86366163 0.894659327 151359553 xylanase Kineococcus radiotolerans SRS30216 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Kineosporiaceae;genus:Kineococcus;species:Kineococcus radiotolerans; 1.267606094 1.24956369 1.227353257 1.217997587 1.219078475 1.229728188 1.22324295 1.189751888 1.236248855 1.217860865 1.214411975 1.221879843 1.178481712 1.17607118 1.169284718 1.142521278 1.254391459 1.249929721 296426557 phenol_oxidase uncultured bacterium Carbon Cycling Carbon degradation Lignin superkingdom:Bacteria; 1.062606864 1.048296094 0.977392446 1.056474073 0.988271152 1.009120619 1.032235172 0.964498805 0.959321881 1.023062284 1.069783913 1.054854675 0.965677672 0.963643798 0.926445172 1.007827466 1.027433402 1.045063101 300390277 fthfs uncultured bacterium Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria; 1.0172281 1.026484198 1.019518178 1.047189524 0.983265225 0.993771457 0.934248592 1.015392975 1.035423216 0.993473973 0.985787913 0.994315635 0.964574791 0.994471281 0.938796346 0.97521904 1.029350166 1.042490765 56419944 cysJ Geobacillus kaustophilus HTA426 Sulfur Reduction NA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus;species:Geobacillus kaustophilus; 0.937921041 0.946253428 0.91125125 0.964152082 0.943564257 0.958138019 0.978206418 0.953458371 0.934001497 0.932041703 0.911841303 0.949184288 0.888523204 0.919529828 0.810670075 0.937026214 0.94325113 0.962859842 149606 xyla Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus; 0.955541136 0.846482435 73749295 rd Dehalococcoides sp. CBDB1 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 0.779512654 0.81680216 0.768718881 0.818596787 0.813667398 0.803642699 0.823460911 0.78917189 0.819500936 117188513 nitrate_reductase uncultured eukaryote Nitrogen N Assimilation NA superkingdom:Eukaryota; 0.785968207 0.807525425 0.815619549 0.916754365 0.853688094 0.79336368 0.822356636 0.822490427 0.850739605 0.812745232 0.840232427 73762919 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.974431617 0.947335691 0.993444653 1.020758581 0.99585213 0.97642212 0.97956378 1.012389164 1.005135346 0.971356774 0.979096448 0.984661306 0.945508632 0.890363803 0.918839531 0.924568054 0.976339454 0.974740049 335420057 atzb Salinisphaera shabanensis E1L3A Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Salinisphaerales;family:Salinisphaeraceae;genus:Salinisphaera;species:Salinisphaera shabanensis; 0.767651228 0.781337673 0.783530364 0.804069891 0.759959016 95109234 cysJ Pseudomonas entomophila L48 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas entomophila; 0.890456947 0.861281871 0.914058125 0.87228948 0.83781237 0.875044916 0.832588016 0.879703406 0.87142838 0.875861605 0.880932065 0.844519811 0.83571143 0.869798192 0.869386754 0.88740353 0.870933249 302407215 pel_Cdeg Verticillium albo-atrum VaMs.102 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticilium;species:Verticillium albo-atrum; 1.786393401 1.721301375 1.718696558 1.708247247 1.688622555 1.737734511 1.689379723 1.716330947 1.696978675 1.696073882 1.702217152 1.707256416 1.652181324 1.661139331 1.690406306 1.696710616 1.71909481 1.686905601 39933746 ben_bcla Rhodopseudomonas palustris CGA009 virulence NA NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 0.849078227 0.872608328 0.892880538 0.90573857 0.82991542 0.851630772 0.886138447 0.914815413 0.792926742 0.807844403 0.827284771 0.850877469 0.873462193 46205208 mer Magnetospirillum magnetotacticum MS-1 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum magnetotacticum; 1.017935221 1.009411295 0.95949166 1.00536872 0.957539427 1.014581823 0.949458166 0.973413517 0.997330457 0.992989521 0.968299156 0.98970856 0.943941974 0.958495025 0.92735062 0.965787121 0.996168868 1.01528747 120595478 ben_bcla Polaromonas naphthalenivorans CJ2 virulence NA NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 0.893206512 0.897844227 0.835864448 0.877236842 0.856034944 0.849625531 0.838618102 0.849960235 0.880088098 0.863056326 0.865316068 0.876863618 0.91303036 0.83264959 0.85026414 0.823654893 0.924478789 0.957598057 373941909 arxa Ectothiorhodospira sp. PHS-1 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Ectothiorhodospira; 0.970557004 1.056225713 0.971723883 0.968695741 1.01777345 0.962841863 0.970275253 0.965275381 0.961369512 0.960170473 1.006773482 0.949333908 0.938555564 0.886002255 0.871510064 0.87933444 0.954637394 1.015684527 331694637 catechol Pseudonocardia dioxanivorans CB1190 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Pseudonocardia;species:Pseudonocardia dioxanivorans; 1.262213213 1.227018061 1.239165145 1.239149144 1.206299174 1.251378734 1.190474781 1.237152187 1.226636661 1.238366872 1.218138173 1.244876888 1.217513585 1.216530527 1.201885067 1.232106223 1.247618934 1.244674686 29466088 norb uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.875756662 0.874353122 0.849489193 0.829306405 0.870090421 0.848010768 0.816697072 0.821487038 0.841067804 0.874330775 0.862968213 0.842995567 0.790757906 0.819810427 0.815247854 0.854449421 0.861032314 332665264 xyla Haliscomenobacter hydrossis DSM 1100 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Saprospiraceae;genus:Haliscomenobacter;species:Haliscomenobacter hydrossis; 0.989833907 0.881525347 0.922568353 0.949999525 0.876378154 0.974043681 0.856022448 0.884483365 0.8963749 0.902950328 0.88079394 0.917448196 0.837202554 0.860206188 0.803193358 0.84123042 0.912220387 0.878841539 375142284 amyA Mycobacterium rhodesiae NBB3 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 1.058813666 1.030641767 0.993090566 1.016153857 1.012390384 1.030290825 1.025207753 0.9996095 1.032626577 1.017817282 0.979058801 0.992066954 0.996346282 1.015441786 0.989284543 1.012664817 1.019311218 1.048609078 33863473 CsoS2 Prochlorococcus marinus str. MIT 9313 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Cyanobacteria;order:Prochlorales;family:Prochlorococcaceae;genus:Prochlorococcus;species:Prochlorococcus marinus; 0.83537593 0.811874714 0.814134039 0.824744988 0.802090231 0.827196136 0.838153049 0.809525657 0.817128489 160941399 xyla Clostridium bolteae ATCC BAA-613 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium bolteae; 0.842666887 0.933687654 0.805517864 0.865906998 0.818430938 0.855738696 0.805976705 0.851776835 0.850255177 0.853991111 0.82459937 0.794890878 0.857034596 0.826957758 0.880602421 296091697 mannanase Thermobispora bispora DSM 43833 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Thermobispora;species:Thermobispora bispora; 1.114188229 1.081873942 1.034745995 1.030550831 1.051797003 1.044483046 1.036831344 1.055912653 1.108134668 1.033473502 1.072737003 1.085127767 1.008295753 0.94270033 0.929515693 1.102391375 1.055476925 1.074865214 269791171 terc Thermobaculum terrenum ATCC BAA-798 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;genus:Thermobaculum;species:Thermobaculum terrenum; 0.818014428 0.811164336 0.822561816 0.824734941 0.823396185 0.888448448 386847932 mannanase Actinoplanes sp. SE50/110 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes; 1.305856143 1.312221855 1.290948031 1.273635284 1.287816372 1.308793447 1.273259798 1.27063298 1.299417762 1.28157089 1.296491579 1.281857738 1.266645168 1.237115648 1.219679688 1.239949363 1.302421028 1.278741042 170657632 fcba Methylobacterium radiotolerans JCM 2831 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium radiotolerans; 0.802590922 0.808762718 0.77090218 0.815652653 0.794122123 0.847644799 0.789914296 146350520 exoglucanase Pleurotus sp. 'Florida' Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Pleurotaceae;genus:Pleurotus;species:Pleurotus pulmonarius; 0.897800932 0.852162661 0.858753261 0.897842703 0.881349165 0.896873459 0.891118338 0.91684362 0.853195622 0.895331102 0.825011531 0.849786405 0.836854381 1.163988748 0.812831362 0.868241965 0.905230342 126728735 FBP_aldolase Sagittula stellata E-37 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 0.843842765 0.829542205 0.869997933 0.797618449 0.855755474 0.848580718 0.806980665 0.774184351 0.858146191 255040402 APS_AprB Desulfopila aestuarii Sulfur adenylylsulfate reductase NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobulbaceae;genus:Desulfopila; 0.95475774 0.927816544 0.955590256 1.020930959 0.967181267 0.975263042 1.027614292 0.898482309 0.920142122 0.958911042 0.912673191 1.076755778 0.914888366 0.957648129 0.899024297 0.952555031 0.922432687 0.971924897 298551209 amyA Paenibacillus sp. Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 0.984020954 0.994678013 0.948828483 0.937572572 0.919210277 0.946788333 0.926859996 0.925363121 0.937843339 0.96951568 0.957377027 0.931373054 0.933021212 0.95917731 0.918497218 0.894204363 0.982210047 0.970161325 271967869 vana Streptosporangium roseum DSM 43021 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 0.801953416 0.850688547 0.853625529 0.816244762 0.825497978 0.811761819 0.837446933 0.874269652 317474442 amyA Bacteroides eggerthii 1_2_48FAA Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides eggerthii; 0.788790213 0.799273793 0.773100175 0.796684258 177842616 chitinase Opitutus terrae PB90-1 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 0.957799406 0.931266014 0.962179803 0.940082969 0.892147022 0.917548038 0.888997326 0.913916004 0.960517094 0.959967246 0.93563852 0.926873872 0.915799807 0.925799936 0.886146943 0.928103889 0.983156514 0.915920759 119479243 pel_Cdeg Neosartorya fischeri NRRL 181 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 1.013042027 1.039886515 0.982597557 0.997094168 1.032767281 1.04475368 0.985181375 0.947596818 0.994180361 0.943357627 1.038968445 0.976802017 0.952558131 0.947160885 0.917607694 0.96159586 1.00786352 1.020075239 158422521 fthfs Azorhizobium caulinodans ORS 571 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Azorhizobium;species:Azorhizobium caulinodans; 1.196189424 1.251837883 1.160148222 1.183983271 1.192319301 1.246118072 1.143913175 1.151247408 1.143136889 1.224204547 1.189171625 1.200213602 1.177487124 1.201769148 1.132763297 1.186831297 1.185911819 1.238946466 114767113 tktA Pelagibaca bermudensis HTCC2601 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pelagibaca;species:Pelagibaca bermudensis; 0.899005659 0.870144454 0.835919594 0.864407724 0.812758038 0.802696972 0.845162573 0.806607725 0.82242916 0.837749435 0.801571804 0.841534316 0.866535052 165880027 exoglucanase uncultured fungus Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi; 0.873633812 0.894856027 0.946736098 0.924582872 0.928375869 0.932575494 0.876143127 0.849411654 0.920421823 0.892502726 0.868919543 0.912206722 0.925790545 0.882439371 0.951368333 0.933726135 0.938179854 0.88355855 254430590 CsoS2 Cyanobium sp. PCC 7001 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanobium; 1.111260509 1.11676455 1.072023759 1.086356476 1.09528594 1.095314501 1.099526073 1.090592874 1.094746491 1.089937455 1.037304419 1.074657462 1.017142908 1.054708979 0.943021708 1.067369645 1.062727662 1.057296343 315092073 amyA Propionibacterium acnes HL110PA4 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium;species:Propionibacterium acnes; 0.893271676 0.923634622 0.892217978 0.894206128 0.853531601 1.007694481 0.861187871 0.873252281 0.913481467 0.908918245 0.978974608 0.816437954 0.855651196 0.927108412 0.830569686 0.876435522 0.872127783 0.894396496 348169103 amyA Saccharopolyspora spinosa NRRL 18395 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora spinosa; 0.891976909 0.910983628 0.836958924 0.894092646 0.845297667 0.899050641 0.867884062 0.87531697 0.894845635 0.874959691 0.880452551 0.84034282 0.857911646 0.877609967 0.893382892 0.907974671 346975888 axe Verticillium dahliae VdLs.17 Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticillium;species:Verticillium dahliae; 1.443354165 1.406196348 1.377938145 1.403586754 1.362820542 1.422290602 1.354553685 1.386499866 1.377385488 1.380523576 1.383303561 1.381330894 1.320554394 1.340915595 1.318363948 1.367920662 1.381762421 1.392074204 336013302 rgl Lachnospiraceae bacterium 3_1_57FAA_CT1 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae; 0.995428846 0.996697379 1.018836696 1.113315622 1.022994036 1.032749075 1.084140118 1.062726417 1.071263964 1.02497258 1.016101199 1.072615183 1.02912467 1.01410867 1.028137949 1.038898004 1.034915346 0.99966996 142850069 nirb Aeromonas salmonicida subsp. salmonicida A449 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas salmonicida; 1.122142741 1.154195396 1.095787955 1.118377768 1.125142489 1.118638702 1.101964202 1.099284625 1.099056872 1.124767798 1.111235016 1.123112559 1.099841194 1.08150089 1.101199564 1.093181449 1.12008008 1.130123601 145569142 ppx Pseudomonas stutzeri A1501 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 1.141037682 1.130516824 1.140378748 1.143294689 1.089049507 1.137665838 1.09000234 1.127115917 1.139406714 1.129700657 1.116466525 1.121906771 1.094957724 1.114079235 1.076037317 1.103088629 1.142288116 1.162332761 373892887 amyA Mucilaginibacter paludis DSM 18603 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Mucilaginibacter;species:Mucilaginibacter paludis; 1.137074905 1.107013273 1.103971285 1.093325532 1.092569768 1.106305349 1.095034262 1.10747475 1.089364063 1.091991361 1.080834947 1.078279918 1.081239928 1.044377008 1.054809458 1.056680428 1.117769688 1.083875827 336301057 RgaE Paenibacillus mucilaginosus KNP414 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 1.067411535 1.026915786 0.963973913 0.984179398 0.984445296 0.98838107 0.98595777 0.98645825 0.993550828 1.028647701 0.986328083 0.992515406 0.990486458 0.98698879 0.892789526 0.957949535 0.984026094 1.05734002 346644377 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.903961869 0.867944567 0.89980026 0.923056281 0.88729378 0.883207038 0.898917867 0.915851669 0.877350877 0.890018046 0.821961651 0.907133567 0.880307238 0.891965549 0.872415459 0.812756134 0.905310589 0.818421317 29652474 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.198697418 1.2205161 1.164168976 1.197498729 1.157139029 1.21353479 1.144377429 1.155444814 1.142686014 1.17051561 1.154891022 1.160670469 1.146812171 1.145963642 1.128710461 1.171486426 1.186683251 1.191307233 299749838 exoglucanase Coprinopsis cinerea okayama7#130 Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 0.923333636 0.815932092 0.880840645 0.887888392 0.895943875 0.914822173 0.868734457 0.872398191 0.918149652 0.866363973 0.905563259 0.829576914 0.872112483 0.851248844 0.843264772 0.936043961 0.869024155 170774970 pcpe Leptothrix cholodnii SP-6 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Leptothrix;species:Leptothrix cholodnii; 0.801316613 0.787388447 0.797774211 0.795011351 0.806343351 0.814344978 0.776556329 0.818346013 0.816656921 188028898 nasa Erwinia tasmaniensis Et1/99 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia tasmaniensis; 0.872714011 0.821304091 0.826986806 0.804768082 0.79544533 0.830833152 0.829583281 0.82209991 0.832799314 302038990 arsm Candidatus Nitrospira defluvii Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Nitrospirae;class:Nitrospira;order:Nitrospirales;family:Nitrospiraceae;genus:Nitrospira; 0.947286501 1.054393017 0.934191552 1.020735148 0.954280172 0.915661738 0.998855202 0.925277683 0.972167898 0.956739382 0.923059254 0.963582246 0.908226489 0.904760053 0.833479502 0.934705883 0.955853523 0.921706827 170027539 napa uncultured bacterium Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria; 0.880887 0.848819704 0.824620293 0.874933701 0.828760095 0.848572408 0.870748254 0.906913766 0.896641805 0.799460916 0.835609433 0.931040764 0.798798296 283812112 amyA Kribbella flavida DSM 17836 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Kribbella;species:Kribbella flavida; 0.963504682 1.001921553 0.961469133 0.980605662 0.926904663 0.95903476 0.910483713 0.93446481 0.951795546 0.938517644 0.933722977 0.974458542 0.932234028 0.929369102 0.907473134 0.954896929 0.955765797 0.918222032 386723586 amyA Paenibacillus mucilaginosus K02 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 0.945482638 0.879963951 0.841577949 0.954856436 0.839752496 0.90120076 0.841697715 0.891574169 0.883229231 0.882138904 0.848263126 0.894379687 0.844989191 0.842816927 0.803640948 0.849873412 0.912984598 0.897258449 84667063 GAPDH_Calvin Maritimibacter alkaliphilus HTCC2654 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Maritimibacter;species:Maritimibacter alkaliphilus; 1.166342809 1.136192268 1.110664831 1.125892031 1.114823668 1.133808402 1.073384736 1.102544191 1.097333719 1.084776832 1.079402542 1.099722751 1.110685794 1.071205228 1.068953227 1.095429866 1.125037237 1.127345274 297192306 chitinase Streptomyces pristinaespiralis ATCC 25486 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces pristinaespiralis; 1.006649906 0.986171194 1.115253391 0.950360597 0.944745919 1.018166525 0.930375034 0.987661826 0.957431 0.995786955 1.003384071 0.974063143 0.900759464 0.961356542 0.894135979 0.892001841 0.998738422 0.999047494 121706314 phospholipase_B_fungi Aspergillus clavatus NRRL 1 virulence degradation NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 0.940141617 0.984473911 0.982145387 0.998937317 1.013411667 0.980529592 0.979663793 1.006883064 0.965607707 0.95272932 1.012576779 0.985304002 0.953712216 0.928344673 0.941587094 0.891929436 0.928331302 0.923508157 117928091 nitrilase Acidothermus cellulolyticus 11B Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Acidothermaceae;genus:Acidothermus;species:Acidothermus cellulolyticus; 1.086717246 1.088753818 1.058708769 1.034643994 1.053795581 1.064554739 1.0143852 1.046122041 1.047489842 1.059989574 1.034514744 1.069776797 1.025559346 1.047540247 1.000449685 1.039339719 1.067193652 1.078602135 379720568 b_lactamase Paenibacillus mucilaginosus 3016 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 1.101825161 1.064211201 1.068934798 1.094392653 1.078342276 1.096043345 1.048967773 1.063276552 1.053810623 1.052263422 1.052143832 1.064098012 1.046978769 1.027209338 1.064775204 1.027120797 1.106285857 1.069709897 327372716 SoxC Burkholderia gladioli BSR3 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia gladioli; 1.037171738 0.9419846 0.901985422 0.912405874 0.851904158 0.870898583 0.868048888 0.910108909 0.928321665 0.923384023 0.897305038 0.918757938 0.819513043 0.872443573 0.855480263 0.840976157 0.924336399 0.939980222 139003319 nifh uncultured nitrogen-fixing bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 1.221939865 1.195816804 1.165496805 1.215063313 1.150296972 1.201243415 1.158134204 1.188185209 1.180052811 1.176506059 1.136809763 1.1877608 1.144353814 1.171025794 1.176908699 1.174624059 1.211666328 1.183097179 20799543 silicon_transporter NA Metal Homeostasis Silicon Transport 0.857406937 0.907533225 0.854917697 0.801977476 0.887897548 0.846763993 0.874046062 0.821902544 0.82306444 0.834024571 0.952305894 0.840066372 0.872395084 0.850459231 0.847849617 0.789444743 311033201 ppx Bacillus sp. m3-13 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 0.982888292 1.003185234 1.008302217 1.024074867 1.016505756 1.01329388 1.023103146 1.016130099 1.105456166 1.01799494 0.98029167 1.034388069 0.972983365 0.978696401 0.901471879 0.958815735 0.9248525 1.053506046 302527949 amyA Streptomyces sp. AA4 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 1.00173655 1.051378897 0.999027524 1.02743245 1.013184379 1.038744491 1.002637285 1.010003843 0.965061666 1.003528698 0.984032732 1.017294847 1.005232383 1.01005056 0.987065204 1.000988185 1.021434925 1.043791177 214044081 alkk Roseobacter sp. GAI101 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 1.244170266 1.250475165 1.257543962 1.261383534 1.2390876 1.266712146 1.248518823 1.260350649 1.262876613 1.243691568 1.247153041 1.265565198 1.194476338 1.164325708 1.195129073 1.1842256 1.278166328 1.227366734 85696951 arsc Nitrobacter sp. Nb-311A Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter; 0.814218001 0.823506508 0.804510728 0.817777672 0.770821243 0.84226992 375750564 cutinase Gordonia polyisoprenivorans VH2 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia polyisoprenivorans; 1.342832711 1.310069403 1.302187461 1.300961442 1.284433517 1.313778692 1.274309369 1.288554875 1.290518337 1.32204605 1.285868525 1.289709063 1.264598273 1.238848008 1.220476438 1.235410602 1.331001948 1.29142149 333481962 urec Amycolicicoccus subflavus DQS3-9A1 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Amycolicicoccus;species:Amycolicicoccus subflavus; 0.894183351 0.975319085 0.899808171 0.905048114 0.930672229 0.975545332 0.88718113 0.943374731 0.964714704 0.954058109 0.875371971 0.943878225 0.890828623 0.961090678 0.958416687 0.883713382 0.990806242 0.996617483 50954092 amyA Leifsonia xyli subsp. xyli str. CTCB07 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Leifsonia;species:Leifsonia xyli; 1.386224183 1.334158489 1.315877742 1.35958461 1.307184797 1.351509092 1.307398804 1.355335284 1.32296442 1.302607461 1.297872633 1.327686815 1.265971688 1.270836197 1.249340917 1.295649634 1.355023206 1.307850399 323525434 TIM Burkholderia sp. CCGE1001 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 1.001977382 0.901593467 0.960902707 0.911514608 0.933365692 0.950698984 0.971271208 0.991261385 0.916485729 0.898756156 0.930069978 0.916981258 0.910482324 0.808796939 0.858896398 0.820804748 0.957548016 0.924074447 37726843 dsra uncultured prokaryote Sulfur sulfite reduction NA 0.765465274 0.807692085 0.831360972 0.820566723 0.796002299 0.806862743 0.825479029 0.846277505 157285341 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.147606119 1.122644596 1.102028808 1.119047257 1.084092264 1.118000126 1.067955723 1.068254493 1.120803965 1.11883007 1.123731946 1.09701592 1.064772245 1.068294805 1.009452179 1.081508493 1.097051207 1.096976223 261202730 p450aro Ajellomyces dermatitidis SLH14081 Organic Remediation Aromatics polycyclic aromatics superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces dermatitidis; 0.904617829 0.862859956 0.910995838 0.94968624 0.929461635 0.947988156 0.913569642 0.964960033 0.942636538 0.87303523 0.928070891 0.914829066 0.921948111 0.888509759 0.91572494 0.90623582 0.921512199 0.886796332 84503302 linc Oceanicola batsensis HTCC2597 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola batsensis; 0.788008232 0.877783613 0.855758238 0.863311536 0.905150519 0.980993186 0.841737068 0.832948867 0.888342762 0.847060587 0.860862081 0.827129452 0.845524684 0.857622214 240279287 phospholipase_D_fungi Ajellomyces capsulatus H143 Carbon Cycling Carbon degradation Phospholipids superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces capsulatus; 1.452241573 1.397949263 1.428413065 1.464045648 1.439433715 1.391832359 1.396723569 1.425308138 1.434739893 1.428271291 1.42660683 1.474383924 1.406246631 1.387959775 1.413535496 1.394102395 1.402874924 1.382539207 119391451 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.891866009 0.889224522 0.904308297 0.911863375 0.869288666 0.897827482 0.83069459 0.886049914 0.89303556 0.889648976 0.872738063 0.860213563 0.827360021 0.894936246 0.860729052 0.857430979 0.879420923 0.916889846 256358127 badh Catenulispora acidiphila DSM 44928 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 0.937583227 0.9231912 0.971578951 0.954461006 0.988196049 0.979486939 0.995621591 0.944667108 0.982383281 0.983023593 0.961101041 0.983966228 0.92232519 0.910607129 0.91312768 0.947424096 1.038651551 0.995694935 302528185 xylg Streptomyces sp. AA4 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 1.122393477 1.117409329 1.12982651 1.101629817 1.131027699 1.108164079 1.080810762 1.049034715 1.102739206 1.093932279 1.081706765 1.09601186 1.054634154 1.046998321 1.04612752 1.07587726 1.128232538 1.120628649 308737201 narg uncultured prokaryote Nitrogen Denitrification NA 0.977112612 0.968599719 0.979937074 0.987384793 1.016424366 0.978733682 0.974275885 0.99161816 0.963475093 0.948293409 0.956992567 0.977810953 0.92568961 0.896751569 0.895110977 0.925463537 1.033572476 0.99349619 220907034 ccmN Cyanothece sp. PCC 7425 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 1.00451272 1.035630741 1.023844051 1.051999395 1.035278277 1.015186466 0.99050076 1.000030924 1.036370981 1.017529768 0.997477797 0.972936308 0.9195145 0.961278521 0.9223193 0.966488327 1.079423552 1.048783735 389877440 dehh109 Tistrella mobilis KA081020-065 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Tistrella;species:Tistrella mobilis; 0.980148294 0.985479234 0.976902721 1.013770301 0.988780756 1.017280711 0.999291538 0.994268951 1.001837048 0.968355578 0.997860112 0.97954393 0.965641694 0.936446024 0.967315302 0.958631548 1.024718831 0.957117657 1841418 Cl_peroxidase_fungi Drechslera biseptata Organic Remediation Aromatics Other aromatics superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Drechslera; 1.085916651 1.074936264 1.09864571 1.111094175 1.087391577 1.146318407 1.1066356 1.114817964 1.143930369 1.109298918 1.075497306 1.160867661 1.064698292 1.107473837 1.060566089 1.089686139 1.102258998 1.123031988 380512523 acetylglucosaminidase Xanthomonas sacchari NCPPB 4393 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas sacchari; 0.874392607 0.7946846 0.874452264 0.97213066 0.804982748 0.79709391 0.858807863 0.925461447 0.857784428 0.8190492 0.911121744 0.834527202 0.8267293 0.826415072 0.874730559 269219875 amyA Actinomyces sp. oral taxon 848 str. F0332 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 848; 0.99550406 1.020890285 1.018479783 1.022690514 1.008303185 1.05039175 1.002443538 1.007906261 1.044550556 1.033783237 1.015948611 1.019298982 1.009341111 0.979908721 0.99104424 1.017935636 1.053843863 1.049395352 334302699 xyla uncultured bacterium Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria; 0.912378172 0.905087343 0.939505424 0.823929858 0.823214087 0.856466168 0.859846495 0.85776886 0.849264323 0.84593246 0.930337439 0.818257313 0.785115086 0.842020935 0.886672445 0.924325142 83651517 bphF1 Burkholderia thailandensis E264 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia thailandensis; 0.76216492 0.825102522 357031438 TIM Gluconobacter morbifer G707 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconobacter;species:Gluconobacter morbifer; 0.945185592 1.056568649 0.892103378 1.134172899 1.118414986 1.093528528 1.032726621 0.984271115 1.195755432 1.142746031 1.116533853 1.230345172 1.031228596 0.911216016 0.871918763 0.99068599 1.059392366 0.935080208 256585216 pcag Saccharomonospora viridis DSM 43017 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora viridis; 1.151094413 1.212963071 1.114719354 1.091635676 1.112693581 1.140367323 1.089192577 1.074924834 1.121012242 1.119566264 1.108955719 1.093574248 1.082951462 1.101101944 1.075395912 1.081391325 1.142920056 1.153595377 27657621 chne Arthrobacter sp. BP2 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 1.041868812 1.057881133 1.038397072 1.056313263 1.050184235 1.092056359 1.016694189 0.996198553 1.043879417 1.043539982 1.031345911 1.056556488 1.056470089 1.018474976 1.022844792 1.021099668 1.069726205 1.047422703 56798379 catechol_b uncultured bacterium Organic Remediation Aromatics Other aromatics superkingdom:Bacteria; 0.989332068 1.009535222 1.013371625 0.986876774 0.926182363 0.996826302 0.938126102 0.974267335 1.003031622 0.960532508 0.962795874 0.959186256 0.963753532 0.942161466 0.928780195 0.9616348 0.981228308 0.971069457 288920236 tfda Frankia sp. EUN1f Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 1.054074669 1.058385583 1.040266082 1.057242409 1.064565286 1.053870805 1.051345959 1.064978466 1.072926921 1.043569443 1.029210243 1.043845204 1.031094118 1.019208735 0.997835349 0.996535445 1.048077641 1.060781004 345501586 xylanase Roseburia hominis A2-183 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Roseburia;species:Roseburia hominis; 0.763476705 0.802697964 0.796034198 0.797166149 0.81704449 0.835719723 319925450 RgaE Terriglobus saanensis SP1PR4 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Terriglobus;species:Terriglobus saanensis; 1.061546698 1.01287029 1.034996853 1.057003622 1.017287415 1.038372124 1.066920491 1.038138992 1.002408547 1.018283064 1.013949305 1.013135731 0.956343601 0.944257494 0.98067724 0.978843577 0.997840982 1.052080336 239821479 FBPase Ochrobactrum intermedium LMG 3301 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum intermedium; 1.530960387 1.468029906 1.488337202 1.495804941 1.473327026 1.513095683 1.480758148 1.508483185 1.478143423 1.45058861 1.490930547 1.498630249 1.460692015 1.441756323 1.461205984 1.476924235 1.482913349 1.451726736 145257729 endochitinase Aspergillus niger Carbon Cycling Carbon degradation Chitin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 0.835241306 0.822241512 0.850430228 1.006213417 0.829548062 0.813846945 0.807991193 0.816204723 0.787436794 0.805123972 0.837155826 111065500 protease_serine_fungi Phaeosphaeria nodorum SN15 Carbon Cycling Carbon degradation protein superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Phaeosphaeriaceae;genus:Parastagonospora;species:Parastagonospora nodorum; 1.078085118 1.019085488 0.967407111 1.058113695 0.963330891 1.030427042 1.007262561 1.008769625 1.050698866 1.004111494 0.977932283 1.03341491 0.948840363 0.968485722 0.954603729 1.014227598 1.059975069 1.02697317 332377224 fthfs uncultured bacterium Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria; 0.832815295 0.809740384 0.823113826 0.851790073 0.839148147 0.810386702 0.85130078 0.857562736 0.832698781 0.832579329 0.824626081 182634511 fthfs Beijerinckia indica subsp. indica ATCC 9039 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Beijerinckia;species:Beijerinckia indica; 1.044052772 1.048401113 1.031846711 0.991045624 0.995472339 1.026793995 0.980025006 0.98153862 0.98473646 1.007433828 0.968490014 1.004431413 0.994085039 0.981843158 0.985425374 0.973498844 0.989360799 1.027355768 349699926 ppx Gluconacetobacter europaeus LMG 18494 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter europaeus; 1.172639394 1.083635745 1.052939946 1.119496827 1.059582761 1.09115242 1.051994502 1.099085618 1.10752855 1.072508314 1.088286408 1.098080606 1.051172982 1.030693421 1.003874417 1.067759926 1.119176083 1.083270509 119391465 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.790873935 0.842546439 0.798642341 0.831861579 0.821157723 0.81285303 0.815765821 0.83611838 352085469 amyA Rhodanobacter sp. 2APBS1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Rhodanobacter; 0.857478309 0.819090947 0.881222197 0.850280804 0.810221233 315924078 fthfs Pseudoramibacter alactolyticus ATCC 23263 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Eubacteriaceae;genus:Pseudoramibacter;species:Pseudoramibacter alactolyticus; 0.833026364 0.802369689 0.80520117 0.980506136 0.823371165 0.808484205 0.822619155 0.799767197 0.838495979 0.809727086 0.799730401 0.846321471 0.804101186 0.818069828 332652849 arsc Ruminococcaceae bacterium D16 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae; 1.098800159 1.07742364 0.956947305 0.978274265 1.060125869 0.93806315 0.915696095 1.009315969 0.938411855 0.929317502 0.960333375 0.952576962 0.922540144 0.91345907 0.8810198 0.957825796 0.981144285 0.933892411 374610031 mer Mycobacterium tusciae JS617 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tusciae; 1.08793927 1.073018319 1.073839148 1.068270145 1.10306072 1.06272482 1.057764956 1.086568531 1.083629322 1.068470663 1.063784552 1.084810741 1.036651008 1.032212819 1.018120261 1.110454263 1.060665807 1.090831658 117558989 ppx Aeromonas hydrophila subsp. hydrophila ATCC 7966 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas hydrophila; 0.845109904 0.913627694 0.863260612 0.827193107 0.880724289 0.870972358 0.877181875 0.818530172 0.8852371 0.894456994 0.881179973 0.825830268 0.841868358 0.852119395 0.899021689 0.901221052 6175856 pectinase (pectate_lyase) Erwinia chrysanthemi Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya; 1.138981451 1.12400382 1.12950631 1.150507021 1.111790593 1.114415493 1.120871275 1.15020135 1.117579917 1.121830292 1.163648171 1.14368016 1.099836277 1.08658542 1.124994918 1.11500711 1.12688383 1.113157412 285310019 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.865265259 0.979669821 0.902579111 0.900372815 0.912157721 0.888430365 0.87650514 0.87819752 0.918142195 0.881112094 0.91499222 0.873313273 0.921780309 0.888680539 0.879224731 0.892873491 0.915464933 355574948 amyA Olsenella sp. oral taxon 809 str. F0356 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Olsenella;species:Olsenella sp. oral taxon 809; 0.916515949 0.936616135 0.936535003 0.911848821 0.870413423 0.943918352 0.900803662 0.895214996 0.922086658 0.950930098 0.904140564 0.897016754 0.882281094 0.872225568 0.820016579 0.850376553 0.930390765 0.970354045 254414123 amyA Microcoleus chthonoplastes PCC 7420 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Coleofasciculus;species:Coleofasciculus chthonoplastes; 0.907904734 0.886285186 0.927361846 0.893162422 0.88241492 0.901137712 0.876795031 0.857520986 0.920445877 0.904179588 0.885981019 0.827454538 0.859257842 0.878302684 0.825136237 0.837769115 0.890383673 0.908513845 284988877 linb Geodermatophilus obscurus DSM 43160 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Geodermatophilaceae;genus:Geodermatophilus;species:Geodermatophilus obscurus; 0.909284795 0.955990585 0.875939662 0.956906759 0.912354885 0.947359099 0.905573357 0.900852088 0.912208359 0.970141266 0.935011901 0.946466437 0.947237995 0.922586033 0.840277214 0.920084731 0.939770412 0.944606997 260645984 RgaE Streptomyces scabiei 87.22 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces scabiei; 1.101849217 1.090283682 1.043361072 1.088801698 1.07706414 1.060949 1.051790149 1.057256465 1.068843583 1.049509077 1.098983929 1.108432207 1.080093077 1.054053569 1.013781022 1.055398533 1.069128282 1.061912864 85671829 TIM Roseovarius sp. 217 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 0.833076765 0.827269793 0.808038784 0.874812445 0.83433694 0.843843412 0.825035236 0.803776452 124267977 pgk Methylibium petroleiphilum PM1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 1.118978238 1.10189932 1.071883643 1.093904146 1.057654984 1.08020815 1.040113203 1.068401593 1.074472279 1.079356354 1.06535095 1.06046302 1.028186982 1.050629138 0.982715222 1.052968766 1.090372708 1.098968967 159036911 mhpa Salinispora arenicola CNS-205 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora arenicola; 1.200066778 1.171542308 1.191041368 1.212268727 1.182402627 1.220385867 1.199173637 1.174943969 1.196768622 1.185496247 1.190850444 1.207251604 1.176556285 1.168324144 1.18759821 1.177382228 1.232088129 1.148827531 256362530 acetylglucosaminidase Catenulispora acidiphila DSM 44928 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 1.054584819 1.060049419 1.04923544 1.053575638 1.050104497 1.044963114 1.055271915 1.014795208 1.031350686 1.038471169 1.049513893 1.019336356 0.995615103 0.998634332 0.991073252 1.015791137 1.05867312 1.054972841 328927546 nifh Methanosaeta concilii GP6 Nitrogen Nitrogen fixation NA superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosaetaceae;genus:Methanosaeta;species:Methanosaeta concilii; 0.870305137 0.886507538 0.826719901 0.829272411 0.879453012 0.844407191 0.836639007 0.832137407 0.82990262 0.85308665 0.90770796 226363144 catechol_b Rhodococcus opacus B4 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus opacus; 1.073225591 1.043390726 1.039950245 1.023143905 1.047599371 1.035681832 0.974625673 0.979734673 1.04399684 1.003903847 0.96249158 0.966218378 0.991597779 0.959177108 0.918783275 0.937456256 1.054437898 1.038252981 378570327 xylanase Paenibacillus mucilaginosus 3016 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 0.884441963 0.998554862 0.91545162 1.022786896 1.074339963 0.951760016 0.985858835 0.905880164 0.963569902 1.03910188 1.068866546 1.054707672 0.966677065 0.884554796 0.836565309 0.890515194 0.9523161 0.91726772 70930923 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.003947592 1.004579602 1.044233394 1.001959344 1.084781386 1.053777917 1.045404009 1.03003909 1.04484405 1.032813056 1.05041204 1.153858027 1.004962938 1.001817264 1.007250884 0.9548246 1.030838628 1.029937016 221725862 TIM Agrobacterium radiobacter K84 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 0.958948882 0.924334704 0.94204017 0.93154331 0.913243754 0.93547465 0.888975689 0.895173389 0.928636032 0.899975121 0.916833825 0.906781929 0.917247319 0.890071289 0.866480806 0.892957263 0.9388345 0.939801941 27382714 mdlc Bradyrhizobium japonicum USDA 110 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium diazoefficiens; 1.009960059 1.067998253 0.976149161 0.99629947 0.998410453 1.02076886 0.987745749 0.974637138 0.976711371 0.988184218 1.0188362 1.028505367 0.981583393 0.984806448 0.959573185 1.00840613 1.015916192 1.027777145 361054799 FBP_aldolase Sulfobacillus acidophilus DSM 10332 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XVII. Incertae Sedis;genus:Sulfobacillus;species:Sulfobacillus acidophilus; 1.1178978 1.151477678 1.093794297 1.120428721 1.094624408 1.131669969 1.080333595 1.083609364 1.09933719 1.120632954 1.077974861 1.094919527 1.085479173 1.089152785 1.127009895 1.115711928 1.141473916 1.129425849 332377358 fthfs uncultured bacterium Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria; 0.975032428 0.832304929 0.878648107 0.778014725 0.809567019 0.908870161 0.888616819 0.807254588 0.870155211 116194900 pme_Cdeg Chaetomium globosum CBS 148.51 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 1.430135101 1.425565138 1.39714114 1.376688034 1.368462916 1.453464245 1.369258206 1.387446547 1.372546882 1.405580809 1.385219815 1.402897273 1.355623447 1.388286178 1.366638482 1.393202711 1.402900584 1.427913253 32895196 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.120117387 1.107780099 1.080733461 1.077897973 1.133077411 1.114764888 1.102724999 1.053309435 1.047228378 1.081900474 1.078585634 1.091185911 1.075455693 1.040775635 1.035770099 1.080648878 1.053167013 1.09962618 337763556 amyA Streptomyces cattleya NRRL 8057 = DSM 46488 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces cattleya; 1.063659217 1.034077829 1.011370581 1.087590097 1.012531448 1.045873268 1.003031188 1.032475623 1.037859061 1.031130647 1.01789058 1.021375283 1.017071968 0.97088509 0.969806679 1.025867043 1.10924018 1.030796611 353185100 amyA Mycobacterium rhodesiae JS60 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 0.994166143 0.938720675 0.975269829 0.986993415 0.887993955 1.00600474 0.93453042 0.943646514 0.984440011 0.938800577 0.950069597 0.946001053 0.918623824 0.935736254 0.916668584 0.913751183 0.997714771 0.907436152 388006915 alkb Pseudomonas synxantha BG33R Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas synxantha; 1.094111262 1.067512371 1.013608053 1.057716211 1.038801771 1.043318719 1.000147245 1.023816225 1.022159567 1.034646418 1.036380528 1.060913103 1.029434915 1.026357819 1.003718882 1.02325786 1.075426743 1.047688729 1244586 ara Aspergillus niger Carbon Cycling Carbon degradation Hemicellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 1.08348742 1.112520161 1.053842363 1.03390831 1.000623954 1.076250966 0.989872731 1.013422206 1.048121007 1.021789234 1.11415971 1.038206401 1.007911197 1.022207501 1.03422387 1.0104205 1.060624393 1.049583173 18313382 AACT_DiC4HB Pyrobaculum aerophilum str. IM2 Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum aerophilum; 1.102898874 1.009464748 1.020725419 1.038953771 0.980423771 1.081354397 0.973762561 1.049248298 1.033359563 1.01500859 1.013050064 1.024774405 1.025142084 1.042384886 1.040093076 1.045301587 1.03866207 1.084006894 76803684 alkb uncultured bacterium Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria; 1.050462816 1.033065483 1.017329744 1.104881816 1.094795148 0.982011284 1.022184142 1.051457877 1.056851476 1.016635205 0.984027456 1.074775394 1.002578731 1.007094711 0.990383722 1.052281555 1.022288222 1.022268136 312218852 phospholipase_C_fungi Leptosphaeria maculans Carbon Cycling Carbon degradation Phospholipids superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Leptosphaeriaceae;genus:Leptosphaeria; 0.80527001 0.825538352 0.790089479 0.806234291 0.829011857 0.786082238 0.811142479 0.855199967 225194140 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.027825621 1.009798301 0.984782055 1.025115277 0.941408227 1.028196831 0.96627652 0.989957843 1.007207607 1.017733859 0.974736288 0.997317522 0.926776528 0.962910144 0.875422334 0.95756162 0.996871189 1.010927798 358239725 amyA Gordonia amarae NBRC 15530 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia amarae; 0.931155033 0.900286621 0.861931673 0.91752275 0.836419266 0.879404988 0.958074377 0.83178083 0.893077046 0.86643293 0.888655037 0.892815308 0.813654565 0.870269894 0.836620764 0.887762376 0.914626107 40557184 ara Aureobasidium pullulans Carbon Cycling Carbon degradation Hemicellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Dothideales;family:Dothioraceae;genus:Aureobasidium; 0.785726014 0.795631457 0.754464021 0.80442386 0.818147138 0.779832746 0.804065867 0.834698998 149919376 arsc Plesiocystis pacifica SIR-1 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Nannocystaceae;genus:Plesiocystis;species:Plesiocystis pacifica; 1.163591509 1.116355017 1.132076112 1.135106051 1.149361653 1.170526881 1.070164624 1.103916901 1.134686952 1.118032782 1.086334821 1.104976721 1.104490581 1.133964582 1.051074937 1.056971189 1.165107249 1.173227091 257170613 amyA Halomicrobium mukohataei DSM 12286 Carbon Cycling Carbon degradation Starch superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halomicrobium;species:Halomicrobium mukohataei; 0.91583735 0.916539278 0.825795002 0.938240274 0.847946153 0.909080394 0.825594555 0.849598314 0.883284378 0.916863547 0.876747 0.88470296 0.826339957 0.992997223 0.90043201 90106701 catechol Rhodopseudomonas palustris BisB18 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 0.981037821 0.916154515 0.921763426 0.947122691 0.962659172 0.969152436 0.908521395 1.043942063 0.967596221 0.990079667 0.891866365 0.855227779 0.863330983 0.911645032 0.926840041 0.911156939 0.931258517 209886181 amyA Oligotropha carboxidovorans OM5 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Oligotropha;species:Oligotropha carboxidovorans; 1.147222911 1.116921041 1.116405772 1.155196127 1.116188958 1.137010487 1.06633819 1.102108811 1.140597902 1.118478062 1.105557885 1.14550285 1.122809102 1.089513682 1.127500208 1.097496774 1.168134349 1.115946511 291197232 exoglucanase uncultured fungus Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi; 0.999240016 0.980354142 0.981486593 0.997605096 1.017699248 1.03059832 1.025093731 1.027141699 1.001421125 0.985190389 0.985489068 0.985663172 0.986635527 0.964997252 0.939254807 0.912678643 1.017030003 1.040100534 109455406 atzb Roseobacter denitrificans OCh 114 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter denitrificans; 0.901948174 0.869797683 0.866769403 0.879207676 0.858646169 0.883424245 0.862453865 0.84106666 0.843255517 0.843474386 0.845476532 0.848668347 0.895055845 0.879787777 365337281 ppk Bradyrhizobium sp. STM 3809 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 1.289469152 1.256552595 1.248086808 1.270420273 1.225701564 1.300215093 1.259598782 1.267389403 1.262517102 1.246236456 1.232554523 1.261680975 1.20990034 1.202873379 1.190469417 1.248060975 1.269149112 1.246948021 331700220 urec Pseudonocardia dioxanivorans CB1190 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Pseudonocardia;species:Pseudonocardia dioxanivorans; 1.084553864 1.098431207 1.038932471 1.069807116 1.04880503 1.081200251 1.006011889 1.031660893 1.057247035 1.066795864 1.047010436 1.070808935 1.039938383 1.055225494 0.965962629 1.025517511 1.0653849 1.091435706 347590442 FBP_aldolase Micavibrio aeruginosavorus ARL-13 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;genus:Micavibrio;species:Micavibrio aeruginosavorus; 0.822204227 0.792186336 0.912257735 0.812065363 0.900242578 0.871665536 0.899174655 0.812585455 189194617 endochitinase Pyrenophora tritici-repentis Pt-1C-BFP Carbon Cycling Carbon degradation Chitin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 0.781424709 0.832391914 0.839136697 0.807127017 0.826737902 0.830776659 0.79497363 0.818289619 0.845933472 356607003 amyA Corynebacterium casei UCMA 3821 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium casei; 1.199946431 1.195388044 1.184356349 1.145890697 1.184674858 1.192366837 1.15783937 1.164282762 1.143504782 1.15958224 1.165764515 1.163175212 1.163858572 1.148629756 1.158825882 1.18414295 1.145906636 1.193343771 300311551 arylest Herbaspirillum seropedicae SmR1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herbaspirillum;species:Herbaspirillum seropedicae; 0.785151685 0.873005749 0.822669113 0.776917921 0.833509642 0.833213744 0.823134934 0.781127353 124363917 mcra Methanocorpusculum labreanum Z Carbon Cycling Methane Methanogenesis superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;family:Methanocorpusculaceae;genus:Methanocorpusculum;species:Methanocorpusculum labreanum; 1.114131331 1.040949087 0.97176786 1.012630153 1.029132113 1.11050599 1.015048325 1.031389527 1.038011534 1.036960406 1.031899357 1.03917106 1.033315729 1.094505568 0.982246078 1.046657807 1.069423119 1.076988975 70906158 bphc Rhodococcus erythropolis Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 0.829067833 0.78443882 0.838632344 0.788954673 0.81308478 0.780789017 0.833733356 299797336 hyaluronidase Amycolatopsis mediterranei U32 Carbon Cycling Carbon degradation hyaluronic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 1.096316789 1.067863593 1.022997606 1.046560941 1.014296919 1.05962463 1.066005422 1.062395467 1.093483372 1.030875203 1.003269152 1.059057188 0.989979384 1.031922023 1.006662418 1.039794111 1.077729392 1.09866613 324110335 mannanase Ruminococcus albus 8 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus;species:Ruminococcus albus; 0.935031721 0.941030465 157373665 nitrilase Shewanella sediminis HAW-EB3 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella sediminis; 0.799793622 0.800421385 219861449 poba Arthrobacter chlorophenolicus A6 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 0.809168644 0.811147125 0.877451502 0.839285631 0.826163324 0.881758016 0.801395165 0.803205441 0.850013082 0.83259292 0.833277858 0.821739974 0.828120272 0.80753277 0.803694052 0.809660933 0.876059197 359820915 mult_ring_12DiOx Mycobacterium rhodesiae NBB3 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 0.945416424 0.863147641 0.939153024 0.968761592 0.954090032 0.936963828 0.927695291 0.978447637 0.957766874 0.943780574 0.944812153 0.933024513 0.898693674 0.886805644 0.885401087 0.855644629 0.940992215 0.860356308 164508115 pmoa uncultured bacterium Carbon Cycling Methane Methane oxidation superkingdom:Bacteria; 0.901388094 0.871078129 0.815511731 0.912911325 0.886910098 0.855325242 0.839495774 0.84320637 0.876104509 0.895210995 0.878549407 55230011 nosz Haloarcula marismortui ATCC 43049 Nitrogen Denitrification NA superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloarcula;species:Haloarcula marismortui; 0.900529063 0.909928243 0.849730217 0.922641394 0.872027698 0.876868779 0.836263191 0.836018918 0.89999949 0.848411434 0.818914501 0.88402761 0.85072617 0.898796892 0.914119642 307546553 cmci Halomonas elongata DSM 2581 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas;species:Halomonas elongata; 0.910342804 0.831720998 0.821690902 0.8664881 0.840443175 0.818888964 0.82738013 0.900591484 0.828584194 0.859311903 0.858221188 259508234 xylc Corynebacterium efficiens YS-314 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium efficiens; 0.782582549 0.828967094 0.81669408 0.811179956 0.83040681 0.911082101 0.860987256 8517646 soxY Paracoccus denitrificans Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus; 1.130235887 1.100435328 1.092751017 1.125079028 1.05607501 1.135868752 1.068919228 1.079152721 1.092119284 1.086783654 1.134181695 1.115516403 1.069786719 1.077570154 1.036150197 1.077348666 1.122119531 1.088975526 119392296 protease_serine_fungi Arthrobotrys musiformis Carbon Cycling Carbon degradation protein superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Orbiliomycetes;order:Orbiliales;family:Orbiliaceae;genus:Arthrobotrys; 1.41517594 1.368676115 1.385448462 1.401486365 1.373484421 1.401410286 1.372128078 1.406478725 1.378048179 1.359472835 1.360365714 1.395926723 1.365799043 1.344273014 1.368826607 1.40207809 1.376969981 1.3409035 379656828 mcra uncultured Methanomicrobiales archaeon Carbon Cycling Methane Methanogenesis superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales; 1.224183596 1.19999763 1.19851559 1.166897821 1.170265705 1.242467046 1.154847943 1.176515498 1.163916964 1.228508238 1.217352998 1.159167891 1.151554999 1.185707873 1.1393266 1.157563278 1.170821449 1.212807841 111020274 badh Rhodococcus sp. RHA1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 1.209596084 0.976792921 0.947313978 0.922848436 0.942291831 0.945792988 0.857738548 0.901300721 0.930339111 0.913847301 0.924996946 0.885177667 0.863330095 0.905695592 0.901343613 0.919569059 0.970483455 0.944604578 326948018 PEPC Thermoproteus uzoniensis 768-20 Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Thermoproteus;species:Thermoproteus uzoniensis; 0.848073127 0.829419576 0.842704256 0.781311105 0.854371158 0.835987289 334103263 camdcab Sphingobium chlorophenolicum L-1 Carbon Cycling Carbon degradation Camphor superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium;species:Sphingobium chlorophenolicum; 0.787284268 0.81594047 0.803143787 0.825856957 0.836582036 0.829646798 383210500 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.824708734 0.824558184 0.806654638 0.826589001 0.816216323 0.851590903 0.810170308 0.828081031 0.806504811 0.820609723 297143539 amyA Bacillus selenitireducens MLS10 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus selenitireducens; 0.823546282 0.821769915 0.830339633 0.824525066 0.831537731 0.799773104 0.80503687 0.834391996 0.913420047 220936358 CsoS2 Thioalkalivibrio sulfidophilus HL-EbGr7 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio;species:Thioalkalivibrio sulfidophilus; 1.177075004 1.194421068 1.127873267 1.125543995 1.155828311 1.158478661 1.092541977 1.10917079 1.121043754 1.112156002 1.14832435 1.200885934 1.08804748 1.094173837 1.061544608 1.112556997 1.146590974 1.141223196 254262268 amyA Enterobacter pulveris Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Cronobacter; 1.13664341 1.150002327 1.123848519 1.136585756 1.108981193 1.147993627 1.107392896 1.120712626 1.12885684 1.144424886 1.114619245 1.130945137 1.062024339 1.114093529 1.076474623 1.129315723 1.137041312 1.142418403 345882730 amyA Prevotella sp. C561 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella; 1.209611971 1.143964057 1.165058972 1.173693521 1.133553657 1.164736857 1.107968429 1.184141896 1.158598436 1.150825787 1.131743598 1.179204895 1.138573465 1.153198948 1.159440131 1.179556093 1.187088535 1.158500304 283799627 pmoa uncultured bacterium Carbon Cycling Methane Methane oxidation superkingdom:Bacteria; 0.992177138 0.856855553 0.867733822 0.933780999 0.91776854 0.943708929 0.841506996 0.905551037 0.910414041 0.870674756 0.979922186 0.833219659 0.987234624 0.824470866 197718482 cellobiase Streptomyces pristinaespiralis ATCC 25486 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces pristinaespiralis; 0.925581875 0.855511825 0.809941785 0.844071384 0.853372175 0.866567538 0.831241405 0.803969777 0.893170258 0.895684001 118424334 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.870412504 0.809443477 0.824083701 0.825318746 0.813198668 0.894817877 0.901339552 0.865548482 0.823597127 0.798675458 0.797427138 0.828500363 0.812286725 254486221 cmci Roseobacter sp. GAI101 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 0.888937786 0.874377367 0.888349074 0.935990685 0.877770701 0.833007848 0.913860747 0.912312928 0.877803685 0.822642978 0.901703238 0.801109237 0.827600723 0.855139209 0.887815381 0.88120633 190569835 beta_agarase Cellvibrio sp. OA-2007 Carbon Cycling Carbon degradation Agar superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio; 0.816310094 0.80379445 0.792486833 0.840509367 389694462 amyA Microvirga sp. WSM3557 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Microvirga; 0.795472145 0.834672696 0.821624404 0.882563819 0.800836017 0.819428498 0.814609133 0.810154277 0.819478493 0.850373934 0.882529115 26278668 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.186579631 1.133257501 1.155421276 1.17782736 1.137212383 1.172914082 1.119996456 1.144300186 1.156508557 1.142909048 1.128030801 1.159856099 1.123557412 1.121997414 1.116822058 1.137719432 1.178415744 1.164196451 309307152 glx Puccinia graminis f. sp. tritici CRL 75-36-700-3 Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;order:Pucciniales;family:Pucciniaceae;genus:Puccinia;species:Puccinia graminis; 1.10109173 1.096882488 1.021406174 1.085510377 1.059194797 1.100264804 1.037938406 1.060805792 1.061563952 1.084015246 1.007574196 1.038836631 1.043311876 1.066237752 1.006567865 1.050214504 1.074039582 1.10876229 296805908 phospholipase_C_fungi Arthroderma otae CBS 113480 Carbon Cycling Carbon degradation Phospholipids superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Arthrodermataceae;genus:Arthroderma;species:Arthroderma otae; 0.84704223 0.918349215 0.807657322 0.879688457 0.885772368 0.889870999 0.860215014 0.812205755 0.865928203 0.821626353 0.816956573 0.838733806 0.838175911 352090373 mer Rhodanobacter sp. 2APBS1 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Rhodanobacter; 0.872533445 0.927995647 0.870978539 0.861989815 0.843668359 0.818644067 0.853587161 0.863910053 0.900005788 0.807445549 0.869318645 0.794858475 0.802922332 0.908869999 0.93041806 158333751 ppx Acaryochloris marina MBIC11017 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Acaryochloris;species:Acaryochloris marina; 0.824173377 0.853371591 0.830903708 0.872802599 0.783135181 0.792165039 0.814786879 0.889157294 0.892554326 0.84601299 0.901455466 0.788796454 0.805946014 0.832170701 0.888728226 0.862692694 124488197 napa uncultured bacterium Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria; 0.773716253 0.812982135 0.930076056 0.812725487 0.832338361 255292536 xylg uncultured bacterium Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria; 1.139101819 1.149204049 1.140080771 1.134438127 1.143906423 1.141538758 1.108780533 1.091389903 1.083367009 1.079345584 1.119864785 1.141286218 1.129168554 37726853 dsrB uncultured prokaryote Sulfur sulfite reduction NA 1.102727331 1.05862663 1.0626686 1.110551145 1.032131747 1.086246886 1.048462397 1.093517957 1.089275011 1.066219944 1.054724543 1.066006773 1.045884295 1.036844434 1.064106679 1.049557044 1.08509001 1.033993859 70996801 arsm Aspergillus fumigatus Af293 Metal Homeostasis Arsenic Detoxification superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus fumigatus; 0.953160201 0.936098334 0.911360778 0.907127244 0.90646224 0.907157163 0.909439928 0.952105522 0.908046488 0.869585079 0.879558119 0.908133494 0.859554372 0.850654695 0.82067493 0.856284428 0.918669736 0.956685678 78193355 ppx Geobacter metallireducens GS-15 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter metallireducens; 0.858246074 1.023897332 0.835946614 0.914582804 0.889910326 0.889052683 0.883133071 0.912108973 0.885112585 0.916445108 0.872203378 0.914008384 0.894850892 0.870867614 0.873110288 0.878338984 0.886094912 0.919167977 402492085 badh Rhizobium sp. CCGE 510 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 0.855749648 0.818184612 0.849370445 0.827551707 0.831406795 0.843849901 0.84343833 86572641 ppx Rhodopseudomonas palustris HaA2 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 0.927055631 0.948438438 0.94132864 0.91759418 0.917751451 0.945222451 0.934030247 0.897032577 0.897979043 0.960863087 0.992103344 0.926894279 0.940113379 0.892967542 0.934473858 0.939655604 0.928479718 0.941171129 374310117 amyA Granulicella mallensis MP5ACTX8 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Granulicella;species:Granulicella mallensis; 0.845944243 0.887867307 1.080552677 0.868808351 0.963508354 0.962954974 0.863822449 0.859993909 0.853881697 0.841066451 0.944526313 0.888606774 0.857119947 1.075969318 0.853553398 0.985408696 1.008548333 83592244 CsoS1_CcmK Rhodospirillum rubrum ATCC 11170 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum rubrum; 0.906946795 0.876442411 0.865753273 0.935480847 0.834339385 0.857349643 0.815048411 0.876197108 0.877305102 0.852980507 0.805789611 0.84144872 0.84478859 0.930991241 0.875740981 269960900 FBPase Vibrio harveyi 1DA3 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio harveyi; 1.102403024 1.193227671 1.084667692 1.12870194 1.106049321 1.117455685 1.123227108 1.079410964 1.105256433 1.100856052 1.098009791 1.114687201 1.118879808 1.071985015 1.09465056 1.105109432 1.132340438 1.051567402 300022922 soxY Hyphomicrobium denitrificans ATCC 51888 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium;species:Hyphomicrobium denitrificans; 0.845871973 0.868795368 0.865202709 0.875636404 0.823354461 0.894318921 0.882902244 0.848070685 0.851184681 0.882965086 0.845936403 0.865866594 0.879750182 0.868987815 0.880829297 0.924834897 0.866187685 186681596 PRI Nostoc punctiforme PCC 73102 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc;species:Nostoc punctiforme; 1.402297361 1.358597816 1.293645161 1.403365742 1.231932086 1.384620381 1.26347809 1.379221029 1.311977465 1.376033899 1.266562293 1.365842584 1.226341363 1.30694227 1.228888601 1.320901422 1.428283081 1.378099033 383335264 xyla Mycobacterium phlei RIVM601174 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium phlei; 1.316364068 1.37023573 1.302188813 1.327144218 1.268043388 1.367821529 1.263444296 1.272997429 1.288075752 1.323347443 1.290433299 1.302126982 1.290243676 1.308420997 1.227536836 1.297528923 1.332970693 1.326166511 62825529 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.958030006 0.947549421 0.940530306 0.961788174 0.888866924 0.961047609 0.891191859 0.893084755 0.924138922 0.932171994 0.890383878 0.921859576 0.890722644 0.887852231 0.876919257 0.884654803 0.962410798 0.940943682 222084953 ppx Agrobacterium radiobacter K84 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 1.117829592 1.113568463 1.048766749 1.089172839 1.017345916 1.079917286 1.04643173 1.077449366 1.088768261 1.141010562 1.028416958 1.086433859 1.027122059 1.066136392 1.025916275 1.071534226 1.115403873 1.137218346 67525863 exopolygalacturonase_fungi Aspergillus nidulans FGSC A4 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 0.833521257 0.811944538 0.799935411 317464253 linb Pseudoxanthomonas suwonensis 11-1 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Pseudoxanthomonas;species:Pseudoxanthomonas suwonensis; 0.778048809 0.803671761 0.835285642 0.812416642 0.781200642 0.818295734 0.846551217 0.824127216 0.844394982 227548972 urec Corynebacterium lipophiloflavum DSM 44291 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium lipophiloflavum; 0.915728843 0.917059247 0.881038276 0.902544072 0.864864834 0.868851896 0.834235687 0.851126032 0.853951058 0.861008743 0.858334859 0.851286255 0.914066901 0.830820664 0.883727891 0.878554216 0.849567793 338805878 arsm Nitrosomonas sp. Is79A3 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas; 1.135428553 1.091955056 1.060421393 1.080311505 1.082987122 1.056804251 1.028905469 1.126142244 1.129254317 1.028812709 1.101063624 1.095830295 1.070451051 1.032194741 1.045018134 1.049145257 1.079254275 1.082876197 70672913 nifh uncultured nitrogen-fixing bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.944896931 0.887192354 0.941005575 0.912207632 0.915831131 0.916538936 0.892998263 0.939385187 0.917913876 0.934653339 0.910880003 0.920494234 0.837287651 0.847908124 0.898380967 0.870458355 0.927039155 0.878803731 299133803 FBPase Afipia sp. 1NLS2 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Afipia; 0.87620429 0.862350753 0.844159056 0.811932389 0.818195315 0.79530252 0.827997812 0.818654658 0.837824947 384440131 amyA Thermus sp. CCB_US3_UF1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus; 1.037951622 1.076677748 1.033488609 1.061845443 1.020967132 1.019978684 1.018513378 1.033479179 1.058121602 1.047136958 1.029425065 1.07915234 0.989170035 1.004830008 1.017349447 1.001090912 1.042155352 1.042930407 169157603 ppk Clavibacter michiganensis subsp. sepedonicus Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Clavibacter;species:Clavibacter michiganensis; 0.967980011 0.989403645 0.953100764 0.958617533 0.946981367 0.969292935 0.936832088 0.980289116 0.948872397 0.968964567 0.944928385 1.033743659 0.897614956 0.957646737 0.906678768 0.937775872 0.979378961 0.972669857 55791916 catechol_b uncultured bacterium Organic Remediation Aromatics Other aromatics superkingdom:Bacteria; 1.106516688 1.056020703 1.055781269 1.129125504 1.07514278 1.120829272 1.088610876 1.104637994 1.090201079 1.078779411 1.077608094 1.097197384 1.045965193 1.072637591 1.061558052 1.052950864 1.092139047 1.079741618 45386185 narg unidentified bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.91355166 0.897478284 0.947692049 0.898361593 0.963662583 0.916926465 0.941324646 0.95433985 0.939435189 0.954482874 0.91529831 0.930676751 0.884297322 0.874525797 0.912130715 0.911457409 133913413 amyA Saccharopolyspora erythraea NRRL 2338 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 0.871621548 0.963724431 0.904061306 0.944088565 0.923597274 0.927924082 0.871539506 0.833414644 0.927047182 0.902344066 0.879706904 0.897504395 0.909867448 0.931299738 0.839212702 0.899995014 0.896019234 0.908277879 283952463 B_lactamase_A Acidaminococcus fermentans DSM 20731 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Acidaminococcaceae;genus:Acidaminococcus;species:Acidaminococcus fermentans; 1.199901474 1.177432819 1.172213571 1.195453879 1.128189762 1.218594406 1.147587344 1.211935919 1.187841766 1.156891079 1.153573651 1.168042235 1.105353035 1.158235735 1.105892097 1.143318565 1.182472088 1.167292644 74038296 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.784824782 0.820323867 0.782587005 0.774129075 298291958 fccab Starkeya novella DSM 506 Sulfur Sulfide Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Starkeya;species:Starkeya novella; 1.130110779 1.124906207 1.119352626 1.110313256 1.115865678 1.143811783 1.088711029 1.133499423 1.100933253 1.093822452 1.134142518 1.118360707 1.105537717 1.116712521 1.117924367 1.102358809 1.114746321 1.125292662 313894164 ccmL Veillonella sp. oral taxon 158 str. F0412 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Veillonella;species:Veillonella sp. oral taxon 158; 0.86244478 0.949623323 0.850272337 0.896211097 0.89703478 0.891147379 0.852870308 0.850935069 0.897381779 0.863326088 0.870212582 0.943970691 0.848840135 0.834544843 0.843305496 0.881261163 0.866791046 334888856 pgk Salinisphaera shabanensis E1L3A Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Salinisphaerales;family:Salinisphaeraceae;genus:Salinisphaera;species:Salinisphaera shabanensis; 1.104479161 1.076958098 1.066618493 1.070591197 1.052242546 1.081132345 1.016438878 1.047129339 1.066571451 1.080591952 1.039153772 1.06053874 1.025097262 1.073028218 1.023722062 1.032477512 1.080712593 1.090769229 344038773 alginase Streptomyces violaceusniger Tu 4113 Carbon Cycling Carbon degradation Alginate superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces violaceusniger; 0.977157152 1.060068846 0.971754743 0.973949977 0.935377351 0.994072628 0.978368223 0.988932242 0.974076352 1.013377 0.913822311 0.972848351 0.87552061 0.943789417 0.815397214 0.934067549 0.925734381 0.978682323 156860036 fthfs Bacteroides uniformis ATCC 8492 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides uniformis; 0.834017206 0.830340859 0.880192408 0.880371574 0.852835926 0.834434405 0.851594681 0.8434582 0.849580589 0.890248449 0.896355201 0.927345134 0.848620947 0.815330694 0.816500167 0.830667438 0.873898852 0.861887101 144900614 arsc Magnetospirillum gryphiswaldense MSR-1 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum gryphiswaldense; 0.87067631 0.887175316 0.915200958 0.878435974 0.943712898 0.924026048 0.963694925 0.933387767 0.874684334 0.916488158 0.894695689 0.853555778 0.909871851 0.904145742 119954372 mult_ring_12DiOx Mycobacterium vanbaalenii PYR-1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 1.137817859 1.178481252 1.165514208 1.137459145 1.141316036 1.16584468 1.135178364 1.108459564 1.101836418 1.150758602 1.136264406 1.164841763 1.129095992 1.109093253 1.105421955 1.148010113 1.116171952 1.147345389 4757094 mer Streptomyces coelicolor A3(2) Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 1.007735781 0.910747465 1.064047368 0.995720176 1.005890437 1.007904003 1.00672833 0.998095707 0.990991652 0.974258832 0.945529495 0.952734768 0.949185104 0.942859272 0.893628725 0.925702329 0.97614272 0.985087087 17430694 vdh Ralstonia solanacearum Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 1.06886588 1.073304534 1.032843797 1.064610135 1.033608677 1.066632265 1.045073393 1.089018464 1.057392563 1.046886362 1.034797504 1.049106801 1.036584007 1.037703273 1.062375519 1.044108258 1.054760398 1.069747394 75674788 cysJ Nitrobacter winogradskyi Nb-255 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter winogradskyi; 1.334915198 1.312392064 1.292944795 1.29299652 1.269163071 1.318086622 1.268134934 1.28437123 1.287361962 1.27017627 1.281714436 1.29094424 1.269887142 1.25616364 1.279290905 1.276247306 1.312325455 1.292340529 320334408 amyA Deinococcus maricopensis DSM 21211 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus maricopensis; 0.854599214 0.890962253 0.937933634 0.949492559 0.89774928 0.893023353 0.937992086 0.948911406 0.860820145 0.879769075 0.894957387 0.864022709 0.814447544 0.828663454 0.815242343 0.895902319 0.924161962 54778329 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 1.002277341 0.948950812 0.953515978 0.938240755 0.91087168 0.906449351 0.957787762 0.911203104 0.969716046 0.971893127 0.895809098 0.951464986 0.934819928 0.892806809 0.883235035 0.912395346 0.959340302 0.985360695 3157528 nifh unidentified nitrogen-fixing bacteria Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.936546822 0.923223133 0.895512619 0.909948603 0.911866491 0.890608513 0.849517663 0.838287235 0.873994069 0.863320638 0.826541722 0.884651813 0.943538217 0.861329771 0.844051542 0.855782063 0.894404388 0.899949557 209401968 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.1165428 1.120756148 1.092073168 1.155939187 1.095470119 1.0941506 1.113841246 1.092786482 1.113549013 1.094672282 1.087424463 1.126153661 1.078796901 1.070839626 1.082858819 1.107710332 1.105527922 1.093224597 312280978 amyA Lactobacillus delbrueckii subsp. bulgaricus ND02 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus delbrueckii; 0.784439681 0.790736376 0.8295303 0.850768333 0.913837308 0.822575415 0.813450206 0.924196364 0.853546261 0.815343668 0.894153607 0.894785296 0.860943174 0.869777869 0.879786418 0.827145772 302542383 amyA Streptomyces hygroscopicus ATCC 53653 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces himastatinicus; 1.077070233 1.046215275 0.992225604 1.107115159 0.969192542 1.076965411 0.994268016 1.034639052 1.033402306 1.030341886 1.023132827 1.027794301 0.939212269 0.962525887 0.883805155 1.006709352 1.066903431 1.040521138 381202978 acetylglucosaminidase Sphingobium yanoikuyae XLDN2-5 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium;species:Sphingobium yanoikuyae; 0.958029663 1.022098038 1.008973159 1.018328377 1.060816107 1.025829822 0.962597038 1.011091401 0.954710451 1.029968405 1.061587578 0.977616415 1.025706658 0.976005803 0.948479102 1.004022527 1.030644252 1.022753801 374325488 xylg Pseudomonas sp. MC1 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 1.146789852 1.036682111 1.08866169 1.130651109 1.100215175 1.067755453 1.111859062 1.136589659 1.151260832 1.080741856 1.048908907 1.136454098 1.093228711 1.054368948 1.081656434 1.109903488 1.094405612 1.086066449 142852379 arsc Aeromonas salmonicida subsp. salmonicida A449 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas salmonicida; 1.179371097 1.185975373 1.154416588 1.177503272 1.140348523 1.161936629 1.138858594 1.261666055 1.169251847 1.14807532 1.140490384 1.151750155 1.154617409 1.130530499 1.126547323 1.167220349 1.177103744 1.184440025 219996943 ppx Thioalkalivibrio sp. HL-EbGR7 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio;species:Thioalkalivibrio sulfidophilus; 1.435565379 1.423132497 1.393490856 1.403994479 1.379751994 1.389017057 1.358115265 1.368108926 1.37363106 1.369630435 1.378777091 1.399568269 1.361101295 1.335200883 1.330558414 1.352250256 1.401287473 1.349768305 297198810 pme Streptomyces sviceus ATCC 29083 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 0.932154275 0.957434661 0.940782155 0.966044066 0.959478231 0.936300393 0.940121278 0.952076669 0.952439205 0.89795631 0.923163841 0.931514565 0.880337053 0.884018164 0.870585867 0.880652036 0.941659442 0.88982523 388528791 nasa Tistrella mobilis KA081020-065 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Tistrella;species:Tistrella mobilis; 0.992511171 0.988705695 0.980668034 1.018734103 1.013320069 1.02186814 0.976329715 0.994133561 1.017350427 0.984798129 0.993457887 1.046703796 0.995458756 0.9422982 1.007517474 1.029497554 1.029191323 1.016400728 39949020 tannase_Cdeg Magnaporthe grisea 70-15 Carbon Cycling Carbon degradation Tannins superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 1.019049246 0.998904858 1.007705931 1.042474884 1.032389745 1.022495467 1.035355464 1.061926984 1.039184432 1.034157668 1.003153618 1.038585988 0.995397162 0.959116666 0.996744931 0.980010626 1.00061158 0.994776793 19070155 nifh uncultured nitrogen-fixing bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.766430507 0.836445544 0.836533336 0.822825304 0.799896083 0.846446288 0.811567133 0.811969619 0.820702638 0.815232939 0.817668467 0.820587245 0.825517597 404259649 bend Gordonia namibiensis NBRC 108229 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia namibiensis; 1.009709048 1.050568538 1.015962171 0.987671023 0.995818631 1.027648429 0.97980389 0.978894129 0.987442103 0.992414152 0.991080488 0.983601439 0.961442877 0.956183662 0.920148553 0.939130818 1.003949344 1.003188163 119469627 ppx Alteromonadales bacterium TW-7 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales; 0.873222431 0.826046834 0.849247311 0.798289649 86572034 amyA Rhodopseudomonas palustris HaA2 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 0.86416434 0.873482854 0.832504387 0.92294414 0.839374027 0.792577231 0.815466914 0.81230731 0.936557869 0.855342576 0.83522948 0.82793974 0.818436366 0.816610886 0.832137438 0.865393371 357008242 chitinase Paenibacillus elgii B69 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus elgii; 0.799629512 0.867687128 0.881115616 0.794416504 0.827642558 0.832286133 0.80975167 0.872690639 0.776625929 0.847108823 0.77922734 0.963672829 0.860761333 108460873 endochitinase Myxococcus xanthus DK 1622 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus xanthus; 1.014395667 1.052373061 1.041497469 0.993648811 1.023516259 1.126772111 1.084909348 0.992375937 0.978613784 1.062849304 1.010654789 1.012587664 1.027579352 1.011798098 1.085698783 1.02435569 1.055194866 1.077260591 262108262 actin_Stramenopiles Phytophthora infestans T30-4 Other Phylogenetic NA superkingdom:Eukaryota;order:Peronosporales;genus:Phytophthora;species:Phytophthora infestans; 0.765122919 0.810295652 0.811426346 0.83106593 0.815775702 374371799 phn Cupriavidus basilensis OR16 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus basilensis; 1.338898798 1.304672162 1.323450973 1.330195179 1.319618862 1.340700467 1.309211935 1.345838207 1.330229344 1.289110131 1.295153585 1.318225479 1.308555792 1.259287561 1.306413991 1.316986289 1.329253093 1.290504607 296128946 amyA Cellulomonas flavigena DSM 20109 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas;species:Cellulomonas flavigena; 1.173268886 1.147008081 1.182124369 1.186169431 1.160227275 1.207754356 1.175690457 1.169417734 1.151704123 1.199985878 1.173307728 1.152416792 1.123509328 1.139123346 1.111140995 1.164433131 1.148998564 1.133253533 340793646 amyA Corynebacterium variabile DSM 44702 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium variabile; 0.876726925 0.894007217 0.860715753 0.867836813 0.841172074 0.879582518 0.829329657 0.862291246 0.893521093 0.907019454 0.852357586 0.868189249 0.816880552 0.873768212 0.826147478 0.814168167 0.905999276 0.893948182 336430036 ara Lachnospiraceae bacterium 3_1_57FAA_CT1 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae; 0.92373742 0.889578407 0.895220682 0.904682854 0.927743156 0.922902536 0.897989111 0.859900897 0.895505414 0.902664901 0.918549672 0.889459663 0.879839137 0.906125755 0.870278121 0.860910686 0.921035667 0.911400746 375129927 PRI Vibrio furnissii NCTC 11218 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio furnissii; 0.792850568 0.801684566 0.767689696 0.816811483 0.822733182 0.761104556 0.852086434 0.826165408 17736812 chitinase Pseudomonas sp. PE2 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.887528081 0.87256731 0.881966827 0.906664444 0.882124179 0.902771041 0.851434108 0.886279192 0.889257422 0.914212542 0.889364638 0.868015713 0.859261542 0.891971702 0.879718892 0.893696886 0.877280556 0.906697733 315467983 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.122201992 1.119587333 1.129570913 1.118599089 1.101753243 1.167786738 1.118351178 1.105907757 1.081680729 1.101360023 1.11509935 1.104200027 1.114915421 1.07953011 1.079975689 1.086604577 1.136739581 1.105071945 306811171 SoxB uncultured bacterium Sulfur Sulfur Oxidation NA superkingdom:Bacteria; 1.001995502 1.061542063 0.988094663 1.028371015 0.98470785 0.981662709 0.954355121 0.961888695 0.990432676 0.997472936 0.953591264 1.003336569 0.971030313 0.972213937 0.943377124 0.962680723 1.019583149 1.031293024 169640156 mannanase uncultured microorganism Carbon Cycling Carbon degradation Hemicellulose 0.927768806 0.806504528 0.912928548 0.913617374 0.814870214 0.87758758 0.825327366 0.829023066 0.881799052 0.916413693 0.808072485 0.826419117 0.88842631 0.891264212 0.828166908 169793460 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.844418896 0.825032092 39968417 cutinase Magnaporthe oryzae 70-15 Carbon Cycling Carbon degradation Cutin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 0.95163966 1.017506561 0.931796857 0.971311461 0.960521196 0.990649932 0.918990205 0.972556638 0.926186736 0.961616963 0.953053026 0.970703419 0.938550629 0.985104358 1.018300309 0.93880204 0.920129899 0.957165786 304405342 amyA Paenibacillus curdlanolyticus YK9 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus curdlanolyticus; 0.933620116 0.891805983 0.877048935 0.95678613 0.920094742 0.919592758 0.926383937 0.939803206 0.939468508 0.931149896 0.911051645 0.934181693 0.896417948 0.905598995 0.886285611 0.918678073 0.901274476 0.944514665 307544869 urec Halomonas elongata DSM 2581 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas;species:Halomonas elongata; 1.1868724 1.182367929 1.14944603 1.162845545 1.139798608 1.167190764 1.155450894 1.146239932 1.142551861 1.165958252 1.150286329 1.156735497 1.145574641 1.111763891 1.099170644 1.147280869 1.176501008 1.17339922 108463501 nbac Myxococcus xanthus DK 1622 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus xanthus; 0.785920339 0.854623517 0.822834956 0.862589924 0.840172811 0.814346897 0.86385682 0.851006413 209960617 nosz Rhodospirillum centenum SW Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum centenum; 1.001829374 0.973395703 1.038899532 1.006257206 1.041057957 1.034594898 1.041718864 1.043682017 1.029292238 1.020215262 1.051943669 1.020752746 0.993746883 1.008329119 1.028186289 0.982905559 1.037916625 1.058981256 259346398 GAPDH_Calvin Silicibacter sp. TrichCH4B Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 0.890748017 0.814249225 0.841996889 0.886929202 0.891312243 0.841252933 0.828485843 0.806880816 0.866377098 0.863696161 0.864646094 0.851518152 0.828610284 0.846145226 0.850357212 29652600 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.823127611 0.836025029 0.786080134 0.852835646 0.788016919 0.822509629 0.845188664 0.864611536 229378649 tktA Oxalobacter formigenes HOxBLS Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Oxalobacter;species:Oxalobacter formigenes; 1.064201463 0.99653654 1.020597916 1.037308415 1.010937314 1.047008711 1.006863148 1.053840266 1.011511332 1.014530415 0.979292279 1.010414592 0.974828573 0.932420911 0.968914055 0.948550378 1.022705964 1.017896249 129279082 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.800020349 0.832509791 0.869071214 0.819623279 0.848462464 0.896384552 56312952 cysI Aromatoleum aromaticum EbN1 Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 0.941375874 0.960923851 0.905420449 0.884101142 0.870550599 0.837218546 0.836970562 0.940058934 0.878328193 0.863979091 0.852553022 0.846915636 0.871363338 0.830047302 0.935687398 0.907556345 363415775 GAPDH_Calvin Acidovorax sp. NO-1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 1.058655721 1.012628156 1.049259316 1.09205895 1.04994793 1.044837515 1.021533653 1.05484229 1.064396598 1.051251308 1.037041435 1.099613139 1.009821291 1.066154919 1.055924073 1.059840453 1.054893062 1.021857091 330980042 chitinase Pseudomonas syringae pv. aptata str. DSM 50252 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae; 0.818018671 0.81691983 157780230 hsp90_Choanoflagellida Salpingoeca infusionum Other Phylogenetic NA superkingdom:Eukaryota;order:Choanoflagellida;family:Salpingoecidae;genus:Salpingoeca; 1.132922445 1.090725949 1.103683628 1.149903326 1.143778658 1.134651649 1.157140479 1.154722323 1.129110635 1.11555679 1.122648896 1.130823175 1.099342827 1.079369441 1.06792852 1.126135372 1.16555668 1.082992911 221484896 gdh Toxoplasma gondii GT1 Nitrogen Ammonification NA superkingdom:Eukaryota;phylum:Apicomplexa;class:Coccidia;order:Eucoccidiorida;family:Sarcocystidae;genus:Toxoplasma;species:Toxoplasma gondii; 1.386873475 1.350782079 1.327108484 1.356356555 1.318212431 1.379136434 1.283150949 1.327049021 1.320586241 1.324505691 1.312766848 1.341723703 1.309689039 1.297536019 1.299607686 1.315144865 1.372305875 1.322995086 256688534 glucoamylase Kytococcus sedentarius DSM 20547 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dermacoccaceae;genus:Kytococcus;species:Kytococcus sedentarius; 1.16663111 1.083075938 1.086349729 1.066940718 1.109957207 1.131841293 1.082962956 1.087691959 1.078138617 1.109267751 1.081820553 1.114211508 1.076456908 1.117099782 1.069730456 1.119263338 1.073849152 1.127925879 206679564 mer Rhodobacterales bacterium HTCC2083 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 0.815239538 0.815669397 0.855490902 0.897267945 0.827225167 0.814383338 0.84201509 0.873767278 0.911280057 0.880526682 0.842989011 0.835301085 0.83708734 0.865647279 0.851397815 0.852099872 0.803139506 0.854662293 317507404 cutinase Segniliparus rugosus ATCC BAA-974 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Segniliparaceae;genus:Segniliparus;species:Segniliparus rugosus; 1.235454072 1.245609918 1.181315759 1.167908881 1.203022272 1.238665263 1.182686574 1.129804853 1.183461461 1.250141582 1.212075338 1.204041635 1.16817841 1.170428584 1.140945525 1.189579211 1.184303191 1.229436074 325526570 bphF1 Burkholderia sp. TJI49 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 0.978185517 0.974013606 0.937055017 0.956236684 0.907878953 0.931356623 0.887311932 0.993493999 0.940167915 0.905228362 0.908138442 0.996243436 0.882269602 0.871985017 0.850009432 0.8992206 0.950562312 0.951280406 219670117 dsra Desulfitobacterium hafniense DCB-2 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 0.947186679 1.046564892 0.951779989 1.017936209 0.920150562 0.903903308 0.947604619 0.952633649 0.971160573 0.958355187 0.926060811 0.953343218 0.893073972 0.938377738 0.83813269 0.869030475 0.966565873 0.932451312 381388342 ppk Phycisphaera mikurensis NBRC 102666 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Planctomycetes;class:Phycisphaerae;order:Phycisphaerales;family:Phycisphaeraceae;genus:Phycisphaera;species:Phycisphaera mikurensis; 1.123132674 1.116613681 1.092108389 1.108973787 1.112323388 1.11618882 1.10827445 1.104920607 1.097703852 1.082513326 1.090849607 1.118772421 1.065951858 1.060952605 1.05104056 1.061512015 1.100376557 1.09203448 225194136 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.888563358 0.864733174 0.872532182 0.892255839 0.899054052 0.907492358 0.891548497 0.878827575 0.916978126 0.863247825 0.874220995 0.840575986 0.87661635 0.817426968 0.850095743 0.835369832 0.894990941 0.903298694 68510358 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.104170747 1.134883855 1.121280304 1.095494067 1.087670734 1.136603414 1.076531506 1.084240421 1.075626202 1.112148884 1.08091566 1.109962489 1.062138873 1.111961834 1.057825155 1.087213212 1.099633927 1.122278989 349779258 GAPDH_Calvin Thioalkalimicrobium aerophilum AL3 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Thioalkalimicrobium;species:Thioalkalimicrobium aerophilum; 0.987113876 1.022112461 0.950151769 1.063450475 1.037186119 0.95352411 1.058839308 1.031723862 1.017788729 1.005963748 1.024669247 1.041027671 1.038093125 0.959884553 0.962528615 1.022636918 0.984834405 0.978784116 344690010 rubisco uncultured bacterium Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria; 0.839550803 0.860416535 0.886747143 0.90014347 0.874952829 0.849964279 0.905202488 0.901942084 0.824288305 0.841015611 0.849525348 0.834081464 0.859888627 0.883633685 93354571 catechol Ralstonia metallidurans CH34 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 1.105910478 1.105772707 1.074829176 1.108275157 1.081948431 1.084096662 1.107177429 1.111048261 1.09861155 1.091056948 1.050069402 1.094945488 1.069357423 1.068312263 1.040762975 1.059072679 1.086372793 1.12077827 388566958 ppx Hydrogenophaga sp. PBC Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Hydrogenophaga; 1.1441388 1.106581839 1.122192732 1.080103063 1.090462116 1.106249958 1.056755064 1.064415572 1.12739748 1.146586318 1.094123921 1.094405282 1.050559806 1.073688089 1.015603639 1.050671485 1.13827238 1.131894881 219946927 exaa(moxf) Methylobacterium nodulans ORS 2060 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 1.047241153 1.079803789 1.093349258 1.075314957 1.001745756 1.06386083 1.001252533 1.016875372 1.047377089 1.047745692 1.021028843 1.019665499 1.017281783 0.989721881 0.952796538 1.025183619 1.057994726 1.002462535 156151286 amyA Geobacillus sp. NBRC 15315 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 0.916712488 0.887816043 0.871914982 0.89706492 0.867064979 0.872399662 0.861244575 0.914561445 0.877648183 0.908450441 0.861148107 0.937535488 0.860910702 0.873421202 0.873825935 0.885706259 0.885688558 0.904716498 66474955 cmua Hyphomicrobium sp. LAT3 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium; 1.033235302 1.077618352 1.031864635 1.119838713 1.017968207 1.091176459 1.011364586 0.97467969 0.999483691 1.043010419 1.011903067 1.041308731 0.998677072 1.039035771 1.016292822 1.011456944 1.060246263 1.081362838 56787886 pcag Novosphingobium subarcticum Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 0.865676408 0.953752804 0.825471265 0.920364265 0.884528968 0.906120378 0.884849841 0.877278494 0.920896048 0.85581557 0.920102721 0.841478634 0.90417085 0.930609654 45543 rubisco Prochlorothrix hollandica Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Cyanobacteria;order:Prochlorales;family:Prochlorotrichaceae;genus:Prochlorothrix; 0.824492227 0.801574758 0.812840336 0.796126139 151562117 TIM Ochrobactrum anthropi ATCC 49188 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum anthropi; 1.15780002 1.141253184 1.094818186 1.128907963 1.026186398 1.149282101 1.079107968 1.10196659 1.098486293 1.118237583 1.046521224 1.07532974 1.040709402 1.074216636 1.011473086 1.069292945 1.161137189 1.156261821 85706023 soxY Roseovarius sp. 217 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 0.941467739 0.924025907 0.92782521 0.93128895 0.843837951 0.926536014 0.839917483 0.923863535 0.948384576 0.90701843 0.896969751 0.888478533 0.828478234 0.886208406 0.854554786 0.886461136 0.955047451 0.967748308 77379200 mer uncultured bacterium Metal Homeostasis Mercury Detoxification superkingdom:Bacteria; 1.276624207 1.28891094 1.221675343 1.22809552 1.233345024 1.237315586 1.218146047 1.243865504 1.264198373 1.239529256 1.239186336 1.233830685 1.202529314 1.291759938 1.400448616 1.201346817 1.249592597 1.261916383 302460003 amyA Streptomyces himastatinicus ATCC 53653 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces himastatinicus; 0.919425969 0.929828915 0.944634392 0.971002926 0.862225396 0.950050661 0.851052488 0.900886385 0.913236837 0.936119054 0.854028364 0.923087343 0.860703814 0.894088693 0.859160672 0.903153609 0.948474254 0.938142535 68348432 urec Pseudomonas fluorescens Pf-5 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 0.91595388 0.893228066 0.867613643 0.921139216 0.885417887 0.837898037 0.880954158 0.907753529 0.8479689 0.841645353 0.859019315 0.874578552 0.844737852 0.957659449 0.905114463 42556011 mannanase Cellvibrio mixtus Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio; 0.756576351 0.805945217 14090317 dsra Desulfovibrio longus Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 1.025064942 0.960606517 0.978131775 1.027627336 0.996503029 1.049870149 0.990230856 1.046322709 1.034546102 1.040417755 0.996298996 1.012295691 0.979502187 0.969670665 1.060030458 0.996618344 1.026433631 0.995242871 317506445 terc Segniliparus rugosus ATCC BAA-974 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Segniliparaceae;genus:Segniliparus;species:Segniliparus rugosus; 0.858053211 0.894270693 0.870929607 0.922843009 0.833799899 0.842175695 0.805241311 0.867118457 0.872007145 0.859393629 0.837636689 0.87767945 0.867335931 0.838465965 0.849935753 0.876242114 0.872320228 381361553 nasa Bradyrhizobium sp. S23321 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.922054387 0.932016027 0.926116422 0.930809032 0.884902412 0.905774099 0.879309507 0.919711727 0.923613678 0.916559095 0.891038508 0.907966881 0.890117562 0.918125164 0.891825329 0.883311769 0.960068805 0.942861237 119960118 dsrB uncultured prokaryote Sulfur sulfite reduction NA 1.167258459 1.142099613 1.131958277 1.152755963 1.111655296 1.142356431 1.087642254 1.130028178 1.12794416 1.11542504 1.112982637 1.126593603 1.087727206 1.109786333 1.056478527 1.16755277 1.166300569 1.138665361 315588320 xylj Intrasporangium calvum DSM 43043 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Intrasporangium;species:Intrasporangium calvum; 1.127238128 1.12730228 1.122868215 1.115220299 1.110821225 1.125993088 1.112516133 1.128015605 1.087027789 1.088694139 1.109495993 1.096208559 1.071896026 1.07547083 1.035784185 1.045153893 1.109062101 1.113931978 32527393 catb Ralstonia eutropha Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 1.061555973 1.028582374 1.020367043 1.051159219 1.024811691 1.030953652 1.027056749 1.011644602 1.037163553 1.059193627 1.024470367 1.035389963 0.997880181 1.014276374 0.946344878 1.000426181 1.037173225 1.025035886 283475012 vana Xanthomonas albilineans Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas; 0.789334028 0.918557526 0.863490962 0.800722423 0.813904983 0.775881028 0.868162303 113876349 xylanase Sinorhizobium medicae WSM419 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 1.080781247 1.053281242 1.093498986 1.128503977 1.127412234 1.059657835 1.101952587 1.123584607 1.078487584 1.045186052 1.019530124 1.105531167 1.066854978 0.942635515 0.979818403 1.080876752 1.054018708 1.057381368 306529525 ppx Dickeya dadantii 3937 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya dadantii; 0.78389965 0.815907615 0.812325766 0.809062187 114339358 cysI Maricaulis maris MCS10 Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Maricaulis;species:Maricaulis maris; 1.300044245 1.27552463 1.271389922 1.271826638 1.272679319 1.285381416 1.282857732 1.332968177 1.28790999 1.238915413 1.280628264 1.276346381 1.284664556 1.224217522 1.24592771 1.247209397 1.276078685 1.247233356 300779640 arsc Corynebacterium genitalium ATCC 33030 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium genitalium; 0.922882607 0.868254367 0.923983379 0.918104923 0.901818857 0.86873136 0.936486656 0.940532549 0.933813812 0.90143609 0.842205061 0.917989837 0.84194682 0.831823881 0.840012858 0.925740248 0.935366484 422314089 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.814753925 0.822922891 0.86599956 0.900377115 11691635 arsc Pseudomonas putida Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 1.165317075 1.101766796 1.148143181 1.184141209 1.157390341 1.158431652 1.162889412 1.175427461 1.158592539 1.13771071 1.153044756 1.15980463 1.154478706 1.108022675 1.102417688 1.126467178 1.19174621 1.085449601 118581663 amyA Pelobacter propionicus DSM 2379 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Pelobacteraceae;genus:Pelobacter;species:Pelobacter propionicus; 0.926724879 0.988720468 0.988115465 1.062095175 1.054487793 1.015447827 0.984245208 1.028033747 0.96968435 1.010626263 0.995350892 1.050418789 1.004281844 0.966971077 0.999528998 1.032908417 0.926859769 0.9862765 27352383 ppx Bradyrhizobium japonicum USDA 110 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 0.799469369 0.867282688 0.87235695 0.877202863 0.83839781 0.84535416 0.84180891 0.809736053 0.878541949 0.836343673 154284866 nirk Ajellomyces capsulatus NAm1 Nitrogen Denitrification NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces capsulatus; 0.908414678 0.932381257 0.885784772 0.947630986 0.873064746 0.89062213 0.856461748 0.885594257 0.88740159 0.900580985 0.850640261 0.910477465 0.860418399 0.841483108 0.833205578 0.901378622 0.940714196 0.928613409 15837420 endoglucanase Xylella fastidiosa 9a5c Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xylella;species:Xylella fastidiosa; 0.782703295 0.800886559 71361369 pmoa uncultured methanotrophic bacterium Carbon Cycling Methane Methane oxidation superkingdom:Bacteria; 0.779678879 0.804390039 0.815315711 0.827207838 0.815394727 0.821757618 0.805534175 256380066 amyA Actinosynnema mirum DSM 43827 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Actinosynnema;species:Actinosynnema mirum; 1.312380059 1.290773246 1.291759636 1.264882541 1.284129782 1.322793417 1.265689166 1.289728332 1.280574667 1.293474394 1.279887296 1.278727378 1.263053591 1.268563469 1.21073516 1.257336763 1.29987086 1.281250247 407787561 pcpe Celeribacter baekdonensis B30 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Celeribacter;species:Celeribacter baekdonensis; 0.985931278 0.981575865 0.925603867 0.997033678 0.941144413 0.988122438 0.997326505 1.018515983 0.99129995 0.969206637 0.92412404 0.974668526 0.90567001 0.906590089 0.906462258 0.917917146 0.943785931 0.993909653 187483925 cellobiase Exiguobacterium sp. AT1b Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium; 1.118599662 1.107182263 1.161239977 1.108375504 1.111284877 1.107879461 1.049913896 1.057463079 1.098941258 1.137091088 1.114266637 1.119443853 1.086962101 1.092733671 1.051871644 1.067876338 1.099565094 1.096687943 358063743 atza Clostridium hathewayi WAL-18680 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hathewayi; 1.008149292 0.982485882 0.987671699 1.021012814 0.978410891 0.976528089 0.970679601 0.993785125 0.990129677 0.990245793 0.964897228 1.012208272 0.959904359 0.966514955 0.979870738 0.998208942 1.001810283 0.993162754 311282912 amyA Pseudomonas fluorescens WH6 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 0.886024804 0.937163394 0.962548743 0.951834559 0.935976328 0.941620506 0.969481976 0.947433012 0.925427815 0.923110222 0.945190367 0.93082881 0.844836939 0.892370877 0.874695113 0.849044907 0.960230172 0.946430518 305859498 pectinase (pectate_lyase) Paenibacillus polymyxa E681 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus polymyxa; 0.891346253 0.890661939 0.884829987 0.848086462 1.019284885 0.867667554 0.851831558 0.834963721 0.89189712 0.858507837 0.911061763 0.906597176 0.866263096 0.871257454 0.833495917 0.928791968 0.861661389 0.874209993 395773716 bphd Streptomyces acidiscabies 84-104 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces acidiscabies; 0.934101175 1.022107023 0.892490025 0.911835159 0.907615362 0.907461405 0.894811801 0.870895194 0.87721711 0.948781348 0.88275011 0.961936758 0.854943629 0.82891414 0.824189423 0.894994966 0.862589565 0.879271989 163778283 gdh Monosiga brevicollis MX1 Nitrogen Ammonification NA superkingdom:Eukaryota;order:Choanoflagellida;family:Codonosigidae;genus:Monosiga;species:Monosiga brevicollis; 1.214983952 1.224012359 1.164532682 1.207718136 1.139487614 1.186295278 1.17699984 1.185400633 1.174060155 1.196862026 1.138936852 1.194159762 1.153767944 1.187710519 1.078909428 1.139365194 1.207851252 1.185344894 121590129 fccab Halorhodospira halophila SL1 Sulfur Sulfide Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Halorhodospira;species:Halorhodospira halophila; 0.991996656 0.907149551 0.960564095 1.030009807 0.882965188 0.913699641 0.988482279 1.065578159 1.142399723 0.897231327 0.993094565 0.997574022 0.906135282 0.910421099 0.899001005 0.910103724 0.976798291 0.879553294 38427002 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.092485253 1.10334502 1.098121271 1.100710341 1.08884279 1.118338214 1.085355724 1.087399913 1.112952737 1.076758085 1.103559363 1.106270743 1.071321726 1.059932212 1.045795394 1.08459905 1.107753914 1.108388514 238586988 phenol_oxidase Moniliophthora perniciosa FA553 Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Marasmiaceae;genus:Moniliophthora;species:Moniliophthora perniciosa; 0.823329608 0.94499507 0.91992978 0.840375403 0.833149962 0.830721172 0.818743608 0.785493718 0.808292429 0.813568198 0.861136867 0.871797836 347531909 ppx Roseburia hominis A2-183 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Roseburia;species:Roseburia hominis; 0.81655562 0.841142413 0.836724425 0.861186444 0.801868017 0.82601113 327192977 poba Rhizobium etli CNPAF512 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 1.028282475 0.965106075 0.936799645 0.982123506 0.951558935 1.003665259 0.978890657 1.001288109 1.007327906 0.953117614 0.93578641 0.978628329 0.980231187 0.920761353 0.890693687 0.932894398 0.985478291 0.985318704 291072253 CsoS1_CcmK Citrobacter youngae ATCC 29220 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter youngae; 0.963636008 0.917011712 0.891273957 0.89425866 0.893220883 0.869960314 0.886761331 0.890839447 0.901207824 0.886801415 0.875586273 0.869241891 0.907341458 0.96513179 116621213 ara Solibacter usitatus Ellin6076 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 1.061261934 1.024573372 1.085467725 1.075431881 0.962853306 1.00107867 0.957924194 1.008146788 1.05882218 1.040551786 1.010132042 1.037189638 0.981301949 0.971729723 0.974719743 1.047595103 1.066854349 1.019868919 109454988 nirs Roseobacter denitrificans OCh 114 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter denitrificans; 0.936385557 0.926261667 0.83951853 0.974842295 0.820222458 0.919377181 0.831456866 0.990267119 0.95184269 0.899058266 0.839295548 0.89894672 0.839520866 0.87920027 0.875740983 0.968448154 1.019315635 365899654 linb Bradyrhizobium sp. STM 3843 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.972248782 0.978479016 0.987987778 0.971060804 0.962285388 0.983494536 0.932605167 0.885887276 0.969789003 0.92933708 0.91098776 0.944288402 0.92515822 0.932346781 0.977480021 0.893477995 0.999965037 0.992197246 256669450 glucoamylase Streptomyces sp. AA4 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 1.190480169 1.188779442 1.16402828 1.179344313 1.187385547 1.186406265 1.181740028 1.183155151 1.195175797 1.156746438 1.158643514 1.210324605 1.132643853 1.132418703 1.110936822 1.159723545 1.150852324 1.137143133 124257909 tutfdg Desulfotomaculum sp. Ox39 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum; 0.798860411 0.786535451 365893161 catechol Bradyrhizobium sp. STM 3809 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 1.0128196 1.022185229 1.042864744 1.005560031 1.071177384 1.125046207 1.019837203 0.970085858 0.965252103 1.020367232 0.955121791 1.007055435 1.003509199 1.038471537 1.120692432 1.040885655 1.141568676 1.096798444 217507970 arylest Thauera sp. MZ1T Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Thauera; 0.830377279 0.803001739 0.87401174 0.851689772 0.804969714 17431447 narg Ralstonia solanacearum Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 0.894105335 0.930368536 0.874638221 0.934505714 0.960719268 0.921065049 0.878040077 0.825201533 0.89492157 0.872791729 0.859833402 0.899890257 0.886977682 0.84499197 0.822721377 0.93267903 0.878071966 0.963132607 29466016 norb uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.05257187 1.000269413 1.038506829 1.087404802 1.040006864 1.001422163 0.987512077 1.005928564 1.050297013 0.998676341 1.024683437 1.049881266 0.994385682 0.96100449 1.082649529 0.969454861 1.056951302 1.002114152 299134160 pgk Afipia sp. 1NLS2 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Afipia; 0.950069561 1.114573996 0.828997072 0.779929303 0.888851143 0.823417008 0.846232303 0.868976858 0.845835399 0.865951332 0.89750497 317114501 AcnA Thermovibrio ammonificans HB-1 Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Desulfurobacteriaceae;genus:Thermovibrio;species:Thermovibrio ammonificans; 0.904552942 0.872121397 0.816214538 0.906774422 0.847529939 0.867456501 0.848024394 0.850482469 0.920082802 0.877442867 0.860964011 0.83630199 0.850455123 0.836820193 0.822539448 0.869068726 0.882209287 157371755 arsc Serratia proteamaculans 568 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia proteamaculans; 0.879088279 0.895398944 0.797439207 0.891131193 0.841411897 0.844449483 0.833680599 0.8618183 0.859454996 0.813451538 0.857173434 0.841015275 0.891902601 197087808 phenol_oxidase Geobacter bemidjiensis Bem Carbon Cycling Carbon degradation Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter bemidjiensis; 0.855107904 0.803583376 0.845456798 0.896154802 0.817085786 0.833212421 0.841181625 0.862963188 0.88190652 0.799472696 0.867942494 389792854 arylest Rhodanobacter fulvus Jip2 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Rhodanobacter;species:Rhodanobacter fulvus; 1.335037217 1.312725558 1.291808388 1.296700054 1.270982942 1.314954354 1.243302621 1.265285943 1.285366725 1.284722687 1.275339116 1.299060197 1.262203947 1.257189826 1.237769769 1.263094324 1.308712025 1.301876728 195945012 nfsb_2 Burkholderia cenocepacia J2315 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cenocepacia; 1.356827756 1.344129334 1.35446083 1.287428883 1.318070841 1.355074081 1.287201613 1.289989842 1.287018245 1.331066293 1.325872809 1.295495013 1.287068266 1.295443122 1.339490663 1.297608757 1.322446421 1.327786848 227819493 poba Sinorhizobium fredii NGR234 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium fredii; 0.953038364 0.939290253 0.977584594 0.956241898 0.903469147 0.955389708 0.889780144 0.907851672 0.961856458 0.95030547 0.932499924 0.918847709 0.890595628 0.906139547 0.899318532 0.923507953 0.959983051 0.946561086 256393151 ophc Catenulispora acidiphila DSM 44928 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 0.822562205 0.861068135 0.840792341 0.814815092 0.854521667 0.812208844 0.800539409 0.820251376 0.866959341 41367208 phenol_oxidase uncultured Basidiomycota Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota; 0.845744036 0.798030206 0.817062978 0.810990846 284448026 nitrate_reductase uncultured eukaryote Nitrogen N Assimilation NA superkingdom:Eukaryota; 0.926988405 0.907928136 0.951196926 0.930707138 0.921192416 0.904660705 0.949280822 0.866685935 0.911059996 0.984473074 0.965619714 0.943552248 0.86469622 0.96488055 0.864603832 0.873863834 0.896642733 0.883859162 328921299 bphd gamma proteobacterium IMCC3088 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 1.090005685 1.091534292 1.040721025 1.048031512 0.982592742 1.071233951 0.995980772 1.02900199 1.040094209 1.045651279 1.022391597 1.042851943 1.001980326 1.039145169 0.96455515 1.028426389 1.090679878 1.086182396 91699576 xylc Polaromonas sp. JS666 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 0.770115405 0.830888451 0.83927781 0.850721058 0.804281807 295111808 CsoS1_CcmK Synergistetes bacterium SGP1 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Synergistetes; 1.19061981 1.146735521 1.125749685 1.157792869 1.188795311 1.155148523 1.151010397 1.138241496 1.15143265 1.139115423 1.132157556 1.134862539 1.126108864 1.088057107 1.081325351 1.116397144 1.175189925 1.151233333 99083295 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.818434663 0.802371553 0.784143082 0.845507011 0.805637295 0.778450014 0.812571313 0.838722227 0.800229147 0.811870164 0.893030509 0.847708064 330828426 nitro Aeromonas veronii B565 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas veronii; 1.053098823 0.992665706 1.025814944 1.051408125 1.047138266 1.01414768 1.044524741 1.062416256 1.025813844 1.027221386 1.020329031 1.044415563 1.005559476 0.960529786 0.959249649 0.964483213 1.048487706 0.999879162 158251630 aps_apra uncultured archaeon Sulfur adenylylsulfate reductase NA superkingdom:Archaea; 0.830707124 0.839160197 0.860908 0.827068819 0.846270066 0.9368392 0.850087979 0.830777332 0.827384037 0.80984542 0.802986875 0.826255304 0.835449613 385278729 limeh gamma proteobacterium BDW918 Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 0.827218051 0.801009702 0.807940658 0.827717846 0.863295139 0.848692353 0.799065272 0.760201472 0.84899815 152979850 cysI Janthinobacterium sp. Marseille Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Janthinobacterium; 0.875597715 0.822114314 0.841499858 0.822219912 0.841870804 0.836643176 0.845488562 0.817689003 0.822975464 0.810802174 0.844753417 0.869094168 55978148 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.92431017 0.897509748 0.930489421 0.954505395 0.922462452 0.913905775 0.937451522 0.923848501 0.940632782 0.922521313 0.914048662 0.967316078 0.913371658 0.927168772 0.873907578 0.928802897 0.944136324 0.928159203 340525921 amyA Amycolatopsis mediterranei S699 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 1.226658215 1.199393492 1.181468713 1.250549469 1.238252212 1.218298824 1.229293869 1.229314559 1.210639137 1.216681868 1.186816043 1.192060976 1.22837234 1.179607423 1.176741463 1.206353206 1.230799613 1.202850881 59044731 pectinase (pectate_lyase) uncultured bacterium Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria; 1.186481273 1.114122638 1.14302703 1.154043769 1.1554879 1.167214938 1.173383283 1.172291791 1.156231924 1.135453031 1.162526044 1.158232075 1.156675631 1.110378005 1.137749088 1.10544677 1.171963927 1.099664495 2598192 cellobiase Cochliobolus heterostrophus Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Cochliobolus; 1.195546113 1.158548138 1.182025231 1.193735875 1.13704475 1.142199003 1.144276035 1.17519614 1.178511162 1.171450608 1.15446944 1.197015676 1.136806194 1.138832798 1.163993246 1.160380912 1.177651516 1.155267429 254042802 ppx Hirschia baltica ATCC 49814 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Hirschia;species:Hirschia baltica; 1.07364287 0.976070918 0.979091451 0.964636368 1.063531539 0.984582158 1.019751397 0.954021667 0.97470282 0.972845004 0.954671259 0.964044131 0.958424742 0.970943463 0.89970806 0.913298367 0.942878603 0.98026186 164508660 nosz uncultured organism Nitrogen Denitrification NA 0.892780592 0.913652691 0.825490208 0.84029784 0.871091584 0.930330125 0.938967855 0.855737808 0.833507089 0.944020247 0.91786704 0.865187835 0.87819727 0.867945349 0.837316281 0.875485772 0.895378705 0.888988869 297196218 cpnc Streptomyces pristinaespiralis ATCC 25486 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces pristinaespiralis; 0.904283452 0.87920245 0.831849291 0.872531844 0.850548761 0.867906771 0.862025572 0.857200313 0.82015373 0.830132336 0.832153467 0.847371133 0.874566178 0.849493921 209401906 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.997390311 0.947566774 0.950112567 0.979055452 0.942333304 0.95735427 0.967877388 0.984165618 0.949890317 0.969859845 0.953967088 0.964343852 0.925048791 0.942738942 0.907156556 0.934880853 0.930577557 0.944863436 359733809 cysJ Rhodococcus pyridinivorans AK37 Sulfur Reduction NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus pyridinivorans; 0.955314762 0.939918986 0.88922349 0.952583598 0.903482743 0.957330564 0.9003718 0.904886373 0.908425111 0.880960185 0.891074272 0.936404444 0.888311756 0.899530508 0.915562951 0.871887308 0.941814719 0.932932242 238712875 cysJ Yersinia bercovieri ATCC 43970 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia bercovieri; 1.284284253 1.21405988 1.275505702 1.286770521 1.262817058 1.282401457 1.268063394 1.289262232 1.273211268 1.235524964 1.237434629 1.263268373 1.237810924 1.208859135 1.249043571 1.24017978 1.273278417 1.203258588 2130622 norb Rhodobacter sphaeroides Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter; 0.998929605 0.967465693 0.944745718 0.996680845 0.968089843 0.953480631 0.958568807 0.976509024 1.001609407 0.994336989 0.952362823 0.98761732 0.906116522 0.925426568 0.879159897 0.900607878 0.959877293 0.910336287 237800099 nitro Pseudomonas syringae pv. oryzae str. 1_6 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas coronafaciens; 0.960546924 0.913961699 0.92078153 0.886019223 0.84354509 0.868691589 0.812410606 0.87131428 0.916124343 0.951372492 0.867334658 0.901712359 0.896084555 0.9223704 0.878833407 0.838652368 0.934928565 0.95814001 226094243 chitinase Brevibacillus brevis NBRC 100599 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Brevibacillus;species:Brevibacillus brevis; 0.875482774 0.86556819 0.846941093 0.876647593 0.894342513 0.811457046 0.840676448 0.830199219 0.890168009 0.836244728 0.83387782 0.855871552 0.839116842 0.846364783 0.846548226 0.853184566 0.882763477 193226061 catechol Cupriavidus taiwanensis Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus; 1.016336093 1.032149703 0.937232455 1.046055633 0.920343191 0.970696021 0.923013567 0.96403105 1.027190482 0.999990117 0.952999609 0.945130814 0.862091752 0.948080781 0.894862109 0.938684803 1.019204436 1.016252625 381196391 PRI Acinetobacter lwoffii WJ10621 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter lwoffii; 0.94183927 0.904836132 0.865609606 0.888548734 0.895242241 0.881179087 0.931691202 0.87904812 0.871475738 0.944841648 0.917163703 0.865166382 0.811726264 0.803987648 0.833303866 0.883572918 0.912592979 262309429 arylest Acinetobacter lwoffii SH145 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter lwoffii; 0.811313465 0.828013502 0.870839379 0.924857243 0.899824619 0.888070619 0.917266176 0.875398976 0.860436152 0.93373831 0.869630531 0.893370454 0.890277467 0.847821641 0.865374436 0.92376646 0.855524349 163796360 tktA alpha proteobacterium BAL199 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 1.050738197 1.056186702 1.021831924 1.055457546 1.029215849 1.009491901 1.024073342 1.045611633 1.030598916 1.003877842 1.024661748 1.049809951 0.974655417 0.986628164 0.958678793 0.988217911 1.044334199 1.028130541 353193788 bphd Mycobacterium rhodesiae JS60 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 0.865263892 0.945822313 0.858867005 0.934069949 0.894853779 0.926986807 0.900924599 0.917005704 0.87020768 0.913902462 0.827840321 0.870179561 0.871675 0.876022018 0.847403928 0.903580038 0.922949353 0.922645655 296164876 amyA Mycobacterium parascrofulaceum ATCC BAA-614 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium parascrofulaceum; 1.197923978 1.192771372 1.191699213 1.186646784 1.167438094 1.216992449 1.166413718 1.185069696 1.177937315 1.158679069 1.168368516 1.183834686 1.159854535 1.168832917 1.135735772 1.181612693 1.218123164 1.176881554 325536974 vana Xanthomonas vesicatoria ATCC 35937 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas vesicatoria; 1.260602422 1.258143468 1.210868935 1.240894492 1.223366673 1.268444834 1.201506037 1.205864683 1.224731229 1.23550191 1.212960197 1.218629027 1.175731253 1.223116714 1.187643121 1.21482946 1.25988783 1.262530074 37726810 dsra uncultured prokaryote Sulfur sulfite reduction NA 0.850031122 0.813163964 0.813577795 0.858447378 71849037 catechol_b Dechloromonas aromatica RCB Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Dechloromonas;species:Dechloromonas aromatica; 1.147638323 1.120765541 1.122899901 1.131588586 1.119520599 1.120482829 1.087435896 1.124556913 1.105462564 1.085436823 1.090150848 1.111938777 1.106253507 1.074730926 1.114144729 1.107843779 1.146676269 1.105060156 345858810 CsoS1_CcmK Desulfosporosinus sp. OT Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfosporosinus; 0.836809331 0.787361463 0.855120385 0.923964918 0.871998759 0.786410953 0.898590158 0.912322543 0.917998212 0.84692696 0.855691908 0.907600542 0.833237148 0.94726461 0.879151075 0.88884678 0.862795117 259476462 amyA Geobacillus stearothermophilus Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 0.808694359 0.851311374 363423220 arsc Rhodococcus pyridinivorans AK37 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus pyridinivorans; 1.046806049 1.040388867 1.021452605 1.037431276 0.997342757 0.976344756 0.979871589 0.975534751 0.985515803 1.003611119 1.012908668 0.998649333 0.985481017 0.97204717 0.914850512 0.935769557 0.976773948 1.053381849 270512542 amyA Streptosporangium roseum DSM 43021 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 0.799846877 0.836387821 0.779582784 0.832049536 0.837108223 355670958 CsoS1_CcmK Clostridium citroniae WAL-17108 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium citroniae; 0.917893464 0.941492018 0.876822169 1.008629488 0.881135823 0.919617875 0.869052732 0.886572004 0.90377357 0.945627015 0.828848218 0.882435553 0.91610257 0.886296491 0.839976323 0.882220793 0.929762013 0.953099882 121611522 tfth Verminephrobacter eiseniae EF01-2 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 1.017676251 1.08031539 0.987828309 1.029624587 1.006070495 1.059663112 0.975749424 1.000241885 0.992991917 1.044377 1.016633178 1.03153168 1.015623916 1.017278462 0.985528003 1.00607782 1.016823525 1.048304578 388276153 one_ring_12diox Pseudomonas sp. M47T1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.80438216 0.799043733 0.812040883 0.840950941 0.883863248 0.862337466 0.8470189 0.852521453 0.828003626 0.847765063 0.811683592 0.796448991 324031282 CsoS1_CcmK Clostridium sp. D5 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium; 0.826951183 0.948582263 0.839684689 0.875188947 0.912888849 0.918906276 0.880015104 0.814728339 0.889715662 0.898747193 0.945262741 0.861327713 0.965054628 0.862794536 0.813725602 0.873051422 0.955060757 0.832969929 118571390 bphF1 Mycobacterium ulcerans Agy99 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium ulcerans; 0.897448245 0.914622568 0.921452042 0.887261882 0.91692706 0.953580637 0.867269716 0.905706362 0.864565926 0.923436251 0.844452134 0.865880184 0.888089796 0.862891644 0.866000127 0.862731497 0.908911421 0.90733264 86565791 xamo Frankia sp. CcI3 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 1.054732539 1.053241852 1.06012105 1.07520923 1.079016585 1.066322108 1.060841709 1.079513517 1.065027029 1.06696318 1.063001375 1.049604872 1.011611645 0.989753646 0.940840058 0.994535681 1.081823429 1.044054911 257203551 ara Roseburia intestinalis L1-82 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Roseburia;species:Roseburia intestinalis; 0.985048851 0.974852538 0.933705428 0.934861669 0.87271807 0.967594693 0.882329312 0.932393007 0.945378966 0.954673334 0.936764034 0.924409229 0.970423209 0.979314191 0.908807632 0.94989134 0.974755278 0.97265348 330959154 nitro Pseudomonas syringae pv. maculicola str. ES4326 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 1.08747046 1.112481071 1.142626404 1.134021628 1.118016024 1.081798315 1.087533334 1.118612095 1.095561918 1.108845567 1.085061829 1.079568822 1.078360506 1.046219814 1.045555523 1.041244078 1.098949456 1.108807144 157406625 chnb Methylobacterium populi BJ001 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium populi; 1.383463938 1.337628801 1.337322286 1.384487815 1.341757983 1.368467047 1.348124403 1.368596772 1.344132298 1.284143882 1.320621308 1.356982997 1.289107783 1.289161774 1.26416758 1.327135727 1.366851185 1.291011022 126235478 amyA Mycobacterium sp. JLS Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 0.981601876 0.956576082 0.921748477 0.988440219 0.933926305 0.943274305 0.910856238 0.945060331 0.980249265 0.951084214 0.871665446 0.951310766 0.927162354 0.909854785 0.908624124 0.924711467 1.01113991 0.97527882 90104599 cmci Rhodopseudomonas palustris BisB18 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 1.058992669 1.086586281 0.97628689 1.030728985 1.021017437 1.052776427 1.028623368 1.001007464 1.027036474 1.022887054 1.019219227 1.064658246 1.031428223 1.002322708 1.027110942 1.048062329 1.042672158 1.017340983 373851875 cellobiase Opitutaceae bacterium TAV5 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 0.94657332 0.926666158 0.874556095 0.942219289 0.886254904 0.867800576 0.861923153 0.886380519 0.925560694 0.886954798 0.892253671 0.91302413 0.825972509 0.871670077 0.848258358 0.877572074 0.982011006 0.883278162 332078270 ben_bcla Stigmatella aurantiaca Sg a15 virulence NA NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 0.939001744 0.873619537 0.877642692 0.936226544 0.892010052 0.880605143 0.927157585 0.943153098 0.890884245 0.874449548 0.858591232 0.919195741 0.819183776 0.838372302 0.82506963 0.834321454 0.94181417 0.943358475 157406148 arsc Methylobacterium populi BJ001 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium populi; 1.151845597 1.151332226 1.146356691 1.119253778 1.115869413 1.148761977 1.102929949 1.140524083 1.101852225 1.11681506 1.117777931 1.099037671 1.100980905 1.106852472 1.04251917 1.075284643 1.104357524 1.125198152 108766362 nhh Rubrobacter xylanophilus DSM 9941 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Rubrobacterales;family:Rubrobacteraceae;genus:Rubrobacter;species:Rubrobacter xylanophilus; 1.177875044 1.182374291 1.162928304 1.162968241 1.191021271 1.208423103 1.176944615 1.158991841 1.143240771 1.208305313 1.196573362 1.165033585 1.187135329 1.156765331 1.138791531 1.154006863 1.174436456 1.175742087 257458839 napa Campylobacter gracilis RM3268 Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter gracilis; 0.924321009 0.963844071 0.940479674 0.914010308 0.913602361 0.913441479 0.922551002 0.930209536 0.86720723 0.835133524 0.895747798 0.879355682 0.825344928 0.803102362 0.883000612 0.932943061 42522755 amyA Bdellovibrio bacteriovorus HD100 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Bdellovibrionales;family:Bdellovibrionaceae;genus:Bdellovibrio;species:Bdellovibrio bacteriovorus; 0.842802686 0.852411218 0.858327869 0.814800123 0.869658839 0.870416807 0.866268559 0.869077603 0.854368832 0.883982343 0.859924409 0.855059416 0.824529773 0.856333192 84778345 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.872858082 0.873011264 0.839097325 0.928637961 0.850048433 0.877974605 0.860760173 0.863203436 0.912800339 0.882061116 0.820383342 0.862012536 0.824527712 0.821006262 0.877439459 0.903383669 0.850591882 219965925 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.960445679 0.975895288 0.93482746 0.965991237 0.978303586 0.974379766 0.922122447 0.955558313 0.945200019 0.94932699 0.992342116 0.98058291 0.958347953 0.932587127 1.016864541 0.952449878 0.946213526 0.982252292 41326580 pcag Corynebacterium glutamicum ATCC 13032 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium glutamicum; 0.984764545 1.025378406 1.051982727 1.020561195 1.021169283 1.023627544 1.031420861 1.051386505 1.032374005 1.033695147 1.043946977 1.022483318 0.948775333 0.935373603 0.948273628 0.960490162 1.011341055 1.019914004 284448020 nitrate_reductase uncultured eukaryote Nitrogen N Assimilation NA superkingdom:Eukaryota; 0.767024786 0.791048981 0.843861537 0.803821374 0.868462801 0.765263429 0.803425488 0.831611498 114327315 exaa(moxf) Granulibacter bethesdensis CGDNIH1 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Granulibacter;species:Granulibacter bethesdensis; 0.855379461 0.849296064 0.806663124 0.921961575 0.847056387 0.811043565 0.871519679 0.813121877 0.841084448 0.842726474 0.900764395 0.848322465 167594305 pmoa uncultured bacterium Carbon Cycling Methane Methane oxidation superkingdom:Bacteria; 0.800537885 0.821603105 0.786767244 0.843133659 0.816362158 0.821191102 0.809111845 0.829267605 0.807644337 0.899048989 0.80691378 0.783504847 0.834637922 359767363 amie Gordonia polyisoprenivorans NBRC 16320 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia polyisoprenivorans; 0.857344492 0.831577797 0.844300139 0.787435179 0.782499227 0.812186467 0.810183815 254466287 cmci Rhodobacterales bacterium Y4I Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 1.442128974 1.433323487 1.432510317 1.419795988 1.425902124 1.449125036 1.426768615 1.406663314 1.407257784 1.423999751 1.435606928 1.427533998 1.405070219 1.406678487 1.39984261 1.421855305 1.420836534 1.4045444 157917860 endochitinase Salinispora arenicola CNS-205 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora arenicola; 0.926907334 1.001959695 0.934125969 0.986866866 0.971320087 1.00797826 0.973878589 0.943718815 0.898557318 0.998511097 0.984800842 0.984926824 0.958125256 0.946837088 0.922624598 0.916240554 0.984944346 0.979388974 383328921 chitinase Enterococcus faecium Aus0004 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Enterococcaceae;genus:Enterococcus;species:Enterococcus faecium; 0.859119171 0.855674847 0.902935655 0.815810001 0.850360581 0.867488714 0.857111679 0.845511618 0.889897687 0.80501439 0.844673439 0.828082967 0.897031329 358636502 terc Azoarcus sp. KH32C Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 0.875113749 0.827666892 0.814766058 0.845135227 0.882014688 0.885450059 0.832455848 0.82157951 0.859062119 0.853763312 0.83748671 0.830424875 0.874068957 0.834535893 0.867375348 0.869949715 110592191 nirs uncultured organism Nitrogen Denitrification NA 1.069190878 1.128090737 1.145848048 1.099788356 1.087099204 1.140708663 1.073146896 1.048693015 1.122445036 1.135964639 1.076103339 1.078525992 1.10007673 1.135183888 1.096629474 1.078450434 1.122010706 1.093088787 292655130 rubisco Haloferax volcanii DS2 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloferax;species:Haloferax volcanii; 1.270371892 1.249990239 1.2207217 1.235936977 1.185883857 1.246670235 1.180481666 1.206997268 1.20884348 1.222530372 1.189967422 1.229455711 1.171614606 1.201548196 1.167626532 1.182310731 1.260342696 1.232350357 147831549 ara Clavibacter michiganensis subsp. michiganensis NCPPB 382 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Clavibacter;species:Clavibacter michiganensis; 0.957539762 0.9659515 0.936161605 0.907027792 0.818808014 0.873888617 0.861320161 0.937650605 0.924812816 0.904761839 0.877850653 0.928051606 0.877454262 0.948222914 0.86904254 0.931520321 0.894921656 29608371 ppx Streptomyces avermitilis MA-4680 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 0.903483833 0.852457541 0.892788846 0.939315867 0.889253317 0.929151175 0.818640813 0.88423917 0.885691804 0.840659059 0.817158793 0.882522552 0.89461159 0.854103256 0.943539049 0.857710481 0.988560223 0.955111019 407235836 pcpe Burkholderia phenoliruptrix BR3459a Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phenoliruptrix; 0.796105937 0.816153177 0.850583047 0.80979458 0.797261912 0.804146831 0.814685121 0.83253312 0.812256227 347540297 terc Pseudogulbenkiania sp. NH8B Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Pseudogulbenkiania; 0.939057502 0.956903968 0.907026421 0.929865984 0.894658015 0.931446641 0.893916163 0.908067019 0.926329144 0.933947932 0.884414135 0.911042161 0.876094525 0.901268489 0.868149857 0.916103216 0.951203794 0.964795337 330839043 nifh Selenomonas sputigena ATCC 35185 Nitrogen Nitrogen fixation NA superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas sputigena; 1.31150696 1.272205518 1.269193409 1.301718752 1.252403917 1.273263364 1.246267443 1.267291459 1.288228975 1.268840727 1.272485256 1.286612069 1.237899073 1.220421163 1.198097455 1.246825839 1.281835516 1.268742832 110598476 amyA Chlorobium ferrooxidans DSM 13031 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium ferrooxidans; 0.813139274 0.820969486 0.832365865 0.825213412 0.857164637 0.802136176 0.81033959 0.790899939 0.862726385 0.818779891 0.844876203 0.833638447 0.772698773 0.797585945 0.859465529 0.877540701 355392428 fthfs Corynebacterium pseudotuberculosis 1/06-A Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium pseudotuberculosis; 1.04200638 1.046269985 1.044998247 1.093797416 1.030037266 0.979836669 1.02807833 1.040596201 1.098902476 1.04784458 1.010773613 1.081480923 1.056646609 0.984722317 0.976956852 1.018614036 1.023621529 1.030397498 319413982 phenol_oxidase uncultured bacterium Carbon Cycling Carbon degradation Lignin superkingdom:Bacteria; 1.027136274 1.052894889 1.027092398 1.083649443 1.130328585 1.114094124 1.135587532 1.07972316 1.085488607 1.118625532 1.07542277 1.054013508 1.118211425 1.104926725 1.125832085 1.07237089 1.08222643 1.039694845 332173769 amyA Glaciecola sp. 4H-3-7+YE-5 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Glaciecola; 0.941630605 0.948115964 0.95117408 0.972462622 0.965321292 0.934071127 0.981505703 0.982404968 0.953729522 0.958908118 0.948794544 0.957537897 0.901758496 0.919380648 0.955167132 0.94963888 0.882177498 0.97693322 145351467 nitrate_reductase Ostreococcus lucimarinus CCE9901 Nitrogen N Assimilation NA NA 0.959753966 0.945971913 0.946857306 0.950927807 0.947712576 0.934730039 0.913641065 0.934252729 0.944679803 0.891246439 0.958179222 0.912343748 0.882109208 0.863786585 0.843528181 0.847089028 0.945890592 0.984173559 2576394 dsrB Allochromatium vinosum Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Allochromatium; 0.90027475 0.831647415 0.825817587 0.822901277 0.864129887 0.838960823 0.819260618 0.853915021 0.880756895 0.860079695 255936697 endochitinase Penicillium chrysogenum Wisconsin 54-1255 Carbon Cycling Carbon degradation Chitin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 0.859928551 0.798151122 0.822748303 0.817345411 0.80189236 0.824909496 0.815555469 0.841872163 0.841566837 0.850409198 0.80184083 0.853761799 0.845419801 78183752 tktA Synechococcus sp. CC9902 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 0.885719815 0.825778036 0.904236169 0.81593633 0.802830375 0.829781217 0.796110273 88185704 endochitinase Chaetomium globosum CBS 148.51 Carbon Cycling Carbon degradation Chitin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 0.843986863 0.852630906 0.857656292 0.870554431 0.856011067 0.837142243 0.8491334 0.877439856 0.840554792 0.864930251 0.822160481 0.867608323 0.823330582 0.863481928 0.815009818 0.827519715 0.826407284 0.839118518 294815120 chitinase Streptomyces clavuligerus ATCC 27064 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces clavuligerus; 0.891739701 0.861537367 0.880183991 0.885174463 0.838127032 0.833496326 0.841513368 0.845344735 0.904145196 0.847574074 0.805173702 0.873967683 0.841349331 0.829896389 0.830603247 0.883751982 0.866959804 145220136 mdh Chlorobium phaeovibrioides DSM 265 Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeovibrioides; 0.999234047 1.015879271 0.949160211 0.985437489 0.9832395 1.005616516 0.98416786 1.076284744 0.968642319 0.978880006 0.990381201 0.979210874 0.961653041 0.977149521 1.128354957 1.017225296 1.018516126 1.020154916 357225632 alkb Marinobacter manganoxydans MnI7-9 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter manganoxydans; 0.888320401 0.808354643 0.850354075 0.894341547 0.840763297 0.8459297 0.855049862 0.80318715 0.839556613 0.814429755 0.881190397 0.820342205 373856467 bphd Bacillus sp. 1NLA3E Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 1.055845403 1.103330207 1.073366353 1.14767337 1.088297207 1.011722265 1.072134519 1.038955099 1.07269228 0.988500083 0.997054256 1.103826903 1.033084465 0.982099288 0.994202498 1.035069842 1.061260929 1.000145272 220721651 mer Variovorax paradoxus S110 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 0.806163833 0.832452761 0.813884981 0.850194808 0.831185214 0.846767448 0.818539013 0.829003591 0.874349014 7248705 endochitinase Streptomyces peucetius Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 1.070936372 1.063219697 1.024475825 1.056889972 1.036849476 1.043117193 1.012934055 1.0426559 1.031478605 1.024721211 0.978984077 1.016656483 1.021418931 1.003700939 0.993338231 1.008297942 1.064715368 1.049552232 296140891 limeh Tsukamurella paurometabola DSM 20162 Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Tsukamurellaceae;genus:Tsukamurella;species:Tsukamurella paurometabola; 1.329361527 1.327277554 1.301765719 1.325165344 1.289634743 1.354843524 1.261219443 1.275820976 1.260789354 1.30334873 1.288424313 1.286376077 1.264532959 1.270496951 1.260752626 1.274665044 1.342978588 1.301065003 153963000 sqr uncultured bacterium Sulfur Sulfide Oxidation NA superkingdom:Bacteria; 0.882745866 0.880231674 0.903595264 0.845303799 0.872110338 0.894090691 0.827039231 0.849363364 0.873118167 0.823786323 0.854487831 0.914886224 0.920770791 387860836 nagg Pseudomonas sp. C6 (2012) Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.903390419 0.897859163 0.921774811 0.916440901 0.962617405 0.919882456 0.895153608 0.925272435 0.920293434 0.942778065 0.901574028 0.867868402 0.846011611 0.989301388 0.828783587 0.889088581 0.909767178 0.912847788 24982949 nitro Pseudomonas putida KT2440 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 1.036983441 0.992905022 1.011894364 1.041834903 1.019423176 1.019688438 1.026439485 1.041233713 1.035294379 0.972181974 1.006774528 1.050281908 1.029484774 0.958724767 1.009223628 0.98836158 1.036860967 1.001884155 148756010 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 1.028937637 1.073863373 1.102318317 1.117928472 1.074253367 1.095733006 1.08522845 1.097352688 1.089258004 1.097603701 1.08304529 1.132705924 1.03705383 1.077388123 1.035195938 1.078775282 1.06439524 1.053956559 357423727 terc Azospirillum lipoferum 4B Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum lipoferum; 1.232223607 1.224539955 1.216351726 1.231540312 1.238428219 1.252279487 1.222974181 1.23463211 1.239676921 1.223720751 1.211425879 1.214733711 1.213497471 1.174015803 1.15542607 1.20175614 1.245746426 1.208046225 257388961 endochitinase Halomicrobium mukohataei DSM 12286 Carbon Cycling Carbon degradation Chitin superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halomicrobium;species:Halomicrobium mukohataei; 1.127440088 1.068833464 1.052126405 1.047887876 1.122576423 1.061123363 1.093078623 1.035752442 1.069478869 1.087183448 1.129766431 1.087856845 1.075596133 1.067626654 0.99790929 1.03540288 1.04670939 1.067693235 22294666 ccmN Thermosynechococcus elongatus BP-1 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Thermosynechococcus;species:Thermosynechococcus elongatus; 1.103480354 1.061492026 1.021230291 1.12744578 1.02651721 1.073866022 1.045425261 1.018742572 1.07421219 1.028312935 1.039955039 1.056654533 1.025472919 1.035506047 1.019406131 1.047635286 1.101157513 1.026442966 183982433 cutinase Mycobacterium marinum M Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium marinum; 0.818468164 0.818312269 0.83692234 0.873897562 0.831798133 0.837014194 0.882291706 0.882447415 0.875962054 0.840949212 0.821814939 0.848311808 0.819720047 0.867711269 8118249 sqr Oscillatoria limnetica str. 'Solar Lake' Sulfur Sulfide Oxidation NA superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Oscillatoria;species:Oscillatoria limnetica; 0.892009084 0.938557424 0.869838932 0.890895359 0.93160532 0.874390296 0.949209175 0.85192894 0.905603824 0.914992275 0.94113883 0.798096216 0.893916177 0.833655734 0.820643816 0.874452086 0.930323351 392084485 chnb Mycobacterium abscessus 5S-0304 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium abscessus; 0.913081646 0.833645363 1.001743825 0.888086069 0.960703734 1.119176801 0.936991073 0.880877512 0.836939095 1.057734799 0.991207954 0.932556677 0.882469494 1.114618098 1.184196023 0.895665027 0.999291464 0.958094406 119497641 oxdb Neosartorya fischeri NRRL 181 Organic Remediation Aromatics Nitoaromatics superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 1.166402693 1.16064592 1.162557167 1.155495037 1.141620908 1.157856218 1.135580979 1.119516879 1.157004833 1.165742493 1.126281198 1.153562072 1.124861997 1.108940842 1.100258649 1.120107866 1.168387625 1.178067869 354585207 heparinase Paenibacillus lactis 154 Carbon Cycling Carbon degradation Heparin superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus lactis; 0.946929596 0.976201512 0.955981297 0.9593609 0.950728203 0.954912504 0.941701734 0.968217101 0.956405311 0.990266299 0.960733247 0.974160848 0.912085861 0.929766295 0.876496621 0.888006993 0.966748533 0.970626 161366395 ppx Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 1.19314206 1.135788458 1.146394877 1.164009125 1.114511183 1.151096112 1.125928864 1.14169029 1.153732508 1.122332467 1.120818672 1.133215507 1.095774445 1.070675922 1.113600756 1.125509429 1.182945503 1.146679279 393759651 mhpb Alcaligenes faecalis subsp. faecalis NCIB 8687 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Alcaligenes;species:Alcaligenes faecalis; 1.005265196 1.008369839 0.88516514 0.986413817 0.96373219 1.0552986 0.991361208 1.002875936 0.985333717 0.984124085 0.984767554 1.014323823 0.983108216 0.973785996 0.971031559 0.978759299 0.976254841 0.991617849 376007670 gdh Arthrospira sp. PCC 8005 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Arthrospira; 1.032066609 1.046324561 1.032985054 1.048805898 1.064738079 1.026854776 1.046900637 1.041056705 1.037263546 1.061301094 0.978071097 0.974109191 0.975050085 1.020959483 1.011020683 0.991126336 339279409 one_ring_23diox uncultured bacterium Organic Remediation Aromatics Other aromatics superkingdom:Bacteria; 0.884975296 0.898932873 0.863300227 0.854459554 0.873103317 0.846168413 0.864995695 0.871020271 0.881954914 0.873243118 0.870234478 0.841842126 0.888768908 0.896331004 33574007 arylest Bordetella parapertussis Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella; 0.799104751 0.855879338 0.855307049 0.805624304 0.811092345 0.801459578 0.826043245 0.826396558 13423797 glucoamylase Caulobacter crescentus CB15 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter vibrioides; 0.945332141 0.85049173 0.816787889 0.833630649 0.851436172 0.822506272 0.868828787 0.803291439 0.873796233 0.851108869 0.889487245 0.887223084 0.878821106 0.865458184 295413048 one_ring_23diox Kyrpidia tusciae DSM 2912 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Kyrpidia;species:Kyrpidia tusciae; 1.032290722 1.046819088 1.018985012 1.060133801 1.010005243 1.016617136 1.033618377 1.025799227 1.014807207 1.020185266 1.020473785 1.009514442 1.012602482 0.99934546 1.001120013 0.985730345 1.024449273 1.01200892 337279007 fccab Ramlibacter tataouinensis TTB310 Sulfur Sulfide Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Ramlibacter;species:Ramlibacter tataouinensis; 1.078433508 1.071305584 1.084302548 1.065808862 1.088714696 1.082911979 1.071124484 1.096130914 1.06381467 1.088743618 1.067436489 1.096637349 1.035798636 1.05320352 1.008671701 1.048704341 1.065124642 1.061935381 160896886 cmci Delftia acidovorans SPH-1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 1.072539048 1.013409465 1.031483193 1.015569224 1.005960358 1.065902121 1.043982565 1.030277137 1.047374566 1.056342377 1.05143593 1.037299496 0.992185809 1.00239616 0.99423148 1.01286289 1.08978773 1.02757343 330985944 cmci Pseudomonas syringae pv. lachrymans str. M301315 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas amygdali; 0.872854824 0.828789681 0.851044932 0.921875722 0.802444783 0.889022669 0.851486174 0.872950219 0.913748024 0.850415197 0.839132381 0.868354495 0.816407843 0.883126285 0.847327253 0.891947363 0.886002251 73762870 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.977522797 0.979999265 0.971689022 1.043079209 0.979349309 0.953772702 0.947850059 0.974815776 0.998445788 0.94151139 1.025905949 1.012862505 0.947507953 0.949396066 0.93897233 0.958070968 0.940144072 0.957221225 340531624 endoglucanase Amycolatopsis mediterranei S699 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 1.048828871 1.008609657 1.000934412 1.073324473 0.994450068 1.014276717 0.97520924 1.013595364 1.064674853 1.007227927 0.984907794 1.030225933 0.961675444 0.950035619 0.926497943 0.962608388 1.049113514 1.025486299 291420600 amyA Serratia odorifera DSM 4582 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia odorifera; 0.811127686 0.807440414 0.856732821 0.831613228 0.822251669 0.900405617 0.817333288 0.838853765 0.872112836 284016799 rgl Haloterrigena turkmenica DSM 5511 Carbon Cycling Carbon degradation Pectin superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloterrigena;species:Haloterrigena turkmenica; 0.881281739 0.930869347 0.924618824 0.939579429 0.920751721 0.898045339 0.867386682 0.907377014 0.900065702 0.917436274 0.972386152 0.949181944 0.925312934 0.878286305 0.919898185 0.914475997 0.914305263 345636031 pectinase (pectate_lyase) Streptomyces zinciresistens K42 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces zinciresistens; 1.214900028 1.198665917 1.165048059 1.211346116 1.151429315 1.215148078 1.161135634 1.171139006 1.161223382 1.153749631 1.157222626 1.179793879 1.154294942 1.122343954 1.148489116 1.160082539 1.203457199 1.155562053 46318035 pcpe Ralstonia sp. SJ98 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 1.29298972 1.317224088 1.278668317 1.267336101 1.272487221 1.308576052 1.241002587 1.269812243 1.237626487 1.264046438 1.282432382 1.262763545 1.263626074 1.250372026 1.259280176 1.261216155 1.274038797 1.268113528 329934359 chitinase Streptomyces griseoaurantiacus M045 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseoaurantiacus; 1.070724406 1.026099356 0.928462953 1.062639395 1.003988158 1.060989025 0.980878238 0.994420139 1.057988015 1.02322255 1.035446493 1.025536746 1.0028054 0.984185393 0.996674055 1.006980274 1.035555856 1.038994876 12721990 napa Pasteurella multocida subsp. multocida str. Pm70 Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Pasteurella;species:Pasteurella multocida; 0.875160189 0.849428848 0.914316248 0.932741948 0.885019315 0.867725438 0.869813561 0.885506265 0.904454961 0.855961007 0.842146681 0.891580855 0.813115741 0.831028989 0.908895581 0.848661432 338232373 amyA Bradyrhizobiaceae bacterium SG-6C Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae; 0.963249892 0.948643033 0.957735637 0.942619856 0.91534656 0.914347174 0.865337081 0.922005262 0.958742307 0.917735951 0.873643662 0.897585624 0.85578215 0.873689778 0.862113063 0.866381528 0.932009333 0.927937869 209500750 nitrilase Burkholderia sp. H160 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 0.904710044 0.858685797 0.836920972 0.87453051 0.843721641 0.864855971 0.841252911 0.85905227 0.844141303 0.814951991 0.828579508 0.830482911 0.793351503 0.825409514 0.877296239 0.896739674 365418366 FBPase Bradyrhizobium sp. STM 3843 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.802394242 0.883458687 0.846926537 0.817537767 0.878283501 0.820079671 0.816175423 0.81617239 0.810693521 0.807582525 154507717 ppx Actinomyces odontolyticus ATCC 17982 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces odontolyticus; 1.175187289 1.180073422 1.137043795 1.15490949 1.147427846 1.189848163 1.144053934 1.164807692 1.161108814 1.156362078 1.132873223 1.145012147 1.116332144 1.128390931 1.067093176 1.108965998 1.13179863 1.145842777 19552382 mhpa Corynebacterium glutamicum ATCC 13032 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium glutamicum; 0.985683618 0.890250747 0.875735596 0.885734147 0.863817736 0.862573781 0.83858379 0.859072962 0.906853446 0.894493215 0.887434105 0.912333724 0.869056534 0.853429145 0.875051254 0.917083364 0.879466918 73763104 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.882333945 0.913585165 0.890985065 0.877802417 0.803569057 0.855263425 0.822714067 0.867312275 0.854046947 0.905631765 0.801482529 0.885759152 0.851218681 0.87266125 14715450 xylg Pseudomonas putida Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 1.505711505 1.466097657 1.486938886 1.447554464 1.44056969 1.494624172 1.42725163 1.436423779 1.470698213 1.475376311 1.452200352 1.455415833 1.426113272 1.423398994 1.405498277 1.428653093 1.478456415 1.470672436 18860818 alkb Pseudomonas fluorescens Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.918959351 0.866823641 0.873166779 0.935627106 0.923534483 0.903459831 0.878795782 0.869304305 0.918093268 0.880985523 0.85289436 0.857384864 0.803636639 0.841931683 0.856987997 0.824063153 0.980628066 0.934422543 119957016 arsc Mycobacterium vanbaalenii PYR-1 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 0.804314352 0.839902029 0.85062426 0.813783893 0.828421021 0.809967347 0.810408331 0.804997536 0.845052512 0.859963223 319413957 phenol_oxidase uncultured bacterium Carbon Cycling Carbon degradation Lignin superkingdom:Bacteria; 1.139467739 1.112913542 1.106711227 1.122092479 1.096424104 1.102109925 1.08714631 1.122112901 1.085948253 1.078312012 1.132736723 1.112574112 1.073848118 1.088819671 1.040971398 1.073589585 1.081691517 1.062031535 292606269 linc Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas fuscans; 1.24890224 1.226453982 1.233336441 1.260503717 1.247281553 1.246119936 1.266688583 1.235611788 1.240764103 1.240615254 1.231442703 1.238253182 1.243450878 1.188620652 1.178103897 1.196415001 1.245412073 1.187465461 359836554 endoglucanase Actinoplanes sp. SE50/110 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes; 1.092173043 1.101506214 1.077919894 1.142214562 1.125790576 1.105087668 1.076766009 1.113791512 1.119257895 1.079117893 1.052765066 1.124419548 1.070786204 1.075455331 1.056367963 1.113212718 1.099688349 1.085235889 306517686 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.931017114 0.964868137 0.980077282 0.97530672 0.946869967 0.973221123 0.895233135 0.877528663 0.962001188 0.904454264 0.863688847 0.943727952 0.871411514 0.89483855 0.881271986 0.886741233 0.961236499 0.986394236 380733628 amyA Corallococcus coralloides DSM 2259 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Corallococcus;species:Corallococcus coralloides; 0.884059018 0.887253832 0.873210556 0.849755428 0.864774014 0.887078754 0.858787675 0.905572798 0.904083779 0.876183611 0.868655566 0.9210873 0.863296254 0.906382308 0.89076459 0.940761108 99030581 ppk uncultured bacterium Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria; 1.04012495 1.071420095 1.027409662 1.04616772 1.033234322 1.038506225 1.017645785 1.033745753 1.059237499 1.052723177 1.031636767 1.029215796 0.994767652 1.004155674 0.930948111 1.008867213 1.040525531 1.067050277 118592917 cmci Stappia aggregata IAM 12614 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 0.807430097 0.792431926 13898429 dsra uncultured phenanthrene mineralizing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 0.854206915 0.871796634 0.890805683 0.952685435 0.882475029 0.833490734 0.876317878 0.893523893 0.902283956 0.908612364 0.906198035 0.938098657 0.806516388 0.837517418 0.809445206 0.846097877 282951781 terc Citrobacter rodentium ICC168 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter rodentium; 0.952425481 0.933237967 0.889659979 0.935052014 0.868211428 0.898094096 0.859629088 0.87362672 0.911198781 0.887114489 0.89344202 0.906001957 0.904496208 0.864441039 0.873870715 0.922282672 0.941833574 115375769 cellobiase Stigmatella aurantiaca DW4/3-1 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 0.903360684 0.829546682 0.90653335 0.904005883 0.89741378 0.866861619 0.899095962 0.93595115 0.85015686 0.885681153 0.880722928 0.914053763 0.854636633 0.823756932 0.871939331 0.830734506 119473354 cellobiase Neosartorya fischeri NRRL 181 Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 0.796566538 0.886680395 0.810304475 0.779101507 0.86187727 0.875662701 0.788987532 0.81155383 338708067 cysI Zymomonas mobilis subsp. pomaceae ATCC 29192 Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Zymomonas;species:Zymomonas mobilis; 0.819108268 0.825255106 255342524 amyA Flavobacteriaceae bacterium 3519-10 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae; 1.051104759 1.015607355 1.007214174 1.023237552 0.996670289 0.961786153 0.99792363 1.012342043 1.027108657 1.000370134 0.987073168 1.056216101 0.94194266 0.93584205 0.985032426 0.950814962 1.010443689 0.984452079 377533715 mdlb Gordonia terrae NBRC 100016 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia terrae; 0.907061207 0.891598799 0.93831017 0.926688589 0.906219879 0.877045212 0.889921702 0.898796474 0.922722876 0.917401112 0.905151786 0.953361151 0.824247513 0.799341555 0.792369459 0.962891778 0.896071658 0.908339256 323095080 amyA Prevotella oralis ATCC 33269 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella oralis; 1.381327406 1.40309914 1.355236791 1.363430679 1.341164691 1.347735804 1.327547933 1.35167792 1.355499875 1.347803504 1.329147934 1.378907923 1.311452058 1.305975379 1.298874117 1.315628047 1.34649957 1.360237936 32261764 nrfa Helicobacter hepaticus ATCC 51449 Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Helicobacter;species:Helicobacter hepaticus; 0.951562269 0.908772455 0.915217876 0.907358251 0.915847524 0.913338875 0.877494032 0.853452288 0.890789225 0.904066363 0.882639067 0.849409271 0.851297698 0.819449365 0.864566185 0.85719839 0.927978105 0.938717522 170691803 exaa(moxf) Burkholderia graminis C4D1M Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia graminis; 1.080257534 1.08216426 1.01029462 1.086985688 1.030494396 1.026945359 1.029975038 1.072185105 1.076737118 1.059336804 1.01307473 1.077498485 0.957683457 1.002420626 0.970282553 0.999770599 1.068140585 1.093413004 54015281 amyA Nocardia farcinica IFM 10152 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 1.163770421 1.183767217 1.12768847 1.163211448 1.114502501 1.18989725 1.101250823 1.115305913 1.127131152 1.125969807 1.128845133 1.12923054 1.11210004 1.136121576 1.113301743 1.091256318 1.180785174 1.188720046 332826442 xylanase Dysgonomonas gadei ATCC BAA-286 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Dysgonomonas;species:Dysgonomonas gadei; 0.980117388 0.976887955 1.028017127 1.024023302 1.016853078 1.021159544 0.99938593 1.04534615 1.016395119 1.007062578 1.081032824 1.008463135 0.972683725 0.953923938 1.005054746 1.02563605 0.994039415 1.014705681 160917831 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.790563317 0.775840847 0.794523678 0.814125491 66801951 narg unidentified bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.825731988 0.819368793 0.885963097 0.886687007 0.86580153 0.846410547 0.901009763 0.886402149 0.895464032 0.852403475 0.904539256 0.870267363 0.88062287 0.846785995 0.83275121 0.87524935 0.849034397 0.85120354 409404658 oxdb Herbaspirillum sp. GW103 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herbaspirillum; 0.948179124 0.867295199 0.871481156 0.957396853 0.850075846 0.905199464 0.881408138 0.889969489 0.913391509 0.879495279 0.88969151 0.911477748 0.863415538 0.848924333 0.882638603 0.897943248 0.942260227 0.887855044 338760139 FBPase Sinorhizobium fredii GR64 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium fredii; 1.013928205 0.987350779 0.978262095 1.058408438 0.967651817 0.992289122 0.97325869 1.024832358 1.02006312 0.999256536 0.950481556 1.018100849 0.935886515 0.938489553 0.973987039 0.956506687 1.010011658 1.004002979 373956837 acetylglucosaminidase Mucilaginibacter paludis DSM 18603 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Mucilaginibacter;species:Mucilaginibacter paludis; 0.922752731 0.931914295 0.91742552 0.91495197 0.962350209 0.959328566 0.935075169 0.90387338 0.959512645 0.978118267 0.860405767 0.90766547 0.925394181 0.889283058 0.814740768 0.858793914 0.856042999 0.89941582 372281194 pme Oceanicola sp. S124 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola; 1.060980267 1.031418241 1.018221094 1.057991337 0.985567731 1.084987772 0.999460974 1.029625857 1.064161925 1.037906985 1.02747492 1.011740191 0.986713037 1.024213493 1.005370263 1.009719417 1.079776355 1.032832838 346644335 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.972058042 0.901027642 0.927190308 0.96878556 0.940224943 0.946899646 0.944142008 0.986305709 0.925907399 0.903588672 0.879146018 0.945788735 0.86599384 0.851243321 0.918010954 0.898724792 0.953542832 0.948021159 268312745 amyA Thermomonospora curvata DSM 43183 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Thermomonosporaceae;genus:Thermomonospora;species:Thermomonospora curvata; 0.832678398 0.805167578 0.815571661 0.847430554 0.84426899 0.807352239 0.806137029 0.814850451 0.823331309 0.806825561 0.804465888 0.854266617 0.849499802 95111342 arsc Pseudomonas entomophila L48 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas entomophila; 1.168353732 1.089684269 1.095469543 1.149843513 1.041821462 1.096823152 1.062412165 1.103833328 1.126834832 1.073010256 1.06590252 1.097680687 1.040790573 1.069561657 1.045106832 1.075177996 1.125390826 1.081295559 383829058 vgb Saccharomonospora xinjiangensis XJ-54 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora xinjiangensis; 0.895963883 0.820959513 0.904659024 0.826216298 0.822297097 0.817837781 0.847589856 0.834610354 0.83379927 0.830040518 0.804289155 0.802902724 0.83529624 0.828118131 0.880723223 0.819604833 1001563 rubisco Synechocystis sp. PCC 6803 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechocystis; 0.949298786 0.941827923 0.916858708 0.991435281 0.945009372 0.91930316 0.90860914 0.960083378 0.953548848 0.90582933 0.864923088 0.959399748 0.896163844 0.867456665 0.862911885 0.874577346 0.932798607 0.901824858 119897205 terc Azoarcus sp. BH72 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 1.022491497 0.998048929 1.036763528 0.988696455 1.033595791 0.973088744 1.062410251 1.065852474 0.981992685 1.008373499 1.016901164 0.985029327 0.914124098 0.952966654 0.958632529 0.987338032 1.056624017 1.030014159 327547804 tktA Oxalobacteraceae bacterium IMCC9480 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae; 1.034387233 0.994196269 0.991188003 1.025664376 0.991771731 0.985162256 0.97412277 0.971647557 0.985270421 0.970095839 0.970662883 0.993006476 0.912691467 0.926346907 0.92510447 0.912219652 0.993370259 0.989053056 158306174 cellobiase Acaryochloris marina MBIC11017 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Acaryochloris;species:Acaryochloris marina; 0.79205814 0.808488195 0.847990455 0.78799969 0.814668412 0.811590822 0.836273991 0.864235563 0.823960243 0.826737361 0.833631412 0.82192184 377535400 gdh Gordonia terrae NBRC 100016 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia terrae; 1.489650754 1.480458967 1.442705218 1.472919482 1.435374204 1.504533623 1.411206391 1.427410067 1.418137968 1.429204883 1.425125482 1.432399038 1.410147136 1.422444466 1.402756257 1.433851409 1.479726321 1.445216668 227181920 terc Corynebacterium glucuronolyticum ATCC 51866 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium glucuronolyticum; 1.010764131 0.98944191 1.031916108 1.051865481 1.010302067 1.063488901 0.999158816 1.032499324 1.019077513 1.02646673 1.013754693 0.997810912 1.014203377 1.083980199 1.028395114 1.01282445 1.042361126 0.999141803 301087399 mnp Fomitiporia mediterranea Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Hymenochaetales;family:Hymenochaetaceae;genus:Fomitiporia; 1.201866906 1.197447645 1.168786619 1.193493838 1.130666504 1.201861672 1.149587687 1.195168428 1.179973728 1.155227345 1.162209341 1.178116536 1.129352717 1.148654091 1.157770442 1.141850062 1.184900851 1.18098109 110826490 aps_apra uncultured sulfate-reducing bacterium Sulfur adenylylsulfate reductase NA superkingdom:Bacteria; 1.144554575 1.095878421 1.081671639 1.075906969 1.085383038 1.094666797 1.045618613 1.036163162 1.075175111 1.063653025 1.04901151 1.044253763 1.070475511 1.041663424 1.034026354 1.032915386 1.114770091 1.074021617 302853493 actin_Viridiplantae Volvox carteri f. nagariensis Other Phylogenetic NA superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Chlorophyceae;order:Chlamydomonadales;family:Volvocaceae;genus:Volvox;species:Volvox carteri; 1.211099535 1.222758445 1.201931951 1.206830068 1.183584067 1.2074434 1.19224061 1.188240649 1.193005673 1.259265962 1.180832109 1.227350603 1.171274072 1.192966808 1.114903101 1.189507288 1.164787554 1.190198888 388430514 ppx Rhodanobacter fulvus Jip2 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Rhodanobacter;species:Rhodanobacter fulvus; 0.955004256 0.995615106 0.964410443 0.998776169 1.009671634 0.980690938 0.970590628 0.985767105 0.966812984 0.955364462 0.999464308 0.987795162 0.974102083 0.951435221 0.978352851 0.98137666 1.004257404 0.967018027 312196159 amyA Frankia sp. EuI1c Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 0.804259864 0.821143366 0.82951665 0.821467122 0.866848424 0.838243433 0.830248753 0.82160758 0.854702259 0.876763476 0.837447358 0.839819349 333795550 cysJ Agrobacterium sp. ATCC 31749 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium; 0.890676567 0.852289066 0.886417228 0.886938871 0.90666502 0.90376572 0.900349589 0.889740875 0.879684831 0.909504121 0.896655063 0.886030231 0.834263549 0.812738134 0.833062605 0.866102301 0.918160777 46371035 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.953836761 0.958673434 0.952576327 0.972984271 0.98073593 0.988311937 0.95236713 0.974768306 1.038874511 0.976696216 0.923313085 0.956760905 0.8985475 0.877921173 0.857070551 0.881928842 0.935439244 0.927098303 169859107 pec_Cdeg Coprinopsis cinerea okayama7#130 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 0.944618984 0.971578528 0.949933775 0.961083686 0.890330826 0.949634545 0.883134904 0.949045353 0.885685113 0.91112479 0.885242502 0.927506093 0.91885594 0.8764566 0.838777222 0.901015067 0.91518617 0.942754808 262199668 mer Haliangium ochraceum DSM 14365 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Kofleriaceae;genus:Haliangium;species:Haliangium ochraceum; 1.123695573 1.099684075 1.110172489 1.103065197 1.157384184 1.113816614 1.059320266 1.093218712 1.098291852 1.12008007 1.083942643 1.112348881 1.077558274 1.147683033 1.058767372 1.107749745 1.116480171 1.101000124 111609816 assa sulfate-reducing bacterium AK-01 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 1.013573768 1.032198306 0.969333086 1.02471554 0.980118076 0.957975423 0.954561315 1.013276825 1.034767961 0.994790878 0.996925105 1.036417489 0.953976333 0.953264895 0.94539556 0.946171981 1.024992811 0.940621834 327377999 tktA Pseudomonas brassicacearum subsp. brassicacearum NFM421 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas brassicacearum; 0.888799519 0.890103481 0.89250636 0.86094677 0.866322899 0.878994867 0.838057323 0.871783771 0.837376766 0.881358316 0.801146965 0.834945636 0.836688461 0.86281048 0.891211997 373460471 ara Prevotella maculosa OT 289 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella maculosa; 1.33069543 1.225221861 1.240530034 1.267058578 1.244466322 1.234765025 1.106961881 1.26585573 1.280984305 1.236756652 1.250161123 1.262701915 1.226842016 1.214379541 1.175099895 1.213399132 1.281518462 1.221075784 308083469 one_ring_23diox uncultured bacterium Organic Remediation Aromatics Other aromatics superkingdom:Bacteria; 1.426471282 1.407784657 1.400488501 1.367984669 1.365658145 1.409429346 1.360682449 1.377347042 1.368467152 1.38275081 1.37400803 1.373605465 1.354786325 1.36924138 1.364765915 1.357489255 1.390955376 1.384247724 386358357 amyA Streptomyces cattleya NRRL 8057 = DSM 46488 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces cattleya; 1.323194165 1.312112947 1.287360332 1.281811343 1.294289784 1.333845855 1.296101321 1.308673535 1.27288112 1.280669963 1.29220077 1.285911141 1.315905425 1.270313515 1.262037463 1.275284153 1.312516162 1.290475763 365825509 acetylglucosaminidase Actinomyces graevenitzii C83 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces graevenitzii; 0.835406499 0.804562141 0.832378341 0.822517379 0.882195665 0.85623077 298728121 CsoS1_CcmK Lysinibacillus fusiformis ZC1 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Lysinibacillus;species:Lysinibacillus fusiformis; 0.831377035 0.816708752 294338564 CsoS2 Thiomonas sp. 3As Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Thiomonas; 1.13622897 1.079948635 1.133675705 1.140560099 1.108658988 1.133735688 1.092600685 1.133337561 1.136535346 1.117658159 1.081469862 1.120009518 1.093145621 1.094891561 1.106020983 1.083473686 1.124710739 1.081899741 227549495 mer Corynebacterium lipophiloflavum DSM 44291 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium lipophiloflavum; 0.861339409 0.894383631 0.880153354 0.866800923 0.838250197 0.892389887 0.822771618 0.828951837 0.860986192 0.840405071 0.881247658 0.907225813 145240201 phospholipase_C_fungi Aspergillus niger Carbon Cycling Carbon degradation Phospholipids superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 0.815018068 0.862728445 0.863172425 0.881712063 0.814784073 0.821520235 0.838743214 0.872073542 0.815623126 226315206 ccmL Brevibacillus brevis NBRC 100599 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Brevibacillus;species:Brevibacillus brevis; 1.432410582 1.353393309 1.449056756 1.445768249 1.422638667 1.477694978 1.446960045 1.447903965 1.432079784 1.420027174 1.431616466 1.439092515 1.414738382 1.403156424 1.513736703 1.45015752 1.465934601 1.375141668 197290632 napa Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480 Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 1.088732604 1.071519554 0.986414584 1.041672766 1.058456698 1.058088257 1.052344118 0.998086888 1.02957435 1.04624078 1.079665239 1.064125724 1.054937646 1.043897024 1.045982304 1.059885972 1.064540334 1.04645472 299541221 rubisco Nitrosococcus watsonii C-113 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Nitrosococcus;species:Nitrosococcus watsonii; 0.965770072 0.938693744 0.86529733 0.992622646 0.863079908 0.952750904 0.887527799 0.943489065 0.971634634 0.941312298 0.889597179 0.932069703 0.878771917 0.911185828 0.88745914 0.880485185 1.000773789 0.931706897 373248960 pectinase (pectate_lyase) Bacillus licheniformis Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 1.045146794 1.005069718 0.986782797 1.069054979 1.025874635 1.01816776 1.004722574 0.987588961 1.027765489 0.936452684 0.970058432 0.985494871 0.969272086 0.956443731 0.9383265 0.950380593 1.031034941 1.013921277 255104740 fthfs Thalassiobium sp. R2A62 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Thalassobium; 0.872411299 0.901255454 0.817030321 0.902738783 0.821253698 0.882694414 0.817104837 0.842251278 0.884762415 0.847497689 0.827405735 0.85370429 0.828522435 0.820590339 0.88304632 0.905110718 118026212 pmoa bacteria endosymbiont of Bathymodiolus childressi Carbon Cycling Methane Methane oxidation superkingdom:Bacteria; 0.809636203 0.788456813 0.80276687 0.811607722 0.801499131 0.79321019 0.834156397 0.803488576 0.812051063 0.81651819 0.835921454 0.853134073 227819372 narb Sinorhizobium fredii NGR234 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium fredii; 0.794254012 0.797605106 0.760549246 0.832341759 373101168 poba Cupriavidus basilensis OR16 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus basilensis; 0.813470055 0.800255964 0.788163369 0.818871849 0.807034885 0.813147367 0.817492251 0.790174538 0.788298021 0.827291188 0.808733899 299132079 tktA Afipia sp. 1NLS2 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Afipia; 0.88865836 0.880348787 0.886828548 0.918845608 0.865410503 0.930762649 0.85184163 0.871968461 0.93216365 0.905520311 0.971713415 0.879782954 0.874850462 0.878499497 0.844211493 0.896351331 0.864931794 355529099 amyA Paraprevotella clara YIT 11840 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Paraprevotella;species:Paraprevotella clara; 0.831473038 0.81940511 0.843396876 0.812579555 0.904455408 0.811343545 0.837887085 0.877349778 0.810666969 0.830425482 0.824595344 0.856585122 407000183 bphb uncultured bacterium Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria; 0.924420413 0.890949763 0.93391946 0.989036052 0.953390248 0.897968773 0.934645822 0.990702617 0.957137923 0.949628323 0.919523517 0.981972359 0.899951935 0.940093571 0.924581621 0.933446367 0.919031294 0.920056321 170134506 mult_ring_12DiOx Burkholderia ambifaria IOP40-10 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ambifaria; 0.814905747 0.848133281 163733288 nhh Roseobacter litoralis Och 149 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter litoralis; 1.000162128 0.967907581 0.942988546 1.013549691 0.93854256 0.989141321 0.959278598 1.021015981 0.97151557 0.965869765 0.93878506 0.994379239 0.956109543 0.922160194 0.975235789 1.036104478 0.997128893 0.971417144 262208728 B_lactamase_A Comamonas testosteroni CNB-2 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 1.134167764 1.093221636 1.101819763 1.137937232 1.126421335 1.097762522 1.096939704 1.102599295 1.104157735 1.060302536 1.069929218 1.105927127 1.100992267 1.019962475 1.067006076 1.065292815 1.146170082 1.097101789 69298861 urec Silicibacter sp. TM1040 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 0.902988185 0.910587183 0.864837869 0.895031512 0.875945224 0.903288198 0.871877295 0.906286666 0.918754151 0.859292753 0.900215165 0.838525472 0.90254529 0.835312551 0.864257443 0.928403528 0.958228199 306984208 FBPase Cyanothece sp. PCC 7822 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 0.838056951 0.794311174 0.827612424 0.856403817 70959472 mnp Coriolopsis gallica Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Coriolopsis; 0.961777516 0.87907415 0.932351323 0.929227041 0.955566 0.926284732 0.918432232 0.908351722 0.934279989 0.881515297 0.917138033 0.948713787 0.930234775 0.890918146 0.870673805 0.889828592 0.918682456 0.915049357 386839803 amyA Streptomyces hygroscopicus subsp. jinggangensis 5008 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces hygroscopicus; 0.966605932 1.012177819 1.011731525 1.007747306 1.003252529 1.004836718 0.992651827 0.992353327 0.975959073 0.989438401 1.012636076 0.968408774 1.002207832 0.933914082 0.909064073 0.913965304 0.98557483 1.010012977 332299168 pectinase (pectate_lyase) Treponema brennaborense DSM 12168 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema brennaborense; 0.96917913 0.886977381 1.053218512 0.877141812 0.936092663 0.970370989 1.090397021 0.902920819 0.90249057 1.119028737 0.961453786 0.916751245 0.832219822 0.987053497 0.897859204 1.064897648 1.019943953 0.916765058 299134583 amyA Afipia sp. 1NLS2 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Afipia; 1.155785442 1.159482152 1.099401254 1.127735246 1.101973069 1.104244785 1.139132274 1.095834462 1.114236897 1.105055951 1.099471088 1.115412317 1.084745767 1.074916688 1.071242814 1.065939986 1.129055522 1.101411668 85090607 phenol_oxidase Neurospora crassa OR74A Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Neurospora;species:Neurospora crassa; 0.89141549 0.797342877 0.763617938 0.878143296 0.812461803 0.798881222 0.780224279 0.813829515 0.776900466 392413681 cmua Desulfomonile tiedjei DSM 6799 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophaceae;genus:Desulfomonile;species:Desulfomonile tiedjei; 0.969277232 0.952829855 0.953093061 0.931867226 0.937313172 1.000484308 0.884381601 0.947346156 0.921058882 0.938180077 0.884646644 0.925889376 0.916880714 0.982387551 0.941105321 0.914118023 1.001161353 0.983068607 62512293 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.190393596 1.19341732 1.167942505 1.200533291 1.17516422 1.191314763 1.178455189 1.191285111 1.154839267 1.162342786 1.170621114 1.186495484 1.137553998 1.138122026 1.10399086 1.145858346 1.171669932 1.19823571 365419749 cpna Bradyrhizobium sp. STM 3843 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.916290815 0.840169396 0.896485724 0.938810621 0.879094492 0.879630665 0.900268734 0.952181185 0.946601751 0.88123804 0.853677816 0.944440826 0.889247679 0.841821427 0.911803509 0.893578615 115260130 ara Rhizobium leguminosarum bv. viciae 3841 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 0.989928902 1.001504799 0.925160472 0.976464483 0.93371888 0.918231761 0.930442613 0.945792963 0.960847882 0.968556566 0.941159999 0.960244237 0.925412473 0.930255796 0.898991949 0.908963384 0.965312799 0.984564025 127512817 amyA Shewanella loihica PV-4 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella loihica; 1.01521453 1.036349053 0.990860729 1.051947338 0.972399618 1.033822809 0.943276303 0.959292561 0.984431222 1.007924634 0.939430441 0.960471854 0.964743753 0.939671807 0.911952949 0.976552838 1.001907849 1.008759917 91786039 mdld Polaromonas sp. JS666 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 1.328781496 1.29620385 1.290300955 1.329065969 1.287854465 1.296576763 1.28070372 1.288972598 1.295717851 1.285854935 1.283356108 1.298994814 1.254368571 1.242985948 1.268244926 1.261390921 1.320934566 1.267268192 403401054 nitrilase Gordonia namibiensis NBRC 108229 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia namibiensis; 1.135740802 1.026881887 1.10526763 1.090128111 1.046906067 1.040588953 0.911456324 1.048267456 1.088424782 1.033320904 1.064737802 1.05132817 1.045193369 1.033710967 0.98089032 1.033812843 1.115956423 1.053404782 334102752 tfth Sphingobium chlorophenolicum L-1 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium;species:Sphingobium chlorophenolicum; 0.773505752 0.835993317 257335312 FBPase Anabaena variabilis ATCC 29413 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Anabaena;species:Anabaena variabilis; 1.094697409 1.075689799 1.177800539 1.095375126 1.125252075 1.114389351 1.091895651 1.103896909 1.07285825 1.098021637 1.105352801 1.104240494 1.070741505 1.039207967 1.041699467 1.1275933 1.080265443 76577420 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.113475404 1.091371351 1.117983997 1.088346475 1.11377534 1.105879981 1.105227592 1.11318711 1.110302015 1.113030283 1.105158175 1.108964668 1.057833375 1.054165088 1.056163005 1.084960828 1.112715366 1.141215329 268608080 mannanase Ruminococcus flavefaciens FD-1 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus;species:Ruminococcus flavefaciens; 0.767896093 0.801453943 283472597 ppk Xanthomonas albilineans Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas; 0.890561957 0.892460131 0.8895522 0.897115735 0.88597315 0.893919313 0.875052079 0.845700661 0.861264529 0.894271599 0.809566118 0.81215454 0.876748016 0.894447744 0.933318882 254821614 cysJ Mycobacterium intracellulare ATCC 13950 Sulfur Reduction NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium intracellulare; 0.952343969 0.97241703 0.93132947 0.956249899 0.897196519 0.973594407 0.907060498 0.940996089 0.935129127 0.968453489 0.921702041 0.930277487 0.874746877 0.912945059 0.859086732 0.957371484 0.959608737 0.988932835 55377139 amyA Haloarcula marismortui ATCC 43049 Carbon Cycling Carbon degradation Starch superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloarcula;species:Haloarcula marismortui; 0.970111556 1.003394921 1.013171567 0.994264035 0.981162257 0.970758202 0.971626636 0.977194764 0.988871577 0.974993508 0.983231604 0.976134775 0.917062804 0.910833893 0.942894334 0.913306457 1.02150222 0.975641528 365266016 amyA Actinomyces sp. oral taxon 849 str. F0330 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 849; 1.057376641 1.092991206 1.07415024 1.0799346 1.097961431 1.101573372 1.097277835 1.061597403 1.081202634 1.085402295 1.088046786 1.043836835 1.062251424 1.046573481 1.007922 1.032983671 1.051144339 1.061784093 150036080 soxY Beggiatoa alba Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Thiotrichaceae;genus:Beggiatoa; 0.833142128 0.7893897 0.825358663 0.831800273 0.802159382 0.829593994 0.828400703 0.855629192 0.816378837 0.818458325 71402612 narb Lyngbya aestuarii PCC 7419 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Lyngbya;species:Lyngbya aestuarii; 1.088323798 1.074133781 1.058486686 1.10689339 1.070786474 1.074753607 1.057562004 1.102611038 1.104138502 1.045255843 1.052482274 1.08282885 1.047244049 1.064103897 1.112163901 1.047668739 1.079065903 1.053344938 162285079 tktA Hoeflea phototrophica DFL-43 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Hoeflea;species:Hoeflea phototrophica; 1.074195842 1.055998979 1.052174602 1.033111693 1.08819668 1.050681026 0.987556401 1.003715218 1.025438414 1.038659279 1.028423291 1.049236824 1.003748202 1.042605303 1.042385045 0.996040726 1.044959697 1.075930106 359736194 catechol_b Rhodococcus pyridinivorans AK37 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus pyridinivorans; 0.920728022 0.871130611 0.925641686 0.922798729 0.878342398 0.845299581 0.865890808 0.926117553 0.947042258 0.889276983 0.896460106 0.918564025 0.842495517 0.847149114 0.863150846 0.863727213 0.920289966 0.945951374 29832916 RgaE Streptomyces avermitilis MA-4680 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 1.293176015 1.252556996 1.263100137 1.286209819 1.232475968 1.287367212 1.243478301 1.253196305 1.259996018 1.248136986 1.238581752 1.26178157 1.24283778 1.228583669 1.227201051 1.239674219 1.28684295 1.254551588 226424962 phenol_oxidase Trametes sp. C30 Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Trametes; 0.87524815 0.811979529 0.885883648 0.920253498 0.906266533 0.870725178 0.865620227 0.916385671 0.905635286 0.848396275 0.838133356 0.865505297 0.840918728 0.821743207 71557669 phn Pseudomonas syringae pv. phaseolicola 1448A Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas savastanoi; 1.278090275 1.263589841 1.243028302 1.278301607 1.234325332 1.255508879 1.160708902 1.247935708 1.240792318 1.259353905 1.205200198 1.247490596 1.212263047 1.198333208 1.179023119 1.211956575 1.249918207 1.257407495 139478549 mer uncultured soil bacterium Metal Homeostasis Mercury Detoxification superkingdom:Bacteria; 0.819785607 0.851832852 0.80407831 0.782153228 0.820674997 0.839781651 0.845442925 0.81798145 0.789932464 0.810257159 315418203 xylanase Asticcacaulis excentricus CB 48 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis excentricus; 1.341738068 1.233110224 1.258145317 1.276122952 1.262527252 1.223888528 1.250324786 1.278082159 1.257565278 1.226233536 1.243198939 1.280336219 1.259534892 1.195870208 1.248438168 1.237799966 1.249304396 1.178636075 357014030 bphF1 Paenibacillus elgii B69 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus elgii; 1.078776057 1.070346163 1.060186707 1.063391141 1.043883715 1.047796394 1.006841631 1.049794679 1.061703583 1.06101156 1.048164759 1.101499436 1.041619658 1.062958559 1.040793175 1.095938402 1.051172272 1.056963651 386811827 glucoamylase planctomycete KSU-1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae; 1.090355184 1.058332115 1.056783738 1.064764043 1.03223996 1.082205178 1.054621373 1.069525198 1.056655003 1.038265856 1.042362135 1.073598528 1.026070402 1.050644376 1.012497754 1.073578545 1.060390716 1.041035186 147850231 CsoSCA Synechococcus sp. RCC307 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 0.942666877 1.036057785 0.932609816 0.959636431 0.913749909 0.938550754 0.906567577 0.893702428 0.915218889 0.930291716 0.908898973 0.938475207 0.94603704 0.908704114 0.923330216 0.903247044 0.958276756 0.952775494 324310830 amyA Odoribacter splanchnicus DSM 20712 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Odoribacter;species:Odoribacter splanchnicus; 0.773232095 0.795238079 0.859953318 0.841775957 0.819365186 0.786784026 0.826003166 0.763152153 0.839446686 346992562 tktA Ruegeria sp. TW15 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 0.808253944 0.877319654 0.782925564 0.817266164 269099338 CsoS1_CcmK Thermanaerovibrio acidaminovorans DSM 6589 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Synergistetes;class:Synergistia;order:Synergistales;family:Synergistaceae;genus:Thermanaerovibrio;species:Thermanaerovibrio acidaminovorans; 0.850292717 0.901089505 0.82344773 0.896069918 0.823203625 0.852593736 0.836378821 0.818902284 0.804301555 0.824233543 0.873836599 0.882313073 177840474 tehb Opitutus terrae PB90-1 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 0.957055133 1.002572892 0.973549095 1.00839404 1.003256289 1.004242154 0.995158171 0.991108184 1.001836094 0.983128711 0.999517305 0.969803738 0.980888876 0.967714504 0.968589342 1.01544651 1.016221879 1.024390882 226227000 gdh Gemmatimonas aurantiaca T-27 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Gemmatimonadetes;class:Gemmatimonadetes;order:Gemmatimonadales;family:Gemmatimonadaceae;genus:Gemmatimonas;species:Gemmatimonas aurantiaca; 1.153586925 1.010074383 0.94471745 0.977131155 0.926720916 0.958710202 0.948739543 0.97182603 1.023342698 0.917210326 0.949507229 0.963740634 0.899531589 0.90443499 0.906611514 0.910393638 0.97480763 0.93877773 83840222 arsc Sulfitobacter sp. NAS-14.1 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 0.898595586 0.877420997 0.939584664 0.900229769 0.927230213 0.948353305 0.918614918 0.921273702 0.896755403 0.897795805 0.925568749 0.907824522 0.888357048 0.918366977 0.863729149 0.845117968 0.917795042 0.892994274 91203550 hzo Candidatus Kuenenia stuttgartiensis Nitrogen Anammox NA superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;genus:Candidatus Kuenenia; 0.832787455 0.793940163 0.864738222 0.883269172 0.810613968 0.821690305 0.852297033 0.809475638 0.824531107 0.857748777 0.827173084 0.820040658 0.912670615 0.863761302 239905105 b_lactamase Desulfovibrio magneticus RS-1 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio magneticus; 0.822418412 0.85269425 0.873651202 0.80685836 0.813054127 0.8075368 0.87635613 0.789428689 0.803237436 0.796603627 164455536 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 1.124418883 1.140579677 1.057707508 1.112477777 1.055019166 1.130759824 1.073286901 1.094203125 1.095885823 1.093494001 1.038594062 1.092314668 1.035893563 1.067140282 1.001720243 1.044310321 1.118965176 1.122924685 29828693 amyA Streptomyces avermitilis MA-4680 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 0.992222964 0.971259679 0.950315144 0.992343236 0.89260536 0.980015949 0.914742019 0.963511918 0.983142939 0.957497506 0.910313054 0.931205451 0.920379438 0.94922327 0.864444511 0.902595587 0.998827929 0.977230937 56566214 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.908610727 0.936798671 0.815071113 0.903995422 0.966102922 0.905083551 1.073815325 0.909329451 0.954012664 0.977552543 0.97281088 0.865496975 0.946053643 0.938095132 0.870222105 0.903497827 0.938422171 385881722 amyA Micromonospora lupini str. Lupac 08 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Micromonospora;species:Micromonospora lupini; 0.939956974 0.964261948 0.944025086 0.954227273 0.958074383 0.983732902 0.918577495 0.937157909 0.898421885 0.951924462 0.914322346 0.936511996 0.91237014 1.019853207 0.936811405 0.916731008 0.909113742 0.966391691 90104717 mdlc Rhodopseudomonas palustris BisB18 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 1.151331741 1.136461462 1.160262996 1.196053858 1.080207773 1.143025463 1.119263759 1.14282714 1.133140227 1.13394096 1.109989707 1.134932073 1.085048282 1.099520921 1.090897419 1.136285552 1.144087488 1.147833311 83404766 nirs uncultured organism Nitrogen Denitrification NA 0.962118497 0.977556992 0.953396042 0.996006128 0.96043623 0.979649658 0.971625427 1.004970002 1.012021299 0.99871262 0.937860058 0.95107885 0.957190283 0.964198029 0.971424252 0.942985464 1.011604521 1.006196441 255707042 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.048010677 1.052300687 1.060388137 1.060726969 1.031112621 1.002933069 0.990134076 1.052832592 1.046634736 1.030523275 1.011290871 1.052115569 1.00100859 0.954403772 0.959580982 0.979418426 1.095481065 1.045200176 259346287 poba Silicibacter sp. TrichCH4B Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 1.118110888 1.129069187 1.080524292 1.12942129 1.103957606 1.122996679 1.113464989 1.121605192 1.087952772 1.074093576 1.094885529 1.119573553 1.097728187 1.075931126 1.076013333 1.101832727 1.107160891 1.099823543 308741610 amyA Eubacterium limosum KIST612 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Eubacteriaceae;genus:Eubacterium;species:Eubacterium limosum; 1.138005466 1.09667183 1.102252109 1.108823943 1.08872373 1.085406404 1.085542589 1.103019691 1.111510857 1.111533013 1.108763868 1.112038348 1.056333678 1.071882589 1.092581706 1.084414205 1.087556378 1.132544483 4204384 catechol_b Sphingomonas sp. A8AN3 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 1.028146848 0.989838943 1.021338102 1.022468244 1.015317253 1.035797883 0.977627434 0.952218896 0.994484054 0.982790466 0.992200219 0.99279653 0.965939094 0.962636137 0.938024406 0.967288905 1.043924746 1.024386578 197714046 xylanase Streptomyces sviceus ATCC 29083 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 1.051027172 1.070631079 1.071210872 1.072620135 1.07155609 1.057175638 1.080818576 1.089991549 1.070335377 1.071299171 1.097459784 1.079287166 1.022432167 1.011413732 1.027336361 1.107154064 1.112317183 1.089751054 83972412 nosz uncultured alpha proteobacterium Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 0.98312144 0.974473632 0.924026458 0.959527167 0.934246203 0.96317625 0.940936845 0.955238251 0.943590822 0.932690809 0.930989535 0.942415876 0.945575257 0.916061377 0.902313487 0.87600806 0.968808298 219939174 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.041607438 1.023710836 1.027179004 1.065762883 1.035736513 1.043905382 1.049743818 1.010674438 1.039596029 1.040076882 1.040430127 1.03833212 0.989604629 0.967486911 0.944407453 1.01191055 1.06086066 1.010221934 357583310 arsc Desulfovibrio sp. FW1012B Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 1.061249001 1.04416721 1.028305332 1.061460177 1.002580365 1.047374588 1.018870254 1.052518147 1.04658831 1.056063895 0.972890125 1.050849138 1.002711282 1.061224663 0.992970521 1.014630265 1.046136521 1.087596963 304553679 terc Bifidobacterium dentium ATCC 27679 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium dentium; 0.807821356 0.889404067 0.833384143 0.890901944 0.871729843 0.829008928 0.820990417 0.872043806 0.869482621 0.826886182 0.835522201 0.86242444 0.788082907 0.870493411 0.873538299 0.867345556 160917573 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.815693228 0.817709564 0.828831747 0.820323219 0.887098932 0.799192346 0.79402337 0.819782984 371445048 dsrB uncultured Desulfobulbus sp. Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobulbaceae;genus:Desulfobulbus; 0.83990562 0.824025973 0.810578707 0.818957051 0.802162729 0.817997258 157912382 TIM Dinoroseobacter shibae DFL 12 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 0.937022285 0.919381795 0.919109473 0.938209443 0.892380094 0.928797019 0.919043521 0.875169204 0.927852305 0.902925088 0.958153254 0.897683046 0.934511234 0.925044021 0.914152122 0.887307168 0.950838362 0.925356611 215459190 pec_Cdeg Moniliophthora perniciosa FA553 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Marasmiaceae;genus:Moniliophthora;species:Moniliophthora perniciosa; 0.782461825 0.813451337 146761192 fcbb Pseudomonas sp. CBS3 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Proteobacteria; 1.17681565 1.156662781 1.1166066 1.167643668 1.078054284 1.166049334 1.10791074 1.146064591 1.13804211 1.131800232 1.101667968 1.147527602 1.068739485 1.116429059 1.079086463 1.121798018 1.144906894 1.161699582 206577388 poba Klebsiella pneumoniae 342 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 0.950544468 0.935330858 0.941951512 0.906248606 0.936429343 0.914680639 0.811780875 0.856158965 1.008153035 0.927148955 0.861682978 0.909777588 0.826445022 0.827547952 0.883919311 0.931723267 1.101715947 0.925615209 169761077 nitro Pseudomonas putida W619 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 0.964893839 1.037450717 0.959030387 0.998927286 1.007735195 1.019808734 0.997111154 0.994186757 1.000968932 0.984653706 0.989518281 1.014498422 0.983315297 0.958040213 0.962335345 0.982434089 1.005819799 1.011385445 88800970 amyA Reinekea sp. MED297 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Reinekea;species:Reinekea blandensis; 1.029930524 1.035090433 1.004311666 1.032307476 1.002309754 1.04332515 1.014585295 1.029075 0.996520217 1.020202329 1.020976104 1.016459556 0.949276202 0.98995733 0.931200217 0.989996684 1.022286356 1.01071821 371588337 alginase Rahnella aquatilis CIP 78.65 = ATCC 33071 Carbon Cycling Carbon degradation Alginate superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Rahnella;species:Rahnella aquatilis; 1.068966578 1.028415935 1.082438668 1.059492056 1.019084411 1.032399039 1.000930986 1.039006367 1.048692051 1.068928123 1.064608619 1.04378673 1.028535046 1.065281011 1.015730584 1.051392521 1.066736997 1.052117033 262404791 PRI Vibrio sp. RC586 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 0.822732762 0.929153746 0.971007011 0.841996041 0.881726805 0.865477162 0.855177424 0.829772815 0.904510127 1.009245448 0.838564001 0.886064459 0.829411427 0.840357976 0.800274891 0.829152313 0.833007916 0.813736759 334880735 terc Lactobacillus pentosus MP-10 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus pentosus; 1.183968246 1.170400214 1.191443744 1.171778353 1.154877752 1.178002682 1.169265474 1.222388137 1.198339933 1.141618085 1.156793681 1.165802758 1.144287054 1.124355447 1.146591242 1.230334471 1.202077062 1.152471905 359838165 pme Actinoplanes sp. SE50/110 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes; 1.101970413 1.020387671 1.072834673 1.025833231 0.99109308 1.030122136 0.972902949 1.019482413 1.050565899 1.016211421 1.005655996 0.992384261 0.987875882 0.989385587 0.97323109 1.024951181 1.052845344 1.03339221 350554244 amyA Thiorhodospira sibirica ATCC 700588 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thiorhodospira;species:Thiorhodospira sibirica; 1.052638391 1.09412009 1.099122244 1.106072485 1.102722503 1.084205562 1.098098822 1.108374719 1.114931416 1.067057294 1.087413509 1.08245083 1.055025871 1.026975452 1.057883971 1.009236598 1.045440698 1.045405809 54025491 catb Nocardia farcinica IFM 10152 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 1.174560282 1.169715063 1.147645933 1.137357884 1.156180361 1.195824935 1.143048183 1.129684339 1.149441452 1.170065871 1.154236704 1.122034882 1.089747065 1.092359792 1.068449386 1.121253147 1.169917567 1.168437648 380774146 amyA Microbacterium laevaniformans OR221 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Microbacterium;species:Microbacterium laevaniformans; 0.89395073 0.90694872 0.88240486 0.899544813 0.888308248 0.888782167 0.869474997 0.853465143 0.865595986 0.88300952 0.89005268 0.859466822 0.846820592 0.864566336 0.843195249 0.861421524 0.910472014 0.922250899 158314713 bphd Frankia sp. EAN1pec Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 1.335790735 1.336671859 1.313866727 1.284432122 1.296822147 1.370672884 1.261101736 1.275377377 1.282052151 1.291132004 1.280943885 1.259414635 1.293733603 1.288392027 1.261657743 1.261309613 1.342934765 1.29642605 347726895 dsrB Desulfovibrio sp. DMSS-1 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 0.855181772 0.881221406 0.848931608 0.877245896 0.868747169 0.870179542 0.865306964 0.838756113 0.89658949 0.805222523 0.849890924 0.848398789 0.825441288 0.850976319 78362787 SoxC Thiomicrospira crunogena XCL-2 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Thiomicrospira;species:Thiomicrospira crunogena; 0.910470531 0.814616031 0.795410853 0.798424047 0.829884282 0.826002685 0.817089019 0.873983498 0.815927075 0.858929047 0.87984894 0.842531505 0.809902859 0.823682707 0.8338101 377573237 amyA Mobilicoccus pelagius NBRC 104925 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dermatophilaceae;genus:Mobilicoccus;species:Mobilicoccus pelagius; 0.917585632 0.915011429 0.906471248 0.920043158 0.901889383 0.902134496 0.863367371 0.868201534 0.899758851 0.86943972 0.854719464 0.878076678 0.84415835 0.881646258 0.841409386 0.866191574 0.929844554 0.901533272 371718836 amyA Caldithrix abyssi DSM 13497 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;genus:Caldithrix;species:Caldithrix abyssi; 0.904878391 0.877372514 0.856211814 0.903148566 0.880358626 0.889373631 0.805339005 0.853474936 0.876692355 0.895433988 0.866727067 0.881672915 0.858895591 0.831092774 0.882667367 0.881962286 0.904379512 0.934148376 345873284 ccmL Thiorhodococcus drewsii AZ1 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiorhodococcus;species:Thiorhodococcus drewsii; 0.876812943 0.855718134 0.882439423 0.875653949 0.821957107 0.815742865 0.812792347 0.813278673 0.823736996 0.884537056 77962972 xyla Yersinia mollaretii ATCC 43969 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia mollaretii; 0.865172273 0.882211513 0.840187533 0.871652927 0.869908972 0.898435312 0.869867211 0.887179198 0.887878014 0.847147192 0.861425981 0.866285974 0.846375546 0.833593898 0.871161356 0.929133397 0.841422442 13424711 cysJ Caulobacter crescentus CB15 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter vibrioides; 1.15102096 1.155000437 1.145085286 1.151910296 1.148087666 1.167088862 1.156841646 1.144272594 1.148402822 1.129336063 1.162395354 1.136111974 1.108501047 1.08515292 1.066195432 1.108911765 1.15794714 1.133842816 222149683 pgk Agrobacterium vitis S4 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium vitis; 0.967881069 0.936910766 0.939342668 0.987983935 0.893282076 0.964343031 0.956638924 0.984727906 0.966525861 0.944729344 0.925324137 0.944267671 0.828092849 0.943767909 0.799054906 0.899525562 0.95236297 0.952105476 29605798 amyA Streptomyces avermitilis MA-4680 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 1.302827686 1.312016181 1.227679958 1.293659071 1.236345835 1.242799753 1.166400946 1.286301721 1.27324006 1.26283772 1.197223845 1.282638742 1.239947946 1.245654988 1.260185852 1.208488074 1.334790075 1.310758972 167592096 ppx Heliobacterium modesticaldum Ice1 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Heliobacteriaceae;genus:Heliobacterium;species:Heliobacterium modesticaldum; 1.177902109 1.138799065 1.176795839 1.193143134 1.175544999 1.174440146 1.141448356 1.214430418 1.162319297 1.179115532 1.14582926 1.206481955 1.146649383 1.144681618 1.174147567 1.153415552 1.156845055 1.149406099 338737333 exaa(moxf) Hyphomicrobium sp. MC1 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium; 1.101128034 1.054550213 1.055555051 1.108341942 1.088487202 1.06832411 1.047933985 1.06114388 1.078596349 1.0591262 1.073138846 1.076075264 1.055507572 1.019647543 1.038112049 1.042680947 1.09065045 1.079520364 89113906 exopolygalacturonase_fungi Aspergillus niger Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 0.814922561 0.782338838 0.814449725 0.753404976 0.818105669 0.763562286 0.791974343 0.809287116 347736116 ara Azospirillum amazonense Y2 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum amazonense; 1.352746665 1.337155961 1.329391609 1.342552386 1.320251765 1.376544788 1.308133337 1.342543934 1.297571243 1.304805088 1.329744411 1.32180853 1.305081798 1.305153793 1.293765798 1.323916692 1.338890903 1.316243722 225044924 acetylglucosaminidase Clostridium asparagiforme DSM 15981 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium asparagiforme; 0.823513479 0.77856463 0.823845261 0.845621426 0.851594962 0.832151412 0.817090328 0.849763629 0.799657788 0.80336454 0.79909166 0.872688284 0.838279643 0.838032181 121701157 lactase_fungi Aspergillus clavatus NRRL 1 Carbon Cycling Carbon degradation Lactose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 0.857762831 0.872175063 0.847001218 0.926564708 0.827774752 0.961476362 1.052163114 0.845756988 0.812551606 0.805090313 0.80820843 0.855522133 0.856471506 0.837833418 0.913516436 0.924522645 219563148 mult_ring_12DiOx uncultured bacterium Organic Remediation Aromatics Other aromatics superkingdom:Bacteria; 0.831357066 0.773526352 0.824680901 0.801255302 0.91681144 0.852082061 0.764108681 0.863697013 0.856424908 302408903 mannanase Verticillium albo-atrum VaMs.102 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticilium;species:Verticillium albo-atrum; 0.90306088 0.910430173 0.8513831 0.805567758 0.823858537 0.817857309 0.82246058 0.818527025 0.868530508 308051089 nrfa Ferrimonas balearica DSM 9799 Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Ferrimonadaceae;genus:Ferrimonas;species:Ferrimonas balearica; 0.915409456 0.954315984 0.92419521 0.881550609 0.912287973 0.92364869 0.848789423 0.904115112 0.946828689 0.899577733 0.867748271 0.848566334 0.782429875 0.858110664 0.836923967 0.894392421 0.931715167 238701375 fthfs Yersinia aldovae ATCC 35236 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia aldovae; 1.037931136 0.987635283 1.043872168 1.047829397 1.049460426 1.040513637 1.026409711 1.048861519 1.019978112 1.007988844 1.019771368 1.073262235 0.943256038 0.969376587 0.948316622 0.968484846 0.998375473 0.972619132 21224837 narg Streptomyces coelicolor A3(2) Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 1.353894245 1.372972529 1.3309994 1.322282569 1.325841045 1.392006722 1.327786558 1.33019169 1.310774851 1.350081468 1.350051722 1.343083596 1.300961714 1.319040222 1.28300937 1.334846983 1.332935769 1.347367995 229825383 pula Abiotrophia defectiva ATCC 49176 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Aerococcaceae;genus:Abiotrophia;species:Abiotrophia defectiva; 0.963364808 0.951489012 0.954582108 0.983114288 0.987000535 0.955687941 0.953802741 0.992896183 0.984382364 0.934787148 0.971615293 0.984223972 0.973393013 0.961581364 0.94702225 0.95222255 0.95708519 0.976236154 146405358 dehh109 Bradyrhizobium sp. BTAi1 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 1.02183908 1.000052102 0.979271103 1.015910542 0.992392051 1.010127689 0.992672075 1.026299261 1.020583233 0.97792571 0.984449075 0.987954577 0.98148059 0.9533353 0.953122973 0.956198965 1.030593211 0.993460945 225194055 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.971520789 0.95177614 0.928958664 0.959156336 0.913633926 0.950247255 0.927303773 0.932115486 0.922693987 0.924899641 0.925430315 0.942331955 0.889511843 0.912863451 0.919486335 0.912035592 0.9264657 0.917833624 78220709 CsoS1_CcmK Desulfovibrio alaskensis G20 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio alaskensis; 1.163614426 1.163558499 1.090336697 1.095469797 1.109551343 1.110804833 1.118986679 1.129102393 1.139575203 1.11166901 1.152696521 1.148916022 1.048770479 1.071612547 1.046307054 1.086993511 1.108257058 1.123192135 116633916 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.812750255 0.874242019 0.944328404 0.85813319 0.840276434 0.860635664 0.84103642 0.801454145 0.908093218 0.900337799 0.908109419 0.86194385 0.875064977 0.926332239 0.863210945 0.878058015 73540662 TIM Ralstonia eutropha JMP134 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 1.406694586 1.405950785 1.362857854 1.354892343 1.371345962 1.399505509 1.32606829 1.34477908 1.366982814 1.360693857 1.354834342 1.349571871 1.34026054 1.334333278 1.323248332 1.347328956 1.393123584 1.384920685 301638295 codh Desulfarculus baarsii DSM 2075 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfarculales;family:Desulfarculaceae;genus:Desulfarculus;species:Desulfarculus baarsii; 0.785737949 0.822770509 0.746312671 0.870279674 156102190 gdh Plasmodium vivax SaI-1 Nitrogen Ammonification NA superkingdom:Eukaryota;phylum:Apicomplexa;class:Aconoidasida;order:Haemosporida;genus:Plasmodium;species:Plasmodium vivax; 0.844172364 0.836745095 0.813450804 0.90054675 0.889967139 0.85354356 0.871897041 0.865695685 0.848667847 0.857692032 0.837113793 0.929607981 0.787111062 0.829383389 0.842434799 0.853098496 0.842180131 0.839978703 112463007 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.805896892 0.826662243 260904008 cmci Brevibacterium linens BL2 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Brevibacteriaceae;genus:Brevibacterium;species:Brevibacterium linens; 1.150670777 1.145955188 1.150830605 1.14007819 1.134989213 1.187706737 1.123388875 1.119596852 1.127299763 1.15960458 1.130595523 1.137411978 1.091684569 1.108891876 1.121800583 1.109378301 1.167386778 1.168471336 160917599 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.81028995 0.807896342 0.791324051 0.824264866 0.808242355 0.80821105 0.80175156 0.779892865 239991741 endoglucanase Streptomyces roseosporus NRRL 11379 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces filamentosus; 1.513773863 1.474793188 1.45789354 1.446876217 1.42871339 1.505079702 1.39203759 1.432381583 1.446349537 1.46449825 1.452494598 1.436566867 1.43572818 1.460016436 1.412671047 1.440863153 1.485741964 1.468696099 68164686 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.919114669 0.912312442 0.945520266 0.936561962 0.961889127 0.964410785 0.987540528 0.97644891 0.915503032 0.957555182 0.956488857 0.930098205 0.89229252 0.883105116 0.902118252 0.927475263 0.895361608 119402011 phytase Aspergillus clavatus NRRL 1 Phosphorus Phytic acid hydrolysis NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 0.827862159 0.848945253 0.815781754 0.821560725 0.820723616 0.812344655 0.860376395 0.847969216 0.851897217 0.83309158 0.826202808 0.852184652 0.816237285 296116847 nitrilase Gluconacetobacter hansenii ATCC 23769 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter hansenii; 0.945094323 0.867666294 0.889331706 0.926739232 0.931860021 0.919077248 0.924272441 0.937018504 0.931772134 0.895730756 0.887406179 0.897158806 0.906008941 0.863803698 0.810075894 0.804424481 0.921719611 0.931922395 46110130 nitrate_reductase Gibberella zeae PH-1 Nitrogen N Assimilation NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Gibberella;species:Gibberella zeae; 1.037656778 1.000213185 0.972319012 0.988775009 0.973411555 1.012707199 0.923117981 1.004896217 0.974904992 1.02328131 0.973447608 0.967019435 0.982623987 0.976435923 0.881218766 0.968660875 0.998640326 1.023491711 365901789 exaa(moxf) Bradyrhizobium sp. STM 3843 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.833391783 0.875569109 0.873705992 0.851083031 0.847280204 0.870783728 0.849376865 0.862629858 0.888201738 0.783023275 0.812724136 0.819311677 0.811574142 0.825110911 87201211 terc Novosphingobium aromaticivorans DSM 12444 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium aromaticivorans; 0.946267596 0.926997497 0.848620882 0.954163245 0.860402989 0.903500746 0.835861412 0.889254788 0.910246262 0.89526859 0.883440062 0.900986003 0.871719694 0.944402929 0.928277612 218355607 ppk Escherichia fergusonii Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia; 1.10242882 1.086932573 1.097722831 1.117546538 1.101326787 1.102965826 1.105603784 1.080388441 1.124523404 1.095517933 1.064104661 1.039655014 1.001492914 1.053613647 1.049332964 1.021235167 1.122480989 1.118450674 303321391 badh Coccidioides posadasii C735 delta SOWgp Organic Remediation Aromatics Other aromatics superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;genus:Coccidioides;species:Coccidioides posadasii; 1.047860443 0.973739046 0.934906032 0.970805286 0.88943841 0.986296577 0.886416301 0.935636202 0.980004157 0.947715246 0.929354925 0.911843676 0.872765128 0.917298793 0.82678714 0.895036224 0.967125148 0.987070499 145962227 phn Vibrionales bacterium SWAT-3 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales; 0.812032529 0.880663256 0.806808309 0.799586333 0.878678913 0.777714554 0.79753778 0.787301042 0.803082191 0.84452457 151302230 aps_apra sulfate-reducing bacterium JHA1 Sulfur adenylylsulfate reductase NA superkingdom:Bacteria; 0.879338259 0.894851511 0.876989373 0.936872566 0.853594381 0.878836827 0.854308978 0.874025806 0.883436621 0.836742203 0.845584737 0.847521432 0.911490012 0.905025246 296023004 amyA Cellulomonas flavigena DSM 20109 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas;species:Cellulomonas flavigena; 1.427946545 1.417462784 1.407985418 1.383540991 1.353103533 1.427395978 1.35557978 1.384949789 1.372450407 1.386673215 1.38137798 1.375652394 1.344538952 1.368095581 1.326571193 1.362192493 1.412284845 1.401957455 379253942 xyla Saccharomonospora azurea NA-128 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora azurea; 1.085837194 1.065733777 1.031798311 1.079860958 1.021276133 1.05695975 1.035596394 1.052577378 1.077228281 1.057107157 1.014641059 1.053680451 1.021107725 1.005360539 0.991391355 1.020320321 1.066172557 1.069856696 302695891 p450aro Schizophyllum commune H4-8 Organic Remediation Aromatics polycyclic aromatics superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 0.835889439 0.866682401 0.858285017 0.870749543 0.842428188 0.887933544 0.867539055 0.867808618 0.818853125 0.79425455 0.827543684 0.792092227 0.859879255 0.815108827 0.846316153 0.869193583 352682128 sucA_DiC4HB Thermoproteus tenax Kra 1 Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Thermoproteus;species:Thermoproteus tenax; 1.150410066 1.146606257 1.106652166 1.123445343 1.105600091 1.15081124 1.121563153 1.116894254 1.120712461 1.121340858 1.09061031 1.100639249 1.091682999 1.098177055 1.034514531 1.089951048 1.14581648 1.156671078 29607183 ppx Streptomyces avermitilis MA-4680 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 1.473889976 1.436793543 1.451443756 1.458504467 1.460294836 1.47296298 1.455390501 1.476061478 1.440664627 1.418104328 1.44964275 1.452127 1.450693194 1.394052466 1.42843116 1.444205391 1.437494109 1.410304842 340029387 ppx Paracoccus sp. TRP Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus; 0.923132403 0.915608418 0.906244134 0.931467109 0.909188893 0.907442204 0.88689957 0.938489626 0.922185438 0.868923436 0.871827387 0.893004727 0.896908597 0.831706373 0.862420037 0.926539592 0.975597693 0.931734997 38637905 norb Ralstonia eutropha H16 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 0.790882234 0.803857283 0.79437931 0.798982669 0.787136197 0.769710278 0.78627485 78494014 urec Rhodopseudomonas palustris BisB18 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 0.972663017 1.073368693 1.008344294 0.971948455 0.933905392 1.024793279 0.913728089 0.920700161 0.973583705 0.970596762 0.971536996 0.940560708 0.873232854 0.876953408 0.919743926 0.915701803 0.978742268 0.998356357 146309965 phn Enterobacter sp. 638 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 1.087325584 1.049583222 1.050233008 1.038084423 1.060349487 1.007540091 1.037403752 1.032326377 1.019669773 1.014434561 1.006625991 1.030653603 1.015443284 1.032716553 0.970039761 1.019435866 1.042972064 1.002540722 285017740 ara Xanthomonas albilineans GPE PC73 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas albilineans; 0.966247428 0.905993836 0.920301828 0.993771576 0.884149386 0.914362617 0.923749186 0.949112269 0.956951326 0.903833119 0.900873992 0.95273596 0.90461325 0.927703475 0.889031959 0.905860185 0.943030277 0.915702874 257479554 amyA Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Alicyclobacillus;species:Alicyclobacillus acidocaldarius; 0.853928718 0.805585812 0.824886292 0.841242344 0.84081571 219939246 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.990517289 1.050524119 1.000318709 1.026258133 1.03380816 1.057696121 0.966843154 0.918936724 0.973667573 1.021138135 1.000058964 0.983358711 1.021025216 0.979210387 1.024930755 0.978352423 1.046857935 1.049759782 86136639 ben_bcla Roseobacter sp. MED193 virulence NA NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 0.95137578 0.851349332 0.896363596 0.858130986 0.892628684 0.856380523 0.860435356 0.874813023 0.871317034 0.867964945 0.86160924 0.890682317 0.880678721 0.82006646 0.834071598 340550630 nirb Collimonas fungivorans Ter331 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Collimonas;species:Collimonas fungivorans; 1.176811363 1.195969459 1.163496119 1.142698422 1.168065729 1.193956143 1.17016493 1.143464326 1.148175423 1.179877679 1.171907931 1.154392717 1.135472038 1.130359654 1.09425028 1.167017031 1.127422984 1.160846626 157804846 aps_apra Rhabdochromatium marinum Sulfur adenylylsulfate reductase NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Rhabdochromatium; 1.129286051 1.109130405 1.079190532 1.154609649 1.079789551 1.134307403 1.107970245 1.10200433 1.123242502 1.128774318 1.076481979 1.109002675 1.075453416 1.083734152 1.039697179 1.065933937 1.137968854 1.112309927 91787940 tfth Polaromonas sp. JS666 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 1.140516327 1.241240291 1.123208368 1.151505856 1.1060006 1.129713811 1.077962752 1.092934198 1.086921779 1.106894574 1.094185081 1.127951384 1.10083598 1.103076968 1.13614261 1.11210854 1.158753294 1.118653315 84386977 dmsa Vibrio splendidus 12B01 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio splendidus; 1.141518023 1.08984691 1.123672037 1.200345829 1.134259513 1.122153955 1.147747746 1.145846488 1.161421672 1.098273997 1.129669341 1.136567961 1.120021628 1.091744582 1.136588303 1.126951605 1.161796259 1.061068733 377578841 amyA Escherichia hermannii NBRC 105704 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia hermannii; 0.850582074 0.833008913 0.800915888 0.807866043 0.81635633 0.805908986 0.852676394 0.825968516 0.811376631 0.874866165 209500592 thl Burkholderia sp. H160 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 0.954183218 0.950951013 0.913213308 0.985862056 0.906640019 0.937444612 0.919979967 0.950818406 0.953232963 0.902329712 0.892182256 0.945672908 0.900735564 0.938155349 0.932314206 0.890424536 0.983827087 0.927460417 323470930 xyll Arthrobacter phenanthrenivorans Sphe3 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter phenanthrenivorans; 1.015840764 1.002057528 1.014420378 1.05137319 0.979447995 0.994965764 0.96457449 0.995291832 1.004501686 0.992388219 0.986931827 0.985657077 0.997598486 1.022917692 332525130 arsm Rubrivivax benzoatilyticus JA2 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Rubrivivax;species:Rubrivivax benzoatilyticus; 1.074265594 1.08957012 1.067446343 1.083621451 1.067882446 1.093461031 1.079805498 1.105106441 1.148383353 1.066553669 1.055122657 1.097778314 1.082079002 1.070447618 1.049207018 1.105671583 1.084257702 1.069167911 347002072 phenol_oxidase Thielavia terrestris NRRL 8126 Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Thielavia;species:Thielavia terrestris; 0.871664359 0.840502428 0.874623191 0.847231566 0.805892251 0.812941953 0.864569484 0.819837332 0.798898189 0.835288618 0.876401402 0.817377769 365864917 phytase Streptomyces sp. W007 Phosphorus Phytic acid hydrolysis NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 1.335381828 1.299898349 1.276475385 1.322771773 1.277616694 1.312711207 1.282357341 1.28529393 1.286117036 1.292096684 1.290660873 1.310632998 1.250781216 1.273924958 1.255980387 1.279204769 1.293683986 1.263920104 145693266 mmox uncultured bacterium Carbon Cycling Methane Methane oxidation superkingdom:Bacteria; 0.81111022 0.794899244 0.802207598 0.782060198 0.790878241 0.82066665 0.86495192 0.805732601 0.806397918 0.812521594 374702802 arsc Pseudomonas sp. S9 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.750252002 0.879484872 0.792324785 0.795387389 0.83825673 207367125 mnp Lentinula edodes Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Marasmiaceae;genus:Lentinula; 0.868284517 0.895846272 0.83389054 0.818441398 0.853853109 0.831827947 0.850940799 0.818184058 0.887148272 0.868561821 402076887 tfth Gaeumannomyces graminis var. tritici R3-111a-1 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Gaeumannomyces;species:Gaeumannomyces graminis; 0.791181877 0.800197634 0.766904127 0.796758492 0.806727359 0.809863788 206684870 ppx Rhodobacterales bacterium Y4I Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 1.29267437 1.265938399 1.260728686 1.27002129 1.219742538 1.279859696 1.251978887 1.262750824 1.268223264 1.248717858 1.221693061 1.26590047 1.20542771 1.236045347 1.160196626 1.215962036 1.278271731 1.239411072 365899646 ben_bcla Bradyrhizobium sp. STM 3843 virulence NA NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.808064648 0.927394646 0.795303876 0.835463384 0.884802085 0.854882526 0.828488947 0.820774414 0.876091254 209956925 TIM Rhodospirillum centenum SW Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum centenum; 1.197190662 1.185465791 1.199205804 1.165143466 1.129939146 1.198838628 1.117458388 1.143700802 1.171288871 1.1803414 1.163367744 1.145768324 1.1436419 1.150663069 1.096259331 1.12406831 1.18999065 1.184374353 121583358 ophc Polaromonas naphthalenivorans CJ2 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 1.196117595 1.163538179 1.178789509 1.151654537 1.11861268 1.147242582 1.106989818 1.139322371 1.164442319 1.146798342 1.088859857 1.158463113 1.106525641 1.094521219 1.110976414 1.11047821 1.194252656 1.17086429 319414029 phenol_oxidase uncultured bacterium Carbon Cycling Carbon degradation Lignin superkingdom:Bacteria; 1.215265574 1.162296338 1.197405111 1.188998746 1.163999085 1.208648465 1.159159577 1.140425644 1.183535135 1.217577876 1.157942955 1.173519197 1.133736979 1.168537406 1.117316701 1.176159387 1.220516637 1.176358584 292487233 cysJ Erwinia amylovora CFBP1430 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia amylovora; 0.83830801 0.804514391 0.905934315 0.864699437 0.94123057 0.870366253 0.817134599 0.917910592 0.885655131 0.912596373 0.841548705 336105479 mer Cellvibrio] gilvus ATCC 13127 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas;species:[Cellvibrio] gilvus; 0.842769929 0.867447261 0.864543187 0.940558269 0.910718917 0.87112194 0.903276913 0.907677579 0.919824746 0.860415738 0.859891962 0.90405209 0.919531806 0.874056569 0.851255633 0.887601208 0.8686122 0.849760643 390453189 mannanase Paenibacillus peoriae KCTC 3763 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus peoriae; 0.832968074 0.855535582 0.838767796 0.852628891 0.866595128 0.841057342 0.868046332 0.801142138 0.883828886 0.830240917 0.839121003 0.83949198 0.837792604 0.8033361 0.81630544 357538235 amyA Lactobacillus rhamnosus R0011 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus rhamnosus; 0.933135234 0.90920128 0.851820798 0.867127006 0.903343561 0.850958818 0.819100109 0.877766829 0.838870862 0.818562688 0.866461518 0.849397601 0.842940323 0.818213252 0.854330245 0.907225254 0.893817351 381369732 chitinase Actinoplanes missouriensis 431 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes;species:Actinoplanes missouriensis; 0.980743098 0.885144875 0.969088085 0.896157016 0.898331614 0.817793534 0.810175024 0.836724576 0.957769823 0.910633404 0.902522238 0.90370974 0.91592211 0.888620064 0.955419375 0.934660714 320147376 amyA Treponema phagedenis F0421 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema phagedenis; 0.879746721 0.828418451 0.869585047 0.913283184 0.821021937 0.815277521 0.944806029 0.909816271 0.897520483 0.842596898 0.866031455 0.873937766 0.817842427 0.907719598 0.829436482 344338068 cellobiase Thiocapsa marina 5811 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiocapsa;species:Thiocapsa marina; 0.910080701 0.893433684 0.885983446 0.996677116 0.903030504 0.959396163 0.93176451 0.936175285 0.938266692 0.901835186 0.886268702 0.952989252 0.851176591 0.871746098 0.894542967 0.90435183 0.953270506 0.907175598 296270573 urec Thermobispora bispora DSM 43833 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Thermobispora;species:Thermobispora bispora; 1.357508784 1.351397735 1.305561114 1.321982789 1.29490005 1.363199772 1.305345507 1.304299982 1.299424934 1.291036928 1.309920041 1.308398892 1.289934491 1.287968834 1.295731593 1.309464279 1.324288397 1.292062842 147886212 phenol_oxidase uncultured bacterium Carbon Cycling Carbon degradation Lignin superkingdom:Bacteria; 1.078020122 1.087581776 1.024903027 1.048704746 1.017695764 1.056820686 1.019595739 1.03178063 1.039593141 1.019282251 1.015042537 1.034108906 1.017159183 1.009308353 0.990912163 1.022604626 1.061413085 1.036648996 229488431 bend Rhodococcus erythropolis SK121 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 0.867208385 0.89127816 0.924119963 0.858801415 0.82788941 0.831306387 0.860479917 0.839600721 0.865442115 0.842561011 0.87916357 0.869691564 296426624 phenol_oxidase uncultured bacterium Carbon Cycling Carbon degradation Lignin superkingdom:Bacteria; 1.028610968 0.959294123 0.991929332 0.987632527 1.005412146 0.990191207 0.993280492 0.990355197 0.98128429 0.999773843 0.987712348 0.950702397 0.922656096 0.895311587 0.871520524 0.95049304 0.897622948 0.94828029 380739132 cysJ Pantoea sp. Sc1 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 0.828684916 0.839372443 0.829168144 0.85357991 0.803098623 389863495 amyA Modestobacter marinus Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Geodermatophilaceae;genus:Modestobacter; 1.068146069 1.062436028 1.028725 1.084344555 0.986190194 1.051576828 1.026835884 1.030234272 1.069237618 1.041996234 1.0340262 1.056262629 0.992989373 1.037179324 0.986583269 1.020464398 1.051903298 1.068488704 46116088 phospholipase_C_fungi Gibberella zeae PH-1 Carbon Cycling Carbon degradation Phospholipids superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Gibberella;species:Gibberella zeae; 0.864469707 0.931093389 0.770500054 0.773155776 0.846784204 0.878375745 21648124 amyA Chlorobium tepidum TLS Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobaculum;species:Chlorobaculum tepidum; 0.811719614 0.796742119 0.827655921 0.782498442 3261674 ppk Mycobacterium tuberculosis H37Rv Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tuberculosis; 0.87399639 0.854138637 0.86916682 0.887841062 0.821972956 0.864114614 0.812962643 0.870403045 0.890037489 0.874837583 0.806718809 0.89110815 0.766866944 0.824899421 0.849483627 1.009273689 0.968684847 288960472 xyll Azospirillum sp. B510 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum lipoferum; 1.099308731 1.078121523 1.080415167 1.064521904 1.017340469 1.06387432 0.994255562 1.035037317 1.052459632 1.049773164 1.044543398 1.061086498 1.020355244 1.031343925 1.005666777 1.064604473 1.073732846 1.060543803 40743169 pcpe Aspergillus nidulans FGSC A4 Organic Remediation Herbicides related compound NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 0.855771926 0.89123614 0.890320529 0.887109135 0.863773827 0.874031888 0.898024436 0.902055835 0.866995589 0.862721398 0.926443958 0.883684761 0.854066254 0.818166778 0.816742248 0.873374968 0.872893304 30526321 nitrate_reductase Pseudochlorella pringsheimii Nitrogen N Assimilation NA superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Trebouxiophyceae;order:Chlorellales;family:Chlorellaceae;genus:Pseudochlorella; 1.153994274 1.143724694 1.170373129 1.232823764 1.181895685 1.104443054 1.144293102 1.20300773 1.183544866 1.120904856 1.110385351 1.187973459 1.11761304 1.07285046 1.091958583 1.115450712 1.118984907 1.135647527 229321226 cysJ Rhodococcus erythropolis SK121 Sulfur Reduction NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 0.920448918 0.943787113 0.953998426 0.95886717 0.960356639 0.988516815 0.965833028 0.966749009 0.966700289 0.931926024 0.951555488 0.926158084 0.920553726 0.89916821 0.995939071 0.902755338 0.962277591 0.92858721 335945804 chitinase Bacteroides sp. 1_1_30 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides; 0.926638891 0.928551635 0.926493621 0.986131049 0.959070758 0.905641504 0.976161413 0.972344142 1.015212065 0.946725238 0.937307351 0.952524422 0.913645243 0.919206421 0.972072264 0.937091045 0.932493238 0.963164567 383636056 amyA Streptomyces chartreusis NRRL 12338 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces chartreusis; 1.439491197 1.395900824 1.388310268 1.413905894 1.374635344 1.428496855 1.391611394 1.393052901 1.391749869 1.391515009 1.379042655 1.401665119 1.350250754 1.34466694 1.315109649 1.376293093 1.42777904 1.372061622 239904998 dsra Desulfovibrio magneticus RS-1 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio magneticus; 0.84595397 0.836428359 0.827767731 0.900725509 0.833118237 0.819507121 0.878968565 0.851422225 0.827626531 0.81054837 0.892349864 0.832613023 32308029 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.985003351 0.939264417 0.951201159 0.996627564 0.958622786 0.999642893 0.980585118 1.01853671 1.003667209 1.014516943 0.953656725 0.98353799 0.930146287 0.960898827 0.926713165 0.960847616 0.986299374 0.935968625 193087361 frdA_rTCA Chloroherpeton thalassium ATCC 35110 Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chloroherpeton;species:Chloroherpeton thalassium; 0.774133801 0.858054084 0.796202182 0.881005943 0.865002761 0.832275399 0.812235632 0.812148717 0.842977232 0.871273549 0.862433255 0.835242904 225568119 ppk Clostridium hylemonae DSM 15053 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hylemonae; 0.823328985 0.793187787 0.873190952 0.821778207 0.819137918 0.858141057 0.806740976 0.821377156 145304829 linb Salinispora tropica CNB-440 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora tropica; 0.979409171 0.90507703 0.901524161 0.953307612 0.902277619 0.95478699 0.849010167 0.910578288 0.956658879 0.933522427 0.947949912 0.892205512 0.884553798 0.918780713 0.933835437 0.925678222 0.95920407 0.913456584 162451309 nfsa_2 Sorangium cellulosum So ce56 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 1.220876342 1.205619625 1.216308748 1.217884384 1.187586195 1.18301782 1.177498158 1.205659483 1.213498307 1.164346684 1.183850883 1.206125066 1.160741956 1.13259954 1.133869153 1.182732943 1.203363382 1.191653377 294473281 pme Prevotella ruminicola 23 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella ruminicola; 0.896449316 0.820535675 0.825794701 0.863286535 0.857390693 0.861093263 119353305 AcnA Chlorobium phaeobacteroides DSM 266 Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeobacteroides; 1.02011901 1.026405252 1.043708303 1.071526543 1.047999011 1.063605643 1.060854257 1.050136773 1.043092097 1.051895829 1.057369729 1.0817578 1.005150596 1.045082906 0.9875777 1.010375477 1.05937289 1.000758848 271969134 cmci Streptosporangium roseum DSM 43021 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 0.947635486 0.968018122 0.901301832 0.937691008 0.904455793 0.91330412 0.888066835 0.884107462 0.958570899 0.9203045 0.860580612 0.901486714 0.88616198 0.893625739 0.878593523 0.892474685 0.952254922 0.965509308 384526225 mer Methylacidiphilum fumariolicum SolV Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Verrucomicrobia;order:Methylacidiphilales;family:Methylacidiphilaceae;genus:Methylacidiphilum;species:Methylacidiphilum fumariolicum; 0.843723901 0.88145746 0.808519954 0.794741747 0.854358241 0.823662971 0.862573089 0.836112633 0.807283323 0.855740694 69936847 urec Paracoccus denitrificans PD1222 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 1.142050773 1.11988564 1.128157898 1.107768288 1.097081101 1.146019285 1.075851389 1.078525398 1.100573559 1.079249694 1.091389902 1.092725422 1.069118532 1.070386529 1.059627431 1.062077732 1.151917019 1.12474487 296426277 phenol_oxidase uncultured bacterium Carbon Cycling Carbon degradation Lignin superkingdom:Bacteria; 0.859227057 0.912322791 0.882337573 0.87004555 0.8731345 0.851028148 0.869643525 0.898110625 0.871231136 0.881163029 0.863619823 0.922411767 0.851817067 0.864038557 381382550 chitinase Caldilinea aerophila DSM 14535 = NBRC 104270 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Chloroflexi;class:Caldilineae;order:Caldilineales;family:Caldilineaceae;genus:Caldilinea;species:Caldilinea aerophila; 1.087051537 0.985669386 1.003130073 1.058976882 0.987941676 0.980797917 0.987289543 1.004106308 1.020972623 0.995871432 1.01677493 1.013072818 0.991008049 0.967573063 0.937245476 0.985474587 1.021783759 0.978768006 374570993 bend Alishewanella jeotgali KCTC 22429 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alishewanella;species:Alishewanella jeotgali; 0.912232038 0.964922971 0.895425947 0.961357414 0.94646752 0.97934433 0.928588392 0.946085045 0.938333397 0.939550087 0.897602959 0.954766762 0.899373938 0.921713955 0.961330305 0.930727585 0.91860431 0.945839926 285026953 tfda uncultured bacterium Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria; 1.006932464 0.998499642 0.96952312 1.014524734 0.997997677 0.994150539 0.936954493 0.987791335 0.979876001 0.969896072 1.001622548 0.99783251 0.991814044 0.968062466 0.961050194 0.961205609 1.042550356 0.990731516 324029611 cda Clostridium sp. D5 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium; 0.998820448 0.976223085 0.96785583 0.998941338 0.931879389 0.934548876 0.95906737 0.917972559 0.974511968 0.963895458 0.924930838 0.975623576 0.968675818 0.939779163 0.952679006 0.965180619 0.992643188 0.982782326 150014776 rubisco uncultured bacterium Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria; 1.128348121 1.116870923 1.119630127 1.119070939 1.125170632 1.103319966 1.11955978 1.095052005 1.143207076 1.130883816 1.135850175 1.148212141 1.084251638 1.079193692 1.046349814 1.093622805 1.146815381 1.157601907 225155684 alginase Diplosphaera colitermitum TAV2 Carbon Cycling Carbon degradation Alginate superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Diplosphaera;species:Diplosphaera colitermitum; 0.801454884 0.784633205 0.765934433 0.835385925 89113935 glx Phanerochaete chrysosporium Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Corticiales;family:Corticiaceae;genus:Phanerochaete; 1.336312951 1.296112565 1.290218069 1.318946928 1.325191306 1.323748509 1.321492132 1.308586632 1.311130291 1.288014457 1.290471262 1.320143022 1.286436893 1.25704937 1.310047348 1.303808359 1.3093986 1.28584751 145253599 tannase_Cdeg Aspergillus niger Carbon Cycling Carbon degradation Tannins superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 0.894422003 0.878976491 0.808995462 0.902499563 0.800363573 0.81474939 0.870777649 0.894492767 0.877289077 0.845489466 0.877022395 0.887523435 84786539 amyA Erythrobacter litoralis HTCC2594 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter;species:Erythrobacter litoralis; 0.89760506 0.911335045 0.909110111 0.926210827 0.915426634 0.923454915 0.948338957 0.887295895 0.934688379 0.976184854 0.91705135 0.961126459 0.898291663 0.907966767 0.880069226 0.874083697 0.927256711 0.937245578 24984054 nitro Pseudomonas putida KT2440 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 0.854865293 0.822797818 0.903572535 0.817903883 0.85646625 0.843074006 0.820220273 0.845052878 0.804404949 0.870974296 0.810995722 0.845493348 297151523 chitinase Streptomyces pristinaespiralis ATCC 25486 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces pristinaespiralis; 0.91548859 0.909346506 0.881756125 0.950869604 0.975286837 0.91188944 0.937897536 0.884868128 0.918226921 0.938212809 0.941602358 0.899835707 0.851249481 0.828456431 0.880928184 0.899460728 0.93552625 299772658 Bacteriorhodopsin uncultured bacterium Secondary metabolism Pigments Rhodopsin superkingdom:Bacteria; 0.875277994 0.90194329 0.907154774 0.85723349 0.933413688 0.841045657 0.874858994 0.91438576 0.890170769 0.838335227 0.827409186 0.830624983 0.924356935 0.913161165 78093554 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.821297532 0.793903492 0.835860812 0.835543033 0.783833035 0.84159864 302445390 vgb Streptomyces sp. C Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 1.156352954 1.133311297 1.129506326 1.153396419 1.126175463 1.140816428 1.12033119 1.114064375 1.153192723 1.115172311 1.103327739 1.133739024 1.09906988 1.078622001 1.104247843 1.094649094 1.140649139 1.123983017 326382798 cysJ Gordonia neofelifaecis NRRL B-59395 Sulfur Reduction NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia neofelifaecis; 0.789571115 0.798536123 0.806756445 349792142 arsc Thiorhodospira sibirica ATCC 700588 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thiorhodospira;species:Thiorhodospira sibirica; 0.792936708 0.870676806 0.813390723 0.789444046 313679187 fccab Oceanithermus profundus DSM 14977 Sulfur Sulfide Oxidation NA superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Oceanithermus;species:Oceanithermus profundus; 0.791258578 0.796843445 0.753598601 0.823146764 291545122 mannanase Ruminococcus champanellensis 18P13 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus;species:Ruminococcus champanellensis; 1.100804303 1.098328334 1.072444927 1.126220182 1.067445802 1.064062698 1.06477737 1.051496742 1.07148739 1.072553401 1.055398661 1.127538234 1.03108558 1.053872852 1.001547995 1.058891628 1.086141174 1.07264548 237747456 arylest Oxalobacter formigenes HOxBLS Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Oxalobacter;species:Oxalobacter formigenes; 0.925794505 0.916508994 0.91057736 0.952224869 0.882591378 0.90294081 0.885852755 1.009616966 0.952298023 0.876592796 0.887428865 0.957907003 0.889042629 0.879043097 0.886557541 0.881779789 0.915606122 0.897420372 340029145 PRI Paracoccus sp. TRP Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus; 1.057745444 0.984576789 1.020508771 0.977119845 0.962575549 0.96412682 0.947543513 0.969608555 1.015256805 0.993783021 1.012208463 1.032212911 0.988378436 0.947537398 0.96552511 0.977372461 1.033641124 0.991516819 38427034 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.994206573 0.962804104 0.944531194 0.968493159 0.900023931 0.928963547 0.8918452 0.929403661 0.949883603 0.929645947 0.896030148 0.982392478 0.909930061 0.921699229 0.924045749 0.92874966 0.970847218 0.968339484 375139671 terc Mycobacterium rhodesiae NBB3 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 0.900601087 0.853754697 0.862559689 0.818870834 0.856765833 0.806172471 0.857141441 0.853955954 0.79813892 0.861118974 0.835395248 0.86708018 0.909047447 294338565 CsoSCA Thiomonas sp. 3As Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Thiomonas; 0.902953415 0.902273589 0.864201644 0.917897996 0.880748 0.872860388 0.82063933 0.925331992 0.943359645 0.888614388 0.850667149 0.90365149 0.866357779 0.932089568 0.897933643 0.917237137 0.932588216 333990074 amyA Mycobacterium sp. JDM601 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 1.181997618 1.237293646 1.184082459 1.165589532 1.160557727 1.209895965 1.1630319 1.142658937 1.17022445 1.186028185 1.167649672 1.154251444 1.12713749 1.152917761 1.123044103 1.137000095 1.169103382 1.1818064 323276046 terc Microbacterium testaceum StLB037 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Microbacterium;species:Microbacterium testaceum; 1.023766628 1.018649794 0.975708013 0.994549486 1.010296901 1.00630186 1.011750602 0.98483471 1.019763025 1.027010978 0.987607101 1.00390761 0.91071776 0.920442149 0.81702609 0.926318374 0.982369167 0.973144556 365275064 catechol Bradyrhizobium sp. ORS 285 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.921722048 0.888264144 0.895239776 0.953603975 0.907704763 0.908308388 0.878280116 0.945365485 0.926553323 0.898649818 0.918481475 0.90338814 0.904256455 0.916866766 0.834953915 0.881059085 0.923724161 0.931799583 146406798 nagg Bradyrhizobium sp. BTAi1 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.839642795 0.839727904 0.856932099 0.821161695 0.83121342 0.809736906 0.912616929 0.810325268 0.825354309 0.877058243 0.822789672 0.840577639 0.800846935 0.865742687 0.884258705 58003123 TIM Gluconobacter oxydans 621H Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconobacter;species:Gluconobacter oxydans; 1.030614027 1.07117323 1.133561205 1.031021819 1.109159065 1.017104203 1.028761037 0.995270042 1.019988332 1.00372698 1.128163696 1.06664464 1.017816419 0.949688372 1.114166851 0.992189589 1.06735872 1.082982677 254043480 xylanase Hirschia baltica ATCC 49814 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Hirschia;species:Hirschia baltica; 0.930459792 0.989019841 0.903005116 0.958850008 0.966194588 0.962010561 0.941024841 0.930553648 0.95201334 0.936319414 0.90493117 0.935093255 0.890420935 0.893368285 0.907876234 0.957959472 0.942536795 0.94625181 396482868 nagg Leptosphaeria maculans JN3 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Leptosphaeriaceae;genus:Leptosphaeria;species:Leptosphaeria maculans; 0.887573197 0.845686154 0.877674083 0.846742917 220909273 CsoS1_CcmK Cyanothece sp. PCC 7425 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 0.915603435 0.96081946 0.974438031 0.971096473 0.966187368 0.930139742 0.928358149 0.963717162 0.982782836 0.988416712 0.964702681 0.991522602 0.882318017 0.93415927 0.878513734 0.917562773 0.999435189 0.956759971 302459478 amyA Streptomyces himastatinicus ATCC 53653 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces himastatinicus; 1.373771179 1.328313715 1.305424745 1.366764112 1.299507172 1.373789636 1.323136106 1.349276687 1.329009629 1.310483371 1.305881245 1.321901461 1.278290136 1.286899149 1.286205305 1.320165046 1.360530861 1.322545969 99035804 phn Silicibacter sp. TM1040 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 0.801113843 0.793823105 0.810020206 0.803205936 0.830864679 0.832953622 0.830897782 0.782213059 0.847075668 0.807639106 0.805582975 0.830143044 0.823767688 0.832370257 292821826 amyA Actinomyces odontolyticus F0309 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces odontolyticus; 1.145155663 1.13331955 1.16072825 1.153463132 1.128212401 1.147332711 1.120981155 1.129145198 1.120406679 1.158104717 1.147569344 1.156535797 1.097814558 1.108120213 1.082211941 1.097204049 1.141938277 1.113184027 77732597 nhh Rhodococcus opacus Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 0.810751141 0.796826286 218645701 phytase Buttiauxella gaviniae Phosphorus Phytic acid hydrolysis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Buttiauxella; 0.824139907 0.833267267 0.864231866 0.886906682 0.832479907 0.790364519 0.824709581 0.857869922 0.877113657 0.831151823 0.802734633 0.907288577 0.855080151 0.851563496 0.904766282 298576008 pula Prevotella oris C735 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella oris; 0.85661135 0.815910959 0.810684256 0.878052204 0.852134028 0.844177626 0.870642699 0.838306478 0.845102277 0.874145563 0.860788733 0.776520177 0.796063418 0.819177664 0.808352404 0.851088535 0.887073889 21646802 dsrB Chlorobium tepidum TLS Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobaculum;species:Chlorobaculum tepidum; 1.050500123 1.061429088 1.06381504 1.037452892 1.05208643 1.046794161 1.015478897 1.024592072 1.023387353 1.039258767 1.013278295 1.040523112 1.024073552 1.026373196 1.010174047 1.038114901 1.055502544 1.064661873 197723216 urec Streptomyces pristinaespiralis ATCC 25486 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces pristinaespiralis; 1.050016409 1.065283884 1.015313367 1.081741162 1.015815557 1.027294018 1.01865058 1.029512064 1.045461165 1.043829079 1.031753459 1.032862541 1.021652707 1.05347183 1.007431773 1.048163935 1.054464389 1.026414715 392520844 pcpe Rhizobium leguminosarum bv. trifolii WU95 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 0.87254226 0.849503345 0.772391326 0.823068386 0.821357393 0.818883469 0.826391846 378580098 cellobiase Pantoea stewartii subsp. stewartii DC283 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea;species:Pantoea stewartii; 0.805648122 0.828295557 0.77938877 0.812668058 0.837025859 0.850767967 0.817375343 0.820523616 0.841515942 0.832146741 0.858683385 0.839690587 151208 endoglucanase Ralstonia solanacearum Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 1.017306344 1.065351479 1.038488237 1.046827939 1.043509843 1.048394486 1.039243215 1.032863122 1.044308954 1.031813466 1.028087183 1.004917737 0.950862882 0.953429409 0.953232526 0.964202207 1.04302377 1.04285611 4803694 ppx Streptomyces coelicolor A3(2) Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 0.911290665 0.918792895 0.877794705 0.89395286 0.90407721 0.890781277 0.840918253 0.857863037 0.870379178 0.904298954 0.880562939 0.840788293 0.824190905 0.856937468 0.850763424 0.828734116 0.925299863 0.967315768 148654650 MMCE Roseiflexus sp. RS-1 Carbon Cycling Carbon fixation 3-hydroxypropionate bicycle superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus; 0.862198149 0.881517135 0.873672755 0.93094736 0.909367857 0.903007989 0.864608116 0.882343629 0.929923694 0.957348575 0.918546724 0.901265717 0.862458455 0.808733206 0.848843271 0.824568253 0.898579793 0.887517714 325965211 amyA Arthrobacter phenanthrenivorans Sphe3 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter phenanthrenivorans; 0.959445795 0.92000864 0.879538142 0.933078408 0.858524855 0.894797698 0.864204424 0.86957026 0.907209271 0.881338031 0.869682343 0.907517215 0.889470252 0.905537177 0.856672149 0.939192781 0.904590968 253574458 amyA Paenibacillus sp. oral taxon 786 str. D14 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus sp. oral taxon 786; 0.921249934 0.976772543 0.877179801 0.913290347 0.909374497 0.951623211 0.903648607 0.846570513 0.902236096 0.945455888 0.85229114 0.879152328 0.895299173 0.883460613 0.854820854 0.900936782 0.953802141 398968539 pcpe Pseudomonas sp. GM30 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.795403076 0.795149167 296420905 protease_serine_fungi Tuber melanosporum Mel28 Carbon Cycling Carbon degradation protein superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Pezizomycetes;order:Pezizales;family:Tuberaceae;genus:Tuber;species:Tuber melanosporum; 0.905534986 0.863076438 0.861473783 0.86704436 0.827185849 0.895962145 0.825349259 0.821814017 0.844694251 0.855841932 0.819604098 0.882601513 0.824128177 0.829182714 0.904853147 0.882243604 0.855618115 26106105 cara Pseudomonas resinovorans Organic Remediation Aromatics Heterocyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.783415442 0.797956882 0.7704731 0.809207526 0.775495622 0.807184752 381167662 FBPase Phaeospirillum molischianum DSM 120 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Phaeospirillum;species:Phaeospirillum molischianum; 1.069994402 1.034620189 1.01883707 1.040966185 0.978641312 1.047665405 1.011745241 1.034961836 1.021315511 1.007485235 0.977395727 1.030013695 0.947636475 0.995970801 0.876476471 1.00289938 1.021180866 1.031479987 340787620 arylest Collimonas fungivorans Ter331 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Collimonas;species:Collimonas fungivorans; 0.98484614 1.018985315 0.990712009 0.998685816 0.971808145 0.983576225 1.002066658 0.986682655 1.016172735 0.968165952 0.965687146 0.976331152 0.967997122 0.92398229 0.898368426 0.912287267 0.974430794 0.98726968 115360323 xylc Burkholderia cepacia AMMD Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ambifaria; 1.074784377 1.079658926 1.045849514 1.049446992 1.033638829 1.068705922 1.016369373 1.03763872 1.063246336 1.070014297 1.026839069 1.078816898 1.034679847 1.038472243 1.001192109 1.043278011 1.046022856 1.084241151 139003556 nifh uncultured nitrogen-fixing bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 1.104277908 1.08705114 1.080693893 1.114904454 1.071290748 1.093925425 1.083746191 1.109205889 1.100378863 1.095626305 1.041665427 1.094158966 1.04089746 1.053881119 1.013555369 1.062781378 1.085273421 1.093678463 238490436 alpha_galactosidase_fungi Aspergillus flavus NRRL3357 Carbon Cycling Carbon degradation Other superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus flavus; 0.777176813 0.793354834 0.81244314 0.815183535 0.857551187 0.841062517 0.866410316 336320621 amyA Cellvibrio] gilvus ATCC 13127 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas;species:[Cellvibrio] gilvus; 1.355508703 1.345022417 1.311354217 1.306221434 1.302540567 1.34134298 1.303262198 1.32024436 1.311509964 1.2991777 1.306555726 1.30280929 1.289824454 1.264438048 1.273960245 1.295292982 1.336808763 1.311389872 294678666 alkj Rhodobacter capsulatus SB 1003 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter capsulatus; 0.809527112 0.967658607 0.832163814 0.924096187 0.907961115 0.840224753 0.912793056 0.871596368 0.880255235 0.875746922 0.8500407 0.928911955 0.86218565 0.830595575 0.812307852 0.844232481 0.887415275 0.873504253 358636900 mdla Azoarcus sp. KH32C Organic Remediation Aromatics Aromatic alpha hydroxy acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 1.206361677 1.249516495 1.176170282 1.216095503 1.183453096 1.218388677 1.176765526 1.181525705 1.183532906 1.169512952 1.173817855 1.190426515 1.187518037 1.156739907 1.154963392 1.168747057 1.205542856 1.207917183 383705117 ppk Rheinheimera nanhaiensis E407-8 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Rheinheimera;species:Rheinheimera nanhaiensis; 1.103518953 1.117437343 1.054755046 1.123580677 1.087736051 1.094043335 1.099322764 1.111841825 1.103171758 1.115112952 1.068849841 1.1035263 1.060121887 1.059917956 1.041062906 1.088275349 1.10135159 1.114518289 319766430 cysJ Geobacillus sp. Y412MC52 Sulfur Reduction NA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 1.264964716 1.246874744 1.245275773 1.235544834 1.243155546 1.262406203 1.221218299 1.248011877 1.211999722 1.221483234 1.228686677 1.227963299 1.213973403 1.206298374 1.211429835 1.246085687 1.286671034 1.232983885 353675637 pectinase (pectate_lyase) Brenneria sp. EniD312 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Brenneria; 1.148586522 1.126629741 1.090903451 1.079267423 1.065224289 1.095858898 1.066814032 1.067352651 1.082458064 1.084377332 1.079090483 1.085025704 1.063785748 1.088112908 1.013689228 1.084858547 1.102384751 1.094246569 148806816 tfdb Bradyrhizobium sp. RD5-C2 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 1.044906667 1.039961432 0.980260849 1.019262058 0.990928975 0.992326622 0.961906033 0.978681096 0.982252878 0.993854031 0.983271967 1.004559869 0.97824148 0.99994905 0.934135011 0.984978868 1.025622081 1.033352941 375093907 ben_bcla Saccharomonospora marina XMU15 virulence NA NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora marina; 0.947976965 0.995562072 0.971564747 1.08182904 1.047178408 0.987646469 1.01327056 0.974409016 1.00494041 1.002112021 1.028804566 1.011176422 1.025027104 0.947487522 0.943848228 1.019982464 0.953527896 0.955176752 251798240 xylanase Paenibacillus sp. JDR-2 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 0.864540996 0.872913236 0.785080948 0.81612906 0.805136911 0.790269178 89274947 bphc Rhodococcus sp. R04 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 1.186900789 1.167817229 1.160974725 1.184882676 1.166801991 1.154443833 1.156066964 1.192435376 1.153492178 1.127047744 1.14917789 1.179975975 1.171050737 1.13189945 1.176018442 1.143214786 1.183523686 1.134722937 133778542 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 1.083380654 1.066568494 1.033124714 1.078010426 1.060141826 1.059385555 1.065829236 1.084104664 1.064886589 1.042078677 1.028185435 1.073865649 1.022035123 0.997234398 1.013243278 1.005693689 1.077512959 1.067539103 167731391 linb Xanthomonas campestris pv. campestris Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas campestris; 1.007315545 0.981137506 0.979802479 1.046735313 0.903706295 0.954448868 0.927798455 0.936532702 1.003910795 0.953347711 0.98243814 1.001444978 0.919625851 0.904764733 0.897142815 0.96298175 1.019453726 0.960864579 257069054 amyA Brachybacterium faecium DSM 4810 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dermabacteraceae;genus:Brachybacterium;species:Brachybacterium faecium; 0.83550945 0.812998536 0.814354973 0.798581916 0.827135196 0.840157705 0.78104429 0.813230229 0.894534978 0.967223124 0.82786296 0.776997992 0.794133972 0.883178242 0.932001209 206679577 proO Rhodobacterales bacterium HTCC2083 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 0.962284001 1.020579972 0.980795713 0.980128513 0.975428683 0.996195983 0.963409536 0.93345518 0.94260496 0.982409529 0.990223063 1.006437232 0.955068301 0.962525451 0.935351563 0.991127009 0.959471904 0.994127245 385668373 chitinase Streptomyces tsukubaensis NRRL18488 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces tsukubaensis; 0.929206597 0.968531275 0.91314108 0.974999576 0.93760391 0.951732919 0.93916219 0.946639431 0.930680869 0.967157364 0.921224683 0.955851699 0.914289056 0.962506913 0.914362089 0.928873779 0.941362056 0.97845326 299133729 ppx Afipia sp. 1NLS2 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Afipia; 0.929968423 0.990329756 0.949134678 0.972850533 0.980593337 0.859929462 0.99698683 0.97968651 1.021040693 0.928764926 0.861956277 0.947961281 0.985782103 0.876722286 1.022479934 0.924248356 0.892348512 0.897498593 182413555 nira Opitutus terrae PB90-1 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 1.227182018 1.194528718 1.160606359 1.220661266 1.174788153 1.159991979 1.157033376 1.136054565 1.204848131 1.169896059 1.185277632 1.223226793 1.165772508 1.126758582 1.130762063 1.167567377 1.181379983 1.150708035 357399566 acetylglucosaminidase Streptomyces cattleya NRRL 8057 = DSM 46488 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces cattleya; 1.304497418 1.288769726 1.289557778 1.294388546 1.266675675 1.320722531 1.283579207 1.269699096 1.293674108 1.310227581 1.29208225 1.292545755 1.259050351 1.249074705 1.236889292 1.264525373 1.304686419 1.290951625 297154738 ara Streptomyces bingchenggensis BCW-1 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces bingchenggensis; 0.910590756 0.904270448 0.874708117 0.87585048 0.918121503 0.88322605 0.85438174 0.892118326 0.825513242 0.807458787 0.873144357 0.887087042 0.872438428 0.793421694 0.872739311 0.896964318 220708117 xylg Geobacillus sp. Y412MC61 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 0.784290432 0.804566148 269786597 fthfs Sphaerobacter thermophilus DSM 20745 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Chloroflexi;class:Thermomicrobia;order:Sphaerobacterales;family:Sphaerobacteraceae;genus:Sphaerobacter;species:Sphaerobacter thermophilus; 0.821363887 0.834250709 0.792961051 0.809602402 0.824436839 0.854443001 297564760 acetylglucosaminidase Meiothermus silvanus DSM 9946 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Meiothermus;species:Meiothermus silvanus; 1.067195593 1.08029653 1.031541486 1.096519633 1.066483145 1.078177988 1.054543227 1.0620796 1.043147899 1.044328346 1.040857464 1.057542597 1.026024863 1.017517628 1.017754624 1.048144006 1.072160656 1.014529219 315500782 arsc Asticcacaulis excentricus CB 48 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis excentricus; 0.897180616 0.934983814 0.924407473 0.875516578 0.885224048 0.897537738 0.897559526 0.896860597 0.883810501 0.915766642 0.869913211 0.88331925 0.83043668 0.84465215 0.790849183 0.891439311 0.887171976 0.901670421 356690409 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.976697502 0.905896112 0.852144034 0.856497725 0.888571219 0.833522813 0.913192681 0.859481965 0.80522872 0.809487086 0.849265622 0.925719797 0.898859974 371445221 mcra uncultured Methanosaeta sp. Carbon Cycling Methane Methanogenesis superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosaetaceae;genus:Methanosaeta; 0.934996872 0.862516611 0.886251137 0.946059682 0.875172322 0.891092403 0.857494185 0.900911973 0.882194287 0.913351022 0.862504268 0.857794931 0.853728475 0.867058383 0.808700683 0.859052861 0.960867179 0.871591588 28377119 amyA Lactobacillus plantarum WCFS1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus plantarum; 1.115039746 1.046530918 1.058856334 1.099417939 1.0981367 1.119086502 1.095476933 1.062074274 1.094207929 1.080139176 1.077685739 1.104143456 1.075467035 1.05244242 1.071613453 1.055316949 1.083354099 1.052958648 29466032 norb uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.838471134 0.850739174 0.858008577 0.808934145 0.91696694 0.833392161 0.938675918 0.839449108 0.85814181 0.953749224 0.939250572 0.888654409 0.911912896 0.933156897 0.817668047 0.886238334 0.845213834 0.831402588 393773897 sdsa Novosphingobium sp. Rr 2-17 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 0.839840416 0.856747632 0.81378148 0.847513598 0.88792817 0.810138631 0.847623319 0.867474026 218551244 chrr Escherichia fergusonii ATCC 35469 Metal Homeostasis Chromium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia fergusonii; 0.896480449 0.886117834 0.908976393 0.93338248 0.846706026 0.894683048 0.879262751 0.879638674 0.898421851 0.90798386 0.879787946 0.899837039 0.863989403 0.859624126 0.858115512 0.869238208 0.941268134 0.92239224 69937812 arsc Paracoccus denitrificans PD1222 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 1.075938402 1.061955503 1.035652364 1.050286293 1.033908921 1.05855057 1.049915691 1.064100382 1.056786191 1.038320779 1.046640407 1.051797483 1.028315637 1.003930713 0.961679609 0.960565543 1.057991195 1.019908519 38570178 mcra uncultured euryarchaeote Carbon Cycling Methane Methanogenesis superkingdom:Archaea;phylum:Euryarchaeota; 1.08056182 1.026642342 1.053410258 1.079655811 1.068778144 1.085437853 1.060156949 1.062259386 1.132217488 0.997476948 1.043507503 1.04044161 1.02261911 1.00521638 1.05277784 1.010743615 1.091605366 1.069814318 288921070 tfda Frankia sp. EUN1f Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 0.844728038 0.932166068 0.828913296 0.939726759 0.896338644 0.948046484 0.852342091 0.90564264 0.801293047 0.901940368 0.830864505 0.933651415 223714270 arra uncultured bacterium Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 0.883305112 0.827262908 0.831891081 0.84091064 0.840649928 0.797811893 0.841885931 0.84576833 0.868464721 0.836064255 0.852821965 0.787607087 0.806610585 294801456 terc Bacillus megaterium DSM 319 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus megaterium; 0.769057673 0.835228241 0.864471955 0.825220529 0.784536677 0.861500561 67543188 arylest Burkholderia vietnamiensis G4 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia vietnamiensis; 1.070388107 1.070832319 1.045575496 1.080412226 1.042766368 1.029511729 1.033609191 1.028443269 1.066867316 1.017396996 1.028762045 1.061223501 1.045547647 0.9936201 1.01233133 1.014668506 1.063110852 1.027599681 336399333 acetylglucosaminidase Prevotella multisaccharivorax DSM 17128 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella multisaccharivorax; 0.90211622 0.883022817 0.899467672 0.920333535 0.914167524 0.896229533 0.945963607 0.952713997 0.893309848 0.911992138 0.897521627 0.915202747 0.829322883 0.808257653 0.812350699 0.893841674 0.90481458 84517008 hbh Loktanella vestfoldensis SKA53 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Loktanella;species:Loktanella vestfoldensis; 0.902072747 0.920253943 0.939231168 0.889026263 0.908685367 0.945967836 0.921338408 0.910590196 0.897341113 0.906558161 0.903145708 0.894072472 0.915546401 0.898107061 0.886767112 0.899958455 0.919548441 0.926971713 320149927 ppk Thermus scotoductus SA-01 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus;species:Thermus scotoductus; 0.938577892 0.908442409 0.826116695 0.937164403 0.885297672 0.941046937 0.870412568 0.918711031 0.931835351 0.906187751 0.939655885 0.834303622 0.855283187 0.845950137 0.851665914 0.990132841 0.926194572 49175459 p450aro Phanerochaete chrysosporium Organic Remediation Aromatics polycyclic aromatics superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Corticiales;family:Corticiaceae;genus:Phanerochaete; 0.889304694 0.887363975 0.91223966 0.932944501 0.920400991 0.859026434 0.954331383 0.958968926 0.931039807 0.911787176 0.88912345 0.889451517 0.875817454 0.852700218 0.815983583 0.828389786 0.900082236 0.913007014 162449708 nrfa Sorangium cellulosum 'So ce 56' Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 0.924712093 0.962648565 0.961015201 0.922782762 0.89030703 0.944318232 0.854777199 0.925987456 0.929125745 0.946774713 0.90568945 0.89898131 0.857271939 0.926097415 0.850322554 0.885630874 0.923217338 0.923648187 184200303 amyA Kocuria rhizophila DC2201 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Kocuria;species:Kocuria rhizophila; 0.872242359 0.968403305 0.916895215 0.924574576 0.917318355 0.906899704 0.877461227 0.859550874 0.885264694 0.888738417 0.879865442 0.927495464 0.872332058 0.849032122 0.891814374 0.880171871 0.91114865 0.937031771 91688603 nbzc Burkholderia xenovorans LB400 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 1.0163967 1.002098569 0.972364688 1.081445037 0.93207066 1.011020654 0.939396445 1.044637661 1.048303348 0.977065135 0.978443194 1.027551981 0.937657685 0.973783888 0.99324498 0.976346838 1.021132741 1.011502607 251799172 ara Paenibacillus sp. JDR-2 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 0.958808387 0.914341832 0.91840299 0.954252838 0.864501514 0.879232802 0.849221083 0.887927012 0.934458951 0.92752958 0.873825681 0.9364138 0.873532706 0.856601067 0.845400573 0.855860218 0.919007366 0.940827269 159140249 tktA Agrobacterium tumefaciens str. C58 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium fabrum; 0.897778431 0.843539573 0.851989669 0.914004401 0.862509207 0.875312421 0.843715234 0.851247828 0.822125203 0.835318765 0.818773459 0.859961688 0.852452051 408483214 cmci Pseudomonas sp. R81 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.861786757 0.878420531 0.864150833 0.942081608 0.803151143 0.855431529 0.879149357 0.899979858 0.911580565 0.859848966 0.815348846 0.878657466 0.849853631 0.818091601 0.827439767 0.922157998 0.90729889 296284999 badh Citromicrobium bathyomarinum JL354 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Citromicrobium;species:Citromicrobium bathyomarinum; 0.969459671 0.843177599 0.896543514 0.924318044 0.902837875 0.910264103 0.887272773 0.970124983 0.885622718 0.844539975 0.854278702 0.933017665 0.889514442 0.847401233 0.88260122 0.855428329 0.856843862 0.853595624 139003150 nifh uncultured nitrogen-fixing bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 1.165938263 1.14146205 1.137793105 1.171494823 1.150351627 1.141683414 1.142648766 1.169906282 1.137825563 1.125758962 1.140425915 1.162921715 1.144021308 1.069760325 1.0868903 1.094052724 1.169232665 1.084576162 221156399 amyA Thermomicrobium roseum DSM 5159 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Chloroflexi;class:Thermomicrobia;order:Thermomicrobiales;family:Thermomicrobiaceae;genus:Thermomicrobium;species:Thermomicrobium roseum; 0.766096532 0.791516447 0.815221946 0.785589755 0.813980801 0.830837631 345873619 b_lactamase Thiorhodococcus drewsii AZ1 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiorhodococcus;species:Thiorhodococcus drewsii; 0.970770731 0.996543559 0.959465331 0.992477285 0.976367545 1.000510131 0.943824048 0.978378172 0.963566001 0.949483397 0.955145624 0.996946688 0.997008745 0.928676558 0.943642852 0.941276958 0.975201352 0.999976956 91788001 nagg Polaromonas sp. JS666 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 0.851940743 0.845857441 0.88944844 0.911980357 0.899995663 0.850002167 0.913404526 0.931063504 0.929234882 0.899787988 0.855431797 0.927343892 0.868000387 0.844494179 0.874695232 0.860375519 0.873069135 0.878851417 164455442 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 0.785282484 0.795718889 0.794756753 0.764461932 0.807742691 0.81612995 0.807133135 0.82674324 0.828785528 0.804495141 90196623 nhh Mycobacterium vanbaalenii PYR-1 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 0.811941521 0.82047977 374613240 cdh Mycobacterium tusciae JS617 Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tusciae; 0.938022361 0.93343796 0.878256832 0.832843748 0.886859605 0.934597518 0.932350049 1.017550696 0.911536208 0.966370177 0.86736701 0.891469877 0.813231625 0.999885146 0.865931932 0.939123863 0.945127352 0.947377053 356481423 phn Mycobacterium thermoresistibile ATCC 19527 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium thermoresistibile; 1.16075904 1.154312695 1.131799539 1.161527844 1.158051388 1.152383074 1.12851123 1.175403781 1.148487597 1.137878542 1.146936601 1.156882872 1.151462999 1.117209596 1.121461377 1.109036098 1.14608793 1.126662368 367466577 catechol_b Patulibacter sp. I11 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Solirubrobacterales;family:Patulibacteraceae;genus:Patulibacter; 1.02171144 0.988132142 0.984469153 1.02505715 1.012845627 1.0242092 0.982963926 1.026457082 1.004726691 0.98756115 0.997241188 1.005473722 0.999781802 0.976265736 0.967163323 0.989558056 1.028370265 0.995974505 218564118 phenol_oxidase uncultured fungus Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi; 0.824478089 0.940251708 0.874950307 0.90239215 0.963223255 0.855081411 0.874085807 0.868611137 0.895617312 1.021914262 0.97126557 0.817069902 0.932382916 0.829385202 357047112 xylanase Paraprevotella clara YIT 11840 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Paraprevotella;species:Paraprevotella clara; 0.9191839 0.899434907 1.008212857 0.905999342 0.877868996 0.868179674 0.859053289 0.901476917 0.929368219 0.857790065 0.981198374 0.875154246 0.838060689 0.880176593 0.864210829 0.96291606 0.885289261 0.90868273 81300049 nira Synechococcus elongatus PCC 7942 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus;species:Synechococcus elongatus; 0.900876948 0.854433312 0.916284642 0.894434711 0.898626727 0.855876116 0.876874471 0.858129363 0.885040685 0.864848765 0.869846111 0.894792441 0.8590291 0.839679846 0.827237709 0.825508444 0.855179415 0.904773691 353209637 PRI Hyphomicrobium denitrificans 1NES1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium;species:Hyphomicrobium denitrificans; 1.038000901 1.027949443 1.014244571 0.999874909 1.010671017 1.028889645 0.985955672 0.950065002 1.000493429 0.959462001 0.999353408 0.975858563 0.954996421 0.986499081 0.982033736 0.945403 1.033878105 1.027736654 238059140 merb Micromonospora sp. ATCC 39149 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Micromonospora; 1.20388451 1.177378672 1.137555089 1.138290963 1.137958826 1.187132271 1.123419823 1.169163565 1.124495824 1.117860903 1.113965242 1.128613757 1.114522245 1.121682394 1.126166849 1.140653955 1.141412041 1.158620063 392421197 arylest Pseudomonas stutzeri CCUG 29243 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 1.50332655 1.447131599 1.471363146 1.485157769 1.462668766 1.496022068 1.455322156 1.469048989 1.475344842 1.448087393 1.457828018 1.464102037 1.445025326 1.403508013 1.419247638 1.444732707 1.486102185 1.431620278 298537420 amyA Azotobacter vinelandii DJ Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Azotobacter;species:Azotobacter vinelandii; 0.845206731 0.844204061 0.86363861 358006079 ppx Agrobacterium tumefaciens 5A Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 1.558203067 1.509431634 1.520450724 1.542173962 1.514489277 1.544947125 1.484798926 1.531547578 1.518570264 1.490749387 1.504848376 1.528289312 1.488416126 1.465685319 1.510130461 1.503692052 1.538980981 1.48834758 206586502 aps_apra Olavius ilvae Delta 1 endosymbiont Sulfur adenylylsulfate reductase NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 0.940116063 1.000810137 0.953267712 0.920647302 0.95271188 0.951578704 0.943229445 0.935514751 0.921274686 0.972675424 0.922059466 0.940294239 0.944351539 0.94637657 0.88261886 0.937848148 0.970848679 0.981142131 183580481 pcag Kocuria rhizophila DC2201 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Kocuria;species:Kocuria rhizophila; 0.966552083 0.884800249 0.899864171 0.937171749 0.896738152 0.897839727 0.90664723 0.875701346 0.914544663 0.945389419 0.926383584 0.926922001 0.848096087 0.898791487 0.845659674 0.873444155 0.892208046 0.926104324 118424487 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.950842076 0.925065512 0.953407245 1.014042232 0.930652971 0.932756459 0.946381746 0.950509315 0.978852797 0.963037837 0.928932504 0.951834488 0.912472487 0.914128188 0.896013887 0.924955438 0.963185023 0.92958918 261338283 amyA Bifidobacterium gallicum DSM 20093 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium gallicum; 0.780691219 0.806979907 0.80350968 0.896816364 0.859956948 0.862665583 0.865472466 0.859714342 0.791784871 0.839607057 0.826945813 0.885605854 0.810842214 0.811538174 0.823692074 0.867181518 0.865510031 271502298 pectinase (pectate_lyase) Dickeya dadantii Ech586 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya dadantii; 0.992708993 0.992900775 0.994002615 1.050908172 0.925376467 0.963873383 0.940384389 0.983617723 1.020662583 0.986445497 0.974226407 1.012627066 0.931425233 0.94116963 0.923239652 0.953932198 1.022298665 1.002512069 371956778 amyA Prevotella micans F0438 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella micans; 0.828747896 0.799128324 0.864462115 0.824821456 0.806482506 0.832886487 109452501 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.169819276 1.150099402 1.105260874 1.112015454 1.109813391 1.137536412 1.124036597 1.128670687 1.111498694 1.101061989 1.09599815 1.112793347 1.098139771 1.114233346 1.094146702 1.114540309 1.123781515 1.118059388 400200620 chnd Achromobacter piechaudii HLE Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter;species:Achromobacter piechaudii; 0.808422681 0.823607175 0.856558963 0.788799718 0.854142846 0.791665687 0.851091115 0.83476034 0.864211448 0.84583827 359733668 bphc Rhodococcus pyridinivorans AK37 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus pyridinivorans; 0.83542823 0.856358346 0.813851941 0.862841138 0.900076088 0.848419524 0.838836546 0.826328369 0.898762054 0.884198854 299798007 nira Amycolatopsis mediterranei U32 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 1.135200162 1.154616394 1.130339085 1.141483672 1.130761817 1.13515643 1.135563829 1.115529854 1.114116894 1.11047896 1.107902091 1.135072791 1.101283722 1.089667169 1.084566156 1.109789614 1.121442617 1.137540761 296118184 ppx Corynebacterium ammoniagenes DSM 20306 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium ammoniagenes; 0.806609063 0.825998429 0.816062753 0.866554371 0.823874802 0.803188522 0.849363904 0.89491053 0.807437483 0.85588222 0.885706089 0.893435371 398157243 poba Pseudomonas sp. GM41(2012) Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 1.044658356 1.058759858 1.01136532 1.082148997 1.022514538 1.090713721 1.028039435 1.016902492 1.067617704 0.989222947 1.016792042 1.141754048 1.02813568 0.980989266 0.966895277 1.046923027 1.04845189 1.033278287 57225463 arsc Dehalococcoides ethenogenes 195 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides;species:Dehalococcoides ethenogenes; 1.000186038 1.00036463 0.949152951 1.000882803 0.957695392 0.938854307 0.990184367 0.968645394 0.973652205 0.926403268 0.935232036 1.00796744 0.946676054 0.895014872 0.932409983 0.925106874 0.947620575 0.942331866 344176257 vgb Ralstonia syzygii R24 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia syzygii; 0.934383627 0.991710066 0.951920672 0.954967181 0.957339121 0.927399859 0.970492604 0.908727771 0.919654602 0.995368902 0.98322216 0.950790313 0.967113785 1.004099455 0.880005465 0.96407729 0.964936863 0.950578663 257126789 amyA Leptotrichia buccalis C-1013-b Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Fusobacteria;class:Fusobacteriia;order:Fusobacteriales;family:Leptotrichiaceae;genus:Leptotrichia;species:Leptotrichia buccalis; 0.859444666 0.851835842 0.811480114 0.83541357 0.790555984 0.828813777 0.813650198 0.779221427 0.83670375 333959781 cysI Serratia sp. AS13 Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia; 0.805383857 0.808774761 0.817417107 0.80355818 0.809315072 0.828908594 320006837 RgaE Streptomyces flavogriseus ATCC 33331 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces flavogriseus; 1.054767385 0.983834172 1.034879314 1.062538501 0.999752295 1.03706371 1.068930885 1.068790342 0.9987829 0.947239366 1.019431532 1.043688407 1.006847581 0.913382243 0.975943465 0.947912474 1.048047012 0.997980742 400386002 pcpe Acinetobacter baumannii Naval-18 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter baumannii; 0.779965203 0.827700469 0.806546304 0.821489781 0.80645992 0.827207825 0.79421319 387938047 mannanase Cellvibrio sp. BR Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio; 0.918448183 0.963809506 0.898611823 0.928052486 0.945489819 0.941302976 0.911625125 0.870174118 0.923595281 0.805818603 0.862938166 0.829866214 0.846677979 0.823609724 0.93859883 0.996099596 238719002 cysJ Yersinia mollaretii ATCC 43969 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia mollaretii; 0.83332669 0.917931781 0.829895169 0.834719794 0.878140727 0.856511088 0.849791886 0.876050557 0.870548433 0.857095703 0.882755454 0.884250028 0.834725729 0.837826362 0.868545316 0.91045066 219939159 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.925966745 0.866836349 0.852597656 0.951120592 0.910620002 0.93934906 0.875358754 0.86025659 0.895330399 0.913515813 0.860159149 0.940000454 0.912671784 0.863923584 0.848101245 0.849801248 0.942174589 0.873090873 339488379 tktA Pseudomonas putida S16 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 0.857741619 0.886917517 0.858351761 0.879841862 0.811570467 0.868502081 0.807006682 0.833942779 0.831504971 0.928213027 0.867397305 0.860496278 0.911900697 311294293 amoa uncultured crenarchaeote Nitrogen Nitrification NA superkingdom:Archaea;phylum:Crenarchaeota; 0.884601261 0.854183284 0.878006397 0.917755177 0.860920099 0.855765664 0.886932304 0.901815384 0.909130663 0.890894189 0.861914871 0.893841348 0.834308652 0.84870229 0.862031421 0.841362131 0.850055001 0.876400376 355336209 xylc Pseudoxanthomonas spadix BD-a59 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Pseudoxanthomonas;species:Pseudoxanthomonas spadix; 0.854219372 0.897972132 0.829759 0.839307395 0.893059575 0.790423636 0.858923968 0.870300566 209401900 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.855201873 0.934825223 0.856932024 0.89363033 0.888824238 0.858102683 0.892350117 0.831753775 0.899829668 0.918073342 0.902988763 0.907412148 0.853827276 0.90875355 0.911895674 0.880270469 0.880726554 0.916250323 217405180 actin_Stramenopiles Phaeodactylum tricornutum CCAP 1055/1 Other Phylogenetic NA superkingdom:Eukaryota;phylum:Bacillariophyta;class:Bacillariophyceae;order:Naviculales;family:Phaeodactylaceae;genus:Phaeodactylum;species:Phaeodactylum tricornutum; 1.14680764 1.177697924 1.15645843 1.180373356 1.149070334 1.187839519 1.112917961 1.132723297 1.143492885 1.143028685 1.123492084 1.145748956 1.136880155 1.111118272 1.082665487 1.142801674 1.172623528 1.143902597 44829101 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.801559248 0.805507971 373546193 amyA Mycobacterium tusciae JS617 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tusciae; 0.840719501 0.83614573 0.793328516 0.868993058 0.861428704 0.802276874 0.799454579 0.84038422 0.802866765 0.857935823 0.812061096 0.814542264 0.881479735 0.799465168 0.814967173 0.831022133 0.870561977 68510362 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.862486103 0.825258934 0.852512478 0.809363402 0.878431957 0.852108575 0.856783703 0.832228729 0.859405595 0.852860343 0.864114803 0.839785053 0.905833979 242215078 mannanase Postia placenta Mad-698-R Carbon Cycling Carbon degradation Hemicellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Postia;species:Postia placenta; 0.779784057 0.835679495 0.820490667 0.801784106 0.834529421 0.844268964 269211194 mer Actinomyces sp. oral taxon 848 str. F0332 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 848; 1.198645631 1.188681227 1.170757786 1.184585701 1.168405094 1.215507489 1.159489273 1.181484394 1.168230695 1.19378365 1.178163835 1.177298484 1.154498997 1.164898443 1.140303746 1.162626777 1.186979577 1.197928077 315592467 terc Thermaerobacter marianensis DSM 12885 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XVII. Incertae Sedis;genus:Thermaerobacter;species:Thermaerobacter marianensis; 0.811798403 0.846644839 0.855730233 0.873193121 0.900360974 0.852232385 0.894514197 0.897075999 0.863352571 0.832878493 0.856176748 0.88721578 0.909130808 0.837498978 0.852941361 0.839933265 1.141261853 171989881 acetylglucosaminidase Exiguobacterium sibiricum 255-15 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium;species:Exiguobacterium sibiricum; 0.833465535 0.853760719 0.877166157 0.858281212 0.875574282 0.907152452 0.852127652 0.853869365 0.902421828 0.880591395 0.81084383 0.828443097 0.842403407 0.831655941 0.827465019 0.83276976 261280908 amyA Paenibacillus sp. Y412MC10 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 0.799268161 0.816001178 0.823075771 0.81841883 87283696 nitrilase Synechococcus sp. WH 5701 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 0.875767794 0.883889405 0.886813914 0.883432872 0.916535256 0.913388837 0.867820207 0.862000694 0.840697567 0.883538042 0.908927514 0.896941198 0.881027223 0.837567169 0.828618961 0.865807336 0.880809212 0.877034721 302863179 bphF1 Desulfovibrio sp. 3_1_syn3 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 1.080921298 1.104963574 1.107597388 1.086540324 1.123452638 1.154818508 1.112730016 1.086096982 1.07939625 1.112063677 1.118018947 1.09170903 1.056242864 1.108365385 1.083422383 1.093953692 1.116561724 1.068476693 239622908 amyA Bifidobacterium longum subsp. infantis CCUG 52486 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium longum; 1.016816142 1.028776342 0.999456522 1.030041929 1.004648519 1.010323153 1.008165078 1.093822821 1.008506023 1.007092319 1.017052362 1.037134379 0.987425307 0.986883942 0.957914462 0.963674977 0.990402352 1.012352483 88787339 nitrilase Synechococcus sp. WH 7805 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 1.04833578 1.031177228 1.040571067 1.043401862 1.037186889 1.063153432 1.062442644 1.062689366 1.036258839 1.019871131 1.04088881 1.025507985 1.025351934 0.984974768 0.995245679 0.987904373 1.058691937 0.999436696 313104973 dsrB uncultured prokaryote Sulfur sulfite reduction NA 0.91454042 0.927635122 0.848882514 0.856639005 0.811110142 0.843372638 0.795178587 0.799314687 0.869576776 0.830230668 0.856853267 0.835050545 0.838415341 0.8948838 83972348 nosz uncultured alpha proteobacterium Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 0.83657089 0.903999333 0.907275186 0.864556983 0.855948014 0.787487009 0.870927062 0.871017004 0.867335036 0.894310853 0.868667732 0.888838056 345428665 nrfa Haemophilus parainfluenzae T3T1 Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Haemophilus;species:Haemophilus parainfluenzae; 0.850817537 0.826982277 0.790857684 0.839679539 117675717 ppk Mycetocola saprophilus Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Mycetocola; 1.139653817 1.143201114 1.125534444 1.161679814 1.109345972 1.160139347 1.11586034 1.146865854 1.12381246 1.137956446 1.120187226 1.178217757 1.106546683 1.141606575 1.099970113 1.139631699 1.146031369 1.127821324 27352833 cysJ Bradyrhizobium japonicum USDA 110 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 0.917236113 0.990963059 0.884327305 0.927752198 0.883812186 0.86203918 0.862591799 0.847103161 0.876903118 0.83144 0.887473346 0.890382712 0.811937607 0.842595747 0.842934838 0.88840654 0.901189155 302530423 alkb Streptomyces sp. AA4 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 0.875751031 0.832736039 0.888211394 0.904408135 0.879999539 0.84265157 0.917853705 0.905131506 0.872071493 0.88551189 0.842983287 0.848962944 0.831363661 0.846319616 0.862878709 0.893558935 342316504 aoxb uncultured bacterium Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 0.800772274 0.887426221 0.824555984 0.883741458 0.805619243 0.816350376 0.793506488 0.847768277 0.831304582 0.79806912 0.872679455 0.852179607 0.825221099 0.863915557 0.869653992 352682292 gdh Thermoproteus tenax Kra 1 Nitrogen Ammonification NA superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Thermoproteus;species:Thermoproteus tenax; 1.084434728 1.064460187 1.019971421 1.085963477 1.090405754 1.054063668 1.05175023 1.093427955 1.095102958 1.035125023 1.014362073 1.05641664 1.07548595 1.04063636 1.039008429 1.061003032 1.079045526 1.008875979 206572840 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.846733595 0.85066828 0.853908426 0.86457032 0.829624064 0.839264581 0.789456572 0.880986374 0.86825562 89053908 FBP_aldolase Jannaschia sp. CCS1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Jannaschia; 0.932548532 0.886877875 0.952697948 0.964601701 0.927454919 0.934082602 0.93180092 0.950619627 0.941392702 0.941773829 0.926077068 0.946655336 0.896159473 0.866884157 0.880939142 0.90200549 0.970823992 0.938959762 113473767 bphF1 Sphingomonas sp. KA1 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 0.925221985 0.869572281 0.876033992 0.844944883 0.909454156 0.915179301 0.871956383 0.877133825 0.879016134 0.902014246 0.888354867 0.883287764 0.926392864 0.900156912 0.890177316 0.908888138 0.934224259 0.936764058 196243766 arsc Cyanothece sp. PCC 8802 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 1.020160485 0.962552031 1.005337759 1.024908616 0.978993113 1.01002941 0.967277065 1.008495352 1.024925359 0.98917427 1.001870329 1.028165463 0.998226691 0.976910093 0.978236175 1.007557088 1.008270571 0.951495703 164455284 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 0.909001894 0.940970887 0.863796674 0.884004856 0.906937663 0.879253693 0.923645183 0.908506688 0.910669045 0.92189391 0.875391922 0.943549097 0.907599003 1.014041042 0.886588518 0.912075107 0.906706496 0.941877213 347532831 amyA Roseburia hominis A2-183 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Roseburia;species:Roseburia hominis; 0.832123564 0.821838554 0.870131463 0.794152191 0.826214642 0.834580392 0.825263389 0.800019539 0.846222417 0.842591751 0.839284088 0.838828516 372471984 beta_agarase Opitutaceae bacterium TAV5 Carbon Cycling Carbon degradation Agar superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 0.848723471 0.801570802 78183208 Rubisco_Glau_Rhiz_Cryp Cryptomonas paramecium Carbon Cycling Carbon fixation Calvin cycle superkingdom:Eukaryota;class:Cryptophyta;order:Cryptomonadales;family:Cryptomonadaceae;genus:Cryptomonas; 1.450886875 1.091324678 1.230009476 1.35253711 1.181946147 1.036198921 1.066681912 1.336757023 1.1761092 1.004886509 0.966677786 1.237337076 1.031694979 1.051599273 1.045437321 1.137816857 1.04765438 1.236709106 337265043 tktA Mesorhizobium opportunistum WSM2075 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium opportunistum; 0.912295489 0.919681647 0.857281333 0.871016489 0.843165012 0.898493749 0.876702469 0.873196245 0.887067083 0.841913655 0.875665012 0.905887707 0.855995481 0.845431099 0.867089631 0.918543158 0.919208746 66801991 narg unidentified bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.816096168 0.847502848 0.83814947 0.831627912 0.853412308 0.795804839 0.810769176 0.831567859 0.81808419 0.828709519 0.833890976 0.828503263 0.823014925 0.825938497 0.843307323 0.850506085 167535450 terc Monosiga brevicollis MX1 Metal Homeostasis Tellurium Detoxification superkingdom:Eukaryota;order:Choanoflagellida;family:Codonosigidae;genus:Monosiga;species:Monosiga brevicollis; 0.925230045 0.927108501 0.905838547 0.910231049 0.849504691 0.869297205 0.871375738 0.921190746 0.949431484 0.91812887 0.887885703 0.96241509 0.854618187 0.860097798 0.859672081 0.865373637 0.910794318 0.930382077 90420449 pcag Aurantimonas sp. SI85-9A1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Aurantimonas;species:Aurantimonas manganoxydans; 1.214386883 1.189184002 1.210468685 1.218281388 1.198768215 1.229974015 1.201618253 1.152399092 1.189447642 1.239720408 1.195627341 1.201443614 1.174576763 1.211643146 1.15293596 1.161371478 1.192703864 1.184417001 178468918 amyA Streptomyces griseus subsp. griseus NBRC 13350 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseus; 1.070521128 1.067944952 1.050317911 1.002276854 1.016614567 1.065159906 1.017230006 0.970351764 1.064449696 1.022933507 1.00796378 0.98506208 0.958600135 0.965041835 0.960256217 0.975155262 1.026263558 1.048082135 239928467 urec Streptomyces ghanaensis ATCC 14672 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces ghanaensis; 1.301208086 1.137723659 1.17156571 1.214662652 1.106830264 1.119088163 1.061405834 1.190689522 1.149516729 1.107883572 1.065672214 1.132085825 1.082810302 1.101646505 1.049914881 1.10768364 1.144814318 1.194824647 116253750 pgk Rhizobium leguminosarum bv. viciae 3841 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 1.201344638 1.175205119 1.151039138 1.203525015 1.156188753 1.176226156 1.15799934 1.172782578 1.169179527 1.162484793 1.145301014 1.180772868 1.160378429 1.151150865 1.12638691 1.14718175 1.205051291 1.168136975 238596433 cellobiase Moniliophthora perniciosa FA553 Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Marasmiaceae;genus:Moniliophthora;species:Moniliophthora perniciosa; 0.813948399 0.810786758 0.780620824 144898530 TIM Magnetospirillum gryphiswaldense MSR-1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum gryphiswaldense; 0.823020987 0.878567208 0.88234768 0.849711943 0.865017263 0.875041696 0.815882745 0.867237686 0.832438405 0.846299041 0.807051693 0.841291886 0.815574036 0.818774762 0.860755399 0.869874982 329902080 bend Oxalobacteraceae bacterium IMCC9480 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae; 1.127912723 1.155946663 1.106621227 1.120380599 1.111238044 1.163783915 1.065618927 1.095202272 1.095858339 1.128534378 1.076745741 1.101247659 1.074979671 1.09732315 1.043678919 1.08868571 1.152001943 1.159249707 371590037 xylanase Rahnella aquatilis CIP 78.65 = ATCC 33071 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Rahnella;species:Rahnella aquatilis; 0.887635371 0.878187983 0.86509754 0.942629945 0.806651638 0.862598884 0.832975955 0.867879673 0.906418426 0.844010553 0.833113788 0.907179942 0.830477834 0.833799937 0.831596068 0.907242878 0.871985996 325965308 badh Arthrobacter phenanthrenivorans Sphe3 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter phenanthrenivorans; 1.091909571 1.124087455 1.173366509 1.109335064 1.129045137 1.147867286 1.195098478 1.106195943 1.098689555 1.192875536 1.123591081 1.081979464 1.079589742 1.079708016 1.050258517 1.124109736 1.106395485 1.116590989 336006580 ccmL Lachnospiraceae bacterium 1_4_56FAA Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae; 1.166227484 1.18289243 1.112578408 1.146240232 1.137347725 1.139953834 1.147817252 1.123454872 1.144648114 1.122125816 1.150094063 1.144081492 1.129683757 1.089703011 1.075183394 1.124557991 1.150318719 1.192016097 295412377 urec Kyrpidia tusciae DSM 2912 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Kyrpidia;species:Kyrpidia tusciae; 0.905815018 0.888799542 0.869169349 0.920084057 0.930041271 0.902852521 0.928252782 0.905512054 0.945062288 0.940117366 0.922685966 0.939424631 0.897781825 0.894530514 0.855413003 0.89332131 0.909620084 0.863430057 55845949 nitrate_reductase Chaetoceros muellerii Nitrogen N Assimilation NA superkingdom:Eukaryota;phylum:Bacillariophyta;class:Coscinodiscophyceae;order:Chaetocerotales;family:Chaetocerotaceae;genus:Chaetoceros; 0.965180151 0.898805683 1.002795882 0.961351866 0.908275927 0.904686108 0.84055667 0.891898293 0.94959808 0.957721853 0.94518619 0.916479418 0.918306921 0.897144229 0.888563683 0.90561531 0.943325501 0.940313709 87281169 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.905476362 0.989399634 0.898440308 0.937511177 0.926404191 0.932779024 0.884293181 0.93908576 0.926599027 0.956197252 0.962808713 0.958925409 0.897736535 0.933994211 0.845297242 0.94720702 0.950845604 0.974000807 254819182 cdh Mycobacterium intracellulare ATCC 13950 Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium intracellulare; 0.911803025 0.903380381 0.852209781 0.887591869 0.865099933 0.892288147 0.809272468 0.832997112 0.895774674 0.942591576 0.902948067 0.859557965 0.808513989 0.878871801 0.829263525 0.852999707 0.906254111 0.907589428 71383766 narb Tolypothrix sp. PCC 7101 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Microchaetaceae;genus:Tolypothrix; 0.921477315 0.956183379 0.88126021 0.899686282 0.921477305 0.936490707 0.896029298 0.899673712 0.910887313 0.953229079 0.932521906 0.973338281 0.962001081 0.924779845 0.916311018 0.951310519 0.943309283 0.915320854 109290256 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.811005669 0.795761273 0.811866535 0.791076422 0.813174937 0.803800056 0.80072789 0.841912822 60476241 dsrB uncultured bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.087361123 1.093271222 1.063908841 1.096762966 1.051823209 1.037234505 1.061583799 1.06918033 1.094539432 1.092452755 1.037006636 1.085579391 1.037058211 1.026078805 1.003923275 1.045804969 1.087170105 1.110899113 157804872 aps_apra Thiobacillus plumbophilus Sulfur adenylylsulfate reductase NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus; 0.786632928 0.801349083 0.802328079 0.831385597 62392076 bphc uncultured bacterium Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria; 0.786313278 0.796038571 0.821496822 0.756042344 229823905 amyA Catonella morbi ATCC 51271 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Catonella;species:Catonella morbi; 0.905626193 0.855163857 0.840644505 0.858994687 0.891809951 0.899183314 0.924978549 0.871319307 0.85497024 0.907071121 0.84011628 0.874734438 0.855418136 0.919466407 0.84572124 0.851160061 0.86842675 0.914188228 148499796 vana Sphingomonas wittichii RW1 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 0.839673313 0.921723765 0.858946264 0.888706773 0.92580989 0.907689069 0.852341013 0.786245818 0.851916118 0.859004544 0.808252986 0.838288238 0.890150116 0.871380916 0.831944129 0.896246199 0.886220382 0.92423572 119720171 PEPC Thermofilum pendens Hrk 5 Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermofilaceae;genus:Thermofilum;species:Thermofilum pendens; 0.936458395 0.95223436 0.9293308 0.939112475 0.859261053 0.934583622 0.875078693 0.921837005 0.944610359 0.931675233 0.908763279 0.885750797 0.826662817 0.868117821 0.870580697 0.904181327 0.962866189 17431979 norb Ralstonia solanacearum Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 1.030737076 1.027963344 1.035562907 1.031610108 1.006274241 1.027896898 0.99891771 1.022623211 1.021790597 1.022462939 1.029941903 1.023289721 1.009599061 1.016960106 1.040491894 1.019060196 1.017057774 1.015919998 90023510 chitinase Saccharophagus degradans 2-40 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Saccharophagus;species:Saccharophagus degradans; 1.100887484 1.085336416 1.091304891 1.085126511 1.126585649 1.113950069 1.093682088 1.094239924 1.063700076 1.075193846 1.108794827 1.097029421 1.094917149 1.053505546 1.055434199 1.065702451 1.095834624 1.086681613 118424476 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.943134565 0.9017532 0.949577085 0.946089314 0.934295399 0.95702588 0.93117441 0.906662192 0.927845378 0.991429336 0.969502714 0.941175401 0.875830741 0.890300667 0.814463294 0.918834363 0.91727422 0.885209882 389661918 ppx Nitratireductor aquibiodomus RA22 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Nitratireductor;species:Nitratireductor aquibiodomus; 0.933116464 0.898727004 0.89626279 0.947537562 0.923668881 0.893326924 0.910636431 0.915235124 0.909150063 0.912854764 0.91202319 0.940869902 0.851646611 0.813934171 0.874715449 0.920135283 0.933667122 196182586 amyA Microcoleus chthonoplastes PCC 7420 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Coleofasciculus;species:Coleofasciculus chthonoplastes; 0.992346699 0.950469165 0.947695919 1.040956213 0.964909882 0.958291113 0.966192408 0.994696316 0.977663352 0.974656722 0.920149525 0.983194657 0.973685359 0.935737348 0.963172818 0.975437197 1.021394209 0.973897263 373466200 amyA Lactobacillus kisonensis F0435 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus kisonensis; 1.119660655 1.054755346 1.055254816 1.061442817 1.02943893 1.086053462 1.038810345 1.068137321 1.077602851 1.053083086 1.066834275 1.059929719 0.982726269 1.006389534 0.967828329 1.028162646 1.070755232 1.049163164 306517684 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.101265217 1.078556398 1.086652891 1.08559895 1.040554784 1.111074482 1.070760917 1.089392692 1.067554178 1.087317509 1.061066812 1.068984623 1.032952791 1.072356311 1.000489306 1.052827946 1.08923733 1.065131357 149360104 amie Marinobacter algicola DG893 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter algicola; 0.906742574 0.985178543 0.81553355 0.937306278 0.892906452 0.923627334 0.850040147 0.883139436 0.851080304 0.96480966 0.812801309 0.888429486 0.870681019 0.873442365 0.857208276 0.924671885 0.921575616 0.929895112 13423803 amyA Caulobacter crescentus CB15 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter vibrioides; 1.112505471 1.064915739 1.032598819 1.104705552 0.993641061 1.02394409 0.988255957 1.043777193 1.05639223 1.024621328 1.01477565 1.044737323 0.98521913 0.971112187 1.035512504 0.987326589 1.13107704 1.064699587 377578931 narg Escherichia hermannii NBRC 105704 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia hermannii; 1.108237812 1.181682618 1.145322017 1.099137458 1.129542852 1.150176019 1.083971973 1.080584562 1.069529346 1.116294997 1.100530583 1.089173797 1.086241698 1.099737619 1.062185571 1.089114141 1.133585698 1.16556186 219814339 amyA Pseudomonas extremaustralis Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.899753401 0.836996319 0.794983494 0.859381124 0.875463957 0.826236349 0.874027121 0.820400863 0.839526255 402821024 xylg alpha proteobacterium IMCC14465 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 1.195180165 1.180244134 1.188150857 1.221217437 1.191293321 1.199910268 1.152006314 1.223068862 1.193816639 1.15344748 1.154452279 1.199758699 1.193479944 1.149240168 1.198929752 1.189949488 1.188991928 1.160056184 126236097 tfda Mycobacterium sp. JLS Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 1.454877258 1.424445054 1.43119282 1.43518364 1.379171354 1.433782962 1.360643225 1.390833624 1.394648714 1.390233314 1.405626061 1.397665857 1.383622678 1.377368558 1.356345127 1.393216544 1.428653938 1.393417861 261250370 cysJ Vibrio orientalis CIP 102891 = ATCC 33934 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio orientalis; 0.889563162 0.893515264 0.883964238 0.911775453 0.84163547 0.876023329 0.900876059 0.874742385 0.882655 0.857713726 0.852632643 0.881444073 0.870185983 0.839937585 0.82847146 0.823163199 0.880499469 0.920608773 151368479 phenol_oxidase Hemimycena crispata Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Tricholomataceae;genus:Hemimycena; 1.593810125 1.548685562 1.557662596 1.552440916 1.507775937 1.550301515 1.522505036 1.557632727 1.538388043 1.530460817 1.522568311 1.546309951 1.489873943 1.485082261 1.487772756 1.524336312 1.554403535 1.52347495 119225904 catechol uncultured bacterium Organic Remediation Aromatics Other aromatics superkingdom:Bacteria; 0.913362024 0.875516821 0.857140083 0.940332781 0.822084017 0.922602763 0.910814665 0.940323497 0.873078625 0.917274489 0.848429119 0.807000898 0.846081156 0.860511503 0.885809555 0.91224687 296850197 amyA Meiothermus silvanus DSM 9946 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Meiothermus;species:Meiothermus silvanus; 1.082527901 1.024334213 1.060379105 1.067461345 1.056455341 1.050925574 1.01130508 1.078673555 1.059240116 1.039190233 1.026841752 1.031932718 0.979289108 0.975453517 0.975422925 0.970752682 1.038694428 1.013486619 118469348 amyA Mycobacterium smegmatis str. MC2 155 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 0.798360183 0.801713622 150395437 arsc Sinorhizobium medicae WSM419 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 0.999944228 0.994427477 0.987731515 0.978391983 0.88771529 0.976087519 0.911840622 0.94909476 0.985906087 0.957771702 0.949555791 0.915886236 0.947055688 0.924035268 0.875175183 0.917855333 0.989377898 0.990649843 334132849 xylj Methyloversatilis universalis FAM5 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Methyloversatilis;species:Methyloversatilis universalis; 1.073446705 1.047517313 1.047946068 1.053183319 1.063645424 1.041482284 1.054996137 1.039745747 1.045867063 1.070412444 1.053990489 1.056266377 0.98902746 0.9938734 0.998803334 1.001241681 1.098361458 1.070563955 288316040 cellobiase Enterobacter cancerogenus ATCC 35316 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter cancerogenus; 1.01513195 1.039985779 0.971034822 1.022674646 0.992591697 1.015476403 0.982113973 1.004113004 1.007313379 0.955205167 0.975029626 0.987969593 0.95903303 0.9469214 1.010121406 0.988950556 1.018770773 0.997602706 254818496 cutinase Mycobacterium intracellulare ATCC 13950 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium intracellulare; 1.321988032 1.286652383 1.290676012 1.298754667 1.265612143 1.295527135 1.264120339 1.292416668 1.284021451 1.263549694 1.264628115 1.274375091 1.234144257 1.223904375 1.215812228 1.250568785 1.291738084 1.291630766 134034460 mer Streptomyces sp. Is-BDOE1 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 0.816567856 0.833477524 0.871058331 0.858415135 0.856595569 0.855458626 0.851101239 0.85613127 183582047 urec Kocuria rhizophila DC2201 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Kocuria;species:Kocuria rhizophila; 1.395808014 1.392069607 1.356623717 1.350179558 1.361150247 1.405327709 1.344239396 1.341310319 1.341778542 1.351478066 1.34925987 1.352694092 1.340882973 1.335034924 1.340978845 1.354071758 1.37263449 1.355358453 83837939 mer Roseovarius nubinhibens ISM Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius;species:Roseovarius nubinhibens; 0.862434482 0.821279821 0.890820053 0.911820516 0.803283043 0.853491453 0.906062893 0.948409576 0.898886987 0.859151224 0.908303757 0.860263334 0.839524864 0.852452415 0.876063414 0.879325067 333739060 cellobiase Treponema primitia ZAS-2 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema primitia; 0.857053627 0.850125447 0.859966 1.020774465 0.851443938 0.818289926 0.855658494 0.868305587 0.921315072 0.895629116 0.855508707 0.891241956 0.85063584 0.887692803 0.864090524 0.88060883 0.832988754 60476326 dsrB uncultured bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.742969538 0.813126845 379057456 amyA Serinicoccus profundi MCCC 1A05965 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Serinicoccus;species:Serinicoccus profundi; 0.951113491 0.817666611 0.863572257 0.87284937 0.865883553 0.795937849 0.882767619 0.874746121 0.838967339 0.826255965 0.811237491 0.817987603 0.812257614 0.850926126 0.823390255 126013330 mcra uncultured archaeon Carbon Cycling Methane Methanogenesis superkingdom:Archaea; 1.039215007 1.002937851 1.009622859 1.04121768 1.014846863 1.00654487 1.016376688 1.035877542 1.022012167 0.973675958 1.024228238 1.052136003 0.997034064 1.006839173 1.009226661 1.046260032 1.017348084 0.949954543 260422773 phn Citreicella sp. SE45 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Citreicella; 0.939962313 0.943724062 1.005675718 0.932424272 0.997954654 1.005384528 0.957079114 0.851967483 0.908409459 1.013121148 1.095052954 1.11846866 0.854854802 1.007964942 1.054091003 0.898441904 0.911647883 0.942419446 67900830 glucoamylase Aspergillus nidulans FGSC A4 Carbon Cycling Carbon degradation Starch superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 0.82939835 0.793811882 0.856797025 0.838059424 161385726 nhh Phaeobacter gallaeciensis 2.10 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 0.83748832 0.873133572 0.830279408 0.773323643 0.820497463 0.806850977 0.810489813 0.796597599 0.847400743 0.867733868 51855540 dmsa Symbiobacterium thermophilum IAM 14863 Organic Remediation Others NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XVIII. Incertae Sedis;genus:Symbiobacterium;species:Symbiobacterium thermophilum; 0.809000309 0.833688152 0.917221162 0.903996269 119956954 ophc Mycobacterium vanbaalenii PYR-1 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 0.925781291 1.007606451 0.890827536 0.919459631 0.929734495 0.991773101 0.876969767 0.91694666 0.914525068 0.909797983 0.881119438 0.934181838 0.909938132 0.916113255 0.890234335 0.873962715 0.950343556 0.973490113 73538014 phn Ralstonia eutropha JMP134 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 0.946122566 0.974704521 0.93791723 0.947725569 0.962168722 0.960770267 0.935408066 0.920967993 0.930554343 0.954615663 0.934451143 0.912206891 0.958310586 0.961284294 0.898486362 0.932280545 0.966843842 0.959251491 196482332 tfda uncultured bacterium Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria; 1.062533811 0.895578843 0.917739753 0.859583405 0.888269553 0.98265567 0.896272338 0.971291859 0.955130229 0.993117765 0.948614241 0.930499471 1.020164153 0.932491693 1.003433058 0.986986699 0.989230675 0.95097758 120596609 phtb Polaromonas naphthalenivorans CJ2 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 1.032256882 1.00542964 1.062302375 1.046712743 1.034917402 1.133699018 1.061215151 1.059477037 1.0738839 1.082955984 1.015008896 1.009666057 1.016402283 1.072988673 1.055472775 1.002461005 1.036097881 1.03552663 310763393 nbac Achromobacter xylosoxidans A8 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter;species:Achromobacter xylosoxidans; 0.953539857 0.924836288 0.970633347 0.991066107 0.96538405 0.941517419 0.998060458 0.983976728 0.974467766 0.952886906 0.918911397 0.943900527 0.944936181 0.883766816 0.841127579 0.923735992 0.947248104 0.950420723 383822960 limeh Mycobacterium phlei RIVM601174 Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium phlei; 1.46648199 1.421366808 1.411267682 1.436202346 1.390416271 1.458893864 1.410216201 1.423827389 1.405061541 1.403130496 1.401114398 1.419931928 1.368520185 1.375741399 1.360801853 1.404623983 1.428790835 1.394201855 387887466 xyla Escherichia blattae DSM 4481 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Shimwellia;species:Shimwellia blattae; 1.09979726 1.105162885 1.025215383 1.053560239 1.000367762 1.034049648 1.00409664 1.01815044 1.056444738 1.054442441 1.01339547 1.033481497 0.997989306 1.023612111 0.948716368 0.996713905 1.058244098 1.079058877 334860598 amyA Frankia symbiont of Datisca glomerata Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 1.133211857 1.160453908 1.182797914 1.169378082 1.155484735 1.193873784 1.191144229 1.195716134 1.184538103 1.157892561 1.154533639 1.161028857 1.127178744 1.112789909 1.116697517 1.168698385 1.213608142 1.159049607 14192843 one_ring_23diox Porphyrobacter sanguineus Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Porphyrobacter; 1.094689881 1.152033367 1.094386235 1.086381974 1.069720569 1.098095356 1.045950194 1.073551056 1.102387219 1.079936246 1.074482889 1.066947526 1.043430861 1.061253217 1.015267615 1.045346942 1.082765047 1.090311893 224602944 ppx Pseudogulbenkiania ferrooxidans 2002 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Pseudogulbenkiania;species:Pseudogulbenkiania ferrooxidans; 1.079374149 1.147468298 1.11433717 1.115775325 1.134444598 1.129509328 1.097842329 1.081269875 1.069147599 1.111974681 1.110619554 1.119613494 1.09705037 1.08622255 1.072589926 1.10558778 1.094476146 1.134917898 385699559 nirk Neisseria sicca VK64 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria sicca; 1.318831137 1.309553522 1.279555651 1.299215565 1.299872907 1.311651406 1.285136137 1.252382504 1.284921795 1.254366236 1.253236152 1.28807587 1.283513267 1.247465871 1.239845123 1.273723749 1.308544419 1.254667955 172072012 terc Micrococcus luteus NCTC 2665 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Micrococcus;species:Micrococcus luteus; 1.279619947 1.260129075 1.230116821 1.265374252 1.199227627 1.268604636 1.192204106 1.247027597 1.24762243 1.220146964 1.207753875 1.202736756 1.178848605 1.219692664 1.187357214 1.227889363 1.27034935 1.249644537 356687209 amyA Aeromonas salmonicida subsp. salmonicida 01-B526 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas salmonicida; 0.784408637 0.864712905 0.795215056 0.813353286 0.819156998 0.821601881 409394940 catechol Pseudomonas sp. Chol1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 1.002859355 0.966733851 1.031556531 0.992956874 0.981258602 1.04560395 0.93520262 0.995293903 0.99306707 0.996063345 0.958842292 1.004111887 0.95674863 0.964528691 0.971830628 0.990305988 1.016311649 0.974717493 170738512 SoxC Methylobacterium sp. 4-46 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 1.393328362 1.372297442 1.355182462 1.381234999 1.359874485 1.392262719 1.353581865 1.398605524 1.353436976 1.34649633 1.362528546 1.368098645 1.338781418 1.334540614 1.347222423 1.338530965 1.386379869 1.346247231 312113382 dsra Rhodomicrobium vannielii ATCC 17100 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Rhodomicrobium;species:Rhodomicrobium vannielii; 0.919262782 0.98445458 0.969678784 0.93366879 0.952159567 0.984109609 0.919722751 0.886179273 0.890075299 0.95370796 0.906608176 0.914555649 0.959677228 0.911577845 0.898485586 0.929215133 1.009912978 0.949436607 295114731 amyA butyrate-producing bacterium SM4/1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales; 1.061037223 1.081975914 1.081337516 1.108139619 1.069352936 1.097405422 1.075501288 1.120485754 1.107169534 1.076225378 1.054161999 1.098733359 1.01967546 1.061532895 1.00863718 1.028048343 1.073667869 1.09172865 150864009 phospholipase_B_fungi Scheffersomyces stipitis CBS 6054 virulence degradation NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Debaryomycetaceae;genus:Scheffersomyces;species:Scheffersomyces stipitis; 0.866068271 0.937476717 0.851078336 0.864402144 0.870982423 0.8550357 0.858341829 0.841456786 0.874348843 0.908588199 0.854655829 0.863038229 0.82014339 0.860444626 0.796760511 0.906008689 0.833755869 0.859528016 299754434 p450aro Coprinopsis cinerea okayama7#130 Organic Remediation Aromatics polycyclic aromatics superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 0.947640368 1.083409494 0.980309962 1.023780166 1.046854818 1.033444975 1.034986306 0.983871901 0.997515874 1.028508779 1.046393113 1.092668806 1.062799184 1.001477131 0.967224218 1.053964634 0.964011321 1.00557187 32308019 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.925650166 0.842369122 0.873288277 0.912543279 0.905719648 0.864832607 0.899845465 0.930733427 0.88297485 0.899566046 0.882939467 0.860220868 0.891016739 0.866951502 164455534 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 0.929679186 0.949399388 0.964242945 0.918601753 0.938366794 1.009639924 0.921654521 0.922560649 0.915644722 0.952234159 0.946131074 0.924801346 0.9023881 0.913569496 0.860657944 0.89167791 0.873094664 0.904896815 194364165 arylest Stenotrophomonas maltophilia R551-3 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 1.063298547 0.951570649 0.951035041 1.02387389 0.952562801 1.049678054 0.952339193 0.972583081 0.996573989 0.885602056 0.915298468 0.991366191 0.940167394 0.892673336 0.92963259 0.90363018 1.032550835 0.924572957 138896772 cellobiase Geobacillus thermodenitrificans NG80-2 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus;species:Geobacillus thermodenitrificans; 0.800394729 0.80255401 254461693 soxY Rhodobacterales bacterium HTCC2083 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 1.183481983 1.120327552 1.139658201 1.183619617 1.14327751 1.149765812 1.167682111 1.174821559 1.146315271 1.096887023 1.151314175 1.185173353 1.147237964 1.094926765 1.109391116 1.115985965 1.169331831 1.09926909 330998929 arra Parasutterella excrementihominis YIT 11859 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Sutterellaceae;genus:Parasutterella;species:Parasutterella excrementihominis; 0.867112477 0.92106031 0.933469476 0.921071565 0.886123116 0.93141602 0.920095622 0.889922737 0.899403136 0.945018188 0.942649056 0.911577688 0.892867592 0.898510918 0.931414748 0.911388128 0.899828891 209487036 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.03359929 1.015573674 0.992795836 0.948974728 1.022111931 1.044251801 0.950595886 0.973595198 0.98934183 0.976447109 1.18020007 0.990216578 0.976084778 0.940667155 0.995816334 0.966350702 1.02426054 0.977611937 126249775 dsra Pyrobaculum calidifontis JCM 11548 Sulfur sulfite reduction NA superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum calidifontis; 1.558002341 1.525811063 1.509753037 1.518890744 1.507097247 1.569905819 1.497900877 1.508965808 1.500998561 1.486221961 1.498256751 1.500427301 1.482419939 1.475376682 1.480307599 1.487939125 1.55249171 1.497490516 323365852 nifh uncultured microorganism Nitrogen Nitrogen fixation NA 0.872664241 0.859387721 0.875906915 0.885545892 0.89216878 0.870787457 0.853071395 0.863260937 0.856497233 0.845112926 0.838447352 0.849492533 0.846704324 0.82224556 0.817806762 0.871669729 0.859952972 344338573 FBP_aldolase Thiocapsa marina 5811 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiocapsa;species:Thiocapsa marina; 1.20879569 1.200481463 1.18017838 1.174961937 1.204315364 1.255073242 1.170689043 1.191218006 1.187613489 1.176024162 1.18061751 1.17309384 1.182946346 1.18265956 1.152970253 1.184495195 1.198821806 1.202524636 335337154 nosz Halopiger xanaduensis SH-6 Nitrogen Denitrification NA superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halopiger;species:Halopiger xanaduensis; 0.8104186 0.799857894 0.785777505 0.835510052 0.806236167 0.859766028 0.817866285 390411331 chitinase Terriglobus roseus DSM 18391 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Terriglobus;species:Terriglobus roseus; 0.87078752 0.840281373 0.923661107 0.933423547 0.908916181 0.861151423 0.925220735 0.924564031 0.899349584 0.846866678 0.854964266 0.892344402 0.830738159 0.821360887 0.831198677 0.828935065 0.877763091 0.85270287 302517548 chitinase Streptomyces sp. SPB78 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 1.009245842 1.065866165 1.052212758 1.025457322 1.034556319 1.099203569 1.001285942 1.01337059 1.012129913 1.047889309 1.002490566 1.010257956 0.994072853 1.006136001 0.988338648 0.978567026 1.08589502 1.038798992 290954821 hcab Streptomyces scabiei 87.22 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces scabiei; 0.933072674 0.923438255 0.859712474 0.916334307 0.883714003 0.884212642 0.865301285 0.90033488 0.875070863 0.844322945 0.871809179 0.841660067 0.874174816 0.867488047 0.828231075 0.907121192 0.885187715 257069374 terc Brachybacterium faecium DSM 4810 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dermabacteraceae;genus:Brachybacterium;species:Brachybacterium faecium; 0.829097706 0.866948653 0.852539115 0.867370449 0.890594398 0.813208484 0.822892164 0.843989292 0.852448672 0.865988076 0.838707985 0.814596573 0.885484 0.906553527 67540972 endopolygalacturonase_fungi Aspergillus nidulans FGSC A4 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 0.784382819 0.793052834 0.817725858 0.794783892 0.856506473 0.792765282 0.837013078 0.806761953 0.819682641 0.828326235 0.801616469 0.875426662 0.828536713 334124390 nasa Enterobacter hormaechei ATCC 49162 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter hormaechei; 1.073274963 1.017898769 1.062146588 1.090847624 1.111252828 1.099458377 1.088474783 1.073053821 1.076696946 1.020407104 1.050436499 1.074863786 1.057745703 1.027313346 1.114695081 1.045075579 1.107123734 1.03379837 108765029 mdlc Rubrobacter xylanophilus DSM 9941 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Rubrobacterales;family:Rubrobacteraceae;genus:Rubrobacter;species:Rubrobacter xylanophilus; 1.123343097 1.109992653 1.095854078 1.117394913 1.144163872 1.135974055 1.126579931 1.081789417 1.067139755 1.100702448 1.090604051 1.068003401 1.04746914 1.095555158 1.043856324 1.057263455 1.143662839 1.125855935 206572846 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.762638338 0.848462418 0.818387381 0.788730633 114330063 mer Nitrosomonas eutropha C71 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas;species:Nitrosomonas eutropha; 1.202080947 1.161081641 1.173786939 1.20998421 1.153140249 1.191239814 1.185962657 1.196550659 1.176226941 1.170184571 1.162487596 1.203022457 1.14100283 1.151058695 1.15352029 1.17194877 1.188325672 1.155232949 293605472 nagg Achromobacter piechaudii ATCC 43553 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter;species:Achromobacter piechaudii; 1.09545952 1.001540134 0.955246484 1.031460559 0.978824642 0.995572161 1.026825783 0.998849475 0.934309449 0.94495719 1.008794299 0.978867624 1.048027612 1.047098226 0.926168822 0.961134794 1.026309296 1.015327495 108767050 terc Rubrobacter xylanophilus DSM 9941 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Rubrobacterales;family:Rubrobacteraceae;genus:Rubrobacter;species:Rubrobacter xylanophilus; 1.221860863 1.15635922 1.178934051 1.234265902 1.202862931 1.251878609 1.234568786 1.229915598 1.253983673 1.231907199 1.222361327 1.218984809 1.202993856 1.170600781 1.19314824 1.195444559 1.17106053 1.163888144 326695884 GAPDH_Calvin Acetobacter pomorum DM001 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acetobacter;species:Acetobacter pomorum; 1.064653797 1.061147032 0.918444786 1.031529354 0.980590867 0.94970304 0.946098244 1.053942128 1.065768955 0.965662259 0.940239307 0.99557543 1.012357259 0.963078772 0.933262148 0.92441883 0.996720743 1.002761204 359395430 amyA Halomonas boliviensis LC1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas;species:Halomonas boliviensis; 0.912908867 0.931518889 0.818199076 0.953783163 1.033340739 0.903164571 0.860503241 0.920584367 0.900335175 0.913432787 0.877710657 0.901296976 0.869436381 0.84926697 0.83808791 0.87486789 0.911810349 0.885574215 78693100 xyla Bradyrhizobium sp. BTAi1 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.960876329 0.939367438 0.924323909 0.939646718 0.971247485 0.919818464 1.001923497 0.859866635 0.958734994 0.943086097 0.928249318 0.942779592 0.926013053 0.881254805 0.922476867 0.908988083 0.932466574 0.937424557 365813767 chnb Patulibacter sp. I11 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Solirubrobacterales;family:Patulibacteraceae;genus:Patulibacter; 1.055821603 1.077328295 1.05064709 1.072858191 1.066501446 1.035059875 1.04780113 1.037671311 1.055618634 1.034350049 1.049661799 1.076271697 1.043966019 1.014760724 1.007232552 1.012725597 1.060843586 1.046403298 118650748 nagg Burkholderia cenocepacia MC0-3 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cenocepacia; 1.25642859 1.262666422 1.227858807 1.226146189 1.253781635 1.243096873 1.222630615 1.190695631 1.237751797 1.244465116 1.24855556 1.244326953 1.225022408 1.213093193 1.180194889 1.217673252 1.230430647 1.224888196 302404463 pec_Cdeg Verticillium albo-atrum VaMs.102 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticillium;species:Verticillium alfalfae; 0.958670007 0.93956405 0.943143074 0.994018999 0.91562734 0.943481569 0.906020595 0.954420436 0.951870503 0.938529421 0.899382053 0.974907084 0.924746747 0.909912811 0.883216532 0.90791809 0.996306424 0.969573567 60476002 rubisco uncultured bacterium Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria; 1.241186956 1.238043545 1.199027617 1.181485469 1.21319204 1.235730141 1.209112984 1.206154702 1.200687814 1.200971968 1.212082949 1.195694964 1.160025619 1.175477002 1.101690835 1.184818365 1.176807632 1.211108471 336103127 glucoamylase Cellvibrio] gilvus ATCC 13127 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas;species:[Cellvibrio] gilvus; 1.35058995 1.321941689 1.310050085 1.326386673 1.307333421 1.340167324 1.303262918 1.337298433 1.320209902 1.31425815 1.299606773 1.341786412 1.281104905 1.304757501 1.270507339 1.301383121 1.341722396 1.309112076 49610275 rgl Pectobacterium atrosepticum SCRI1043 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium atrosepticum; 0.785349878 0.846776487 0.803634292 0.801323025 0.846056559 0.824660761 0.826786991 0.797023714 2473 cutinase Ascochyta rabiei Carbon Cycling Carbon degradation Cutin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Didymellaceae;genus:Didymella;species:Didymella rabiei; 1.127527917 1.072320587 1.082851958 1.114507218 1.075106504 1.088743835 1.076820345 1.088182892 1.091184964 1.05494252 1.087367377 1.076546547 1.055010591 1.041069331 1.064284364 1.039646217 1.094487729 1.043472541 14023474 chna Mesorhizobium loti MAFF303099 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 0.893608307 0.886375485 0.869334039 0.857321967 0.834482042 0.956521043 0.830841565 0.822153263 0.847795536 0.887427926 1.006340102 0.879022453 0.82950017 0.871346738 0.903024698 0.85213783 0.903765402 148512466 proO Pseudomonas putida F1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 1.285088804 1.247574021 1.23272997 1.271013484 1.215208333 1.234476051 1.208646179 1.234175887 1.261553479 1.233835782 1.23059204 1.276380476 1.204241171 1.19470875 1.18109361 1.218359194 1.282299573 1.22841062 73534359 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.901925494 0.84961585 0.896541023 0.89703654 0.919709218 0.875410983 0.937443167 0.909382464 0.913519824 0.894500413 0.885292531 0.872416367 0.855464666 0.865550872 0.865051079 84663956 PRI Rhodobacterales bacterium HTCC2654 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Maritimibacter;species:Maritimibacter alkaliphilus; 0.818886469 0.876504584 297559229 amyA Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Nocardiopsis;species:Nocardiopsis dassonvillei; 0.907614702 0.893538354 0.951315944 0.90925862 0.94756681 0.87884566 0.939587004 0.897935173 0.877706489 0.900179054 0.909576975 0.863196316 0.853872167 0.829653072 0.859488306 0.845414693 0.882778754 0.884919359 331695647 cpnc Pseudonocardia dioxanivorans CB1190 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Pseudonocardia;species:Pseudonocardia dioxanivorans; 0.796278581 0.804566628 0.820562416 0.828228251 134099364 vana Saccharopolyspora erythraea NRRL 2338 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 0.99874095 0.975639106 0.928809711 0.956845312 0.90386356 0.955724777 0.892541578 0.959736816 0.952125561 0.932160718 0.928143795 1.010835657 0.90283605 0.942938191 0.8932934 0.94375021 0.941751565 0.914444159 379008882 catechol_b Sulfobacillus acidophilus DSM 10332 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XVII. Incertae Sedis;genus:Sulfobacillus;species:Sulfobacillus acidophilus; 0.808082285 0.807300297 0.819658746 0.828286304 0.813950553 0.841319517 0.831485571 385676001 xylj Amycolatopsis sp. ATCC 39116 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis; 1.270956965 1.254931179 1.228804841 1.244773985 1.235210959 1.265820678 1.241515389 1.24744675 1.235303486 1.213895169 1.231951486 1.230851573 1.245850723 1.243835307 1.206176019 1.198257766 1.288961151 1.2482153 345870731 aps_apra Thiorhodococcus drewsii AZ1 Sulfur adenylylsulfate reductase NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiorhodococcus;species:Thiorhodococcus drewsii; 0.790105903 0.841518906 0.820884465 0.852092174 169846188 phenol_oxidase Coprinopsis cinerea okayama7#130 Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 1.071053034 1.026184261 1.036799032 1.080273503 1.220548132 1.055500098 1.168251243 1.011270476 1.024949748 1.036703829 1.050892854 1.007271923 1.038673338 1.017646316 0.973484906 0.967245806 1.038980547 1.052123615 262273730 tktA Grimontia hollisae CIP 101886 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Grimontia;species:Grimontia hollisae; 0.97845114 0.985007413 0.992343828 1.006834505 1.014293582 1.043274536 1.013564227 1.012190313 0.998045984 0.975616427 0.992457307 0.994980226 1.008169187 0.957666477 0.983584685 0.992136105 0.970362309 0.971007418 388784603 limeh Streptomyces sp. SCSIO 02999 Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 0.809026803 0.7938303 0.801894493 0.882736503 0.872408717 0.849011709 0.793259015 0.800348885 295895262 narg Mycobacterium parascrofulaceum ATCC BAA-614 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium parascrofulaceum; 1.039351672 1.061705816 1.056704735 1.032328318 1.056494183 1.117460658 1.037320338 1.053438105 1.008168031 1.077119449 1.069122824 1.028137952 1.035363003 1.091687819 1.039936629 1.033476314 1.093639502 1.093283992 312869125 amyA Lactobacillus oris PB013-T2-3 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus oris; 1.262338633 1.288458402 1.21605232 1.242922253 1.2175463 1.291444867 1.213848231 1.249473836 1.219400165 1.252916707 1.213522378 1.229842294 1.210753179 1.239983427 1.196275238 1.233041413 1.261511117 1.263185995 53756174 amyA Methylococcus capsulatus str. Bath Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylococcus;species:Methylococcus capsulatus; 0.922209957 0.892660628 0.846814795 0.935572904 0.86710858 0.913904484 0.920208946 0.921646957 0.918841469 0.886597071 0.884186227 0.923634578 0.935023606 0.874700826 0.853962053 0.921231287 0.989552124 0.909281113 126728076 poba Sagittula stellata E-37 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 0.967449234 0.952117047 0.925797754 0.968162947 0.945089722 0.952448127 0.93315015 0.908159996 0.927195337 0.987576216 0.954438824 0.967326634 0.999493745 0.979177335 0.94337847 0.953190579 0.964339764 0.968606791 307633456 ppx Ferrimonas balearica DSM 9799 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Ferrimonadaceae;genus:Ferrimonas;species:Ferrimonas balearica; 1.112257333 1.19352501 1.065174769 1.082712341 0.997656519 1.10043513 1.005414733 1.069130818 1.039201812 1.048081113 1.031775603 1.062463962 1.011256118 1.050131806 1.036946409 1.071727657 1.070362826 1.048881927 254451139 dmdA Octadecabacter antarcticus 238 Sulfur DMSP degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter arcticus; 0.80147327 0.810734551 0.802417149 0.822861395 0.823008785 0.822851889 0.78870307 0.859403708 0.80113526 296265293 mdlc Roseomonas cervicalis ATCC 49957 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Roseomonas;species:Roseomonas cervicalis; 1.205349045 1.214094977 1.184967457 1.205176635 1.187660432 1.232772461 1.206393579 1.187108934 1.185934489 1.202620731 1.183259659 1.214113281 1.157615682 1.192901039 1.131337297 1.189545131 1.198013464 1.190153484 134098523 ppx Saccharopolyspora erythraea NRRL 2338 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 0.976684693 0.976702756 0.977861588 0.993342555 0.973071098 0.976887556 0.966438522 0.981319275 0.985598253 0.987653998 0.999972748 1.008367094 0.990167495 0.968000086 0.970308753 0.990065326 1.000245829 0.957809604 37925044 nifh uncultured nitrogen-fixing bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.928468923 0.911755532 0.977206524 1.031661115 0.926903561 0.918602589 0.966754725 0.958905985 0.942911727 0.954396201 0.991496093 1.025647546 0.906674036 0.926374926 0.872373101 0.947706663 0.936549705 0.922311731 323134638 arsc uncultured bacterium Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 1.22435885 1.204550511 1.195783049 1.173447284 1.188110115 1.221967158 1.196898712 1.140020871 1.204344986 1.229160198 1.187059006 1.202109818 1.141280033 1.135440866 1.097467245 1.185371178 1.178614472 1.200922896 356479560 lmo Mycobacterium thermoresistibile ATCC 19527 Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium thermoresistibile; 0.823738692 0.816819243 0.830134166 0.842330002 0.906501223 0.927954874 0.848268316 0.863652862 0.884545441 0.848717112 0.860543725 0.794420432 0.886934991 0.995591259 0.948947493 0.867073839 0.912501656 91690045 nagg Burkholderia xenovorans LB400 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 0.919651704 0.874116944 0.952891093 0.892283712 0.944705754 0.885924005 0.852061435 0.851583465 0.930195395 0.87863285 0.978684166 0.839876866 0.940447303 0.863870374 0.863751157 0.931339608 0.899209923 0.924848145 111145990 catechol Pseudomonas sp. MT1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.794007868 0.819805333 302680352 phytase Schizophyllum commune H4-8 Phosphorus Phytic acid hydrolysis NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 0.950165465 0.878961952 0.90304893 1.010082566 0.880586596 0.913046239 0.920008986 0.875069228 0.925151571 0.899585764 0.870193595 0.89504195 0.887307212 0.87284586 0.944917653 0.885990469 0.893011364 0.921498006 281305577 cda Prevotella timonensis CRIS 5C-B1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella timonensis; 1.113233612 1.092981449 1.064533702 1.087466697 1.078760049 1.067379837 1.033374532 1.045252972 1.107891098 1.111482847 1.064517718 1.084484328 1.074422479 1.071477376 1.010443542 1.054216606 1.084460535 1.080649503 392855475 bphc Rhizobium leguminosarum bv. trifolii WSM597 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 0.979806463 0.928984709 0.903596115 0.990987213 0.872001398 0.888142806 0.844235522 0.896079018 0.967673912 0.902541674 0.870358989 0.893628245 0.849035092 0.903884665 0.87057889 0.924034411 0.967336425 0.918870583 1001518 TIM Synechocystis sp. PCC 6803 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechocystis; 0.825587967 0.810666499 0.809488253 0.843162784 0.821704495 0.8406252 0.860678236 0.79968145 0.838180155 0.821717101 0.808170973 0.828199133 46917318 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.887553893 0.936635615 0.90301686 0.95565607 0.938099675 0.961144329 0.89035445 0.882719224 0.873070746 0.930733968 0.932759941 0.905149348 0.957729918 0.901112219 0.846436229 0.93953843 0.925027154 0.911100219 239831870 arsc Ochrobactrum intermedium LMG 3301 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum intermedium; 1.316509578 1.31193158 1.285768133 1.293738321 1.287439798 1.31684469 1.296638242 1.294518642 1.276428609 1.280886561 1.284090317 1.295793051 1.281665478 1.272967688 1.290530099 1.312381255 1.294229812 1.280404354 383840599 bend Rhodococcus imtechensis RKJ300 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus imtechensis; 0.925159557 0.930272695 0.816809393 0.879136588 0.877054573 0.911558736 0.874646945 0.866697145 0.900519393 0.877938524 0.800926028 0.843678452 0.807777688 0.830101635 0.776614639 0.817178757 0.84680319 0.879896597 110639751 nbac Cytophaga hutchinsonii ATCC 33406 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Cytophaga;species:Cytophaga hutchinsonii; 1.005844647 0.952682109 0.946216437 0.996652802 0.885764284 0.936115426 0.930257729 0.979802216 0.976351683 0.925147884 0.920377895 0.950669842 0.894824196 0.908499831 0.918016962 0.913186871 0.997857763 0.955555811 345112383 ppx Rhodothermus marinus SG0.5JP17-172 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Bacteroidetes;order:Bacteroidetes Order II. Incertae sedis;family:Rhodothermaceae;genus:Rhodothermus;species:Rhodothermus marinus; 1.049419763 1.016920088 1.085554906 1.066494829 1.038434832 1.056020164 1.061345023 1.056195965 1.05717228 1.030023835 0.992570352 1.022126546 1.004148473 1.011321716 0.98811583 0.978046208 1.111651618 1.051980999 164562256 xylanase Annulohypoxylon stygium Carbon Cycling Carbon degradation Hemicellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Xylariales;family:Xylariaceae;genus:Annulohypoxylon; 0.884061629 0.858467897 0.921640438 0.857487255 0.787800545 0.795287769 0.844684889 0.879814858 0.880539022 0.859095693 0.783862914 0.837939948 0.855510855 0.85053894 0.86556254 17133187 tktA Nostoc sp. PCC 7120 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc; 0.826356117 0.876009482 0.823165656 0.835787125 0.811433859 0.812383717 0.795603869 0.792504567 0.790471025 0.804161048 0.821443624 0.824310401 0.873549204 317477091 amyA Bacteroides eggerthii 1_2_48FAA Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides eggerthii; 0.920555021 0.937736209 0.874956943 0.90619152 0.932032851 0.954249918 0.903932002 0.90270413 0.903139971 0.952088784 0.903900568 0.950313478 0.926608282 0.930109781 0.889160824 0.868483974 0.928123395 0.940424551 114544952 FBPase Roseovarius sp. HTCC2601 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pelagibaca;species:Pelagibaca bermudensis; 1.049363995 0.967520596 0.994358056 0.978426952 0.986035526 0.981617554 0.97618324 0.983105448 0.989098582 0.965147679 0.969576274 0.960326366 0.936405975 0.955902571 0.916659384 0.955358396 0.986680175 0.993434653 315494512 aoxb uncultured bacterium Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 1.016749323 1.073538702 0.946716459 1.087994503 1.058399276 0.949060432 1.03763261 1.019981689 1.038533613 1.053409446 0.949467047 1.018801105 1.022462577 0.955283446 0.865249643 0.980007452 0.993477245 1.012407611 359767201 amyA Gordonia polyisoprenivorans NBRC 16320 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia polyisoprenivorans; 1.259472804 1.242512414 1.226449693 1.23847114 1.295517735 1.258234287 1.21612841 1.207411123 1.238145768 1.196772008 1.267411835 1.267766835 1.213609775 1.191150025 1.187765946 1.20715372 1.259972864 1.230557229 386395203 terc Bradyrhizobium sp. WSM1253 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.939039033 0.82012799 0.908180365 1.067548906 0.965395172 0.823967855 0.901885354 1.011125941 1.027967797 0.908372903 0.912211817 1.055978583 0.921881231 0.852344778 0.961207264 0.911944787 0.937742768 50120161 arylest Erwinia carotovora subsp. atroseptica SCRI1043 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium atrosepticum; 0.821303663 0.877059709 0.880386413 0.916575074 0.840515094 0.894751229 0.84199924 0.86276369 0.919747735 0.856785126 0.852612391 0.853729887 0.869435596 0.865848589 0.866751928 149783455 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.958641421 0.967030318 0.974728534 0.959394685 0.995369049 0.978740645 0.97990703 0.974599786 0.967705857 0.987146949 0.962761223 0.942685937 0.893174058 0.901050672 0.863873233 0.852037911 0.944647063 0.958748231 86772996 amyA Bifidobacterium thermophilum Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium; 1.015404022 1.011432426 0.981256493 1.009039146 0.986827663 1.029062178 0.976655391 1.007180911 0.996372691 1.013845712 0.967525765 1.01981908 0.961167042 0.99704556 0.947303334 0.997179518 1.006530213 1.013424172 302420557 cpna Verticillium albo-atrum VaMs.102 Organic Remediation Other Hydrocarbons NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticillium;species:Verticillium alfalfae; 0.925548209 0.845463686 0.873169375 0.95521103 0.84269475 0.876450279 0.873691996 0.893869838 0.90033799 0.861852302 0.85044249 0.881298085 0.830017833 0.828109318 0.824686106 0.864185957 0.90842194 0.826585934 353674630 ppx Brenneria sp. EniD312 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Brenneria; 0.98334245 0.990007019 0.95430316 0.950694349 0.906705245 0.991629255 0.942002998 0.965694914 0.947254017 0.975974168 0.903941724 0.935847878 0.913522961 0.92540557 0.894094296 0.934838158 0.99709271 1.01116447 150844825 tannase_Cdeg Botryotinia fuckeliana B05.10 Carbon Cycling Carbon degradation Tannins superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Botryotinia;species:Botryotinia fuckeliana; 0.819386706 0.882632406 0.771995071 0.829679497 375132398 terc Vibrio furnissii NCTC 11218 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio furnissii; 1.077948328 1.078165581 1.05153438 1.088393947 1.047609279 1.083657221 1.00759344 1.056757973 1.031232407 1.056040394 1.037567037 1.034944349 1.017236312 1.037094664 1.033521161 1.071949233 1.071589762 1.072918719 290467829 phytase uncultured microorganism Phosphorus Phytic acid hydrolysis NA 1.04823871 0.975939612 1.05124553 1.051980079 1.009803509 1.038738713 1.022615505 1.011212943 1.131673586 0.987068593 1.006104708 1.00983139 1.013159684 0.965519424 1.001005743 0.984337091 1.061902516 1.00907542 376384573 pcag Klebsiella oxytoca 10-5243 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella oxytoca; 1.100670742 1.090775476 1.014221441 1.106764106 1.033024023 1.06431036 1.049041739 1.057384486 1.124181529 1.069543146 0.991972683 1.066782302 0.998780318 1.030970612 0.956044489 1.009855971 1.083167258 1.114453828 159037864 terc Salinispora arenicola CNS-205 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora arenicola; 0.955244494 1.089761936 1.030983138 0.97575137 0.973890049 1.061588329 0.956587349 0.98233143 0.940517587 1.03098286 0.99409899 0.965540166 0.983088177 1.024029766 0.947811657 0.997903906 0.979926205 1.030413273 150423033 exochitinase Vibrio cholerae AM-19226 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio cholerae; 0.761739499 0.918013283 377560400 pcpe Gordonia otitidis NBRC 100426 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia otitidis; 0.820877041 0.858572818 0.866899548 0.853835424 0.857549369 0.809932766 0.840147343 0.845183004 0.854560983 0.831838698 0.830556384 0.801583117 0.823158381 223477673 amyA Thermococcus sp. AM4 Carbon Cycling Carbon degradation Starch superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Thermococcus; 0.965730463 0.944403607 0.983810963 0.95394966 0.983367591 0.973769063 1.001370162 0.975025554 1.034852661 0.96200001 1.004400751 0.977686529 0.9975521 0.929318749 0.958723447 0.959988497 0.927888791 0.954885643 157322525 amyA Serratia proteamaculans 568 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia proteamaculans; 0.995613263 0.917966316 0.957960367 0.949982402 0.967074349 0.955908997 0.918753794 0.978379415 0.953239914 0.960002158 0.887023792 0.966982621 0.920046779 0.926666119 0.92461842 0.910674691 0.968285823 0.973165113 94984767 amyA Deinococcus geothermalis DSM 11300 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus geothermalis; 0.907004879 0.930557409 0.858210057 0.922377317 0.90871021 0.941891892 0.891046782 0.820160299 0.930657843 0.900387381 0.881289235 0.919359064 0.886403202 0.883770453 0.861390334 0.955717103 0.915326731 0.874580279 334133039 exaa(moxf) Methyloversatilis universalis FAM5 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Methyloversatilis;species:Methyloversatilis universalis; 1.158591307 1.110949431 1.165782537 1.205468552 1.164346134 1.169913777 1.180139506 1.212820065 1.162110603 1.124419397 1.152568964 1.150675122 1.13143421 1.101122927 1.108643029 1.099751308 1.174863447 1.136383456 110589380 mdh Endoriftia persephone 'Hot96_1+Hot96_2' Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Endoriftia;species:Endoriftia persephone; 0.75849022 0.820166292 0.771114589 0.862583818 332377411 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.002673184 1.007540597 1.013713435 1.029769108 1.044650272 1.046325344 1.003115675 1.005705494 1.017113784 1.017888909 1.021174428 0.992242688 0.996764016 0.968747996 0.945659281 0.972409686 1.006998242 1.004788716 119497741 amyA Neosartorya fischeri NRRL 181 Carbon Cycling Carbon degradation Starch superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 1.285714822 1.284469199 1.260634565 1.249115377 1.240476807 1.256238147 1.213498785 1.236726493 1.227208406 1.223908393 1.25830195 1.228920041 1.227387702 1.209434124 1.200364638 1.204714737 1.275799967 1.230264308 114316760 exaa(moxf) Granulibacter bethesdensis CGDNIH1 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Granulibacter;species:Granulibacter bethesdensis; 0.868577118 0.865893799 0.901416932 0.928991796 0.897010927 0.807919142 0.918324962 0.89032659 0.844951433 0.893603174 0.892943517 0.870479136 0.834672405 0.919717469 0.853478732 251771517 amyA Leptospirillum ferrodiazotrophum Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Nitrospirae;class:Nitrospira;order:Nitrospirales;family:Nitrospiraceae;genus:Leptospirillum; 0.774817942 0.798732782 167596212 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.771504731 0.812400754 0.827644496 0.843764488 0.83871076 0.794587297 0.804186199 0.832748665 0.819793763 388445109 arsc Rhodanobacter thiooxydans LCS2 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Rhodanobacter;species:Rhodanobacter thiooxydans; 0.801975105 0.868640173 0.851363147 0.86455665 0.878235684 0.821389021 0.817342804 0.823658015 0.795198655 0.821538383 0.854671086 308755290 GAPDH_Calvin Ketogulonicigenium vulgare Y25 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ketogulonicigenium;species:Ketogulonicigenium vulgare; 1.133158852 1.12676626 1.066932947 1.099583542 1.033659675 1.128454056 1.064157831 1.037116512 1.117937533 1.0739905 1.089545159 1.071046715 1.046121349 1.05345905 1.025568994 1.086612321 1.152502902 1.094979528 271969990 amyA Streptosporangium roseum DSM 43021 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 1.108639103 1.086172188 1.067844233 1.12498721 1.058482267 1.09536249 1.040006782 1.06636912 1.098907914 1.057690812 1.058963324 1.067129893 1.062092532 1.038166686 1.036524674 1.039956715 1.125280073 1.073455059 133913518 pectinase (pectate_lyase) Saccharopolyspora erythraea NRRL 2338 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 1.036854329 1.060261911 1.021088524 1.084242174 0.971515875 1.047246275 1.01400228 1.018834732 1.03948382 1.023910379 1.008212155 1.023358731 1.007122082 0.995770606 0.999562271 1.027943654 1.054536044 1.026907575 357037305 dsra Desulfotomaculum gibsoniae DSM 7213 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum gibsoniae; 1.1884732 1.131635376 1.143672656 1.189112487 1.156299206 1.17158243 1.147881797 1.175238177 1.144145973 1.121956571 1.16391174 1.156530941 1.139910144 1.11970686 1.124375328 1.154797387 1.176481894 1.132016959 118439669 fthfs Stappia aggregata IAM 12614 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 0.994073284 0.958570125 0.937038575 1.000480339 0.955715204 0.956628524 0.954861752 0.956398574 0.989130811 0.968824947 0.969205927 0.97938718 0.951241034 0.942856235 0.947673093 0.962529281 0.977211067 0.915836617 342132374 cutinase Mycobacterium colombiense CECT 3035 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium colombiense; 1.080466997 1.051232772 1.03706054 1.063252141 1.0452731 1.068801284 1.05462702 1.055354286 1.050501398 1.024435519 1.063559422 1.055860157 1.061667357 1.014586205 1.037958431 1.024461415 1.080937238 1.056175228 46121363 phospholipase_C_fungi Gibberella zeae PH-1 Carbon Cycling Carbon degradation Phospholipids superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Gibberella;species:Gibberella zeae; 0.849025844 0.849773146 0.826501122 0.85345 0.860416872 0.819415379 0.850794915 0.872697123 0.828715126 0.817168137 0.875288908 0.908140024 319418065 chitinase Bacteroides helcogenes P 36-108 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides helcogenes; 0.778149113 0.805678791 0.825284208 0.765779568 374620194 arsc gamma proteobacterium HIMB55 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 0.862023772 0.843840587 0.866285001 0.850139488 0.811691251 0.849999916 0.826105689 0.853946739 0.833006309 0.89137591 0.886852968 115259785 aln Rhizobium leguminosarum bv. viciae 3841 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 0.890240587 0.925629292 0.872312128 0.92895262 0.864450908 0.889414605 0.902913778 0.916467603 0.896093425 0.933290572 0.908857741 0.911245138 0.886465662 0.868261625 0.828011037 0.884646498 0.827843319 83631795 chitinase Hahella chejuensis KCTC 2396 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Hahellaceae;genus:Hahella;species:Hahella chejuensis; 0.791156592 0.873736378 0.827172438 0.794743723 0.88183198 0.803228793 0.788879932 0.834915262 338165929 one_ring_23diox Cupriavidus necator N-1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 0.988735276 1.011316855 1.019517502 1.019420273 1.013979681 1.021721515 1.006117219 1.023318354 1.092734757 0.995977977 1.039298027 0.985209514 0.98744732 0.951814384 0.938136469 0.977524422 1.067022125 1.022245848 255502823 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.04315629 1.00319298 0.999185778 1.021221659 1.030088419 1.033507487 1.009263753 0.989712638 1.001818976 1.032491624 1.020724719 1.021557388 0.979846945 1.000135851 0.952497553 0.966081196 1.01642319 1.057078105 384919792 amyA Citreicella sp. 357 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Citreicella; 0.8902831 0.866046939 0.871066594 0.933822451 0.863273088 0.843189144 0.832772005 0.892056168 0.894309995 0.868306334 0.898951227 0.876575302 0.896656947 0.897403804 284155447 pectinase (pectate_lyase) Paenibacillus amylolyticus Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 0.937366285 0.877992803 0.940336032 0.987715378 0.931965059 0.954922706 0.958361787 0.993592702 0.955767542 0.901658323 0.933533629 0.91420107 0.89355737 0.844414506 0.906536681 0.867561563 0.960901018 0.878891545 139478541 mer uncultured soil bacterium Metal Homeostasis Mercury Detoxification superkingdom:Bacteria; 1.100736535 1.089117577 1.183763994 1.119129312 1.0765117 1.092536485 1.072692095 1.095956917 1.092056879 1.065902885 1.078654846 1.091623952 1.063059753 1.065257988 1.045548669 1.095637474 1.096316056 1.070041146 126735455 xyla Roseobacter sp. CCS2 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 0.817281139 0.83272893 0.808618559 0.801822723 149200797 phn Roseovarius sp. TM1035 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 1.33781168 1.321369149 1.275556997 1.355988641 1.258483734 1.336640359 1.222504671 1.274710577 1.308666046 1.298118663 1.250732317 1.299357611 1.278980497 1.26829626 1.229707921 1.295604178 1.349185836 1.293360219 356643395 C_CoA_hydratase_DiC4HB Pyrobaculum sp. 1860 Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum; 0.767836774 0.806376179 0.835838216 0.972615706 0.877345272 0.885418786 0.887059019 0.90012737 0.916093807 0.868384839 0.914816411 0.867826046 0.926041026 0.891255987 0.865290837 0.887778788 0.856386675 0.863997931 380732047 amyA Corallococcus coralloides DSM 2259 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Corallococcus;species:Corallococcus coralloides; 0.776315964 0.872373338 0.867324785 0.834411865 0.854030352 0.817684585 0.817668873 0.844812167 0.8114792 0.844197843 0.852211472 0.879228628 253574449 pula Paenibacillus sp. oral taxon 786 str. D14 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus sp. oral taxon 786; 0.804440415 0.814570556 0.812488323 0.827126961 0.822430261 0.841645107 206565052 catechol Klebsiella pneumoniae 342 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 1.127902993 1.087538385 1.09142409 1.129189945 1.108121053 1.105137194 1.075721476 1.154612291 1.113694112 1.090573706 1.071961417 1.147307421 1.058372178 1.086352002 1.117283045 1.116468346 1.11957716 1.118044274 134101440 nirb Saccharopolyspora erythraea NRRL 2338 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 1.132034722 1.096211149 1.083211227 1.12694817 1.104261223 1.117774378 1.127799468 1.090164182 1.139867138 1.094766412 1.092321077 1.109472924 1.067710049 1.100811877 1.078386315 1.100838433 1.136497661 1.09558592 317133580 urec Ethanoligenens harbinense YUAN-3 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ethanoligenens;species:Ethanoligenens harbinense; 0.764559491 0.806022533 0.801603952 0.817008371 222879992 nrfa Campylobacter rectus RM3267 Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter rectus; 0.797465494 0.83251319 0.860132744 0.849639764 0.920848654 0.816445755 0.789021589 0.824992271 0.8826456 0.918404301 294677369 tktA Rhodobacter capsulatus SB 1003 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter capsulatus; 0.823618885 0.808547963 0.781539516 0.818672426 0.861103524 0.804024012 0.809345324 0.791590788 0.816737838 0.831697502 55845965 nitrate_reductase uncultured eukaryote Nitrogen N Assimilation NA superkingdom:Eukaryota; 1.044039423 1.053767348 1.097112995 1.017511895 1.046761339 1.06919683 1.016186163 1.0618174 1.011709952 1.034269673 1.068201768 1.018556802 1.000139197 1.027962737 0.987649306 1.024292633 1.046541003 1.04098512 302475369 ben_bcla Streptomyces griseoflavus Tu4000 virulence NA NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseoflavus; 0.834469083 0.83809581 0.888050841 0.824014549 0.8836646 0.851620374 0.827153986 0.800618567 0.84043533 0.876966509 0.883063968 169793376 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.964281303 0.959195217 0.951347279 1.007795329 0.964937456 0.96453413 0.957757975 0.958505843 0.944344835 0.941174425 0.937445502 0.959378657 0.948889361 0.930452534 0.932015976 0.921219954 0.98895981 0.99872988 225020345 pula Corynebacterium matruchotii ATCC 33806 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium matruchotii; 1.025479656 1.016192556 1.024894569 1.06323109 1.010373058 1.025702498 1.032683269 1.051939943 1.046172324 1.024395927 0.974758751 1.05006377 0.993872624 0.99446565 0.963394913 0.999789764 1.03357659 1.016165469 15055577 dsrB Desulfotomaculum ruminis Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum; 1.092362647 1.106348284 1.085346838 1.068297086 1.045129195 1.100424811 1.054500152 1.082298835 1.070399244 1.067652415 1.05467047 1.088267939 1.003283517 1.017708684 1.003722909 1.032965342 1.066728576 1.08088815 297039241 gdh Giardia intestinalis Nitrogen Ammonification NA superkingdom:Eukaryota;family:Hexamitidae;genus:Giardia; 1.295629162 1.300455552 1.23873345 1.269423339 1.246510998 1.312648322 1.246853577 1.226328167 1.268275587 1.261972248 1.263730075 1.259416841 1.244257772 1.256912348 1.238700128 1.257106409 1.313646718 1.282902602 315047608 protease_cysteine_fungi Arthroderma gypseum CBS 118893 Carbon Cycling Carbon degradation protein superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Arthrodermataceae;genus:Arthroderma;species:Arthroderma gypseum; 1.108823731 1.004223396 1.055359626 1.083823895 1.060048189 1.061749656 1.072810874 1.068932644 1.090378683 1.046961529 1.018739505 1.048096261 0.99926585 0.997930825 0.984892396 1.008596822 1.056996144 1.050542672 56477216 badh Azoarcus sp. EbN1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 0.985487455 0.993960146 0.983108398 1.043997367 0.998055418 1.000800205 0.953739486 0.96139801 0.942456441 0.960098297 0.932305617 0.945878278 0.981223509 0.920550398 0.917498168 0.921868471 1.031464679 0.985666726 85687794 nifh Erythrobacter sp. NAP1 Nitrogen Nitrogen fixation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter; 0.983929253 0.963849121 0.986729346 0.961033423 0.945939648 0.941057878 0.912563241 0.930092401 0.960403094 0.954224662 0.939792328 0.915156293 0.939598433 0.956832781 0.892847125 0.947392712 0.973782208 0.947461379 256690165 Bacteriorhodopsin Halorhabdus utahensis DSM 12940 Secondary metabolism Pigments Rhodopsin superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halorhabdus;species:Halorhabdus utahensis; 0.812491619 0.800859956 0.830835199 0.798928212 260617465 GAPDH_Calvin Vibrio furnissii CIP 102972 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio furnissii; 1.051802265 1.133022954 1.091985344 1.042581193 1.071765597 1.058950072 1.082792413 1.067970175 1.07880646 1.021645335 1.043965456 1.077845829 1.056362808 0.97514735 1.040374082 0.931824467 1.044833981 1.004976982 325104462 ppx Pedobacter saltans DSM 12145 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Pedobacter;species:Pedobacter saltans; 0.883046087 0.845494617 0.864459001 0.83219148 0.90627306 0.896018484 0.858293186 0.848575862 0.921999769 0.925354366 0.863269854 0.867598289 0.887254958 0.864545745 0.808062514 0.831106087 0.84090443 0.956509883 333735728 amyA Treponema azotonutricium ZAS-9 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema azotonutricium; 0.780569864 0.849702398 0.824626557 0.846717975 0.846456097 0.814947384 0.889306457 0.81708018 0.850987082 0.88635805 0.814122547 0.873631652 319793665 amyA Variovorax paradoxus EPS Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 0.948395201 0.946297159 0.882168127 0.888780178 0.900003896 0.931963444 0.879679844 0.885574364 0.888212332 0.928518261 0.94212878 0.918939062 0.879659465 0.881942284 0.826064891 0.885216875 0.916427698 0.938943623 254521343 B_lactamase_A Stenotrophomonas sp. SKA14 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas; 0.841284902 0.903608986 0.868768355 0.858640706 0.849364574 0.856713073 0.82725853 0.78782774 0.816368302 0.861739493 0.85562189 0.881135773 170653130 pgk Methylobacterium radiotolerans JCM 2831 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium radiotolerans; 1.2163206 1.184248837 1.217969725 1.217137709 1.164202866 1.189448847 1.156807554 1.186140665 1.204702373 1.180136207 1.169323464 1.200849815 1.174252574 1.149678816 1.17025228 1.156377239 1.199024895 1.16262529 374413675 dsra uncultured prokaryote Sulfur sulfite reduction NA 0.790383029 0.805151031 0.915188099 0.815392608 1.032886858 0.866584229 0.872031156 0.792128897 0.830643267 0.88660687 0.829079928 0.863292508 0.853416165 339061927 PRI gamma proteobacterium IMCC2047 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 1.09740066 1.036067519 1.041270999 1.063145386 1.000992345 1.051064767 1.048363695 1.057256045 1.073095678 1.03267369 1.016124591 1.043627359 1.012543873 1.02576164 1.011974273 1.047948004 1.072642334 1.004809215 78167184 nifh Pelodictyon luteolum DSM 273 Nitrogen Nitrogen fixation NA superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Pelodictyon;species:Pelodictyon luteolum; 1.150637595 1.13524602 1.157405791 1.206282612 1.176079788 1.17323451 1.187189187 1.181865763 1.151110616 1.155678712 1.181191484 1.171067047 1.187942425 1.11523245 1.116966407 1.144511073 1.172870141 1.129787212 317508563 amyA Segniliparus rugosus ATCC BAA-974 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Segniliparaceae;genus:Segniliparus;species:Segniliparus rugosus; 0.862370524 0.836072164 0.895005073 0.893901196 0.861072138 0.858623906 0.854216376 0.87381744 0.922452921 0.823002711 0.810315994 0.827188337 0.901144983 0.838453965 0.887105402 0.858187429 182415513 xylanase Opitutus terrae PB90-1 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 0.854142341 0.816546031 0.849019959 0.792802096 0.869138504 0.806012121 0.86172031 0.832681317 91782273 cyma Burkholderia xenovorans LB400 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 0.85176946 0.863533588 0.829342438 0.829910499 0.86748753 0.841968526 0.810666841 0.865498692 0.971875119 0.862089858 389878288 poba Tistrella mobilis KA081020-065 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Tistrella;species:Tistrella mobilis; 0.774545534 0.814879642 0.877117391 0.784488148 0.828378214 319413980 phenol_oxidase uncultured bacterium Carbon Cycling Carbon degradation Lignin superkingdom:Bacteria; 0.890894836 0.922879459 0.828493233 0.920664046 0.861440642 0.885591646 0.857169466 0.867507051 0.816511873 0.909330772 0.837557877 0.876920755 0.881058832 0.844736002 0.826923338 0.888413457 0.895955361 0.882293849 229817842 amyA Bifidobacterium angulatum DSM 20098 = JCM 7096 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium angulatum; 0.909934191 0.914451181 0.922805189 0.927577299 0.972953223 0.955963117 0.963307393 0.902070302 0.896772947 0.981105251 0.927956327 0.9363607 0.940885774 0.923815183 0.950065372 0.91259193 0.960840005 0.994596473 325267725 linc Kingella denitrificans ATCC 33394 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Kingella;species:Kingella denitrificans; 0.936874392 0.976924559 0.890411475 0.949116803 0.928455337 0.940105557 0.85554404 0.920585737 0.946410489 0.928301885 1.006960441 0.934773799 0.860037783 0.915885672 0.833979213 0.890431652 0.958369989 0.957033366 56388554 soxY Rhodovulum sulfidophilum Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodovulum; 1.128358906 1.092188538 1.130266103 1.126960996 1.112234475 1.129436869 1.078453842 1.103420092 1.126409141 1.08817801 1.121094961 1.148147699 1.082865707 1.073697264 1.107097148 1.131882793 1.14543161 1.113643957 159045240 dehh109 Dinoroseobacter shibae DFL 12 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 0.976424922 0.955526509 0.965747612 0.978572264 0.92282763 0.934477186 0.859760578 0.959262486 0.953554073 0.96405816 0.94054632 0.914340972 0.950598056 0.924668889 0.91538337 0.939221689 0.95281814 0.973365705 365900157 cbaa Bradyrhizobium sp. STM 3843 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 1.28823009 1.245013804 1.221307143 1.238886689 1.190329096 1.252186767 1.225868358 1.238161398 1.212233302 1.210229575 1.210695421 1.214917485 1.216141949 1.163126351 1.175991137 1.183024044 1.260449612 1.222470915 255300957 nrfa Campylobacter showae RM3277 Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter showae; 1.117297465 1.092517702 1.091020398 1.138092503 1.078232022 1.089826369 1.081877243 1.10183195 1.117403894 1.085355571 1.086660708 1.11222645 1.076714931 1.059622161 1.059639939 1.064373558 1.096083138 1.092040214 167566792 b_lactamase Burkholderia oklahomensis EO147 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia oklahomensis; 1.016860752 1.047495688 0.977534134 1.010603423 1.026851564 1.051874761 1.000453173 0.955944341 0.982415286 1.004546617 0.98835594 0.981240492 0.983480932 0.969826345 0.916817521 0.976353387 1.05584359 1.063085374 350563904 ccmL Thioalkalimicrobium aerophilum AL3 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Thioalkalimicrobium;species:Thioalkalimicrobium aerophilum; 0.871415276 0.851134277 0.825111997 0.899924576 0.88228967 0.855684901 0.842631723 0.84992556 0.85957853 0.841632135 0.841540625 0.846188202 0.802841348 0.802672324 0.794791848 0.864652681 0.880291568 116199623 glucoamylase Chaetomium globosum CBS 148.51 Carbon Cycling Carbon degradation Starch superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 0.958765372 0.983459932 0.986457368 1.03901975 1.005246948 0.976404349 0.983724853 1.025237973 1.004881054 0.967396656 0.949916348 1.014425494 0.978952457 0.92269658 1.004465612 0.968437881 0.983140603 0.946269685 334881167 arsc Lactobacillus pentosus MP-10 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus pentosus; 1.126454606 1.118182942 1.160867135 1.112979621 1.100132654 1.126009267 1.091064592 1.071091325 1.0918437 1.064630711 1.067552022 1.093391051 1.093720889 1.0729487 1.094957312 1.091882286 1.151081159 1.110044615 110672112 xylg Ralstonia sp. PHS1 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 1.052261755 1.060150604 1.014821283 1.004389466 1.009077473 1.058208121 1.024657779 1.003620007 0.978027549 1.021606125 0.991365811 0.978619736 1.029776956 1.00599296 0.980086772 1.025777179 1.031879071 1.03807052 109290305 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.821506821 0.90096669 0.814910645 0.786764196 0.873977024 0.893673177 0.808689236 0.769779214 0.883682679 0.820272314 0.837149434 0.826755894 0.879971354 0.843688681 0.796537906 0.900455334 307729860 poba Burkholderia sp. CCGE1003 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 0.810215629 0.849762922 0.822298106 0.81448087 0.820271922 0.813577156 0.869738887 256378193 mannanase Actinosynnema mirum DSM 43827 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Actinosynnema;species:Actinosynnema mirum; 0.996240278 1.008422264 0.939688299 1.016085767 0.990033396 0.987344098 0.960709423 0.958102549 0.965861176 1.003485046 0.966084519 1.011380705 0.980018825 0.985581419 0.958521486 1.002731158 1.012739874 0.961453023 334090160 fthfs Desulfotomaculum ruminis DSM 2154 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum ruminis; 0.966969249 1.000349961 0.978796006 1.003078934 0.964876063 0.972928531 0.927078209 0.956347503 0.976524374 0.9863695 0.951388457 0.987161318 0.923243007 0.936142606 0.862763246 0.904634581 0.984961469 0.963162808 297580613 tktA Vibrio cholerae RC385 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio cholerae; 0.98117371 0.95621535 0.971462657 1.045560967 0.935058543 0.996124277 1.054394046 1.022033438 0.996262231 0.984852025 0.979071613 1.014237807 0.920469264 0.928647604 0.88873518 0.930788936 0.978193751 0.974579373 378401756 tktA Rhodospirillum photometricum DSM 122 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum photometricum; 1.24313131 1.215738879 1.186321309 1.236561465 1.146644784 1.20209642 1.17125015 1.196683551 1.219670128 1.200085083 1.182951422 1.214249572 1.165696595 1.132489261 1.150542566 1.160277744 1.245734318 1.199228442 357410990 endoglucanase Streptomyces flavogriseus ATCC 33331 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces flavogriseus; 1.08923812 1.065209203 1.04495509 1.080586192 1.037808101 1.075591888 1.03807419 1.033774336 1.057415637 1.024798969 1.023921388 1.04815735 1.04454491 1.041303779 1.024556224 1.022090116 1.101208575 1.053080218 302885782 pec_Cdeg Nectria haematococca mpVI 77-13-4 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Fusarium;species:Nectria haematococca; 0.945249259 0.944391306 0.950037351 0.886753324 0.859020994 0.908140531 0.88209515 0.887066187 0.88298102 0.977405409 0.96361481 0.914271384 0.846536676 0.889364726 0.835859434 0.832224908 0.936679475 0.969693145 146296573 ara Caldicellulosiruptor saccharolyticus DSM 8903 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacterales Family III. Incertae Sedis;genus:Caldicellulosiruptor;species:Caldicellulosiruptor saccharolyticus; 0.862505273 0.788719932 0.817766974 0.793513248 13471048 b_lactamase Mesorhizobium loti MAFF303099 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 0.938767587 0.923795962 0.892814282 0.831478729 0.820495006 0.864572812 0.845577121 0.835096485 0.861828434 0.871938267 0.91928395 154151622 nifh Candidatus Methanoregula boonei 6A8 Nitrogen Nitrogen fixation NA superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;genus:Methanoregula;species:Methanoregula boonei; 0.90501064 0.919358066 0.94179306 0.944215039 0.934791498 0.950312405 0.935972284 0.93838779 0.95834046 0.968208927 0.909152172 0.914717672 0.84296527 0.94429197 0.888364785 0.931462754 0.93220984 0.904880705 381381493 amyA Caldilinea aerophila DSM 14535 = NBRC 104270 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Chloroflexi;class:Caldilineae;order:Caldilineales;family:Caldilineaceae;genus:Caldilinea;species:Caldilinea aerophila; 1.230080678 1.24920207 1.208949011 1.210963282 1.199242941 1.184674677 1.165598666 1.219041929 1.178175477 1.181347015 1.139454636 1.176348742 1.148170422 1.185060023 1.084805184 1.159535782 1.211808943 1.24053513 300534032 ppx Corynebacterium genitalium ATCC 33030 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium genitalium; 0.976855166 0.987107363 0.97634277 0.991822667 0.939064874 0.991969113 0.951359247 0.980358513 0.968966522 0.972691795 0.936293614 0.955871056 0.920604884 0.951846139 0.934334867 0.974212668 0.98415116 0.995183385 329940633 linb Streptomyces griseoaurantiacus M045 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseoaurantiacus; 1.114899316 1.094645836 1.028420791 1.076041941 1.014746644 1.063871913 1.009264386 1.018745965 1.083333303 1.053477833 1.038037689 1.071074993 1.020057912 1.026682211 1.019647966 1.035170254 1.097710492 1.045546637 254388305 endochitinase Streptomyces clavuligerus ATCC 27064 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces clavuligerus; 0.850257337 0.85841673 0.84664032 0.865175814 0.821847941 0.851980853 0.848767155 0.824286121 0.878386347 0.833041776 0.868036333 0.876916245 0.839051784 0.836815813 114706526 xyla Fulvimarina pelagi HTCC2506 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Fulvimarina;species:Fulvimarina pelagi; 1.114745379 1.122897219 1.096427294 1.086840767 1.112319366 1.138668921 1.101651177 1.048972391 1.107797781 1.100449358 1.095396434 1.080787021 1.054815262 1.07677409 1.074447458 1.060496169 1.136063667 1.109681494 99030561 ppk uncultured bacterium Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria; 0.953109693 0.817951224 0.925125509 0.98405326 0.928605183 0.951922797 0.97594906 0.973381368 0.952443987 0.901424581 0.968591726 0.902713327 0.913291628 0.887658023 0.84265573 0.876485395 0.96917523 0.852822185 377565573 bphd Gordonia sputi NBRC 100414 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia sputi; 1.030899322 1.075612904 0.979723213 0.995975263 0.999117667 1.020984939 0.970920234 1.005078428 1.010119026 1.021577452 1.020120686 1.042182607 0.951300271 0.9611668 0.918870314 0.936924584 1.008115105 1.028405205 358637688 amyA Azoarcus sp. KH32C Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 1.067038654 1.06713849 1.016321403 1.058854378 1.039712748 1.06156957 1.002303014 1.113524911 1.019595455 1.036338753 1.02145552 1.035647635 1.014101811 1.021830006 0.986762211 1.03898534 1.067718685 1.070521736 27351656 nitrilase Bradyrhizobium japonicum USDA 110 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 0.8243599 0.835246346 0.818238634 0.848773176 0.816152975 0.810606282 0.798737682 0.819964722 0.813373372 0.885013162 0.846281974 300102959 exoglucanase Schizophyllum commune H4-8 Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 1.08381326 1.092395524 1.091691077 1.10173161 1.070912128 1.15834119 1.044374338 1.037455167 1.065125207 1.072540528 1.055146553 1.077005523 1.039979463 1.076531941 1.084632114 1.056207484 1.122420791 1.085742089 214038455 bphd marine gamma proteobacterium HTCC2148 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 0.846819437 0.85187309 161164565 nrfa Sorangium cellulosum 'So ce 56' Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 1.181305066 1.156043353 1.145430982 1.174917289 1.171654687 1.139881857 1.113786505 1.13403612 1.167212777 1.134477886 1.132291939 1.15352 1.148119966 1.124043145 1.123008252 1.121404234 1.18431598 1.174887185 227338554 acetylglucosaminidase Rhizobium sp. NGR234 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium fredii; 1.074644183 1.040386677 1.012947404 1.059350743 1.038279745 1.033771551 1.05628853 1.039731468 1.061941009 1.02335589 1.014030163 1.008562278 1.010224503 0.996084672 0.993825632 1.020781627 1.060913556 1.034182722 133913533 bend Saccharopolyspora erythraea NRRL 2338 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 1.103356001 1.110253352 1.07914053 1.077797519 1.041479417 1.091741199 1.056806696 1.043792859 1.057448324 1.085142503 1.064901383 1.083102687 1.057399328 1.075263026 1.045083063 1.072205545 1.099900676 1.084790557 78102057 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 1.263179541 1.154263682 1.191784965 1.211712134 1.218540468 1.201448882 1.200171694 1.237139671 1.195734066 1.170094839 1.225307817 1.204394095 1.211914956 1.126957165 1.16177388 1.160863694 1.201533973 1.148692734 255922080 amyA Actinosynnema mirum DSM 43827 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinosynnemataceae;genus:Actinosynnema;species:Actinosynnema mirum; 1.325928752 1.3204132 1.287493734 1.32334294 1.297780741 1.321757927 1.264406186 1.289392132 1.271850101 1.280758789 1.262108861 1.312123565 1.273892513 1.226687598 1.194420855 1.247601256 1.301341476 1.283844103 29652574 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.85940765 0.910264033 0.861503737 0.874972899 0.808821501 0.918769764 0.855247938 0.853818127 0.874810998 0.865047401 0.89451529 0.843130856 0.836322975 0.847006162 0.840697986 0.864000105 0.918419128 88864948 xlnd Jannaschia sp. CCS1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Jannaschia; 0.995732041 0.987686138 0.902241014 0.961196259 0.943222772 0.971045513 0.911292079 0.885815165 0.95166588 0.951549335 0.952184765 0.934074949 0.915178156 0.930349297 0.88230796 0.950034034 0.97137326 1.008788889 144905723 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.831154695 0.83165919 0.816507575 0.800826236 0.805726599 0.864329238 120593857 pgk Polaromonas naphthalenivorans CJ2 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 0.892692108 0.853873255 0.860156348 0.830462093 0.86537968 0.810674672 0.860573095 0.813015465 0.815156613 0.819997256 0.825576504 0.851480465 0.906120485 86358387 nhh Rhizobium etli CFN 42 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 0.922214159 0.91055366 0.980383921 0.875216491 0.862465205 0.924290921 0.876209897 0.882338663 0.894255583 0.931049543 1.011343679 0.903454731 0.896634001 1.053851618 0.923300976 0.88407548 0.93596479 0.916709459 342316560 aoxb uncultured bacterium Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 0.959713431 0.967881424 0.925520082 0.907358192 0.947891969 0.947620867 0.865562207 0.884369933 0.913796113 0.945825677 0.924654945 0.943088195 0.889345881 0.909717385 0.910048836 0.906605735 0.976596332 1.024675402 345124455 tktA endosymbiont of Tevnia jerichonana (vent Tica) Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;species:endosymbiont of Tevnia jerichonana; 0.840615758 0.924665364 0.833397563 0.839154834 0.86703906 0.846041052 0.882241109 0.845815251 0.843292132 0.868236391 0.80595946 0.825130533 0.837223185 0.827663707 0.852517584 392670519 amyA Bacteroides salyersiae CL02T12C01 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides salyersiae; 0.874313597 0.859108255 0.843257616 0.922556154 0.841816625 0.847458303 0.842569086 0.866992592 0.849923361 1.054787491 0.859519538 0.814356718 0.882449779 0.903582778 340030489 PRI Paracoccus sp. TRP Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus; 1.108177334 1.069587695 1.103681371 1.131238956 1.118154469 1.127417252 1.144617899 1.147337828 1.113274251 1.097164449 1.095843692 1.120984149 1.085419459 1.055489892 1.07751705 1.049111676 1.100302835 1.106190995 33577871 cbaa Bordetella bronchiseptica RB50 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella bronchiseptica; 1.000051709 1.003753854 0.981126567 0.985752221 0.888962246 0.954810592 0.98093117 0.969819254 0.936086355 0.929698605 0.943338201 0.958748926 0.943846153 0.980376015 0.994264941 398870681 xylj Pseudomonas sp. GM74 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 1.179791864 1.155563973 1.165087446 1.179542118 1.161123606 1.162630437 1.162607211 1.154122943 1.159395025 1.163397871 1.15964472 1.167379757 1.1342321 1.10501104 1.069726905 1.143305303 1.177834967 1.135620488 226182894 urec Rhodococcus erythropolis PR4 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 0.897599819 0.903287678 0.83418334 0.859772345 0.827733244 0.891683638 0.825854013 0.830682298 0.92046019 0.862647752 0.852530094 0.834782162 0.880288206 1.017290882 0.884506547 0.904765335 184191686 pgk Burkholderia phymatum STM815 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 0.91166917 0.832080178 0.888575701 0.858295425 0.856164241 0.879810273 0.843219321 0.864080749 0.905713311 0.878925721 0.895376092 0.878764596 0.805567969 0.850465218 0.834141959 0.92694945 294884099 aoxb bacterium enrichment culture clone aoxheteroA10_4W Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 0.896050169 0.878977719 0.900777722 0.865684932 0.913926646 0.89414482 0.912528583 0.882053387 0.870958234 0.908382037 0.91202961 0.905191906 0.86449067 0.859357179 0.841644312 0.857466143 0.911905077 0.897565533 145595484 endochitinase Salinispora tropica CNB-440 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora tropica; 1.111409284 1.140966261 1.08699472 1.094175299 1.088276622 1.11342076 1.086284067 1.093851041 1.102025542 1.084535996 1.124054307 1.086648078 1.086272052 1.083074097 1.102793461 1.092096474 1.124372121 1.10182518 32307981 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.189585965 1.21002199 1.223724393 1.178459814 1.175444017 1.204905432 1.184678235 1.16023443 1.218312241 1.171153884 1.273336478 1.187252882 1.153211402 1.124449899 1.226515838 1.219342542 1.218188108 1.213775049 352962562 rubisco uncultured bacterium Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria; 0.919215341 0.961531491 0.917019393 0.9769538 0.922249599 0.971227704 0.902535034 0.923459183 0.886553221 0.935807409 0.879040669 0.932320984 0.911999885 0.929260367 1.003350668 0.928401318 0.967965027 0.937878548 315119772 ppk Parascardovia denticolens DSM 10105 = JCM 12538 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Parascardovia;species:Parascardovia denticolens; 0.887200952 0.90757471 0.844178425 0.943064533 0.874272476 0.861939132 0.931130144 0.902723088 0.888357736 0.876840472 0.8516433 0.797708369 0.880696146 0.838786193 0.912714966 0.909187849 378951267 limeh Pseudomonas fluorescens F113 Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 1.056929322 1.149663943 1.090064955 1.098902524 1.071150659 1.143309415 1.05359737 1.086669354 1.050354377 1.124445645 1.0859631 1.075610431 1.080926787 1.080851508 1.083136523 1.099749337 1.064519933 1.101724191 359307008 amyA Arthrobacter globiformis NBRC 12137 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter globiformis; 1.268866551 1.209394152 1.227215011 1.230267674 1.190938604 1.244989087 1.200618916 1.238145417 1.252113206 1.194104358 1.195586454 1.218680244 1.192207628 1.192297557 1.204638467 1.194389225 1.241889642 1.199009888 27375218 ben_bcla Bradyrhizobium japonicum USDA 110 virulence NA NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium diazoefficiens; 1.219271371 1.234364363 1.196192464 1.205982288 1.187015683 1.224343847 1.172114537 1.187247637 1.185663189 1.202670643 1.202966475 1.181892549 1.169852817 1.190583733 1.164765686 1.169666646 1.201469414 1.233118435 7416772 ppx Rubrivivax gelatinosus Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Rubrivivax; 1.138597543 1.138308588 1.087991935 1.10347468 1.082867116 1.11677613 1.096378128 1.099012621 1.097364206 1.09418967 1.066212058 1.100155363 1.062544782 1.044935027 1.04454635 1.106624384 1.13263691 1.102757896 283807805 hdno Kribbella flavida DSM 17836 Organic Remediation Aromatics Heterocyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Kribbella;species:Kribbella flavida; 1.076604205 0.985149311 1.021507541 1.000169496 0.901521788 0.976377797 0.936282972 0.982752609 1.018625324 0.966416395 0.9549749 0.947802034 0.977094393 0.946275604 0.968718696 0.971877781 1.024302159 0.997950982 257219392 dsra uncultured bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.848650387 0.789009335 0.82049074 56798493 catechol_b uncultured bacterium Organic Remediation Aromatics Other aromatics superkingdom:Bacteria; 1.430248642 1.440020957 1.407382997 1.410134795 1.38606553 1.43343611 1.367533582 1.383596821 1.378217877 1.380693744 1.381429585 1.40605689 1.371466595 1.363120196 1.367547316 1.397030296 1.418337164 1.403081394 219543243 amyA Chloroflexus aggregans DSM 9485 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aggregans; 1.001874349 0.929743135 0.898191612 0.924227154 0.813897852 0.924661594 0.881151697 0.924157008 0.931563496 0.915651835 0.856938696 0.870304821 0.906192658 0.836087938 0.844442407 0.942600321 0.964934987 381384727 arsc Caldilinea aerophila DSM 14535 = NBRC 104270 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Chloroflexi;class:Caldilineae;order:Caldilineales;family:Caldilineaceae;genus:Caldilinea;species:Caldilinea aerophila; 1.02174112 0.998652544 0.965024265 1.024773909 0.993668364 0.950067357 0.922548831 1.031753563 0.974323584 0.967251355 0.990329925 1.016935439 0.966360979 0.935152148 0.920939091 0.962582335 0.984631052 0.950283226 299524791 TIM Hyphomicrobium denitrificans ATCC 51888 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium;species:Hyphomicrobium denitrificans; 1.174742111 1.11041208 1.143108032 1.141590623 1.068696302 1.082061536 1.043457551 1.081153436 1.144329404 1.098331672 1.109955353 1.114145614 1.101848347 1.091292494 1.04153701 1.057882655 1.157180081 1.093304387 182413162 rgl Opitutus terrae PB90-1 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 1.313941709 1.274822294 1.29062049 1.3105925 1.294652862 1.319989645 1.28403431 1.28361558 1.288935204 1.253665345 1.279487358 1.297199157 1.265349882 1.240385641 1.265198468 1.282650722 1.305975569 1.264631163 74484309 cmtab Pseudomonas putida Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 1.394111063 1.365634652 1.341639753 1.362075636 1.317540884 1.394537441 1.319319116 1.324048476 1.335233919 1.337260954 1.334540545 1.326732355 1.321093693 1.324454016 1.276985393 1.338798778 1.377178022 1.34538105 300654630 FBPase Rhizobium sp. Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 0.823277441 0.947969416 0.83809689 0.871915695 0.880951971 0.802731463 0.859609222 0.808248545 0.862354959 0.875108873 0.871968489 0.765002632 0.775986758 0.867955777 0.853059924 254511496 phn Rhodobacteraceae bacterium KLH11 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 0.833672824 0.897624714 0.862486553 0.888936787 0.819699705 0.840345927 0.891965094 0.898834778 0.85890366 0.870491442 0.829974422 0.881704361 0.846955984 0.869675364 0.893189769 149921338 vana Plesiocystis pacifica SIR-1 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Nannocystaceae;genus:Plesiocystis;species:Plesiocystis pacifica; 0.874860306 0.873745679 0.838594024 0.867324824 0.892978213 0.881246402 0.815833019 0.825911453 0.847800581 0.818457934 0.835856663 0.807115575 0.818330329 0.84882946 0.879161932 365892002 TIM Bradyrhizobium sp. STM 3809 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.842933964 0.947886805 0.868394527 0.853874103 0.889539317 0.921522488 0.862833795 0.859751574 0.835330144 0.895617547 0.833722265 0.953789115 0.877772912 0.864291123 0.846974925 0.901794232 0.86637465 0.899867325 302430902 amyA Streptomyces sp. SPB78 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 1.203957594 1.2038437 1.175425035 1.17984628 1.17543125 1.193111528 1.151139219 1.148531627 1.155501297 1.161047512 1.172131474 1.175375205 1.172490318 1.137413186 1.1641817 1.145144916 1.223275077 1.162183098 37791351 rubisco uncultured proteobacterium Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria; 1.339045801 1.30265056 1.323298174 1.347417311 1.300085925 1.320314528 1.297906157 1.332332766 1.323948379 1.30317143 1.318364834 1.346766967 1.265720527 1.251465406 1.267435045 1.297571229 1.330666814 1.284735955 197294932 mer Burkholderia cenocepacia J2315 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cenocepacia; 1.149564846 1.12626239 1.123636671 1.094322651 1.111397425 1.136946961 1.127990665 1.089426281 1.117621263 1.126411214 1.10693292 1.117086836 1.084779468 1.068101568 1.052244118 1.08843372 1.11202165 1.138578961 302681527 amyA Schizophyllum commune H4-8 Carbon Cycling Carbon degradation Starch superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 1.098693292 1.122137856 1.034307857 1.083534366 1.091045206 1.150065422 1.067358205 1.07142326 1.055630277 1.068635145 1.090983494 1.070705269 1.056067163 1.098189099 1.055361338 1.092646007 1.092290971 1.094042 383513906 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.818515329 0.79963279 94310131 atzb Ralstonia metallidurans CH34 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 1.003382737 0.955678917 0.981285912 0.946866105 1.008891315 1.009118184 0.999390166 1.023015473 0.966539672 0.976031801 0.94146097 0.973824379 0.885767196 0.923572157 0.921016199 0.94801568 1.006142132 1.002508613 296022695 xylanase Cellulomonas flavigena DSM 20109 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas;species:Cellulomonas flavigena; 1.270914837 1.261816503 1.259374483 1.254568756 1.20557876 1.283764623 1.19506814 1.22801363 1.234226281 1.232756825 1.235353993 1.248928677 1.184398095 1.219452347 1.159123613 1.241958044 1.284036129 1.240940547 162568541 aoxb uncultured bacterium Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 0.795905391 0.850059727 0.833342767 0.837276639 0.821960239 0.765200419 0.84427427 214044874 soxY Roseobacter sp. GAI101 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 1.014865994 1.019087258 1.008378663 1.072080263 0.961123093 1.005097306 1.029612048 1.032800352 1.03504285 1.015207439 1.003317458 1.047563544 0.997814945 0.987541985 0.979867174 0.999535108 1.017885319 1.010419139 350275027 AACT_DiC4HB Thermoproteus tenax Kra 1 Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Thermoproteus;species:Thermoproteus tenax; 0.915234003 0.932866281 0.975511409 0.936953628 0.974158959 1.002390435 0.965835658 0.914539201 0.916898208 0.955360662 0.914694704 0.974255659 0.943145912 0.974327363 0.967487158 0.903194364 0.934203446 0.955906831 329747026 hyaluronidase Selenomonas sputigena ATCC 35185 Carbon Cycling Carbon degradation hyaluronic acid superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas sputigena; 0.886194506 0.832349494 0.867701511 0.937725837 0.952508288 0.84737463 0.965133762 0.911826644 0.870466055 0.793827451 0.830094824 0.878102137 0.921441761 0.792775241 0.832730937 0.900993802 0.917113047 66351659 oxdb Agrobacterium tumefaciens Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium; 1.193261174 1.125574653 1.116500614 1.148581306 1.094109712 1.138783927 1.086947676 1.136270869 1.12506028 1.099565064 1.105547401 1.125262366 1.10843474 1.067080449 1.10878737 1.113392282 1.179881631 1.09783955 385738833 mdlc Bradyrhizobium sp. WSM1253 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.924507657 0.936872782 0.953854629 1.003420684 0.910582308 0.92937975 0.929531238 0.930181079 0.997928904 0.911037444 1.024925024 0.933087049 0.948037136 0.924368196 0.927479709 0.924899554 1.051834257 0.979065652 50542660 rubisco uncultured bacterium Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria; 0.835522145 0.8847207 0.832772787 0.815299211 0.829259969 0.876438115 0.826805431 0.835560652 0.847918577 0.812531512 0.834365664 0.847055115 0.816002034 0.862985033 345099035 rubisco uncultured bacterium Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria; 0.797095914 0.826718363 343763023 amyA Gordonia alkanivorans NBRC 16433 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia alkanivorans; 0.951172956 0.955076678 0.980302154 0.942378412 0.937598042 0.945419748 0.919540794 0.924258557 0.892155813 0.893106064 0.909101157 0.90026547 0.848857328 0.851554658 0.857246639 0.86934485 0.953516009 0.994050925 351593263 ppx Pelagibacterium halotolerans B2 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Pelagibacterium;species:Pelagibacterium halotolerans; 0.79550057 0.797909511 0.84118004 0.820424654 0.762902984 0.810648621 0.836783826 238753108 ppk Yersinia rohdei ATCC 43380 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia rohdei; 0.914400025 0.849705074 0.846930057 0.844981479 0.822731939 0.84239504 0.834807315 0.819683092 0.851370756 0.866497745 0.81287069 1.029683425 0.845824906 0.826090596 381146561 alkb Mycobacterium neoaurum Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 1.111006082 1.146421239 1.090594723 1.106300058 1.131219412 1.151375426 1.127370837 1.100383954 1.103359598 1.138623541 1.118986655 1.103785383 1.088785048 1.1323561 1.078795092 1.082568203 1.132213567 1.18396998 302385904 ccmL Clostridium saccharolyticum WM1 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium saccharolyticum; 1.138833898 1.155480356 1.124286924 1.156310446 1.095968853 1.155508265 1.106597022 1.12484633 1.114713212 1.122857332 1.104109456 1.111436026 1.107315263 1.140112035 1.084826346 1.088265339 1.147873623 1.127140777 261364740 cysJ Neisseria mucosa ATCC 25996 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria mucosa; 0.986055794 0.903682856 0.994050236 0.939812494 0.927474406 0.942585622 0.914127967 0.944952901 0.935574207 0.931363891 0.920382095 0.907674138 0.909427362 0.857923375 0.878568362 0.876709687 0.909405937 0.920504956 358240961 amyA Gordonia amarae NBRC 15530 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia amarae; 0.796460305 0.856632795 0.777543999 0.835872569 0.812344277 0.819187227 0.808541132 0.84067165 0.824211822 23491548 one_ring_12diox Burkholderia sp. TH2 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 0.947374767 0.948950781 0.919690332 0.906887701 0.831516639 0.859433769 0.844979969 0.921855218 0.925819181 0.910792915 0.890796973 0.928919073 0.859893232 0.860788283 0.814147942 0.920203805 0.949895493 0.938896777 254266625 soxY Methylobacterium extorquens DM4 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium extorquens; 0.838145448 0.811384621 0.85066207 0.834813346 0.871944464 0.817078115 0.88275753 0.873749632 0.852362747 0.834090143 0.85505711 0.827498138 0.824007858 0.78397602 0.848097548 0.84992648 357394292 endoglucanase Kitasatospora setae KM-6054 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Kitasatospora;species:Kitasatospora setae; 0.888625381 0.851361333 0.862928621 0.895286343 0.849859187 0.888255538 0.830204341 0.879624364 0.856516152 0.816476724 0.824906254 0.869152815 0.91831147 259660915 TIM Gloeobacter violaceus Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Cyanobacteria;class:Gloeobacteria;order:Gloeobacterales;genus:Gloeobacter; 1.035927895 1.12034433 1.037478456 1.046483608 1.059388126 1.106152354 1.051745976 1.039201076 1.068328431 1.081812512 1.042281976 1.071118746 1.042147182 1.050888546 1.011492582 1.059771719 1.050140883 1.082738666 333966180 terc Thermus thermophilus SG0.5JP17-16 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus;species:Thermus thermophilus; 0.865640544 0.846710768 0.852859169 0.925473077 0.809577897 0.895058566 0.845442636 0.861893913 0.904382606 0.836976801 0.832040864 0.858312335 0.839662056 0.835481425 0.828895617 0.836970411 0.918846258 0.862489415 112463999 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.862546398 0.867630119 0.868528629 0.839756675 0.874658354 0.881828437 0.86128092 0.859829579 0.834088305 0.883754599 0.861176949 0.849230359 0.952707376 0.791220282 0.830090546 0.866907741 0.858314377 198265053 mer Octadecabacter antarcticus 238 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 0.820932442 0.794806024 0.793829623 0.79519635 0.813556362 0.788508843 0.83233571 0.816226089 0.810930779 0.818730745 0.837349424 0.878081159 61808040 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.906249245 0.947127798 0.87959743 0.909936719 0.912140173 0.907129624 0.842882955 0.858295373 0.881133225 0.81914175 0.836624094 0.837220917 0.846800717 0.813860293 0.821547951 0.920863183 0.922448206 387847234 b_lactamase Fibrisoma limi BUZ 3 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Fibrisoma;species:Fibrisoma limi; 0.910043481 0.867536838 0.850299501 0.911791744 0.833945614 0.804359998 0.856455556 0.903098424 0.978021577 0.809604508 0.813751524 0.84576283 0.946390749 0.986019412 0.873388245 296129589 amyA Cellulomonas flavigena DSM 20109 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas;species:Cellulomonas flavigena; 0.955168413 0.946646277 0.890526935 0.958196645 0.926102658 0.925402531 0.903619797 0.931686349 0.966905858 0.967517123 0.888865183 0.923074744 0.871918945 0.974317134 0.892776668 0.950207192 0.984483082 306517664 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.934293634 0.898179971 0.964651483 0.936710379 0.983801248 0.934742128 0.959820756 0.903098314 0.918545064 0.952510376 0.982591429 0.925011221 0.971039342 0.917263058 0.915143046 0.939190093 0.923934201 0.921137081 260778371 urec Vibrio coralliilyticus ATCC BAA-450 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio coralliilyticus; 0.802772467 0.866412805 0.803424007 0.840118835 0.783526442 0.851092729 0.823982562 0.834116731 0.84435524 0.843242353 0.831415489 0.886099412 211959444 arsm Pseudovibrio sp. JE062 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 0.861213808 0.806525581 0.797155105 0.808392219 259377418 dsrB Desulfoglaeba alkanexedens Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophobacteraceae;genus:Desulfoglaeba; 1.243264221 1.2150518 1.241601649 1.212721957 1.201678675 1.210424518 1.193225849 1.234741156 1.208674422 1.209367034 1.196925593 1.23097178 1.203983539 1.156194079 1.168287811 1.173219333 1.207296326 1.214474317 37791155 phenol_oxidase Volvariella volvacea Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Pluteaceae;genus:Volvariella; 0.789096145 0.846444633 0.807293982 0.802142112 0.82486556 0.822270705 0.839216678 0.7853495 0.802055854 288918947 xyla Frankia sp. EUN1f Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 0.880469415 0.803952325 0.803249733 0.863709283 0.802536887 0.814623036 88919941 rubisco Acidiphilium cryptum JF-5 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acidiphilium;species:Acidiphilium cryptum; 1.204429711 1.175562949 1.205979629 1.186017139 1.209712839 1.219813933 1.226948741 1.224163157 1.191302894 1.178605798 1.192799596 1.180480064 1.19020598 1.130410929 1.128005964 1.14493549 1.200640882 1.160208287 40362785 nosz uncultured soil bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.825869221 0.823845696 0.803119028 0.849771575 0.851834693 0.809056712 0.816865666 0.784443477 0.828017992 226834715 cellobiase Actinomyces urogenitalis DSM 15434 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces urogenitalis; 1.104607969 1.050820813 1.064829341 1.104667943 1.044051505 1.073715108 1.048975105 1.082512892 1.040228043 1.004032677 1.003039383 1.033932656 1.043275447 0.974552703 1.062636785 1.044298899 1.115639318 1.064428191 365856190 rubisco Acetobacteraceae bacterium AT-5844 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae; 1.166706435 1.124545969 1.10743526 1.141582154 1.105479753 1.146228375 1.103824335 1.127197744 1.105814042 1.123056379 1.100008618 1.12994872 1.105621052 1.118643381 1.136796229 1.13919715 1.154461658 1.104102103 301089413 pectin_lyase_Oomycetes Phytophthora infestans T30-4 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;order:Peronosporales;genus:Phytophthora;species:Phytophthora infestans; 0.906667832 0.83702255 0.867418402 0.88774972 0.823240681 0.84770118 0.834575243 0.875318823 0.876471858 0.837737555 0.819603344 0.833693621 0.801589721 0.827784725 0.828946085 0.876953458 0.868440911 383778989 amyA Actinoplanes missouriensis 431 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes;species:Actinoplanes missouriensis; 1.103355803 1.117944714 1.068094971 1.092846357 1.088126653 1.088454422 1.033249993 1.042750963 1.055661856 1.074251319 1.072812983 1.068176933 1.069900743 1.046493771 1.032742133 1.071200406 1.140474239 1.090307452 379009215 Sir Sulfobacillus acidophilus DSM 10332 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XVII. Incertae Sedis;genus:Sulfobacillus;species:Sulfobacillus acidophilus; 1.024343977 0.913123044 0.954810955 0.957703453 0.891647687 0.964883756 0.913497666 0.956209162 0.956223811 0.954264408 0.947478274 0.961161083 0.965247444 0.933078244 0.921925194 0.928399096 0.974173077 0.944027864 85372897 mer Erythrobacter litoralis HTCC2594 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter;species:Erythrobacter litoralis; 0.781522947 0.87198013 0.89950973 0.827962465 338536551 amyA Myxococcus fulvus HW-1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus fulvus; 0.894816936 0.936447435 0.961433449 0.926345763 0.920552929 0.968334691 0.892563675 0.928149044 0.914198209 0.938472257 0.906691766 0.882709055 0.965834584 0.878127847 0.98511785 0.926830481 0.955760023 0.93501519 334337748 cellobiase Isoptericola variabilis 225 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Promicromonosporaceae;genus:Isoptericola;species:Isoptericola variabilis; 1.04652771 0.974106028 0.958082843 0.940849618 1.00675594 1.044695736 1.017079977 0.933166328 0.961712212 1.003002714 0.985890624 0.986216114 0.997313792 1.007315735 0.998315347 0.976391258 0.957871973 1.004556259 119957954 tfda Mycobacterium vanbaalenii PYR-1 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 0.834826731 0.891425252 0.843545277 0.829421147 0.896214662 0.877021122 0.837195266 0.835026984 0.865409252 0.804523172 0.904482361 0.82370718 0.828299997 0.877905414 56477459 terc Aromatoleum aromaticum EbN1 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 1.022111902 1.032593451 1.025600688 1.025159694 0.971675365 1.012718148 0.988211132 0.99667499 1.020135649 1.019573374 0.963038295 1.030830777 0.93423055 0.941613334 0.940217156 0.947902662 1.049042334 1.045163111 91686225 cumb Burkholderia xenovorans LB400 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 0.820943886 0.865796884 0.877489685 0.834855615 0.799003281 339887992 cysI Neisseria macacae ATCC 33926 Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria macacae; 0.793006749 0.851715343 0.837766516 0.77118736 0.848556569 0.825879044 0.831817804 407308409 cmci Nocardia brasiliensis ATCC 700358 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia brasiliensis; 0.91079194 0.996699314 0.895417416 0.972891068 0.94930341 0.932030648 0.917808672 0.88182877 0.95757228 0.948885682 0.911222373 0.943441983 0.916839569 0.864145953 0.815296056 0.894116101 0.981305749 0.930329502 148258806 tfth Bradyrhizobium sp. BTAi1 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 1.182704215 1.195641656 1.159828938 1.187344784 1.201781347 1.190730635 1.180451481 1.15742429 1.18609505 1.161638281 1.178681521 1.182105332 1.186764022 1.16622607 1.14268203 1.146600021 1.199562801 1.185794636 74038434 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.081477047 1.079008112 1.06834501 1.091642881 1.089190269 1.087103681 1.073647728 1.042151072 1.06040183 1.101386877 1.096444873 1.096794233 1.049762094 1.020149916 1.018202718 1.034834936 1.047572472 1.035851245 300789012 catechol_b Amycolatopsis mediterranei U32 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 1.187872883 1.153123426 1.115656637 1.098549567 1.101931571 1.126587316 1.088205434 1.076696699 1.097045174 1.093093751 1.107336738 1.094092879 1.085367828 1.070001515 1.083768935 1.084757546 1.140688268 1.129115476 66267666 nhh Pseudomonas sp. K-9 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.778814442 0.803965714 0.841096795 0.814779565 0.83565111 0.842082199 1.009460962 326331949 bphF1 Nocardioidaceae bacterium Broad-1 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae; 0.925958443 0.873285911 0.901639757 0.911062846 0.92383416 0.874141479 0.924822383 0.923436107 0.900987017 0.889158594 0.872919295 0.848138956 0.884359234 0.819511699 0.825149278 0.808937919 0.895719026 0.88870921 148265954 dsra Geobacter uraniireducens Rf4 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter uraniireducens; 1.045014588 0.999958652 1.04151702 1.053830545 1.156452249 0.981814927 1.141643862 1.062726986 1.056904873 1.105064487 1.139695516 1.092698817 1.096253485 1.037728224 1.039122731 1.085356501 1.04245229 1.025791695 306516909 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.369892029 1.355023822 1.32334625 1.346554757 1.318179999 1.362077779 1.306064918 1.307620859 1.327534509 1.310818659 1.321874422 1.309203312 1.287628365 1.285205328 1.285930143 1.285665883 1.35119683 1.337405766 374585062 ppx Leptonema illini DSM 21528 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Leptospiraceae;genus:Leptonema;species:Leptonema illini; 0.830256244 0.825537516 269955026 endochitinase Xylanimonas cellulosilytica DSM 15894 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Promicromonosporaceae;genus:Xylanimonas;species:Xylanimonas cellulosilytica; 1.452664596 1.424898798 1.434697287 1.440234091 1.426651899 1.438750896 1.428170195 1.461006794 1.422244128 1.418584045 1.420135923 1.448193143 1.394563542 1.379402432 1.417743325 1.404382764 1.402300411 1.403096386 356659507 vgb Rhodococcus opacus PD630 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus opacus; 0.816464356 0.890557833 0.805427004 0.798689919 0.917729931 0.847555677 0.94106263 0.98944335 0.783077439 0.857945543 0.811300232 0.862620192 0.835092305 0.848351526 196226334 nrfa Chthoniobacter flavus Ellin428 Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria;phylum:Verrucomicrobia;class:Spartobacteria;genus:Chthoniobacter;species:Chthoniobacter flavus; 1.041735355 0.998129098 1.016914976 1.028900168 1.007871135 1.033535979 1.018862628 1.019704363 1.02928959 1.012035401 1.000690874 1.036293014 0.976488695 0.986912544 0.928657857 1.003737314 1.044663498 1.034667513 257202043 amyA Roseburia intestinalis L1-82 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Roseburia;species:Roseburia intestinalis; 0.853267423 0.799122178 0.864959364 0.825457186 163761346 arsc Hoeflea phototrophica DFL-43 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Hoeflea;species:Hoeflea phototrophica; 1.250845261 1.22455537 1.201809254 1.201687919 1.188842217 1.25459978 1.172304617 1.181442624 1.206913158 1.199817011 1.194268513 1.194203945 1.184026053 1.192772001 1.189033628 1.194740484 1.222886915 1.198605657 118030378 urec Burkholderia phymatum STM815 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 1.004802113 0.973341064 1.01738518 1.031765399 1.002393418 0.9824064 0.994278862 1.020429998 1.018041247 1.021826161 1.00276084 0.993752515 0.964174139 0.930767818 0.948562598 0.934625977 0.994779438 0.986188583 119117077 alpha_tubulin_Oxymonads Saccinobaculus environmental sample Other Phylogenetic NA superkingdom:Eukaryota;order:Oxymonadida;family:Saccinobaculidae;genus:Saccinobaculus; 0.950759387 0.906155173 0.937942679 1.027407183 0.908510598 0.928531783 0.961053305 0.975757895 1.014669671 0.94064204 0.949966385 0.972091969 0.908295938 0.89364823 0.820643412 0.91583642 1.014335316 0.942990077 68250353 catechol Pseudomonas sp. M1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 1.102180515 1.124105806 1.071516282 1.094502839 1.096130503 1.143017872 1.090689362 1.06863491 1.087444519 1.100490571 1.129375524 1.108844707 1.102886561 1.045970351 1.053804438 1.103383103 1.097365386 1.077490386 389864530 badh Modestobacter marinus Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Geodermatophilaceae;genus:Modestobacter; 1.156339801 1.159938442 1.138636816 1.155659708 1.159281511 1.217168338 1.150009118 1.130848519 1.134163774 1.130744605 1.154320906 1.158866952 1.151646077 1.106045698 1.103050418 1.125943995 1.176157889 1.114631881 23330204 one_ring_23diox Sphingopyxis macrogoltabida Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingopyxis; 0.764345426 0.790618678 0.799862162 0.811990977 285878243 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.910311358 0.974489476 0.89873984 0.882854534 0.944945144 0.902491831 0.89974353 0.913976252 0.928889967 0.85990587 0.909095833 0.868946452 0.835456179 0.891986658 0.826163791 0.84394934 0.880634492 0.916588405 347734852 amyA Azospirillum amazonense Y2 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum amazonense; 1.090262718 1.061125949 1.009653149 1.06492976 1.024056349 1.095013195 1.015819148 1.059760408 1.064961079 1.068624191 1.037755831 1.045555405 0.987955944 1.040744205 0.965005172 1.017906006 1.072989643 1.081739011 398346777 chnd Leptospira broomii str. 5399 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Leptospiraceae;genus:Leptospira;species:Leptospira broomii; 0.876587533 0.829706213 0.816705557 0.87523063 0.826932415 0.826292181 0.832774853 0.851927085 0.869752999 0.840286209 0.858996895 0.82065526 0.822734098 0.832420053 0.825060781 0.806416908 0.829904735 294023802 vana Sphingobium japonicum UT26S Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium;species:Sphingobium japonicum; 0.941543612 0.95800494 0.930678082 0.935421905 0.886456807 0.895562033 0.900632165 0.912578207 0.899468096 0.914573134 0.919574226 0.896059976 0.875301943 0.860937668 0.864645759 0.858944628 0.929814482 0.946682097 376379359 cysI Klebsiella oxytoca 10-5245 Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella oxytoca; 0.836625663 0.879782677 0.803409379 0.850072353 0.863429644 0.833585419 0.827881133 0.820263785 0.830206726 0.918306838 119386205 pcag Paracoccus denitrificans PD1222 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 0.957949414 0.968919074 1.000441357 0.951173694 0.955192556 0.972088023 0.927489072 0.958604662 0.950626937 0.948294793 0.985004702 1.006929261 0.930470818 0.925563108 0.888037153 0.957865701 0.944885276 0.986561963 44829093 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 1.078937967 1.04218849 1.051518247 1.169606027 1.083018481 1.006515502 1.053301879 1.067384851 1.090477073 1.070546274 1.06019003 1.108706537 1.005555826 1.002539009 0.993674382 1.026791114 1.061417244 1.033875367 304310503 TIM gamma proteobacterium HdN1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 1.190304609 1.177132155 1.177481342 1.143648887 1.171707979 1.192691494 1.162599014 1.157676586 1.19384593 1.171656844 1.167896594 1.15684223 1.159013848 1.159679112 1.139427775 1.165646699 1.16021518 1.173723916 332665873 terc Haliscomenobacter hydrossis DSM 1100 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Saprospiraceae;genus:Haliscomenobacter;species:Haliscomenobacter hydrossis; 1.008143231 0.995618728 0.98630245 0.996156648 0.954628763 0.95159877 0.957217697 0.956621751 0.969973065 1.001124404 1.003523606 0.948909569 0.951487755 0.966732834 0.915851136 0.907706708 0.978689773 0.990299669 134077948 tannase_Cdeg Aspergillus niger Carbon Cycling Carbon degradation Tannins superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 0.816142273 0.893481717 0.887309087 0.787992368 0.815812165 0.813952937 0.815426687 0.83772897 0.89157931 359404119 amyA Prevotella stercorea DSM 18206 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella stercorea; 1.047463283 1.031347718 1.031846913 1.011502558 0.987826193 0.999028691 0.965487862 1.036570818 1.007790863 1.013257907 1.016814059 1.014995183 1.018912435 1.034643174 0.9920385 1.013545518 1.024732852 1.027449209 119951758 arsc Arthrobacter aurescens TC1 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter aurescens; 0.835375105 0.852297544 0.80077138 0.854737248 0.834143328 0.915967005 0.854111145 0.857221791 0.79750784 0.831040687 0.839817013 0.812580815 0.889483103 262031871 acetylglucosaminidase Vibrio cholerae CT 5369-93 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio cholerae; 1.095927101 1.067659411 1.058964311 1.086485613 1.050036531 1.022133305 1.026309424 1.038404526 1.070749678 1.031363033 1.059187454 1.09712894 1.028533204 1.030437071 0.98037253 1.028768776 1.082311208 1.051362713 365182863 soxY Sinorhizobium fredii HH103 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium fredii; 1.031594938 1.059877224 1.021442833 1.044784532 1.029141964 1.037385373 1.019056405 1.032559915 1.035473112 1.033129808 1.024256564 1.056821108 0.987318537 1.025435898 0.983487766 0.963798912 1.037683038 1.049230132 339018107 GAPDH_Calvin Acetobacter tropicalis NBRC 101654 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acetobacter;species:Acetobacter tropicalis; 0.911045648 0.91612007 0.958155838 0.920980465 0.946197837 0.949263764 0.963161462 0.913782364 0.890739333 0.939599321 0.866319022 0.941849204 0.857034275 0.861404523 0.87135311 0.879878718 1.174165659 0.981773869 11125689 xylanase Penicillium funiculosum Carbon Cycling Carbon degradation Hemicellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium; 0.825787036 0.79634617 0.786634254 0.824197809 169851160 phenol_oxidase Coprinopsis cinerea okayama7#130 Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 0.888244242 0.845621059 0.873532208 0.916642951 0.868663063 0.869620244 0.864850038 0.908681342 0.874357903 0.850305692 0.879327372 0.870832799 0.768750976 0.846641941 0.817015156 0.846621045 0.87300474 0.890708423 319437812 amyA Dietzia cinnamea P4 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dietziaceae;genus:Dietzia;species:Dietzia cinnamea; 1.074370604 1.107651789 1.049400113 1.073553062 1.041758436 1.128205307 1.000788467 1.032537539 1.05020799 1.072796912 1.066377832 1.04711008 1.022894078 1.063899943 0.989883286 0.999255361 1.093839896 1.120773958 313105082 dsrB uncultured prokaryote Sulfur sulfite reduction NA 0.909673428 1.004542432 0.913003969 0.995999609 1.009698311 1.040441461 1.010571129 1.045673155 0.989641861 1.044408907 1.002460657 1.01114259 0.995221367 0.981638874 0.964765666 1.019513309 0.950114636 0.997550316 239802875 cmci Variovorax paradoxus S110 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 0.811471119 0.800891185 0.779723594 0.789405737 326951034 catechol_b Pseudonocardia dioxanivorans CB1190 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Pseudonocardia;species:Pseudonocardia dioxanivorans; 1.44585187 1.444265002 1.410335222 1.421525477 1.396794353 1.453966915 1.404575597 1.433654093 1.396949909 1.384525161 1.404420644 1.404651677 1.393677075 1.397523917 1.379404921 1.393325812 1.424740045 1.408912327 291563209 dsra butyrate-producing bacterium SS3/4 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales; 0.805928136 0.793826434 0.872561004 0.85351148 0.788568402 0.853060804 68345513 xyll Pseudomonas fluorescens Pf-5 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 1.090347646 1.127731523 1.126837366 1.131182599 1.108324688 1.163555996 1.03585209 1.081140293 1.067910396 1.028769974 1.02532947 1.047511056 1.053410179 1.084676934 1.026190271 1.11410133 1.156330095 1.113560401 375754752 linb Gordonia polyisoprenivorans VH2 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia polyisoprenivorans; 0.861715129 0.922405292 0.79536734 0.920603357 0.923599446 0.860563727 0.829218334 0.888521918 0.874352204 0.819130397 0.850915009 0.779191338 0.857252019 0.812822027 0.897528585 0.94251666 119822199 arsc Stenotrophomonas maltophilia R551-3 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 1.107679033 1.052408911 0.978651491 1.043948859 1.048614361 1.032261376 1.07721408 1.052211555 1.069547304 1.077478826 1.036697538 1.042037714 1.001824088 1.042685236 0.984392677 1.043902606 1.039334926 1.060688367 217415750 pula Bifidobacterium angulatum DSM 20098 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium angulatum; 1.147091179 1.122182167 1.152905741 1.152046087 1.1411206 1.154297225 1.147831612 1.118845812 1.130746045 1.19101702 1.219185956 1.168856103 1.134527632 1.159524399 1.121722272 1.16020669 1.113012916 1.130024354 159181310 chnd alpha proteobacterium BAL199 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 1.11161853 1.04624754 1.053781684 1.016090716 1.019758095 1.115488013 0.953341365 1.002757283 0.963509731 1.053042463 1.041413293 1.005707775 0.985049029 1.030200665 1.12137243 1.013600746 1.033724918 1.079714253 363718338 fccab Acetobacteraceae bacterium AT-5844 Sulfur Sulfide Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae; 1.342805957 1.290841818 1.265373943 1.320514125 1.296668287 1.273020629 1.278393011 1.314741402 1.298784504 1.255740457 1.263373304 1.354701307 1.265000556 1.210582342 1.253371463 1.264840336 1.290670887 1.254232864 320121894 arsc Desulfobulbus propionicus DSM 2032 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobulbaceae;genus:Desulfobulbus;species:Desulfobulbus propionicus; 0.863351411 0.92720534 0.906597791 0.924321617 0.943119728 0.953494369 0.875928214 0.889241927 0.876679977 0.902827053 0.914465539 0.921659603 0.828865515 0.868778177 0.839239691 0.873269357 0.87695837 0.921518117 357022658 amyA Mycobacterium thermoresistibile ATCC 19527 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium thermoresistibile; 1.074440773 1.045950602 1.072368536 1.083124235 1.060036132 1.096831472 1.07675233 1.070131025 1.057376705 1.07886705 1.050841772 1.050469654 1.042356708 1.006519899 0.991732032 1.021974682 1.099106998 1.053423232 291416664 cda Oribacterium sp. oral taxon 078 str. F0262 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Oribacterium;species:Oribacterium sp. oral taxon 078; 1.257713367 1.26109753 1.236900055 1.2415361 1.235691155 1.272524781 1.23433774 1.233244962 1.226379317 1.241728116 1.236555564 1.235007368 1.231692458 1.227684794 1.216407987 1.236277361 1.275157091 1.244331795 66846839 amyA Aspergillus fumigatus Af293 Carbon Cycling Carbon degradation Starch superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus fumigatus; 0.86894647 0.893223843 0.924932009 0.877543759 0.869346695 0.90217352 0.925351365 0.913957931 0.841540012 0.846155495 0.874104878 0.932433123 0.823492797 253688715 endoglucanase Pectobacterium carotovorum subsp. carotovorum PC1 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium carotovorum; 0.92592551 1.224328294 0.939107004 0.927138733 0.92687653 0.938606588 0.944359882 0.963257642 0.925098995 0.96703173 0.904690164 0.91177486 0.882668055 0.929775221 0.858026078 0.895576275 0.960806933 1.005779919 99038859 acetylglucosaminidase Silicibacter sp. TM1040 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 1.069565298 1.049040955 1.066434611 1.076624435 1.065598134 1.097039835 1.106995379 1.105414084 1.078088329 1.04170514 0.990770055 1.027904011 1.015086109 0.988135893 0.968174088 0.989540989 1.067569479 1.078676926 307633084 Sir Ferrimonas balearica DSM 9799 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Ferrimonadaceae;genus:Ferrimonas;species:Ferrimonas balearica; 1.146335453 1.174557995 1.145752794 1.184406169 1.169454793 1.208859842 1.179874604 1.201485186 1.172172032 1.178783618 1.175688075 1.142009788 1.184922794 1.120459056 1.125968391 1.120699933 1.219496222 1.182043191 255931851 p450aro Penicillium chrysogenum Wisconsin 54-1255 Organic Remediation Aromatics polycyclic aromatics superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 0.921400725 0.93781465 0.916540478 0.931226528 0.926064535 0.968753757 0.968723532 0.9446775 0.904337429 0.944573716 0.953695718 0.925247422 0.907111565 0.887177214 0.855679514 0.865568711 0.928729272 0.896168334 106769175 fthfs Roseiflexus sp. RS-1 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus; 0.821790896 0.831421092 0.853089987 0.92059038 0.892143605 0.865415188 0.899894235 0.88970197 0.886626615 0.883206278 0.872075099 0.851150006 0.857816178 0.809259578 0.900407128 0.832642576 63081994 nosz unidentified bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.272023733 1.212965193 1.239281008 1.24187632 1.206975589 1.263707709 1.238837584 1.233305913 1.24609239 1.254730849 1.253730701 1.240930295 1.198419365 1.194427192 1.185552779 1.226358427 1.309914838 1.285605145 219939239 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.969499247 0.980378049 0.977503523 1.010880945 1.005441157 0.95327812 0.981500557 0.985868844 1.003516835 0.999092691 0.948845694 1.026781416 0.983973036 0.944940403 0.932503364 1.001780049 0.947654508 0.933920153 357383489 amyA Pelagibacterium halotolerans B2 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Pelagibacterium;species:Pelagibacterium halotolerans; 0.834087839 0.849464468 0.860527028 0.801701745 0.799737064 0.866088935 0.869241956 0.847208624 0.864012919 0.840039349 0.850026276 0.810774352 0.923311466 0.795216106 0.839199077 195931889 catechol Gordonia terrae Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia; 0.842434877 0.877123952 0.801150181 0.903644075 0.909898871 0.938879665 0.906479742 0.810757134 0.855385514 0.929325771 0.884990587 0.918516933 0.876207446 0.896497804 0.845414458 0.87277679 0.888461098 0.909395514 119716380 bphF1 Nocardioides sp. JS614 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 1.067680886 1.124719053 1.069210598 1.095451696 1.07634035 1.127817856 1.052095765 1.050768148 1.049743892 1.082936136 1.097178803 1.088986745 1.053403851 1.05388223 1.059848577 1.077920918 1.099833105 1.072333141 160917729 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.01844309 1.064425033 0.986808506 1.018872486 0.956737489 1.01037473 0.9385804 0.953888195 0.966491507 0.993675512 0.99270971 0.987365641 0.913677101 0.981146781 0.942551768 0.970008976 1.027443636 1.012639238 295661771 phospholipase_D_fungi Paracoccidioides brasiliensis Pb01 Carbon Cycling Carbon degradation Phospholipids superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;genus:Paracoccidioides;species:Paracoccidioides brasiliensis; 0.979109272 0.95278689 0.925213598 0.968510949 0.918665948 0.968449028 0.944407179 0.969599565 0.906762263 0.916853996 0.927471905 0.942182894 0.922876199 0.885043036 0.842625809 0.903354501 0.966277634 0.939137689 299749557 pec_Cdeg Coprinopsis cinerea okayama7#130 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 0.937524086 0.956709508 0.988745618 0.903137799 0.937903001 0.923498987 0.920620794 0.936412532 0.90622782 0.91486162 0.896417764 0.937499337 0.864570051 0.964404927 0.854956923 0.861025006 0.98609686 0.96509654 373251730 amyA Nesterenkonia sp. F Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Nesterenkonia; 0.828451964 0.85526407 0.877422783 0.847856773 0.885029013 0.866904225 0.867399728 1.027735943 0.865646871 0.927488372 0.923516666 0.839367486 0.90264983 0.858823226 0.836104415 0.874502042 320123528 dsrB Desulfobulbus propionicus DSM 2032 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobulbaceae;genus:Desulfobulbus;species:Desulfobulbus propionicus; 0.795352556 0.802200279 0.807686546 0.852957922 0.814565451 0.808527179 0.826498447 0.85428535 63256204 phn Pseudomonas syringae pv. syringae B728a Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae; 1.392470273 1.34118138 1.315343943 1.348695082 1.311094748 1.352749384 1.310998423 1.332995218 1.340590979 1.326531781 1.331305357 1.346275717 1.300624728 1.302127399 1.293041043 1.324916381 1.363309099 1.325832097 62825531 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.876551631 0.832207362 0.923669422 0.918620384 0.878865958 0.879361776 0.86172773 0.878280866 0.89574215 0.852029491 0.833650795 0.899834929 0.833072226 0.844490797 0.801005732 0.903371093 0.852530501 293394518 cueo Serratia odorifera DSM 4582 Metal Homeostasis Copper Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia odorifera; 1.098010479 1.106964123 1.015976907 1.057607563 0.97725026 1.096740346 1.024947494 1.03794048 1.046117729 1.064906311 1.023470043 1.064307048 1.009941095 1.043771693 1.007293608 1.05623069 1.060633242 1.082424263 57335474 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.256475561 1.199544293 1.242664344 1.234440742 1.261338871 1.236516934 1.220468382 1.257510494 1.214801089 1.245838034 1.217730471 1.229793166 1.202122191 1.202183417 1.217720797 1.202044982 1.213276943 1.229577161 365270372 tktA Bradyrhizobium sp. ORS 285 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.946693914 0.915612052 0.940362219 0.899493643 0.926523653 0.913853177 0.849227584 0.83377031 0.871373554 0.906951437 0.904395704 0.891393143 0.846725843 0.922618222 0.950122043 0.931779414 0.944433632 1.003450469 119670557 xylj Azoarcus sp. BH72 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 0.978597866 0.787904954 242218040 glucoamylase Postia placenta Mad-698-R Carbon Cycling Carbon degradation Starch superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Postia;species:Postia placenta; 0.768651916 0.805449847 73534317 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 1.108853813 1.035231582 1.115640395 1.080494633 1.105816311 1.121584572 1.122695883 1.055028032 1.084350625 1.151484948 1.152704653 1.091474625 1.11982432 1.124071969 1.182546149 1.093871884 1.086042011 1.113234411 126731818 nitrilase Sagittula stellata E-37 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 0.851637618 0.85442342 0.889592094 0.912318271 0.822735532 0.815037879 20804135 phn Mesorhizobium loti Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium; 0.972610175 0.982660926 0.923570406 1.059554063 0.953345828 0.947800656 0.89186834 0.932391891 0.956145835 0.935694168 0.966786376 0.928845949 0.932955077 0.918256773 0.891301521 0.944575527 0.970352378 0.954029289 271966336 acetylglucosaminidase Streptosporangium roseum DSM 43021 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 1.241988737 1.226220696 1.223287926 1.239743324 1.205746259 1.243543512 1.206753648 1.228344441 1.213558031 1.195266787 1.211108985 1.208973599 1.20924819 1.170937501 1.210124568 1.206049146 1.255409394 1.214859939 111073771 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 0.885125797 0.880935094 0.871320345 0.872778362 0.848351342 0.881376928 0.837986382 0.86091877 0.880837679 0.912742678 0.810814003 0.904257751 0.846792567 0.848064438 0.858196817 0.860362938 0.867634878 0.881966087 359786431 amyA Halomonas sp. GFAJ-1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas; 1.002811956 0.983188416 0.909241528 1.024867332 0.952254145 0.972614672 0.919622789 0.958100237 0.920153857 0.950699071 0.887091323 0.949758275 0.928930485 0.911996569 0.807778751 0.924486871 1.005566599 1.006611695 46307954 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.802013073 0.814089572 0.790165689 83856439 amyA Croceibacter atlanticus HTCC2559 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Croceibacter;species:Croceibacter atlanticus; 1.037410385 1.047093369 1.074889899 1.055380473 1.077642161 1.063415754 1.088168592 1.081738753 1.07401273 1.057855164 1.045691695 1.06430574 1.043511335 1.006169215 0.988691088 1.011472117 1.056216314 1.038469565 74038454 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.926369062 0.919776677 0.933117244 0.919405502 0.968067938 0.929242194 0.936125071 0.886443556 0.923598915 0.9454589 0.899277951 1.02292555 0.896478372 0.924971065 0.897945513 0.930262945 0.909444909 0.896252302 147886244 phenol_oxidase uncultured bacterium Carbon Cycling Carbon degradation Lignin superkingdom:Bacteria; 1.052006405 0.995083843 0.990070837 1.035149607 1.018076792 1.015269375 0.999479752 1.014634117 1.026822266 1.013867431 1.009446403 1.043547528 0.983049277 0.955630467 0.955120584 0.970109067 1.023712092 1.027982027 300310483 mdlc Herbaspirillum seropedicae SmR1 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herbaspirillum;species:Herbaspirillum seropedicae; 0.929201342 0.933039437 0.891525416 0.927130217 0.957323362 0.914685884 0.914986933 0.909255173 0.923303166 0.912635316 0.944631357 0.990164556 0.895762971 0.873946406 0.928444293 0.90179191 0.940571381 0.883143813 326383814 arsc Gordonia neofelifaecis NRRL B-59395 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia neofelifaecis; 0.8758308 0.935504001 0.80295018 0.909168005 0.874919637 0.851285866 0.813613193 0.912800319 0.925496312 0.936035439 0.862845051 0.806569026 0.912577954 0.961029298 226226109 arsm Gemmatimonas aurantiaca T-27 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Gemmatimonadetes;class:Gemmatimonadetes;order:Gemmatimonadales;family:Gemmatimonadaceae;genus:Gemmatimonas;species:Gemmatimonas aurantiaca; 0.821175226 0.820338047 359423681 bphd Gordonia amarae NBRC 15530 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia amarae; 0.868094611 0.837099277 0.801333409 0.812342722 0.809401291 0.819458122 0.796523701 0.839838237 0.849248057 139478511 mer uncultured soil bacterium Metal Homeostasis Mercury Detoxification superkingdom:Bacteria; 0.81993453 0.890353101 0.812540955 0.84222764 0.835754168 0.800081843 0.781506417 0.774809903 0.874591077 0.850852733 82393828 xylg Pseudomonas sp. KB35B Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria; 0.826478066 0.791482167 209401692 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.961587893 0.928700175 0.954720087 0.964826817 0.975185061 1.003189153 0.942373104 0.963680934 0.975337462 0.958584703 0.952736925 0.943578226 0.898055659 0.915676659 0.904484177 0.916177175 0.944331394 0.960863887 121610994 pgk Verminephrobacter eiseniae EF01-2 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 1.013697111 0.954300581 1.019680908 0.989960319 1.035176054 0.991505931 1.025164615 1.035141403 1.041339063 1.01827324 1.024810951 1.01144149 0.992043387 0.95796101 1.001118967 0.98234312 1.026468723 0.988387542 328938200 terc Paenibacillus sp. HGF5 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 0.953800951 0.831238183 0.887464203 0.910873423 0.910892595 0.86299615 0.933832892 0.918523129 0.848425714 0.803057736 0.813426858 0.909644069 0.931554061 139478613 mer uncultured actinobacterium Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria; 0.943277498 0.910113103 0.887340457 0.906189004 0.852762074 0.919725824 0.846905957 0.8652006 0.935683876 0.918582214 0.868657621 0.919453975 0.841319971 0.871449765 0.787248869 0.831678478 0.902961885 0.873590071 126635945 alkb Nocardia sp. SoB Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia; 0.864247186 0.933842931 0.804810612 0.900532116 0.860065258 0.893979723 0.790897153 0.795512543 0.901937065 0.829213654 0.840466715 0.820329186 0.854942123 0.877532874 0.892979994 320534421 amyA Actinomyces sp. oral taxon 171 str. F0337 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 171; 1.228451007 1.176776827 1.174611237 1.201584377 1.157416631 1.210441177 1.175717372 1.179675272 1.191848706 1.179953332 1.161345668 1.187246679 1.144168557 1.158551178 1.162675697 1.174812906 1.216966136 1.188904198 119374199 FBPase Paracoccus denitrificans PD1222 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 1.123992496 1.152286458 1.118953579 1.097553573 1.101756014 1.15877992 1.089476802 1.08182504 1.102712183 1.101985919 1.093151474 1.089976388 1.096134236 1.083679558 1.086159238 1.109607631 1.143767004 1.131445849 222543212 phytase uncultured bacterium Phosphorus Phytic acid hydrolysis NA superkingdom:Bacteria; 1.475414009 1.393259855 1.436424208 1.458862453 1.445591741 1.442346934 1.425113958 1.411770181 1.442564259 1.431189914 1.421082859 1.492355994 1.391648064 1.378370684 1.372893426 1.42730568 1.451820444 1.406052805 1113123 chitinase Ewingella americana Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Ewingella; 1.164777225 1.144475147 1.099853173 1.211013758 1.119742287 1.151347678 1.11089986 1.097792211 1.103940017 1.106419426 1.113952288 1.104882182 1.111971676 1.099434523 1.06434382 1.118792686 1.147983736 1.13128033 374659403 ppx Saccharomonospora cyanea NA-134 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora cyanea; 0.869377853 0.887452153 0.903294661 0.925849515 0.989554742 0.96349376 0.949240849 0.898854961 0.830912177 0.959535576 0.906544036 0.927363221 0.955800999 0.93357636 0.903329709 0.925437061 0.932077749 0.91471274 345897105 CsoS1_CcmK Collinsella tanakaei YIT 12063 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Collinsella;species:Collinsella tanakaei; 1.216008662 1.206553687 1.193847837 1.183901057 1.194972078 1.202142665 1.186951421 1.186241042 1.204070596 1.191135829 1.205821425 1.196369542 1.145031065 1.16837843 1.151960085 1.15321568 1.201388669 1.22663336 384159261 xyla Bacillus amyloliquefaciens TA208 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus amyloliquefaciens; 0.943468671 0.880281701 0.809489295 0.875763593 0.945753851 0.944255719 0.849282152 0.937122602 0.837822016 0.854894515 320103173 ccmL Isosphaera pallida ATCC 43644 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Isosphaera;species:Isosphaera pallida; 0.863035843 0.881750376 0.853948374 0.915743463 0.832211125 0.84724089 0.811167818 0.886663621 0.864917114 0.851120187 0.812374033 0.937276449 0.855308872 384371436 one_ring_23diox bacterium enrichment culture clone pahAc2 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria; 0.86483086 0.864954473 0.856208927 0.830612511 1764155 tfdb Ralstonia eutropha Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 1.251439548 1.293534809 1.24302956 1.240905779 1.226958904 1.277842912 1.212151474 1.18638873 1.233166156 1.222985489 1.214237396 1.222168472 1.201296372 1.190395848 1.20306092 1.196875154 1.261567037 1.236844202 237846161 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.943632723 0.895407856 0.944281155 0.966706827 0.952279781 0.938896093 0.959003821 0.952888586 0.969129177 0.930435346 0.898824751 0.921135141 0.879164333 0.880830462 0.852466461 0.877564364 0.969378967 0.95852452 72122661 nbac Ralstonia eutropha JMP134 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 1.180217729 1.142530443 1.134785773 1.168535524 1.110168293 1.177155921 1.109350552 1.145952155 1.154882343 1.13615022 1.111482019 1.123586776 1.093543287 1.118677222 1.06926875 1.124872938 1.165281888 1.15339672 31620028 alkb Mycobacterium bovis AF2122/97 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium bovis; 1.403230868 1.379254182 1.371465668 1.384748055 1.355412245 1.414407549 1.360753853 1.362334896 1.375725477 1.33162785 1.357969119 1.345513481 1.334910427 1.322585933 1.336867127 1.345612041 1.395272291 1.340994664 56312526 bbsg Azoarcus sp. EbN1 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 1.036677827 1.073860142 1.057136284 1.078557043 1.014401752 1.046177119 1.02767103 1.086193304 1.064913846 1.034948842 1.016394732 1.050619953 1.004229768 1.026027361 0.937640158 1.014465567 1.030781171 1.051574685 90106259 nhh Rhodopseudomonas palustris BisB18 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 0.916817163 0.978288391 0.902003526 0.889379739 0.883570302 0.956540418 0.836631628 0.891216977 0.877139297 0.889734516 0.866285295 0.927863356 0.857018651 0.855567013 0.870660675 0.904519821 0.935393268 0.946964859 300114649 mer Nitrosococcus watsonii C-113 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Nitrosococcus;species:Nitrosococcus watsonii; 0.774141566 0.826646013 145322744 catb Novosphingobium aromaticivorans DSM 12444 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium aromaticivorans; 1.360119246 1.327146811 1.303926426 1.324083103 1.264471334 1.330051853 1.269410791 1.304604286 1.293040372 1.303871474 1.280643659 1.308612499 1.27565403 1.274863 1.250598536 1.290965463 1.342898166 1.301765688 316981080 nirk uncultured proteobacterium Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria; 1.011641022 0.987958957 0.954251645 0.977215355 0.967546537 1.004220997 1.002795949 0.956425426 0.9667968 0.984602669 0.974197905 0.969523955 0.965705732 0.939079797 0.941335612 0.972555392 0.984670815 0.985314803 345633979 endoglucanase Streptomyces zinciresistens K42 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces zinciresistens; 1.01806917 1.005572684 0.997303635 1.017431462 0.945390218 0.977993964 0.912443767 0.980821798 0.999108137 0.97748012 0.958427163 1.001690449 0.970839955 0.978972004 0.924113358 0.956212301 0.993090726 1.000173361 41386477 phenol_oxidase Lepista flaccida Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Tricholomataceae;genus:Lepista; 0.842144111 0.823260539 0.847560289 0.80531506 0.809602463 0.815512489 0.839045237 0.840027906 377832665 badh Lactobacillus mucosae LM1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus mucosae; 1.140855087 1.05155581 1.071448023 1.136910944 1.082951758 1.08961219 1.094136871 1.112100717 1.106422232 1.094918244 1.064705589 1.137030545 1.052848264 1.014490027 1.08021076 1.059388689 1.133774681 1.071641283 158251644 aps_apra uncultured alpha proteobacterium Sulfur adenylylsulfate reductase NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 1.249223038 1.217080375 1.231815672 1.20224728 1.17111283 1.212688443 1.173920799 1.203280954 1.227283235 1.212137208 1.188458786 1.231452132 1.176459607 1.167199156 1.159200927 1.186693022 1.231663032 1.204603039 372000036 merb Rhodococcus sp. Mel Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 1.315490321 1.289266722 1.300846455 1.339988888 1.298831659 1.334431495 1.283162963 1.280075104 1.32308653 1.246438924 1.244581233 1.281053255 1.24329242 1.225332855 1.252364764 1.274341102 1.338728747 1.290931819 385274959 merb Pseudomonas sp. K-62 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 1.143202989 1.255777354 1.121695182 1.114704191 1.096377076 1.152021448 1.052904784 1.072860702 1.118226989 1.12613666 1.11811782 1.0970517 1.082130784 1.133442395 1.073100674 1.084856588 1.13423914 1.144660411 322395124 mer Methylocystis sp. ATCC 49242 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylocystaceae;genus:Methylocystis; 0.803470458 0.869266971 0.78402015 0.87068794 0.83860287 0.808076898 0.891415548 0.873094674 341953210 urec Haemophilus haemolyticus M21639 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Haemophilus;species:Haemophilus haemolyticus; 0.924273735 0.972922451 0.985496661 0.9464328 1.002386976 0.965091877 1.020479162 0.981306562 0.963272369 0.975975373 0.984640539 0.967332836 0.995425071 0.935383814 0.914146106 0.958960544 0.937075894 0.978390968 254029700 narb uncultured bacterium Nitrogen Assimilatory N reduction NA superkingdom:Bacteria; 0.999564493 0.943588898 0.900085307 0.925239895 0.863261636 0.887850509 0.891796805 0.929315846 0.925150935 0.88990419 0.801222973 0.873315979 0.855827704 0.920970108 0.846453054 0.955843874 0.942260904 163758822 tktA Hoeflea phototrophica DFL-43 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Hoeflea;species:Hoeflea phototrophica; 1.088739583 1.065695129 1.064517005 1.077189691 1.060785926 1.0846497 1.074800767 1.1027644 1.074972397 1.07031038 1.031513767 1.078860471 1.003446708 1.023398561 0.965939606 1.014741416 1.080724715 1.086220805 111150376 limeh Frankia alni ACN14a Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia;species:Frankia alni; 1.020025168 1.048118121 1.006258206 1.048293721 0.999611268 1.020866793 0.978155161 1.001796635 0.993734407 0.995088969 0.9851639 1.012573172 0.988130167 0.999818684 0.978317315 1.015136059 1.032550248 0.9916062 289208858 tehb Thioalkalivibrio sp. K90mix Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio; 1.072062374 1.065477677 1.072237968 1.062865707 1.027496859 1.10573084 1.025616563 1.019788388 1.084543362 1.070714997 1.032518091 1.053099332 1.031046226 1.070620713 1.055806361 1.038442547 1.094957579 1.071040413 227100384 xyla Geodermatophilus obscurus DSM 43160 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Geodermatophilaceae;genus:Geodermatophilus;species:Geodermatophilus obscurus; 1.15851543 1.081478445 1.132634319 1.1572353 1.089348808 1.101397602 1.092514374 1.115592079 1.122789011 1.092692112 1.101484735 1.090005828 1.070329967 1.072403914 1.05537989 1.086092762 1.22583952 1.093902621 168805058 aoxb Thiomonas sp. WJ68 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Thiomonas; 0.933775377 0.899966477 0.884388514 0.89093965 0.878594215 0.809651806 0.856113113 0.897718383 0.86245 0.811645943 0.859719342 0.849561338 0.817034272 0.848901999 0.89264348 0.896862816 34494854 urec Haloarcula argentinensis Nitrogen Ammonification NA superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloarcula; 0.902835141 0.787420517 0.810845483 0.816944623 0.903828602 0.798255784 0.796454517 0.819789209 0.933091345 0.880732225 377531573 bphF1 Gordonia terrae NBRC 100016 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia terrae; 0.956438608 0.942338941 0.950691967 0.951391366 0.955828638 0.981252221 0.941506592 0.967244751 0.944036026 0.93316397 0.922223628 0.933670359 0.890615208 0.918322332 0.888701799 0.895914486 0.973093687 0.987211685 351591786 mer Pelagibacterium halotolerans B2 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Pelagibacterium;species:Pelagibacterium halotolerans; 1.122548688 1.164926647 1.080610398 1.131532338 1.094495046 1.140698464 1.085145065 1.09777307 1.127254348 1.103808346 1.136504878 1.123148881 1.106857575 1.092277917 1.073166992 1.113237355 1.118401446 1.129011472 121589951 TIM Halorhodospira halophila SL1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Halorhodospira;species:Halorhodospira halophila; 1.169593088 1.148392224 1.108853513 1.152440635 1.07625483 1.16757154 1.047319975 1.106399556 1.150858145 1.119227643 1.108126248 1.10245863 1.092977835 1.108701797 1.069606275 1.086146438 1.158730442 1.10405372 306532907 amyA Spirochaeta thermophila DSM 6192 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Spirochaeta;species:Spirochaeta thermophila; 0.993726543 0.993732664 1.037259528 0.9704924 1.008466535 1.031057011 0.958685429 0.957356188 0.973520215 1.008607568 1.006786844 0.972559486 0.959905626 0.916637372 0.922201676 0.935421895 1.004209015 1.007085518 375140317 cmci Mycobacterium rhodesiae NBB3 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 0.832423194 0.852565974 0.803747119 0.838735531 0.79989777 0.788822859 0.837088195 0.870290072 0.891338193 258511727 chitinase Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Alicyclobacillus;species:Alicyclobacillus acidocaldarius; 1.078245321 1.033521676 1.02964587 1.071562879 1.018921825 1.066118862 1.039038315 1.054949207 1.048366888 1.035102519 1.014981238 1.048968154 1.014525359 1.009288897 0.989737142 1.016560646 1.055342852 1.081500884 302531543 linb Streptomyces sp. AA4 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 1.656034072 1.630158521 1.611652763 1.61514156 1.596094031 1.643840778 1.585859096 1.613928262 1.59410113 1.584101694 1.6017863 1.60541698 1.581640541 1.563300294 1.587821074 1.596522002 1.615844276 1.581984844 209486840 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.813551958 0.821179418 0.804426946 0.876727607 0.793259556 0.808151443 0.805371388 356690911 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.120710953 1.12115206 1.058865861 1.101577014 1.014769169 1.097456436 0.979446878 1.030093729 1.104402802 1.039140378 1.04093928 1.05317464 1.033000292 1.024043572 1.008793485 1.034971487 1.098905771 1.047375362 373941337 FBPase Ectothiorhodospira sp. PHS-1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Ectothiorhodospira; 0.972557698 0.945295074 0.945787132 1.003954647 0.957496306 0.94832272 0.938650315 0.880640104 0.959720145 0.912691948 0.914999753 0.970472058 0.883291216 0.909566073 0.937978647 0.9255821 0.953706355 0.931797653 14289341 bend Rhodococcus sp. 19070 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 1.147425491 1.165293249 1.131417373 1.15011857 1.180604223 1.156042746 1.139613882 1.142873731 1.127348601 1.138773604 1.12957896 1.144221007 1.141996811 1.109753553 1.073283996 1.133126396 1.147710057 1.135403147 91777976 tfda Burkholderia xenovorans LB400 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 0.930536079 0.913841479 0.887643717 0.95169499 0.862873803 0.898790695 0.908591413 0.910625564 0.90691486 0.919953516 0.864828899 0.89821339 0.850413611 0.876636003 0.83276349 0.892345564 0.880428438 0.901974544 223895618 heparinase bacterium Ellin514 Carbon Cycling Carbon degradation Heparin superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobia subdivision 3;genus:Pedosphaera;species:Pedosphaera parvula; 0.974529414 1.011802359 0.931540388 0.993600844 0.974297357 1.010848634 0.940460729 0.969069185 0.939521345 0.989968445 0.952813215 0.969785785 0.998419123 0.914520064 0.909067595 0.974316951 0.97042009 0.995632558 167588045 poba Burkholderia ubonensis Bu Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ubonensis; 1.003265534 0.990318057 1.009525471 1.018662161 1.01259951 1.015171566 0.965045186 0.94385767 0.992916114 1.007547739 1.007699818 0.979640654 0.982911663 0.992896356 0.955307792 0.957721608 1.009269329 1.014428149 77799789 bend Burkholderia gladioli Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 1.249131926 1.219639695 1.219697087 1.210956177 1.201206122 1.239985217 1.179313419 1.186053175 1.188086269 1.189538607 1.211366032 1.208679916 1.204123622 1.1894527 1.18322148 1.213586005 1.242939676 1.198469425 333919007 amyA Amycolicicoccus subflavus DQS3-9A1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Amycolicicoccus;species:Amycolicicoccus subflavus; 1.097123725 1.102161177 1.074024139 1.139001159 1.083321116 1.103110717 1.053568328 1.123121022 1.098191858 1.054160806 1.073749455 1.131976834 1.032796668 1.024027895 1.046117085 1.06846156 1.097541921 1.033222703 379724036 b_lactamase Paenibacillus mucilaginosus 3016 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 0.878997718 0.910309427 0.917031059 0.958725636 0.922167854 0.922073552 0.942066365 0.924862036 0.933954878 0.90009892 0.884123231 0.898859686 0.921306976 0.852797602 0.88145295 0.913278772 0.942325692 0.914199467 82470014 mnp Ganoderma formosanum Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Ganodermataceae;genus:Ganoderma; 1.091456235 1.043370506 1.074195548 1.020700821 1.039004282 1.150734186 1.041833986 1.079579441 1.035982272 1.065830813 1.028265762 1.03858119 1.032972205 1.051864657 1.072499901 1.092206562 1.086370006 1.058434531 391323545 amyA Shigella flexneri 1235-66 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Shigella;species:Shigella flexneri; 0.990293762 0.937590359 0.98617106 0.916861099 0.928493092 0.913594454 0.833480749 0.888522897 0.935682563 0.912940472 0.972200741 0.929601645 0.904711597 0.927895322 0.892150178 1.091119929 0.952147794 0.962034547 219939001 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.824835922 0.915752173 0.973875943 0.822673036 50119068 pme Pectobacterium atrosepticum SCRI1043 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium atrosepticum; 0.778150532 0.801291104 0.847593689 0.83645008 0.817964492 0.816731233 372280099 ara Oceanicola sp. S124 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola; 1.213010682 1.215390928 1.178707688 1.191253462 1.205348999 1.238544457 1.191688742 1.184642507 1.19258101 1.196759136 1.217548581 1.232677257 1.216149113 1.202595188 1.24228036 1.200269843 1.216992311 1.185913325 145217785 alkb Mycobacterium gilvum PYR-GCK Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 0.967143309 1.00739626 0.957934302 0.972355019 0.983779064 0.981966896 0.971756471 1.071422997 0.960384557 0.985036632 0.969093388 0.983868117 0.954463063 0.948253342 0.886281318 0.95684162 0.932406674 1.00272894 340788163 acetylglucosaminidase Collimonas fungivorans Ter331 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Collimonas;species:Collimonas fungivorans; 0.938736819 0.965706512 0.892336589 0.953724223 0.928301626 0.9768167 0.944407021 0.956491521 0.971558001 0.972947571 0.917242637 0.97435397 0.923450646 0.909494404 0.889250962 0.905764954 0.957083673 0.948474881 302676203 p450aro Schizophyllum commune H4-8 Organic Remediation Aromatics polycyclic aromatics superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 1.090037177 1.029752475 1.041774523 1.082873178 1.029232483 1.037082172 1.013849032 1.069940501 1.074016176 1.022721755 1.009761198 1.045020619 1.023017136 1.02993413 1.076392509 1.029307765 1.078838319 1.044346027 144899536 cellobiase Magnetospirillum gryphiswaldense MSR-1 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum gryphiswaldense; 0.82081294 0.900152938 0.871882475 0.91453666 0.936690941 0.877723542 0.900731017 0.88645023 0.895584357 0.91967029 0.888609162 0.90815063 0.822556113 0.883440004 0.848501414 0.93047718 0.854350581 0.911336131 73762838 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.965993451 1.012665445 1.075257778 1.018551012 1.024418102 1.056655601 1.039248245 1.011066584 1.032416246 1.048869533 1.018720652 1.026651991 0.968624145 0.964903309 0.96394288 1.008468948 1.057209792 1.057985932 46128463 cellobiase Gibberella zeae PH-1 Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Gibberella;species:Gibberella zeae; 0.921771716 0.902106628 0.87715613 0.883196981 0.835261535 0.851581401 0.814482986 0.896729234 0.868294948 0.83015723 0.839394338 0.832519959 0.820357281 0.889840645 0.942155143 0.882116612 377570073 cysJ Gordonia terrae NBRC 100016 Sulfur Reduction NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia terrae; 1.214284158 1.220159907 1.19531668 1.219190224 1.24147769 1.284748021 1.19856358 1.177905551 1.216111307 1.234183775 1.257540419 1.247436597 1.213899449 1.169840356 1.118012499 1.203718302 1.235824601 1.171326945 58616669 nagg Achromobacter xylosoxidans Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter; 0.7761796 0.798593594 0.815958989 0.781959444 0.84939505 0.873965752 0.805542916 0.826412162 0.81607864 0.86717586 0.816145418 49609584 xyla Erwinia carotovora subsp. atroseptica SCRI1043 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium atrosepticum; 0.866082347 0.851869382 0.86607108 0.875160658 0.799037451 0.876721648 0.857267993 0.855990975 0.895546312 0.831278252 0.879262935 0.793164635 0.814368125 0.812493338 0.858064174 0.900133991 315606823 xylanase Prevotella buccae ATCC 33574 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella buccae; 0.850894551 0.853603529 0.921666544 0.8316065 0.868718318 0.873621964 0.894692473 0.803518081 0.882212243 0.841826739 0.861408891 0.871476522 71038612 cysI Psychrobacter arcticus 273-4 Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter;species:Psychrobacter arcticus; 0.831142155 0.876454495 0.85703913 0.783954422 0.840225671 0.910978756 0.797398372 0.824563423 0.842922701 0.847356798 0.860831132 336010766 xylanase Lachnospiraceae bacterium 3_1_57FAA_CT1 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae; 0.879071236 0.828353722 0.849204107 0.849788819 0.798521323 0.852338398 0.827114333 0.809184583 0.859909622 0.809763359 0.812900259 0.866662232 0.873958855 288910630 ppx Azospirillum sp. B510 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum lipoferum; 0.802890345 0.828627007 0.857899752 0.809786073 0.838268536 0.839194044 354510633 amyA Corynebacterium glutamicum ATCC 14067 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium glutamicum; 1.065777483 1.028901153 1.024141468 1.027901553 1.055066177 1.073480209 1.02737001 1.017790833 1.029081628 1.036848517 1.041448586 1.043881122 1.004802374 0.990837098 0.969504897 0.992093909 1.024730574 1.029469926 87281235 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.776037605 0.790968272 33591396 chnc Bordetella pertussis Tohama I Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella pertussis; 1.085921932 1.096330249 1.099485451 1.079825601 1.089159489 1.079682964 1.055914357 1.050436667 1.070629633 1.068057358 1.046298776 1.084660322 1.044263798 1.014044617 1.005413419 1.039731678 1.047499486 1.041663401 78184802 FBPase Synechococcus sp. CC9902 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 0.814178877 0.807936885 0.848687295 0.862611463 0.84630428 0.823584632 0.868738931 0.893155926 0.868192711 0.842933588 0.805572609 0.849659303 0.804212005 0.806900184 0.80324696 0.850641462 0.877478774 71848825 GAPDH_Calvin Dechloromonas aromatica RCB Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Dechloromonas;species:Dechloromonas aromatica; 0.979049084 0.989598977 1.06133501 0.990396607 1.004778931 1.051507093 0.949690611 0.991366717 0.982497802 0.995326099 0.967657144 1.053979946 0.989721703 1.034048504 1.043095784 1.00992231 1.019330047 1.04146036 110734506 rubisco Azospirillum lipoferum Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum; 0.872250928 0.855650768 0.795764578 0.889426037 0.817999411 0.879407589 0.83279607 0.880535444 0.897144997 0.849318073 0.82785682 0.870388542 0.823847803 0.909780499 0.896121467 0.887944816 166859879 hbh Pseudomonas putida GB-1 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 0.878896944 0.891851504 0.874367037 1.002053695 1.116744646 0.983925894 0.827100869 0.83088202 0.917911358 0.913086045 0.807033491 0.897759181 0.827277698 0.936681395 0.880188955 0.941088373 375106676 amie Burkholderiales bacterium JOSHI_001 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales; 0.776639464 0.856426938 0.831304785 0.843856095 0.804991517 0.834815548 0.889786008 0.819102491 0.837023934 0.826376931 161502790 CsoS1_CcmK "Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980" Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 0.952075837 0.980668343 0.962553482 0.969898694 0.937632171 0.942097882 0.919707513 0.942748594 0.964300395 0.938642179 0.944898906 0.957539545 0.925071647 0.921252653 0.926722206 0.912493739 0.965340959 1.011045243 106635938 catechol_b Rhizobium sp. ZJF08 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 1.057767493 1.221778311 0.997200132 1.016139837 1.023694264 1.049674364 1.04853446 1.007371993 1.014519439 0.98858938 1.042424447 1.012780729 0.988984871 0.986322941 0.982763122 1.031857659 1.035148748 1.052130534 338233822 cysI Bradyrhizobiaceae bacterium SG-6C Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae; 0.874270526 0.853369647 0.780085806 0.857478237 0.797665889 0.863767755 0.801407818 0.806754166 0.856321073 0.850339556 0.764856712 0.834657322 302426168 xylg Streptomyces sp. SPB78 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 1.492885363 1.457465004 1.442666733 1.449517096 1.426239935 1.48381919 1.42669849 1.451157044 1.43340264 1.428479339 1.43542873 1.441927126 1.42127023 1.409858644 1.417808321 1.437776083 1.466139179 1.438658129 336300524 cysJ Paenibacillus mucilaginosus KNP414 Sulfur Reduction NA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 0.842050235 0.797478858 0.867279264 0.835911496 0.856483476 0.892530771 0.814227096 0.864400434 0.85429107 0.871531042 0.862108125 0.859144246 0.840325195 0.838390069 0.83679411 82884148 endoglucanase Azoarcus sp. BH72 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 1.025260242 0.864951009 0.896336933 0.960696059 0.945045167 0.896711747 0.85890782 0.881098718 0.973381366 0.911428602 0.898840553 0.899063443 0.911441921 0.89549496 0.85575581 0.874594798 0.926680979 0.909660528 329114531 vana Acetobacter pomorum DM001 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acetobacter;species:Acetobacter pomorum; 0.909718485 0.88979214 0.937110443 0.914436825 0.919483458 0.896336784 0.90697224 0.904943476 0.887856382 0.847587553 0.887573581 0.868195139 0.825285704 0.814123034 0.813498699 0.821581103 0.920675811 0.902619805 126703411 SoxV Rhodobacterales bacterium HTCC2150 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 0.846671365 0.779211095 0.862748351 0.843569846 0.81338089 0.777373658 0.800573013 0.856665255 0.861398615 0.793018098 0.81746318 0.808316403 0.821744377 28144223 urec Phaeodactylum tricornutum Nitrogen Ammonification NA superkingdom:Eukaryota;phylum:Bacillariophyta;class:Bacillariophyceae;order:Naviculales;family:Phaeodactylaceae;genus:Phaeodactylum; 0.846480146 0.796978946 0.811945267 0.819115632 0.803713132 0.822575973 0.820912663 0.79976861 0.820850612 0.84844417 373253227 xyla Nesterenkonia sp. F Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Nesterenkonia; 1.256157416 1.201224035 1.203926815 1.216839499 1.191171442 1.243080707 1.185238583 1.202109005 1.196682906 1.193824877 1.19231981 1.204840728 1.19265764 1.197659893 1.181358231 1.203657744 1.240050476 1.184356313 74038404 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.802861997 0.852596132 0.781877306 0.775176452 0.795178993 0.795876416 0.820156919 0.812153403 99030585 ppk uncultured bacterium Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria; 0.899763742 0.892219466 0.872552412 0.908344645 0.806669005 0.855011093 0.841816527 0.859861796 0.880279659 0.895399365 0.879055036 0.883751721 0.827242241 0.833130898 0.875919219 0.881442566 270277714 pula Bifidobacterium gallicum DSM 20093 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium gallicum; 1.019490456 1.003447227 0.979156 1.039084648 0.980833414 1.012047487 0.980058145 1.052022049 1.012917589 1.00788383 0.996251026 1.006686895 1.004302711 1.004832778 0.999524139 1.034636454 1.030521946 1.010469993 308433813 amyA Dermacoccus sp. Ellin185 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dermacoccaceae;genus:Dermacoccus; 1.032873998 0.99574918 0.991430129 1.017823124 0.964932538 1.020533294 0.962411618 0.977731608 1.006073304 1.007041169 0.98340417 0.961951268 0.911917597 0.99221683 0.932938754 0.957235857 1.033970226 1.043299659 315587869 ppx Intrasporangium calvum DSM 43043 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Intrasporangium;species:Intrasporangium calvum; 1.16153981 1.194466009 1.160606154 1.166416576 1.116301246 1.182800931 1.072654685 1.151269088 1.143480076 1.130683593 1.097863296 1.130788336 1.088214407 1.106060987 1.100748302 1.10043823 1.185688802 1.177737137 91787356 tktA Polaromonas sp. JS666 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 1.143761089 1.122804711 1.092640154 1.101430439 1.066871753 1.104435677 1.065470121 1.114206146 1.069958262 1.075496284 1.090097865 1.10070751 1.051799782 1.063881127 1.054915476 1.083486997 1.113484415 1.11204898 303294354 nitro Ahrensia sp. R2A130 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ahrensia; 0.828283474 0.866202862 0.860695323 0.860145475 0.808103192 0.832406572 0.81647051 0.883537565 0.820891304 0.814585838 0.848120353 0.865787887 0.831716933 0.855707852 0.814578856 126707075 FBPase Sagittula stellata E-37 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 0.884070796 0.784632914 0.864685307 0.856123588 0.854094273 0.832479757 0.821780448 335048688 gdh Megasphaera sp. UPII 199-6 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Megasphaera; 0.987561475 1.006357947 0.978481619 1.039512857 0.983662207 1.023189683 1.012607733 1.008710853 0.97602352 0.968437928 1.009024263 1.011695036 0.998186369 0.964028887 0.966284258 1.027195238 1.032632133 0.964508297 67524979 phospholipase_C_fungi Aspergillus nidulans FGSC A4 Carbon Cycling Carbon degradation Phospholipids superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 1.149869614 1.154845892 1.137024319 1.167053069 1.137506581 1.186566261 1.148239816 1.158838601 1.14741245 1.106643194 1.121280257 1.145802513 1.118694631 1.111555989 1.102129341 1.148166336 1.177621907 1.122971216 299750604 axe Coprinopsis cinerea okayama7#130 Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 1.101653611 1.044767067 1.015824169 1.126347004 1.071909073 1.077493991 1.094315534 1.065554835 1.149756991 1.055958237 1.093362039 1.098420826 1.073334597 1.054727195 1.047218096 1.085155721 1.106785435 1.061337093 255036517 amyA Dyadobacter fermentans DSM 18053 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Dyadobacter;species:Dyadobacter fermentans; 1.004354474 0.985522191 1.007584761 1.063108395 1.043270468 1.034064037 1.030829606 1.014405359 0.995138996 1.027586145 1.050920652 1.117707324 1.032650447 1.002644844 0.960831678 1.034561355 1.051341999 0.952652992 319993261 alginase Microbulbifer sp. 6532A Carbon Cycling Carbon degradation Alginate superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Microbulbifer; 0.831835295 0.925931513 0.83025665 0.965536885 0.880757418 0.872183869 0.90937301 0.860708008 0.848303567 0.805678199 0.870722949 0.810717874 0.859906005 0.851090184 237846130 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.805425906 0.801684248 0.822950916 0.801733469 0.839037889 0.838669517 0.780754357 0.819738452 29466064 norb uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.919845082 0.90001122 0.898585179 0.857321235 0.866134091 0.87587024 0.837338382 0.862907749 0.910233497 0.842103079 0.781640251 0.844230403 0.785288272 0.851505382 111019986 tfth Rhodococcus sp. RHA1 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 0.797796191 0.795472222 223039173 terc Campylobacter rectus RM3267 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter rectus; 0.864498488 0.818240201 0.87501736 0.955356516 0.884849513 0.846461812 0.843635521 0.874402627 0.83466417 0.842844244 0.84807702 0.903808457 0.813597334 0.844243303 0.885042499 0.841865762 0.892523282 194345587 amyA Streptomyces sp. Mg1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 1.089935723 1.068772251 1.0559326 1.083860044 1.004233544 1.078489693 1.026755381 1.087347188 1.067002425 1.050729366 1.016027585 1.069486959 0.966332337 1.053512475 0.973233372 1.026309496 1.087814532 1.106140756 254445717 xylanase Verrucomicrobiae bacterium DG1235 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales; 1.045539634 1.067518906 1.041834939 1.025117896 1.042129298 1.035163602 1.056220757 1.063427324 1.061999743 1.047403227 1.01692834 1.088244049 0.971876009 1.040478852 0.952264033 1.047441927 0.982707921 1.043476975 378747712 aps_apra uncultured Firmicutes bacterium Sulfur adenylylsulfate reductase NA superkingdom:Bacteria;phylum:Firmicutes; 0.798654063 0.873196933 0.852061339 0.827175775 0.872837258 0.878218172 0.838884194 0.87040314 0.823161243 0.840812302 0.796398024 0.872377201 133915046 gdh Saccharopolyspora erythraea NRRL 2338 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 1.077518015 1.092119989 1.064952768 1.052396771 1.036093079 1.06039429 0.993481443 1.037065075 1.037190759 1.047759794 1.02306916 1.053265664 0.991007072 1.040718236 0.982182961 1.003388233 1.055876135 1.101564966 55740951 nifh uncultured nitrogen-fixing bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 1.14442661 1.168432518 1.123725056 1.150800735 1.159568922 1.191082209 1.160518289 1.143110865 1.14999561 1.155998559 1.156690092 1.161355102 1.150188295 1.152926776 1.132294528 1.143854557 1.139780341 1.137934692 214045228 alkj Roseobacter sp. GAI101 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 0.975055815 0.950048758 0.931273083 0.938989246 0.854398915 0.891242661 0.842652262 0.932730832 0.916563731 0.887625066 0.937660212 0.875971415 0.856656942 0.874412183 0.835737069 0.855280874 0.946806551 0.940644091 260861571 ppk Selenomonas sputigena ATCC 35185 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas sputigena; 1.035516152 1.082811562 1.046341019 1.042739087 1.030063721 1.088927327 1.034340367 1.023007377 1.031568052 1.045961446 1.034300921 1.041540001 1.028688663 1.013717991 1.023098713 1.047674776 1.071815765 1.077033972 94449468 mcra uncultured archaeon Carbon Cycling Methane Methanogenesis superkingdom:Archaea; 0.915880692 0.980470151 0.924226503 0.940176072 0.9298915 0.901797007 0.874646017 0.850207114 0.838473188 0.888407088 0.864185257 0.866559043 0.939367235 0.866407711 0.863230757 0.88904754 0.878719696 0.962537105 355541017 mer Mesorhizobium amorphae CCNWGS0123 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium amorphae; 0.951468158 0.889707681 0.929395925 0.942661751 0.823770127 0.813501037 0.874258927 0.868474756 0.966153659 0.884602692 0.874227432 0.875259634 0.837732351 0.917680964 0.862330435 60593161 dsrB uncultured prokaryote Sulfur sulfite reduction NA 0.769230738 0.825454059 126727825 SoxV Rhodobacterales bacterium HTCC2150 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 0.921354543 0.920659789 0.873429924 0.970065403 0.836261663 0.893154557 0.862411394 0.895440214 0.94564627 0.885817428 0.903110856 0.924928178 0.848170841 0.862068943 0.841476525 0.88376156 0.962203371 0.85781189 217978571 cysJ Methylocella silvestris BL2 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Methylocella;species:Methylocella silvestris; 1.01925952 0.989776296 0.958772324 1.016919008 0.94488957 0.96463802 0.942936305 0.959665371 0.987244521 0.935310366 0.939692314 0.96942448 0.942170985 0.940054206 0.969807325 0.952694008 0.992500937 0.97910825 38049254 mer Enterococcus faecium Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Enterococcaceae;genus:Enterococcus; 1.107666614 1.119940602 1.106915209 1.139871744 1.100065651 1.111459091 1.101559327 1.115747433 1.090096876 1.101668878 1.113050165 1.143602079 1.102225326 1.116716992 1.088679087 1.107071264 1.102019008 1.059010218 291197242 exoglucanase uncultured fungus Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi; 0.842695727 0.841405195 0.791028083 0.867134361 0.858581699 0.823120479 0.8671707 0.853570237 0.794078656 0.80937011 0.772416001 0.821829108 0.859844724 0.883832874 0.898615363 107856921 ppk uncultured bacterium Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria; 1.243489019 1.213149411 1.222553814 1.2349403 1.21345402 1.223642387 1.215511008 1.223332145 1.219339685 1.195074318 1.188060127 1.226993084 1.190524407 1.139045859 1.177438286 1.203320368 1.224161372 1.183867986 343402166 amyA Actinomyces sp. oral taxon 175 str. F0384 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 175; 1.024769088 1.044288861 1.008961054 1.065077051 1.032005754 0.982421484 1.048772637 1.019153144 0.991619395 0.973053515 1.000454723 1.024731212 0.96507834 0.904403424 0.919828794 0.9495322 0.99239728 0.991832458 307745716 gdh Arthrobacter arilaitensis Re117 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter arilaitensis; 0.991695982 0.960921033 0.981522146 0.982455805 0.980793361 0.945689637 0.97808851 0.981142852 1.021689782 1.03503651 0.990271559 0.994130616 0.944050684 0.92355547 0.893199359 0.912337812 1.026547466 1.02035026 225351714 amyA Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium pseudocatenulatum; 1.300727385 1.254399583 1.245371418 1.289065624 1.255418186 1.312123586 1.268367213 1.294368605 1.262450796 1.252024114 1.246277107 1.253255161 1.224844805 1.195268072 1.195026685 1.235857383 1.299465821 1.280464458 288867288 amyA Clostridium hathewayi DSM 13479 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hathewayi; 0.823893535 0.783738637 0.850812743 0.837631536 0.858861993 0.886082148 0.848089812 147676775 arsm Pelotomaculum thermopropionicum SI Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Pelotomaculum;species:Pelotomaculum thermopropionicum; 1.017803094 1.084692346 1.07616958 1.001129198 0.991872266 1.051650589 0.978271208 0.995191787 1.014518428 0.977875699 1.002562209 1.002874137 0.98083761 0.996545733 0.944440795 0.981192164 1.031455591 1.012543216 164456200 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 0.90194736 0.955093199 0.9219167 0.886191246 0.877418888 0.952883714 0.876389113 0.922032307 0.921989932 0.959860271 0.894032361 0.872096663 0.840406547 0.943622018 0.801592307 0.899467704 0.893104205 0.951759609 328523611 amyA Bacteroides clarus YIT 12056 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides clarus; 1.073783675 1.078076556 1.044366972 1.048684244 1.032381752 1.110254244 1.060796269 1.05379745 1.050936115 1.128212292 1.107108459 1.061421544 1.047830693 1.109168102 1.029772391 1.06623521 1.05230122 1.080396929 319993784 amyA Anaerolinea thermophila UNI-1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Chloroflexi;class:Anaerolineae;order:Anaerolineales;family:Anaerolineaceae;genus:Anaerolinea;species:Anaerolinea thermophila; 1.132999948 1.129262725 1.120585405 1.158639039 1.106132107 1.137629403 1.094215502 1.135488397 1.138804919 1.117372731 1.083357703 1.094266232 1.084249162 1.112530426 1.073194124 1.109896737 1.164347342 1.124926556 153010732 xyla Ochrobactrum anthropi ATCC 49188 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum anthropi; 0.78852902 0.791982379 0.812155192 0.819567354 0.801972813 0.819712875 260417202 pgk Silicibacter lacuscaerulensis ITI-1157 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria lacuscaerulensis; 1.158659919 1.165476955 1.128138184 1.155268253 1.132273655 1.161370298 1.091979456 1.112866657 1.094841222 1.120174578 1.132272913 1.099434937 1.132622995 1.086022685 1.096814304 1.086745507 1.173512401 1.128472607 374657856 ppx Saccharomonospora marina XMU15 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora marina; 1.069968487 1.026110946 1.040279042 1.046177678 1.064816285 1.048644679 1.053201406 1.057800662 1.0220792 1.05346778 1.041467567 1.033442802 0.986627997 0.979844703 0.981363551 0.963603681 1.049433525 1.000377218 87285064 CsoS1_CcmK Blastopirellula marina DSM 3645 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Blastopirellula;species:Blastopirellula marina; 1.146675494 1.121119295 1.107526118 1.151948949 1.100452505 1.125143716 1.120416487 1.183259256 1.183746512 1.125120313 1.11682795 1.153547646 1.091335298 1.100640279 1.10449033 1.112355738 1.095328136 1.097146908 124267464 catechol_b Methylibium petroleiphilum PM1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 0.951083273 0.907135413 0.904799688 0.892436553 0.911170418 0.914073456 0.919004608 0.902113287 0.876818918 0.946358252 0.908954692 0.926358749 0.864355842 0.896671603 0.85672805 0.902039456 0.914883856 0.950743014 40787206 hcab Rhodococcus sp. DK17 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 1.085909632 1.108794143 1.090060573 1.094833981 1.090685588 1.098945777 1.079081795 1.066743606 1.086583707 1.081845535 1.088992476 1.082419563 1.08074958 1.064447361 1.062012948 1.072317506 1.110084382 1.105145629 196482278 tfda uncultured bacterium Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria; 1.090159915 1.097118172 1.115725576 1.071129212 1.023542464 1.102361822 1.022370678 1.071729075 1.07901788 1.091122701 1.031566662 1.078698849 1.001957781 1.060023132 1.034973018 1.083509257 1.098474988 1.129679983 288350717 arsc Frankia sp. EUN1f Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 1.149518147 1.093851036 1.103934378 1.125715198 1.046733558 1.106517675 1.030848915 1.073489135 1.109061317 1.071948728 1.080617466 1.074025083 1.029178427 1.065351038 0.999681238 1.050639871 1.128708293 1.083362926 398127579 xylj Pseudomonas sp. GM18 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.785650994 0.883997907 0.809703613 0.811743702 0.850821406 0.80533828 346312270 amyA Collinsella tanakaei YIT 12063 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Collinsella;species:Collinsella tanakaei; 0.98324678 0.959973459 0.961789339 0.950233673 0.909090968 0.923564667 0.868207282 0.917359215 0.953928753 0.945745753 0.957017803 0.927682622 0.932343079 0.930971145 0.892435397 0.905832167 0.961700253 0.95422558 269099332 ccmL Thermanaerovibrio acidaminovorans DSM 6589 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Synergistetes;class:Synergistia;order:Synergistales;family:Synergistaceae;genus:Thermanaerovibrio;species:Thermanaerovibrio acidaminovorans; 1.370127842 1.319313485 1.352808308 1.377347834 1.364718714 1.361177928 1.354996177 1.380963263 1.35901666 1.338909832 1.349872566 1.381969322 1.335278408 1.304658339 1.329614316 1.323595026 1.351489958 1.299223876 50982460 pmoa uncultured bacterium Carbon Cycling Methane Methane oxidation superkingdom:Bacteria; 0.928117134 0.933733271 0.927108685 0.919673788 0.891337807 0.883712186 0.917177422 0.930330462 0.926226045 0.963666308 0.922853629 0.945477206 0.870461637 0.889795702 0.872071522 0.882891898 0.925214709 0.924506308 219956344 tehb Anaeromyxobacter dehalogenans 2CP-1 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter;species:Anaeromyxobacter dehalogenans; 0.982248808 1.002603097 0.958496622 0.961357332 0.977101433 1.003963673 0.905290083 0.931433588 0.896450252 0.978078531 0.916716272 0.942034185 0.944069216 0.89847907 0.909925494 0.913636481 0.94642151 1.010308648 300789270 ara Amycolatopsis mediterranei U32 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 1.143000489 1.115027284 1.103883672 1.148284825 1.114751281 1.137827325 1.116082184 1.109056341 1.111749247 1.103389473 1.101004244 1.118402377 1.10926951 1.091649039 1.09489552 1.117678513 1.135862087 1.093087827 119899278 chrr Azoarcus sp. BH72 Metal Homeostasis Chromium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 1.189538537 1.191200307 1.157583852 1.189528109 1.208545452 1.154631765 1.167717859 1.184529163 1.168746368 1.156438009 1.148673854 1.161080448 1.150023573 1.101287361 1.145521035 1.10731832 1.159211947 1.186113369 149201941 GAPDH_Calvin Roseovarius sp. TM1035 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 0.955227116 1.075050494 0.977781559 0.930353215 0.889882496 0.976796393 0.905605629 0.92334806 0.995053212 0.969964067 0.911811237 0.92311452 0.909777132 0.898348848 0.865272483 0.904208205 0.979388175 1.013400573 384071524 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.190775666 1.179803394 1.182353621 1.203591995 1.165224908 1.199495319 1.173815399 1.156480199 1.165779947 1.164126535 1.230513231 1.211301482 1.155531658 1.152558476 1.195989118 1.187534099 1.190087175 1.175116933 169239582 terc Mycobacterium abscessus Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 1.027927926 1.035270016 0.992686814 1.001294878 0.96404724 0.988666785 0.949614087 1.009560292 1.002033043 1.006483209 0.945667439 1.002489208 0.962365576 0.973565177 0.877919562 0.939259538 1.011292404 1.03570086 371720261 amyA Caldithrix abyssi DSM 13497 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;genus:Caldithrix;species:Caldithrix abyssi; 0.847512469 0.815612981 0.816641098 0.836436562 0.820687651 219542477 amyA Chloroflexus aggregans DSM 9485 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aggregans; 0.948552535 0.857984133 0.929960016 0.902795208 0.907023251 0.915885869 0.925855377 0.894803948 0.924219269 0.934994205 0.933672663 0.965547634 0.915663613 0.975896597 0.921440296 0.906531082 0.901116394 0.898792631 219938983 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.028898587 0.968424417 0.997661204 1.013594452 1.012703246 0.976514988 1.035586712 1.018589247 0.999994461 0.991233348 1.04060591 1.012733369 0.975664185 0.950759461 0.971458723 0.969980223 0.970719203 0.981677955 83576658 FBPase Rhodospirillum rubrum ATCC 11170 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum rubrum; 1.043422966 1.024758821 1.015370334 1.046993121 1.048140289 1.068411676 1.058532331 0.985003154 1.020582495 1.020367031 1.012416106 1.034038958 1.023278789 0.986079758 0.984314599 1.028589384 1.045347644 1.0496088 28057818 acetylglucosaminidase Xylella fastidiosa Temecula1 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xylella;species:Xylella fastidiosa; 0.802944394 0.823599489 0.810422647 0.851218685 0.836869306 0.851244545 0.837548296 0.837688772 0.801250591 0.810875578 0.896546298 118504677 terc Pelobacter propionicus DSM 2379 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Pelobacteraceae;genus:Pelobacter;species:Pelobacter propionicus; 0.930381836 0.901959015 0.843625637 0.873587358 0.875442968 0.935952507 0.826369888 0.846648094 0.848496898 0.941616588 0.885571632 0.898487505 0.905223749 0.905674798 0.822472858 0.894828199 0.920209655 0.881631528 104304981 nirk uncultured denitrifying bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.315237777 1.295774103 1.300242334 1.269780461 1.296395102 1.329399011 1.315453275 1.230837069 1.273224146 1.303352368 1.306450644 1.290019697 1.301183754 1.300082071 1.275155616 1.306241386 1.262587417 1.283927633 340771943 fthfs Propionibacterium acnes SK182B-JCVI Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium;species:Propionibacterium acnes; 0.835013564 0.897468882 0.821367097 0.884667055 0.859887706 0.828730426 0.817745944 0.787035564 0.839668179 0.864477645 0.866730302 0.880397362 312878781 CsoS1_CcmK Aminomonas paucivorans DSM 12260 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Synergistetes;class:Synergistia;order:Synergistales;family:Synergistaceae;genus:Aminomonas;species:Aminomonas paucivorans; 0.828803629 0.83590573 0.872627012 0.863056592 0.800390093 0.807642057 0.859210884 0.832125624 0.848350001 0.908054979 0.913789119 0.81404157 0.812962142 0.818972786 0.819443842 177841042 amyA Opitutus terrae PB90-1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 1.05000306 0.980708375 1.097284813 1.019001548 0.946488029 0.995294547 0.954281673 1.001597082 1.051158842 1.01444816 0.993302123 1.022258394 0.978928231 0.988448058 0.954628357 0.947767014 0.964174973 1.040838669 33391397 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.870255268 0.836972993 0.873697159 0.910774454 0.806194926 0.855989424 0.913138629 0.892235628 0.888154518 0.891650225 0.847547159 0.885972079 0.825525452 0.874095511 0.787373385 0.838216909 0.870326456 0.909126063 339479848 amyA Bifidobacterium breve UCC2003 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium breve; 1.216141059 1.188134557 1.177490644 1.211263032 1.190588916 1.200747994 1.175830877 1.189537042 1.220697267 1.179302643 1.169023183 1.217707541 1.133276944 1.15340754 1.110784033 1.16303682 1.193275923 1.137293379 262198974 ccmL Haliangium ochraceum DSM 14365 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Kofleriaceae;genus:Haliangium;species:Haliangium ochraceum; 1.19774845 1.153333532 1.153855491 1.20812445 1.186584717 1.203468998 1.19760119 1.201832947 1.165160985 1.172373456 1.160479438 1.193123612 1.157335594 1.146278714 1.131125905 1.15368286 1.198423947 1.183878235 300311641 amyA Herbaspirillum seropedicae SmR1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herbaspirillum;species:Herbaspirillum seropedicae; 1.232490282 1.212235216 1.222309661 1.242723694 1.244498405 1.214715007 1.220259863 1.244713851 1.219555595 1.213688657 1.209007789 1.229771197 1.240502994 1.183351213 1.23823002 1.226804235 1.230558919 1.192365156 332182272 pme Treponema brennaborense DSM 12168 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema brennaborense; 1.015828078 0.982268296 1.012051754 0.98053491 1.027896656 1.120100731 1.036869686 0.977068902 0.970275332 1.086951686 1.063786505 1.024852859 1.044003533 1.076980865 0.961730852 1.063124452 0.992848113 1.03358161 320449373 fthfs Thermus scotoductus SA-01 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus;species:Thermus scotoductus; 0.937406173 0.971974103 0.956288344 1.029115035 0.974892864 0.92862129 0.978821546 0.945694887 0.934818791 0.944991797 0.92134339 0.974140132 0.946431583 0.954168079 0.881722297 0.894392619 0.947164472 0.896618913 115424239 gdh Bordetella avium 197N Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella avium; 0.938487184 0.921842668 0.913286565 0.990121049 0.933113316 0.921352873 0.922098222 0.862388853 0.94885247 0.839909007 0.925666412 0.816244208 0.851455251 0.870164417 0.866157601 0.969156 0.935698847 386001204 mcra Methanosaeta harundinacea 6Ac Carbon Cycling Methane Methanogenesis superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosaetaceae;genus:Methanosaeta;species:Methanosaeta harundinacea; 1.084184183 1.051152504 1.099745385 1.103516876 1.106932039 1.093611711 1.122443798 1.11031354 1.120721664 1.086860528 1.104042019 1.129123073 1.042664086 1.026455487 1.061949318 1.069697081 1.12866916 1.144927521 45386203 narg unidentified bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.175795155 1.157037745 1.163998185 1.180201783 1.143891611 1.199885155 1.156458455 1.12064864 1.149257531 1.155249631 1.148805961 1.165615667 1.14302013 1.134498733 1.147749086 1.151287103 1.180517901 1.160713524 171057825 atzb Leptothrix cholodnii SP-6 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Leptothrix;species:Leptothrix cholodnii; 0.967304488 0.999702914 0.941331199 0.979925289 0.956701203 0.980682535 0.979733952 0.957677989 0.9574322 0.925615932 0.956743182 0.960031957 0.947881268 0.95349533 0.936466963 0.971442935 0.974851428 0.952571221 302420833 phospholipase_A2_fungi Verticillium albo-atrum VaMs.102 Carbon Cycling Carbon degradation Phospholipids superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticillium;species:Verticillium alfalfae; 0.904673357 0.941459791 0.908500521 0.935744678 0.898509073 0.936438524 0.888945086 0.961244293 0.889471891 0.914718626 0.867134391 0.934603383 0.889464491 0.901170602 0.894657756 0.901373374 0.961785042 0.903964211 160917463 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.334196374 1.297809756 1.292780403 1.322491762 1.29770772 1.343924104 1.301334338 1.341359821 1.316151933 1.276015518 1.27397146 1.291078792 1.28235552 1.244940665 1.26097819 1.284122627 1.316555193 1.269758158 383829900 poba Saccharomonospora xinjiangensis XJ-54 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora xinjiangensis; 1.202775271 1.157410981 1.145465228 1.164285603 1.110690394 1.12224404 1.135647619 1.18123346 1.16660402 1.097702272 1.124802631 1.201632246 1.105285306 1.105292835 1.100632482 1.116738974 1.150202946 1.097016779 23305823 phenol_oxidase Panorbis viscosus Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Microascales;family:Halosphaeriaceae;genus:Panorbis; 1.091303853 1.089568222 1.036473562 1.085329582 1.062845926 1.095482103 1.071410468 1.071103978 1.006455271 1.05414382 1.010249927 1.07253042 0.960866802 1.017249053 0.94186583 0.982859999 1.072429396 1.110444476 85709563 B_lactamase_A Erythrobacter sp. NAP1 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter; 0.842127507 0.892968974 0.823122886 0.853733472 0.85167893 0.873453677 0.802993128 0.806665905 0.841256094 0.841316897 0.843240594 0.875205268 0.851197506 0.892690079 356877438 tktA Azospirillum brasilense Sp245 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum brasilense; 1.082974253 1.133695215 1.08881216 1.080984777 1.063277687 1.126651041 1.045081106 1.047395573 1.077726734 1.077072238 1.075567083 1.107327785 1.04729901 1.044720991 1.024740705 1.073615098 1.163148596 1.09383571 254383649 ben_bcla Streptomyces sp. Mg1 virulence NA NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 0.893301126 0.944885039 0.916691955 0.963399281 0.909406732 0.915309201 0.886488284 0.925913299 0.94364125 0.921894499 0.888831272 0.914426416 0.892406236 0.919192052 0.834680268 0.895462869 0.913404648 0.905315175 111148343 nirb Frankia alni ACN14a Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia;species:Frankia alni; 1.035610443 1.026810046 0.973459732 1.023327331 1.013648828 1.010250417 0.970203828 0.978984118 0.966304925 0.954855071 1.0090945 0.983833977 0.984457251 0.971855396 0.982462095 0.988247704 1.010341077 0.988174094 170690091 exaa(moxf) Burkholderia graminis C4D1M Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia graminis; 1.117317163 1.082520131 1.129570596 1.114761672 1.094622879 1.101541044 1.077095801 1.117157551 1.101148935 1.122409857 1.1196547 1.135779338 1.080515069 1.112434038 1.090120565 1.122239606 1.112271681 1.116743992 307941642 chitinase Roseibium sp. TrichSKD4 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseibium; 1.015540494 1.037742588 1.035141322 1.087275552 1.064073354 1.025903264 1.071117544 1.094185831 1.06147975 1.085471122 1.076569583 1.106666683 1.006886382 1.051295445 1.011850238 1.054944015 0.972680414 1.007879918 302459996 rgl Streptomyces himastatinicus ATCC 53653 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces himastatinicus; 1.410901717 1.376496401 1.347176158 1.390869476 1.353954096 1.392859902 1.348101858 1.363200275 1.352739031 1.339708785 1.352416507 1.36556657 1.344014026 1.347752785 1.329472279 1.356478754 1.394920305 1.349985463 400229803 thl Burkholderia multivorans CF2 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 0.981997202 0.977607001 0.96877153 0.993290043 0.944412912 0.979371968 0.974470392 0.958891352 0.988941368 0.995023691 0.961626605 0.980035244 0.928439215 0.949008099 0.894060433 0.930731901 0.987123321 0.942131351 86558241 FBPase Synechococcus sp. JA-2-3B'a(2-13) Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 0.955030281 0.955925563 0.916793938 0.979562947 0.972203764 0.938038727 1.012986764 0.98034 0.992107552 0.936312572 0.950474119 0.939235048 0.959089669 0.887360987 0.928204814 0.856939252 0.923082421 0.933560796 120556132 quinoline Marinobacter aquaeolei VT8 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter hydrocarbonoclasticus; 0.985989713 0.965724405 0.948735816 0.934059846 0.875931018 0.954990021 0.899669832 0.911029971 0.941358403 0.919953374 0.87611928 0.931120232 0.916314746 0.943718056 0.961033715 0.909197248 0.961656689 0.986236217 15807853 ppx Deinococcus radiodurans R1 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus radiodurans; 0.847872683 0.85322696 0.828470324 0.861112928 0.841751956 0.818698203 0.855229233 0.868017955 0.832241287 0.825863065 0.83547901 0.842460332 214031314 FBPase Ruegeria sp. R11 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 0.992537028 0.987985032 0.965217985 1.008683156 0.913096667 0.98187657 0.968763249 0.990472881 0.971037154 0.99180167 0.941491909 0.986423149 0.891892919 0.935274509 0.947034167 0.932031635 1.008135908 1.006201752 219850348 phn Chloroflexus aggregans DSM 9485 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aggregans; 1.138112553 1.137322666 1.111768348 1.125168359 1.08623928 1.121728057 1.081413309 1.100280424 1.095431349 1.129964438 1.110982586 1.084973718 1.112108862 1.082098193 1.043034192 1.112241189 1.090327375 1.120529858 119958728 chnb Mycobacterium vanbaalenii PYR-1 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 0.875531349 0.870455343 0.910635834 0.924414405 0.871147723 0.883003228 0.851100936 0.882827953 0.862256339 0.881594222 0.892752732 0.910190862 0.86131827 0.876766265 0.858256258 0.863231801 0.935980228 0.887723252 26278746 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.873187128 0.888532054 0.876876774 0.875619904 0.88502883 0.885678936 0.882951261 0.877041689 0.899476396 0.915982846 0.855007508 0.884697259 0.838495319 0.834991821 0.790027831 0.804986085 0.911164779 0.881690024 257478318 poba Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Alicyclobacillus;species:Alicyclobacillus acidocaldarius; 1.002654336 0.950657074 0.955438581 0.987037217 0.976048008 0.95955053 0.958025417 0.925290456 0.963533934 0.936024837 0.87960421 0.929412063 0.90309882 0.920752201 0.934970953 0.876331576 0.998907816 0.957352105 328880544 mdlc Streptomyces venezuelae ATCC 10712 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces venezuelae; 1.406864947 1.400728495 1.372358417 1.372219115 1.345836314 1.379473238 1.336935286 1.375901707 1.368742122 1.361738996 1.36711617 1.374317819 1.303435386 1.313794304 1.295043929 1.332134532 1.389566801 1.356643872 298515449 rgl Bacteroides sp. 3_1_23 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides; 0.92614765 0.90542424 1.005555345 0.959527812 0.963650235 0.990268253 0.943031764 0.952776771 0.95826479 0.962749057 1.048237645 0.927674584 0.923920111 0.910026466 0.973924733 0.918147885 1.015177487 0.95668106 380681878 cellobiase Phaeospirillum molischianum DSM 120 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Phaeospirillum;species:Phaeospirillum molischianum; 1.212896917 1.272312134 1.178112692 1.22342322 1.198841547 1.235143022 1.216479885 1.213774443 1.205770929 1.198069953 1.18815186 1.205063093 1.190556028 1.147790996 1.141938193 1.126552966 1.204555424 1.190574983 319785636 RgaE Pseudoxanthomonas suwonensis 11-1 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Pseudoxanthomonas;species:Pseudoxanthomonas suwonensis; 0.859730078 0.825079822 0.871606151 0.875384859 0.906479391 0.844120225 0.889269489 0.821824472 0.846164416 0.845756188 0.828926769 0.810285627 0.887489263 0.840680514 308067391 amyA Paenibacillus polymyxa E681 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus polymyxa; 1.291926543 1.194345774 1.210024517 1.216552152 1.131638087 1.156223818 1.135610587 1.151274105 1.146561014 1.18749636 1.18611595 1.186980701 1.134294699 1.113229153 1.083019484 1.131810537 1.1625391 1.160989736 76667345 nifh uncultured nitrogen-fixing bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 1.421424075 1.424323823 1.393411313 1.407256442 1.401358228 1.431358567 1.368510174 1.411261024 1.375271858 1.383039828 1.386341346 1.414908189 1.371507236 1.371011312 1.348705598 1.360676997 1.392009229 1.385437219 326207015 catechol_b Novosphingobium nitrogenifigens DSM 19370 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium nitrogenifigens; 0.953738703 0.941989091 0.918146528 0.941117925 0.853466075 0.934464178 0.859285951 0.890691632 0.915667384 0.900154993 0.906795864 0.92752874 0.891160286 0.932467478 0.859423463 0.924228489 0.938630108 0.899248885 345870832 nifh Thiorhodococcus drewsii AZ1 Nitrogen Nitrogen fixation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiorhodococcus;species:Thiorhodococcus drewsii; 0.860174001 0.894353516 0.868970367 0.898830208 0.841346122 0.861210511 0.872617542 0.877382319 0.852391625 0.8949561 0.852961308 0.862856088 0.810630211 0.871279504 0.929592602 343515219 chitinase Vibrio sp. N418 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 0.804621562 0.846529652 0.99601615 0.87556004 0.836995791 0.904372845 0.895609817 0.822423591 0.869729097 0.917531026 0.874753364 0.892651115 0.877382026 357417546 bphd Pseudoxanthomonas spadix BD-a59 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Pseudoxanthomonas;species:Pseudoxanthomonas spadix; 0.825667536 0.852705386 0.838582131 0.825867187 0.827716358 119371710 narg Dechloromonas denitrificans Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Dechloromonas; 1.023234781 1.103474111 1.009682801 1.039715714 1.10030841 1.095759777 1.076380194 1.017680911 1.036374623 1.077795231 1.045417113 1.048229134 1.067330025 1.03382861 1.022843933 1.077297277 1.034864104 1.064758651 334145441 nitrilase Novosphingobium sp. PP1Y Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 0.856109561 0.794457503 0.820999003 0.855136965 0.816199313 0.806425347 0.843183518 0.884368617 0.834780569 0.820366534 0.86343022 345013937 vgb Streptomyces violaceusniger Tu 4113 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces violaceusniger; 0.986694766 0.960800525 0.946788228 1.024099471 0.991307614 0.985386106 0.995719477 0.970487805 0.977006194 0.985240949 0.961840154 1.004165856 0.985884884 0.943399972 0.973028837 0.977413438 1.002949144 0.960145198 302490529 acetylglucosaminidase Desulfovibrio fructosovorans JJ Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio fructosovorans; 1.041171436 0.969285746 1.007121595 1.014508871 1.020732035 0.95227517 1.000706669 0.988234916 1.022109624 0.971085704 0.977351271 0.989785154 0.964934574 0.867139704 0.845253273 0.948333143 0.974813495 0.956880749 134094424 soxY Herminiimonas arsenicoxydans Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herminiimonas; 0.832335628 0.834971776 160346615 proO Burkholderia multivorans ATCC 17616 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 1.016671121 0.997302436 0.991807592 0.96393384 0.971660679 1.036408097 0.96416334 0.975561466 0.959399422 1.01863985 0.976069808 0.977231509 0.927414043 0.986582983 0.943730891 0.956696566 0.995754853 1.029027046 197330028 mdlc Streptomyces sp. Mg1 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 0.954415031 1.028452271 1.012889598 0.960274387 0.985886661 1.001048004 0.96340175 0.880615968 0.911431845 1.039274439 1.008027257 0.962636603 0.956745226 1.011713617 0.943584537 0.960975746 1.0285309 1.020905024 226834050 amyA Actinomyces urogenitalis DSM 15434 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces urogenitalis; 0.936538968 0.943497831 0.901301127 0.989461974 0.833568218 0.905526023 0.8652274 0.906972216 0.909186234 0.924074018 0.877998423 0.892811231 0.826008392 0.884174575 0.868381001 0.953643732 0.936948977 94554376 cellobiase Deinococcus geothermalis DSM 11300 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus geothermalis; 0.959332996 0.976074773 0.990321418 0.95458942 0.908557749 0.961083274 0.939541317 0.972968764 0.976664488 0.988925961 0.910113266 0.985621922 0.912230227 0.926297251 0.924302271 0.903702395 0.979435407 0.999801289 66766474 pme Xanthomonas campestris pv. campestris str. 8004 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas campestris; 0.897225392 0.887592706 0.912082378 0.901149022 0.92879544 0.881689338 0.891881937 0.892293773 0.911225209 0.894569433 0.933685951 0.902820633 0.858602458 0.854604268 0.822713762 0.821131456 0.890888519 0.914333353 307946961 tktA Roseibium sp. TrichSKD4 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseibium; 1.064499335 1.066471912 1.096411009 1.121597519 1.109567526 1.097689603 1.095540867 1.136576208 1.105023314 1.078620017 1.095210052 1.114618875 1.091472698 1.030067595 1.117289552 1.069131954 1.10568722 1.080170531 398083199 poba Variovorax sp. CF313 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax; 0.887647186 0.907775169 0.867993912 0.884526997 0.832475727 0.857533841 0.831279311 0.848511345 0.873961924 0.854386202 0.852504368 0.877654915 0.830311943 0.89237469 0.798968216 0.822183095 0.884324496 0.911518354 120403769 amyA Mycobacterium vanbaalenii PYR-1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 0.953348415 1.00540818 0.881912691 0.906971158 0.845075358 0.850289762 0.84953413 0.874195142 0.913497039 0.898107012 0.820545382 0.884810728 0.813801071 0.910969371 0.807581837 0.822102823 0.853220564 0.935189274 255922314 pectinase (pectate_lyase) Actinosynnema mirum DSM 43827 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Actinosynnema;species:Actinosynnema mirum; 0.948483177 0.936800489 0.924581901 0.931100391 0.912674518 0.980785018 0.86244288 0.856629148 0.865645131 0.957445955 0.914686933 0.902636465 0.907894546 0.954718044 0.918816278 0.885957747 0.964815267 0.939728285 322396317 FBP_aldolase Methylocystis sp. ATCC 49242 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylocystaceae;genus:Methylocystis; 0.903932081 0.823389966 0.870987987 0.836099572 0.86602203 0.854524626 0.895306417 0.868886283 0.84305761 0.848917368 0.799133748 0.871289168 0.906812668 344223873 frdA_rTCA endosymbiont of Riftia pachyptila (vent Ph05) Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;species:endosymbiont of Riftia pachyptila; 1.016849041 1.032228286 1.047764243 1.027057733 1.026746031 1.056237142 1.00991491 1.095876039 1.022217785 1.027152981 1.017712837 1.01604478 1.010707987 1.013693453 0.96830966 1.021001757 1.035306416 1.074286123 166865142 dsrB uncultured Desulfobacteraceae bacterium Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae; 1.173680784 1.153043974 1.155365942 1.178875877 1.171665001 1.184112082 1.171222463 1.173156537 1.175073936 1.14742943 1.131891297 1.170551873 1.138447422 1.136952724 1.182797852 1.167812921 1.178608934 1.130800323 379058323 amyA Serinicoccus profundi MCCC 1A05965 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Serinicoccus;species:Serinicoccus profundi; 0.926070904 0.870651189 0.915989395 0.936076609 0.870325593 0.857574796 0.923154282 0.879686701 0.869814955 0.855367573 0.863001709 0.84345487 0.89432811 0.852703078 0.78822198 0.818279712 0.877970704 0.832278591 359776521 amyA Arthrobacter globiformis NBRC 12137 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter globiformis; 1.056988566 1.025952929 1.034105544 1.0342666 1.04526648 1.043431293 1.049284686 1.058261565 1.03796864 1.009856038 1.008228039 1.024930232 1.000544841 0.984477793 0.963699993 1.003609344 1.014198155 1.016175383 306516843 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.918135645 0.937370502 0.915247173 0.910873307 0.872163883 0.943163718 0.897037915 0.920216568 0.894948095 0.919239686 0.92094717 0.904004353 0.877126115 0.883873779 0.857046585 0.902506661 0.896143026 0.9539802 325857347 amyA Prevotella denticola CRIS 18C-A Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella denticola; 0.920456161 0.918304093 0.891494274 0.895433857 0.880786384 0.915406132 0.917723178 0.846972187 0.935774107 0.92068042 0.981789178 0.902495654 0.892316128 0.943385158 0.869677407 0.872263487 0.917197677 0.913593634 66846469 tannase_Cdeg Aspergillus fumigatus Af293 Carbon Cycling Carbon degradation Tannins superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus fumigatus; 0.874837526 0.893066975 0.813576757 0.949711476 0.863648156 0.889216342 0.872841077 0.922842861 0.902999491 0.864325969 0.83475653 0.912079385 0.854273854 0.855286906 0.862044897 0.906246322 0.912496328 326414060 SoxC Polymorphum gilvum SL003B-26A1 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;species:Polymorphum gilvum; 1.032150638 1.057149488 1.032624207 1.026328744 1.030351091 1.019248708 1.016681881 0.997636261 0.990542833 1.02679888 1.044872401 1.038504544 1.033935473 1.024777455 0.987310647 1.044861462 1.001261233 1.027567425 224027838 aps_apra uncultured alpha proteobacterium Sulfur adenylylsulfate reductase NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 0.915827457 0.926867196 0.941031019 0.974883874 0.93294188 0.928450575 0.946692534 0.913208923 0.944913033 0.905780981 0.938709303 0.950280381 0.915699187 0.911074342 0.841910028 0.879531262 0.998079997 0.973143796 300310640 cbea Herbaspirillum seropedicae SmR1 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herbaspirillum;species:Herbaspirillum seropedicae; 1.027045305 1.029914554 1.016462655 1.00963422 1.043211465 1.060515634 1.013638106 1.007630568 1.234884392 1.025655446 1.031384589 1.028154177 1.066297843 1.043060156 1.011633505 1.022328147 1.048196478 1.026743004 56798381 catechol_b uncultured bacterium Organic Remediation Aromatics Other aromatics superkingdom:Bacteria; 1.12749088 1.118564293 1.052091695 1.125909009 1.058802959 1.091072548 1.039883338 1.071781622 1.089766018 1.063791856 1.066142622 1.087794504 1.044334477 1.043620433 0.986728158 1.050254445 1.088436789 1.091966931 77378785 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.050439516 1.08504242 1.009969952 1.10584193 1.083161073 1.064849614 1.124142336 1.070781892 1.030795564 1.038109028 1.044045501 1.102949 1.069453255 1.014482483 1.069891271 1.054872469 1.085797655 1.03254095 340778104 GAPDH_Calvin Acetobacter aceti NBRC 14818 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acetobacter;species:Acetobacter aceti; 0.812175532 0.840030862 0.846379351 0.835531852 0.807744606 0.848553983 0.812286507 0.802518794 0.809615047 0.785996875 0.854270529 0.863117534 296118533 catechol Corynebacterium ammoniagenes DSM 20306 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium ammoniagenes; 0.767977714 0.799638843 0.792746589 193089854 sucD Chloroherpeton thalassium ATCC 35110 Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chloroherpeton;species:Chloroherpeton thalassium; 0.870784483 0.825875219 0.794703236 0.812526017 0.792288895 0.800149124 0.827061793 359791858 TIM Mesorhizobium alhagi CCNWXJ12-2 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium alhagi; 1.168472083 1.160642605 1.176451945 1.140985142 1.168819771 1.176623373 1.172870269 1.171643036 1.13693775 1.154514124 1.159215881 1.163227881 1.106820615 1.089953461 1.071662918 1.133421614 1.196253001 1.17547535 325168944 arsc Acidiphilium multivorum AIU301 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acidiphilium;species:Acidiphilium multivorum; 0.873123715 0.891254137 0.854459327 0.867262615 0.783043815 0.872965298 0.846920351 0.892473017 0.860027683 0.801850314 0.805679572 0.804986304 0.857218501 90420090 alkk Aurantimonas manganoxydans SI85-9A1 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Aurantimonas;species:Aurantimonas manganoxydans; 0.929911928 0.976948542 0.979928499 0.960041075 0.993407376 1.010665194 1.006952485 0.998781572 0.978205296 1.019377013 1.003572338 0.959722993 0.927466265 0.939205205 0.904419714 0.974812928 0.986529355 1.000892401 311217961 bco Rhodomicrobium vannielii ATCC 17100 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Rhodomicrobium;species:Rhodomicrobium vannielii; 1.215904922 1.181215192 1.216897096 1.222996404 1.209769368 1.233752138 1.206449734 1.235632507 1.225131282 1.20359508 1.20859968 1.210331107 1.21865215 1.184219099 1.17041592 1.189309386 1.226376624 1.195153674 339512044 pme Salmonella bongori NCTC 12419 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella bongori; 0.862343792 0.838872615 0.840143674 0.817710388 0.797341899 0.825725944 0.898672957 371575638 arsc Corynebacterium pseudotuberculosis 3/99-5 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium pseudotuberculosis; 0.803926008 0.870162149 0.870567729 0.864586406 0.845307004 0.839394966 0.834419895 0.859020638 0.852624203 0.882832629 0.865567368 18478404 nitrate_reductase Monascus purpureus Nitrogen N Assimilation NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Elaphomycetaceae;genus:Monascus; 0.962271125 1.000717259 0.91549124 0.860026392 0.945430368 0.969032668 0.906057483 0.941196729 0.889962298 0.954198061 0.954872361 0.940087421 0.905422135 0.965711902 0.888665341 0.949927982 0.951802425 0.99109817 302466512 phytase Streptomyces viridochromogenes DSM 40736 Phosphorus Phytic acid hydrolysis NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces viridochromogenes; 1.173624122 1.14686418 1.126157493 1.137640084 1.120024187 1.167129276 1.109970204 1.117503506 1.128980642 1.143284233 1.103948368 1.112275928 1.113855454 1.117942152 1.085094352 1.139675849 1.147866872 1.154674565 88797163 FBPase Reinekea sp. MED297 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Reinekea;species:Reinekea blandensis; 0.855481921 0.83143858 0.869540521 0.852317992 0.868143342 0.794748479 0.877146808 0.847841275 0.840862853 0.807122397 0.857484234 0.868328378 358462142 amyA Frankia sp. CN3 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 1.012720992 0.993793365 1.010809007 0.962085536 1.018677202 1.029433067 1.017548023 1.038560267 0.97987394 1.013834431 1.00695806 0.99081067 0.971946802 0.960501976 0.908648534 0.89719923 1.011122006 0.976680756 126721509 cmci Roseobacter sp. SK209-2-6 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 0.8285022 0.876086561 0.832181167 0.836259987 0.87291795 0.858215723 0.808011387 0.847057013 0.830543147 0.864264981 0.850253198 0.820399648 0.833423402 0.89194977 46371007 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.220202733 1.178457969 1.191905926 1.178938639 1.151515394 1.1846708 1.12360441 1.136953126 1.193277103 1.177952638 1.161733514 1.152804159 1.124898522 1.148450212 1.106115845 1.126122973 1.195781421 1.185811168 238715140 xyla Yersinia bercovieri ATCC 43970 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia bercovieri; 1.124739981 1.145643721 1.125955258 1.149698428 1.093861041 1.125938019 1.103805569 1.141975654 1.143029117 1.132388311 1.119215829 1.142580362 1.082761698 1.103700489 1.106596458 1.097537173 1.137927393 1.114825348 254465792 FBPase Rhodobacterales bacterium Y4I Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 1.138519091 1.07142363 1.089337319 1.123252775 1.09414352 1.104157234 1.117713352 1.082951984 1.127288512 1.091777952 1.10989066 1.107348311 1.064597122 1.037554531 1.03672332 1.054216086 1.144555669 1.129007308 46578391 phenol_oxidase Trametes hirsuta Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Trametes; 0.937786625 0.956627786 0.879452728 0.912344189 0.907659661 0.929761901 0.856977816 0.844053045 0.932375314 0.908905406 0.90869532 0.893717499 0.871877849 0.902076988 0.847573942 0.834898139 0.914996234 0.976750795 28193601 hcab Ralstonia sp. SBUG 290 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 0.886417044 0.842924359 0.903125776 0.903853249 0.814336477 0.818982003 0.867267985 0.866682266 0.845390902 0.800596474 0.818588326 0.969066974 0.884738804 0.868070537 55378699 alkk Haloarcula marismortui ATCC 43049 Organic Remediation Others NA superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloarcula;species:Haloarcula marismortui; 0.975438246 0.983166634 0.940058 0.959108473 0.93214912 0.976824692 0.859665969 0.892852324 0.976030944 0.965197523 0.924439583 0.923051473 0.92056622 0.963949617 0.857583931 0.896146195 0.987159903 0.955040749 320012741 ara Streptomyces flavogriseus ATCC 33331 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces flavogriseus; 1.147647124 1.177358749 1.098053947 1.162270107 1.151522295 1.200593056 1.140917129 1.139898917 1.11515044 1.146857641 1.15609635 1.152404842 1.129481836 1.101064034 1.129183412 1.186797602 1.141826125 1.141616498 294638217 endoglucanase Edwardsiella tarda ATCC 23685 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Edwardsiella;species:Edwardsiella tarda; 0.819991624 0.842373364 0.874647486 0.874372957 0.843851255 0.803301833 0.830386475 0.829298827 0.878411462 0.865295794 0.834922798 55978139 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.851496871 0.878511451 0.873260809 0.900813704 0.822509143 0.872794809 0.848555624 0.875056848 0.871318839 0.853668889 0.836255456 0.849304823 0.878282179 0.826910327 0.891763086 0.838352641 23013508 FBPase Magnetospirillum magnetotacticum MS-1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum magnetotacticum; 1.017440352 0.996415105 1.068846822 1.010699431 1.024830829 1.025949826 0.997062257 1.042091458 0.999518688 1.001712047 1.041008173 1.032700641 1.019103253 0.978302095 1.001628287 0.997664881 1.036930213 1.027849996 261418952 amyA Geobacillus sp. Y412MC61 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 0.849444049 0.878120284 0.873196368 0.918697908 1.0466156 0.855316587 0.834596812 0.853742179 0.839267119 0.849967725 0.883535746 1.116601128 0.836986036 0.805378451 0.842179124 0.799454623 0.850654426 0.832163622 3219733 napa Rhodobacter sphaeroides f. sp. denitrificans Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 0.826696416 0.779804249 0.833093685 0.788883581 0.805962005 0.840678093 0.825759344 0.841439655 0.81858378 0.84282754 0.854906209 0.799957439 0.785026239 0.832544434 0.848336686 0.854168473 0.837993075 37925853 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.949985026 0.922370745 0.954820727 0.923765614 0.8951878 0.889162958 0.861831102 0.894569355 0.944624081 0.912551762 0.920606803 0.883035427 0.907863797 0.886680921 0.844339772 0.891722652 0.951757381 0.890586137 375145955 xylanase Niastella koreensis GR20-10 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;genus:Niastella;species:Niastella koreensis; 1.184022355 1.173486936 1.172716393 1.195489886 1.164549541 1.191103974 1.174699242 1.13083846 1.171412558 1.153667757 1.177656065 1.164193008 1.120972322 1.131467273 1.138547837 1.130152084 1.185212526 1.163003115 167624832 nrfa Shewanella halifaxensis HAW-EB4 Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella halifaxensis; 0.973634147 1.038856013 0.989322667 1.024875747 0.988993812 1.003238393 0.974498207 0.967480267 0.92725489 0.971934708 0.965801748 0.977612825 0.959441948 0.965711514 0.939565936 0.977345084 1.003925689 1.001615544 374569991 cysJ Alishewanella jeotgali KCTC 22429 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alishewanella;species:Alishewanella jeotgali; 0.925057847 0.941259944 0.932846927 0.949474618 0.931210722 0.952408458 0.935865371 0.963756856 0.922703552 0.883098749 0.931554907 0.910984699 0.871418582 0.848642964 0.828392009 0.868221592 0.925583524 0.960798555 145222379 chnb Mycobacterium gilvum PYR-GCK Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 1.139588243 1.178566386 1.145295808 1.127607944 1.128895985 1.153595038 1.095594058 1.100117478 1.130654064 1.124654345 1.148586706 1.137510044 1.134477655 1.109014218 1.07877883 1.108372158 1.178774937 1.152747621 239893855 gdh Perkinsus marinus ATCC 50983 Nitrogen Ammonification NA superkingdom:Eukaryota;order:Perkinsida;family:Perkinsidae;genus:Perkinsus;species:Perkinsus marinus; 0.766798396 0.813261324 0.846263368 0.830406989 0.80705592 0.824596984 357590671 pcpe Corynebacterium nuruki S6-4 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium nuruki; 0.89992851 0.904186739 0.849107803 0.944327091 0.884272331 0.841010928 0.810223945 0.850685784 0.906711257 0.832632945 0.833503851 0.808328841 0.929360489 0.879845963 300390362 fthfs uncultured bacterium Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria; 0.813059724 0.83890663 0.890364013 0.8844012 0.849960269 0.82666455 0.814213556 0.835024871 0.889005343 0.85234805 0.792104639 0.836871074 0.835395616 0.914040592 0.881638512 86555361 GAPDH_Calvin Synechococcus sp. JA-3-3Ab Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 0.767972669 0.869991507 0.81730919 0.820962763 0.80569231 13249529 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.889957478 0.968464908 0.981795582 0.948940888 1.020042514 0.934942787 0.968076681 0.884132582 0.929163982 0.958536025 1.045920906 0.965787145 0.997612067 0.818083761 0.93148722 1.029256738 288345679 poba Frankia sp. EUN1f Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 0.985972965 0.986607672 1.010474651 1.008291005 1.018620987 1.058347473 1.05200225 1.023992437 1.044623176 1.032611329 1.024791606 1.018534335 1.001136183 0.969395803 0.978561194 0.996317121 1.043419175 1.024110358 242222987 glx Postia placenta Mad-698-R Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Postia;species:Postia placenta; 0.989926751 0.989337308 0.966232892 0.975674989 0.962082789 0.936816267 0.976573044 0.987480359 0.976789269 0.976642924 0.959016513 0.972466727 0.934129764 0.908765663 0.920246309 0.917199545 0.995922615 0.974813838 53803124 rubisco Methylococcus capsulatus str. Bath Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylococcus;species:Methylococcus capsulatus; 0.933809999 0.85717003 0.829970638 0.817429567 0.807226452 0.841006456 0.827558624 0.8118945 0.848240636 110632280 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.880165399 0.937054979 0.878770988 0.941955318 0.928670073 0.938607141 0.935959542 0.889021298 0.896282211 0.922236161 0.924642345 0.899260129 0.910610942 0.836182333 0.819817263 0.863773326 0.943065011 0.91194041 291435683 endoglucanase Streptomyces ghanaensis ATCC 14672 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces ghanaensis; 0.934339389 0.931950194 0.857867266 0.913779987 0.864328971 0.854159565 0.900855408 0.891470011 0.921317968 0.910489211 0.88815382 0.905941712 0.847489924 0.847585191 0.829448411 0.87631936 0.928213252 345302720 nosz Rhodothermus marinus SG0.5JP17-172 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Bacteroidetes;order:Bacteroidetes Order II. Incertae sedis;family:Rhodothermaceae;genus:Rhodothermus;species:Rhodothermus marinus; 0.809096148 0.779405363 291197202 exoglucanase uncultured fungus Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi; 0.913178328 0.930158021 0.84017571 0.969369101 0.908756332 0.928060901 0.937007584 0.917138076 0.945570824 0.919802809 0.825282345 0.910757688 0.810125263 0.865469238 0.828791977 0.846074713 0.87251556 340526638 ara Amycolatopsis mediterranei S699 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 0.94749284 1.050119143 0.913789925 1.003294647 0.992335267 0.909914427 1.003081622 0.971185052 0.974074664 0.887966107 0.943000005 1.00448716 1.033275189 0.897112781 0.895717809 0.990896495 0.933744986 0.92454609 388547285 xyla Pseudomonas sp. M47T1 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 1.045582882 1.01827924 0.924325979 1.044082377 1.018525152 0.977890042 1.017908666 0.993180324 1.020691868 1.00498384 1.027872608 1.044085773 1.002016736 0.989392587 1.004442693 1.022535702 1.020341385 0.989193949 385665736 amyA Streptomyces tsukubaensis NRRL18488 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces tsukubaensis; 0.854655856 0.854910882 0.799772777 0.85847404 0.796329837 0.809919934 0.798068997 0.834663383 0.801805215 326950742 tfth Pseudonocardia dioxanivorans CB1190 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Pseudonocardia;species:Pseudonocardia dioxanivorans; 1.248224696 1.266346341 1.215494333 1.22653787 1.229608705 1.267988802 1.218737878 1.190093728 1.212845505 1.222240862 1.241446173 1.223280991 1.218541251 1.226318687 1.20414325 1.218547756 1.241396775 1.218740166 88784597 arsc Robiginitalea biformata HTCC2501 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Robiginitalea;species:Robiginitalea biformata; 0.885647524 0.802470922 0.804230158 0.826608974 0.828181646 0.846800847 0.820675299 0.802424439 0.785691114 0.859882188 0.85559477 82618383 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.851480695 0.858287304 0.877366069 0.831803161 0.811208078 0.845781915 0.843043832 0.841386426 0.863505875 0.890378095 0.860741431 0.861042131 0.788425635 0.855671198 0.80695092 0.813641744 0.863297678 0.891872511 302544095 alkk Streptomyces hygroscopicus ATCC 53653 Organic Remediation Others NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces himastatinicus; 0.896313413 0.854569896 0.859877447 0.852262402 0.845537052 0.78719308 0.839615873 0.850350818 0.874028086 0.844017458 0.82679629 0.815360262 0.836193426 0.856682594 294884109 aoxb bacterium enrichment culture clone aoxheteroA24_4W Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 0.937980985 0.975356824 0.887143653 0.982126787 0.947262703 1.042978357 0.899599342 0.946467246 0.877853924 0.979238387 0.949695215 0.948769927 0.963403655 0.92185035 0.957794986 0.923267269 0.961825253 0.988033991 166368281 CsoS1_CcmK Microcystis aeruginosa NIES-843 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Microcystis;species:Microcystis aeruginosa; 1.317171727 1.28666578 1.281927523 1.262397493 1.287416536 1.337533974 1.25443304 1.242027802 1.25923375 1.285481789 1.293669962 1.264706938 1.280367401 1.296923247 1.268632968 1.249974253 1.303287705 1.289574573 356642533 dsrB Pyrobaculum sp. 1860 Sulfur sulfite reduction NA superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum; 0.916080898 0.892729064 0.918349353 0.926996003 0.947925733 0.930332843 0.936939226 0.945433591 0.940402054 0.927807876 0.951050015 0.929959941 0.843549508 0.820053727 0.85506813 0.878119748 0.950625299 0.928679011 182440090 urec Streptomyces griseus subsp. griseus NBRC 13350 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseus; 1.073415062 1.074409123 1.071596869 1.06091901 1.054338856 1.069691879 1.053897217 1.056159884 1.053161737 1.081754113 1.071549185 1.076004404 1.026195702 1.042010462 0.995738278 1.045357682 1.0879328 1.111606464 55978109 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.001340307 0.983863582 0.997612721 0.947175517 0.94614404 0.917383004 0.942914037 0.910480447 0.980807877 0.969350429 0.935252675 0.936581783 0.912782633 0.859259094 0.958908235 0.893120693 0.977386421 1.009289231 345014868 alginase Streptomyces violaceusniger Tu 4113 Carbon Cycling Carbon degradation Alginate superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces violaceusniger; 1.0470933 1.088272897 1.025635608 1.040958217 0.977062825 1.001242398 0.969386525 0.997604684 1.029300194 0.998330464 1.001374426 1.008276416 0.97111691 0.992231354 0.963228341 0.990258103 1.029298619 1.027661798 115525806 poba Rhodopseudomonas palustris BisA53 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 0.928818056 0.941670661 0.868970367 0.928180554 0.837882358 0.920406387 0.883598739 0.863110376 0.924471084 0.932125837 0.836010586 0.873783482 0.869196178 0.890032352 0.854900821 0.914246983 0.940644884 158315918 pcpb Frankia sp. EAN1pec Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 1.017287449 1.027208848 0.983327899 0.99888229 0.987684929 0.979234123 0.969166995 0.992088263 0.985908744 0.953038398 1.022935574 0.955236275 0.918181913 0.911231699 0.844652633 0.915233884 1.001655121 1.035600643 75993801 arra uncultured bacterium Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 0.837318804 0.955885716 0.881259489 0.828487132 0.918704254 0.933180066 0.867750894 0.882114009 0.805051844 0.942948781 0.820657765 0.943049618 0.860801543 0.850444544 0.86446097 0.854951893 0.860287054 0.883193443 158423982 PRI Azorhizobium caulinodans ORS 571 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Azorhizobium;species:Azorhizobium caulinodans; 1.482091181 1.463399735 1.450851376 1.4632955 1.445440041 1.473533496 1.430911396 1.455781002 1.442226542 1.42586439 1.445676283 1.46672206 1.422764774 1.405018314 1.413876855 1.420373006 1.462831006 1.429373693 218564158 phenol_oxidase uncultured fungus Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi; 0.945856757 0.941237316 0.899083046 0.961374325 0.879030131 0.903503787 0.886456114 0.91110077 0.933247147 0.923154787 0.953139264 0.915081802 0.883457814 0.929971196 0.884106446 0.893167974 0.945731795 0.929913535 88706828 GAPDH_Calvin Congregibacter litoralis KT71 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Congregibacter;species:Congregibacter litoralis; 1.054840141 0.98761753 1.027620762 1.116545298 1.081510054 1.08046339 1.048215604 1.003508306 1.046178482 1.032791821 1.167030255 1.035185946 0.989411887 1.004238295 0.995726104 0.9974849 1.040905799 1.026640409 154183467 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.814948367 0.795385756 0.819814656 0.824229724 0.80056569 0.903061626 0.837088995 0.861006252 0.819219538 0.844108276 38674622 onr Enterobacter cloacae Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 1.014442484 1.041308103 0.992568597 1.032429877 1.009022911 1.078857812 0.977677078 0.96627973 1.027612537 1.021728237 1.007709671 1.016912898 0.970092366 1.0281775 0.960217719 0.980569212 1.009010604 1.000750984 154657 rubisco Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus; 0.989294979 0.966667531 0.941962697 0.961498295 0.971550221 0.9571414 0.909443834 0.908406037 0.942225793 0.912579051 0.920343435 0.922740822 0.952516675 0.904340152 0.91491557 0.935326895 0.979718369 0.944435606 13249559 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.789540507 0.815858449 0.840297981 0.794988544 0.79951875 0.816951505 56809499 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.895041549 0.859117258 0.949811533 0.902324835 0.847773976 0.849074662 0.856341998 0.908408054 0.923839343 0.872637077 0.853011693 0.885756423 0.875557522 0.85673676 0.854135863 0.840391944 0.919785838 0.867573965 222080136 amyA Agrobacterium vitis S4 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium vitis; 0.76620161 0.803375069 219993762 cda Halothermothrix orenii H 168 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Halanaerobiales;family:Halanaerobiaceae;genus:Halothermothrix;species:Halothermothrix orenii; 0.900439755 0.914584079 0.924270213 0.890956239 0.858655446 0.837352284 0.856327315 0.915904549 0.932782783 0.967569874 0.893291245 0.969496023 0.866475594 0.959366763 0.881355725 0.835882082 0.936012653 0.943599515 297203180 amyA Streptomyces sviceus ATCC 29083 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 0.884772854 0.850534852 0.863718457 0.87585225 0.880573395 0.891457302 0.907021788 0.936288505 0.866230426 0.86736798 0.795157091 0.845198018 0.870995736 0.899719813 83814744 linb Salinibacter ruber DSM 13855 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Rhodothermaceae;genus:Salinibacter;species:Salinibacter ruber; 1.188348409 1.193545611 1.135216076 1.187582169 1.148378678 1.16208847 1.16065132 1.174305713 1.168964908 1.172690057 1.147528942 1.148760656 1.117471514 1.134693709 1.075594311 1.149132733 1.180147751 1.167526695 296314093 ppx Neisseria polysaccharea ATCC 43768 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria polysaccharea; 1.057869807 1.049198718 1.019871404 1.140103149 1.020548898 1.109838346 1.044123653 1.070171344 1.034224703 1.004306444 0.991805947 1.017561775 1.020143192 1.034637981 0.994820174 1.027087601 1.063664486 1.040067165 339612459 RgaE Prevotella dentalis DSM 3688 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella dentalis; 0.873614098 0.854336592 0.876969346 0.812090431 0.843607525 0.862075757 0.825379847 0.817450547 0.86966879 0.846332468 0.851297507 169762163 sdsa Pseudomonas putida W619 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 0.977699579 0.957175615 0.954513162 0.992929665 0.942002535 1.005035352 0.963998938 0.950487986 0.993464966 0.981237469 0.964740159 0.964616451 0.910970975 0.877845686 0.88537381 0.918424298 1.011408545 0.963705738 282951654 chitinase Citrobacter rodentium ICC168 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter rodentium; 0.827379064 0.801089082 0.780321858 0.800002682 0.79682611 94423396 arsc Sphingomonas sp. SKA58 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 0.965576074 1.002723357 0.922434237 1.005109479 0.93328194 0.968808792 0.93170394 0.965769076 0.962455149 0.972356923 0.931353182 0.936226388 0.936093858 0.935978732 0.91180955 0.899984271 0.978629292 0.969456105 384040815 aoxb uncultured bacterium Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 1.160658858 1.150818959 1.137835321 1.145651657 1.157795291 1.154750375 1.136454913 1.114459722 1.13286968 1.134860866 1.133319296 1.12994029 1.169464634 1.132274381 1.11630512 1.147287216 1.150756653 1.140170109 338822056 cellobiase Agrobacterium tumefaciens F2 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 0.858707693 0.832410557 0.877243949 0.81296513 0.867671497 0.850262981 0.862644634 0.89018604 0.861813897 78093580 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.811839457 0.797712544 0.858023384 0.84268988 0.863080248 0.815671269 0.885507769 0.847764218 0.837254749 0.818927056 0.834121685 0.829897087 0.837754776 0.818136265 134102743 glucoamylase Saccharopolyspora erythraea NRRL 2338 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 0.810503441 0.89034234 0.793916159 0.828540735 0.806704356 0.783217843 0.799672743 0.854165928 121718263 endochitinase Aspergillus clavatus NRRL 1 Carbon Cycling Carbon degradation Chitin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 0.888107856 0.884017678 0.850604018 0.881619542 0.81515445 0.865955807 0.877430911 0.83040621 0.832193047 0.836760453 0.8194696 0.829313518 0.882511257 0.8701522 384078378 cysJ Stenotrophomonas maltophilia D457 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 0.786824137 0.941676186 119378072 phn Paracoccus denitrificans PD1222 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 1.216509086 1.235550055 1.278105427 1.263599224 1.228794229 1.255058303 1.233929108 1.237096569 1.262948498 1.274312338 1.28244224 1.272453108 1.192762084 1.215127725 1.202128835 1.235737355 1.235022552 1.225462749 388063662 amyA Gardnerella vaginalis 00703C2mash Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Gardnerella;species:Gardnerella vaginalis; 0.935479407 0.917057562 0.949021859 0.898835563 0.819593564 0.858633317 0.809126418 0.864932597 0.922206382 0.87205258 0.896683356 0.845557644 0.887731619 0.856495823 0.931911423 0.903722249 398228380 ben_bcla Bradyrhizobium sp. YR681 virulence NA NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 1.172980542 1.141811486 1.125129427 1.167484895 1.140834103 1.142661784 1.112651033 1.136100736 1.159163619 1.13937075 1.108415764 1.152002463 1.113379694 1.092242402 1.081570233 1.106582 1.146427982 1.141606243 66474891 cmua uncultured bacterium Organic Remediation Chlorinated solvents NA superkingdom:Bacteria; 1.326089028 1.3349747 1.293012142 1.328842673 1.320407626 1.3350306 1.292820026 1.324307133 1.277628419 1.301875849 1.301985878 1.310703932 1.287923085 1.292604433 1.299443066 1.285764898 1.288455869 1.303429992 229610703 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.862188253 0.856949561 0.864063858 0.874418596 0.850103439 0.854604185 0.850972499 0.869025783 0.843332147 0.85536678 0.847393449 0.886452071 0.862941726 0.8308104 164455736 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 0.787572934 0.784843137 254509886 rd Rhodobacteraceae bacterium KLH11 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 0.825415619 0.843583708 0.897146712 0.854991219 0.857308946 0.845147473 0.866916588 0.824559078 23393001 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.849909725 0.863883118 0.85733686 0.846890469 0.784418096 0.798913277 0.827123173 0.838505261 0.843761165 0.821911666 0.821241326 0.871575011 0.825110742 0.882841742 319749857 amyA Isosphaera pallida ATCC 43644 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Isosphaera;species:Isosphaera pallida; 1.087295019 1.100261565 1.094548938 1.140514198 1.098521916 1.13741302 1.070025303 1.082251777 1.090925288 1.083327006 1.057974164 1.070132741 1.080070271 1.066186449 1.016327212 1.07760455 1.131245194 1.08158906 374367139 SoxC Cupriavidus basilensis OR16 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus basilensis; 0.960717858 0.972761083 0.936523113 0.946394544 0.942009424 0.936714755 0.926500132 0.912847587 0.94705554 0.921269146 0.923653922 0.918143398 0.930163339 0.898354906 0.917491515 0.884015205 0.968669352 0.938379658 269838975 cellobiase Thermobaculum terrenum ATCC BAA-798 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;genus:Thermobaculum;species:Thermobaculum terrenum; 0.957240667 1.033003598 0.966781831 0.989171616 0.972463907 0.982512135 0.968419753 0.961193326 0.953440012 0.899858125 0.987348974 0.950344793 0.869548885 0.926753445 0.866792454 0.908388361 0.927348814 0.970775986 337260760 terc Myxococcus fulvus HW-1 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus fulvus; 0.783282248 0.830677426 145352813 Sir Ostreococcus lucimarinus CCE9901 Sulfur sulfite reduction NA NA 0.752877162 0.806455079 163735387 vana Roseobacter litoralis Och 149 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter litoralis; 0.767733734 0.815354088 119026048 mannanase Bifidobacterium adolescentis ATCC 15703 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium adolescentis; 0.896958898 0.812857669 0.866116601 0.849376585 0.817486896 0.816443691 0.826549801 0.861502979 0.839969093 60417318 nifh uncultured nitrogen-fixing bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.75523294 0.789399047 60476298 dsrB uncultured bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.18887618 1.178039406 1.206345066 1.340422354 1.176284856 1.182263077 1.170034201 1.221453033 1.177903008 1.140295068 1.144230249 1.212478255 1.174669661 1.134710022 1.17159552 1.150605462 1.19063992 1.14067438 119373686 catb Paracoccus denitrificans PD1222 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 0.840719022 0.822135675 0.81746238 0.867897573 0.819436551 0.801379316 0.797526011 0.813653069 238720458 ccmL Yersinia mollaretii ATCC 43969 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia mollaretii; 1.215663609 1.180955383 1.216875035 1.220745349 1.173866895 1.177954221 1.182743245 1.209422255 1.210863283 1.219764987 1.219174601 1.26138992 1.158559257 1.173979735 1.162082196 1.176992635 1.182467956 1.168217601 345012504 mdlc Streptomyces violaceusniger Tu 4113 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces violaceusniger; 0.913396203 0.955553316 0.970484875 0.939765012 0.924774118 0.951051281 0.917701165 0.87617786 0.905919021 0.942127667 0.889246577 0.945654541 0.899305008 0.891205996 0.853766141 0.924323167 0.9226035 0.944909525 357394269 vana Kitasatospora setae KM-6054 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Kitasatospora;species:Kitasatospora setae; 1.137402982 1.159079654 1.114299869 1.116730202 1.129028624 1.138455037 1.089054083 1.136386538 1.097704958 1.080821053 1.123429485 1.12442802 1.098533489 1.11607672 1.113140919 1.09655731 1.15138559 1.134796426 74038440 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.949456596 0.874676553 0.850229417 0.912237587 0.823710025 0.808132384 0.923684085 0.820237131 0.861637721 0.876749206 0.902267709 0.868250189 295827405 amyA Streptomyces sp. SPB74 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 1.2812274 1.283874433 1.249959598 1.264960573 1.251115702 1.300826562 1.267803196 1.280726099 1.243479532 1.251831414 1.275204964 1.26382881 1.260556961 1.259032714 1.226984498 1.265595058 1.258119588 1.258235479 4895143 endochitinase Streptomyces lavendulae Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 0.877891034 0.916995238 0.932740417 0.945973604 0.862273398 0.89188597 0.867857235 0.901358982 0.909000752 0.902197449 0.906222683 0.856896225 0.87900078 0.888402159 0.881803057 196221773 amyA Chthoniobacter flavus Ellin428 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Verrucomicrobia;class:Spartobacteria;genus:Chthoniobacter;species:Chthoniobacter flavus; 1.123625538 1.125477126 1.030057074 1.032992544 1.019218778 1.062658108 0.980096471 0.993310366 1.069377675 1.084120317 1.070699812 1.074765867 1.037024989 1.065406284 0.989240265 1.012560397 1.068148489 1.101311329 335878882 acetylglucosaminidase Rheinheimera sp. A13L Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Rheinheimera; 0.877593042 0.82629043 0.825895685 0.857345077 0.856850944 0.842067257 0.812304501 0.835326633 0.805263963 0.845999579 0.85692346 169599619 rgl Phaeosphaeria nodorum SN15 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Phaeosphaeriaceae;genus:Parastagonospora;species:Parastagonospora nodorum; 0.812018022 0.779920981 162283252 nitrilase Hoeflea phototrophica DFL-43 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Hoeflea;species:Hoeflea phototrophica; 1.039085341 0.961423501 0.930601602 0.938158838 0.970648539 0.889342925 0.882549873 1.015101142 1.013594039 0.936756653 0.868591211 0.988786999 0.904373079 0.888360831 0.897689322 0.901538233 0.951989627 0.944756943 83026038 alkb uncultured bacterium Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria; 0.941857122 0.941504521 0.886526748 0.961660615 0.885153349 0.914670418 0.901883633 0.908013575 0.989858445 0.934447554 0.924918083 0.900880467 0.861725079 0.870922452 0.857215065 0.908808211 0.990243996 0.952121828 371948029 xylanase Prevotella maculosa OT 289 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella maculosa; 0.88591801 0.843764075 0.922903044 0.863221592 0.815997632 0.826928212 0.873884607 0.829173995 0.864551103 0.840312685 0.911330149 0.816253614 219848482 sdhA Chloroflexus aggregans DSM 9485 Carbon Cycling Carbon fixation 3-hydroxypropionate bicycle superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aggregans; 0.906735151 0.941010848 0.906025094 0.912021643 0.978366851 0.921881547 0.906304122 0.860724145 0.904791905 0.916294961 0.960178075 0.890560449 0.914205606 0.913425071 0.935055926 0.892230475 0.890930076 0.913626347 148273114 arylest Clavibacter michiganensis subsp. michiganensis NCPPB 382 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Clavibacter;species:Clavibacter michiganensis; 1.032898739 0.949589667 0.967696857 0.965120479 0.973909524 1.00676696 0.957041422 0.97615289 0.977587369 0.991536942 0.98342163 1.100200292 0.96775493 0.969411351 1.043219145 0.886385395 0.990317878 340360549 amyA Actinomyces sp. oral taxon 448 str. F0400 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 448; 1.655003123 1.594516823 1.59299864 1.60845206 1.564496876 1.630812707 1.585373056 1.615012876 1.586898253 1.564623511 1.578365945 1.583154734 1.573625833 1.526374069 1.554869745 1.563430311 1.632699233 1.555130081 295432806 cysJ Caulobacter segnis ATCC 21756 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter segnis; 0.852267401 0.820392873 0.814702699 0.826519681 0.855520597 0.813307945 0.865255108 0.836498578 0.861045197 0.868244227 0.840067486 0.871885484 0.782603886 0.816391178 0.838838189 0.870616876 338234077 arsc Bradyrhizobiaceae bacterium SG-6C Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae; 0.812051068 0.781652986 0.830684768 0.887511399 0.789477707 0.799022413 0.854468578 0.809145193 0.836700598 0.823790125 93354702 tfth Ralstonia metallidurans CH34 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 1.011048478 1.017717078 0.997957427 0.996439065 0.938017879 0.98750295 0.94581483 0.985311159 0.983627447 0.963511418 0.924626288 0.968221418 0.896115616 0.902658921 0.877124482 0.92924448 1.006209522 1.018726167 358639846 exaa(moxf) Azoarcus sp. KH32C Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 1.244921763 1.202481222 1.222129464 1.25364005 1.224801706 1.237181393 1.232796735 1.215817577 1.232507971 1.207286582 1.219348535 1.218197935 1.213925152 1.143514836 1.173412545 1.182040818 1.258479719 1.19477265 115520664 tktA Rhodopseudomonas palustris BisA53 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 0.878077089 0.867833783 0.82726965 0.870834053 0.844248052 0.855391107 0.888890253 0.858130836 0.837057173 0.855448658 0.848118707 0.905131069 255920367 ara Actinosynnema mirum DSM 43827 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinosynnemataceae;genus:Actinosynnema;species:Actinosynnema mirum; 1.120650883 1.116444195 1.140169631 1.142451263 1.123645014 1.137701746 1.137750681 1.144756516 1.132456268 1.137630777 1.145631076 1.171613703 1.091562395 1.106031577 1.106857792 1.102305739 1.100775447 1.082059381 117984482 one_ring_12diox Burkholderia phymatum STM815 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 1.03657278 1.020328498 0.967248905 1.026909681 0.960019512 0.994360178 0.954274852 0.990953397 1.019023251 0.9926367 0.956005539 0.985424686 0.946724842 0.971558585 0.892312986 0.989486798 0.99730515 1.017111568 257221921 hzo uncultured planctomycete Nitrogen Anammox NA superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales; 1.069486819 0.985221854 1.050704672 1.108556802 1.142533029 1.018654429 1.117045897 1.09691776 1.05427364 1.061018625 1.066965559 1.09555109 1.053869056 1.031485437 1.061105729 1.075858045 1.065453914 1.007624901 305659029 amyA Corynebacterium matruchotii ATCC 14266 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium matruchotii; 1.1317858 1.081882424 1.077990103 1.119929985 1.096628146 1.094281059 1.081530875 1.107177085 1.102434421 1.100952078 1.096012728 1.147565054 1.09940742 1.095376285 1.104790291 1.12330407 1.114921682 1.079174986 407995231 poba Pseudomonas syringae pv. avellanae str. ISPaVe037 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae; 0.963675738 0.979028728 0.945170163 0.967993211 0.93948413 0.966146582 0.928827719 0.945446445 0.926046089 0.958475384 0.96338584 0.935893495 0.931479614 0.943022591 0.906107674 0.948136218 0.968958621 0.972999382 214036822 tfda marine gamma proteobacterium HTCC2148 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 0.920241238 0.860913909 0.867305231 0.945334196 0.842166721 0.838948402 0.864815656 0.934218862 0.973767089 0.931984949 0.982641145 0.92300646 0.905023312 0.866074683 0.918491352 0.886645503 0.902848763 390946596 acetylglucosaminidase Alistipes finegoldii DSM 17242 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Rikenellaceae;genus:Alistipes;species:Alistipes finegoldii; 0.872653476 0.889173985 0.894047967 0.877645619 0.903870195 0.953354118 0.873065768 0.896056818 0.926321294 0.934234695 0.909800788 0.8772485 0.899561914 0.929293653 0.918383183 0.857800634 0.929717225 0.921812364 359822858 cysJ Mycobacterium rhodesiae NBB3 Sulfur Reduction NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 0.802267082 0.82767389 0.812287653 0.825407981 0.792690444 0.782055054 0.85721265 3127131 actin_Viridiplantae Scherffelia dubia Other Phylogenetic NA superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Prasinophyceae;order:Chlorodendrales;family:Chlorodendraceae;genus:Scherffelia; 1.035649162 1.038050062 0.992887192 1.02955217 1.085539571 1.078645945 1.117123787 0.983799249 0.997446235 1.0744435 0.996557575 1.048314195 1.038502032 1.002704633 0.915382918 1.09671215 1.031810817 1.057649285 91692446 arsc Burkholderia xenovorans LB400 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 0.793328005 0.83296527 0.846568836 0.815167289 0.819393363 0.842851056 0.810048113 0.906304947 381198833 catechol_b Sphingobium yanoikuyae XLDN2-5 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium;species:Sphingobium yanoikuyae; 1.03937234 1.078946061 1.025962629 1.035777305 1.002053347 1.039099367 1.024104144 1.021342612 1.024108237 1.052771879 0.984661298 1.009514514 1.003348085 1.019436695 0.967509899 0.990334368 1.046965502 1.078317778 157804871 APS_AprB Thiobacillus plumbophilus Sulfur adenylylsulfate reductase NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus; 1.099632521 1.142217579 1.134957095 1.114871032 1.138810603 1.158004082 1.125790852 1.114411262 1.097665626 1.104359702 1.114732725 1.097351835 1.097168423 1.087040068 1.082283165 1.080476333 1.120637899 1.111309044 91686229 cyma Burkholderia xenovorans LB400 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 0.81969804 0.81518447 345878422 SoxB endosymbiont of Riftia pachyptila (vent Ph05) Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;species:endosymbiont of Riftia pachyptila; 1.264497061 1.225539396 1.228976649 1.235549004 1.210008173 1.247759809 1.211971671 1.218583424 1.227349651 1.248317059 1.218886541 1.236685251 1.206893656 1.183255789 1.20396548 1.22409967 1.268174026 1.245629832 386849850 mannanase Actinoplanes sp. SE50/110 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes; 1.11743945 1.091293527 1.077770784 1.093753328 1.068175737 1.070640285 1.067156845 1.051671871 1.106263873 1.065176776 1.066091726 1.078781208 1.048183641 1.054319297 1.014709663 1.061008454 1.097041593 1.05601321 212533495 cellobiase Penicillium marneffei ATCC 18224 Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 0.886602703 0.889856243 0.888004698 0.85790246 0.829393017 0.843981498 0.806778705 0.856336776 0.900318312 0.864299087 0.891459472 0.860273714 0.827959444 0.846016394 0.809674241 0.82626027 0.92726523 238836756 xylanase Sphingobacterium sp. TN19 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Sphingobacterium; 0.956465746 0.861503293 0.94677482 0.977974319 0.885580208 0.878371906 0.933796328 0.948934823 0.970436794 0.954758475 0.95839357 0.966075617 0.854616756 0.868229865 0.820106921 0.892600676 0.951305659 0.911385516 330836242 fthfs Spirochaeta coccoides DSM 17374 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Sphaerochaeta;species:Sphaerochaeta coccoides; 0.785487179 0.805454864 163854562 cmci Bordetella petrii DSM 12804 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella petrii; 1.129961162 1.098298634 1.120094362 1.149177217 1.075068937 1.114717186 1.071039346 1.108052857 1.11372856 1.092026073 1.099358614 1.1325643 1.10427642 1.093577674 1.060164511 1.111387099 1.131805534 1.095422662 206594311 ppk Ralstonia solanacearum IPO1609 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 1.414410789 1.404295763 1.383385457 1.379404352 1.374030604 1.428917004 1.368233221 1.376548859 1.372463847 1.389223765 1.389572743 1.383478192 1.344938646 1.355612201 1.332031671 1.376842692 1.413106653 1.393867008 347589363 terc Micavibrio aeruginosavorus ARL-13 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;genus:Micavibrio;species:Micavibrio aeruginosavorus; 0.760254236 0.833790963 384083608 proO gamma proteobacterium HIMB30 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 0.900739952 0.926823007 0.862330198 0.960184699 0.83881148 0.89056803 0.872377063 0.894847709 0.887516822 0.882378664 0.857526443 0.911951655 0.829404922 0.84472494 0.832792881 0.917449077 327311639 amyA Thermoproteus uzoniensis 768-20 Carbon Cycling Carbon degradation Starch superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Thermoproteus;species:Thermoproteus uzoniensis; 0.992521017 0.987248007 0.949795705 0.985689356 0.949519436 0.954148112 0.948473034 0.96596328 1.004713001 0.967820859 0.948158188 0.938005386 0.863290438 0.994332913 0.820851957 0.895424459 0.983729083 1.028178463 421953192 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.196309056 1.168102744 1.19410411 1.175281332 1.122695326 1.188478251 1.106877845 1.110406187 1.153830124 1.177432916 1.171520901 1.157378204 1.135022809 1.161096008 1.163526985 1.149262295 1.176887491 1.167836191 261857027 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.030746528 1.023149864 0.993710875 1.032183744 0.958730676 1.012718757 1.007041699 0.994236398 0.993390129 1.013759962 0.969134923 1.019749544 0.973639602 0.95635847 0.932872443 0.980650083 1.041172034 1.046776015 340557262 SoxA Acidithiobacillus caldus SM-1 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus caldus; 0.789746718 0.897710958 0.828849442 0.804509228 0.831044835 0.855457236 0.97523906 0.857232531 0.801761361 0.789230271 0.80299501 0.755538768 0.870410497 149783097 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.182260829 1.165632522 1.125608061 1.249468972 1.103166246 1.206507052 1.067241844 1.168030699 1.158315848 1.165652583 1.092646044 1.179365842 1.084776727 1.116995172 1.093921996 1.135763057 1.205945784 1.1658884 261857007 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.142151018 1.118338258 1.115173515 1.115311015 1.101707724 1.12548548 1.104135656 1.122642865 1.115969084 1.140842734 1.093997471 1.142159015 1.078653968 1.09631356 1.048554212 1.104715087 1.109369738 1.109501386 378733376 nagg Exophiala dermatitidis NIH/UT8656 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Chaetothyriales;family:Herpotrichiellaceae;genus:Exophiala;species:Exophiala dermatitidis; 0.886984137 0.809448455 0.819703042 0.816683507 357014880 chitinase Paenibacillus elgii B69 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus elgii; 1.320992327 1.30217141 1.270508011 1.280801499 1.277447283 1.28550508 1.262150401 1.266603981 1.282468922 1.299894792 1.274255602 1.287577306 1.246183543 1.221904059 1.23343902 1.253296048 1.296440849 1.29403174 325110611 ccmL Planctomyces brasiliensis DSM 5305 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Planctomyces;species:Planctomyces brasiliensis; 1.102198797 1.055462292 1.099701701 1.106563536 1.063095214 1.098275095 1.10957067 1.057227111 1.0519274 1.11677159 1.085634569 1.095630766 1.090516945 1.082863757 1.024817984 1.063428802 1.082827861 1.091042853 198266804 alkb Octadecabacter antarcticus 238 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 0.920295673 0.83447025 0.833012164 0.861742079 0.854810278 0.832372157 0.83113813 0.815203959 0.834789066 0.903716771 0.887025736 0.812729337 0.870584031 0.806032163 0.917137032 0.887360179 283457613 amyA Rothia mucilaginosa DY-18 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Rothia;species:Rothia mucilaginosa; 0.847711764 0.844454937 0.812377814 0.817660767 0.795665875 0.801091317 0.828514655 0.792947306 0.866488976 118424415 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.930995019 0.987805481 0.919737583 0.928317679 0.931515943 0.933694793 0.897340811 0.902733709 0.897332609 0.903130746 0.927145395 0.962179013 0.960541916 0.933515503 0.924182071 0.888795233 0.92690551 0.941459087 157918173 acetylglucosaminidase Salinispora arenicola CNS-205 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora arenicola; 0.926439898 0.928921777 0.950426005 0.899800705 0.85079852 0.879477183 0.850852558 0.877718705 0.916070887 0.962458112 0.895876084 0.869856491 0.907599888 0.940882096 0.842506089 0.891004587 0.906878485 87303484 PRK Synechococcus sp. WH 5701 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 1.278979001 1.257989993 1.285748156 1.266496108 1.290960233 1.294943103 1.261638338 1.269346166 1.257655586 1.261560505 1.280309636 1.294926019 1.245333505 1.233263152 1.254076964 1.261094663 1.306774919 1.273653144 353193550 bphd Mycobacterium rhodesiae JS60 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 0.840767519 0.865351286 0.867754337 0.862633733 0.80966667 0.830022174 0.871710943 0.818640688 0.818613488 0.822990364 0.853645928 0.863843965 45386223 narg unidentified bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.862250821 0.852115957 0.914774407 0.856360436 0.802656918 0.834118004 0.860519206 0.836873229 0.905543611 0.849068893 108760660 endochitinase Myxococcus xanthus DK 1622 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus xanthus; 0.952945478 0.941256674 0.966889527 0.958112124 0.927516639 0.916545284 0.880285685 0.900929637 0.963897511 0.940925287 0.919172674 0.896737422 0.919606999 0.942341377 0.91691002 0.914720482 0.97306137 0.948826348 90954569 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.425081795 1.415306712 1.407977487 1.467240512 1.403573636 1.421295988 1.343647218 1.425551604 1.404988914 1.433127063 1.390984265 1.452186563 1.38680529 1.415730563 1.392589784 1.44866095 1.395244617 1.406952113 380682713 cysI Phaeospirillum molischianum DSM 120 Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Phaeospirillum;species:Phaeospirillum molischianum; 1.263295603 1.232043653 1.25295033 1.258702679 1.206074246 1.302349426 1.176467523 1.218581765 1.254810597 1.240471653 1.220830929 1.247982416 1.221867454 1.246565151 1.25275204 1.245521743 1.270982649 1.246999539 422314129 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.759817094 0.795136343 209401768 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.071709955 1.03046786 1.037245553 1.087805034 1.072997968 1.015822595 1.008918411 1.068682542 1.094273013 1.018255281 1.013918032 1.061498577 0.998293321 0.950910826 1.016080547 1.00907191 1.059092837 1.033142885 311818420 nitrate_reductase Chlorella vulgaris Nitrogen N Assimilation NA superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Trebouxiophyceae;order:Chlorellales;family:Chlorellaceae;genus:Chlorella; 1.007541541 0.993312363 1.015580942 1.020045332 1.04067152 0.981644592 0.995475157 1.007660763 1.013684281 1.001662484 1.024883521 1.02900737 0.97761531 0.916128012 0.924643297 0.906361503 1.01096814 0.992197481 148264066 linb Geobacter uraniumreducens Rf4 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter uraniireducens; 0.901853797 0.913529759 0.88763026 0.904254343 0.894051949 0.909672789 0.905699252 0.861417027 0.906640661 0.915520212 0.902538827 0.964570448 0.884025783 0.879618396 0.811707229 0.854838544 0.904049099 0.858209876 377572057 bphc Gordonia terrae NBRC 100016 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia terrae; 0.808958904 0.844639567 0.810985246 0.816132989 0.889052055 0.832853112 0.782587699 0.962340417 0.80206075 0.813575659 399539451 mhpb Amycolatopsis mediterranei S699 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 1.06588155 1.106485669 1.018014654 1.07137171 1.069651362 1.008479386 0.968625304 1.002836257 1.048167505 0.963239307 0.988139107 1.03819602 0.993535643 0.937982006 0.978518613 1.026604897 1.184535291 0.979343656 355670276 fthfs Clostridium citroniae WAL-17108 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium citroniae; 1.168125517 1.118703189 1.149566886 1.302983431 1.136359973 1.142783489 1.115588695 1.149168663 1.144259531 1.122715722 1.123523616 1.122793761 1.123962592 1.115613324 1.132221782 1.109819648 1.125883956 1.117914237 87281040 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.949306034 1.040043619 0.947426066 0.955930234 0.932021515 1.007881318 0.950470703 0.93969364 0.908579898 0.99791451 0.965326381 0.98453434 0.950465411 0.971200012 0.923395813 1.002828527 0.951036315 1.00010265 375148485 nosz Niastella koreensis GR20-10 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;genus:Niastella;species:Niastella koreensis; 0.86402201 0.88507891 0.831593702 0.895188714 0.838109379 0.831702221 0.840595279 0.890349996 0.865283564 0.930937774 0.925782917 0.846159589 0.822425983 0.840032724 0.826496885 0.929715881 225684506 ara Paracoccidioides brasiliensis Pb03 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;genus:Paracoccidioides;species:Paracoccidioides brasiliensis; 0.987376396 0.987747546 0.955050352 0.976745598 0.870838535 0.958441496 0.89669197 0.927698695 0.966441173 0.948020246 0.974484826 0.91581538 0.892733734 0.915010017 0.885740723 0.919631741 0.940920618 0.950902642 374330771 dehh109 Pseudovibrio sp. FO-BEG1 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 0.864164271 0.798272324 0.826343555 0.84647656 0.872856957 0.836197221 0.873209939 0.8668064 0.868074247 0.874366308 0.895397413 0.853679444 0.82951966 0.921542673 0.884656985 380447744 nitrilase Pseudomonas pseudoalcaligenes CECT 5344 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas pseudoalcaligenes; 0.964272362 0.930879005 0.896980619 1.011432896 0.895145777 0.935963614 0.897499642 0.955820539 0.957744743 0.940362801 0.895570156 0.941164455 0.905648312 0.897480866 0.894069552 0.91714196 0.98243044 0.945914679 46205560 ara Magnetospirillum magnetotacticum MS-1 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum magnetotacticum; 1.243491457 1.177349153 1.194193873 1.160572047 1.147059807 1.166951942 0.878296862 1.066231637 1.186457309 1.199092693 1.183184518 1.178267445 1.161361167 1.169310293 1.070001914 1.108588564 1.221553789 1.227139872 118591563 tktA Stappia aggregata IAM 12614 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 0.990694309 1.008996781 0.962113864 0.993381229 1.008872696 0.999829525 0.986041544 1.008360626 0.989087108 0.99157927 0.993860647 0.967726439 0.899120231 0.921237538 0.890188571 0.918931189 0.978574292 1.038082117 146188525 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.834896599 0.799919873 0.809489707 0.817958363 0.859809336 0.840878783 379059290 amyA Serinicoccus profundi MCCC 1A05965 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Serinicoccus;species:Serinicoccus profundi; 0.887192736 0.854709179 0.821719283 0.856537852 0.885977913 0.86494042 0.855911094 0.847899691 0.844780099 0.868481974 0.795189231 0.894629965 0.812113286 0.83694452 377807676 vana Burkholderia sp. YI23 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 1.64468622 1.570512628 1.568793254 1.570606563 1.526026279 1.610566736 1.517122743 1.532165756 1.559608235 1.525929025 1.563150057 1.543317313 1.517817961 1.50975716 1.489592711 1.546076032 1.588204201 1.537759564 163794539 mer alpha proteobacterium BAL199 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 0.995255672 1.020760944 0.965180367 1.024151102 0.956044573 0.995434206 0.910882427 1.054557065 1.037886254 0.966849795 0.92987733 1.012506045 0.974396478 0.892348509 0.858528541 0.958575741 1.036115213 1.043226059 291345146 chitinase Streptomyces ghanaensis ATCC 14672 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces ghanaensis; 1.521535304 1.511970424 1.489502371 1.486770928 1.484099667 1.552125877 1.48282508 1.502545482 1.478198849 1.491381016 1.48671138 1.485226982 1.457509561 1.466553046 1.441472486 1.490235433 1.495015374 1.491487286 225194049 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.995235229 1.010742315 1.000970272 0.999415388 0.991689137 1.033679866 0.999818333 0.928190541 1.036302636 1.059283409 0.928955454 0.980713272 0.919368632 0.9346628 0.945993306 0.933555002 1.015989796 1.042108059 328919037 terc Pseudomonas mendocina NK-01 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas mendocina; 0.952530508 0.90427153 0.911072375 0.92301607 0.928779854 0.92012617 0.908851094 0.886123185 0.917367998 0.93774801 0.949598771 0.943376991 0.89242806 0.911505248 0.832076716 0.91710003 0.940517768 0.934301764 209485857 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.879138582 0.830480014 0.817840402 0.80144698 0.818337061 0.812338185 0.820898023 0.833732359 0.840481798 256723237 nirk Nectria haematococca mpVI 77-13-4 Nitrogen Denitrification NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Nectria;species:Nectria haematococca; 0.900668867 0.92670428 0.862708422 0.892100237 0.826665118 0.928236113 0.896643523 0.894128483 0.927005987 0.897459465 0.836608109 0.868245327 0.821748114 0.878041207 0.785637726 0.837194196 0.863185437 0.912643988 150036110 soxY Halochromatium salexigens Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Halochromatium; 1.39839263 1.352399767 1.390934236 1.377101645 1.385845282 1.413122856 1.372106301 1.386613034 1.379702966 1.376867987 1.396578276 1.385170714 1.352777108 1.321360811 1.35018986 1.359338213 1.410086841 1.349436279 93354671 arylest Ralstonia metallidurans CH34 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 1.315968729 1.245363893 1.267155855 1.281336152 1.238804849 1.239978831 1.235824564 1.289104227 1.280635523 1.246205331 1.245346389 1.269912933 1.232567957 1.209127244 1.238464917 1.245226984 1.274649421 1.222657465 337741987 SoxB Oligotropha carboxidovorans OM5 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Oligotropha;species:Oligotropha carboxidovorans; 0.841763598 0.859147731 0.831195601 0.863267375 88810793 mer Nitrococcus mobilis Nb-231 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Nitrococcus;species:Nitrococcus mobilis; 0.936032945 0.929749797 0.840611922 0.908147028 0.871794586 0.912889764 0.898650503 0.855252724 0.920850567 0.849525953 0.861557998 0.876530807 0.836956623 0.863328207 0.857223506 0.846368882 0.920155128 0.862103316 367474368 ben_bcla Bradyrhizobium sp. ORS 285 virulence NA NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.880488109 0.896015584 0.850356264 0.876964444 0.8424 0.845337763 0.915813954 0.913993155 0.87018657 0.92177859 0.890727141 330427312 cmci Pusillimonas sp. T7-7 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Pusillimonas; 1.060695943 1.036193245 1.030735244 1.025182044 1.016827829 1.029770752 1.017789485 0.985400688 1.032081486 1.002129898 1.026849936 1.025534626 1.016506363 1.016284541 1.012435765 1.023704905 1.055787054 1.019057465 384067808 amyA Fibrella aestuarina BUZ 2 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Fibrella;species:Fibrella aestuarina; 0.947124193 0.888110188 0.866120871 0.852218789 0.850892965 0.842420698 0.839051359 0.808087257 0.859942317 0.836307667 0.843676603 0.90840455 0.829806485 0.912874209 146404506 ben_bcla Bradyrhizobium sp. BTAi1 virulence NA NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.832370873 0.896727317 0.857614389 0.912432372 0.918824498 0.886299818 0.855888717 0.867086363 0.877977894 0.875829922 0.857661957 0.869778101 0.862403151 0.862078528 0.900002577 0.85504402 0.891301709 0.867950459 339412586 xylanase Spirochaeta thermophila DSM 6578 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Spirochaeta;species:Spirochaeta thermophila; 0.824979015 0.820047863 0.781643971 0.812913537 0.800348541 288914845 endoglucanase Azospirillum sp. B510 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum lipoferum; 0.861589894 0.829362673 0.823275547 0.785640787 0.842928307 0.814576443 0.879914999 0.809280458 0.803742322 0.895849319 114315149 GAPDH_Calvin Granulibacter bethesdensis CGDNIH1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Granulibacter;species:Granulibacter bethesdensis; 0.843594136 0.82083304 0.878203462 0.826018736 0.830951963 0.839407045 0.896175792 0.848751237 0.828009729 0.86574497 0.821789657 126735630 tktA Roseobacter sp. CCS2 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 0.792087399 0.893597292 0.765105004 0.891627532 0.795788556 0.799558024 0.808920215 0.754523403 0.884706671 164455982 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 1.072594303 1.032724059 1.05015325 1.085665753 1.056394913 1.048553498 1.0780818 1.088799544 1.051705493 0.997502782 1.03133608 1.034876183 1.006395613 0.987633558 0.964206913 0.980653417 1.052475777 1.029303105 338311247 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.838425978 0.869285652 0.879212151 0.889986025 0.926913341 0.882849156 0.961148863 0.875855709 0.916959701 0.95714203 0.930451576 0.925151527 0.842358724 0.884443087 0.918916036 0.824981972 0.954557235 0.947325925 297561223 amyA Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Nocardiopsis;species:Nocardiopsis dassonvillei; 1.08469626 1.086486158 1.029586347 1.046582799 1.018785265 1.083298227 1.015358904 1.00974412 1.05580263 1.026913696 1.032468478 1.042332493 1.024395839 1.013496668 1.010197934 1.032935752 1.06323244 1.037708242 224537333 ara Bacteroides cellulosilyticus DSM 14838 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides cellulosilyticus; 0.866489897 0.853979347 0.863317916 0.919014759 0.852242887 0.909917735 0.877838779 0.884504937 0.856667345 0.901042019 0.848040389 0.862750614 0.857399173 0.895440722 0.835261985 0.888467642 0.928895834 0.918709232 110286751 GAPDH_Calvin Chelativorans sp. BNC1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 0.852717338 0.865134289 0.848859515 0.822549783 0.804919446 0.838577328 340525314 atzb Amycolatopsis mediterranei S699 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 1.235169564 1.174107801 1.181878263 1.195455631 1.19857909 1.215072716 1.186290612 1.183618714 1.19074303 1.160102251 1.168143083 1.179942835 1.160177276 1.129774916 1.136645945 1.144588219 1.208325504 1.197063251 68230042 xylanase Frankia sp. EAN1pec Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 0.905365104 0.927193655 0.912751833 0.895229853 0.89755934 0.900201535 0.896306067 0.900996999 0.909908535 0.920112786 0.876494023 0.902880743 0.882772867 0.890490772 0.839976925 0.891218365 0.875116941 0.924798581 161339347 catechol_b uncultured bacterium Organic Remediation Aromatics Other aromatics superkingdom:Bacteria; 1.127051636 1.087665832 1.121458462 1.122647155 1.116702529 1.151420415 1.092837217 1.063818308 1.093907629 1.086528023 1.083035107 1.105316453 1.081231025 1.108796283 1.036814861 1.103959526 1.129389108 1.138481418 359793747 dehh109 Mesorhizobium alhagi CCNWXJ12-2 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium alhagi; 1.368228227 1.394166974 1.338767036 1.345773051 1.345410564 1.409008929 1.322413695 1.340057676 1.306169787 1.342038552 1.329735795 1.343888657 1.318458159 1.336004093 1.318770601 1.32066119 1.382028143 1.372794391 18034347 dsra Desulfobulbus elongatus Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobulbaceae;genus:Desulfobulbus; 0.812078682 0.819805766 0.81062879 0.840273012 82791413 alkb uncultured bacterium Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria; 0.867238563 0.835102955 0.920891109 0.823116068 0.816484503 0.827089242 0.85965723 0.907592915 0.822797624 0.890862851 0.929153441 0.845251948 0.820792612 0.906464781 0.857290325 88807733 CsoS1_CcmK Synechococcus sp. WH 7805 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 1.029514846 0.994456769 1.036899026 1.033639323 1.036375027 1.059556421 1.038220066 1.055663078 1.025635909 1.002636379 0.972675476 0.978220455 1.014127185 0.970954118 0.932736652 0.950847233 1.019728559 1.024381286 156532316 amyA Cronobacter sakazakii ATCC BAA-894 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Cronobacter;species:Cronobacter sakazakii; 0.782077176 0.875832491 0.828285416 0.906109146 0.838353526 0.893922481 0.83526329 0.838248827 0.914068264 0.871424291 0.905468388 0.842119001 0.858451368 0.898634068 0.868253211 0.887163621 359369643 ppx Pseudomonas psychrotolerans L19 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas psychrotolerans; 1.166484938 1.175400952 1.165898317 1.119197845 1.115357605 1.158214751 1.098617459 1.140179566 1.129048472 1.136628232 1.13783067 1.135472001 1.095774882 1.119292684 1.085269039 1.100461418 1.147682481 1.150906098 29606527 endochitinase Streptomyces avermitilis MA-4680 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 1.083709011 1.013066925 0.979937514 0.946076472 0.97271717 0.989619288 0.918731462 0.913435477 0.935395975 0.981988835 0.941876763 0.946981525 1.022569152 0.95331891 0.924163221 0.93590354 0.963570527 1.008099391 55791946 catechol_b uncultured bacterium Organic Remediation Aromatics Other aromatics superkingdom:Bacteria; 0.82904843 0.870618565 0.826566716 0.864846263 0.815427754 0.812014014 0.838728557 0.843768351 0.875362964 0.820098721 0.826510907 0.858014508 0.843980367 0.849394518 0.825657144 0.844075791 0.854888636 126178328 mcra Methanoculleus marisnigri JR1 Carbon Cycling Methane Methanogenesis superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;family:Methanomicrobiaceae;genus:Methanoculleus;species:Methanoculleus marisnigri; 0.973833838 0.985353724 0.976319213 0.984944834 0.96901912 0.95864915 0.969994463 0.95563768 0.967544258 0.948303374 0.942303725 0.945717409 0.920406623 0.92941407 0.888414444 0.929340371 0.979319897 0.985651915 384073539 cysJ Halobacillus halophilus DSM 2266 Sulfur Reduction NA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Halobacillus;species:Halobacillus halophilus; 0.876838364 0.875955571 0.899235351 0.964651418 0.929700976 0.843451917 0.915164059 0.946349882 0.895420471 0.873493787 0.926560869 0.939741591 0.894635418 0.883530866 0.862575784 0.864866105 0.872087841 0.866610815 40286838 scnabc Methylobacterium thiocyanatum Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 0.955647103 0.947459142 0.954122974 0.950911763 0.95237551 0.953950463 0.942417557 0.938817721 0.915587696 0.941459057 0.907983097 0.923488955 0.897084973 0.896257388 0.928895531 0.892614861 0.968099106 0.949226459 334123694 amyA Enterobacter hormaechei ATCC 49162 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter hormaechei; 0.859917807 0.834647175 0.901013087 0.801809731 0.811994931 0.901601683 0.868221865 0.823607082 0.850918602 0.892149445 0.883056182 320534819 amyA Actinomyces sp. oral taxon 171 str. F0337 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 171; 1.215587535 1.211598387 1.164933391 1.192910121 1.157196748 1.210933175 1.158724848 1.195613411 1.182638492 1.186158823 1.150908729 1.168772779 1.136086467 1.144891296 1.096453577 1.155970686 1.212500453 1.187899757 217968831 arra Thauera sp. MZ1T Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Thauera; 1.106301355 1.136586426 1.11172448 1.114594302 1.131791528 1.171015671 1.127631292 1.11609695 1.12930731 1.13930981 1.135208333 1.138295849 1.123101303 1.141972536 1.131022165 1.138862146 1.162844158 1.141595361 346310855 CsoS1_CcmK Collinsella tanakaei YIT 12063 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Collinsella;species:Collinsella tanakaei; 1.122205354 0.958075384 0.962456414 1.053198318 0.943231973 0.99893973 0.980303022 0.971104851 1.02693099 1.018370153 0.977551833 0.997250557 0.974184981 1.01100097 0.990923258 0.991780402 1.029746059 1.042889921 118762397 mdlc Sphingomonas wittichii RW1 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 0.940666839 0.855508562 0.910405296 0.928231714 0.945251603 0.919896702 0.953601899 0.929935149 0.885550054 0.925540281 0.963403703 0.922519562 0.875585313 0.870280297 0.830966853 0.879353103 0.867509226 0.921158585 307152744 CsoS1_CcmK Cyanothece sp. PCC 7822 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 0.88978074 0.922869578 0.885858061 0.919288117 0.816410512 0.904037176 0.842051838 0.826360146 0.880811215 0.857596155 0.862474129 0.875861417 0.92017965 0.889382744 296022460 mannanase Cellulomonas flavigena DSM 20109 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas;species:Cellulomonas flavigena; 1.188231803 1.151027989 1.137693352 1.143882071 1.151816633 1.166376172 1.140875349 1.142173646 1.13764649 1.118630146 1.142287604 1.138266051 1.141346093 1.110210786 1.138601008 1.153073719 1.179540966 1.132279074 146310629 arylest Enterobacter sp. 638 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 0.853578317 0.835182023 0.847468099 0.775219865 0.826718565 0.822410689 0.828611411 0.826293334 0.836416947 0.857266118 60476038 rubisco uncultured bacterium Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria; 0.821737053 0.848837168 0.82222156 0.800083921 0.824735442 0.868995043 0.85296985 219859378 rubisco Arthrobacter chlorophenolicus A6 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 1.071806279 1.053267148 1.061301035 1.057703029 1.011153396 1.020875073 1.0260418 1.013380753 1.046252737 1.034493151 1.041210048 1.066544382 1.010404057 1.007071178 1.007261482 1.032340756 1.083123359 1.064536228 238602793 phenol_oxidase Moniliophthora perniciosa FA553 Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Marasmiaceae;genus:Moniliophthora;species:Moniliophthora perniciosa; 0.928929884 0.948761107 0.94213282 1.032427057 0.976908625 0.998456286 0.952623924 0.986957784 0.974184261 0.987623432 0.975883875 0.965746008 1.002899108 0.953815622 0.889414517 0.981553846 0.98354588 0.981435995 119401331 invertase_fungi Aspergillus clavatus NRRL 1 Carbon Cycling Carbon degradation sucrose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 0.803393481 0.896509523 0.847094586 0.854972286 0.88638583 0.886276638 0.811463929 0.839634142 0.973684108 0.877456697 0.87709891 0.855950938 0.8575063 0.801518519 0.867626292 296426271 phenol_oxidase uncultured bacterium Carbon Cycling Carbon degradation Lignin superkingdom:Bacteria; 0.870353799 0.869780004 0.856308716 0.941182024 0.901736599 0.866001024 0.893295222 0.885373354 0.886087099 0.872706175 0.856944987 0.872343219 0.904764943 0.86070892 62468106 bco Acidovorax sp. 2FB7 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 0.939791741 0.985842613 0.924233512 0.80868387 0.819387846 0.812778392 0.92785426 0.868279522 0.86519903 0.755352111 0.822807247 375139998 merb Mycobacterium rhodesiae NBB3 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 1.076769047 1.105526185 1.034060014 1.04695936 1.055198367 1.073465594 0.991258701 0.989744499 0.984661452 1.030701695 0.987952308 1.023542808 1.002755944 1.021019095 1.011685861 1.004591944 1.065932356 1.099314665 124266671 rubisco Methylibium petroleiphilum PM1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 0.963682763 0.961836281 0.96058493 0.985293691 0.910007879 0.937468941 0.944937295 0.978074925 0.990423793 0.971697807 0.884221331 0.99662802 1.025273745 0.951223399 0.957256807 0.932940915 0.921174199 0.95184126 89512298 nifh uncultured nitrogen-fixing bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.984452301 1.04078994 1.000848227 1.017911566 0.953090033 0.997043011 1.013673546 0.975728052 0.962293792 0.980241869 0.962020426 0.979475236 0.975964919 0.94927223 0.976164196 0.97296577 1.034151079 0.967750973 94471157 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.862320746 0.840604915 0.904520169 0.884123024 0.856044582 0.859974787 0.890018282 0.854717639 0.799412391 0.852957788 0.871816185 237858225 GAPDH_Parabasalia Joenoides intermedia Other Phylogenetic NA superkingdom:Eukaryota;order:Cristamonadida;family:Lophomonadidae;genus:Joenoides; 0.929440169 0.89873853 0.796170529 0.842354117 0.793349656 0.808376603 0.848194751 0.835817624 0.821628076 0.849287757 325979754 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.926754816 0.884761331 0.957562791 0.951119115 0.975904444 0.981908561 0.950660058 0.915084381 0.936006227 0.959819146 0.92505634 0.934952913 0.910893466 0.961088378 0.983429418 0.920386129 0.922584942 0.917681516 118174222 tfth Mycobacterium smegmatis str. MC2 155 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 0.839917567 0.796981631 0.833964309 0.825238154 0.877880866 0.825685639 0.831613672 0.802615952 0.83840776 0.808016074 0.861217741 0.863158543 0.886371736 309308270 phospholipase_B_fungi Puccinia graminis f. sp. tritici CRL 75-36-700-3 virulence degradation NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;order:Pucciniales;family:Pucciniaceae;genus:Puccinia;species:Puccinia graminis; 1.088689268 1.14009083 1.082929898 1.09357338 1.092032253 1.133019513 1.037885065 1.038544403 1.100413291 1.100071644 1.091924215 1.080164626 1.092905982 1.068695169 1.065146858 1.048498061 1.129821208 1.114703907 220935284 arylest Thioalkalivibrio sp. HL-EbGR7 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio;species:Thioalkalivibrio sulfidophilus; 0.807747834 0.834756248 0.821809775 0.807400193 0.813930532 0.793362235 0.790422595 0.830837464 339885150 gdh Actinomyces sp. oral taxon 448 str. F0400 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 448; 1.217084595 1.216707176 1.198324716 1.197163583 1.18698198 1.21676292 1.186192758 1.199984832 1.185920175 1.188504273 1.191535219 1.185573046 1.177746155 1.151029392 1.149396265 1.180475645 1.21019642 1.194678126 291197130 exoglucanase uncultured fungus Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi; 0.981027335 0.97914452 0.975574528 0.952189737 0.969529202 0.984294649 0.974001325 0.945518686 0.970795018 0.99280333 0.956992447 0.956741065 0.918912062 0.913212193 0.886549411 0.893050076 0.973171598 0.96610062 227978056 bphF1 Tsukamurella paurometabola DSM 20162 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Tsukamurellaceae;genus:Tsukamurella;species:Tsukamurella paurometabola; 1.042383147 1.040048181 1.023150955 1.027412195 0.943927639 0.961135957 0.95023833 0.997398988 1.028421177 0.988297241 0.980801053 0.993590031 0.955504949 0.946267324 0.956311404 0.956472001 1.036680299 1.009665505 119955268 cutinase Mycobacterium vanbaalenii PYR-1 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 0.857991113 0.9026323 0.898785633 0.945019737 0.88370204 0.880087043 0.864119157 0.863154379 0.854205089 0.839649394 1.056260804 0.879207941 0.827475659 0.831206001 0.853237821 0.902507188 0.900686455 323318246 chitinase Vibrio sinaloensis DSM 21326 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio sinaloensis; 0.977106528 0.906220095 0.937099506 0.982334386 0.912619498 0.888507855 0.825818505 0.947017051 0.978117811 0.893027412 0.915504976 0.986199562 0.906482279 0.882125379 0.924641967 0.921053488 0.949943955 0.945991815 157679479 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.098836017 1.046269277 1.055007693 1.063874176 1.01380568 1.046847361 0.999908553 1.021211781 1.029354662 1.009721965 1.026992619 0.998618047 0.977749756 1.046508022 0.976189393 0.994041331 1.003981336 1.03677854 239787498 cellobiase uncultured bacterium Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria; 0.823615864 0.872868824 0.868551944 0.890497799 0.872043365 0.886474476 0.890327051 0.83030514 0.862587115 0.855498441 0.876824042 0.889165203 0.802471053 0.880360282 0.803591839 0.832568627 0.858272834 0.899280187 71402610 nasa Lyngbya aestuarii PCC 7419 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Lyngbya;species:Lyngbya aestuarii; 1.161361205 1.148573467 1.136257546 1.168925235 1.138322506 1.164172935 1.14202271 1.167637324 1.181206854 1.136149598 1.128721766 1.151592097 1.130153782 1.139012351 1.126066336 1.121544431 1.16437155 1.124002801 257454642 ppk Enhydrobacter aerosaccus SK60 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Enhydrobacter;species:Enhydrobacter aerosaccus; 1.062305497 1.044648226 1.101492944 1.075207314 1.06207246 1.091571842 1.091809923 1.092917099 1.062680263 1.049098468 1.024737843 1.038273964 1.038754475 1.022536446 0.982879294 1.02687275 1.065683592 1.057494721 398123725 xylj Pseudomonas sp. GM21 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.944498962 0.889730208 0.895188326 0.951709433 0.870446149 0.919611285 0.899643308 0.920469072 1.144922726 0.910690145 0.91783218 0.931219391 0.955127216 0.918455906 0.858569218 0.884407369 0.958992044 0.908309909 325914822 ara Xanthomonas vesicatoria ATCC 35937 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas vesicatoria; 1.071354959 0.981571091 1.004174498 0.990581248 0.920939398 1.000313529 0.930761732 0.943730503 0.990294307 0.991842021 0.981297361 0.966356288 0.964303625 0.969350963 0.944711042 0.94201103 0.987593826 1.004869499 296118531 xylxy Corynebacterium ammoniagenes DSM 20306 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium ammoniagenes; 0.822594131 0.852581018 0.839575589 0.819943678 0.814018992 0.827085485 0.793310465 0.803108079 0.814216482 0.81639455 0.814313547 0.830400427 0.892832313 330466510 mdlc Verrucosispora maris AB-18-032 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Verrucosispora;species:Verrucosispora maris; 0.959655534 1.019625451 0.998804857 0.947145855 0.883181943 1.00526748 0.931825974 0.892710564 0.92678392 0.978762086 0.950712676 0.908550263 0.905854075 0.981668576 0.93070902 0.922863231 1.001812501 0.997555528 222138072 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.792747118 0.857418791 0.883731956 0.807466969 0.852108458 0.866480979 0.862775775 0.88912049 0.837672001 0.839767313 0.852001036 0.804578118 0.843680889 0.853335272 257736452 pectinase (pectate_lyase) Erwinia chrysanthemi Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya; 0.801085382 0.820042482 0.820611771 0.801967951 0.861833969 0.813530751 0.821743083 0.841499844 54026346 terc Nocardia farcinica IFM 10152 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 1.087634451 1.138366386 1.142202608 1.084344298 1.098075926 1.154484897 1.149563989 1.094008084 1.091781687 1.114807018 1.050090059 1.093674766 1.039678453 1.096992814 1.051799471 1.052076684 1.10038727 1.108940262 335437739 amyA Halorhabdus tiamatea SARL4B Carbon Cycling Carbon degradation Starch superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halorhabdus;species:Halorhabdus tiamatea; 1.037377597 1.069487369 0.993649662 1.038700122 1.006421097 1.025988087 0.98372102 0.99815857 1.042179952 1.021162949 0.998909555 1.023872491 0.980068921 0.997597906 0.961202182 0.986176445 1.037876896 1.06768423 347364943 assa uncultured prokaryote Organic Remediation Other Hydrocarbons NA 0.924911664 0.918540193 0.848002684 0.956742025 0.90819441 0.977679106 0.93925657 0.940980057 0.927177927 0.888762135 0.882834483 0.91858692 0.860099441 0.853763417 0.806843243 0.826666156 0.923515826 0.960202427 12667197 cmua Hyphomicrobium chloromethanicum Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium; 0.952350052 0.985319621 0.945031691 0.975706348 1.004611997 1.007466351 0.942387504 0.979165346 0.992530113 0.96503865 0.970182309 0.977818428 0.963509461 0.975623116 0.949739363 0.921456085 0.979147337 1.006754091 262078285 urec Haliangium ochraceum DSM 14365 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Kofleriaceae;genus:Haliangium;species:Haliangium ochraceum; 1.118398365 1.099372217 1.123030529 1.144441691 1.127205102 1.14434004 1.108505453 1.143544555 1.117199177 1.088006099 1.117001697 1.114261627 1.128909977 1.071078352 1.040458764 1.074701496 1.163141982 1.086808293 339719841 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.803704087 0.805650508 256685237 xyla Jonesia denitrificans DSM 20603 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Jonesiaceae;genus:Jonesia;species:Jonesia denitrificans; 0.822663328 0.814250617 0.83667613 0.824543381 0.797683314 0.818976184 0.836236428 0.797766872 0.803649348 0.809355273 0.806876285 149125660 terc Methylobacterium sp. 4-46 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 0.994693477 1.021901766 1.044577387 1.066631295 1.006811572 0.968168141 0.999657048 1.025340131 1.07231229 1.031708265 0.986566649 1.0335632 0.928691897 0.96677662 0.939204274 0.938094982 0.985304724 1.020645947 74420708 FBPase Nitrobacter winogradskyi Nb-255 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter winogradskyi; 0.958867807 0.885000781 0.914881735 0.967706325 0.886906874 0.928550827 0.909380925 0.947766461 0.947417192 0.895201107 0.965894093 0.93721445 0.90186616 0.910430215 0.876328554 0.915445363 0.963096003 0.876535814 19887085 mcra Methanopyrus kandleri AV19 Carbon Cycling Methane Methanogenesis superkingdom:Archaea;phylum:Euryarchaeota;class:Methanopyri;order:Methanopyrales;family:Methanopyraceae;genus:Methanopyrus;species:Methanopyrus kandleri; 0.854797264 0.884273524 0.842361883 0.81587759 0.845754315 0.877498133 0.834945351 0.824654507 0.830413832 0.831171564 0.874362644 350552340 rubisco Thiorhodospira sibirica ATCC 700588 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thiorhodospira;species:Thiorhodospira sibirica; 1.305223428 1.265823466 1.276515894 1.315090027 1.286183994 1.291670416 1.295255948 1.309518942 1.291656116 1.259070469 1.31225844 1.317167324 1.286576196 1.23495684 1.243443753 1.261168041 1.265323316 1.238917047 398320897 alkb Amycolatopsis mediterranei S699 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 0.906419977 0.892993312 0.932366113 0.878036083 0.915880661 0.913313349 0.883765644 0.879591766 0.913363805 0.91655853 0.905721667 0.886133348 0.868605995 0.861139416 0.915743252 0.897651233 0.923037716 116249151 nahf Rhizobium leguminosarum bv. viciae 3841 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 0.852879326 0.855599337 0.876391226 0.849581059 0.845817539 0.834197703 0.846274458 0.858223486 0.853966063 0.879578922 0.829402224 0.886660676 0.840519196 0.852716977 73541215 arsc Ralstonia eutropha JMP134 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 0.778322797 0.830509138 0.847421692 0.865659528 0.838441574 0.867929526 440136 dehh109 Pseudomonas putida Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.910779623 0.938828814 0.91567984 0.895865384 0.926789148 0.910503755 0.931541888 0.899030321 0.898752475 0.869503047 0.988983479 0.88753816 0.856980177 0.914718315 0.901800572 0.80730909 0.89403205 335339141 xylanase Halopiger xanaduensis SH-6 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halopiger;species:Halopiger xanaduensis; 0.82281824 0.821926563 0.799226078 0.829086233 0.81353398 0.811908619 0.848945073 0.832939804 7649286 hbh Sagittula stellata Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 0.820159415 0.823135833 0.833404594 0.838062052 0.778150163 0.773942283 0.808449502 320108613 cellobiase Terriglobus saanensis SP1PR4 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Terriglobus;species:Terriglobus saanensis; 0.794554194 0.803451427 0.825913955 0.854234702 222477096 dsra uncultured bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.065661601 1.050530942 1.059161939 1.018491651 1.089583201 1.083986086 1.048151535 1.08608382 1.059708428 1.092242951 1.057285107 1.078845314 1.051427749 1.067598593 1.080097683 1.047002385 1.08100729 1.094024058 114227221 fccab Alkalilimnicola ehrlichii MLHE-1 Sulfur Sulfide Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Alkalilimnicola;species:Alkalilimnicola ehrlichii; 0.932386288 0.970113715 0.925510857 0.920544381 0.977409954 0.989503907 0.949384894 0.929483832 0.881284018 0.984281992 1.099672353 0.944476243 0.959822815 0.968882653 0.964380583 0.973513837 0.93394469 0.983201947 151281192 nitro Janthinobacterium sp. Marseille Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Janthinobacterium; 1.085928456 1.046148713 1.009388107 1.126332806 1.025328265 1.062553892 0.993000123 1.070307036 1.054593076 1.039025551 1.014394101 1.075595767 1.002001584 0.994482973 1.013285159 1.005192225 1.100921649 1.0367297 2199504 rgh Botryotinia fuckeliana Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Botryotinia; 0.785793671 0.815169894 0.854200735 0.81738202 0.864046524 0.790327816 0.808614437 0.84013225 77461488 tktA Pseudomonas fluorescens Pf0-1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 0.996896072 1.024693712 0.917398346 0.9886673 0.964180194 1.069402273 0.914307182 0.936417317 0.970385225 1.002988516 0.958166381 0.971815945 0.930851231 0.918529999 0.888997348 0.929724212 1.023403157 1.010598942 359785813 urec Halomonas sp. GFAJ-1 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas; 1.115079137 1.047923098 1.127502202 1.078805641 1.046555031 1.089705245 1.03972213 1.046461313 1.054723172 1.017978846 1.042904458 1.051418166 1.073999124 1.05657336 1.104521368 1.039928192 1.104479692 1.137081891 257053462 mannanase Halorhabdus utahensis DSM 12940 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halorhabdus;species:Halorhabdus utahensis; 0.89492744 0.969165027 0.929956704 0.928471631 0.949510832 0.960204996 0.890936493 0.908662554 0.895953414 0.917328004 0.930834427 0.895937619 0.907893351 0.911549249 0.888209914 0.884586907 0.943230189 0.940508064 157404654 rd Dehalococcoides sp. VS Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 0.824163726 0.942839263 0.850267241 0.891006365 0.808601561 0.840959485 0.846204982 0.849057039 0.88626677 0.861232283 0.80133642 0.839339037 269957581 amyA Xylanimonas cellulosilytica DSM 15894 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Promicromonosporaceae;genus:Xylanimonas;species:Xylanimonas cellulosilytica; 0.795528035 0.822028548 0.770993579 0.81494974 0.879196598 0.833952533 0.784520262 0.78283485 0.827334963 307742753 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.861336186 0.883696221 0.861616045 0.868321603 0.852197314 0.852375366 0.853349962 0.848323803 0.860816463 0.862013058 0.876815292 308228031 GAPDH_Calvin Oscillochloris trichoides DG6 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Oscillochloridaceae;genus:Oscillochloris;species:Oscillochloris trichoides; 0.931284263 0.894878251 0.931926138 0.930264829 0.931610711 0.96215491 0.938316145 0.929293407 0.920776769 0.917715143 0.926931292 0.939661217 0.901973094 0.858245446 0.861489428 0.853769014 0.91365903 0.875547161 68239761 dsrB Prosthecochloris aestuarii DSM 271 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Prosthecochloris;species:Prosthecochloris aestuarii; 0.811729668 0.792923993 0.848021427 0.814055541 288337318 ara Prevotella buccae D17 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella buccae; 1.004227473 0.882770812 1.035492046 0.969668321 0.931867081 0.871369383 0.892359776 0.989827701 0.94459472 0.912500488 0.919156355 0.999492219 0.916756365 0.883989624 0.885639371 1.045532109 0.900323746 365884219 xylc Bradyrhizobium sp. ORS 375 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.875236467 0.843767784 0.865263169 0.906543596 0.852249514 0.858650772 0.879994605 0.894229491 0.87620337 0.853103173 0.921529546 0.894691897 0.86473907 0.845648762 0.859387861 0.812931675 0.882836724 0.856136122 304558342 amyA Edwardsiella tarda FL6-60 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Edwardsiella;species:Edwardsiella tarda; 1.049124302 1.005229893 1.035169115 1.046234842 0.994136584 1.025983141 0.983923463 1.052896199 1.019607071 1.01161477 1.017912626 1.010153553 0.980330899 1.024791178 0.980962148 1.02167169 1.030136782 0.997843976 237861577 phenol_oxidase Polyporus grammocephalus Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Polyporaceae;genus:Polyporus; 0.955321275 0.908511188 0.959401087 0.937066987 0.932190115 0.948048536 0.904949201 0.953493562 0.921505802 0.951194839 0.926508985 0.934158121 0.890866224 0.834104831 0.845608566 0.914091064 0.930346425 0.888536549 123967458 one_ring_23diox Sphingobium yanoikuyae Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium; 0.808832478 0.851937788 0.863915947 0.855201831 0.844577368 0.882624266 0.844848485 0.814084576 0.884445715 0.855914222 0.901168386 0.825423364 0.888213234 0.846924558 0.849815423 0.836811753 0.85788029 189340940 b_lactamase Chlorobium limicola DSM 245 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium limicola; 1.085942832 1.052842322 1.076727052 1.060594573 1.070636359 1.070987653 1.08994071 1.065969088 1.062494933 1.100533331 1.104255207 1.064230096 1.082157657 1.054523352 0.997675722 1.03442079 1.045854872 1.054858201 221157081 catechol_b Thermomicrobium roseum DSM 5159 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Chloroflexi;class:Thermomicrobia;order:Thermomicrobiales;family:Thermomicrobiaceae;genus:Thermomicrobium;species:Thermomicrobium roseum; 1.21802769 1.203870432 1.153818072 1.182940797 1.174888749 1.200443086 1.140961377 1.113201001 1.150631217 1.139204534 1.13394059 1.155411961 1.134124817 1.112947322 1.240043653 1.130274979 1.212058438 1.189439904 352682227 C_CoA_hydratase_DiC4HB Thermoproteus tenax Kra 1 Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Thermoproteus;species:Thermoproteus tenax; 0.961937388 0.979231422 0.93108663 0.952566272 0.954345862 1.003389005 0.957789549 0.945217664 0.954490965 0.981926193 0.938046924 0.916820423 0.994342644 0.926535907 0.886494579 0.932571679 0.954325604 0.975036221 305414824 terc Bacillus subtilis subsp. spizizenii str. W23 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus subtilis; 0.838675793 0.902658961 0.833000904 0.811106155 0.831831801 0.823232712 0.81693424 0.833161956 0.81700092 0.85221464 0.909067658 222437238 pgk Labrenzia alexandrii DFL-11 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia alexandrii; 0.964179368 0.952688633 0.928405325 0.956784222 0.897108844 0.929522114 0.85810439 0.884378029 0.935770709 0.929071869 0.869027802 0.901503499 0.849564418 0.866920484 0.846333668 0.835308483 0.939214256 0.929600302 359296275 amyA Halomonas sp. GFAJ-1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas; 1.016384744 1.014740148 0.938573964 0.985286537 0.941301883 1.016206378 0.954057199 0.922594096 0.945235391 0.959823569 0.951626522 0.948069855 0.924448422 0.946011151 0.890734667 1.000457963 0.984327618 1.021984574 311286805 alkk Pseudomonas fluorescens WH6 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 0.872383525 0.840657507 0.814472825 0.806499088 0.852047376 0.872964951 0.842373523 0.817831274 0.853122343 0.898231074 0.868030973 0.856738434 0.876640319 0.859302959 0.851516208 0.836797368 0.919124204 308433906 amyA Dermacoccus sp. Ellin185 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dermacoccaceae;genus:Dermacoccus; 1.339872173 1.298986602 1.30750155 1.30746206 1.30388216 1.326927938 1.299567611 1.307799419 1.292423639 1.303048127 1.297117165 1.3151716 1.27310661 1.269960995 1.276245987 1.305970665 1.306021691 1.311839542 83654967 xyla Burkholderia thailandensis E264 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia thailandensis; 1.388577987 1.375411527 1.360551485 1.360941664 1.343111555 1.388983023 1.338412832 1.362962529 1.349641458 1.362195342 1.342153586 1.355568571 1.336729953 1.3325589 1.355109478 1.356279487 1.426832206 1.378096114 259032994 xyla Mesorhizobium opportunistum WSM2075 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium opportunistum; 1.142448034 1.128591914 1.099813479 1.141936159 1.100236688 1.110573279 1.080354947 1.117607393 1.117746512 1.082187188 1.081430201 1.115253783 1.067386929 1.073098221 1.084857496 1.101649158 1.140983115 1.114549853 296819231 protease_serine_fungi Arthroderma otae CBS 113480 Carbon Cycling Carbon degradation protein superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Arthrodermataceae;genus:Arthroderma;species:Arthroderma otae; 0.910407169 0.902476009 0.855364894 0.944036159 0.896306023 0.87291372 0.871149001 0.879108849 0.884997274 0.922915109 0.874878899 0.940187166 0.879229859 0.801746936 0.846931837 0.869864478 0.894748896 0.883012101 254946784 amyA Dyadobacter fermentans DSM 18053 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Dyadobacter;species:Dyadobacter fermentans; 1.048737506 1.018085847 1.020676985 1.047032345 1.03740769 1.016433881 1.048541091 1.044436771 1.035112175 1.025955123 1.048476127 1.070814129 0.993275109 0.990454124 0.94578611 0.985172218 1.068740345 1.018522145 209502687 vana Burkholderia sp. H160 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 1.132413656 1.040281337 1.061746104 1.061888585 1.059622334 1.050183267 1.061164951 1.040301221 1.066595219 1.037525907 1.160224333 1.082675586 1.003770375 1.009987188 1.023214663 1.117414 1.075646878 1.089411058 117959692 phenol_oxidase Ganoderma lucidum Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Ganodermataceae;genus:Ganoderma; 1.046460304 0.952298352 0.978565026 1.000680217 0.955029207 0.986088053 0.983967693 0.965830533 1.014193223 0.928172987 0.986134188 0.979616063 0.937338154 0.956425601 0.975963301 0.965462452 1.014790653 0.985145732 77964440 chnb Burkholderia sp. 383 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 0.884817279 0.877639602 0.873138616 0.898163688 0.810251478 0.882580711 0.814897968 0.86888458 0.903050061 0.859556019 0.818631619 0.839822782 0.86853228 0.849202542 0.84762141 0.918642443 397732271 badh Rhodococcus sp. JVH1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 0.884462982 0.939198646 0.907337634 0.922123511 0.851311861 0.922790397 0.813276277 0.823787934 0.868447771 0.890978523 0.841375368 0.88543028 0.908262294 0.865654669 0.888930415 0.929693702 0.885105873 126735928 pgk Roseobacter sp. CCS2 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 0.880124757 0.825459575 0.844516677 0.866236139 0.813423588 0.844586729 0.837404218 0.885999855 0.887333445 0.819313223 0.894696207 385883563 xyla Micromonospora lupini str. Lupac 08 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Micromonospora;species:Micromonospora lupini; 1.169902732 1.133358056 1.163139976 1.155567719 1.173478905 1.183788458 1.154436573 1.151538377 1.144401869 1.132359614 1.163559104 1.19959702 1.152577364 1.131017268 1.153185582 1.1571595 1.174496246 1.143897321 359312312 alkb Gordonia effusa NBRC 100432 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia effusa; 0.777888645 0.854976563 0.798091182 0.898179349 0.868150329 0.834107344 0.81915903 0.833965904 0.820756065 0.856918428 0.805803638 0.872276773 333991723 cutinase Mycobacterium sp. JDM601 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 0.920206711 1.023220151 0.902350199 0.939275536 0.936421955 1.019097715 0.888398112 0.92145498 0.957155937 0.991492101 0.91434811 0.944653718 0.877541695 0.910093986 0.828769023 0.911763873 0.907620422 1.007618127 345855488 merb Streptomyces zinciresistens K42 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces zinciresistens; 1.326493287 1.281761164 1.274945418 1.270357137 1.262109867 1.311477538 1.278462814 1.287943848 1.259006191 1.25432341 1.276957198 1.288465738 1.252616827 1.264171179 1.280176803 1.273671338 1.286777786 1.25637893 29125956 nosz uncultured soil bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.892883532 0.883622196 0.871335052 0.946606083 0.877521177 0.838924503 0.852923454 0.907250427 0.887547124 0.898584722 0.83746907 0.919372096 0.868591634 0.8602124 0.855557114 0.863012667 0.916057939 0.887386006 341614028 B_lactamase_A Citromicrobium sp. JLT1363 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Citromicrobium; 0.900404752 0.889389706 0.823037204 0.843969867 0.838927823 0.896533034 0.88309627 0.890695821 0.880913423 0.858557286 0.856105806 0.845010163 0.842169516 0.834542528 0.898124727 0.88732882 346993824 atzb Ruegeria sp. TW15 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 0.827238981 0.830811372 0.802562358 0.840810323 0.895429889 0.836142105 0.80709735 0.825512579 0.85484832 0.824186239 0.793653646 0.847417913 0.837479766 0.846343612 160917613 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.82244088 0.828301209 0.813901842 0.892971878 0.817194086 0.832389418 0.808424463 227199501 arsc Corynebacterium striatum ATCC 6940 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium striatum; 1.02380492 0.974341739 0.949035149 0.989405268 0.915003106 0.992441276 0.898906903 0.953578505 0.986589397 0.957841271 0.93982383 0.926232006 0.873078903 0.948208844 0.860852255 0.911189843 1.001506941 1.030981226 372281953 vdh Oceanicola sp. S124 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola; 1.163347021 1.142114149 1.135734633 1.152342677 1.119697184 1.146912667 1.117366392 1.144050854 1.172556219 1.11721399 1.128011443 1.164997447 1.091510583 1.096968558 1.097704347 1.120632649 1.152283668 1.130237262 163742110 FBP_aldolase Phaeobacter gallaeciensis 2.10 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 1.126692372 1.123569686 1.082902866 1.112162823 1.080114325 1.120542295 1.053641315 1.089932651 1.079593652 1.067725966 1.082631305 1.076689099 1.070274989 1.105331178 1.036931706 1.089920013 1.13204879 1.101748988 192764308 nifh uncultured prokaryote Nitrogen Nitrogen fixation NA 0.954245604 0.941770382 1.051637713 0.968620124 0.971654251 0.929604683 0.956957878 0.935604741 0.975715376 0.929847814 0.967352714 0.921967884 0.858384773 0.867276483 0.913954056 0.852473919 0.990488395 0.947061168 134265838 narg Geobacillus thermodenitrificans NG80-2 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus;species:Geobacillus thermodenitrificans; 0.793179996 0.82594767 0.827395586 0.826359282 0.832542704 0.848949769 0.849898907 0.801924469 0.825297237 99030619 ppk uncultured bacterium Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria; 0.835080036 0.826357906 0.827835025 0.836617113 0.796470168 0.82585986 325961817 urec Arthrobacter phenanthrenivorans Sphe3 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter phenanthrenivorans; 0.766021038 0.796637193 149202059 nifh Roseovarius sp. TM1035 Nitrogen Nitrogen fixation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 0.76250711 0.827712827 0.814307409 0.808305593 0.821451199 0.820478565 324982946 ppx Kingella denitrificans ATCC 33394 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Kingella;species:Kingella denitrificans; 1.311477673 1.269177716 1.252687227 1.295765583 1.256878375 1.290089033 1.226733397 1.235676474 1.272132472 1.248325092 1.261776603 1.25576427 1.23391076 1.222976568 1.195357254 1.237610676 1.301007971 1.263852447 302525977 chitinase Streptomyces sp. AA4 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 0.96818143 0.966783205 0.952096798 1.008287486 0.921958678 0.946989096 0.932753192 0.938782036 0.972910799 0.964364548 0.928675593 0.950827436 0.917269307 0.923061187 0.868537168 0.915518436 0.973048064 0.943433889 90107585 sqr Rhodopseudomonas palustris BisB18 Sulfur Sulfide Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 0.881706934 0.856013706 0.881310667 0.89132371 0.803752356 0.830045991 0.849608729 0.91386226 0.845332866 0.892019703 0.874956483 0.890313494 0.809078888 0.808564064 260061648 amyA Robiginitalea biformata HTCC2501 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Robiginitalea;species:Robiginitalea biformata; 1.193807539 1.225458343 1.178525687 1.182015218 1.180867441 1.221684946 1.16915318 1.200850905 1.160823748 1.204034632 1.151030142 1.172795286 1.191762732 1.201899377 1.21023742 1.200009726 1.197098931 1.230575419 89275961 rubisco uncultured gamma proteobacterium Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 0.981557186 0.976264739 1.003942945 1.017808481 0.948815344 0.984407705 0.945342602 0.977933346 0.981912088 1.02844018 0.985995672 0.998122892 0.987913528 1.021008447 0.993026434 0.965906128 0.987578487 1.001847703 319804670 GAPDH_Calvin Sutterella wadsworthensis 3_1_45B Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Sutterellaceae;genus:Sutterella;species:Sutterella wadsworthensis; 0.77923926 0.79939531 0.783020635 0.818708679 311094750 ppx Lactobacillus oris PB013-T2-3 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus oris; 0.88378942 0.999043772 0.995663315 0.950554395 0.85695514 0.925100579 0.837689858 0.906000426 0.898862606 0.904096854 0.88635592 0.872259762 0.845987946 0.879074658 0.83175248 0.862739003 0.91426359 0.875015068 260220483 amyA Curvibacter putative symbiont of Hydra magnipapillata Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Curvibacter; 0.831656677 0.888274775 0.812578703 0.831526737 0.8695011 0.801796858 0.782496532 0.849600789 0.808559651 0.840471843 0.847697791 398809605 xylj Variovorax sp. CF313 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax; 0.90637619 0.954598252 0.924485902 0.934941218 0.921453949 0.917269307 0.896852729 0.906089662 0.888704354 0.88514354 0.899514475 0.906798496 0.927058011 0.911067183 0.8984172 0.900001355 0.931035492 0.951826539 302697575 xylanase Schizophyllum commune H4-8 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 1.170941946 1.125807948 1.154414689 1.172792241 1.153509812 1.182985417 1.157859001 1.173773024 1.14046573 1.142242439 1.157036878 1.151716331 1.1692893 1.12433478 1.1206334 1.141742953 1.19724985 1.148364257 77460235 arylest Pseudomonas fluorescens PfO-1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 1.277293113 1.280135089 1.267421562 1.262696856 1.237675924 1.251421985 1.214363518 1.247619303 1.257329844 1.231634235 1.246508961 1.2854767 1.246242899 1.208620148 1.20900854 1.220046662 1.264678207 1.230141488 296020516 acetylglucosaminidase Cellulomonas flavigena DSM 20109 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas;species:Cellulomonas flavigena; 1.30172333 1.252122797 1.20938483 1.244368066 1.195597476 1.228057221 1.214970336 1.232926452 1.331848634 1.220253164 1.189340388 1.237914479 1.162224851 1.18695528 1.186672509 1.178130609 1.24994144 1.262917728 407279404 nfsa_2 Rhodococcus sp. P14 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 1.028562598 1.054660819 1.047067443 1.086956741 1.068823812 1.038320368 1.081523319 1.051047728 1.02816049 1.004233039 1.052114137 1.035001764 1.019031354 1.032993629 1.010240004 1.030435314 1.038122019 1.028617811 189342180 mult_ring_12DiOx Novosphingobium sp. H25 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 1.24233809 1.19372578 1.215636303 1.242740577 1.177752516 1.260803975 1.210455913 1.232473128 1.206388556 1.195132321 1.193602837 1.191565705 1.180565291 1.197048824 1.170669701 1.2131874 1.267555144 1.190669038 383641488 xylc Streptomyces chartreusis NRRL 12338 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces chartreusis; 0.995550651 0.917416606 0.980734096 0.990424678 0.959479535 0.963541198 0.839309162 0.937269895 0.992504435 0.93049188 0.987071053 0.979540795 0.950589173 0.921712278 0.922403822 0.940639798 1.019645628 0.949012091 171060000 amyA Leptothrix cholodnii SP-6 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Leptothrix;species:Leptothrix cholodnii; 0.995500267 1.019632662 0.998266047 1.01385768 1.000286712 0.989944316 0.964270006 0.995968888 0.982419545 0.960703515 0.971381607 1.007502746 1.001322034 0.969677152 0.951342353 0.989068186 1.019061675 1.008021116 7592848 rubisco uncultured deep-sea autotrophic bacterium SBII-2 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria; 0.787638361 0.815026941 0.802913873 0.921780987 0.878888163 0.918993765 0.862703162 0.825538155 0.817187972 0.827446498 0.831039731 0.826750821 0.836594793 0.823898421 0.836732497 307630580 tehb Ferrimonas balearica DSM 9799 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Ferrimonadaceae;genus:Ferrimonas;species:Ferrimonas balearica; 0.924092097 0.923599252 0.901988636 0.928734294 0.873337145 0.903088542 0.87479187 0.899031488 0.88084493 0.909591496 0.875852499 0.894877694 0.826738573 0.888777473 0.840009747 0.899774593 0.895455907 0.928397651 359819538 catechol Mycobacterium rhodesiae NBB3 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 1.170117251 1.186391396 1.114085267 1.138579502 1.11121807 1.124080519 1.089505043 1.144760011 1.138528443 1.114590497 1.108846686 1.130921175 1.098341142 1.130258587 1.059500331 1.093856849 1.140855243 1.149102309 126707779 ben_bcla Sagittula stellata E-37 virulence NA NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 0.83578027 0.856190407 0.81872027 0.862972805 0.81866181 0.863539133 0.827336906 0.868550419 0.811055061 0.819255586 0.789970494 0.863485412 0.884207293 219544850 amyA Chloroflexus aggregans DSM 9485 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aggregans; 0.896224457 0.859572562 0.892758011 0.841414455 0.816778579 0.873589994 0.857663465 0.896965655 0.847786364 0.815179706 0.835222699 0.787917241 85824418 pgk Roseobacter sp. MED193 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 0.871637965 0.898748717 0.924839735 0.928021419 0.976784308 0.925531065 0.91803105 0.934912956 0.881539249 0.911731217 0.914427576 0.89592348 0.924807525 0.933391559 0.874958279 0.898970084 0.896674118 0.91218697 380509740 xyla Xanthomonas sacchari NCPPB 4393 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas sacchari; 0.801214749 0.814128636 0.801480696 0.81916966 0.794199154 0.802325391 0.82800522 0.793601575 0.807403839 23014994 arsc Magnetospirillum magnetotacticum MS-1 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum magnetotacticum; 0.948593674 0.955040106 0.975893337 0.973529522 0.926153206 0.969703452 0.974545906 0.939247893 0.961523064 0.957865441 0.901284832 0.983015527 0.86248544 0.928443135 0.865039727 0.929099714 0.947956665 0.975736142 407937241 phn Acidovorax sp. KKS102 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 1.464308411 1.404951273 1.474022908 1.397366331 1.424729043 1.388753442 1.36593076 1.355740999 1.401890665 1.450647137 1.426851444 1.411670967 1.408600797 1.431747123 1.3686223 1.391956245 1.43845428 1.409317756 269795848 rgl Sanguibacter keddieii DSM 10542 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Sanguibacteraceae;genus:Sanguibacter;species:Sanguibacter keddieii; 1.113037759 1.093538479 1.090363297 1.128589047 1.086339233 1.108546376 1.074004152 1.088532243 1.123869587 1.082221252 1.078257597 1.094885718 1.065352697 1.077061691 1.043627866 1.077990414 1.136706822 1.093844748 89512954 nifh uncultured nitrogen-fixing bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.926058785 0.867114116 0.782117018 364004626 urec Streptomyces sp. W007 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 0.926631831 0.92046687 0.965474438 0.95588171 0.876023899 0.946139634 0.898613782 0.911849673 0.949067268 0.911047108 0.903380722 0.923665603 0.892072159 0.889670542 0.877250741 0.909669269 0.920293165 0.932049882 28971842 xylm Sphingomonas sp. P2 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 0.901117484 0.888772639 0.897883807 0.884746398 0.831438459 0.933244712 0.840523172 0.890644452 0.888752318 0.915028786 0.885808644 0.836328608 0.823020272 0.928054408 0.858060188 0.874671916 0.909598396 0.924387127 82618403 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.879031755 0.810699953 0.817099794 0.841828077 0.831300253 0.817669832 0.812112077 0.819327871 0.874673774 0.843656035 0.848708944 0.858805218 0.855518262 0.859595361 296444580 chitinase Methylosinus trichosporium OB3b Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylocystaceae;genus:Methylosinus;species:Methylosinus trichosporium; 1.055674955 1.015735836 1.076427098 1.089361335 1.109451687 1.08034186 1.012931254 1.016839758 1.087401624 1.071836167 1.021261383 1.040076607 0.995526031 1.044504394 1.022678145 1.027557104 1.064759817 1.03468509 357213254 amyA Desulfosporosinus orientis DSM 765 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfosporosinus;species:Desulfosporosinus orientis; 0.864137701 0.883923742 0.861448035 0.865836842 0.892957441 0.871054242 0.847069046 0.885609165 0.883599529 0.855740525 0.898551954 0.894927848 0.859897768 0.856388903 0.954009638 0.843819176 0.909161112 0.881767906 398377865 cmci Rhizobium sp. AP16 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 1.246246787 1.226641075 1.230339984 1.21149137 1.172738599 1.228634902 1.170502064 1.201877254 1.235326501 1.206575714 1.181933129 1.244391073 1.167990156 1.151137704 1.150263077 1.198062027 1.252297376 1.236931665 254509987 ppx Rhodobacteraceae bacterium KLH11 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 0.927731081 0.91906941 0.931783496 0.933905145 0.8812271 0.902551695 0.878237811 0.908115907 0.914551352 0.935698076 0.916566613 0.892457871 0.874228196 0.884515878 0.90091223 0.926355335 0.959858933 0.913166377 308187936 cysI Pantoea vagans C9-1 Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea;species:Pantoea vagans; 0.916107301 0.983696427 0.934011705 0.947167343 0.847913965 0.95526008 0.945073256 0.943605131 0.969370579 0.904611271 0.872415223 0.940892299 0.826185974 0.873336338 0.823481104 0.827631884 0.939121478 0.966539646 21530832 mcra uncultured methanogenic archaeon Carbon Cycling Methane Methanogenesis superkingdom:Archaea;phylum:Euryarchaeota; 0.952130947 0.958100049 0.968363379 0.94188381 0.936809703 0.996642818 0.947372675 0.915456347 0.936998942 0.998729167 1.021576729 0.941909515 0.939883549 1.017490719 0.985412696 0.957098398 0.947976671 1.025472227 116620372 pme Candidatus Solibacter usitatus Ellin6076 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 0.840959445 0.784157032 0.952861052 0.851693554 0.966392528 1.049798146 0.879215613 0.878031193 1.003038346 0.941420924 0.91826097 0.964435852 1.058289827 1.123905956 0.993195056 0.952801657 1.042321678 115423322 PRI Bordetella avium 197N Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella avium; 0.821481069 0.807499888 0.810866726 0.830474977 0.821683616 0.804757661 0.856721827 40068453 protease_serine_fungi Leptosphaeria maculans Carbon Cycling Carbon degradation protein superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Leptosphaeriaceae;genus:Leptosphaeria; 1.163934748 1.15956545 1.153390083 1.160307723 1.149500316 1.214082026 1.14294158 1.194963319 1.114757028 1.140173474 1.122873862 1.156538272 1.170203018 1.118755484 1.122727086 1.115632725 1.203737205 1.146230778 380879318 pgk Thiorhodovibrio sp. 970 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiorhodovibrio; 1.113185812 1.08517887 1.131790815 1.112046136 1.082029067 1.087293235 1.089046349 1.058709605 1.097138852 1.090473402 1.073380849 1.072682066 1.048701558 1.028211254 1.052457179 1.080472389 1.141633722 1.088766353 151563211 ben_bcla Ochrobactrum anthropi ATCC 49188 virulence NA NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum anthropi; 0.873489665 0.887900625 0.962322326 0.849491943 0.968976742 0.934004821 0.884005553 0.818435544 0.941733748 0.878830881 0.861490391 0.89995507 0.909588985 0.880214735 0.858780746 0.864100603 0.914061105 0.914032691 126728392 fthfs Sagittula stellata E-37 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 0.937414245 0.967389821 0.941738825 1.015796036 0.986409451 0.967223978 0.946933586 0.962583323 0.95073352 0.969417803 0.957760949 0.994093216 0.958429735 0.971477551 1.023583899 0.973887506 0.907929388 0.988881792 53803583 sqr Methylococcus capsulatus str. Bath Sulfur Sulfide Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylococcus;species:Methylococcus capsulatus; 0.929124822 0.925191509 0.863838887 0.905514705 0.862733317 0.872148503 0.825502477 0.860390799 0.867143798 0.856973923 0.865045133 0.842751767 0.903499908 0.921396999 307636387 chitinase Vibrio cholerae Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 0.870447373 0.91104781 0.854484628 0.95541782 0.859700033 0.889313718 0.906653888 0.847359218 0.90502162 0.806082101 0.855814316 0.842017752 0.910094629 0.916219423 357538769 arsc Lactobacillus rhamnosus R0011 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus rhamnosus; 1.32952865 1.294071791 1.313395015 1.316393002 1.318501564 1.320657975 1.313334131 1.322756098 1.294831905 1.290214307 1.324879629 1.294277806 1.268358028 1.262368984 1.247490742 1.260894357 1.348451397 1.256872034 240102881 codh Thermococcus gammatolerans EJ3 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Thermococcus;species:Thermococcus gammatolerans; 1.140138646 1.191872605 1.16962962 1.182228547 1.176609751 1.209778591 1.168327091 1.160714299 1.173916336 1.180926233 1.185216581 1.182051492 1.157604401 1.13647488 1.1337271 1.153634297 1.189351545 1.179663116 319652132 Sir Bacillus sp. 2_A_57_CT2 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 0.954399902 0.925123437 0.94490042 0.884242791 0.926239332 0.946465738 0.853969052 0.922157029 0.962964302 0.911801538 0.930887892 0.804685256 1.086147454 0.866902925 0.859163463 0.866152139 0.929234958 374370275 FBPase Cupriavidus basilensis OR16 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus basilensis; 0.834111793 0.877178378 0.831956719 0.802122351 0.822748574 0.828548425 0.821763566 0.801962933 0.849088307 0.86311928 0.813034576 0.80578489 0.823413632 0.799523573 0.800366709 0.851360733 0.880633048 219950412 exaa(moxf) Methylobacterium nodulans ORS 2060 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 0.850154832 0.845491928 0.877074585 0.798565168 0.804033691 0.818783113 0.84421134 0.840329398 0.876523884 87198534 chnb Novosphingobium aromaticivorans DSM 12444 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium aromaticivorans; 1.296498886 1.278271495 1.275006044 1.279323749 1.265363572 1.324486688 1.267019271 1.275354093 1.27582515 1.290725504 1.261129186 1.300198735 1.241241161 1.281636781 1.229926788 1.263140583 1.289006553 1.301353277 320009107 adpb Streptomyces flavogriseus ATCC 33331 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces flavogriseus; 0.924429219 0.881937358 0.886931887 0.875051448 0.884827271 0.897378006 0.925437401 0.864426971 0.919330532 0.878590576 0.926644068 0.886020042 0.874676819 0.885846687 0.846779921 0.895644485 0.868270351 0.933238264 99030482 ppk uncultured bacterium Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria; 1.079485096 1.064977989 1.041935389 1.070634058 1.016188439 1.085863872 1.017951553 1.017273276 1.065326092 1.033506521 1.0422207 1.033660236 1.052820329 1.021668187 0.999660273 1.036943155 1.095007438 1.050516293 295441282 SoxC Burkholderia sp. CCGE1002 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 0.838118122 0.842900644 0.84058317 0.840749763 0.848559119 0.840013328 0.871962522 0.855894839 0.867480859 0.855142138 0.817360649 0.816524235 0.824591503 0.849748665 90419896 arsc Aurantimonas manganoxydans SI85-9A1 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Aurantimonas;species:Aurantimonas manganoxydans; 1.478213387 1.422885026 1.433721182 1.447778284 1.407186946 1.449637817 1.406758129 1.428511032 1.424499798 1.405858196 1.422749281 1.421967763 1.390745142 1.366372088 1.385440443 1.404801921 1.453404046 1.402846754 49062 nhh Rhodococcus rhodochrous Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 0.801278677 0.837518499 0.803762193 0.777796504 0.794103772 110817069 xylj Rhodococcus sp. RHA1 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 1.184387755 1.226822245 1.191587305 1.189330412 1.170992782 1.246551839 1.186809756 1.170230417 1.145841718 1.176577115 1.177227483 1.167131302 1.122788726 1.151405816 1.082152408 1.099642734 1.173120344 1.189193351 24421257 nirs uncultured organism Nitrogen Denitrification NA 0.873444681 0.911017097 0.901676307 0.875645927 0.863195541 0.895970865 0.884534572 0.872995014 0.84428102 0.851577047 0.842202884 0.884916078 0.8374641 0.869089984 0.830496279 0.810769663 0.877303007 0.915303013 307151430 amyA Cyanothece sp. PCC 7822 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 0.843610979 0.877410131 0.86633725 0.899377034 0.902391135 0.848737983 0.892422323 0.873106361 0.875317886 0.858826818 0.900784463 0.874237242 0.903553726 0.850891333 0.853799364 0.858012666 0.891902458 170935189 por_DiC4HB Thermoproteus neutrophilus V24Sta Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum neutrophilum; 0.907174696 0.912150627 0.887680586 0.948676743 0.892793449 0.918180145 0.927210963 0.909791035 0.909783515 0.911213954 0.829038855 0.955140068 0.840145725 0.806905827 0.83986993 0.87562054 0.895700052 0.89441232 365855718 vdh Acetobacteraceae bacterium AT-5844 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae; 0.863194294 0.842443465 0.816602366 0.859908445 0.848869373 0.809543211 0.838281511 0.809117602 0.804854392 0.844880444 0.853922353 0.821384419 0.831551975 0.860193096 0.857390802 262274185 phn Grimontia hollisae CIP 101886 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Grimontia;species:Grimontia hollisae; 0.862635652 0.812194921 0.930500545 0.813206357 0.827172362 0.845831162 0.826029441 0.817561791 0.82273231 0.804790173 0.861364337 0.810248747 354616705 ppx Saccharomonospora paurometabolica YIM 90007 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora paurometabolica; 1.088273838 1.089746802 1.051746619 1.110265062 1.114799525 1.108559158 1.088357243 1.026998439 1.092819242 1.0587737 1.084415968 1.113369943 1.071335125 1.015905396 1.027189339 1.021587871 1.102963512 1.048797579 38569318 rd Dehalococcoides sp. FL2 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 0.842949855 0.849245972 0.860562383 0.80656427 0.834822967 0.804646146 0.823116313 0.846385314 0.822586772 0.852255794 0.853220625 121707620 glucoamylase Aspergillus clavatus NRRL 1 Carbon Cycling Carbon degradation Starch superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 1.039150713 0.979555597 0.999656844 1.019655592 0.984412947 1.029827638 0.987319007 1.034650192 1.011731201 0.997316117 1.007809612 1.010323887 0.956818808 0.982775009 0.947061549 1.042057821 1.007719251 0.996380423 374309429 amyA Granulicella mallensis MP5ACTX8 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Granulicella;species:Granulicella mallensis; 0.839164904 0.818583005 0.811175369 0.834879305 0.845298097 0.857236481 0.803962343 0.790194097 0.817468638 213022511 nrfa Salmonella enterica subsp. enterica serovar Typhi str. 404ty Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 0.986341308 0.983688918 0.977506249 0.968968797 0.924018192 0.976456055 0.926056969 0.969386398 0.96552636 0.978762734 0.90407925 1.010776964 0.863543714 1.024796152 0.918031139 0.949149376 1.018243932 1.031359976 126737564 dmdA Roseobacter sp. SK209-2-6 Sulfur DMSP degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 0.921410709 0.919832162 0.926714729 0.994758327 0.944298477 0.925743628 0.946961127 0.953839661 0.972544791 0.907008591 0.89759835 0.926506531 0.902286636 0.814847259 0.845679426 0.90964755 0.914868191 0.908122061 312983963 amyA Lactobacillus crispatus CTV-05 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus crispatus; 0.851273611 0.811728553 0.866048878 0.876337219 0.897708551 0.861900696 0.904236985 0.900569784 0.871969166 0.867057757 0.919514699 0.921291582 0.855044977 0.854929232 0.862272845 0.877561116 0.842898525 0.886018443 377560051 ppk Gordonia otitidis NBRC 100426 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia otitidis; 1.004045096 1.055386741 1.019647664 1.048974946 1.026260822 1.051588862 1.007430912 1.032684487 0.993245744 0.982086307 1.000417044 1.029098037 1.023460832 0.989939888 0.991325667 0.980541759 1.034789662 1.012023083 365891348 mdlc Bradyrhizobium sp. STM 3809 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 1.141276507 1.146990873 1.128449595 1.102074564 1.099413473 1.120406144 1.098787451 1.088935822 1.128322603 1.134334707 1.120603155 1.117807781 1.068100471 1.075846476 1.055038443 1.100575546 1.14003 1.138587064 359836333 mannanase Actinoplanes sp. SE50/110 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes; 0.950408011 0.843913602 0.898428277 0.93970627 0.930620869 0.913470598 0.839094366 0.942190135 0.88874924 0.989574055 0.908400915 0.877771246 0.890574102 0.899387039 0.846430244 0.958365285 0.905811975 389742511 badh Stereum hirsutum FP-91666 SS1 Organic Remediation Aromatics Other aromatics superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Russulales;family:Stereaceae;genus:Stereum;species:Stereum hirsutum; 1.067685702 1.057850618 0.995565015 1.120577279 0.98896326 1.05896866 1.012195853 1.06656651 1.064470433 1.030590267 1.000327148 1.031093946 0.972890428 0.994560116 0.977668271 1.03419539 1.089232241 1.052298989 190401659 amoa uncultured ammonia-oxidizing bacterium Nitrogen Nitrification NA superkingdom:Bacteria; 1.029866311 0.98075792 1.008305075 1.057630728 0.999888315 0.984735401 1.006969475 1.095890582 1.04552549 1.011073712 0.999045379 1.022893967 0.969771643 0.965383254 0.986397962 0.980162476 1.033439405 1.002736262 111073745 endochitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 0.885171993 0.853410514 0.868141473 0.905775491 0.854344362 0.867610224 0.831343311 0.840731351 0.897284066 0.923778928 0.882709762 0.852872031 0.847173213 0.877933945 0.906037032 0.88235659 0.869127688 91802028 soxY Nitrobacter hamburgensis X14 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter hamburgensis; 1.698218211 1.663301698 1.657391114 1.642018947 1.61935312 1.680546284 1.624076827 1.649225254 1.633758271 1.647782911 1.636301595 1.66528501 1.601266764 1.608398805 1.626181506 1.639930723 1.650013586 1.640823932 269216321 ppk Slackia exigua ATCC 700122 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Slackia;species:Slackia exigua; 1.256452662 1.223373374 1.204637147 1.22179882 1.198951646 1.254203558 1.173221091 1.22236876 1.199244097 1.187778546 1.21375152 1.214876863 1.176319386 1.172728068 1.120940425 1.160577792 1.228528913 1.210457692 158521014 APS_AprB Desulfococcus oleovorans Hxd3 Sulfur adenylylsulfate reductase NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfococcus;species:Desulfococcus oleovorans; 0.79275849 0.878606073 0.790085829 0.846567077 0.819610313 0.823608141 27380885 sqr Bradyrhizobium japonicum USDA 110 Sulfur Sulfide Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium diazoefficiens; 1.263889736 1.212564999 1.205885597 1.291253045 1.208344674 1.237238065 1.1994548 1.217179456 1.171726251 1.204828244 1.22274376 1.204659416 1.149961103 1.156012918 1.141025205 1.183330103 1.218128976 1.238288714 184198210 alkk Burkholderia phymatum STM815 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 1.045321923 1.005689819 0.983887136 1.046089857 0.967752156 1.017051015 1.00750497 1.00671235 1.028268973 1.014574156 1.022937406 1.00496111 0.970963291 0.984120339 0.937920303 1.001227735 1.025529015 1.029435349 386019182 amyA Pseudomonas stutzeri DSM 4166 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 0.969110295 0.964724416 0.955483274 0.961151281 0.945694931 0.935549137 0.952156573 0.946386807 0.946388189 0.937156056 0.960732686 0.902836098 0.853853281 0.868395316 0.863488554 0.82199353 0.959137881 0.963466779 302547823 amyA Streptomyces hygroscopicus ATCC 53653 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces himastatinicus; 1.270473304 1.218990877 1.253048252 1.253512692 1.249907355 1.271208791 1.251520117 1.268083925 1.261579976 1.229413785 1.236004635 1.228501735 1.205601993 1.205683217 1.188655663 1.186312575 1.253639503 1.216403278 323374644 xylj Acidovorax avenae subsp. avenae ATCC 19860 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax avenae; 1.18648858 1.187801952 1.198970426 1.191954968 1.203839555 1.20600332 1.204731075 1.19815852 1.206414044 1.209989377 1.231940014 1.202470018 1.186030542 1.177588218 1.193223015 1.192401855 1.202152168 1.199679395 10863143 nifh marine stromatolite eubacterium HB(0697) A101A Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.978832479 1.025766098 0.930448188 0.992790809 0.917366507 1.01279137 0.925231726 0.934176973 0.948497137 0.954160754 0.9405953 0.9422085 0.890059229 0.947674031 0.886209906 0.897731756 1.011741489 1.022812387 285859102 cyma Pseudomonas chlororaphis subsp. aureofaciens Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas chlororaphis; 1.035360127 0.948906495 1.020834446 1.014566169 0.910078273 0.949608119 0.923409966 0.967914328 1.00458059 0.994218093 0.961586614 0.992398617 0.934501969 0.958323964 0.930230572 0.912052287 1.02211744 0.988245265 94471327 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.862710895 0.830988274 0.857127031 0.840063871 0.853679948 0.849246559 0.849377464 0.864297035 0.848410813 0.856189138 0.835834199 0.876218421 0.801325723 0.794479306 0.809171555 0.884134909 0.881996356 83949933 arsc Roseovarius nubinhibens ISM Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius;species:Roseovarius nubinhibens; 0.947135949 0.976737796 0.962910671 1.040640456 1.054959129 1.013735214 0.984870381 0.997914073 0.998767388 1.007261924 1.000433137 1.061221072 0.95452465 0.944574364 0.87845835 0.922599053 0.94255252 0.954209131 422314027 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.954490382 0.928777567 0.932480881 0.99974151 0.921566318 0.949039311 0.903855875 0.956270054 0.925836283 0.898002547 0.927895835 0.926417196 0.868907109 0.850203884 0.877324199 0.851095799 0.974749214 0.919090818 323311141 cda Vibrio brasiliensis LMG 20546 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio brasiliensis; 0.927213368 0.939563687 0.927502046 0.97030619 0.932921356 0.949414187 0.892706126 0.927560527 0.966388772 0.92364559 0.918039471 0.924645529 0.873196102 0.85770061 0.916053395 0.877495306 0.952582245 0.950420363 87282693 Sir Synechococcus sp. WH 5701 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 0.783270611 0.832093054 0.81063891 0.789464325 0.818270436 0.783406506 0.80300352 0.825678524 0.844922332 0.781324738 0.794474501 0.833989148 0.837482497 0.826171352 301335089 merb Pseudomonas putida Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.970082519 0.976372814 0.915757634 0.953631382 0.914705184 0.949830489 0.86256702 0.877299214 0.910064562 0.941237536 0.903327619 0.92707759 0.921838026 0.907257212 0.893330063 0.918724207 0.966480008 0.999210337 255295470 nirb Rothia mucilaginosa ATCC 25296 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Rothia;species:Rothia mucilaginosa; 1.065633169 1.101111038 1.079715271 1.076831352 1.050398417 1.094230963 1.076934567 1.088790894 1.030698456 1.033693506 1.036322749 1.051892585 1.059962968 1.000534481 1.057992363 0.976677976 1.082285971 1.355431524 325980903 pgk Nitrosomonas sp. AL212 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas; 0.769242835 0.78276319 0.837371165 0.830074102 359415281 amyA Clostridium sp. DL-VIII Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium; 0.93760412 0.968586809 0.991245783 0.948570417 0.909608605 0.974560532 0.928453245 1.01326523 0.957560934 1.009017871 0.956180653 1.073390472 0.951609815 0.961964198 0.906792971 0.967030315 0.98697473 0.976023957 83749598 one_ring_12diox Ralstonia solanacearum UW551 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 0.889018322 0.892622581 0.828895081 0.86611624 1.03213627 0.910545657 0.85191649 0.804656526 1.086308752 0.898249952 0.808562108 0.832266796 0.870693448 0.888671805 83596378 ccmL Roseburia inulinivorans DSM 16841 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Roseburia;species:Roseburia inulinivorans; 0.897311163 0.798368069 0.819862459 0.88269212 0.9784365 0.816013175 0.818422284 0.928672187 0.874242887 0.838984239 0.888609485 0.835044909 0.834960977 0.832145026 0.822715936 0.836919686 374376180 pme Niabella soli DSM 19437 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;genus:Niabella;species:Niabella soli; 1.520542343 1.480808685 1.486087295 1.497173931 1.4658475 1.484633283 1.451342743 1.479467272 1.484265844 1.451984995 1.457967493 1.489827322 1.441581625 1.400959425 1.450137394 1.449546642 1.486652171 1.430564728 344690008 rubisco uncultured bacterium Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria; 0.840090741 0.798805107 0.869972669 0.808656331 0.814097458 0.822049335 0.792272576 0.832902578 0.812052082 0.826905774 0.859240841 0.86844913 377567236 one_ring_12diox Gordonia sputi NBRC 100414 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia sputi; 1.041911632 1.089876437 1.019451205 1.020834154 1.053358405 1.072441589 0.980000221 0.996088785 1.007912722 1.085891517 1.009969596 1.023060648 1.005646548 1.037268775 0.994114442 1.017883222 1.030576528 1.070171368 357029281 ppx Mesorhizobium amorphae CCNWGS0123 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium amorphae; 1.131351816 1.157242742 1.144561735 1.108075925 1.117480103 1.171905354 1.084446155 1.113800682 1.129451126 1.115625066 1.138720333 1.112425923 1.107589213 1.092478834 1.090720842 1.144815405 1.142347383 1.15278802 78063343 one_ring_23diox Burkholderia sp. 383 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 1.014273962 0.838400731 0.803908558 0.784198817 0.850764686 0.844493421 0.864381228 0.842346339 0.767482253 0.830294711 0.843379777 0.839119386 0.856606452 0.794928721 0.853070861 0.856661545 0.839317905 0.80863841 384147772 amyA Amycolatopsis mediterranei S699 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 1.172622372 1.154340545 1.120181469 1.147009722 1.145470995 1.127174186 1.103178024 1.148341685 1.141111101 1.096319713 1.099558946 1.199360812 1.095929501 1.105147977 1.102047754 1.143858251 1.132601865 1.154608184 74484304 cyma Pseudomonas putida Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 1.017657741 1.035237157 1.047598718 1.061446343 1.03005252 1.039235422 0.993485451 1.023005678 1.045296049 0.98239266 0.987218901 1.02578331 0.989091784 0.988157041 0.964911296 1.007348143 1.025441622 1.029139122 334102753 pcpe Sphingobium chlorophenolicum L-1 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium;species:Sphingobium chlorophenolicum; 1.134696449 1.157259194 1.112508027 1.120055391 1.144118453 1.152481588 1.102538696 1.136038239 1.09013876 1.108792782 1.127580578 1.100877232 1.086190601 1.100713914 1.069036066 1.094835995 1.130378798 1.139126984 311284201 narg Pseudomonas fluorescens WH6 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 1.229351459 1.211176152 1.144048092 1.182843241 1.14275735 1.201309317 1.165683198 1.211500569 1.176520606 1.205909326 1.155980424 1.197181116 1.132301156 1.174126872 1.092654494 1.148169961 1.197336993 1.20239404 124266776 arsc Methylibium petroleiphilum PM1 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 0.861232878 0.960109653 0.821590829 0.910305777 0.922923815 0.855263968 0.854658449 0.852110129 0.852659096 0.818980503 0.85636845 0.835344034 0.804594213 0.84103678 0.860132533 0.844197067 219939022 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.027292801 1.000628229 1.017100687 1.045507586 1.03954317 0.984157607 1.024339069 1.041112999 1.013303845 0.984053334 1.005815225 1.028599624 0.996165584 0.958397143 0.986307999 0.988546674 1.081886519 1.018207262 118439326 B_lactamase_A Stappia aggregata IAM 12614 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 1.013484686 0.984187171 0.935520665 0.981577424 0.913623043 0.933450728 0.929065843 0.955634452 0.968303696 0.951569103 0.921860952 0.949352929 0.947582532 0.942295538 0.945618322 0.985277426 0.946252352 17385101 narg Enterobacter sp. Lgg10.2 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 0.988001662 0.993513559 0.968699964 0.965614951 0.939737593 0.958684173 0.964108776 0.898917758 0.967869598 1.013692944 0.97651882 0.995834565 0.913527135 0.953545321 0.926195792 0.946973376 0.910820737 0.979882232 212691094 mannanase Bacteroides dorei DSM 17855 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides dorei; 0.838986765 0.853881356 0.841705516 0.796946742 0.837380517 0.843846125 367034295 phenol_oxidase Myceliophthora thermophila ATCC 42464 Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Myceliophthora;species:Myceliophthora thermophila; 1.017281492 0.96030429 0.990912954 0.980016797 0.959137981 0.998784942 0.977113246 0.943973089 0.983334461 1.050587336 0.995883542 0.977164687 0.988219184 1.064034028 1.005572843 0.950604657 0.946328923 0.968898012 387969037 catechol_b Pseudomonas stutzeri TS44 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 0.806494804 0.787283434 0.867164954 0.824393757 0.836207535 299132901 mer Afipia sp. 1NLS2 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Afipia; 0.897273117 0.896285103 0.845441291 0.843496943 0.860004128 0.853736279 0.860599258 0.791084632 0.815431335 0.871400416 0.840072358 0.825290507 0.858204063 66967048 xyla Arthrobacter sp. FB24 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 0.848251484 0.913895092 0.875861411 0.883598907 0.84463339 0.896871545 0.833945951 0.876895825 0.834724231 0.869333057 0.882842984 0.829971363 0.823883277 0.882814943 0.917294083 222452494 nosz Halorubrum lacusprofundi ATCC 49239 Nitrogen Denitrification NA superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halorubrum;species:Halorubrum lacusprofundi; 0.925999716 0.909089688 0.897247307 0.926114596 0.86392156 0.857192498 0.858193356 0.880924882 0.898390053 0.886104226 0.865467128 0.856835556 0.903611703 0.869449231 0.873862591 0.909752633 0.930075199 125623598 amyA Lactococcus lactis subsp. cremoris MG1363 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Lactococcus;species:Lactococcus lactis; 0.81728003 0.796928756 0.819316066 0.809564953 0.802665093 0.836186571 302413557 lactase_fungi Verticillium albo-atrum VaMs.102 Carbon Cycling Carbon degradation Lactose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticillium;species:Verticillium alfalfae; 1.000049661 0.98272886 0.99105294 0.988441216 0.91322799 0.951054152 0.966775714 0.884062906 0.903434702 0.940017863 0.900556957 0.960623788 0.944895441 365425315 fccab Bradyrhizobium sp. STM 3843 Sulfur Sulfide Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.783205651 0.820911466 374608695 amyA Mycobacterium tusciae JS617 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tusciae; 0.827566129 0.834785421 0.856765041 0.839596027 0.796770824 0.878600885 0.839315387 0.866431211 349785895 cysJ Thermobacillus composti KWC4 Sulfur Reduction NA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Thermobacillus;species:Thermobacillus composti; 0.843125492 0.812894959 0.794864003 0.838935359 0.838647204 0.841127638 0.801082914 291513576 amyA Alistipes shahii WAL 8301 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Rikenellaceae;genus:Alistipes;species:Alistipes shahii; 0.882103701 0.942626173 0.856008235 0.915785497 0.842418418 0.913762677 0.88903327 0.850565693 0.882683355 0.858190427 0.920664625 0.92846574 171913717 atzb Verrucomicrobium spinosum DSM 4136 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobiaceae;genus:Verrucomicrobium;species:Verrucomicrobium spinosum; 0.819429636 0.899041606 0.813357473 0.8299021 0.81407001 0.85451975 0.838084688 0.900430111 0.851924394 0.829676148 0.843873074 99080402 hbh Silicibacter sp. TM1040 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 1.227556313 1.228687937 1.168683767 1.215840609 1.158495446 1.213811617 1.129510501 1.154110844 1.158602386 1.17206994 1.155996598 1.149532247 1.130149905 1.15221509 1.127861748 1.168723734 1.202360375 1.21916343 12661158 endochitinase Cellulomonas sp. GM13 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas; 0.822261407 0.928207054 0.812894575 0.854647511 0.828630835 0.820540681 0.832504585 0.81760092 0.856397764 0.877741253 145046536 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.821642985 0.865274441 0.877668327 0.861356798 145596104 xyla Salinispora tropica CNB-440 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora tropica; 0.998077255 1.006711529 0.946247699 1.024632516 0.940129078 0.995088752 0.96399396 0.968336554 0.984850773 0.98295194 1.000424348 0.979901094 0.948868197 0.993096728 0.933051505 0.938428371 1.008529263 0.989293278 347532325 ara Roseburia hominis A2-183 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Roseburia;species:Roseburia hominis; 0.834542502 0.83377937 0.828159863 0.781279384 0.819329132 0.863336209 0.808059903 0.817105812 0.847002734 0.850427324 0.816863127 0.833456416 0.909265917 0.808681144 0.828881453 0.816962818 0.86404032 157083806 pme Citrobacter koseri ATCC BAA-895 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter koseri; 0.810378046 0.864257052 0.807687099 0.801722409 0.816409765 0.809434128 0.827756767 0.852510127 0.796249159 0.814241444 0.802065348 0.859253585 0.809998264 0.844097926 0.854398399 90417852 SoxC Aurantimonas manganoxydans SI85-9A1 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Aurantimonas;species:Aurantimonas manganoxydans; 1.038464701 0.986387397 0.976755945 0.987977768 0.976638057 0.970936875 0.979471714 0.960858326 0.983342086 0.987360031 1.06791782 0.939747455 0.908309232 0.932762166 1.003963249 0.929573875 0.955057682 1.015564275 343927723 narg Gordonia alkanivorans NBRC 16433 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia alkanivorans; 0.883115617 0.929175827 0.870854474 0.923203863 0.852163845 0.899287489 0.879876474 0.832225788 0.886893356 0.85083713 0.827526501 0.8582652 0.869363924 0.89800225 0.842461502 0.871264698 0.911563048 0.959397757 192360184 pme Cellvibrio japonicus Ueda107 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio;species:Cellvibrio japonicus; 0.81005411 0.855681824 1.114980734 0.802784601 1.014403777 0.827651611 0.881361633 0.818149798 1.103194538 0.803287366 0.796230777 0.840220113 239800287 exaa(moxf) Variovorax paradoxus S110 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 0.983239235 1.006383996 1.012973678 1.030765503 1.020629782 1.019570028 1.022388909 1.029012716 0.978963718 0.972800642 1.035139138 1.010414807 0.971367598 0.942652153 0.939011132 0.934587563 1.018752663 1.004479679 343924809 bphd Gordonia alkanivorans NBRC 16433 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia alkanivorans; 0.961605893 0.936066169 0.937928981 1.000664603 0.938244917 0.93523747 0.891731289 0.900392968 0.965050397 0.916392261 0.874274075 0.940181529 0.900393729 0.905957299 0.885730228 0.908854632 0.967188356 0.934755486 373551561 urec Mycobacterium tusciae JS617 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tusciae; 1.235702241 1.190593311 1.157785749 1.247941706 1.178309373 1.16625773 1.208328602 1.226742583 1.282648453 1.176813061 1.164151462 1.201946679 1.151965989 1.12476376 1.123091167 1.131348051 1.19081568 1.167867541 206688153 rd Rhodobacterales bacterium Y4I Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 1.072318837 1.070801208 1.085000698 1.060568347 1.04605544 1.044176944 1.051755113 0.983914932 1.117193826 0.991528447 1.046296987 1.074299724 1.036657311 0.974614968 0.993083927 1.025297405 1.106426886 1.078249705 339502250 xyla Roseobacter litoralis Och 149 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter litoralis; 0.910162587 0.922058217 0.906900238 0.960190644 0.941967476 0.856319543 0.929377482 0.924056133 0.898863927 0.831272172 0.887572269 0.850591785 0.874552376 0.861619759 0.867233589 0.939640321 0.963551279 110285898 poba Mesorhizobium sp. BNC1 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 0.955302548 0.934607913 0.965810356 0.868673975 0.908305778 0.870548556 0.843305089 0.822599546 0.846144365 0.904056737 0.856442581 0.881381599 0.835391855 0.841521761 0.833151605 0.903888753 0.886669789 258591542 narg Candidatus Methylomirabilis oxyfera Nitrogen Denitrification NA superkingdom:Bacteria;genus:Candidatus Methylomirabilis; 0.855229543 0.871648061 0.855826191 0.877421574 0.810264235 0.844370114 0.810351273 0.847813803 0.835352587 0.84347836 0.806019873 0.798845168 0.856904245 385681787 linb Amycolatopsis sp. ATCC 39116 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis; 1.295827654 1.30249117 1.298896759 1.271475829 1.277408824 1.309465948 1.268281203 1.249983975 1.243482962 1.258802153 1.276230889 1.28762445 1.264695671 1.26191248 1.24528298 1.249695306 1.302224103 1.263094877 308176236 cmci Arthrobacter arilaitensis Re117 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter arilaitensis; 0.910284951 0.902679046 0.830127369 0.868215167 0.827397155 0.849296443 0.796010946 0.874744997 0.891286137 0.893964648 0.815989855 0.855014827 0.884375286 0.906161619 223962498 amyA Holdemania filiformis DSM 12042 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Erysipelotrichi;order:Erysipelotrichales;family:Erysipelotrichaceae;genus:Holdemania;species:Holdemania filiformis; 1.401276987 1.355372859 1.363350616 1.376362848 1.354018805 1.32183708 1.34294998 1.349133003 1.359179405 1.363010569 1.357289482 1.381681157 1.3488943 1.30463243 1.311502801 1.330331188 1.362206208 1.338479432 296022690 rgl Cellulomonas flavigena DSM 20109 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas;species:Cellulomonas flavigena; 1.310245345 1.313839828 1.25345673 1.301280122 1.254065757 1.31470687 1.256207294 1.286704106 1.281058346 1.269473425 1.265426467 1.262133233 1.224395559 1.248888096 1.238210106 1.251316542 1.295150667 1.287309575 364505603 hzsa uncultured anaerobic ammonium-oxidizing bacterium Nitrogen Anammox NA superkingdom:Bacteria; 0.864035788 0.870725849 0.890580087 0.888937832 0.819242616 0.863212413 0.860933572 0.813538944 0.869937261 0.833031208 0.966638838 0.900982604 0.832498664 0.901395559 0.891059881 0.882619371 67524751 cutinase Aspergillus nidulans FGSC A4 Carbon Cycling Carbon degradation Cutin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 1.071361961 1.030865125 1.019512232 1.059479538 1.096513778 1.06985659 0.99331064 1.022821419 1.025450797 1.035426155 1.005711239 1.026650606 1.04048847 0.996287108 0.972931433 0.978432971 1.082499287 1.04562195 208605290 hzo Candidatus Scalindua sp. enrichment culture clone HZO10 Nitrogen Anammox NA superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales; 0.876955884 0.895135946 0.858456009 0.879686734 0.87256388 0.865967531 0.8919728 0.891011747 0.824253743 0.847312953 0.910765432 0.870151331 0.872043364 0.858333248 0.870439691 0.884981993 0.858097708 0.869130595 156868874 ara Clostridium leptum DSM 753 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium leptum; 1.122785415 1.175332709 1.114611168 1.136008856 1.125307142 1.182189288 1.115494154 1.122903011 1.135762953 1.126409801 1.109149565 1.125338335 1.108987166 1.12166171 1.096136036 1.10798901 1.133225788 1.152125043 77166331 urec Nitrosococcus oceani ATCC 19707 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Nitrosococcus;species:Nitrosococcus oceani; 0.884625406 0.825708999 0.84867217 0.794019795 0.821423676 0.82727035 0.864750991 0.82013469 0.854829971 0.836012472 0.814689852 0.860546239 0.769042384 0.840543985 375147616 mannanase Niastella koreensis GR20-10 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;genus:Niastella;species:Niastella koreensis; 1.123211184 1.12585262 1.065829192 1.129239231 1.034944361 1.116105267 1.07591091 1.056530509 1.089686874 1.091494501 1.071993768 1.075101339 1.045374297 1.059043426 1.001284606 1.077972824 1.137946313 1.12140147 18461106 phenol_oxidase Lentinula edodes Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Marasmiaceae;genus:Lentinula; 0.930691847 0.937236087 0.940779758 0.948033351 0.865798946 0.882528799 0.878969336 0.898036383 0.932125683 0.897785858 0.871743633 0.913327316 0.888175706 0.841452806 0.850246162 0.897278633 0.923888001 0.915542428 167836982 atzb Burkholderia thailandensis MSMB43 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia thailandensis; 0.939137797 0.947317463 0.946297496 0.957529932 0.910313364 0.957204179 0.914681276 0.911781302 0.952877368 0.955307016 1.018048268 0.934458805 0.898281521 0.942521657 0.871084129 0.923563433 0.96065418 0.972483292 110285385 pcag Mesorhizobium sp. BNC1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 1.025917923 1.023311967 1.00361103 1.03737899 1.000703867 1.01414319 0.990981995 1.023250441 1.030533471 0.977092093 0.979583329 0.994839954 0.983012447 0.943873529 0.942647675 0.969821687 1.025866747 1.019940706 338169503 cmci Cupriavidus necator N-1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 1.237858825 1.265672607 1.203577982 1.364223551 1.232370146 1.233140689 1.22363286 1.19863939 1.221723547 1.250070966 1.214870612 1.231719119 1.205123918 1.164272741 1.1444349 1.211918378 1.205878941 1.215161967 580822 xylanase Bacillus pumilus Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 1.218849569 1.17885071 1.171190538 1.196694848 1.169273438 1.204449279 1.170804527 1.175592075 1.184857073 1.155842114 1.168828168 1.187418936 1.175983782 1.146552293 1.162419513 1.180529768 1.210791314 1.178621001 332553052 terc Desulfovibrio africanus str. Walvis Bay Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio africanus; 1.276349893 1.238036723 1.24639816 1.281936044 1.25207452 1.255791123 1.264929614 1.28137353 1.267173114 1.226703214 1.22635494 1.282645451 1.200356045 1.196867723 1.202891287 1.235405622 1.24298776 1.215098239 319638021 cysJ Neisseria mucosa C102 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria mucosa; 1.170579274 1.137092797 1.127676486 1.144681703 1.119861343 1.133438564 1.112155356 1.132519669 1.129646 1.118016313 1.119460265 1.10163372 1.080188498 1.083070752 1.0751634 1.067124885 1.14910697 1.142679955 193224935 soxY Cupriavidus taiwanensis Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus; 1.223763365 1.115996196 1.077250555 1.093426531 1.036870632 1.113747533 1.022351522 1.067267822 1.080961239 1.111231468 1.094374739 1.087645923 1.034692617 1.059088094 1.014838239 1.049711831 1.14024877 1.099434393 238919980 fthfs Edwardsiella ictaluri 93-146 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Edwardsiella;species:Edwardsiella ictaluri; 0.959376954 0.95126626 0.955623841 0.925860568 0.929757494 0.916338174 0.907431143 0.895566204 0.924911836 0.957927081 0.939570354 0.977714371 0.8833334 0.868487143 0.868136293 0.948756518 0.946641915 0.952142966 197782166 poba Streptomyces sviceus ATCC 29083 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 1.094676065 1.141291109 1.099060807 1.110122402 1.099526437 1.138576332 1.0721609 1.05841192 1.107024967 1.107809831 1.078738897 1.061355694 1.066364496 1.064900268 1.019028219 1.055519338 1.112692063 1.11628867 317506881 merb Segniliparus rugosus ATCC BAA-974 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Segniliparaceae;genus:Segniliparus;species:Segniliparus rugosus; 0.824820315 0.880096189 0.778980681 0.820013466 0.818695593 0.824569264 0.811826383 0.900042629 151588147 dehh109 Methylobacterium extorquens PA1 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium extorquens; 0.797545221 0.821336374 359838067 amyA Actinoplanes sp. SE50/110 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes; 0.829595869 0.822207867 0.800318388 0.821897601 145246056 phytase Aspergillus niger Phosphorus Phytic acid hydrolysis NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 0.878115611 0.868569219 0.830989464 0.869097425 0.824402864 0.823057586 0.847389156 0.81628639 0.855827913 0.885184436 108763074 chitinase Myxococcus xanthus DK 1622 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus xanthus; 1.305342623 1.281021323 1.284180341 1.276742369 1.270498297 1.300227353 1.259588397 1.287971477 1.274250311 1.290572131 1.266266874 1.269629094 1.2329204 1.236693207 1.246699388 1.250281185 1.286272408 1.302987679 297159976 acetylglucosaminidase Streptomyces bingchenggensis BCW-1 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces bingchenggensis; 1.135332571 1.09649387 1.140561522 1.109799665 1.102736634 1.128236824 1.144599718 1.077408075 1.098151656 1.021942148 1.006976442 1.052874632 1.042696101 1.030126927 0.987358358 1.038568641 1.122861127 1.123396607 334125649 urec Enterobacter hormaechei ATCC 49162 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter hormaechei; 0.859753079 0.890282409 0.914078478 0.908761363 0.850234703 0.842979167 0.824977879 0.854513966 0.824023342 0.844331152 0.824779092 0.848276052 0.833875903 0.827485511 0.844630943 0.821502521 0.85387731 0.867632669 357632620 acetylglucosaminidase Desulfovibrio sp. FW1012B Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 1.17682775 1.127061919 1.156940684 1.186441322 1.131135202 1.142383825 1.071214016 1.193080133 1.175866376 1.138120409 1.131087528 1.173252238 1.124633966 1.112838735 1.116623508 1.133930999 1.160321221 1.14142187 219850336 glucoamylase Chloroflexus aggregans DSM 9485 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aggregans; 0.89912251 0.850763211 0.880105143 0.889750884 0.863874599 0.818017384 0.850786762 0.843966612 0.882335785 0.953888695 0.872300628 0.821927773 0.821602865 0.839692823 0.866222295 0.848069608 33391367 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.843746992 0.915721695 0.884319866 0.866441649 0.871124321 0.914929229 0.887316889 0.865469492 0.871317991 0.87715965 0.899392713 0.868975256 0.84274958 0.856577026 0.867576307 0.886248513 0.890061106 0.873576853 237686555 sqr Teredinibacter turnerae T7901 Sulfur Sulfide Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;genus:Teredinibacter;species:Teredinibacter turnerae; 1.432876919 1.3079297 1.357951639 1.39443907 1.369174325 1.332318273 1.323655244 1.344603395 1.428467634 1.434243812 1.370556147 1.397843856 1.313736347 1.298348616 1.312351395 1.34223975 1.425178561 1.374142614 269979611 fthfs uncultured rumen bacterium Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria; 0.805873504 0.933866576 0.878649618 0.925594265 0.854969684 0.782525525 0.861350357 0.832609425 0.868362095 0.834807438 0.870937271 0.841205738 0.791829085 13488355 APS_AprB Mesorhizobium loti MAFF303099 Sulfur adenylylsulfate reductase NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 0.900215359 0.926656375 0.915953577 0.948194037 0.921059096 0.992347693 0.927158089 0.934892228 0.904288446 0.910198549 0.894918035 0.919796404 0.930345264 0.899738603 0.943099778 0.935292699 0.949869 0.883032026 55231681 norb Haloarcula marismortui ATCC 43049 Nitrogen Denitrification NA superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloarcula;species:Haloarcula marismortui; 0.849475534 0.872601672 0.867470258 0.877850561 0.861761918 0.880634193 0.85519054 0.840771518 0.904418278 0.881814982 0.889668414 0.851081358 0.804433106 0.858487513 0.810956223 0.817143258 0.859616535 0.863184173 415256 mauab Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus; 1.208508409 1.197223738 1.154560251 1.189957045 1.174626619 1.171985093 1.132302755 1.150840505 1.183880281 1.165677993 1.158993652 1.164039365 1.134316607 1.123596197 1.111490585 1.171435456 1.188948473 1.168611461 147850096 ppx Synechococcus sp. RCC307 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 0.864832688 0.875386448 0.826553038 0.893393947 0.853443138 0.897619955 0.884707723 0.869550601 0.847481588 0.845827086 0.847831294 0.878449062 0.815837015 0.784191602 0.824824537 0.847032078 0.871871971 262194994 mdlc Haliangium ochraceum DSM 14365 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Kofleriaceae;genus:Haliangium;species:Haliangium ochraceum; 0.909976647 0.862719925 0.937834223 0.916187015 0.85047897 0.893810624 0.891070755 0.854838336 0.788362512 0.842263725 0.82676973 0.845451753 0.910874141 75259586 phytase Mitsuokella multacida Phosphorus Phytic acid hydrolysis NA superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Mitsuokella; 0.990315068 0.916395144 0.901688081 0.958569703 0.892416299 0.901066017 0.898733819 0.902444103 0.970080715 0.914172369 0.888417465 0.901197211 0.880919375 0.848990793 0.879218751 0.832057592 0.987824646 0.920398571 51534775 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.816944775 0.922424892 0.856931375 0.886715891 0.878639859 0.916180479 0.802606281 0.820249742 0.853338917 0.877189452 0.871357572 0.865069405 0.810451948 0.8445859 0.914003736 0.903984458 421953170 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.936615094 0.817689189 0.803139005 0.831590812 0.824915292 0.786048112 0.844805746 0.819392535 0.792956506 0.915492322 0.837080492 0.823658198 356676328 FBP_aldolase SAR116 cluster alpha proteobacterium HIMB100 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 0.870460273 0.876494085 0.822667985 0.940340895 0.847964973 0.868882087 0.85652023 0.904443548 0.884783629 0.804378482 0.884990469 0.890163917 0.886209201 91688346 aln Burkholderia xenovorans LB400 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 0.981295526 0.907308287 0.919889871 0.983567905 0.943551238 0.935348106 0.891203858 0.947906546 0.942962781 0.908992311 0.898214201 0.9649846 0.928865585 0.92014656 0.889657125 0.925230985 0.936661741 0.923118812 383210696 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.133716359 1.072077229 1.095121922 1.103951878 1.035606416 1.08956905 1.066275361 1.058421702 1.118456659 1.11221591 1.102685657 1.077761874 1.085921349 1.121292793 1.0110819 1.039220333 1.097338627 1.089384076 378827403 tktA Sinorhizobium fredii HH103 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium fredii; 0.936044151 0.931170907 0.928954866 0.91615783 0.920805246 0.929946408 0.853126595 0.899298241 0.907631558 0.918691318 0.884761147 0.906225768 0.87783552 0.975558491 0.914709112 0.86777476 0.905273451 0.950167935 157285650 napa uncultured bacterium Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria; 0.853135538 0.899582698 0.814502868 0.942802596 0.886161712 0.81995639 0.879149071 0.84710215 0.858690654 0.893547377 0.834375423 0.907824348 0.835486804 0.842815891 0.825175189 0.887901101 0.912515692 0.904876041 37726808 dsrB uncultured prokaryote Sulfur sulfite reduction NA 0.874421515 0.78988615 0.807963537 0.870692705 0.83758681 0.821140496 0.822613975 0.825957979 0.863552661 0.854589683 0.878832242 167588345 chitinase Burkholderia ubonensis Bu Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ubonensis; 0.828511816 0.785191285 359148658 chitinase Streptomyces sp. S4 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 0.894678756 0.834746347 0.865668445 0.866297331 0.854000903 0.805799553 0.861783822 0.858616625 0.839013013 0.807050457 0.848056139 0.860805828 0.893732165 377574926 amyA Mobilicoccus pelagius NBRC 104925 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dermatophilaceae;genus:Mobilicoccus;species:Mobilicoccus pelagius; 1.079673433 1.090628325 1.03862018 1.101825666 1.055014842 1.086959207 1.013794986 1.062614552 1.058409753 1.066212103 1.05185603 1.048706818 1.047478037 1.039738707 1.019935918 1.040835976 1.073690567 1.071234707 212171574 alkb Corynebacterium variabile Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium; 1.044836031 1.053086424 1.002968776 1.072081545 1.041251356 1.04169111 1.027547632 0.993247671 1.054091208 0.985418037 0.99925666 1.008609648 0.96812839 0.962988698 0.945501508 0.949832506 1.046638035 1.06483246 359821962 cutinase Mycobacterium rhodesiae NBB3 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 0.975490291 0.972988322 0.981252592 0.997154972 1.004227541 1.002484809 0.965467667 0.970793259 0.988977113 0.942884309 0.93320287 0.956638799 0.974465468 0.938674843 0.971086086 0.981041222 1.042374629 0.966781079 171851201 ppx Corynebacterium urealyticum DSM 7109 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium urealyticum; 1.006994247 0.976638594 0.99969434 0.992822412 0.989514177 0.99254661 0.99979279 0.954129419 0.973723746 0.962954615 0.992039298 0.938201215 0.904859354 0.869056227 0.939156881 0.996079271 1.014195025 320102576 amyA Isosphaera pallida ATCC 43644 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Isosphaera;species:Isosphaera pallida; 0.888408813 0.88281843 0.879036169 0.865129857 0.938331254 0.860920315 0.915250134 0.865436525 0.819545507 0.843370648 0.865866749 0.846732915 0.835469901 0.810403439 0.854364046 0.868141692 302035694 frdA_rTCA Candidatus Nitrospira defluvii Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle superkingdom:Bacteria;phylum:Nitrospirae;class:Nitrospira;order:Nitrospirales;family:Nitrospiraceae;genus:Nitrospira; 0.861447198 0.908047605 0.890621343 0.890718658 0.829734392 0.850233628 0.846731707 0.871580228 0.884122922 0.896529855 0.870727064 0.89597205 0.796080107 0.845441213 0.834996696 0.822282233 0.881536863 0.929928515 157285606 napa uncultured bacterium Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria; 0.929899416 0.928185831 0.902768872 0.944256341 0.979084423 0.926620135 0.889010153 0.966095042 0.94659503 0.944987409 0.925843339 0.936975473 0.884583693 0.8477123 0.803940384 0.903755189 0.892141023 0.901347635 59892356 nifh uncultured forest soil bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.825810259 0.794146403 0.831681248 0.813058357 0.8182904 0.910098061 0.840542639 0.770369911 0.805598106 0.817636112 0.83045464 217329957 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.056367226 1.074440948 1.060033145 1.034862214 1.061765862 1.035014116 1.008968844 1.026305697 1.0385145 1.039189184 1.047263084 1.036003557 1.042794758 0.983858499 0.982432471 0.99952721 1.062113992 1.034982391 156744162 amyA Roseiflexus castenholzii DSM 13941 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus;species:Roseiflexus castenholzii; 1.215999973 1.16074304 1.153425829 1.223759027 1.132581768 1.160049183 1.150314199 1.186071843 1.181262277 1.177441429 1.144255875 1.196039876 1.130098826 1.1431888 1.121259761 1.160303733 1.212747782 1.170715946 220911259 amyA Arthrobacter chlorophenolicus A6 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 0.975630805 0.975260756 0.94106187 0.951385009 0.912710499 0.933357398 0.931934789 0.930948099 0.953838964 0.959496577 0.931081993 0.946771473 0.923177054 0.932508216 0.895548237 0.906289733 0.962694114 0.986527186 336428186 amyA Lachnospiraceae bacterium 3_1_57FAA_CT1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae; 1.016782447 1.028818849 1.082256758 1.034822997 1.006125113 1.002433975 0.972247979 1.061265563 1.01383235 1.018572661 1.023604957 1.015080671 1.011009208 0.999025195 0.979902437 0.988500313 1.00673766 0.990195793 117924502 nifh Magnetococcus sp. MC-1 Nitrogen Nitrogen fixation NA superkingdom:Bacteria;phylum:Proteobacteria;genus:Magnetococcus; 0.780117168 0.792533149 0.834302624 0.804835012 0.846147276 0.866953777 0.86799423 0.830821843 0.830484011 0.809504523 0.798966509 346991791 GAPDH_Calvin Ruegeria sp. TW15 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 0.946841246 0.881268879 0.817350489 0.888921787 0.87891006 0.858333474 0.920778545 0.888266784 0.900892325 0.923630148 0.896541445 0.889114477 0.853471023 0.864031153 0.822761534 0.847404286 0.852533985 0.868655803 358752022 RgaE Granulicella mallensis MP5ACTX8 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Granulicella;species:Granulicella mallensis; 1.002385013 0.96070155 1.019273642 1.027989116 0.952018969 0.984191679 0.975120912 1.001237219 0.988997134 0.994518784 0.963483551 0.995395897 0.932450887 0.946308677 0.921940585 0.919506547 1.004948382 1.003157319 312114865 FBP_aldolase Rhodomicrobium vannielii ATCC 17100 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Rhodomicrobium;species:Rhodomicrobium vannielii; 1.369105968 1.338903816 1.336060745 1.323630462 1.310543609 1.332346939 1.290697567 1.299152106 1.300146299 1.278089219 1.34583365 1.332648603 1.291660606 1.279095804 1.29166586 1.289692465 1.353840976 1.290874187 119391455 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.011372419 1.039384713 1.013181153 1.009721784 1.029287122 1.061862755 1.002089826 0.993824806 1.036962648 1.031865507 1.014668017 1.003363625 1.004134888 1.016442619 1.025567579 0.992722163 1.059288666 1.039569288 254443492 amyA Verrucomicrobiae bacterium DG1235 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales; 1.134886384 1.115050264 1.078046782 1.12017154 1.084202314 1.111757308 1.048376195 1.043148351 1.040093677 1.048327451 1.032727315 1.049974411 1.060143653 1.061121015 1.03429578 1.055012646 1.128925384 1.108089641 166408388 one_ring_23diox uncultured bacterium Organic Remediation Aromatics Other aromatics superkingdom:Bacteria; 1.25507795 1.218021409 1.212196703 1.226946916 1.203884967 1.239519153 1.200190858 1.212351452 1.208937931 1.203833481 1.205000576 1.20772994 1.202104413 1.184795038 1.19790753 1.189537474 1.238327605 1.195532003 344036343 amyA Streptomyces violaceusniger Tu 4113 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces violaceusniger; 1.314823837 1.298909145 1.245908618 1.25759714 1.241543952 1.247683063 1.216306624 1.257436992 1.253833981 1.213528769 1.243021179 1.250987133 1.229027908 1.185577488 1.211508011 1.227953353 1.273468416 1.218092811 381381974 acetylglucosaminidase Caldilinea aerophila DSM 14535 = NBRC 104270 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Chloroflexi;class:Caldilineae;order:Caldilineales;family:Caldilineaceae;genus:Caldilinea;species:Caldilinea aerophila; 0.986681434 1.067808328 0.945218296 1.003152778 0.976799004 1.050639834 0.959413935 0.961154069 0.97079315 1.091735765 0.914608052 0.96561629 0.95529821 1.036290328 0.934384868 0.973996435 1.047949514 1.0540423 333481981 narg Amycolicicoccus subflavus DQS3-9A1 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Amycolicicoccus;species:Amycolicicoccus subflavus; 0.806706043 0.798455019 0.81044604 0.793564097 321163417 acetylglucosaminidase Granulicella tundricola MP5ACTX9 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Granulicella;species:Granulicella tundricola; 1.272599603 1.228284753 1.244196039 1.248181587 1.195432186 1.258230416 1.195427115 1.222299113 1.229502866 1.218916259 1.199095717 1.221776706 1.207999368 1.197328657 1.179211108 1.219238691 1.256372627 1.229022882 260652335 endochitinase Streptomyces scabiei 87.22 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces scabiei; 1.00667443 0.93689445 0.953507458 0.965123703 0.924034824 0.940219276 0.915655914 0.962682798 0.951625546 0.940526083 0.941287163 0.953135234 0.943826441 0.938505783 0.917532557 0.938072033 0.951644755 0.952040308 84386987 alginase Vibrio splendidus 12B01 Carbon Cycling Carbon degradation Alginate superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio splendidus; 0.83303524 0.867339032 0.875327292 0.856781617 0.834550949 0.901640399 0.865251175 0.875511214 0.810678043 0.847228974 0.784029294 0.806191936 0.814644339 0.851781673 0.88023949 392381586 exaa(moxf) Azospirillum brasilense Sp245 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum brasilense; 1.089355042 1.067405727 1.003782951 1.058002677 1.006168314 1.072679872 1.033460793 1.042733178 1.062617696 1.021168137 1.023655256 1.041808169 0.996260037 1.02468485 1.018218597 1.051393419 1.077553413 1.038432533 159041427 dsra Caldivirga maquilingensis IC-167 Sulfur sulfite reduction NA superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Caldivirga;species:Caldivirga maquilingensis; 0.977136674 1.029176082 0.954997587 0.976846288 0.94102829 0.916902031 0.9229979 0.937108299 0.980484463 0.920254893 0.94754962 0.956654467 0.888063396 0.849534587 0.863763378 0.915943316 0.968605455 0.959535674 381361630 soxY Bradyrhizobium sp. S23321 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.869959906 0.825129821 0.876994349 0.83325294 0.838255043 0.87503658 0.825146676 0.876877943 0.789874068 0.854722972 0.899619678 359148130 amyA Streptomyces sp. S4 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 1.181973504 1.175260295 1.174920849 1.158853079 1.184468944 1.181179522 1.168663182 1.160875618 1.158083879 1.168650784 1.180653041 1.167555231 1.166044596 1.118346117 1.095026536 1.144927089 1.156050526 1.184302205 319413899 phenol_oxidase uncultured bacterium Carbon Cycling Carbon degradation Lignin superkingdom:Bacteria; 0.801651301 0.81381908 0.84494386 0.804477642 365337513 mdlc Bradyrhizobium sp. STM 3809 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 1.255773917 1.200968406 1.222003478 1.218161196 1.183613856 1.207170176 1.193993964 1.204824529 1.211578636 1.183586856 1.209181795 1.204004711 1.192093006 1.128591832 1.154639775 1.179200753 1.238622132 1.176817383 365335053 cellobiase Bradyrhizobium sp. STM 3809 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 1.227557835 1.185515322 1.20907353 1.192996031 1.194392589 1.233551165 1.210039577 1.224714913 1.19470092 1.196722475 1.190768351 1.200582519 1.166169651 1.145886368 1.145179696 1.1844747 1.224381214 1.206363833 32397025 nrfa Rhodopirellula baltica SH 1 Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Rhodopirellula;species:Rhodopirellula baltica; 0.845979826 0.925450334 0.876667506 0.898346992 0.878251847 0.894030067 0.810601056 0.86904352 0.855541773 0.827600801 0.842851155 0.833737618 0.864980599 0.927472447 0.926188218 357039145 dsrB Desulfotomaculum gibsoniae DSM 7213 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum gibsoniae; 0.942664064 0.93260597 0.925500652 0.975685089 0.934551571 0.950879499 0.920296286 0.951584235 0.957171723 0.911421794 0.881900091 0.94362106 0.877395279 0.896366173 0.827675782 0.879400775 0.980955009 0.929443919 374922789 arra uncultured bacterium Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 1.061397929 1.09993626 1.032830797 1.049692993 1.048766064 1.059436628 1.044336379 1.037189597 1.028652019 1.073685919 1.110034973 1.088635555 1.014224503 0.996074241 0.929706469 1.002773326 1.051466035 1.097802069 220717762 pcag Variovorax paradoxus S110 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 1.257654252 1.258828834 1.215917306 1.215832483 1.216019299 1.242504825 1.20484603 1.20959739 1.202372293 1.214780893 1.224288768 1.210825849 1.205224367 1.186837751 1.188160554 1.235875525 1.246182018 1.235566998 153005715 soxY Anaeromyxobacter sp. Fw109-5 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter; 1.003145835 1.042034775 1.047115015 0.992204688 0.973959941 1.037623021 0.970963502 0.99733475 1.029166108 0.988218029 0.971555667 1.001286249 1.073773043 0.993483675 0.982870974 1.00022638 1.021667408 0.997767287 291069809 amyA Citrobacter youngae ATCC 29220 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter youngae; 1.147225308 1.135003288 1.151276154 1.17187535 1.132196403 1.188493257 1.194986049 1.183082216 1.14784801 1.131344029 1.124202137 1.149291599 1.154303729 1.116562675 1.247925323 1.149892674 1.144916616 1.132217411 302413403 cellobiase Verticillium albo-atrum VaMs.102 Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticilium;species:Verticillium albo-atrum; 0.981913703 0.970938819 0.985639628 0.960871209 0.92438854 0.971843047 0.903131891 0.999413906 0.980506812 0.948147186 0.939456574 0.970108274 0.910677591 0.943131942 0.916201306 0.95554404 0.973851716 0.998916115 312170116 nbac Burkholderia rhizoxinica HKI 454 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia rhizoxinica; 0.871420602 0.820123446 0.828103544 0.867437102 0.860854929 0.797829524 0.849502146 0.8402957 0.83519674 0.863958576 0.865471296 219795536 pectinase (pectate_lyase) Bacillus licheniformis ATCC 14580 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus licheniformis; 0.928236491 0.947427142 0.931414936 0.944156299 0.959724849 0.928923645 0.912770074 0.948118479 0.908274287 0.919849553 0.917732827 0.914659816 0.888864612 0.869510052 0.875795793 0.808965014 0.93111096 0.949608811 121553331 urec Verminephrobacter eiseniae EF01-2 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 1.056333303 1.039232224 0.981645558 1.068415083 0.970538673 1.017723864 0.998743694 1.026730795 1.039691431 1.020344482 0.984927979 1.018150918 0.923398554 0.989458476 0.867962091 0.953795693 1.041901578 1.051303272 341615802 ppx Citromicrobium sp. JLT1363 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Citromicrobium; 1.138650205 1.132641147 1.111448556 1.123540392 1.119230448 1.136890305 1.110983084 1.100749755 1.112024148 1.11067816 1.089775823 1.121768636 1.096627659 1.051668902 1.072880956 1.08072606 1.130179171 1.118757807 87134243 one_ring_12diox Novosphingobium aromaticivorans DSM 12444 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium aromaticivorans; 1.208223085 1.213076593 1.19200769 1.194866469 1.174066677 1.211992453 1.178464657 1.194308518 1.189345376 1.199254196 1.175806554 1.213174558 1.139526303 1.149976843 1.148050243 1.151882507 1.204085554 1.210560804 371486302 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.377808369 1.396687547 1.373720536 1.3630708 1.339002292 1.339222198 1.328359852 1.358625524 1.350363595 1.339760804 1.385231945 1.352880463 1.330187795 1.271967582 1.288818201 1.291209662 1.351683603 1.32940838 197706742 exochitinase Streptomyces clavuligerus ATCC 27064 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces clavuligerus; 0.860971335 0.848811831 0.809239778 0.851477641 0.852189723 0.815962877 0.835084898 315249676 pme Prevotella buccae ATCC 33574 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella buccae; 0.83590457 0.803313085 0.834703991 0.815246524 0.830112949 0.843292317 0.859180704 0.840122752 0.885413385 0.879907499 0.848796747 0.846363203 0.815161946 0.846788866 349781046 FBPase Thioalkalivibrio thiocyanoxidans ARh 4 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio;species:Thioalkalivibrio thiocyanoxidans; 1.109848829 1.09182135 1.099113864 1.12585213 1.107574834 1.111433341 1.104585944 1.131415186 1.107384432 1.09465521 1.126824089 1.114967333 1.130182127 1.031615346 1.071392464 1.066924996 1.105386666 1.072033312 37222160 beta_agarase uncultured bacterium Carbon Cycling Carbon degradation Agar superkingdom:Bacteria; 0.924071755 0.905972056 0.91097353 0.977468732 0.845665511 0.897485028 0.924110753 0.931430311 0.947930885 0.911695051 0.933659654 0.922523987 0.871125259 0.914339238 0.851112988 0.865352636 0.951979957 0.88927061 297152451 tehb Streptomyces pristinaespiralis ATCC 25486 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces pristinaespiralis; 0.914314976 0.88093747 0.861218187 0.926337697 0.860662613 0.847714505 0.887792697 0.870215597 0.900001951 0.84564156 0.872808852 0.875413704 0.798324799 0.82709063 0.887149452 0.908819255 377559552 amyA Gordonia otitidis NBRC 100426 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia otitidis; 1.102428221 1.067049973 1.076403265 1.096346219 1.083207523 1.102206862 1.092150042 1.076776055 1.099639923 1.060873257 1.09311619 1.083106441 1.014659142 1.027681676 0.9977755 1.036269562 1.104564817 1.086292647 5881858 chnb Streptomyces coelicolor A3(2) Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 1.000791477 1.037114243 0.970422789 1.007389432 1.02382867 1.014958331 0.996171196 0.992858634 0.993805926 1.059440108 1.015332382 1.019338109 1.024994135 1.039556804 1.015730477 1.009409597 0.976836263 1.042625347 365898088 amyA Bradyrhizobium sp. STM 3843 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 1.074020411 1.037157065 1.017746292 1.057599046 1.004013791 1.05916082 0.961422332 1.026305052 1.048668671 1.022747746 1.004741417 1.030236108 0.98941768 1.027364542 1.049778813 1.056932722 1.11099037 1.065056018 329301478 amyA Streptomyces griseoaurantiacus M045 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseoaurantiacus; 1.055723338 1.044495696 1.037882942 1.046843031 1.072593264 1.042317409 1.069880186 1.047241061 1.043817955 1.05563726 1.061235762 1.059970729 1.005463901 0.991125668 0.931796754 0.999168089 1.005747933 1.017054194 41394664 cutinase Mycobacterium avium subsp. paratuberculosis K-10 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 0.877790312 0.955717063 0.851838757 0.936961882 0.87147865 0.901513016 0.841796662 0.849501294 0.868818891 0.888265682 0.853210317 0.854014597 0.874359724 0.895975098 0.875224143 0.930771336 0.937786096 343927017 terc Gordonia alkanivorans NBRC 16433 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia alkanivorans; 0.967183754 0.925404138 0.93455881 1.012455725 0.94162854 0.925153125 0.935879295 0.941815255 0.970273967 0.923209766 0.914711169 0.976458022 0.922796113 0.900936204 0.910983972 0.941115929 0.986933867 0.891233172 341935573 pectinase (pectate_lyase) Xanthomonas campestris pv. raphani 756C Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas campestris; 1.005671883 0.962271867 0.924428381 0.957851556 0.962907971 0.936019278 0.928212698 0.898432903 0.960254779 0.917760305 0.957026574 0.939779285 0.920884979 0.898064973 0.869256606 0.927600042 0.969323485 0.961179078 171996199 tktA Burkholderia ambifaria MC40-6 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ambifaria; 1.192067421 1.171643175 1.152785652 1.156330155 1.089426123 1.161772547 1.09815637 1.116875088 1.14925432 1.144522125 1.101977432 1.131700892 1.075066613 1.128806583 1.075034602 1.118981087 1.175932149 1.179477715 307132786 mannanase Dickeya dadantii 3937 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya dadantii; 0.977689174 0.92683472 0.886953289 0.948634899 0.939499006 0.950475376 0.906975193 0.893010768 0.912755686 0.921709228 0.949713565 0.903768382 0.892345929 0.91561173 0.937723998 0.93814029 0.97927923 0.936160797 323455968 actin_Stramenopiles Aureococcus anophagefferens Other Phylogenetic NA superkingdom:Eukaryota;class:Pelagophyceae;genus:Aureococcus; 0.975764922 0.999386973 0.829196827 0.915158255 0.948736214 0.933371877 0.833084986 0.878593459 0.899673135 0.916491942 0.816400663 0.963897865 0.884878554 0.865518517 0.848028021 0.907483781 0.976431716 0.99652922 358382720 ara Trichoderma virens Gv29-8 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Hypocreaceae;genus:Trichoderma;species:Trichoderma virens; 1.075669026 1.063201815 1.073223126 1.057431176 1.086747477 1.097425682 1.091774806 1.0902234 1.074364949 1.142270208 1.082608513 1.106729952 1.071348656 1.048122563 1.007662787 1.077327774 1.058625171 1.092401313 359833933 chitinase Actinoplanes sp. SE50/110 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes; 0.891353561 0.933924867 0.855803979 0.892439119 0.887969384 0.86911751 0.86628943 0.842201855 0.871822912 0.924376105 0.887436936 0.860630616 0.841215781 0.838438972 0.840424953 0.909733565 0.940544613 214031971 ppx Ruegeria sp. R11 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 1.192489247 1.162324138 1.168831149 1.208849267 1.162917187 1.145579042 1.178239566 1.208940707 1.191577121 1.154576597 1.159335252 1.180983749 1.134802062 1.076501383 1.148924077 1.11079814 1.190063792 1.121837337 283817794 amyA Spirosoma linguale DSM 74 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Spirosoma;species:Spirosoma linguale; 1.002783061 0.949649357 0.969120152 0.961830293 0.987071466 0.954525858 0.979878895 0.971644608 0.972991671 0.987306398 1.004578493 0.993284012 0.940372017 0.955925947 0.956101337 0.916155675 0.992239113 1.000819851 349785611 mannanase Thermobacillus composti KWC4 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Thermobacillus;species:Thermobacillus composti; 0.965320511 0.928626971 0.903161196 0.930031323 0.937146525 0.901657657 0.941867779 0.939828317 0.948768301 0.896020404 0.894050547 0.941132051 0.886406914 0.853082528 0.855164715 0.867101288 0.917297814 0.899668876 206685037 soxY Rhodobacterales bacterium Y4I Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 1.112117238 1.068575457 1.046403524 1.099712249 1.044201789 1.06804932 1.063036294 1.114936508 1.093036728 1.054277326 1.065681578 1.070333056 1.028440042 1.015423296 0.982379582 1.058062012 1.097832384 1.078950248 389694474 urec Microvirga sp. WSM3557 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Microvirga; 0.972574323 0.949422887 0.956609275 0.972991502 0.955146082 0.996821973 0.969640823 0.934189666 0.968070194 0.992050264 0.952696274 0.929396676 0.928220434 0.943435622 0.90520324 0.913661342 0.974785887 0.960764538 260576741 pgk Rhodobacter sp. SW2 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter; 1.079003408 1.069146692 1.051017325 1.051094675 1.038259283 1.077291381 1.021155055 1.018478752 1.041778227 1.032056034 1.042651572 1.048368528 1.038878132 1.018893231 1.016125699 1.048102513 1.079105094 1.022429258 77458551 bend Pseudomonas fluorescens Pf0-1 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 1.288367232 1.270608581 1.280506478 1.3435146 1.28450704 1.258749063 1.266343715 1.32377119 1.284320438 1.229708915 1.263857072 1.315792792 1.238475881 1.223755151 1.268107821 1.25610891 1.259918605 1.231252802 126347329 urec Streptomyces ambofaciens ATCC 23877 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces ambofaciens; 0.91478236 0.905935571 0.935622033 0.892837454 0.916607596 0.913007365 0.896537372 0.903128584 0.898038383 0.936898243 0.89090288 0.929883427 0.844317995 0.884392734 0.878604692 0.866238011 0.955029336 0.992822391 227069631 nira uncultured archaeon Nitrogen Assimilatory N reduction NA superkingdom:Archaea; 0.849088823 0.808461104 1.081590798 0.811303178 0.834687862 0.808870837 113525909 mdlc Ralstonia eutropha H16 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 1.041982524 1.131719929 1.041814512 1.103915269 1.012911591 1.056828274 1.053982424 1.047717913 1.047426972 1.025070472 1.096991986 1.0595627 0.988234746 0.982812253 0.91351179 1.002252706 1.039999382 1.034232682 353221780 poba Saccharomonospora paurometabolica YIM 90007 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora paurometabolica; 1.046421292 1.021784833 1.025729509 1.02237906 1.020960724 1.047438425 1.009598323 0.975752812 1.013269082 1.001107961 0.933698761 0.982562224 0.939238666 0.956870833 0.946232712 0.936767601 1.038989726 1.042175784 222085487 ppx Agrobacterium radiobacter K84 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 0.801533419 0.832120339 0.806544578 0.808017924 26278876 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.104639103 1.09427201 1.150475887 1.148708228 1.093364961 1.127069334 1.149887093 1.109085389 1.110127477 1.135026175 1.129680457 1.164551421 1.069365791 1.070327011 1.059547798 1.078619106 1.094764343 1.057784047 398959333 nagg Pseudomonas sp. GM33 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.872792777 0.817282359 0.836860035 0.868417376 0.817026055 0.814329224 0.802159745 0.801148426 0.869586095 0.835047617 0.818191124 0.811053575 0.854927568 108770466 amyA Mycobacterium sp. MCS Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 1.258590631 1.241946583 1.218543669 1.19365202 1.18747746 1.246777388 1.190368134 1.216212608 1.251121126 1.207618848 1.176996226 1.196236704 1.168620644 1.177789654 1.104471227 1.195682261 1.213182749 1.210013134 323366282 nifh uncultured microorganism Nitrogen Nitrogen fixation NA 1.148750421 1.165755631 1.129598189 1.166344408 1.159254125 1.160151775 1.155678172 1.169236579 1.111028701 1.134344081 1.151480568 1.154711828 1.140624892 1.127615711 1.078456438 1.136949014 1.128399452 1.140828111 159044908 urec Dinoroseobacter shibae DFL 12 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 0.885885477 0.975592108 0.922648553 0.957909236 0.898717975 0.934591657 0.907840221 0.898794928 0.851937308 0.915594866 0.947401729 0.899623056 0.91085462 0.876379277 0.937584584 0.91591249 0.925451206 0.930552854 212544942 RgaE Penicillium marneffei ATCC 18224 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 0.94714746 0.845740257 0.916463122 0.827254593 0.953052193 0.976244134 0.95554084 0.849917413 0.898025612 0.981517773 0.954929022 0.927472786 0.906881975 0.909342576 0.899629781 0.963327749 0.938361608 0.956656746 311070933 amyA Bacillus atrophaeus 1942 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus atrophaeus; 1.091138812 1.057591418 1.066905008 1.073937953 1.023172271 1.121568309 1.049063917 1.077113818 1.088326072 1.047372489 1.058036652 1.084631024 1.004626766 1.082103871 0.976703763 1.075347173 1.09181964 1.055867763 116622106 xylanase Candidatus Solibacter usitatus Ellin6076 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 0.85186483 0.854816419 0.84213424 0.866383703 0.867558182 0.841232632 0.884026657 0.882700123 0.845597828 0.827902745 0.837346901 0.864310171 0.825159418 0.812222695 0.845784035 0.851144722 0.83677786 0.837808883 53758066 arsc Methylococcus capsulatus str. Bath Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylococcus;species:Methylococcus capsulatus; 1.02032965 1.025553967 1.01503033 1.033999823 1.008685409 1.028527522 0.989931204 1.013108706 0.992353533 0.997375447 0.995234732 1.011341564 1.032573149 0.981301165 1.004324232 1.014117391 1.022013587 0.975579113 188029873 cysJ Erwinia tasmaniensis Et1/99 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia tasmaniensis; 1.236821843 1.167183785 1.200012852 1.204487596 1.154139745 1.220025944 1.159993272 1.178424798 1.206894798 1.178473011 1.169917589 1.203936299 1.15276264 1.16164528 1.155706159 1.16525169 1.21571491 1.169310469 159181496 ppx alpha proteobacterium BAL199 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 0.863948627 0.855489323 0.814870914 0.926399265 0.812154526 0.885754325 0.894556421 0.860135996 0.80860768 0.813928097 0.842406149 0.851560513 0.844878651 0.863091796 159045225 GAPDH_Calvin Dinoroseobacter shibae DFL 12 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 1.214486744 1.203773372 1.18128211 1.180083679 1.170492604 1.198733272 1.155935601 1.16615446 1.194334917 1.192376376 1.163983844 1.174923973 1.148775361 1.213585938 1.125139816 1.174895021 1.207136762 1.204571471 167563426 alkb Burkholderia oklahomensis EO147 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia oklahomensis; 0.770042967 0.806643323 407899191 mdlc Acidovorax sp. KKS102 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 1.028891513 0.998967737 1.036857812 1.080954156 1.020531358 1.053417137 1.054585987 1.069160421 1.054261925 1.020058065 1.006082013 1.032430433 0.998240666 0.999767763 1.014215954 0.987494101 1.049604204 1.00887459 121716444 bph Aspergillus clavatus NRRL 1 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 0.935985398 0.862797681 0.939199318 0.982684149 0.872800949 0.913077375 0.917896642 0.912544586 0.944096764 0.868924683 0.85989767 0.923561434 0.867627107 0.863542817 0.857335162 0.856644417 0.921398092 0.870527629 116669298 amyA Arthrobacter sp. FB24 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 0.963489327 0.97328951 0.941793684 1.024216264 0.986651097 1.076443885 0.9329163 0.953252037 0.93368987 0.946626261 0.973581776 0.984890027 0.871098002 0.964743197 0.906435244 0.924186653 0.982102058 0.98546333 153838536 chitinase Vibrio parahaemolyticus AQ3810 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 0.809762767 0.806055033 0.825664874 0.912358089 0.85086401 0.799702327 0.838349829 255103651 rd Thalassiobium sp. R2A62 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Thalassobium; 1.177772776 1.180542102 1.156823699 1.221270448 1.198154114 1.180995803 1.202443994 1.20597519 1.185959586 1.179615807 1.160983794 1.193231191 1.180604217 1.16881036 1.187599709 1.184098333 1.180181655 1.171952525 307596044 por_DiC4HB Vulcanisaeta distributa DSM 14429 Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Vulcanisaeta;species:Vulcanisaeta distributa; 0.934751567 0.937650062 0.938227264 1.111255344 0.936421284 0.964906998 0.92484084 0.866284998 0.966583205 0.9571099 0.927631053 0.928212543 0.926595298 0.905546369 0.903171045 0.856437183 0.953896265 0.932389393 158523504 dsra uncultured bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.897177988 0.881288135 0.930284671 0.979166284 0.830853478 0.859867942 0.937105085 0.886726258 0.944925831 0.915514353 0.919092827 0.919325959 0.885077169 0.819997414 0.827907049 0.908195584 0.90927728 0.91447592 315418412 pme Asticcacaulis excentricus CB 48 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis excentricus; 1.122837379 1.150907871 1.101388784 1.134582422 1.087225372 1.148399824 1.084604138 1.032961303 1.081084272 1.143085588 1.120706246 1.142971533 1.103075834 1.106610455 0.957247525 1.10946576 1.098005414 1.160227291 164456112 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 1.363355515 1.333080657 1.308641886 1.291460979 1.296733894 1.331114962 1.285969317 1.27320475 1.299457868 1.341319192 1.311497108 1.306810851 1.25899462 1.262981621 1.242535308 1.278536069 1.320335975 1.342705271 219739410 FBPase Bradyrhizobium japonicum USDA 110 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium diazoefficiens; 1.103442982 1.118993024 1.063984672 1.05705264 0.993095694 1.099907943 1.039281221 1.055360441 1.044988561 1.096131681 1.039705624 1.046759749 0.963694364 1.041771801 0.951050207 1.023373427 1.048162878 1.067514969 346421702 cdo Pseudomonas sp. 19-rlim Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 1.033688902 0.978829424 0.939231644 0.979550897 0.981348598 1.022016494 0.94393494 0.949418243 0.977717878 0.996116422 0.984559665 0.969480385 0.908598821 0.943578497 0.852852925 0.951912082 0.973644012 0.976669555 330993701 vana Gluconacetobacter sp. SXCC-1 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter; 0.877171006 0.856961754 0.866478958 0.93451228 0.872385489 0.890541347 0.88522075 0.881463045 0.923403878 0.922231403 0.838428053 0.894301165 0.867413034 0.877040892 0.862181704 0.870746551 0.902095322 0.887087941 333117036 TIM Pseudomonas fulva 12-X Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fulva; 1.271936318 1.251943396 1.239746643 1.250434569 1.256683689 1.255864643 1.2470419 1.275580115 1.259743672 1.244397526 1.228618452 1.273309358 1.226932949 1.201805013 1.21537976 1.233469836 1.257362178 1.232753368 219858633 mannanase Arthrobacter chlorophenolicus A6 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 1.071186173 1.044207537 1.035203386 1.061513654 1.063804367 1.052382523 1.063354698 1.06245988 1.046963303 1.028856408 1.031880898 1.048982804 1.028024839 0.996392522 1.028248383 0.985938825 1.057905944 0.989577234 158251620 aps_apra uncultured gamma proteobacterium Sulfur adenylylsulfate reductase NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 1.085246556 1.092455206 1.038434709 1.098703807 1.096784294 1.048691932 1.074687575 1.073795172 1.067702027 1.041799995 1.062708025 1.073605929 1.042605125 1.045418151 1.064820711 1.064329044 1.088520984 1.056786681 254386270 endochitinase Streptomyces sp. Mg1 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 0.903309322 0.956556614 0.931005881 0.893071557 0.92613069 0.92373808 0.862855107 0.889103071 0.912937617 0.887245609 0.91833439 0.910464923 0.942564241 0.912908686 0.933259238 0.886568334 0.898831398 0.948955618 270342688 terc Dickeya dadantii Ech586 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya dadantii; 1.100589855 1.126088404 1.078354309 1.070640408 1.095305614 1.116860411 1.082197742 1.063524196 1.053276182 1.096831232 1.08406494 1.071588775 1.057113697 1.073327343 1.03726353 1.053045557 1.07321579 1.10323711 119637657 cysI Pseudomonas mosselii Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.917319514 0.980226245 0.911581398 0.929068515 0.887347971 0.921721351 0.88481299 0.919222499 0.913967841 0.87715374 0.942446934 0.916602362 0.914036358 0.889669782 0.899221275 0.947253372 0.9676508 188027734 pectinase (pectate_lyase) Erwinia tasmaniensis Et1/99 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia tasmaniensis; 1.036053588 1.040272672 0.948981334 1.059498846 1.024618906 1.006141524 1.00698183 1.037745293 1.045989957 1.024404344 1.008784839 1.039241449 1.00203865 0.986129138 0.965060506 1.000819749 1.027374484 1.053943522 257460805 fthfs Campylobacter gracilis RM3268 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter gracilis; 0.852102708 0.855685999 0.844344663 0.836897731 0.832640608 0.852704346 0.87031322 0.817653442 0.832742917 0.843800072 0.847928047 0.832393182 0.827645126 0.849389954 0.844269535 0.840319791 0.822764488 0.836009215 77546458 terc Pelobacter carbinolicus DSM 2380 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Pelobacteraceae;genus:Pelobacter;species:Pelobacter carbinolicus; 0.824807 0.872237642 0.818377179 0.822605107 0.852090621 0.813228795 0.802717939 0.834512714 0.83085242 106889690 ara Roseiflexus sp. RS-1 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus; 1.19427525 1.205055278 1.170129931 1.187678277 1.185913323 1.191947268 1.172950379 1.164110479 1.190708862 1.174114529 1.198403616 1.201141086 1.172242848 1.151787165 1.119627825 1.157085064 1.194313312 1.202044544 343426697 ara Sporisorium reilianum SRZ2 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Ustilaginomycetes;order:Ustilaginales;family:Ustilaginaceae;genus:Sporisorium;species:Sporisorium reilianum; 0.999567486 1.054945953 0.893727207 0.989999559 0.964713673 0.935427872 0.985675261 0.981157845 1.012208337 0.991536225 0.893847309 0.969820175 0.970167767 0.921481938 0.893845033 0.908302521 0.967716007 1.037236437 33243363 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.896481348 0.9259142 0.827590325 0.896525596 0.873576377 0.898609672 0.828956733 0.8291327 0.833085404 0.891613046 0.847875611 0.871770548 0.87781473 0.923976933 51244956 APS_AprB Desulfotalea psychrophila LSv54 Sulfur adenylylsulfate reductase NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobulbaceae;genus:Desulfotalea;species:Desulfotalea psychrophila; 0.922667183 0.905359516 0.956708734 0.941019139 0.970598513 1.085540923 0.935341411 1.031939322 0.895566401 0.949612033 0.974246514 0.941392464 0.943240389 0.995086334 0.949193428 0.886316683 0.895455534 0.949889624 302547584 one_ring_23diox Streptomyces hygroscopicus ATCC 53653 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces himastatinicus; 0.899937741 0.897097327 0.811868182 0.921011438 0.832949702 0.837124647 0.911526771 0.877217799 0.833845895 0.866168483 0.879048522 0.866446409 0.905744904 192764346 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.909685675 0.944615965 0.943995061 0.930984716 0.970947518 0.935304162 0.913528527 0.940170596 0.942158659 0.893643359 0.902760704 0.932752204 0.875368993 0.867552695 0.872622163 0.857061106 0.917329684 0.92329049 383777039 amyA Actinoplanes missouriensis 431 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes;species:Actinoplanes missouriensis; 0.971733678 0.951623736 0.985755452 0.993804671 0.99380286 0.931189617 0.987304494 1.024733457 0.976399213 0.920341531 0.965785595 0.941875694 0.877164708 0.884566222 0.889520473 0.841612329 0.941309762 0.977836908 53850117 SoxB Pseudaminobacter salicylatoxidans KCT001 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Pseudaminobacter;species:Pseudaminobacter salicylatoxidans; 1.050896673 1.059245119 0.959117143 1.030426348 0.927891483 1.02144123 0.941733753 1.014362797 1.0421004 1.031066467 0.99251537 1.006055575 0.938828754 0.995119691 0.911259564 0.971348205 1.053885859 1.054160368 126739238 atzb Roseobacter sp. SK209-2-6 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 0.976635308 1.008077983 0.888747878 1.028170401 1.02921432 1.010031625 1.006737038 0.988493896 0.993522944 0.987882493 1.009838936 1.010895755 1.054744398 0.98365805 0.974587366 0.996748988 0.975320823 0.981154187 302406080 cellobiase Verticillium albo-atrum VaMs.102 Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticilium;species:Verticillium albo-atrum; 0.832187606 0.792074498 0.844585409 0.806367111 229473039 dsra uncultured bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.050156553 1.127242885 1.049591306 1.097891305 1.067352297 1.037997774 1.063773373 1.051794914 1.006467014 1.043455541 1.031068312 1.052500558 0.972822746 0.99580212 0.937967011 0.965292527 1.047015666 1.083242578 346644317 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.17961401 1.177702048 1.114562247 1.165366544 1.111307913 1.174947814 1.134659834 1.144563209 1.150044094 1.150859054 1.108148886 1.140729091 1.115627742 1.110268248 1.104353074 1.13335917 1.186827463 1.174917439 353218227 ppx Saccharomonospora paurometabolica YIM 90007 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora paurometabolica; 1.133234913 1.139193989 1.105674483 1.106080649 1.128170372 1.133877822 1.06364827 1.086601343 1.087916956 1.076845613 1.05578159 1.105205785 1.084808258 1.088356602 1.049561987 1.05595551 1.120427889 1.133400884 254266623 soxY Methylobacterium extorquens DM4 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium extorquens; 0.942781957 0.979411575 0.938032776 0.936586716 0.869014515 0.928858263 0.898709999 0.938521212 0.930652059 0.950207761 0.892606984 0.986170737 0.876345819 0.876810943 0.861762492 0.870680041 0.942996535 0.996344663 239826723 alkk Geobacillus sp. WCH70 Organic Remediation Others NA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 0.805254206 0.890319862 87281334 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.053032892 1.060217933 1.056710748 1.050115644 1.060769315 1.036755676 1.054114564 1.0640908 1.046567774 1.061067874 1.078205459 1.045201248 1.044339014 0.990270405 0.969844488 0.993823597 1.062678708 1.023358494 323531915 arsm Desulfotomaculum nigrificans DSM 574 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum nigrificans; 1.110608546 1.082981964 1.07266731 1.145876229 1.081455548 1.113418373 1.08322726 1.111091757 1.10706154 1.055778298 1.072138723 1.080387355 1.066406159 1.034984575 1.069723524 1.065771068 1.126894482 1.078374152 337750423 RgaE Paenibacillus mucilaginosus KNP414 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 0.772314318 0.816344591 0.831642824 0.903851758 0.867876781 0.918078957 0.814632514 0.821865339 0.854135984 0.876867316 0.819233932 0.817668521 0.813326993 0.802877113 0.799057933 0.843547315 0.866328863 269828429 acetylglucosaminidase Vibrio alginolyticus 40B Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio alginolyticus; 0.857630854 0.866797477 0.841707734 0.87398718 0.831332487 0.847061771 0.854223431 0.876083881 0.838684062 0.836889024 0.887677474 0.806920653 0.806728188 0.867090119 0.831997574 0.885180166 0.83744125 343501497 amyA Vibrio tubiashii ATCC 19109 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio tubiashii; 0.813050228 0.811112774 0.809342175 0.811235165 0.829961326 0.843267229 227205704 chnb Rhodococcus sp. HI-31 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 0.856724776 0.836350062 0.851375948 0.847666631 0.869002603 0.83884188 0.828093768 0.858864849 0.848875219 0.835894135 0.84200159 0.868329884 0.860563923 0.860482093 0.846909295 0.849485906 126249721 PEPC Pyrobaculum calidifontis JCM 11548 Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum calidifontis; 0.936426347 0.902031107 0.811165524 0.890837813 0.841650398 0.902422877 0.874583549 0.908122408 0.835773366 0.870833191 0.827862969 0.906141238 0.862927572 83632046 chitinase Hahella chejuensis KCTC 2396 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Hahellaceae;genus:Hahella;species:Hahella chejuensis; 1.168194627 1.130207349 1.143517451 1.166927148 1.114466677 1.110059156 1.093680691 1.152881301 1.181530457 1.15261376 1.126516647 1.167004267 1.115120284 1.113160145 1.135475828 1.116095076 1.144594564 1.142740916 403205263 xylg Gordonia rhizosphera NBRC 16068 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia rhizosphera; 0.955656353 0.813797595 373463199 ara Lactobacillus kisonensis F0435 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus kisonensis; 0.914146097 0.861522175 0.863306155 0.884161816 0.847151583 0.798148215 0.879401422 0.852418136 0.883531804 0.85272522 0.848012573 0.880872691 0.90238527 0.907508141 0.869464166 85108032 exoglucanase Neurospora crassa OR74A Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Neurospora;species:Neurospora crassa; 0.971742628 0.967146049 0.960498918 1.01041163 0.992580806 0.993822268 1.042122725 0.986275132 0.972919063 1.013216549 1.013881159 1.013823338 0.979683755 1.003447276 0.926516386 0.958465075 0.950770173 0.972499481 119371712 narg Propionibacterium acidipropionici Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium; 0.98301375 0.975049323 0.94977294 0.990797656 0.973689003 0.985071849 0.97115536 0.960923097 0.9290445 0.990553856 0.960270342 0.98055992 0.955649079 0.938218044 0.943807494 0.960367753 0.969946102 0.969391699 9858069 pmoa uncultured proteobacterium pmoA-MO2 Carbon Cycling Methane Methane oxidation superkingdom:Bacteria;phylum:Proteobacteria; 1.450943808 1.296102588 1.268184226 0.968797592 0.893413272 0.942483738 0.956526629 0.91258502 0.99502883 0.9206553 1.234650398 0.930855201 0.86116367 0.937532102 0.820519334 0.851852953 0.919096855 0.951075942 177840849 ara Opitutus terrae PB90-1 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 1.089106988 1.05546606 1.090613545 1.122091102 1.042802807 1.121095659 1.066664602 1.105122531 1.102450837 1.097568187 1.068853571 1.084494363 1.054195593 1.100270552 1.067498347 1.094627326 1.122934192 1.145726704 315645899 xylanase Paenibacillus vortex V453 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus vortex; 1.12802699 1.177173731 1.104943638 1.119985159 1.107317162 1.164857866 1.132150339 1.118381212 1.12010284 1.122553549 1.091842752 1.143288735 1.083164798 1.105837567 1.111815114 1.098129505 1.126889232 1.113054675 56677636 soxY Silicibacter pomeroyi DSS-3 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 1.551905568 1.502405791 1.517825605 1.531237927 1.511634283 1.572183893 1.532441954 1.548659183 1.519905025 1.502143216 1.515290243 1.530316221 1.487874043 1.47365731 1.488984697 1.519086802 1.553435441 1.504305635 350549381 Sir Thermobacillus composti KWC4 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Thermobacillus;species:Thermobacillus composti; 0.898642457 0.905078314 0.866001576 0.886900547 0.828019405 0.869865767 0.820036617 0.874699393 0.888729489 0.855718956 0.859057313 0.842751529 0.840886644 0.882612525 0.897835285 0.852622213 302885760 exopolygalacturonase_fungi Nectria haematococca mpVI 77-13-4 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Nectria;species:Nectria haematococca; 0.821552012 0.778360728 325282684 amyA Deinococcus proteolyticus MRP Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus proteolyticus; 0.785427866 0.841171022 158314787 tfda Frankia sp. EAN1pec Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 0.9587516 0.934954412 0.851103644 0.948303512 0.946895473 0.936042653 0.945426778 1.013336352 0.948928962 0.889234787 0.96102121 0.938494383 0.853154169 0.79788152 0.797246755 0.924621319 0.884087186 78093544 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.82252231 0.836702476 0.829849243 0.863718785 0.795506542 0.892596721 0.86123414 0.821838637 0.842715075 0.826785251 0.816363547 0.875886546 383781312 amyA Actinoplanes missouriensis 431 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes;species:Actinoplanes missouriensis; 1.356379634 1.326751348 1.322825924 1.3178433 1.301523669 1.354726087 1.302565335 1.297656639 1.321210882 1.306470317 1.30803087 1.307724889 1.294970757 1.296018499 1.290715145 1.291244204 1.338666678 1.323515823 148499137 limeh Sphingomonas wittichii RW1 Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 0.939008618 0.887027576 0.934862314 0.943294736 0.85930027 0.975663078 0.877804027 0.879998179 0.910885088 1.055524868 0.903980096 0.90049569 0.884957563 0.932198799 0.858711479 0.91010756 0.936381037 0.944803041 151302126 aps_apra Thermodesulfatator indicus Sulfur adenylylsulfate reductase NA superkingdom:Bacteria;phylum:Thermodesulfobacteria;class:Thermodesulfobacteria;order:Thermodesulfobacteriales;family:Thermodesulfobacteriaceae;genus:Thermodesulfatator; 1.03261778 1.082554043 1.066279146 1.155862293 1.081690511 1.031888938 1.178324027 1.104746293 1.094045842 1.066889656 1.074864547 1.114490509 1.047803307 0.99974831 1.056784155 1.042830144 1.018417086 0.98670009 359836309 mannanase Actinoplanes sp. SE50/110 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes; 1.005583905 0.981738574 0.996840323 0.972254109 0.933342273 0.975371978 0.931763072 0.978634699 0.999403759 0.974012414 0.987046593 0.948116883 0.967492123 0.955429648 0.900116076 0.956990413 0.980766228 0.965805757 74057795 aps_apra Thiobacillus denitrificans ATCC 25259 Sulfur adenylylsulfate reductase NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus;species:Thiobacillus denitrificans; 1.246634473 1.246480384 1.239265271 1.230822398 1.24045681 1.272969353 1.22893574 1.213058013 1.223953943 1.23773399 1.219932694 1.21744598 1.212414112 1.207830233 1.221599545 1.201067784 1.247483159 1.23308578 311221468 FBPase Rhodomicrobium vannielii ATCC 17100 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Rhodomicrobium;species:Rhodomicrobium vannielii; 1.052707657 0.995834431 0.998950349 1.051366335 0.9892328 1.046066787 0.953429569 0.987100637 1.008416295 1.014899654 0.951803289 0.994675291 0.9654021 0.961959784 0.938974205 0.977307163 1.040333549 1.027590405 283808543 chitinase Kribbella flavida DSM 17836 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Kribbella;species:Kribbella flavida; 0.922705702 0.846820789 0.838497729 0.825681135 0.843263936 0.932144862 0.92697923 0.899925241 0.806898655 0.924170008 0.812106252 0.893828909 0.888060041 291301403 arsc Stackebrandtia nassauensis DSM 44728 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Glycomycetaceae;genus:Stackebrandtia;species:Stackebrandtia nassauensis; 1.093524632 1.123992116 1.12342066 1.16718846 1.118044745 1.141676293 1.104226692 1.127177304 1.074401431 1.0927814 1.091160434 1.10176122 1.083545995 1.080999015 1.044951772 1.094564104 1.150134096 1.125491405 118703443 oxdb Sphingomonas wittichii RW1 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 0.902377127 0.852222572 0.887179748 0.90270096 0.894314991 0.937477761 0.908219303 0.894986577 0.863395865 0.868875585 0.839884052 0.888939254 0.814906591 0.833847382 0.797433495 0.850150855 0.904979012 0.858169674 320006976 xylanase Streptomyces flavogriseus ATCC 33331 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces flavogriseus; 1.176507382 1.201100724 1.136421033 1.174380156 1.151512666 1.19267558 1.134903132 1.14900467 1.17111624 1.118291809 1.147235115 1.156261238 1.117744411 1.130080953 1.121203484 1.123415009 1.185062445 1.172680463 357079881 xylj Frankia sp. CN3 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 1.452967543 1.447164433 1.412238335 1.394015004 1.396537912 1.46185975 1.387384451 1.386017659 1.390503329 1.385006524 1.384616752 1.384003651 1.37893507 1.362892233 1.374921584 1.380082069 1.434248316 1.404310673 365855193 mer Acetobacteraceae bacterium AT-5844 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae; 0.894655525 0.889461683 0.839033837 0.935149011 0.915678757 0.817460015 0.865473636 0.816138538 0.896810918 0.840844858 0.84194797 0.910518285 0.889070789 0.846799428 0.894532679 0.875309952 0.879972881 373555276 bphd Mycobacterium tusciae JS617 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tusciae; 0.910178764 0.786992866 0.860027532 0.834633626 0.844719141 0.852710999 0.932632178 0.826635522 0.897406961 0.857680038 0.802924123 0.871107637 0.916016183 0.83070337 0.909857843 0.856059562 312221667 axe Leptosphaeria maculans JN3 Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Leptosphaeriaceae;genus:Leptosphaeria;species:Leptosphaeria maculans; 0.930666131 0.871375413 0.932005366 0.991698039 0.906853981 0.891224823 0.888551742 0.943519616 0.945836001 0.905937111 0.94257599 0.980723798 0.903247179 0.887657593 0.871437348 0.914952269 0.936216169 0.874303744 367474619 catechol Bradyrhizobium sp. ORS 285 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.847279322 0.855253862 0.839605047 0.839678548 0.824111862 0.853156389 0.80389177 0.859262032 0.854149692 0.851117173 0.841279082 0.826802355 0.862001461 0.873137526 26278928 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.200804798 1.175107346 1.144927835 1.182009421 1.158884279 1.171466423 1.137024431 1.158236966 1.163125959 1.161534229 1.141482596 1.17394852 1.132254432 1.153681406 1.12243976 1.151926224 1.188934873 1.156043868 380683425 pgk Phaeospirillum molischianum DSM 120 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Phaeospirillum;species:Phaeospirillum molischianum; 1.278125723 1.285369577 1.250925528 1.25418058 1.267179115 1.250807332 1.24496922 1.266947126 1.252065514 1.246010828 1.231106269 1.269633087 1.235379279 1.215303315 1.231086263 1.255772953 1.260522469 1.204431796 308921887 vdh Ralstonia sp. 5_7_47FAA Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 1.020431572 1.080158744 1.106819155 1.049173885 1.042451966 1.088545708 1.067700798 1.064018965 1.022812043 1.083214251 1.030569836 1.048178954 1.022971938 1.006021136 0.98896335 1.064856882 1.220881075 1.071834199 384080531 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.934743226 0.941698018 0.944736407 0.931228648 0.937433692 0.956970103 0.935989159 0.934292186 0.915779376 0.953271747 0.956502925 0.919671786 0.918952281 0.8737748 0.877597475 0.890508598 0.943001165 0.900122372 262078056 chitinase Haliangium ochraceum DSM 14365 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Kofleriaceae;genus:Haliangium;species:Haliangium ochraceum; 0.968488468 0.923288121 0.955826583 0.967967679 0.973141883 0.969315966 0.872285466 0.961845629 0.945001656 0.95172269 0.874566931 0.944406009 0.939303539 0.903032645 0.876644213 0.896449558 0.995758786 0.989565367 376385803 catb Klebsiella oxytoca 10-5245 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella oxytoca; 1.021457128 1.005341352 0.948841628 1.026392878 0.942370722 0.97499282 0.971004946 0.98636815 0.976406481 0.966535969 0.927116246 1.008979348 0.936758117 0.957109065 0.942972572 0.963376047 0.997516934 1.001077076 357080263 tfda Frankia sp. CN3 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 1.019816758 1.071430895 0.996316406 1.012837741 1.045209839 1.206791747 1.040931958 0.988922621 0.970358436 1.065086881 1.058253794 1.078078354 1.017582738 1.084102065 1.008724733 1.039546034 0.995584017 1.058742694 302413097 pel_Cdeg Verticillium albo-atrum VaMs.102 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticilium;species:Verticillium albo-atrum; 1.014051755 0.95278595 0.973169568 0.999092396 0.976612154 1.030781015 0.934577077 0.968852022 0.996496981 0.950559583 0.920610476 1.010066437 0.989484468 0.984347747 0.994034118 0.984873434 1.027764242 1.014869513 84515365 FBPase Loktanella vestfoldensis SKA53 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Loktanella;species:Loktanella vestfoldensis; 1.305019243 1.255158506 1.261330513 1.280295688 1.219178242 1.270280296 1.23130082 1.273278482 1.26245902 1.241882786 1.224651905 1.270674607 1.195587657 1.206351757 1.168751144 1.225550989 1.285667777 1.260377426 119483752 pme_Cdeg Neosartorya fischeri NRRL 181 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 0.86383935 0.881862284 0.862135766 0.828140814 0.855890307 0.829392669 0.801767755 0.796610447 195541895 nosz uncultured bacterium 1042 Nitrogen Denitrification NA superkingdom:Bacteria; 0.813890287 0.808986793 0.832301817 0.821073463 0.837150651 0.812346681 0.817365743 0.818359192 0.834219022 0.870986475 0.821321336 0.855542383 0.821135422 0.845401665 254948566 mannanase Dyadobacter fermentans DSM 18053 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Dyadobacter;species:Dyadobacter fermentans; 1.269603038 1.219412037 1.220000414 1.211317248 1.20533585 1.180442821 1.135757402 1.193330981 1.210525242 1.172701493 1.198387832 1.211799831 1.18291329 1.154761741 1.127314647 1.18122919 1.217515158 1.192149173 91800661 arsc Nitrobacter hamburgensis X14 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter hamburgensis; 0.931668354 0.877223906 0.953935408 0.776107538 17936815 ara Agrobacterium tumefaciens str. C58 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 0.825122998 0.838006295 0.82669584 0.822727538 0.801573212 0.836684144 0.852966839 0.860925926 0.808843559 329904943 GAPDH_Calvin Oxalobacteraceae bacterium IMCC9480 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae; 0.960128091 0.946289724 0.977864753 0.986773238 0.958755145 0.961811683 0.96119157 0.953778036 0.955571954 0.923220137 0.982590743 0.9775857 0.965273008 0.95924271 0.929449471 0.965335563 0.972544423 0.946982845 340778103 tktA Acetobacter aceti NBRC 14818 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acetobacter;species:Acetobacter aceti; 1.114672605 1.066413617 1.092329166 1.138758428 1.10756975 1.109174326 1.094230733 1.125538906 1.122615201 1.073474414 1.059726797 1.122940933 1.065995786 1.041470713 1.062628588 1.089983675 1.104879349 1.059747622 378727912 chnb Exophiala dermatitidis NIH/UT8656 Organic Remediation Other Hydrocarbons NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Chaetothyriales;family:Herpotrichiellaceae;genus:Exophiala;species:Exophiala dermatitidis; 0.921355215 0.886570413 0.926405463 0.939920235 0.92585546 0.926386645 0.923532298 0.911474476 0.930260322 0.90506547 0.875094162 0.896249213 0.870603898 0.905902524 0.872101234 0.945784726 0.945371612 341926020 chitinase Chitiniphilus shinanonensis Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Chitiniphilus; 0.852486825 0.879179987 0.901771859 0.827168629 0.898017858 0.870096657 0.888274531 0.837364 226347140 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.992993782 0.995988759 0.958625224 1.077419663 1.046725731 0.98201895 1.058324828 0.959920276 1.010392376 0.998995156 1.015145604 1.025660474 1.035450621 0.935179768 0.91372541 0.939007136 1.011887596 0.926213829 333386139 terc Centipeda periodontii DSM 2778 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Centipeda;species:Centipeda periodontii; 1.322088144 1.301246765 1.314651081 1.346184858 1.318417618 1.287183313 1.298070853 1.31830862 1.305959814 1.317992218 1.298795682 1.341018092 1.30264253 1.257865305 1.287149239 1.283541658 1.289918813 1.261566489 226226488 acetylglucosaminidase Gemmatimonas aurantiaca T-27 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Gemmatimonadetes;class:Gemmatimonadetes;order:Gemmatimonadales;family:Gemmatimonadaceae;genus:Gemmatimonas;species:Gemmatimonas aurantiaca; 1.094932577 1.046065997 1.043125304 1.129373559 1.009333976 1.060307954 1.024686025 1.124425808 1.066977497 1.028504115 1.00063899 1.047597782 1.029069237 0.991281405 1.003919948 1.058601522 1.083626744 1.039592275 376401100 pcag Klebsiella oxytoca 10-5250 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella oxytoca; 0.891819754 0.898702179 0.927187808 0.864688349 0.800608761 0.891604315 0.830845186 0.895788472 0.911612172 0.876390353 0.854113037 0.856160535 0.825981975 0.843226236 0.874203286 0.905745094 0.924974101 261822764 cysJ Pectobacterium wasabiae WPP163 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium wasabiae; 0.80345563 0.812878546 0.826011224 0.856301829 0.777730876 0.855801474 0.836726059 0.840168587 0.862629785 0.841302006 0.84515575 0.801252377 0.862115466 317392171 rgh Bacillus sp. BT1B_CT2 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 0.827080848 0.855259253 0.845915437 0.795935605 0.848597256 0.883310289 0.800789388 0.811263074 0.786898331 0.840036288 0.865763129 240170216 cutinase Mycobacterium kansasii ATCC 12478 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium kansasii; 0.855558305 0.815450735 0.827774697 0.903114122 0.860382577 0.858520723 0.831014445 0.8494312 0.842439698 0.864726989 0.8747512 0.860184462 0.826477261 0.817333825 0.833952448 0.846360937 0.881121783 0.874768692 329945430 amyA Actinomyces sp. oral taxon 170 str. F0386 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 170; 0.817126467 0.888670051 0.84678473 0.791367251 0.835062697 0.809271343 0.836805864 0.872391945 0.853463682 328886664 pme Streptomyces venezuelae ATCC 10712 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces venezuelae; 1.235771349 1.224635362 1.202891076 1.189337468 1.194928779 1.223701501 1.186838878 1.191732909 1.177362714 1.181230362 1.190745553 1.172510347 1.173941877 1.146927882 1.121198657 1.17762316 1.25243675 1.209988678 357590129 ppx Corynebacterium nuruki S6-4 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium nuruki; 0.925191758 0.895310593 0.869534421 0.925106989 0.882049868 0.872744635 0.835132434 0.884004027 0.904371998 0.871367405 0.841134134 0.908341248 0.896605329 0.882320227 0.861561352 0.892050852 0.89106832 0.923344533 14276188 dsra Desulfosarcina variabilis Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfosarcina; 1.054292439 0.975655926 0.979491804 1.025056711 0.976337948 0.987798645 0.992387152 1.023712597 0.997227855 0.990986475 0.973670896 0.990412033 0.959366082 0.95371078 0.949311777 0.956707302 1.029204473 1.006164014 76166398 ppx Chloroflexus aurantiacus J-10-fl Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aurantiacus; 0.922477309 0.929465906 0.911529429 0.982701041 0.937253286 0.974138231 0.928036607 0.932040729 0.937079033 0.921316864 0.935159499 0.916649271 0.903936686 0.888036244 0.85584194 0.910239798 0.959814052 0.922020597 145963521 FBPase Vibrionales bacterium SWAT-3 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales; 0.805594388 0.815864235 0.880963666 0.840574365 0.823146052 0.911942656 0.813499075 0.848683157 0.856063781 197712107 amyA Streptomyces sviceus ATCC 29083 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 1.30435817 1.258913896 1.245464542 1.281772328 1.254235132 1.27098174 1.241137888 1.252454644 1.247301934 1.262501602 1.25270655 1.235511096 1.204493856 1.186793737 1.172102371 1.23567241 1.263949322 1.217574432 115378016 ppx Stigmatella aurantiaca DW4/3-1 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 1.026852485 1.00777581 1.017249166 1.022304471 1.002892396 1.033431679 1.049954752 0.991876953 1.02189813 0.981009248 0.97698926 0.969324538 0.990880389 0.97530925 0.998573458 0.9832904 1.024680135 0.982418349 373103032 TIM Cupriavidus basilensis OR16 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus basilensis; 1.117903427 1.063456479 1.08451818 1.094339948 1.11132246 1.114137212 1.121078414 1.079815571 1.088889583 1.11578749 1.099025508 1.103110669 1.087142162 1.060448158 1.065224394 1.076580686 1.131124978 1.122145799 372475504 Sir Opitutaceae bacterium TAV5 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 0.946174031 0.887955798 0.87186396 0.933029039 0.93580173 0.903460692 0.952659752 0.942396464 0.95152067 0.868289497 0.888131663 0.901528085 0.915146233 0.81949279 0.799460309 0.908851692 0.924932754 345864636 fccab endosymbiont of Tevnia jerichonana (vent Tica) Sulfur Sulfide Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;species:endosymbiont of Tevnia jerichonana; 1.077844744 1.087830316 1.060586921 1.070785168 1.100609718 1.136797206 1.048138015 1.061579472 1.078702867 1.072563804 1.069316917 1.114948545 1.036181908 1.056837007 1.02174077 1.0591349 1.087566565 1.088469815 282600764 cellobiase Subdoligranulum variabile DSM 15176 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Subdoligranulum;species:Subdoligranulum variabile; 0.96394839 0.932981809 0.937378862 0.965978714 0.97971241 1.038781621 0.978666717 0.991458608 0.936574128 0.993488791 0.98280559 0.926644007 0.92764076 0.991875366 0.921660812 0.960815187 0.974687092 0.964921491 379045194 cysJ Frateuria aurantia DSM 6220 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Frateuria;species:Frateuria aurantia; 0.892156126 0.859483423 0.865197516 0.894598067 0.878665079 0.89313895 0.89100897 0.898545036 0.895597274 0.921171522 0.864603201 0.893015401 0.829461801 0.894127354 0.851617071 0.880517933 0.858240079 0.907670263 388445805 amyA Rhodanobacter sp. 116-2 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Rhodanobacter; 0.848240756 0.966648225 0.862623527 0.843967317 0.927331033 0.847425158 0.776634646 0.92441334 0.903626806 0.894884119 0.865837641 0.834273723 0.897818316 116805049 xylanase Chaetomium cupreum Carbon Cycling Carbon degradation Hemicellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium; 0.83558786 0.801003298 0.809481583 115368245 chitinase Stigmatella aurantiaca DW4/3-1 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 0.890468145 0.919570472 0.886942588 0.924693606 0.889186623 0.867775629 0.854047983 0.977382477 0.916019854 0.882114572 0.894608233 0.872707963 0.835197674 0.850137461 0.853485618 0.819241992 0.946400914 0.926326159 377523013 cmci Gordonia otitidis NBRC 100426 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia otitidis; 0.934642926 0.997757587 0.953588738 0.956526905 0.952699343 0.968878922 0.897244902 0.893086048 0.862547728 0.953052292 0.904575907 0.963455237 0.887735058 0.862271706 0.893703794 0.938450024 0.901560955 0.909359131 29293450 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 1.111080177 1.146186599 1.106342482 1.123383478 1.102953012 1.114632525 1.056548044 1.094528407 1.081705145 1.088181844 1.074918345 1.106727589 1.09662845 1.038162937 1.058822813 1.088955237 1.114814411 1.111789803 407767621 alkb Alcanivorax hongdengensis A-11-3 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax;species:Alcanivorax hongdengensis; 0.9103798 0.912150153 0.930755897 0.908095498 0.903143573 0.89935015 0.905006957 0.956556817 0.921512041 0.943502822 0.893556708 0.882855631 0.867855284 0.862986964 0.846119761 0.889567 0.954586314 0.927588365 66766709 mdld Xanthomonas campestris pv. campestris str. 8004 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas campestris; 0.836408097 0.923435096 0.838484081 0.831375257 0.849011573 0.780942378 0.877232972 164598104 exoglucanase Infundibulicybe gibba Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Tricholomataceae;genus:Infundibulicybe; 0.853181179 0.808004645 0.852679971 0.837921959 349586286 mcra uncultured methanogenic archaeon Carbon Cycling Methane Methanogenesis superkingdom:Archaea;phylum:Euryarchaeota; 1.06761514 1.043957406 1.06947205 1.090432899 1.069472353 1.14061332 1.06165965 1.069958052 1.062974273 1.054486828 1.071266421 1.096415053 1.061959282 1.084951907 1.05108053 1.054051473 1.109548748 1.038901085 357385504 GAPDH_Calvin Pelagibacterium halotolerans B2 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Pelagibacterium;species:Pelagibacterium halotolerans; 0.840897461 0.922099542 0.857712524 0.896047509 0.906669444 0.925070388 0.847147152 0.898698871 0.957936872 0.933155654 0.888375394 0.931350749 0.855145316 0.859747859 0.830126067 0.894913187 0.876869233 0.931496833 92911379 alkb Mycobacterium sp. JLS Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 1.036081942 1.098922603 1.021558806 1.017342645 1.029749104 1.091986591 1.021990437 1.035172245 0.989642843 1.073279818 1.025747588 1.055705335 1.027648276 1.021918143 1.025426354 1.024438742 1.031794908 1.068726687 342316506 aoxb uncultured bacterium Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 1.045155801 0.953884618 0.957834174 1.014606236 0.948698404 0.968858157 1.000471899 0.983196517 0.984997314 0.964374176 0.951435837 0.974800563 0.947328834 0.956832473 0.954719463 0.952496733 1.00013421 0.944373488 219545143 dsra Methanosphaerula palustris E1-9c Sulfur sulfite reduction NA superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;family:Methanoregulaceae;genus:Methanosphaerula;species:Methanosphaerula palustris; 0.778538661 0.84573031 0.790196112 0.803893993 0.895745437 0.783837184 0.83268036 381372067 poba Actinoplanes missouriensis 431 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes;species:Actinoplanes missouriensis; 1.104899892 1.092719465 1.07732002 1.048644159 1.016982999 1.052570298 1.005699583 1.045202955 1.055261052 1.07325227 1.027721067 1.085779063 1.027145814 1.070416486 1.055089355 1.047252667 1.064170695 1.089424828 99030605 ppk uncultured bacterium Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria; 1.098480773 1.035834003 1.073824948 1.102349533 1.057731028 1.095087515 1.087162563 1.11517114 1.076277128 1.061436261 1.06045783 1.085845913 1.014997861 1.031684909 0.982872195 1.027128296 1.11222547 1.08411535 333736834 ara Treponema azotonutricium ZAS-9 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema azotonutricium; 0.912116051 0.89263498 0.892618805 0.866776102 0.869298316 0.895816727 0.865799566 0.847446027 0.902400521 0.890397207 0.862221734 0.868119388 0.863371831 0.894948587 0.8515567 0.896683565 0.931334862 380774727 amyA Microbacterium laevaniformans OR221 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Microbacterium;species:Microbacterium laevaniformans; 1.27229609 1.258007073 1.274873257 1.272368024 1.255203307 1.300236778 1.264946587 1.259294744 1.225151739 1.267802546 1.268671877 1.289354425 1.220086888 1.239857693 1.2201212 1.259375452 1.2420227 1.237724888 88855479 phenol_oxidase marine actinobacterium PHSC20C1 Carbon Cycling Carbon degradation Lignin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria; 0.864236592 0.870864652 0.84259 0.865566715 0.828994576 0.865497742 0.839446873 0.882795188 0.858802713 0.817325378 0.840047396 0.834400991 0.855157132 0.798545355 328939875 pula Paenibacillus sp. HGF5 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 0.82040168 0.876525081 0.830842594 0.802051325 0.85978712 0.8191581 0.851610948 393720754 chnb Sphingomonas echinoides ATCC 14820 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas echinoides; 0.981203687 0.78245634 0.820048974 0.850832596 0.831764584 0.905125928 0.897109987 0.877687285 0.890002612 0.837329118 0.844461072 0.817559067 0.859330333 0.882362594 0.831148378 296415448 phospholipase_C_fungi Tuber melanosporum Mel28 Carbon Cycling Carbon degradation Phospholipids superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Pezizomycetes;order:Pezizales;family:Tuberaceae;genus:Tuber;species:Tuber melanosporum; 0.839198736 0.826002455 0.824684116 0.781429884 0.84005367 0.836982925 0.854835434 0.799962587 0.809961827 0.884479427 0.900110475 0.815388854 0.859827111 0.890200933 0.80424253 0.822009179 169616334 cutinase Phaeosphaeria nodorum SN15 Carbon Cycling Carbon degradation Cutin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Phaeosphaeriaceae;genus:Parastagonospora;species:Parastagonospora nodorum; 0.92529015 0.918213656 0.910274579 0.941610202 0.835402638 0.9257214 0.854558326 0.885052466 0.937912976 0.882486903 0.855310186 0.841707503 0.827674736 0.887104976 0.813507465 0.855205584 0.925333395 0.971235302 84180621 actin_Stramenopiles Lagenidium giganteum Other Phylogenetic NA superkingdom:Eukaryota;order:Lagenidiales;family:Lagenidiaceae;genus:Lagenidium; 1.005822391 1.009963897 1.004038234 1.006265522 1.014627918 0.999515492 0.969990326 1.010835808 0.968978564 0.954606385 1.013876466 1.05929494 0.960419656 0.979375356 0.978687978 0.97422395 0.997091884 0.984004782 117648361 mer Acidothermus cellulolyticus 11B Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Acidothermaceae;genus:Acidothermus;species:Acidothermus cellulolyticus; 0.816198975 0.787487355 0.838788957 0.798717575 0.837930876 0.809263784 259907753 ppk Erwinia pyrifoliae Ep1/96 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia pyrifoliae; 1.126392247 1.038106415 1.143900261 1.136463127 1.13462997 1.136992223 1.132565441 1.181087043 1.139872758 1.101100257 1.123012666 1.195038934 1.120898422 1.107038301 1.100863292 1.159658099 1.156158441 1.068988887 270511551 chitinase Streptosporangium roseum DSM 43021 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 0.89951134 0.939429165 0.925964212 0.947157358 0.943995035 0.910753524 0.919402088 0.950904076 0.931653292 0.902996936 0.937241156 0.932101609 0.899396962 0.899002476 0.910771726 0.903211488 0.93099776 0.876527479 209516215 cellobiase Burkholderia sp. H160 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 1.308864209 1.287918976 1.309875037 1.27110179 1.282486817 1.320685622 1.267033267 1.289461066 1.253567278 1.267414058 1.238807084 1.249376933 1.254585478 1.243825055 1.196048877 1.23301004 1.290015401 1.289801104 359423324 bphd Gordonia amarae NBRC 15530 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia amarae; 1.198881571 1.131884077 1.15485065 1.145345609 1.176768456 1.177782915 1.177073283 1.191194996 1.122421135 1.160188046 1.163067041 1.157962075 1.118765507 1.110956273 1.070912345 1.094681001 1.142424003 1.114144141 242810693 ara Talaromyces stipitatus ATCC 10500 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 0.919959824 0.919459857 0.860879871 0.926883747 0.910904572 0.908751727 0.936750725 0.942862928 0.914867107 0.918789684 0.905390588 0.913102472 0.897729952 0.858878269 0.838679379 0.825603756 0.901031604 77382554 xyll Pseudomonas fluorescens Pf0-1 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 1.010818128 0.99666767 0.98704452 0.960698825 0.965182604 0.956766807 0.955646927 0.899499177 1.012434469 0.974755899 0.981247682 0.910390928 0.894637128 0.855146548 0.870130575 0.851241331 1.007885345 1.005958563 21111346 pcag Xanthomonas campestris pv. campestris str. ATCC 33913 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas campestris; 0.906167482 0.922360017 0.820450378 0.908351758 0.910946881 0.821861947 0.875690701 0.922209205 0.895019217 0.920983296 0.834479051 0.888620063 0.957926133 300024641 fthfs Hyphomicrobium denitrificans ATCC 51888 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium;species:Hyphomicrobium denitrificans; 1.006961006 0.897585967 0.929841247 0.93917105 0.952827785 1.024425313 0.948375779 0.921796206 0.92378381 1.006913182 1.007626719 0.996419958 0.926327243 0.893240135 0.819692374 0.965190596 0.953994988 0.910670487 33391371 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.104057678 1.110530913 1.064870407 1.099406978 1.022882142 1.072944295 1.009960908 1.075698766 1.108010717 1.044664216 1.038397509 1.043600799 1.040829596 1.025684402 0.996950608 1.041461802 1.100427636 1.075285211 239519263 amyA Clostridiales bacterium 1_7_47FAA Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales; 1.140979602 1.110287909 1.071827522 1.120486008 1.142261303 1.188627864 1.143924938 1.202959529 1.132814269 1.15471276 1.095578558 1.101958653 1.163087957 1.135095341 1.114982464 1.138538782 1.163881156 1.136519902 294870812 actin_Perkinsea Perkinsus marinus ATCC 50983 Other Phylogenetic NA superkingdom:Eukaryota;order:Perkinsida;family:Perkinsidae;genus:Perkinsus;species:Perkinsus marinus; 0.814691439 0.898152934 0.888004414 0.898459024 0.8844961 0.92879942 0.885251891 0.844595983 0.801504477 0.871161838 0.853016321 0.876042226 0.860556535 0.817141993 0.843786963 0.83748872 0.858141879 0.956106945 385666689 ppx Streptomyces tsukubaensis NRRL18488 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces tsukubaensis; 1.335634645 1.326575563 1.275893096 1.287400844 1.258602105 1.283572042 1.239756618 1.251684432 1.260073749 1.278295454 1.241842031 1.264954819 1.228715092 1.236260785 1.20519587 1.245194218 1.277702221 1.289591644 117937828 chitin_deacetylase_fungi Mortierella verticillata Carbon Cycling Carbon degradation Chitin superkingdom:Eukaryota;kingdom:Fungi;order:Mortierellales;family:Mortierellaceae;genus:Mortierella; 1.144889292 1.146625577 1.149089732 1.178659301 1.105803046 1.170032295 1.109371427 1.128278842 1.14068785 1.108728697 1.122758369 1.127422911 1.123883763 1.09367628 1.062607343 1.097753053 1.171455436 1.111129872 2182531 tktA Sinorhizobium fredii NGR234 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium fredii; 0.985862714 0.964018353 0.983260001 1.046629007 0.946904471 0.98988302 0.977755123 0.995911619 1.01926205 0.990088121 0.992878638 1.024627698 0.922138516 0.933148127 0.897927747 0.926892339 1.008387848 0.954296004 381380585 exaa(moxf) Rubrivivax gelatinosus IL144 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Rubrivivax;species:Rubrivivax gelatinosus; 0.869219788 0.916382065 0.89775388 0.945154775 0.835879176 0.936315217 0.917383304 0.843676364 0.933125112 1.005401268 0.909573942 0.881219111 0.834303709 0.879404877 0.902246159 0.867781048 0.90902725 0.881864686 289549223 ccl Thermocrinis albus DSM 14484 Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Aquificaceae;genus:Thermocrinis;species:Thermocrinis albus; 0.975114284 0.986188627 0.958873573 0.988658228 0.979721983 0.970581594 0.961627053 0.985763428 0.991730959 1.002398992 0.992463785 1.023485224 0.966189248 0.939276418 0.931003364 0.919217191 1.030081053 0.971084113 46917278 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.824458206 0.846204198 0.95595891 0.845363186 0.818941989 0.90836072 0.837155447 0.80254386 0.851942355 0.874190728 0.863959386 0.855458814 0.792489395 0.841155808 0.867553599 0.911418655 0.876497491 347579367 vana Gluconacetobacter xylinus NBRC 3288 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter xylinus; 0.806532702 0.826734506 0.831114215 0.848131857 0.785847267 0.834837606 0.843073304 0.827749916 0.837395656 226720071 catechol_b Azotobacter vinelandii DJ Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Azotobacter;species:Azotobacter vinelandii; 1.051725631 1.019495625 0.998686996 1.072393239 0.998875421 1.038173351 1.010722419 1.032313095 1.059757138 1.023335851 0.975528916 1.039945673 0.98470347 0.994446654 0.990766456 1.021963132 1.044348257 1.002969393 77378679 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.94071088 0.938946569 0.905978182 0.92172771 0.910193875 0.906167278 0.903245839 0.885657048 0.907114337 0.901535507 0.90616384 0.92638183 0.841657306 0.852737943 0.818978738 0.926313576 0.973132837 197757814 pcpb Streptomyces sp. Mg1 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 0.961619196 0.920315479 0.942704654 0.925317462 0.860964995 0.8952707 0.81229739 0.880274498 0.926169125 0.929724705 0.915421837 0.873997776 0.92393041 0.876460531 0.875847971 0.871317404 0.954593016 0.942047 295674029 phospholipase_A2_fungi Paracoccidioides brasiliensis Pb01 Carbon Cycling Carbon degradation Phospholipids NA 0.829810061 0.854783576 0.892304826 0.81366937 0.799644121 0.871314883 0.87428611 0.826033974 0.859873706 0.899060223 254463156 SoxC Rhodobacterales bacterium HTCC2083 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 0.958096537 0.957221903 0.992483802 1.024072136 0.969658463 0.949318578 0.951858892 0.958760598 0.951158317 0.94309319 0.954007859 0.963906147 0.956458643 0.925651071 0.934822523 0.976870985 1.01273523 0.951729435 288919390 xamo Frankia sp. EUN1f Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 0.764606516 0.793993739 99030642 ppk uncultured bacterium Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria; 0.923858648 0.951866136 0.929400604 0.928140619 0.849583775 0.912965019 0.89569894 0.906621384 0.919449035 0.94775933 0.865725187 0.920809648 0.880067385 0.891662421 0.835868259 0.917917543 0.958405538 0.97289081 170777715 ppx Leptothrix cholodnii SP-6 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Leptothrix;species:Leptothrix cholodnii; 1.446776801 1.444354465 1.388049509 1.429127966 1.397121298 1.471943377 1.387826287 1.369312863 1.404821806 1.41187032 1.407980679 1.41162 1.389051447 1.395069137 1.367066592 1.408814312 1.432212684 1.407151118 222086184 xylanase Agrobacterium radiobacter K84 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 0.768620605 0.825471435 0.797729255 0.859983673 0.762751487 0.804201901 0.836118205 372472983 RgaE Opitutaceae bacterium TAV5 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 0.849463001 0.840360529 0.853650928 0.873858224 0.877188591 0.897225215 0.878707842 0.862398707 0.86818701 0.855860605 0.857354478 0.876178457 0.98174878 0.808279673 0.848420471 0.817494187 0.884699849 0.884506104 332969565 gdh Kingella kingae ATCC 23330 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Kingella;species:Kingella kingae; 0.862290454 0.882177607 0.929389798 0.922073234 0.869577305 0.868964442 0.892270347 0.918480792 0.939757063 0.881476169 0.979918321 0.901271261 0.822815532 0.875953646 0.87835805 0.931887935 1.070796213 0.868850621 50954654 terc Leifsonia xyli subsp. xyli str. CTCB07 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Leifsonia;species:Leifsonia xyli; 0.848273394 0.831854762 0.839862569 0.895719109 0.847483453 0.848738306 0.895021201 0.849440265 0.84077425 0.84426994 0.814608499 0.822461691 0.856362941 0.888893516 334704324 mer Aeromonas caviae Ae398 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas caviae; 0.849590775 0.860423632 0.906088064 0.877881207 0.856792015 0.840064736 0.821639519 0.849220228 0.900839796 0.866944828 0.839825967 0.813254488 0.881850929 0.879062124 38906707 chne Rhodococcus sp. TK6 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 0.868737093 0.82143647 0.819641698 0.807283903 0.837952264 0.823686021 0.830076129 0.79405652 0.832508772 0.850027619 0.849235977 0.859863564 0.807747542 0.792334472 0.862286368 0.873308124 335339811 rgl Halopiger xanaduensis SH-6 Carbon Cycling Carbon degradation Pectin superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halopiger;species:Halopiger xanaduensis; 0.879193315 0.832582496 0.875369474 0.859046083 0.79631635 0.836005509 0.860584681 0.867233827 54019345 arsc Nocardia farcinica IFM 10152 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 1.201525288 1.128014475 1.161118514 1.187522455 1.166477825 1.221825404 1.178297315 1.191003191 1.169014301 1.13500798 1.140986882 1.147239082 1.127848686 1.106949377 1.105359667 1.125819795 1.211268783 1.149337342 323387032 pcpe Burkholderia sp. CCGE1001 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 0.958951496 0.987282215 1.046908368 0.939114317 0.967688517 0.903410869 0.93391992 0.944109394 0.905523023 0.929620847 0.884113414 0.896219363 0.817794825 0.868523224 0.820698549 0.854047359 0.9166789 0.921620381 167621704 alkb Caulobacter sp. K31 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 0.858557391 0.821506543 0.823066889 0.864747517 0.818249606 0.837335854 0.847844662 0.827082497 0.863628742 0.836448758 406976418 alkk uncultured bacterium Organic Remediation Others NA superkingdom:Bacteria; 1.11198575 1.033786491 1.035115959 1.055433668 1.049618589 1.07360838 1.015846357 1.049993008 1.037509065 1.020930024 1.008857625 1.036668289 1.029061865 0.98766428 1.02494531 1.017550615 1.070099037 1.045006564 157285383 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.055942379 1.01750664 1.039598873 1.010103512 0.986628015 1.015507229 0.97360336 0.992511911 1.011575911 1.016056132 1.022186136 0.99197525 0.971526779 1.017813214 1.020752778 1.027643168 1.035111024 1.033363847 378549009 ppx Citricoccus sp. CH26A Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Citricoccus; 0.821382434 0.819871465 0.794140428 0.805607136 0.855354703 0.839734064 0.829148715 0.795238424 0.83217984 0.794835806 0.828262098 383824345 one_ring_23diox Mycobacterium xenopi RIVM700367 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium xenopi; 1.378315472 1.354161243 1.345070325 1.331195969 1.324772648 1.339757239 1.307219253 1.292050091 1.34846527 1.32982487 83025958 alkb uncultured bacterium Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria; 1.290189299 1.247643794 1.23438174 1.251468093 1.233746589 1.270763299 1.242065559 1.242395136 1.246065169 1.258232649 1.219381395 1.255361618 1.198018562 1.22510481 1.187369789 1.226799984 1.243871413 1.224092123 255035614 chna Dyadobacter fermentans DSM 18053 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Dyadobacter;species:Dyadobacter fermentans; 0.920226055 0.885057104 0.937035327 0.966397196 0.974851663 0.991430903 1.002959775 1.033098017 0.993800561 0.961456706 0.992989012 0.940864776 0.932477131 0.905102482 0.872444108 0.865276123 0.925430954 0.954895621 134097246 urec Saccharopolyspora erythraea NRRL 2338 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 1.109710565 1.116375413 1.09023451 1.102095219 1.075866071 1.082450663 1.065024585 1.09647604 1.067463146 1.088381264 1.080438067 1.072763982 0.999368715 1.048620979 0.925413588 1.00670589 1.089346156 1.141385107 48926964 narg Halomonas maura Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas; 0.963556408 0.943600491 0.973551733 0.977269336 1.002009653 0.954269569 1.012460921 0.959521296 0.970703852 0.97223862 0.970704179 0.930183228 0.930593088 0.920396469 0.884679897 0.926630324 0.992424419 0.974149086 126667582 arsc Marinobacter sp. ELB17 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter; 0.822841097 0.862178687 0.82665623 0.834052104 0.818209677 0.817961219 0.796184739 0.871022201 0.894874413 123964955 urec Prochlorococcus marinus str. MIT 9303 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Cyanobacteria;order:Prochlorales;family:Prochlorococcaceae;genus:Prochlorococcus;species:Prochlorococcus marinus; 0.790527729 0.796417338 170937098 rgh Podospora anserina S mat+ Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Lasiosphaeriaceae;genus:Podospora;species:Podospora anserina; 0.794157625 0.790584617 0.843051624 0.812407557 383781416 acetylglucosaminidase Actinoplanes missouriensis 431 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes;species:Actinoplanes missouriensis; 0.789948679 0.859461558 0.832635327 0.814672234 359788916 FBP_aldolase Mesorhizobium alhagi CCNWXJ12-2 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium alhagi; 0.880360371 0.922490303 0.894352623 0.922212174 0.804039238 0.858192744 0.803686044 0.969704103 0.942202473 0.910165414 0.94091802 0.894140714 0.908420618 0.84536145 0.840685647 0.874127385 387845490 amyA Fibrisoma limi BUZ 3 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Fibrisoma;species:Fibrisoma limi; 0.782957995 0.806681383 139002709 nifh uncultured nitrogen-fixing bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.823640879 0.871653236 0.780759208 0.812863658 25026984 ppx Corynebacterium efficiens YS-314 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium efficiens; 0.930315323 0.850571575 0.853928699 0.777097332 0.842758928 0.971318713 0.843072771 0.836334083 288316660 pme Enterobacter cancerogenus ATCC 35316 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter cancerogenus; 0.877080148 0.85102169 0.884290116 0.88334827 0.89840807 0.836836943 0.877443291 0.859204312 0.901232278 0.926187811 0.910335344 0.895402853 0.894739811 0.880057235 0.881887928 0.911113259 301795680 arylest gamma proteobacterium HdN1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 0.792720499 0.78369003 0.774810678 0.779276378 229817064 amyA Bifidobacterium angulatum DSM 20098 = JCM 7096 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium angulatum; 0.767648866 0.793565242 0.79954939 0.793912807 116743234 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.886599108 0.88862983 0.906386528 0.849571536 0.873299292 0.835527373 0.832114649 0.883285761 0.851068881 0.884470631 0.841452406 0.878229674 354605336 amyA Alistipes indistinctus YIT 12060 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Rikenellaceae;genus:Alistipes;species:Alistipes indistinctus; 0.803438395 0.801741488 88707325 GAPDH_Euglenozoa Leptomonas costaricensis Other Phylogenetic NA superkingdom:Eukaryota;order:Kinetoplastida;family:Trypanosomatidae;genus:Leptomonas; 0.865283275 0.782466592 157804760 aps_apra Thiobacillus plumbophilus Sulfur adenylylsulfate reductase NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus; 0.980648662 0.882191625 0.804350842 0.908652239 0.810439428 149186396 mer Erythrobacter sp. SD-21 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter; 0.840358317 0.828134184 0.786865234 0.84630428 0.807510276 0.785585707 0.812182188 0.852317449 0.810137845 0.795642434 1.021647173 0.806291805 71366857 amyA Nocardioides sp. JS614 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 0.814864098 0.816534047 0.870406088 0.875296458 0.856804777 0.840427503 0.852114448 0.798606911 0.903377065 206676743 dsrB Rhodobacterales bacterium HTCC2083 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 1.12790058 1.162150672 1.122245521 1.153751715 1.137484505 1.126605795 1.171891889 1.127226938 1.118947051 1.127369119 1.166840286 1.116159551 340781673 ccmL Acidithiobacillus caldus SM-1 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus caldus; 0.853012612 0.796442088 124271095 fthfs uncultured bacterium Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria; 0.878056332 0.838448625 256820252 acetylglucosaminidase Capnocytophaga ochracea DSM 7271 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Capnocytophaga;species:Capnocytophaga ochracea; 0.803234885 0.808857772 0.803672691 0.797011681 0.804515662 0.780474495 0.828028082 39843363 b_lactamase Pandoraea pnomenusa Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Pandoraea; 0.892866219 0.763970495 325696022 amyA Streptococcus sanguinis SK160 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus sanguinis; 0.979131655 0.820641765 0.891089644 0.795352686 260432857 phn Silicibacter lacuscaerulensis ITI-1157 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria lacuscaerulensis; 0.788558509 0.795099923 1.044422748 0.79578559 365174301 amyA Synergistes sp. 3_1_syn1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Synergistetes;class:Synergistia;order:Synergistales;family:Synergistaceae;genus:Synergistes; 0.80372519 0.815014012 73763082 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.827688659 0.792827566 0.823605791 0.800745562 339285341 chitinase Sulfobacillus acidophilus TPY Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XVII. Incertae Sedis;genus:Sulfobacillus;species:Sulfobacillus acidophilus; 0.862273591 0.805294866 0.814602808 0.844386196 0.840260557 31322226 nitrate_reductase Verticillium fungicola Nitrogen N Assimilation NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;genus:Verticillium; 0.84047205 0.822533629 0.868506576 0.848432405 0.905674394 0.809123277 0.866446166 0.865560159 0.854416918 0.79113806 0.82238421 0.909589224 0.845936403 0.828586935 0.858901571 34017126 dsra uncultured bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.789432332 0.809786238 395010015 amie Acidovorax sp. CF316 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 0.801468629 0.839213295 62003573 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.885323989 0.843126758 0.760561238 0.805095956 284041630 endoglucanase Conexibacter woesei DSM 14684 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Solirubrobacterales;family:Conexibacteraceae;genus:Conexibacter;species:Conexibacter woesei; 0.823259077 0.787883072 0.801792292 0.784626988 238617613 actin_Cryptophyta Rhodomonas sp. CCMP768 Other Phylogenetic NA superkingdom:Eukaryota;class:Cryptophyta;order:Pyrenomonadales;family:Pyrenomonadaceae;genus:Rhodomonas; 0.780582582 0.850273198 0.844790973 0.873835865 0.843225097 0.833297021 0.829493102 0.890891411 0.844401842 0.797414799 0.809214901 86281226 phn Rhizobium etli CFN 42 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 0.786954161 0.797694967 113729835 glucoamylase Caulobacter sp. K31 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 0.832416349 0.825950631 0.784103716 0.811465194 0.86559057 0.775723045 0.78970647 0.838653018 327312513 acetylglucosaminidase Prevotella denticola F0289 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella denticola; 0.85044978 0.998993173 374296205 endoglucanase Clostridium clariflavum DSM 19732 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium clariflavum; 0.812358932 0.816969063 0.804513969 4096812 acetylglucosaminidase Streptomyces sp. Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 0.822046211 0.807262352 227338689 gdh Rhizobium sp. NGR234 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium fredii; 0.815165237 0.826884907 46307850 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.855183962 0.867083536 0.87496081 0.834239277 0.864437285 0.811257438 0.912754273 221210608 catechol_b Burkholderia multivorans CGD1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 0.763044738 0.848546016 307157781 mcra Methanoplanus petrolearius DSM 11571 Carbon Cycling Methane Methanogenesis superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;family:Methanomicrobiaceae;genus:Methanoplanus;species:Methanoplanus petrolearius; 0.771463411 0.897907421 162455121 pectinase (pectate_lyase) Sorangium cellulosum 'So ce 56' Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 0.790012299 0.822746144 0.804314277 0.806470608 0.788278265 0.800088014 297551144 vgb Ktedonobacter racemifer DSM 44963 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Chloroflexi;class:Ktedonobacteria;order:Ktedonobacterales;family:Ktedonobacteraceae;genus:Ktedonobacter;species:Ktedonobacter racemifer; 0.810622287 0.828520733 0.840406311 0.838337797 0.800243827 0.789002235 0.813229723 229829442 chitinase Shuttleworthia satelles DSM 14600 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Shuttleworthia;species:Shuttleworthia satelles; 0.785529729 0.802984961 0.819505593 0.826433552 0.783081995 0.828995127 57233751 rd Dehalococcoides ethenogenes 195 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides;species:Dehalococcoides ethenogenes; 0.848471935 0.803324814 0.786444752 0.839824412 146275748 xylanase Novosphingobium aromaticivorans DSM 12444 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium aromaticivorans; 0.784854744 0.839857824 206569701 one_ring_23diox Klebsiella pneumoniae 342 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 0.952660986 1.013768356 0.980134285 1.045072323 1.046934895 0.997800102 1.006103704 1.050730925 0.97995027 1.012080062 1.029253646 288554348 amyA Bacillus pseudofirmus OF4 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus pseudofirmus; 0.799098035 0.884619825 0.892555534 0.858002694 0.787459686 0.827990163 0.91161498 0.849881122 0.826421564 0.900250719 0.86972463 0.826389683 359800461 mult_ring_12DiOx Achromobacter arsenitoxydans SY8 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter;species:Achromobacter arsenitoxydans; 0.815581838 0.794356618 0.823826794 0.787435975 13476748 ppx Mesorhizobium loti MAFF303099 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 0.816539975 0.811979018 170101420 phenol_oxidase Laccaria bicolor S238N-H82 Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Tricholomataceae;genus:Laccaria;species:Laccaria bicolor; 0.747097293 0.815475709 256685013 acetylglucosaminidase Jonesia denitrificans DSM 20603 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Jonesiaceae;genus:Jonesia;species:Jonesia denitrificans; 0.809258071 0.826926842 307770623 FBPase Roseibium sp. TrichSKD4 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseibium; 0.826946679 0.880962383 0.802641657 0.870788607 0.966199724 0.866724298 0.796564129 0.8744363 0.868814603 0.939088976 0.88669345 0.838306637 0.915691241 0.888978365 0.865794925 0.854226342 163791449 amyA Carnobacterium sp. AT7 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Carnobacteriaceae;genus:Carnobacterium; 0.810333254 0.9460714 0.953377789 0.912260116 1.029847478 0.915869436 0.888581628 0.99703967 0.806987908 256728095 ara Nectria haematococca mpVI 77-13-4 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Nectria;species:Nectria haematococca; 0.778308691 0.840402077 0.810186367 0.792363479 0.801713864 0.81254781 312168581 bphF1 Burkholderia rhizoxinica HKI 454 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia rhizoxinica; 0.819702296 0.83845061 0.847933468 0.827247799 0.848413057 0.825234815 0.807797323 0.860813253 22003692 mcra uncultured euryarchaeote Carbon Cycling Methane Methanogenesis superkingdom:Archaea;phylum:Euryarchaeota; 0.980624687 0.838109278 0.824989386 0.864320193 0.896397136 0.821944401 0.82523565 0.848436081 0.828981065 0.887196227 89336804 arra Desulfitobacterium hafniense Y51 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 0.777082163 0.778189348 0.905134113 0.805883297 119469265 amyA Alteromonadales bacterium TW-7 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales; 0.823476634 0.859787862 0.882550575 0.858839385 308198151 phospholipase_D_fungi Scheffersomyces stipitis CBS 6054 Carbon Cycling Carbon degradation Phospholipids superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Debaryomycetaceae;genus:Scheffersomyces;species:Scheffersomyces stipitis; 0.868254732 0.814710437 359460684 CsoS1_CcmK Acaryochloris sp. CCMEE 5410 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Acaryochloris; 0.806108569 0.766493187 345002816 cellobiase Streptomyces sp. SirexAA-E Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 0.868994815 0.835043993 0.87957733 0.822959192 0.886694506 0.840196863 0.853512167 0.858359277 0.850833993 0.877947797 0.861049194 0.811386351 0.789760395 0.86622099 0.840982635 371956511 pcpb Singulisphaera acidiphila DSM 18658 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Singulisphaera;species:Singulisphaera acidiphila; 0.827572919 0.784320118 0.839231726 0.820810738 0.794769665 0.792368412 0.812496746 227822911 amyA Sinorhizobium fredii NGR234 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium fredii; 0.801070637 0.836362062 357078318 vdh Frankia sp. CN3 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 0.943840236 1.010483352 0.98185225 0.911538328 0.958632326 0.940736686 0.960314558 0.969855024 0.970781805 0.889114621 0.946900228 149144097 TIM Roseovarius sp. TM1035 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 0.860661023 0.809349303 0.85902198 0.864370779 0.885827944 0.862891472 0.866130784 0.85380488 0.870060956 0.849401479 0.808986884 0.838562427 0.86357652 283484359 rgh Marssonina brunnea f. sp. 'multigermtubi' Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Dermateaceae;genus:Marssonina;species:Marssonina brunnea; 1.188231274 1.15622187 1.185519284 1.172607686 1.190963201 1.147106471 1.168196838 1.193058692 1.165326338 1.159643412 1.184001646 1.140467708 1.136876878 1.153693173 1.166042832 1.205253008 1.163747087 87302502 rubisco Synechococcus sp. WH 5701 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 0.773876497 0.847841562 0.771836062 0.807897154 0.800625548 0.798822255 0.861435772 39837158 catechol Pseudomonas stutzeri Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.832406895 0.807627193 0.784810976 0.832382527 0.816474893 0.85052549 290962191 pme Streptomyces scabiei 87.22 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces scabiei; 0.896946455 0.81979316 0.830120519 0.833574627 67900452 tannase_Cdeg Aspergillus nidulans FGSC A4 Carbon Cycling Carbon degradation Tannins superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 1.122418703 1.12622425 1.14356551 1.141738717 1.168143296 1.136116342 1.145158333 1.141995395 1.110889135 1.092864905 1.148588586 1.123596663 1.106798242 1.090224955 1.106037035 1.158481245 1.119294483 330427321 ppx Pusillimonas sp. T7-7 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Pusillimonas; 0.85548151 0.770630385 0.810273734 0.794906895 256396578 limeh Catenulispora acidiphila DSM 44928 Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 0.776264999 0.840787984 0.863344024 0.807871639 0.827193489 0.828922656 309245852 RgaE Paenibacillus polymyxa SC2 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus polymyxa; 0.825243725 0.830021369 0.810384511 0.837558237 0.807965057 0.796846602 0.825362499 0.856498158 56798383 catechol_b uncultured bacterium Organic Remediation Aromatics Other aromatics superkingdom:Bacteria; 0.785791219 0.802015556 255707282 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.905503805 0.90486901 1.059476311 0.887227707 0.883387891 0.86323361 0.873818245 0.831174734 0.886466477 0.826779981 0.859644888 0.816211337 0.857061056 0.805650943 0.918961587 116696222 poba Ralstonia eutropha H16 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 1.11669061 1.064991667 1.07838326 1.078028615 1.085098279 1.097345927 1.12589394 302194596 RgaE Brevundimonas subvibrioides ATCC 15264 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Brevundimonas;species:Brevundimonas subvibrioides; 0.811667922 0.81159245 109290302 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.788722803 0.816277422 333607334 arsm Paenibacillus sp. HGF7 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 0.795775147 0.876662169 40287430 amyA Brevibacterium helvolum Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Brevibacteriaceae;genus:Brevibacterium; 0.792039957 0.793887739 0.815972527 0.820060023 330992914 tktA Gluconacetobacter sp. SXCC-1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter; 1.229052328 1.167630135 1.183005156 1.214163454 1.176402329 1.143514888 1.201375826 1.203566697 1.206197079 1.177873203 1.178267041 1.128755043 1.177076674 1.190627469 260433826 FBP_aldolase Silicibacter lacuscaerulensis ITI-1157 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria lacuscaerulensis; 0.809451634 0.843427303 0.837146929 0.783264656 0.758210023 0.799095179 169637180 fthfs Candidatus Desulforudis audaxviator MP104C Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Candidatus Desulforudis;species:Candidatus Desulforudis audaxviator; 0.807171594 0.781473722 0.928105444 0.835165921 0.812348606 0.914906627 0.794021813 0.811520531 0.878004455 0.822758706 0.796726172 0.878594798 150036102 SoxB Ectothiorhodospira mobilis Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Ectothiorhodospira; 1.220775382 1.287858912 1.210324164 1.198530006 1.25430159 1.236921357 1.202811799 1.197744847 1.250290614 1.205453642 167762605 amyA Bacteroides stercoris ATCC 43183 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides stercoris; 0.871343872 0.839450568 0.74927183 0.90550483 0.879625937 0.866531645 0.814761348 0.870809711 0.900564135 0.85732396 0.85364348 0.867404425 0.85693744 0.862722125 0.846208601 0.870355768 260652064 pectinase (pectate_lyase) Streptomyces scabiei 87.22 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces scabiei; 0.859198472 0.840679342 0.82950179 398388171 badh Zymoseptoria tritici IPO323 Organic Remediation Aromatics Other aromatics superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Capnodiales;family:Mycosphaerellaceae;genus:Zymoseptoria;species:Zymoseptoria tritici; 1.159918097 1.166397719 1.15274442 1.096194262 1.13965582 1.10165194 1.125360995 1.118262841 1.127192122 1.139230165 1.134572174 1.088086345 1.11418628 1.042965281 1.122913049 1.155508366 1.139253173 356699705 amyA Clostridium hathewayi WAL-18680 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hathewayi; 0.856519559 0.804572705 0.839023209 0.828834829 0.845267395 0.815313369 224951066 CsoS1_CcmK Clostridium methylpentosum DSM 5476 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium methylpentosum; 0.795208884 0.820443005 0.808327301 0.786152137 0.871785476 301062270 codh delta proteobacterium NaphS2 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 0.84888572 0.823717929 0.88453978 0.860919582 0.878504122 0.871738653 0.88174488 0.870018326 0.873726402 0.844505075 0.88494779 0.875977881 0.866269578 0.864407717 0.838564546 1.102051953 0.857899468 256685143 arsc Jonesia denitrificans DSM 20603 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Jonesiaceae;genus:Jonesia;species:Jonesia denitrificans; 0.803508209 0.826840995 0.81182246 0.797962983 0.845290718 0.847401022 0.809663494 5420039 bphF1 Streptomyces tendae Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 0.932796873 0.842693743 0.866482874 0.874255776 0.924159977 0.855707559 0.791905326 0.915776585 0.875705766 0.865783973 0.843241946 0.851026618 0.877375656 0.856596691 0.89844759 168700340 amyA Gemmata obscuriglobus UQM 2246 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Gemmata;species:Gemmata obscuriglobus; 0.809906006 0.792170553 0.814501908 0.830859467 260220159 alkb Curvibacter putative symbiont of Hydra magnipapillata Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Curvibacter; 0.84452686 0.807443654 0.807462205 0.805447099 0.772516634 0.803758718 161387253 mer Phaeobacter gallaeciensis BS107 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 1.117831878 1.107979305 1.151666278 1.117928467 1.111498579 1.090264689 1.117821655 1.110791332 1.097017388 1.095404627 1.148519195 1.096228644 1.086551717 1.083703352 1.096100414 1.11840226 1.096875675 62391506 mdld Corynebacterium glutamicum ATCC 13032 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium glutamicum; 0.827443276 0.819237295 344689996 rubisco uncultured bacterium Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria; 0.82745198 0.832089421 388826596 limeh Rhodococcus opacus M213 Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus opacus; 0.82569939 0.776114538 383332280 urec Mycobacterium phlei RIVM601174 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium phlei; 0.767665018 0.871258896 338170985 nitrilase Cupriavidus necator N-1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 0.805331515 0.802766687 167583695 arsc Burkholderia ubonensis Bu Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ubonensis; 0.830290481 0.823186652 338973669 SoxB Bradyrhizobiaceae bacterium SG-6C Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae; 0.79381542 0.787211089 0.798282973 0.809237865 0.811642173 0.816388263 0.841195984 0.795715299 28974732 dsrB uncultured bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.383648956 1.400762924 1.391206519 1.365538504 1.392399473 1.350042304 1.393314112 1.376521523 1.380427579 1.405112239 1.374347058 1.350674782 1.3480209 1.395928263 1.372757462 126715659 atzb Roseobacter sp. CCS2 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 0.792286655 0.886425385 0.827848713 0.838997685 145238728 pcpe Aspergillus niger Organic Remediation Herbicides related compound NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 0.791474556 0.779458957 0.837230639 0.777874066 158426970 arra Bacillaceae bacterium ML-SRAO Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae; 0.872324295 0.843764778 0.798167489 0.860187769 0.846472763 0.849620779 385885772 chitinase Micromonospora lupini str. Lupac 08 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Micromonospora;species:Micromonospora lupini; 0.815342329 0.833405264 0.791126659 0.820022929 160939316 bphF1 Clostridium bolteae ATCC BAA-613 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium bolteae; 0.852992611 0.823588694 0.86309081 0.845925447 0.825571522 0.851334875 0.815263958 0.833979862 0.853159067 0.826120593 151302266 aps_apra Desulforegula conservatrix Sulfur adenylylsulfate reductase NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulforegula; 0.843189691 0.765743338 0.814693631 0.834967486 77378501 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.799419727 0.827748225 0.831499151 0.838947234 356675423 tktA SAR116 cluster alpha proteobacterium HIMB100 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 0.853647058 0.836948553 0.785284948 0.816707033 0.859354606 0.833487541 0.921066596 0.839749009 0.864181457 365922069 ppx Cardiobacterium valvarum F0432 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Cardiobacteriales;family:Cardiobacteriaceae;genus:Cardiobacterium;species:Cardiobacterium valvarum; 0.861204064 0.804303778 139478485 mer uncultured soil bacterium Metal Homeostasis Mercury Detoxification superkingdom:Bacteria; 0.863988053 0.826462069 0.814958258 0.828730453 0.857392286 0.811887477 0.798425404 0.815722011 0.80125415 0.8345753 320105575 alginase Terriglobus saanensis SP1PR4 Carbon Cycling Carbon degradation Alginate superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Terriglobus;species:Terriglobus saanensis; 0.776242016 0.819937409 329940436 merb Streptomyces griseoaurantiacus M045 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseoaurantiacus; 0.822944116 0.839294177 169793358 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.831616642 0.807755291 302407830 cellobiase Verticillium albo-atrum VaMs.102 Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticillium;species:Verticillium alfalfae; 0.830063779 0.801714205 0.803913954 0.789662216 350568629 acetylglucosaminidase Propionibacterium avidum ATCC 25577 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium;species:Propionibacterium avidum; 0.814943489 0.896929742 133911424 endochitinase Saccharopolyspora erythraea NRRL 2338 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 0.831594346 0.78625075 109452404 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.773744829 0.773524178 0.786139192 0.783542758 365859383 poba Acetobacteraceae bacterium AT-5844 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae; 0.799121893 0.843976146 26278924 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.798131179 0.807809048 0.816934984 0.815914241 0.797997623 0.835173797 121713048 protease_serine_fungi Aspergillus clavatus NRRL 1 Carbon Cycling Carbon degradation protein superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 0.904526328 0.840002723 0.809720234 0.87982936 0.787680933 0.871651369 0.820166782 0.830142605 345014949 pcag Streptomyces violaceusniger Tu 4113 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces violaceusniger; 0.790423856 0.781303715 78102023 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.892751824 0.844580489 0.861003238 0.909256232 0.919938862 0.83943299 0.830474553 0.864666892 0.906552542 0.876015525 0.894655546 0.821320882 0.842567298 0.884295592 0.905510987 0.869339844 4204385 xylg Sphingomonas sp. A8AN3 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 0.836681916 0.814762491 0.898790699 0.847074592 0.850849706 0.855002247 0.781766183 0.853182343 0.83915069 0.884857684 0.87423667 0.844641437 0.825940907 0.810440618 0.835305297 63029734 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.800428199 0.871458871 0.796066152 0.800500666 0.802387233 0.798261045 0.826115205 29652570 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.825551617 0.859249761 239736198 alpha_galactosidase_fungi Gibberella sp. F75 Carbon Cycling Carbon degradation Other superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Fusarium; 0.854999313 0.795011774 0.792855144 0.828370281 17431841 nosz Ralstonia solanacearum Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 0.826750587 0.789652581 28975241 exopolygalacturonase_fungi Emericella nidulans Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella; 1.00649088 0.974914984 0.952213137 1.012603898 1.011509281 0.98958141 169759169 bphF1 Pseudomonas putida W619 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 0.858236358 0.823378514 0.879969454 0.865352305 0.800940779 0.859197354 0.866384148 0.853253108 0.82193902 0.794176781 0.812176681 0.87007464 385843024 catechol_b bacterium enrichment culture clone 23CTD Organic Remediation Aromatics Other aromatics superkingdom:Bacteria; 0.814957919 0.846663029 0.882233253 0.789775302 0.837788038 0.827457256 0.851509844 0.860599234 440749233 nosz Mariniradius saccharolyticus AK6 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cyclobacteriaceae;genus:Mariniradius;species:Mariniradius saccharolyticus; 0.817561818 0.862790237 0.793448404 0.843004532 0.829456823 0.844878017 0.866821568 1.086419705 0.818516321 0.836864255 0.785329399 0.803617581 0.848923279 33864500 urec Prochlorococcus marinus str. MIT 9313 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Cyanobacteria;order:Prochlorales;family:Prochlorococcaceae;genus:Prochlorococcus;species:Prochlorococcus marinus; 0.810432267 0.80523083 0.817092881 0.794878916 0.804855359 0.878060947 323489755 pula Planococcus donghaensis MPA1U2 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Planococcaceae;genus:Planococcus;species:Planococcus donghaensis; 0.915260016 0.841649256 46917294 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.809718902 0.848048272 0.918816706 0.831734387 0.804002201 0.843416383 0.925230814 0.854705027 0.862419769 0.888800067 0.830863392 0.817141882 0.911961802 164455584 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 0.846048992 0.774773228 325269701 amyA Prevotella multiformis DSM 16608 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella multiformis; 0.834829542 0.813542061 317049116 tehb Pantoea sp. At-9b Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 0.846540337 0.872077547 0.941467945 0.820330134 0.813731758 0.874831838 0.795407653 0.876364414 0.845202084 0.803519831 0.837778514 0.819972725 0.903055694 0.817751707 0.898379344 46308012 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.843500257 0.863480308 0.840807176 0.846576558 0.825943881 0.833050674 260888701 ppx Selenomonas sputigena ATCC 35185 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas sputigena; 0.859927608 0.809659129 0.80904555 0.784702997 0.806738829 0.800381126 335437311 xylanase Halorhabdus tiamatea SARL4B Carbon Cycling Carbon degradation Hemicellulose superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halorhabdus;species:Halorhabdus tiamatea; 0.819566417 0.828640961 0.805026024 0.814762074 353682250 mcra uncultured methanogenic archaeon Carbon Cycling Methane Methanogenesis superkingdom:Archaea;phylum:Euryarchaeota; 0.884341307 0.802774568 0.790256979 0.853204721 0.76815401 0.813727786 0.759538396 0.776570416 0.831828065 3006039 phenol_oxidase Pleurotus sp. 'Florida' Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Pleurotaceae;genus:Pleurotus;species:Pleurotus pulmonarius; 0.841567151 0.840353239 0.807240186 0.862788924 0.835613689 0.787350944 0.809378023 0.868341475 194277408 catb Rhodococcus sp. DK17 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 0.826574751 0.825884461 116700521 dsrB Syntrophobacter fumaroxidans MPOB Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophobacteraceae;genus:Syntrophobacter;species:Syntrophobacter fumaroxidans; 1.276767416 1.268784566 1.234673907 1.239912939 1.184828741 389575996 mannanase Eubacterium cellulosolvens 6 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Eubacteriaceae;genus:Eubacterium;species:Eubacterium cellulosolvens; 0.808946721 0.842249885 0.818161723 0.82552321 0.802432708 0.799734574 359290840 one_ring_23diox Thermus sp. CCB_US3_UF1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus; 0.8190397 0.820484901 0.807912775 0.840197039 149675743 dehh109 Methylobacterium sp. CPA1 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 0.7481678 0.815856689 374370083 arsc Cupriavidus basilensis OR16 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus basilensis; 0.759815938 0.828142964 0.81958015 0.809799289 0.819916973 0.76238381 0.810050495 372275436 acetylglucosaminidase Pantoea sp. SL1_M5 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 0.894244868 0.815364761 0.812841233 0.871882485 0.894042078 0.802185984 0.83818747 0.843526281 0.891401603 0.897712881 0.866474472 0.936215635 0.826277193 5419982 phn Rhizobium leguminosarum Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 0.789572356 0.781629497 0.778322251 0.807295945 94424450 proO Sphingomonas sp. SKA58 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 0.846960261 0.785781299 0.817471666 1.022927049 0.884151683 0.790020611 0.821060977 332531262 terc Hylemonella gracilis ATCC 19624 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Hylemonella;species:Hylemonella gracilis; 0.780843461 0.854216839 0.864626226 0.791998852 0.833751566 0.85289124 309779882 chnc Ralstonia sp. 5_7_47FAA Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 0.828318852 0.798776011 0.768052502 0.803451791 0.806413124 0.828024726 336118764 urec Microlunatus phosphovorus NM-1 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Microlunatus;species:Microlunatus phosphovorus; 0.916673462 0.838147715 0.851153415 0.838278995 0.777905921 0.867151092 0.847788661 306431383 assa Aromatoleum sp. OcN1 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum; 0.808871188 0.827689565 0.846603737 0.815498719 0.87027146 0.86206704 0.802102285 0.845817851 284036945 acetylglucosaminidase Spirosoma linguale DSM 74 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Spirosoma;species:Spirosoma linguale; 0.980784013 0.913200038 334895446 atzd Salinisphaera shabanensis E1L3A Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Salinisphaerales;family:Salinisphaeraceae;genus:Salinisphaera;species:Salinisphaera shabanensis; 0.830004745 0.807415548 115390593 amyA Aspergillus terreus NIH2624 Carbon Cycling Carbon degradation Starch superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 0.7431294 0.777169212 0.824238856 0.771427324 375308802 amyA Paenibacillus sp. Aloe-11 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 0.791768599 0.853580447 310793135 phospholipase_C_fungi Glomerella graminicola M1.001 Carbon Cycling Carbon degradation Phospholipids superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Glomerellaceae;genus:Glomerella;species:Glomerella graminicola; 0.80887865 0.800559477 206114058 nifh Pseudomonas sp. AF-4B Nitrogen Nitrogen fixation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.837787296 0.859698018 0.843982056 0.815299232 0.798072904 0.917185273 0.845344654 0.804774161 0.831967191 0.816879149 0.806242836 0.843241406 340524861 chitinase Amycolatopsis mediterranei S699 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 0.786060434 0.84218527 375141882 urec Mycobacterium rhodesiae NBB3 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 0.867895416 0.804472923 0.801416583 0.840427034 0.877479307 0.817351811 0.805516661 0.823557764 0.898408613 0.842136723 0.831977344 0.875813913 0.845646246 0.839518565 0.89962707 0.878000764 347733381 napa Desulfovibrio sp. A2 Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 0.797755901 0.813761156 91693851 bphd Burkholderia xenovorans LB400 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 0.795696678 0.794468981 56798497 catechol_b uncultured bacterium Organic Remediation Aromatics Other aromatics superkingdom:Bacteria; 0.845008011 0.803411702 0.778837012 0.865963743 384371440 one_ring_23diox bacterium enrichment culture clone pahAc4 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria; 0.757853009 0.806805993 320105654 amyA Terriglobus saanensis SP1PR4 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Terriglobus;species:Terriglobus saanensis; 0.784891828 0.897162143 0.812034515 0.81088879 0.766309184 0.813218814 378402048 rubisco Rhodospirillum photometricum DSM 122 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum photometricum; 0.779390354 0.825734166 187384863 adpb Stenotrophomonas sp. SMSP-1 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas; 0.81015986 0.787128848 0.784468572 0.773159834 50121937 amyA Erwinia carotovora subsp. atroseptica SCRI1043 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium atrosepticum; 0.779815332 0.957143454 0.802099887 0.816137492 20278787 nifh uncultured nitrogen-fixing bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.821670179 0.798647005 0.833959785 0.789592549 0.826799257 0.82519075 260769120 chitinase Vibrio furnissii CIP 102972 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio furnissii; 1.468292461 1.465677239 1.438148516 1.483451359 1.437072821 1.463323918 1.459151593 1.445496724 1.453215933 1.428969276 1.417550381 1.430880902 1.441757927 1.441608448 39935681 nifh Rhodopseudomonas palustris CGA009 Nitrogen Nitrogen fixation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 0.784514435 0.831661207 0.816300777 0.796948684 0.807555214 0.850196531 113530957 alkk Ralstonia eutropha H16 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 0.821013941 0.890412751 403200916 catechol_b Gordonia rubripertincta NBRC 101908 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia rubripertincta; 0.781654468 0.855925061 0.836265026 0.831298779 126460053 dsra Pyrobaculum calidifontis JCM 11548 Sulfur sulfite reduction NA superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum calidifontis; 0.810425113 0.798973397 119964419 amyA Arthrobacter aurescens TC1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter aurescens; 0.991399113 0.885167372 0.814301123 1.109927155 1.101514954 0.91973786 0.855044073 0.823854938 0.882542136 0.988296091 0.795977047 0.839151377 62906762 dsrB uncultured prokaryote Sulfur sulfite reduction NA 0.832759813 0.815711344 0.80432466 0.817265844 70930916 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.848144952 0.836641536 0.818897618 0.814240609 0.787999265 0.889728023 0.826924057 0.837762791 0.78484822 0.872002126 169793522 napa uncultured bacterium Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria; 0.814055875 0.828730994 0.806896287 0.852321597 77964510 chnb Burkholderia sp. 383 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 0.804357827 0.831656844 163731620 phn Roseobacter litoralis Och 149 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter litoralis; 0.806679089 0.76952701 0.779120254 0.793506697 0.801968505 0.774152188 0.81140768 302574090 amyA Caldicellulosiruptor obsidiansis OB47 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacterales Family III. Incertae Sedis;genus:Caldicellulosiruptor;species:Caldicellulosiruptor obsidiansis; 0.802073058 0.811084111 0.805258973 0.810877902 0.816857951 0.8204748 0.772547538 296763 amyA Micrococcus sp. Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Micrococcus; 0.824460109 0.902779237 0.814496146 0.785776512 315449029 cda Ruminococcus albus 7 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus;species:Ruminococcus albus; 0.80389976 0.853837473 30180742 ppx Nitrosomonas europaea ATCC 19718 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas;species:Nitrosomonas europaea; 0.801031524 0.84982496 0.817711602 0.931192224 0.869449765 0.831372378 0.970686126 0.840211455 0.830926697 0.829033803 0.914109887 0.886092511 0.883263363 0.816496567 149190855 FBPase Vibrio shilonii AK1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio shilonii; 0.860145464 0.816500592 108805625 trzn Rubrobacter xylanophilus DSM 9941 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Rubrobacterales;family:Rubrobacteraceae;genus:Rubrobacter;species:Rubrobacter xylanophilus; 0.966053296 1.051269356 0.952272797 0.960714057 0.966175631 0.984807826 1.011136398 324967195 linb Planctomyces brasiliensis DSM 5305 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Planctomyces;species:Planctomyces brasiliensis; 0.782664508 0.785142082 221736382 fthfs Agrobacterium vitis S4 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium vitis; 0.854804664 0.793544697 118062286 catechol_b Roseiflexus castenholzii DSM 13941 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus;species:Roseiflexus castenholzii; 0.930502767 0.844781766 148242368 Sir Synechococcus sp. RCC307 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 0.794073297 0.806201592 0.796857418 0.771144285 295438937 bphd Burkholderia sp. CCGE1002 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 0.822295552 0.816206081 0.796350542 0.805039523 0.833613599 219950314 alginase Methylobacterium nodulans ORS 2060 Carbon Cycling Carbon degradation Alginate superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 0.842957305 0.814080225 0.828993495 0.807630703 332715725 alginase Agrobacterium sp. H13-3 Carbon Cycling Carbon degradation Alginate superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium; 0.977712999 1.029976004 0.757673229 0.801972912 1.060009662 0.912374616 1.025907312 0.832166539 0.964768473 0.919657418 148260265 alkb Acidiphilium cryptum JF-5 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acidiphilium;species:Acidiphilium cryptum; 0.804331976 0.856368642 0.805205069 144899378 SoxB Magnetospirillum gryphiswaldense MSR-1 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum gryphiswaldense; 0.925950612 0.900221009 0.925305028 0.915474544 0.914685949 0.947752143 0.917134765 0.944207492 0.919079932 0.927911463 0.912867315 0.976234209 0.931597374 0.918779015 0.923322022 0.952747851 325948509 alkk Nocardioidaceae bacterium Broad-1 Organic Remediation Others NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae; 0.783646196 0.783382051 325060856 PRI Agrobacterium sp. H13-3 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium; 0.806095657 0.808977464 392951843 phdci Hydrocarboniphaga effusa AP103 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Sinobacteraceae;genus:Hydrocarboniphaga;species:Hydrocarboniphaga effusa; 0.832979399 0.793967917 0.82060495 0.85024596 0.784805582 0.833343642 0.762678096 0.797155924 0.819003186 67854894 FBP_aldolase Crocosphaera watsonii WH 8501 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Crocosphaera;species:Crocosphaera watsonii; 0.843508348 0.829539737 0.937382055 0.855513075 0.829652534 0.885505747 0.911427971 0.862462155 0.776546685 0.814167199 0.827640946 0.796574227 226245939 bphF1 Rhodococcus opacus B4 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus opacus; 0.836173059 0.780523406 0.765656918 0.812773035 303303313 pmoa uncultured methanotrophic bacterium Carbon Cycling Methane Methane oxidation superkingdom:Bacteria; 0.814975763 0.812088211 0.860663185 0.811037425 0.813678012 0.810253212 123229694 nifh uncultured nitrogen-fixing bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.817308244 0.874902539 0.822167022 0.833222961 0.840684445 0.850078373 0.840660049 0.799456604 0.880139442 334341121 amyA Desulfotomaculum ruminis DSM 2154 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum ruminis; 0.819998258 0.831186169 0.841864761 0.798329966 0.826870609 0.813581416 0.803520364 297150832 amyA Streptomyces pristinaespiralis ATCC 25486 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces pristinaespiralis; 0.839447273 0.838808076 0.816766657 108771244 amyA Mycobacterium sp. MCS Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 0.800326684 0.841574776 297162044 rgl Streptomyces bingchenggensis BCW-1 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces bingchenggensis; 0.795501526 0.831687927 198267558 GAPDH_Calvin Octadecabacter antarcticus 238 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter arcticus; 0.850400419 0.796381167 0.802643116 0.824638141 0.828643249 0.831680296 0.779958892 0.815360196 0.81725468 325064067 tktA Agrobacterium sp. H13-3 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium; 0.785469597 0.794188152 156865943 ara Clostridium leptum DSM 753 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium leptum; 0.81357197 0.799344279 383763661 amyA Caldilinea aerophila DSM 14535 = NBRC 104270 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Chloroflexi;class:Caldilineae;order:Caldilineales;family:Caldilineaceae;genus:Caldilinea;species:Caldilinea aerophila; 0.772634457 0.785904131 0.781766544 0.838353818 115383710 cutinase Aspergillus terreus NIH2624 Carbon Cycling Carbon degradation Cutin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 0.967175846 0.967072719 0.94355468 1.03159956 1.005661072 115517947 PRI Rhodopseudomonas palustris BisA53 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 0.821320667 0.861127736 0.853607627 0.797906376 302413415 cellobiase Verticillium albo-atrum VaMs.102 Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticilium;species:Verticillium albo-atrum; 0.891685792 0.831428861 0.787011251 0.919765301 0.815583242 0.786017308 393170856 linb Rhizobium leguminosarum bv. viciae WSM1455 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 0.778125927 0.822256201 302475323 vgb Streptomyces griseoflavus Tu4000 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseoflavus; 0.802235514 0.798798254 0.805565813 0.836872588 162281279 fccab Hoeflea phototrophica DFL-43 Sulfur Sulfide Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Hoeflea;species:Hoeflea phototrophica; 0.780393804 0.803076328 0.798427487 0.788501959 329961641 acetylglucosaminidase Bacteroides fluxus YIT 12057 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides fluxus; 0.792118611 0.84188318 0.803952898 0.844357718 253778112 amyA Chloroflexus aurantiacus Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus; 0.802041571 0.815672856 292816435 xyll Achromobacter piechaudii ATCC 43553 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter;species:Achromobacter piechaudii; 0.803414246 0.80028639 120405198 mhpb Mycobacterium vanbaalenii PYR-1 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 0.866236867 0.809191374 0.768747769 0.819290154 0.788068367 0.844464034 327542140 amyA Rhodopirellula baltica WH47 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Rhodopirellula;species:Rhodopirellula baltica; 0.789892388 0.992412472 0.937074912 1.036796437 0.902731317 0.904095682 1.014137232 0.88292737 1.069264342 219997419 arsc Thioalkalivibrio sp. HL-EbGR7 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio;species:Thioalkalivibrio sulfidophilus; 0.785174397 0.840039033 0.796251515 290571646 nitro Stackebrandtia nassauensis DSM 44728 Organic Remediation Others NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Glycomycetaceae;genus:Stackebrandtia;species:Stackebrandtia nassauensis; 0.874560831 0.799302351 0.876568026 0.91543384 0.832669399 0.879970284 0.829291226 0.871219628 0.832748279 0.860682407 0.862476644 157404688 rd Dehalococcoides sp. VS Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 0.784831914 0.828132868 0.832673429 0.817670402 328883435 chitinase Streptomyces venezuelae ATCC 10712 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces venezuelae; 0.844676749 0.860309354 0.846920564 0.827036064 0.844469215 0.805166537 0.843784838 0.871965792 0.833771791 0.822338727 0.809343493 0.792266982 0.829642987 0.840134752 325964580 RgaE Arthrobacter phenanthrenivorans Sphe3 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter phenanthrenivorans; 0.751600696 0.868380105 375141068 tfda Mycobacterium rhodesiae NBB3 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 0.784316623 0.822815937 288920911 mult_ring_12DiOx Frankia sp. EUN1f Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 0.957058432 0.880202789 0.870646577 0.923548351 0.951774114 0.89446858 0.949820096 0.896891538 0.966232536 0.890394097 0.92468248 0.86153644 0.890190577 0.892696708 0.913319291 0.886592241 0.939934424 388008057 nitro Pseudomonas synxantha BG33R Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas synxantha; 0.870194709 0.887718218 0.839881045 0.863563526 0.885595495 0.833631278 0.849693974 0.919508602 0.851311355 0.866693899 0.868978434 0.835515219 0.857983118 0.866993644 0.866518685 0.875748407 70983922 pme_Cdeg Aspergillus fumigatus Af293 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus fumigatus; 0.825056632 0.852835437 0.819122584 0.868905071 0.795439928 0.904338208 0.812749027 0.886135425 0.944194262 0.875279399 0.860750324 0.91290967 0.837185636 0.838912927 0.878914793 187477094 arsc Bordetella avium 197N Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella avium; 0.789754067 0.877919431 0.838112001 0.837363824 0.857199168 126248657 PEP_synthase Pyrobaculum calidifontis JCM 11548 Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum calidifontis; 0.812563008 0.785773306 315491079 gdh Mobiluncus curtisii ATCC 51333 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Mobiluncus;species:Mobiluncus curtisii; 0.816074835 0.832999934 0.811574402 0.806491432 336255501 cda Halopiger xanaduensis SH-6 Carbon Cycling Carbon degradation Starch superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halopiger;species:Halopiger xanaduensis; 0.882863351 0.811788564 0.8860152 0.844927349 0.868853303 0.853089739 0.837435192 0.775225363 0.849543663 117959704 phenol_oxidase Ganoderma fornicatum Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Ganodermataceae;genus:Ganoderma; 0.805739322 0.87279407 0.832208116 0.865088589 0.855194842 0.829030478 0.821909009 0.871596307 0.854095543 0.833100123 0.828373023 0.804798555 310778306 amyA Ilyobacter polytropus DSM 2926 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Fusobacteria;class:Fusobacteriia;order:Fusobacteriales;family:Fusobacteriaceae;genus:Ilyobacter;species:Ilyobacter polytropus; 0.82364707 0.949900104 227496239 amyA Actinomyces urogenitalis DSM 15434 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces urogenitalis; 0.824495098 0.830264991 0.850679629 0.812528388 0.815926959 0.819018466 0.776522716 0.858293465 46307950 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.802007865 0.813311206 0.863074998 0.812875239 0.808140977 0.853414685 0.827821492 383773640 FBPase Bradyrhizobium sp. S23321 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.754065024 0.761879889 422314017 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.847060977 0.806057517 0.753462344 0.835581597 150271801 ppx Bacteroides capillosus ATCC 29799 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;genus:Pseudoflavonifractor;species:Pseudoflavonifractor capillosus; 0.779833067 0.804766209 0.776349111 0.764509825 60326739 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.878275588 0.813642788 0.818475342 0.811250055 0.818536789 0.839200908 338804410 terc Nitrosomonas sp. Is79A3 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas; 0.800374382 0.839461479 0.85780949 0.881275645 0.842369081 0.771528429 0.877690464 119670370 arylest Azoarcus sp. BH72 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 0.817907608 0.924531579 0.821847355 404400467 sdsa Pseudomonas fuscovaginae UPB0736 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fuscovaginae; 0.835692114 0.815408121 345302357 ara Rhodothermus marinus SG0.5JP17-172 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Bacteroidetes;order:Bacteroidetes Order II. Incertae sedis;family:Rhodothermaceae;genus:Rhodothermus;species:Rhodothermus marinus; 0.857174332 0.810289663 0.894782682 0.87872387 0.83555399 0.842510682 0.781154812 0.821453019 0.869989579 0.822724348 167034310 catechol Pseudomonas putida GB-1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 0.79986944 0.818333451 0.821817627 0.808390285 359457841 amyA Acaryochloris sp. CCMEE 5410 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Acaryochloris; 0.80031407 0.794508296 380693478 amyA Bacteroides faecis MAJ27 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides faecis; 0.865050043 0.785789546 0.826406281 0.776849519 0.778862914 0.82363086 171912865 ppx Verrucomicrobium spinosum DSM 4136 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobiaceae;genus:Verrucomicrobium;species:Verrucomicrobium spinosum; 0.865041574 0.824319983 0.865805383 0.876435924 0.873953336 0.851895912 0.885456437 0.824961139 0.881079541 0.824099184 0.879574184 0.839561967 0.842541144 1.018062167 0.842051529 0.854421062 302506415 Sir Arthroderma benhamiae CBS 112371 Sulfur sulfite reduction NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Arthrodermataceae;genus:Arthroderma;species:Arthroderma benhamiae; 0.859773398 0.885761679 0.846505659 0.876946259 0.879346502 0.883962308 0.929957308 0.844637882 0.936064309 0.877430393 0.842739676 0.870618517 0.849829382 0.902671234 0.898201073 0.983781544 242130571 arsc Dickeya dadantii Ech703 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya dadantii; 0.799367972 0.786070674 0.798350138 0.789890553 209583006 actin_Stramenopiles Phaeodactylum tricornutum CCAP 1055/1 Other Phylogenetic NA superkingdom:Eukaryota;phylum:Bacillariophyta;class:Bacillariophyceae;order:Naviculales;family:Phaeodactylaceae;genus:Phaeodactylum;species:Phaeodactylum tricornutum; 0.875744279 0.804033833 0.801183004 0.818132416 0.862917061 0.804858813 0.843646769 0.782348079 0.825056486 119960751 arsc Arthrobacter aurescens TC1 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter aurescens; 0.853930702 0.791510796 303279064 actin_Viridiplantae Micromonas pusilla CCMP1545 Other Phylogenetic NA superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Mamiellophyceae;order:Mamiellales;genus:Micromonas;species:Micromonas pusilla; 0.819366827 0.788469802 12724358 arsc Lactococcus lactis subsp. lactis Il1403 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Lactococcus;species:Lactococcus lactis; 0.817826571 0.808283561 0.826287218 343761919 amie Gordonia alkanivorans NBRC 16433 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia alkanivorans; 0.802645912 0.822368456 0.896664711 0.82937803 298261301 chitinase Bacteroides sp. 1_1_14 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides; 0.790972252 0.798933845 108771787 chnb Mycobacterium sp. MCS Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 0.932960594 0.856487167 0.894237791 0.91601591 0.795453152 0.848916499 0.789920334 0.824771838 0.916696485 0.807198749 0.870021696 0.885692577 0.832032928 343798215 aps_apra Thiocapsa marina 5811 Sulfur adenylylsulfate reductase NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiocapsa;species:Thiocapsa marina; 0.817113211 0.913380316 0.861906038 0.821455381 0.857038339 344320127 arsc halophilic archaeon DL31 Metal Homeostasis Arsenic Detoxification superkingdom:Archaea; 0.810244201 0.768180655 302404491 pec_Cdeg Verticillium albo-atrum VaMs.102 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticilium;species:Verticillium albo-atrum; 0.806108391 0.787546368 0.873446892 0.779578838 0.823168037 0.792106471 0.811844328 0.77266333 0.781708166 323365554 nifh uncultured microorganism Nitrogen Nitrogen fixation NA 0.812857504 0.795151366 71908747 SoxC Dechloromonas aromatica RCB Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Dechloromonas;species:Dechloromonas aromatica; 1.131921327 1.127077085 1.099045159 1.130115843 1.110433454 1.091631019 1.085285069 1.083342914 1.043158429 302672831 glx Schizophyllum commune H4-8 Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 0.78739151 0.782254614 304552619 amyA Bifidobacterium dentium ATCC 27679 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium dentium; 0.786238216 0.784312666 260062880 amyA Robiginitalea biformata HTCC2501 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Robiginitalea;species:Robiginitalea biformata; 0.862075244 0.807802619 0.807023803 0.911192478 0.851663735 0.802099751 0.842310559 74058090 FBPase Thiobacillus denitrificans ATCC 25259 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus;species:Thiobacillus denitrificans; 0.808171146 0.818842671 0.795140834 0.821426175 0.794807996 0.820398348 0.849369114 0.860074665 0.839826387 148265428 tehb Geobacter uraniumreducens Rf4 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter uraniireducens; 0.962387357 0.841855124 0.862591183 0.874281083 0.811906831 0.842032443 0.830858434 73534131 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.848881888 0.863398978 33324771 Rubisco_Alveolata Prorocentrum minimum Carbon Cycling Carbon fixation Calvin cycle superkingdom:Eukaryota;class:Dinophyceae;order:Prorocentrales;family:Prorocentraceae;genus:Prorocentrum; 0.821754927 0.832108389 0.794874387 0.949731157 0.817589664 0.806900073 0.84041903 19072836 inulinase Paenibacillus polymyxa Carbon Cycling Carbon degradation Inulin superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 0.830541265 0.818970565 0.809776606 0.825413628 0.861040693 373553787 limeh Mycobacterium tusciae JS617 Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tusciae; 0.814187658 0.809270438 161661113 phytase Yersinia kristensenii Phosphorus Phytic acid hydrolysis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia; 0.794839386 0.869309329 0.818479542 0.754993998 0.796124936 0.845341659 0.83445492 146403598 amyA Acidiphilium cryptum JF-5 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acidiphilium;species:Acidiphilium cryptum; 0.848949725 0.846256899 0.814390172 0.828632461 0.9046759 0.855059624 0.842447257 0.892705565 0.87257632 0.897041439 242799769 vdh Talaromyces stipitatus ATCC 10500 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 0.803827927 0.845937415 0.82616748 0.779825198 405108851 nitro Desulfobacula toluolica Tol2 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfobacula;species:Desulfobacula toluolica; 0.888553634 0.851412942 0.809011399 0.814546262 0.862306611 0.831168607 0.844294517 0.820567689 0.835896949 0.829917193 0.866618335 154247873 aoxb Xanthobacter autotrophicus Py2 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 0.817574068 0.808156727 0.849656456 0.845381814 0.823116221 0.817663954 0.835034041 0.820329408 0.823346926 0.863583059 0.833050094 0.851167508 0.829173721 0.821415043 0.824513322 18413621 narg Halomonas halodenitrificans Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas; 0.830482306 0.814040095 0.790333755 0.862148322 0.829015501 0.795757542 0.937568172 0.843609221 0.855692812 229492512 urec Rhodococcus erythropolis SK121 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 0.879392302 0.833786001 0.840119246 0.999567022 0.885368681 292604618 linb Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas fuscans; 0.838502158 0.806597625 407427308 xylg Nitratireductor indicus C115 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Nitratireductor;species:Nitratireductor indicus; 0.804921187 0.812714086 0.800080941 0.86703075 0.78933654 0.790767867 0.824577047 0.819383997 0.784981977 0.804156417 0.795779726 78518710 xamo Bradyrhizobium sp. BTAi1 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.810152008 0.823842061 0.799381001 0.800281452 0.822118949 0.81062711 0.796808058 388528372 urec Tistrella mobilis KA081020-065 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Tistrella;species:Tistrella mobilis; 0.804460779 0.827322941 0.879907304 0.801461679 0.795471213 0.85184335 0.908653724 0.908403724 0.849775947 0.818436042 0.851092766 0.800546567 0.88555699 0.826785906 335350199 amyA Lactobacillus ruminis SPM0211 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus ruminis; 0.957145407 1.108343668 1.052215743 1.084627195 1.021678652 1.027271988 1.037048977 1.000596464 1.123785555 1.033373045 1.040352939 1.026102556 365183495 FBP_aldolase Sinorhizobium fredii HH103 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium fredii; 0.836802424 0.821680809 0.881617493 0.924939247 109457402 nirb Roseobacter denitrificans OCh 114 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter denitrificans; 0.791393903 0.814179646 0.817364133 0.830683143 0.786402204 259417017 urec Silicibacter sp. TrichCH4B Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 0.784570283 0.802144366 0.81960015 0.815422706 0.778897265 126460064 dsra Pyrobaculum calidifontis JCM 11548 Sulfur sulfite reduction NA superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum calidifontis; 1.048651178 0.986732204 1.046845987 0.99511201 1.008444824 0.9805568 0.999322627 0.987585946 0.962590922 0.991326881 1.005218317 0.962741217 0.948570765 0.989825206 0.997221323 1.00206224 1.002615701 189198862 cutinase Pyrenophora tritici-repentis Pt-1C-BFP Carbon Cycling Carbon degradation Cutin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 0.906358771 0.866195361 0.74964793 0.811602182 68231993 mdlc Frankia sp. EAN1pec Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 0.861003967 0.819417794 0.822774638 0.820184522 0.828870103 0.77875204 0.835202896 209503695 cara Burkholderia sp. H160 Organic Remediation Aromatics Heterocyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 0.841180539 0.775015593 0.806047014 0.824461616 0.833333311 0.830571231 320107745 RgaE Terriglobus saanensis SP1PR4 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Terriglobus;species:Terriglobus saanensis; 0.804584036 0.806626379 0.812717226 0.8048091 0.800460055 334120678 amyA Microcoleus vaginatus FGP-2 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Microcoleus;species:Microcoleus vaginatus; 0.801480127 0.891257946 0.847181885 0.833419495 0.814685674 0.787132399 0.858515543 0.847611931 0.81159391 199597095 terc Lactobacillus rhamnosus HN001 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus rhamnosus; 0.835716702 0.832205987 0.854635113 0.86140912 0.87343354 0.896022796 0.800538314 0.883814929 0.938936487 0.879142634 0.870085676 0.814967353 0.827413501 335999439 codh Treponema primitia ZAS-1 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema primitia; 0.838575805 0.78796811 0.833987416 0.778177186 120598433 arylest Shewanella sp. W3-18-1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella; 0.798938791 0.792869013 0.809747852 0.857316127 0.80577265 377524102 amyA Gordonia otitidis NBRC 100426 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia otitidis; 0.818839784 0.753183675 156869021 ara Clostridium leptum DSM 753 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium leptum; 0.791580251 0.863300313 0.83115332 0.790591496 62003503 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.800486601 0.794685191 0.762470104 0.818144062 33320481 dsrB sulfate-reducing bacterium oXyS1 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 0.786230284 0.807238327 349787949 mannanase Thermobacillus composti KWC4 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Thermobacillus;species:Thermobacillus composti; 0.812962608 0.82434086 9837268 endochitinase Coniothyrium minitans Carbon Cycling Carbon degradation Chitin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;genus:Coniothyrium; 0.926811975 0.850492428 0.933920439 0.917730912 0.870226036 0.886343316 0.859688966 0.897842092 0.856783159 0.899252636 0.885555781 0.875448519 0.942066558 0.857550382 0.908074416 223019594 catb Rhodococcus erythropolis Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 0.766401709 0.843702131 355336811 alkb uncultured bacterium Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria; 0.905785917 0.810503943 0.819492865 0.876311432 0.856428237 0.810764795 0.818427066 0.873118679 0.859563085 0.864591601 0.886385263 260635533 gdh Prevotella sp. oral taxon 472 str. F0295 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella sp. oral taxon 472; 0.860788625 0.846619645 0.9616503 0.943135084 0.851677761 0.888480498 238937072 endochitinase Lachancea thermotolerans Carbon Cycling Carbon degradation Chitin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Saccharomycetaceae;genus:Lachancea; 0.78438691 0.788201054 56967347 mcra uncultured archaeon Carbon Cycling Methane Methanogenesis superkingdom:Archaea; 0.803339197 0.846102119 0.830180462 0.841384422 253826077 endochitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 0.765219718 0.847023701 0.825379917 0.872943833 0.824513573 0.808343618 0.807463602 0.834923688 170945455 nagg Podospora anserina Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Lasiosphaeriaceae;genus:Podospora; 0.80084941 0.886396305 0.84136953 0.835130895 0.851672283 0.873124393 0.852276713 0.831361855 0.816214945 0.890813814 0.837230575 0.831332594 0.868890099 0.869156881 293614287 xyla Coraliomargarita akajimensis DSM 45221 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;order:Puniceicoccales;family:Puniceicoccaceae;genus:Coraliomargarita;species:Coraliomargarita akajimensis; 0.831037487 0.827305828 0.798780839 0.822937368 0.876708993 255938524 rgh Penicillium chrysogenum Wisconsin 54-1255 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 1.025536426 0.933080296 0.932068322 1.06820107 1.03961977 1.039931258 1.084987448 1.027730797 1.027623807 0.940101691 1.012977227 365417946 B_lactamase_A Bradyrhizobium sp. STM 3843 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.798410596 0.838786448 0.820838275 0.856130955 0.86554815 0.848478253 0.890689452 147851373 PRI Synechococcus sp. RCC307 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 0.7960087 0.805066387 0.770629291 0.82032996 326950750 chnb Pseudonocardia dioxanivorans CB1190 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Pseudonocardia;species:Pseudonocardia dioxanivorans; 0.763082215 0.825944258 0.769936647 0.816646516 359826106 nifh Clostridium clariflavum DSM 19732 Nitrogen Nitrogen fixation NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium clariflavum; 0.869731676 0.8321092 0.846954661 0.788353968 0.833321672 0.81896905 0.863528887 0.82415778 0.833169203 0.827261399 397698210 badh Pseudomonas putida DOT-T1E Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 0.860163777 0.794885794 0.776466654 0.846869153 254262254 amyA Enterobacter helveticus Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Cronobacter; 0.806997361 0.799851087 0.854811206 0.805058032 0.850770106 0.820227435 0.790503793 0.765019808 0.81522546 221534497 cysI Rhodobacteraceae bacterium KLH11 Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 0.751699756 0.799331467 0.797397261 0.782040308 242784327 endochitinase Talaromyces stipitatus ATCC 10500 Carbon Cycling Carbon degradation Chitin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 0.90442577 0.856996045 306835477 nira Corynebacterium accolens ATCC 49726 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium accolens; 0.829353642 0.878316297 0.826785642 0.963745606 0.790150993 0.851003362 256586441 terc Saccharomonospora viridis DSM 43017 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora viridis; 0.825364746 0.764194689 373525868 MMCE_3HP4HB Metallosphaera yellowstonensis MK1 Carbon Cycling Carbon fixation 3-hydroxypropionate/4-hydroxybutyrate cycle superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Sulfolobales;family:Sulfolobaceae;genus:Metallosphaera;species:Metallosphaera yellowstonensis; 0.852580937 0.852513568 0.81150322 0.845706908 90200171 limeh Mycobacterium vanbaalenii PYR-1 Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 0.821387038 0.832850045 0.781197637 0.830406194 0.795034135 0.812155776 0.823851139 0.823686652 0.782795694 0.874803149 390434937 amyA Pantoea agglomerans IG1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea;species:Pantoea agglomerans; 0.772786433 0.920441095 0.808049569 0.808339552 337760917 vdh Hyphomicrobium sp. MC1 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium; 0.838641406 0.775524575 0.836360991 0.819255091 0.823544429 0.862458484 218716833 amyA Talaromyces stipitatus ATCC 10500 Carbon Cycling Carbon degradation Starch superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 1.043526876 0.91491464 1.015108825 1.031844094 1.009528317 1.010034068 1.011386264 1.005765381 0.953217796 0.93331238 292560775 aoxb uncultured bacterium Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 0.850858673 0.827228074 0.824889453 0.840003014 0.861035171 0.848863858 0.818063888 0.812021524 0.806414748 0.834377292 247538722 fosa Dickeya zeae Ech1591 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya zeae; 0.881301971 0.899741048 0.840444264 0.840788238 0.816180534 0.792993106 0.835565272 0.896941662 0.819231481 0.85580615 83972352 nosz uncultured alpha proteobacterium Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 0.803416579 0.803654615 241205289 limeh Rhizobium leguminosarum bv. trifolii WSM1325 Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 0.785585192 0.817025198 0.763371504 0.894798632 150014758 rubisco uncultured gamma proteobacterium Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 1.133688854 1.138081119 1.22626991 1.145750435 1.134165435 1.13415355 77974242 arylest Yersinia frederiksenii ATCC 33641 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia frederiksenii; 0.825478664 0.84105918 0.851063385 0.86266873 0.849284698 0.852769994 0.831403376 0.91088361 0.882217635 0.88675958 0.932122544 0.871519394 0.956623975 0.841590752 0.867345149 0.892863587 56798377 catechol_b uncultured bacterium Organic Remediation Aromatics Other aromatics superkingdom:Bacteria; 0.820024535 0.813742945 0.812335556 0.836475846 227358250 urec Proteus mirabilis ATCC 29906 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Proteus;species:Proteus mirabilis; 0.83750571 0.783229626 0.786289458 0.84348279 254443767 amyA Verrucomicrobiae bacterium DG1235 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales; 0.834472425 0.835620614 0.843266008 0.873650151 0.83547087 0.846559767 0.850662196 0.851256278 0.817191711 0.835162302 164598084 exoglucanase Clitopilus prunulus Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Entolomataceae;genus:Clitopilus; 0.803641094 0.864279402 0.975194841 0.919546233 1.166301445 0.810865217 0.958600354 0.933448098 0.828744251 0.810040697 0.815290258 222447906 cysI Chloroflexus sp. Y-400-fl Sulfur Other NA superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus; 0.80704683 0.785997268 251846150 cda Paenibacillus sp. oral taxon 786 str. D14 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus sp. oral taxon 786; 0.814745577 0.809031357 0.794295313 0.773829808 0.872501383 1.02225601 0.822321357 0.767114218 0.928134122 315416094 arsc Asticcacaulis excentricus CB 48 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis excentricus; 0.808413346 0.775696523 225387560 cellobiase Clostridium asparagiforme DSM 15981 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium asparagiforme; 0.797819822 0.871932371 0.863797448 0.796201151 226304854 cdh Rhodococcus erythropolis PR4 Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 0.802532438 1.052404123 0.828379037 0.779318087 305383848 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.824595393 0.902302493 0.889238034 0.856284799 0.82792519 0.87262921 0.801361504 0.875329322 0.861494824 0.821939068 0.844533955 0.849365083 0.844079445 0.865824377 0.848634721 86372249 mannanase Pectobacterium carotovorum Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium; 0.834286872 0.782648152 0.87220369 0.832955495 0.822562544 0.830293393 0.820935184 0.769063711 0.801529433 0.766435223 0.84801554 0.835157809 99030607 ppk uncultured bacterium Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria; 1.008564311 1.010402209 1.072008022 1.045019808 1.021975492 1.009205523 1.039901165 1.004359027 0.96900071 1.006353296 1.028793794 0.956356087 0.949139454 0.953828745 0.942952017 1.023524575 1.019502487 290467931 phytase uncultured microorganism Phosphorus Phytic acid hydrolysis NA 0.836053399 0.811524951 384439702 catechol_b Thermus sp. CCB_US3_UF1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus; 0.834279826 0.878722699 0.862711585 0.839383536 0.785666296 0.816740412 0.8636617 315019228 b_lactamase Pseudomonas aeruginosa Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.796747421 0.809180397 0.81044127 0.837689043 324987965 amyA Prevotella multiformis DSM 16608 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella multiformis; 0.82390584 0.847254111 0.884516031 0.905801042 0.958895687 0.885157473 76577576 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.766521694 0.825992563 83317000 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.77152289 0.802315911 0.813821197 0.797632314 283437565 cysI Pirellula staleyi DSM 6068 Sulfur Other NA superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Pirellula;species:Pirellula staleyi; 0.813031863 0.784177906 0.79545406 0.843153019 163782701 AcnA Hydrogenivirga sp. 128-5-R1-1 Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Aquificaceae;genus:Hydrogenivirga; 0.802075926 0.781714728 229791268 amyA Shuttleworthia satelles DSM 14600 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Shuttleworthia;species:Shuttleworthia satelles; 0.832032998 0.822309747 0.818258013 0.772490836 0.782932996 324316161 fthfs Deinococcus proteolyticus MRP Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus proteolyticus; 0.743395981 0.865833471 77965235 proO Burkholderia sp. 383 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 0.818890212 1.24129602 0.801398527 0.863625658 297592241 dsra uncultured bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.814704333 0.87153825 0.842770508 0.846866084 0.834933483 0.907438815 0.833549816 0.821778206 0.817246631 0.893161533 0.78674562 0.861510968 343799407 amyA Thiocapsa marina 5811 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiocapsa;species:Thiocapsa marina; 0.852928785 0.763635858 0.790511675 0.833504307 0.849869282 0.770671929 0.802027099 0.81609987 90954605 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.800306729 0.803153281 0.758382874 0.818285214 365858821 tktA Acetobacteraceae bacterium AT-5844 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae; 0.770312941 0.830075402 384082734 TIM gamma proteobacterium HIMB30 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 0.846184485 0.814634025 0.832121979 0.855897194 0.861973697 0.799957257 0.813602744 0.811741559 0.839430138 339489295 alginase Pseudomonas putida S16 Carbon Cycling Carbon degradation Alginate superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 0.898133563 0.834437865 0.873298362 0.832851754 0.783323019 0.918413654 0.907593601 0.825534338 0.890962811 0.833118535 0.833377657 0.811638478 0.836905567 0.828901332 0.901226066 112464191 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.820527032 0.850040918 0.926508279 0.905591907 0.776807939 0.855469494 0.819358404 0.816489823 0.788418707 0.861342134 288961232 vana Azospirillum sp. B510 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum lipoferum; 0.788870225 0.810916341 0.751917124 0.821525962 0.804535757 0.820107988 358459286 tfda Frankia sp. CN3 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 0.798850256 1.431660679 384068316 amyA Fibrella aestuarina BUZ 2 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Fibrella;species:Fibrella aestuarina; 0.768681688 0.799471632 27350838 PRK Bradyrhizobium japonicum USDA 110 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium diazoefficiens; 0.809311763 0.817624682 0.836902588 0.835339254 0.845753412 0.818089474 0.868008484 0.767135736 0.826370277 12744483 Rubisco_Alveolata Amphidinium carterae Carbon Cycling Carbon fixation Calvin cycle superkingdom:Eukaryota;class:Dinophyceae;order:Gymnodiniales;family:Gymnodiniaceae;genus:Amphidinium; 0.811218779 0.820005662 320137895 amyA Selenomonas artemidis F0399 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas artemidis; 0.792211126 0.774387995 0.792293963 0.826357412 120401664 nhh Mycobacterium vanbaalenii PYR-1 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 0.805963583 0.802740079 0.788475517 0.795729025 0.815446657 0.783975164 0.814012207 0.781902459 50844411 phenol_oxidase Chaetomium thermophilum var. thermophilum Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium thermophilum; 0.781552504 0.850792174 0.883621234 0.811641447 110634762 amyA Chelativorans sp. BNC1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 0.823454357 0.811199281 0.798889973 0.817878786 0.827768384 0.848512551 78185927 dsra Pelodictyon luteolum DSM 273 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Pelodictyon;species:Pelodictyon luteolum; 0.782906495 0.800923276 0.770283979 0.83543621 23325733 amyA Bifidobacterium longum NCC2705 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium longum; 0.865432816 0.804510128 0.829974503 0.81838978 0.824096491 0.798622055 0.829043218 0.836061491 0.827944898 0.827729843 0.827766932 0.860257782 238719418 cellobiase Yersinia mollaretii ATCC 43969 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia mollaretii; 0.811125322 0.793278603 0.840466336 0.785070939 0.803488023 0.80009623 0.813010793 0.796246583 0.772872888 0.813164683 219784536 bphd Nocardioides sp. JS614 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 0.778134821 0.825085977 0.804149684 0.77516642 0.762480651 0.824600948 150850240 tannase_Cdeg Botryotinia fuckeliana B05.10 Carbon Cycling Carbon degradation Tannins superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Botryotinia;species:Botryotinia fuckeliana; 0.779609178 0.836655458 0.83950207 0.796411267 121711156 oxdb Aspergillus clavatus NRRL 1 Organic Remediation Aromatics Nitoaromatics superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 0.805107311 0.837100758 0.799815549 0.799241437 0.848842112 0.784334197 163811725 rd Dehalococcoides sp. VS Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 0.799146527 0.827856326 0.9139019 0.900976637 0.856238658 0.87114529 0.896137427 0.835269669 0.86199336 0.850862598 0.820481402 0.875143577 0.900822035 0.777459004 0.823832383 227488002 amyA Corynebacterium glucuronolyticum ATCC 51867 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium glucuronolyticum; 0.824006821 0.783023495 333808261 urec Methylomonas methanica MC09 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylomonas;species:Methylomonas methanica; 0.820474443 0.858765088 0.894885695 0.84250227 0.813530197 0.841209961 0.863350847 0.862720342 0.824698938 0.832675228 71914756 exoglucanase Thermobifida fusca YX Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Thermobifida;species:Thermobifida fusca; 0.804997654 0.823933714 0.855074238 0.866929216 0.820885724 0.845871044 0.870727004 0.86217161 0.801627139 0.84206109 0.830104933 0.837339402 0.852919393 206602145 sucD Leptospirillum sp. Group II '5-way CG' Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle superkingdom:Bacteria;phylum:Nitrospirae;class:Nitrospira;order:Nitrospirales;family:Nitrospiraceae;genus:Leptospirillum; 0.773664495 0.808937174 0.777694551 0.829662266 0.793931608 0.783286078 0.844660777 0.807163538 303278072 mannanase Micromonas pusilla CCMP1545 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Mamiellophyceae;order:Mamiellales;genus:Micromonas;species:Micromonas pusilla; 0.919178451 0.845985382 0.869496952 0.855442259 1.03449786 0.908169715 1.058402595 0.91848105 0.970788069 353189486 pcpb Mycobacterium rhodesiae JS60 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 0.766686107 0.917411978 344224774 AcnA endosymbiont of Riftia pachyptila (vent Ph05) Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;species:endosymbiont of Riftia pachyptila; 0.791383987 0.827350498 221534910 dmdA Rhodobacteraceae bacterium KLH11 Sulfur DMSP degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 0.806451787 0.792489037 293602938 nitro Achromobacter piechaudii ATCC 43553 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter;species:Achromobacter piechaudii; 0.917377094 0.852042086 0.854867645 0.847463438 0.884947143 0.835410443 0.821275187 0.86476387 0.845572316 0.880635268 0.826246076 0.842232934 0.86066621 0.896971922 325282324 gdh Deinococcus proteolyticus MRP Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus proteolyticus; 0.833966256 0.791074109 0.857631339 0.803059676 0.899073882 0.815044466 0.775379602 0.799754055 0.82355039 63146072 phenol_oxidase Hortaea acidophila Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Dothideales;genus:Hortaea; 0.810674076 0.852539431 0.798304969 0.828556329 198256785 b_lactamase Verrucomicrobiae bacterium DG1235 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales; 0.788374512 0.864098882 0.800886829 0.767121166 0.802462881 54018030 narg Nocardia farcinica IFM 10152 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 0.849412287 0.815772766 0.832053687 0.828264636 0.856701167 0.841853939 0.800390335 0.831629336 0.831185338 0.802038144 0.816376113 0.821263806 0.838974859 0.850628776 0.873689854 228760199 amyA Bacillus mycoides Rock3-17 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus mycoides; 0.9396776 0.954590758 302193076 ppx Brevundimonas subvibrioides ATCC 15264 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Brevundimonas;species:Brevundimonas subvibrioides; 0.985774251 0.994565532 67525865 pme_Cdeg Aspergillus nidulans FGSC A4 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 0.917641622 1.017258409 1.055771007 1.058789785 1.043541967 1.0515033 1.032428947 1.027881948 0.966138819 1.013774319 160917674 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.782665065 0.886574876 0.815272648 0.893686621 0.95059955 0.86751631 8843721 bphd Burkholderia sp. TSN101 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 0.812192642 0.8754273 218675453 ppx Rhizobium etli GR56 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 0.818416638 0.807389433 0.771366181 0.825207797 23821232 mer Pseudomonas putida Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.754828064 0.796836164 237801053 cmci Pseudomonas syringae pv. oryzae str. 1_6 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas coronafaciens; 0.854196632 0.787648998 313158567 gdh Alistipes sp. HGB5 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Rikenellaceae;genus:Alistipes; 0.912969873 0.834431028 0.908595343 0.906991468 0.884493424 0.843068274 0.852447258 0.785325824 0.865632988 0.812048082 0.837068085 0.845962358 0.847455006 0.864126802 0.859181159 0.871807421 298236953 amyA Mobiluncus curtisii ATCC 43063 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Mobiluncus;species:Mobiluncus curtisii; 0.783285111 0.846360616 294340863 TIM Thiomonas sp. 3As Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Thiomonas; 0.795614869 0.825112737 0.801793942 0.769606569 342316526 aoxb uncultured bacterium Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 0.820452189 0.855933166 0.827546223 0.861522599 334889950 alkb Salinisphaera shabanensis E1L3A Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Salinisphaerales;family:Salinisphaeraceae;genus:Salinisphaera;species:Salinisphaera shabanensis; 0.89121601 0.8423027 0.817986767 0.870289928 0.803688867 0.819270585 0.80505154 294055149 amyA Coraliomargarita akajimensis DSM 45221 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;order:Puniceicoccales;family:Puniceicoccaceae;genus:Coraliomargarita;species:Coraliomargarita akajimensis; 0.772574644 0.825710218 0.772385497 0.776207524 333441102 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.804152222 0.792274012 0.839698704 0.835476797 225159869 amyA Clostridium hylemonae DSM 15053 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hylemonae; 0.847284594 0.813409553 0.787603441 0.834419152 171991174 amyA Exiguobacterium sibiricum 255-15 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium;species:Exiguobacterium sibiricum; 0.801354362 0.829885676 195537608 dsra uncultured bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.792021273 0.851649085 398189687 pcag Pseudomonas sp. GM55 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.778263418 0.807326532 0.867012595 0.814501916 0.798837654 0.830421411 356659149 xylg Rhodococcus opacus PD630 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus opacus; 0.804507068 0.791950667 0.760937706 0.809916257 229381914 cellobiase Coprobacillus sp. D7 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Firmicutes;class:Erysipelotrichia;order:Erysipelotrichales;family:Erysipelotrichaceae;genus:Coprobacillus; 0.784444376 0.785279293 116222446 exochitinase Solibacter usitatus Ellin6076 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 0.86591977 0.949357527 0.891181708 0.892960666 0.889862504 0.885649368 0.910382612 0.882164261 0.891273763 0.882330759 0.911520908 0.912625714 0.933112124 0.910475613 0.888309041 0.906712745 40253093 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.823486807 0.939513791 0.882540205 0.855536706 0.832441134 0.765240287 0.895824772 115399138 glucoamylase Aspergillus terreus NIH2624 Carbon Cycling Carbon degradation Starch superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 0.814922792 0.846592358 0.798934044 0.850957729 0.862298469 0.781492188 0.825340458 0.798384457 0.834568165 87285063 CsoS1_CcmK Blastopirellula marina DSM 3645 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Blastopirellula;species:Blastopirellula marina; 0.765627126 0.809762521 0.834273671 0.823678556 0.784124505 0.801723003 0.794387099 0.777757166 0.81468895 41397940 ppk Mycobacterium avium subsp. paratuberculosis K-10 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 0.822281486 0.841579479 76664073 gdh Nyctotherus ovalis Nitrogen Ammonification NA superkingdom:Eukaryota;class:Armophorea;order:Armophorida;family:Metopidae;genus:Nyctotherus; 0.793363727 0.851783667 0.828190561 0.786973738 0.815554134 0.863497289 291074967 ppx Clostridium sp. M62/1 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium; 0.8022722 0.813272183 0.814552573 0.796014686 0.778577121 0.838781972 226098180 fthfs Brevibacillus brevis NBRC 100599 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Brevibacillus;species:Brevibacillus brevis; 0.765666568 0.847702825 0.83380833 0.821918306 0.83150868 0.770602793 0.807003584 354583351 amyA Paenibacillus lactis 154 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus lactis; 0.819192242 0.800557841 1.016123509 0.801874488 0.812611515 0.840649364 0.826712786 0.807206735 0.852702545 300390442 fthfs uncultured bacterium Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria; 0.845246207 0.848255402 0.790478859 0.841960039 19552303 hbh Corynebacterium glutamicum ATCC 13032 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium glutamicum; 0.797624085 0.818593067 120324164 mer Marinobacter aquaeolei VT8 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter hydrocarbonoclasticus; 0.820945665 0.834193903 0.777290893 0.852659477 0.814379916 0.766704817 359395507 alkk Halomonas boliviensis LC1 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas;species:Halomonas boliviensis; 0.79525658 0.821225809 0.861207053 0.780101239 0.806892872 0.810301733 156061277 lactase_fungi Sclerotinia sclerotiorum 1980 Carbon Cycling Carbon degradation Lactose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Sclerotinia;species:Sclerotinia sclerotiorum; 0.858235683 0.810779182 0.792222026 0.835620322 0.801196156 0.813483972 347527890 ppk Sphingobium sp. SYK-6 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium; 0.814594307 0.833375909 298717696 bphd Comamonas testosteroni S44 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 0.817412631 0.846886114 223470326 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.85271819 0.864399275 0.846350171 0.83154991 0.791343536 0.79256029 0.834146667 87285058 ccmL Blastopirellula marina DSM 3645 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Blastopirellula;species:Blastopirellula marina; 0.780799158 0.821048101 299749935 chitin_deacetylase_fungi Coprinopsis cinerea okayama7#130 Carbon Cycling Carbon degradation Chitin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 0.841607022 0.809992597 0.840437433 0.853706346 0.814072494 0.836502204 88779691 pgk Reinekea sp. MED297 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Reinekea;species:Reinekea blandensis; 0.844131721 0.775820328 0.840078051 0.823111113 302513434 ppk Veillonella atypica ACS-049-V-Sch6 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Veillonella;species:Veillonella atypica; 0.793810191 0.785931361 0.84463005 0.797825213 0.876511024 0.820098866 374847830 linb Nocardia cyriacigeorgica GUH-2 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia cyriacigeorgica; 0.812854441 0.860575474 229363002 phytase Pseudomonas fluorescens SBW25 Phosphorus Phytic acid hydrolysis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 0.788774635 0.801315421 0.803598349 0.821422524 0.924182875 0.793280154 316953278 nitrilase Pantoea sp. At-9b Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 0.878605321 0.853250791 0.806142517 0.783198315 339475008 ara Mycosphaerella graminicola IPO323 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Capnodiales;family:Mycosphaerellaceae;genus:Zymoseptoria;species:Zymoseptoria tritici; 0.827862491 0.869001442 0.844932784 0.813708619 0.843079195 0.843529569 0.8073042 150842 gdh Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Porphyromonas; 0.759089823 0.788166672 119673172 4hbcd_dic4hb Pyrobaculum islandicum DSM 4184 Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum islandicum; 0.748047803 0.791570299 257447322 FBPase Enhydrobacter aerosaccus SK60 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Enhydrobacter;species:Enhydrobacter aerosaccus; 0.822026247 0.77995534 187603700 mer Exiguobacterium sp. AT1b Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium; 0.840511683 0.830258849 0.812551049 0.81098845 0.795232435 0.80613322 0.763620758 0.81150442 347539284 nirb Pseudogulbenkiania sp. NH8B Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Pseudogulbenkiania; 0.845639187 0.894369859 0.803906804 311907590 RgaE Leadbetterella byssophila DSM 17132 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Leadbetterella;species:Leadbetterella byssophila; 0.795343862 0.821671725 0.745376027 0.850745457 37925021 nifh uncultured nitrogen-fixing bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.890114103 0.828722096 0.843188447 0.774906421 0.792554741 0.823936085 187975930 alpha_galactosidase_fungi Pyrenophora tritici-repentis Pt-1C-BFP Carbon Cycling Carbon degradation Other superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 0.799438996 0.835690479 0.807206797 0.814828635 222152451 ppk Streptococcus uberis 0140J Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus uberis; 0.824412065 0.838643162 0.788358737 0.803386231 212544516 tfda Penicillium marneffei ATCC 18224 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces marneffei; 0.820211553 0.795118923 156523572 one_ring_12diox uncultured bacterium Organic Remediation Aromatics Other aromatics superkingdom:Bacteria; 0.870797132 0.989295732 0.964705094 0.958458655 0.945169582 0.966342969 0.977444943 0.965877007 0.938513091 0.921548574 0.905773889 0.848129338 0.881104594 0.870470707 0.901269813 0.908880979 219795624 pec_Cdeg Colletotrichum gloeosporioides Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Glomerellaceae;genus:Glomerella;species:Glomerella cingulata; 0.803910982 0.834670052 0.843626963 0.78763857 0.82635564 0.883803474 240169491 amyA Mycobacterium kansasii ATCC 12478 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium kansasii; 0.760532066 0.785839381 398657994 alkk Phaeobacter gallaeciensis DSM 17395 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 0.784669534 0.794073486 0.840078226 0.781635139 0.82016168 0.808726652 352096395 amyA Synechococcus sp. WH 8016 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 0.811351974 0.860663865 0.79757618 55978121 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.822897314 0.811202728 0.761583534 0.852281716 322412966 ppx Phascolarctobacterium succinatutens YIT 12067 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Acidaminococcaceae;genus:Phascolarctobacterium;species:Phascolarctobacterium succinatutens; 0.786226429 0.823054132 109452504 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.814117713 0.817731577 0.787863059 0.866120182 239996490 pula Alteromonas macleodii ATCC 27126 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alteromonas;species:Alteromonas macleodii; 0.789418004 0.791251352 0.848915986 0.829358321 90438395 chitinase Vibrio angustum S14 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium angustum; 0.770871373 0.792376143 0.819312086 0.834680608 0.801213254 0.832716568 0.801341118 0.835719502 116804592 nasa uncultured prokaryote Nitrogen Assimilatory N reduction NA 0.837419397 0.82168554 0.888630899 0.886036842 0.794320355 0.862793855 0.863992273 0.804420684 0.916192837 387850034 amyA Cronobacter sakazakii ES15 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Cronobacter;species:Cronobacter sakazakii; 0.794380461 0.776750559 0.831960013 0.797394342 83592941 amyA Rhodospirillum rubrum ATCC 11170 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum rubrum; 0.840885048 0.862958419 0.818693728 0.866460091 0.855454887 0.831404946 27383060 phn Bradyrhizobium japonicum USDA 110 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 0.819502236 0.820793487 0.806445629 0.845100448 0.830989085 0.837007022 0.807500283 0.851674556 33385603 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.859156624 0.820885969 85859696 atza Syntrophus aciditrophicus SB Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophaceae;genus:Syntrophus;species:Syntrophus aciditrophicus; 0.81807803 0.811626654 0.810759701 238597302 phenol_oxidase Moniliophthora perniciosa FA553 Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Marasmiaceae;genus:Moniliophthora;species:Moniliophthora perniciosa; 0.805919896 0.821362672 388530833 tfda Tistrella mobilis KA081020-065 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Tistrella;species:Tistrella mobilis; 0.868352845 0.821833134 0.880134952 0.838435505 0.829606784 0.866223299 0.789818549 0.810537285 0.773513246 0.855490151 164455908 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 0.769491909 0.78933233 359770743 bphd Gordonia effusa NBRC 100432 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia effusa; 0.878045731 0.802881857 158450395 endoglucanase Coprococcus eutactus ATCC 27759 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Coprococcus;species:Coprococcus eutactus; 0.791960185 0.809370792 134266926 xyla Geobacillus thermodenitrificans NG80-2 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus;species:Geobacillus thermodenitrificans; 0.822425479 0.774370156 161330814 nrfa Shewanella benthica KT99 Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella benthica; 0.800191389 0.813904233 218274293 ara Roseburia intestinalis L1-82 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Roseburia;species:Roseburia intestinalis; 0.904075408 0.858526826 0.866016534 0.794251605 407787250 atzb Celeribacter baekdonensis B30 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Celeribacter;species:Celeribacter baekdonensis; 0.843825324 0.831247385 0.832891308 0.835948946 0.819882726 0.826848616 0.838228384 0.802747012 0.812100396 0.802839341 404446791 alkb Mycobacterium vaccae ATCC 25954 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vaccae; 0.885332565 0.859956126 0.779458502 0.826064682 0.81520172 0.829867258 0.767142963 0.811299618 0.806031219 0.847643977 0.808639744 0.805383967 0.80910106 0.857462767 116068566 chitinase Synechococcus sp. RS9916 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 0.757856987 0.78480438 0.805296938 0.803718711 218288588 dehh109 Alicyclobacillus acidocaldarius LAA1 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Alicyclobacillus;species:Alicyclobacillus acidocaldarius; 0.793236639 0.783809246 0.780207926 0.768677622 0.796695128 0.847563507 73534241 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.805288042 0.832851392 0.838003499 0.811106638 0.824632243 0.844891762 0.802543789 0.822268857 0.807113199 0.790097491 0.81557125 0.851531169 0.834622356 0.855990156 0.817760295 325914835 xylanase Xanthomonas vesicatoria ATCC 35937 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas vesicatoria; 0.783214225 0.832125973 361058153 rgl Niastella koreensis GR20-10 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;genus:Niastella;species:Niastella koreensis; 0.828355136 0.860245108 0.839247589 0.843356692 0.833172276 0.863567404 0.859113784 0.833683241 0.823528573 0.837565576 0.861632267 0.847016203 0.780298633 0.848909471 168699430 arsm Gemmata obscuriglobus UQM 2246 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Gemmata;species:Gemmata obscuriglobus; 0.833525515 0.78646911 0.813364715 0.823649871 0.815204091 0.790812441 0.863224131 0.826511781 0.866620496 0.789255469 0.826911705 352100605 cmci Halomonas sp. HAL1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas; 0.832569656 0.8182168 0.818447073 0.842353931 345852779 bphd Streptomyces zinciresistens K42 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces zinciresistens; 0.7921685 0.821096479 0.76275233 0.810593268 340346554 ara Prevotella dentalis DSM 3688 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella dentalis; 0.815705188 0.882125989 0.825172969 0.812887952 0.824227512 0.825014129 354956177 SoxC Bradyrhizobium japonicum USDA 6 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 0.9245785 0.898072647 0.922589474 0.853227513 0.968700347 0.840314064 0.817673708 0.879832596 0.974100751 0.884674664 0.918184136 0.914366892 0.958853465 0.919657789 0.909809485 0.940056529 162285371 mer Hoeflea phototrophica DFL-43 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Hoeflea;species:Hoeflea phototrophica; 0.809291015 0.817980717 0.828425523 0.789532511 296168688 cutinase Mycobacterium parascrofulaceum ATCC BAA-614 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium parascrofulaceum; 0.798509411 0.810529057 0.789729941 0.798721345 0.817074957 0.796991187 170721878 catb Pseudomonas putida W619 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 0.887191842 0.809243944 0.85830681 0.801783241 366160352 cda Escherichia sp. TW09308 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia; 1.070888833 1.115629456 1.073083529 1.062277646 1.118736159 1.081228954 1.080890006 1.04828372 1.071701429 1.100107447 199652761 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.768271873 0.841494248 326209150 B_lactamase_A Novosphingobium nitrogenifigens DSM 19370 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium nitrogenifigens; 0.807745728 0.834356752 110825138 cdh Rhodococcus sp. RHA1 Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 0.817606288 0.794157149 88797930 chitinase Reinekea sp. MED297 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Reinekea;species:Reinekea blandensis; 0.7801596 0.785234463 0.835345346 0.816064887 73541640 dehh109 Ralstonia eutropha JMP134 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 0.80301244 0.826345433 112379573 rubisco uncultured proteobacterium Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria; 0.793910105 0.818685848 296114907 pgk Gluconacetobacter hansenii ATCC 23769 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter hansenii; 0.783807017 0.805384042 302405158 ara Verticillium albo-atrum VaMs.102 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticillium;species:Verticillium alfalfae; 0.773911337 0.819824504 0.830929323 0.839306009 0.775323635 0.837949535 0.854945281 0.839552291 0.858458779 0.793775894 378598740 FBPase Sutterella parvirubra YIT 11816 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Sutterellaceae;genus:Sutterella;species:Sutterella parvirubra; 0.826295904 0.830184126 0.832106872 0.827614855 0.82184102 0.839176833 0.80620525 0.8163879 0.904023156 0.84829947 377807380 tfth Burkholderia sp. YI23 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 0.897820791 0.81004358 89045295 acetylglucosaminidase Oceanicola granulosus HTCC2516 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola granulosus; 0.779078719 0.840879882 0.800798585 0.811055805 302389367 fthfs Thermosediminibacter oceani DSM 16646 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacterales Family III. Incertae Sedis;genus:Thermosediminibacter;species:Thermosediminibacter oceani; 0.751173968 0.786281002 220914554 pectinase (pectate_lyase) Arthrobacter chlorophenolicus A6 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 0.796416177 0.860865343 282163034 nifh Methanocella paludicola SANAE Nitrogen Nitrogen fixation NA superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanocellales;family:Methanocellaceae;genus:Methanocella;species:Methanocella paludicola; 0.760291013 0.866057628 154297971 ara Botryotinia fuckeliana B05.10 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Botryotinia;species:Botryotinia fuckeliana; 0.774959898 0.818554211 0.830521283 0.785594205 0.781003503 0.848992154 384100048 amyA Rhodococcus imtechensis RKJ300 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus imtechensis; 0.826182919 0.901488167 374334931 arylest Oceanimonas sp. GK1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Oceanimonas; 0.888730386 0.85328197 0.769185978 0.828483042 0.771848196 0.825501422 152967510 ara Kineococcus radiotolerans SRS30216 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Kineosporiaceae;genus:Kineococcus;species:Kineococcus radiotolerans; 0.802898442 1.044656316 0.849949131 0.818585482 0.850132764 0.74783657 0.911566992 151302177 aps_apra Desulfovibrio sulfodismutans Sulfur adenylylsulfate reductase NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 1.2022381 1.159368033 1.17472285 1.176136766 1.166831298 1.181442342 1.162246186 1.133532571 1.138693568 1.127482926 1.155893861 1.206637441 312137935 bphd Rhodococcus equi 103S Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus equi; 0.811316073 0.821534004 300712504 dehh109 Halalkalicoccus jeotgali B3 Organic Remediation Chlorinated solvents NA superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halalkalicoccus;species:Halalkalicoccus jeotgali; 0.796105289 0.811859608 259165757 vana Corynebacterium efficiens YS-314 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium efficiens; 0.774142876 0.783161018 0.796143936 0.82395339 220933229 soxY Thioalkalivibrio sp. HL-EbGR7 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio;species:Thioalkalivibrio sulfidophilus; 0.829906211 0.891615252 0.838553719 0.798166783 0.902960857 0.854865073 0.862598065 0.827067583 0.840967579 0.882040377 0.846887509 0.849864804 241773691 ara Asticcacaulis excentricus CB 48 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis excentricus; 0.800059697 0.774509094 294884069 aoxb bacterium enrichment culture clone aoxauto141_4W Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 0.793505132 0.816331593 0.78661054 0.813329135 0.881470631 0.813556586 0.835424719 0.848054755 0.861640653 226946750 ppx Azotobacter vinelandii DJ Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Azotobacter;species:Azotobacter vinelandii; 0.810582412 0.790715317 386845555 chitinase Actinoplanes sp. SE50/110 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes; 0.825693944 0.799473192 332879273 amyA Capnocytophaga sp. oral taxon 329 str. F0087 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Capnocytophaga;species:Capnocytophaga sp. oral taxon 329; 0.84295441 0.803323459 0.830059697 0.89661455 0.773113482 0.902815177 0.983832314 0.926422584 0.987500081 0.920954845 0.896533405 0.839998454 0.833227913 317494196 amyA Enterobacteriaceae bacterium 9_2_54FAA Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae; 0.83454866 0.831734412 0.835298722 0.816015232 359426746 bphd Gordonia amarae NBRC 15530 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia amarae; 0.914276911 0.831970031 0.836447101 0.831393984 0.843763897 0.871233968 0.809543007 0.787764639 0.849573149 359764890 poba Gordonia polyisoprenivorans NBRC 16320 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia polyisoprenivorans; 0.916674792 0.829389845 0.856003902 0.848343599 0.930703097 0.844303498 0.864846939 0.800058504 0.895660869 0.890627096 0.861562244 0.857357587 0.813950852 0.863628052 0.821052402 0.901702015 78220718 ccmL Desulfovibrio alaskensis G20 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio alaskensis; 0.859928788 0.819761732 0.849938442 0.836552992 159898698 chitinase Herpetosiphon aurantiacus DSM 785 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Herpetosiphonales;family:Herpetosiphonaceae;genus:Herpetosiphon;species:Herpetosiphon aurantiacus; 0.7852599 0.852971102 0.85338694 0.838144011 0.830885729 0.841080328 0.811252452 0.837461506 0.769850234 0.83698184 77378465 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.811351545 0.793720842 0.812048236 0.822407083 0.814708439 0.799062103 323495987 PRI Vibrio sinaloensis DSM 21326 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio sinaloensis; 0.800442514 0.790998224 22596902 ppk uncultured bacterium Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria; 0.779370285 0.792823361 0.76718411 0.827588443 0.801238425 0.797723966 0.791889676 0.8259994 0.785571324 0.783781232 304438646 amyA Selenomonas sp. oral taxon 149 str. 67H29BP Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas sp. oral taxon 149; 0.835544076 0.79608441 0.80162984 0.795341757 0.846164032 0.786893688 372270087 xyll Marinobacterium stanieri S30 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacterium;species:Marinobacterium stanieri; 1.21883225 1.181235308 1.163736955 1.167224891 1.144408778 1.150443716 1.152048791 1.142586665 1.165433503 1.147029731 1.146167141 1.119850247 1.14961617 1.166335226 209171680 dsra Candidatus Thiobios zoothamnicoli Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Candidatus Thiobios; 0.813240464 0.788018576 257633728 ligninase Dichomitus squalens Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Polyporaceae;genus:Dichomitus; 0.798675119 0.788734484 296820740 glucoamylase Arthroderma otae CBS 113480 Carbon Cycling Carbon degradation Starch superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Arthrodermataceae;genus:Arthroderma;species:Arthroderma otae; 0.847091016 0.856863858 241204553 cysI Rhizobium leguminosarum bv. trifolii WSM1325 Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 0.855938218 0.804943753 0.815119635 109640289 rd Desulfitobacterium hafniense DCB-2 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 0.791253641 0.801147275 0.839514952 0.814222189 0.84145229 0.790088989 0.760408284 0.818526426 50542716 rubisco uncultured bacterium Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria; 0.788465951 0.79068891 0.803828229 0.80620786 0.818205922 0.817536784 325521740 tktA Burkholderia sp. TJI49 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 0.802314664 0.809877746 0.863191723 0.808845615 0.851436352 0.829925804 0.860676833 329908779 pgk Oxalobacteraceae bacterium IMCC9480 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae; 0.778611656 0.808572132 212171508 alkb uncultured bacterium Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria; 0.943191196 0.819076622 0.866098722 0.794483045 0.864410904 0.804922012 0.853684258 302405491 phenol_oxidase Verticillium albo-atrum VaMs.102 Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticillium;species:Verticillium alfalfae; 0.820434057 0.872952469 0.84694173 0.807216938 0.80883873 0.858495727 0.883341537 0.886197841 76884526 mer Nitrosococcus oceani ATCC 19707 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Nitrosococcus;species:Nitrosococcus oceani; 0.785609365 0.81609176 0.80617533 0.780241773 110826488 aps_apra uncultured Thiobacillus sp. Sulfur adenylylsulfate reductase NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus; 0.774160819 0.781444654 116634801 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.836181816 0.784041779 23013981 bco Magnetospirillum magnetotacticum MS-1 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum magnetotacticum; 0.761104636 0.841701019 0.858176357 0.798214802 45386113 narg unidentified bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.812707332 0.795731047 0.807653936 0.817339992 115386594 exopolygalacturonase_fungi Aspergillus terreus NIH2624 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 0.941571952 1.098135461 0.991017974 1.059418629 0.865316939 1.025343411 0.839710193 1.14886264 1.132650388 1.077530726 1.123952786 1.084291666 1.197051941 1.106144311 0.801168982 1.00525386 375100650 fthfs Saccharomonospora cyanea NA-134 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora cyanea; 0.795800335 0.806890039 0.839066958 0.815471564 169831014 amyA Candidatus Desulforudis audaxviator MP104C Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Candidatus Desulforudis;species:Candidatus Desulforudis audaxviator; 0.80032956 0.932747614 1.059368726 0.868307928 0.867230978 0.915122809 302406462 pec_Cdeg Verticillium albo-atrum VaMs.102 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticillium;species:Verticillium alfalfae; 0.80661164 0.778265027 0.831395754 0.799084329 377814995 chrr Pantoea stewartii subsp. stewartii DC283 Metal Homeostasis Chromium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea;species:Pantoea stewartii; 0.801803236 0.807881639 154244885 bphd Xanthobacter autotrophicus Py2 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 0.869736916 0.851128325 0.877840745 0.874490733 0.851096335 0.811762296 0.828516167 0.864711928 0.850523436 0.855242292 0.868422347 0.86102644 0.821634099 0.860573702 0.849757336 0.869493915 169758448 cysJ Pseudomonas putida W619 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 0.780854464 0.823159687 0.82747176 0.840588921 271964557 acetylglucosaminidase Streptosporangium roseum DSM 43021 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 0.789878738 0.823286848 83944274 poba Sulfitobacter sp. EE-36 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 0.784623114 0.844428359 255708192 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.833521642 0.785313819 0.782415794 0.838265531 365424722 amyA Bradyrhizobium sp. STM 3843 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.793731832 0.826759749 315588163 ppx Intrasporangium calvum DSM 43043 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Intrasporangium;species:Intrasporangium calvum; 0.772733277 0.796383471 384193427 amyA Bifidobacterium animalis subsp. lactis BLC1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium animalis; 0.781588932 0.856633327 0.877351714 0.842380329 0.812166135 0.902819708 0.848878078 0.834577893 0.804647851 0.826593905 0.775564184 0.870250454 324316624 amyA Deinococcus proteolyticus MRP Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus proteolyticus; 0.804121224 0.856466763 165988040 rubisco uncultured bacterium Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria; 0.830059042 0.827174745 0.811782636 0.843948874 0.80771683 0.827758974 0.823389576 116198565 lactase_fungi Chaetomium globosum CBS 148.51 Carbon Cycling Carbon degradation Lactose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 0.818666638 0.802770347 0.822903387 0.914027469 0.832295261 0.763037006 0.882722377 40253077 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.834826124 0.872587471 0.798960358 0.81396416 0.828288564 0.793146541 0.767089697 0.816547744 0.903543151 0.825798646 0.821531655 119950573 ppx Arthrobacter aurescens TC1 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter aurescens; 0.886265138 0.927225116 0.858341953 0.806460398 5359710 mannanase Cellulomonas fimi Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas; 0.78580779 0.78443535 0.825111446 0.858698731 0.816845245 0.838696608 0.849665173 374095537 one_ring_23diox Gordonia sp. QH-11 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia; 0.840344777 0.878640126 0.86261421 0.839808172 0.829873247 0.8595287 0.869971883 0.851947015 0.885492864 0.855388401 0.872398714 0.875753859 0.823747686 87281179 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.761333957 0.789209055 111024844 one_ring_23diox Rhodococcus jostii RHA1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 0.767375959 0.816764301 0.810824839 157913480 nirs Dinoroseobacter shibae DFL 12 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 0.805722719 0.881570841 0.851750317 0.839066692 0.858221157 0.788812366 0.829878279 0.875515502 124488309 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.83600422 0.795946781 0.825596262 0.800055491 0.80426051 0.867499533 357201465 rgl Paenibacillus terrae HPL-003 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus terrae; 0.803690184 0.838269299 323134636 arsc uncultured bacterium Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 0.803044574 0.822553197 347750697 terc Bacillus coagulans 36D1 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus coagulans; 1.16309313 1.173317989 1.174555814 1.180465601 1.142986867 1.141000012 1.22872502 1.176463677 1.139820425 1.110580064 1.1769531 1.132649935 1.100769411 1.085852698 1.11609326 1.165732399 1.13454157 54309293 mer Photobacterium profundum SS9 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium profundum; 0.760818753 0.803764858 0.814128459 0.801098595 239613770 endochitinase Ajellomyces dermatitidis ER-3 Carbon Cycling Carbon degradation Chitin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces dermatitidis; 0.792133436 0.807090904 0.833661172 0.796145456 0.806617731 0.809457532 68241374 amyA Prosthecochloris aestuarii DSM 271 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Prosthecochloris;species:Prosthecochloris aestuarii; 0.826722969 0.828892295 110678192 cpne Roseobacter denitrificans OCh 114 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter denitrificans; 0.797309 0.884857456 0.836275897 0.843812436 0.774894952 0.825531539 295969308 amyA Corynebacterium ammoniagenes DSM 20306 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium ammoniagenes; 0.817624282 0.815972284 0.823460856 0.839854441 0.884008193 0.82700068 0.815843293 242765885 ara Talaromyces stipitatus ATCC 10500 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 0.807138708 0.828318192 94449436 mcra uncultured archaeon Carbon Cycling Methane Methanogenesis superkingdom:Archaea; 0.808123945 0.784969485 0.785813722 0.90224356 261340993 amyA Enterobacter cancerogenus ATCC 35316 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter cancerogenus; 0.797407114 0.778762318 0.806850481 453224 exoglucanase Phanerochaete chrysosporium Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Corticiales;family:Corticiaceae;genus:Phanerochaete; 0.803782111 0.812314412 119947603 terc Arthrobacter aurescens TC1 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter aurescens; 0.773445155 0.974162179 1.004817531 960298 endochitinase Aeromonas sp. 10S-24 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas; 0.956019329 0.942954742 0.926469543 0.995237156 0.921090335 0.95744973 0.961610141 0.902224629 0.933083639 0.879169697 0.935391901 0.841617337 0.909777084 0.927098909 0.958434283 221069113 chna Comamonas testosteroni KF-1 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 0.89272004 0.824788081 0.862994215 0.841241471 0.839210843 0.830051827 0.813673445 0.823408703 0.826960757 151424738 sqr Sulfurovum sp. NBC37-1 Sulfur Sulfide Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;genus:Sulfurovum; 0.82026846 0.810299937 214044190 tktA Roseobacter sp. GAI101 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 0.795222376 0.821422648 0.803656471 0.81539208 0.800018121 0.787898466 256393823 amyA Catenulispora acidiphila DSM 44928 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 0.82847043 0.815089743 0.821929371 0.809254565 0.828335322 0.841788768 239831656 urec Ochrobactrum intermedium LMG 3301 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum intermedium; 0.843756471 0.906079471 0.769701455 0.884641988 0.840450691 0.971873304 194308613 mdh Pelodictyon phaeoclathratiforme BU-1 Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Pelodictyon;species:Pelodictyon phaeoclathratiforme; 0.807991537 0.78044792 157918261 nbac Salinispora arenicola CNS-205 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora arenicola; 0.861036551 0.817393854 0.798173357 0.804485889 0.810391586 0.789821004 0.836900993 313117091 chitinase Halogeometricum borinquense DSM 11551 Carbon Cycling Carbon degradation Chitin superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halogeometricum;species:Halogeometricum borinquense; 0.794070844 0.841153204 0.812385571 0.867070908 0.884350377 0.858220857 315276363 xylanase Paenibacillus vortex V453 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus vortex; 0.870204453 0.857966397 0.827365895 0.867372569 0.821184705 0.881023652 0.816635667 0.84845563 0.797006231 0.864965672 94425511 limeh Sphingomonas sp. SKA58 Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 0.794145829 0.874665434 0.849118133 0.792618009 229762714 amyA Streptosporangium roseum DSM 43021 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 0.909826068 0.784602452 0.812842761 0.843564067 0.829617424 0.803469828 29466020 norb uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.822843324 0.999796852 0.815940752 0.771451994 15155025 cysJ Agrobacterium tumefaciens str. C58 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium fabrum; 0.806951492 0.76523537 145604206 protease_serine_fungi Magnaporthe oryzae 70-15 Carbon Cycling Carbon degradation protein superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 0.787773116 0.802726339 0.844440196 0.774563842 0.841810988 0.834729332 0.839315562 0.858720018 359363407 terc Achromobacter arsenitoxydans SY8 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter;species:Achromobacter arsenitoxydans; 0.841249664 0.778344276 0.74799921 0.804882705 23013908 tktA Magnetospirillum magnetotacticum MS-1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum magnetotacticum; 1.19760108 1.217430387 1.198944892 1.19022347 1.204317784 1.173710497 1.222412204 1.158437431 1.163850616 1.106861543 1.175366343 1.19787221 397320896 poba Rhizobium sp. CF142 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 0.814919246 0.790899103 83950247 ben_bcla Roseovarius nubinhibens ISM virulence NA NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius;species:Roseovarius nubinhibens; 0.848576426 0.79254446 0.852287349 0.799825556 0.799743715 0.809008514 0.809095633 83632559 chitinase Hahella chejuensis KCTC 2396 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Hahellaceae;genus:Hahella;species:Hahella chejuensis; 0.941435644 0.98913887 0.883140378 0.916652151 0.928281031 0.920386665 0.880577913 0.933469552 0.978657863 0.937935116 0.881103917 0.913740309 0.912436689 0.929557862 0.888701333 290571962 tehb Stackebrandtia nassauensis DSM 44728 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Glycomycetaceae;genus:Stackebrandtia;species:Stackebrandtia nassauensis; 0.763926479 0.863178509 367469489 Sir Patulibacter sp. I11 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Solirubrobacterales;family:Patulibacteraceae;genus:Patulibacter; 1.144504553 1.144059484 1.126643398 1.155073062 401773752 nfsa_2 Methylocystis sp. SC2 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylocystaceae;genus:Methylocystis; 0.77861917 0.818876484 345039055 atza Bilophila sp. 4_1_30 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Bilophila; 0.789366529 0.797895871 0.775981764 0.842677761 0.783671436 0.810447623 379988327 dsrB uncultured bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.810220066 0.812282959 0.840935124 0.842987573 33456990 one_ring_23diox Cycloclasticus sp. A5 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Cycloclasticus; 0.876510149 0.809457891 372476876 mannanase Opitutaceae bacterium TAV5 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 0.889257609 0.808629138 0.808189355 0.851939453 0.809261192 0.829591588 0.83398287 121717267 Dyp Aspergillus clavatus NRRL 1 Organic Remediation halogenated compounds NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 0.809796365 0.793065601 86143553 chna Flavobacterium sp. MED217 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Leeuwenhoekiella;species:Leeuwenhoekiella blandensis; 0.927424404 0.873485661 390172347 vgb Nitrolancetus hollandicus Lb Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Chloroflexi;class:Thermomicrobia;order:Sphaerobacterales;family:Sphaerobacteraceae;genus:Nitrolancetus;species:Nitrolancetus hollandicus; 0.832567408 0.919777982 0.83806099 0.838288331 0.826289586 0.975195375 0.841947749 0.921861659 0.894608923 355672893 alginase Clostridium citroniae WAL-17108 Carbon Cycling Carbon degradation Alginate superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium citroniae; 0.836752698 0.787859593 345873279 rubisco Thiorhodococcus drewsii AZ1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiorhodococcus;species:Thiorhodococcus drewsii; 0.798721824 0.817991082 0.82126091 0.803982981 0.809250197 116665025 amyA Methanosaeta thermophila PT Carbon Cycling Carbon degradation Starch superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosaetaceae;genus:Methanosaeta;species:Methanosaeta thermophila; 0.836776454 0.85328317 0.823578142 0.926347658 0.924625863 0.920882822 302833215 mg_chelatase Volvox carteri f. nagariensis Secondary metabolism Pigments Chlorophyll superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Chlorophyceae;order:Chlamydomonadales;family:Volvocaceae;genus:Volvox;species:Volvox carteri; 1.043860141 0.99516286 1.041993157 0.974544461 0.989162579 1.021387701 0.998800112 0.960037846 0.991962357 0.973238891 327313011 cda Prevotella denticola F0289 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella denticola; 0.854924848 0.782056422 0.821354417 0.91526757 0.792732398 0.842331456 0.794043219 0.805514203 0.843487631 121607962 vana Verminephrobacter eiseniae EF01-2 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 0.814814945 0.798416034 334858984 cbea Frankia symbiont of Datisca glomerata Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 1.105277785 1.070138312 133918739 GAPDH_Calvin Mesorhizobium mediterraneum Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium; 0.802902107 0.911211824 0.858321155 1.02351014 1.014007583 0.881921565 0.910536862 0.943176772 0.901691589 0.943116042 0.8505116 333900249 GAPDH_Calvin Pseudomonas fulva 12-X Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fulva; 0.810668898 0.804921857 0.815581652 0.804511519 0.844666089 0.826497905 46917282 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.784107234 0.846744788 0.82878684 0.846334908 0.820921947 0.810531788 0.80774605 0.816269576 384105110 arsc Rhodococcus imtechensis RKJ300 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus imtechensis; 0.786469078 0.862934092 0.82411221 0.822917867 0.834132968 0.837729395 0.857109426 0.797750234 0.807336208 302663456 phospholipase_D_fungi Trichophyton verrucosum HKI 0517 Carbon Cycling Carbon degradation Phospholipids superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Arthrodermataceae;genus:Trichophyton;species:Trichophyton verrucosum; 0.986288929 0.944347214 1.070199812 332295273 rubisco Thermodesulfobium narugense DSM 14796 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermodesulfobiaceae;genus:Thermodesulfobium;species:Thermodesulfobium narugense; 0.85575798 0.87203684 0.784991118 0.938366379 0.912061393 255296009 ppk Rothia mucilaginosa ATCC 25296 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Rothia;species:Rothia mucilaginosa; 0.818366589 0.819491625 0.803153075 0.780736675 0.946687647 0.87216407 71915210 endoglucanase Thermobifida fusca YX Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Thermobifida;species:Thermobifida fusca; 0.792983694 0.805565989 0.799443182 0.831358628 220681952 endopolygalacturonase_fungi Thanatephorus cucumeris Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Cantharellales;family:Ceratobasidiaceae;genus:Thanatephorus; 0.853275551 0.813477509 0.822378569 0.833653361 0.833038786 0.80518335 0.812402442 255938415 RgaE Penicillium chrysogenum Wisconsin 54-1255 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 0.89657244 0.865195115 0.797957209 0.868453523 0.898794249 0.851763693 0.807040556 0.848045888 0.793564752 0.898586788 27376231 xyla Bradyrhizobium japonicum USDA 110 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 0.823613628 0.812300792 0.806370912 0.843777111 346994249 linb Ruegeria sp. TW15 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 0.813554186 0.841384282 259485685 pec_Cdeg Aspergillus nidulans FGSC A4 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 0.931083855 0.922749144 12082148 Rubisco_Haptophyceae Isochrysis galbana Carbon Cycling Carbon fixation Calvin cycle superkingdom:Eukaryota;order:Isochrysidales;family:Isochrysidaceae;genus:Isochrysis; 0.865476497 0.85381865 0.822146988 0.898870644 0.870647226 0.831388854 0.843196989 0.823579922 0.823381711 221156822 bphd Thermomicrobium roseum DSM 5159 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Chloroflexi;class:Thermomicrobia;order:Thermomicrobiales;family:Thermomicrobiaceae;genus:Thermomicrobium;species:Thermomicrobium roseum; 0.927009178 0.842944916 0.864455752 0.922202668 0.79295007 0.85010655 0.838106769 33566761 mult_ring_12DiOx Bordetella parapertussis Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella; 0.92712773 0.815315226 242223359 phospholipase_D_fungi Postia placenta Mad-698-R Carbon Cycling Carbon degradation Phospholipids superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Postia;species:Postia placenta; 0.82949432 0.794828954 0.829850176 0.803043202 345444585 amyA Bacillus megaterium WSH-002 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus megaterium; 0.77213484 0.784514044 0.869222013 0.904844662 0.796563704 126249394 fumarase_DiC4HB Pyrobaculum calidifontis JCM 11548 Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum calidifontis; 0.778163436 0.817843437 4115621 endochitinase Xanthomonas sp. AK Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas; 1.106814485 1.105381727 1.05564221 335436500 phn Halorhabdus tiamatea SARL4B Organic Remediation Herbicides related compound NA superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halorhabdus;species:Halorhabdus tiamatea; 0.790943353 0.843406813 0.813567786 0.840145553 0.827438117 34104622 endochitinase Chromobacterium violaceum ATCC 12472 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Chromobacterium;species:Chromobacterium violaceum; 1.031898013 0.932226688 1.04343712 0.979756803 0.970002955 1.009484106 1.094845657 0.986956082 0.97170961 0.96483415 1.020677149 0.914324677 115358084 tfth Burkholderia cepacia AMMD Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ambifaria; 1.123554007 1.130750706 1.140773173 1.116676581 373548328 alkb Mycobacterium tusciae JS617 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tusciae; 0.857472855 0.975563236 46307961 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.786623071 0.807692706 0.849726273 0.86632844 76781914 bphF1 Alcaligenes sp. O-1 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Alcaligenes; 0.791537521 0.822771457 67523121 glucoamylase Aspergillus nidulans FGSC A4 Carbon Cycling Carbon degradation Starch superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 0.992002021 1.037853787 0.998448759 1.050621625 0.965104425 0.961387743 0.99839134 0.985522009 0.951803676 242217049 ara Postia placenta Mad-698-R Carbon Cycling Carbon degradation Hemicellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Postia;species:Postia placenta; 1.234640364 1.196593044 1.192168242 1.186803987 1.212568304 1.172378814 1.181844444 1.178558637 1.21640454 1.19403311 1.145629052 1.179865389 1.166413656 1.142211165 73538820 GAPDH_Calvin Ralstonia eutropha JMP134 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 0.827786089 0.971296466 0.764140083 422314301 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.756130254 0.803020283 0.80691052 0.952441168 300312758 PRI Herbaspirillum seropedicae SmR1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herbaspirillum;species:Herbaspirillum seropedicae; 0.880825209 0.840097096 0.85824861 0.810864948 0.850499914 0.85856631 0.818351838 0.982931604 0.80609201 0.939347534 0.886102004 115394402 pmoa uncultured bacterium Carbon Cycling Methane Methane oxidation superkingdom:Bacteria; 0.793836787 0.838687422 0.817804039 0.821643176 0.82832755 0.78976915 0.810736077 254514465 GAPDH_Calvin gamma proteobacterium NOR5-3 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 0.864766163 0.839116667 0.812410858 0.780766308 330465939 mdlc Verrucosispora maris AB-18-032 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Verrucosispora;species:Verrucosispora maris; 0.758573089 0.832579369 240102660 apu Thermococcus gammatolerans EJ3 Carbon Cycling Carbon degradation Starch superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Thermococcus;species:Thermococcus gammatolerans; 0.885514818 0.822430449 291515066 acetylglucosaminidase Alistipes shahii WAL 8301 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Rikenellaceae;genus:Alistipes;species:Alistipes shahii; 0.815778881 0.826623041 0.845933422 0.857090195 0.841353691 0.859916085 0.825789575 0.813324287 0.774177351 0.843645106 226346722 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.813891285 0.877822353 0.844913957 0.865185625 0.839342891 0.829861895 0.88960535 0.816288659 0.85744656 0.848108615 0.867375483 0.820141759 0.84426781 0.844577825 384219369 ppx Bradyrhizobium japonicum USDA 6 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 0.822287586 0.838550887 308186139 acetylglucosaminidase Pantoea vagans C9-1 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea;species:Pantoea vagans; 0.932365751 0.767887397 0.984062228 1.000728009 0.82916592 0.794997434 357023388 PRI Mesorhizobium amorphae CCNWGS0123 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium amorphae; 1.067281935 1.070642421 1.11367039 1.053322905 1.10114297 1.100132521 21886618 one_ring_23diox Thauera sp. DNT-1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Thauera; 0.948598184 0.931421328 0.914329259 0.903736111 1.014664968 0.946255153 0.928092785 319786080 cysI Pseudoxanthomonas suwonensis 11-1 Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Pseudoxanthomonas;species:Pseudoxanthomonas suwonensis; 1.180272407 1.146154298 1.16592717 1.169954915 1.151586479 1.131128971 1.147812752 356578759 mannanase uncultured microorganism Carbon Cycling Carbon degradation Hemicellulose 0.797733984 0.787782336 0.780017087 0.84756608 0.802085769 0.845312213 374608689 amyA Mycobacterium tusciae JS617 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tusciae; 0.826793075 0.817671225 89573724 endochitinase Lecanicillium lecanii Carbon Cycling Carbon degradation Chitin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Cordycipitaceae;genus:Torrubiella;species:Torrubiella confragosa; 0.834569049 0.810943107 209401758 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.798801773 0.836098182 387130091 sqr Methylophaga sp. JAM7 Sulfur Sulfide Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Methylophaga; 0.856051169 0.861502464 0.834811785 0.874745403 0.824522967 0.851253173 0.812775011 0.814240996 6492287 amie Geobacillus stearothermophilus Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 0.799021675 0.839007983 0.813651908 0.845406731 0.851379294 0.975728254 0.933608751 0.8724203 0.803967309 0.835210515 0.828695759 0.793639416 0.836448395 373251481 ara Nesterenkonia sp. F Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Nesterenkonia; 0.794719459 0.835863447 0.850261728 0.832156609 0.823912201 0.80352979 0.784145652 78485186 CsoSCA Thiomicrospira crunogena XCL-2 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Thiomicrospira;species:Thiomicrospira crunogena; 0.955747315 1.023967212 0.882414427 1.085700391 0.871309185 1.008815109 1.005304883 374573065 tktA Bradyrhizobium sp. WSM471 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.81811829 0.8220164 0.829789691 315417533 trze Asticcacaulis excentricus CB 48 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis excentricus; 0.803391028 0.80324567 0.836617045 0.811665684 0.804156092 0.861315518 0.815937728 0.792957887 0.809891155 334140514 cysI Novosphingobium sp. PP1Y Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 0.770592386 0.806602449 0.798054125 154345255 GAPDH_Euglenozoa Leishmania braziliensis MHOM/BR/75/M2904 Other Phylogenetic NA superkingdom:Eukaryota;order:Kinetoplastida;family:Trypanosomatidae;genus:Leishmania;species:Leishmania braziliensis; 0.810644847 0.856240303 142189 dsra Archaeoglobus fulgidus Sulfur sulfite reduction NA superkingdom:Archaea;phylum:Euryarchaeota;class:Archaeoglobi;order:Archaeoglobales;family:Archaeoglobaceae;genus:Archaeoglobus; 0.811242323 0.822197571 0.846302975 0.867869887 354585487 amyA Paenibacillus lactis 154 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus lactis; 0.814426454 0.805203904 118588350 FBP_aldolase Stappia aggregata IAM 12614 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 0.79280505 0.815295577 255933347 nitrilase Penicillium chrysogenum Wisconsin 54-1255 Organic Remediation Aromatics Other aromatics superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 1.062730173 1.138438746 1.031621858 0.994601109 33391361 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.809565936 0.775082395 0.814728564 0.803588363 323470184 amyA Arthrobacter phenanthrenivorans Sphe3 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter phenanthrenivorans; 0.793218016 0.81936032 0.91652259 0.890327962 0.824269268 0.878273331 0.881252534 0.803453472 0.857824717 0.852426413 0.836724715 0.816856886 0.871584068 15130902 phytase Trametes pubescens Phosphorus Phytic acid hydrolysis NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Trametes; 0.882978403 0.805276852 0.785316783 0.836754969 0.810091687 283484399 pec_Cdeg Marssonina brunnea f. sp. 'multigermtubi' Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Dermateaceae;genus:Marssonina;species:Marssonina brunnea; 0.830312163 0.795889747 90424396 FBPase Rhodopseudomonas palustris BisB18 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 0.764813142 0.827073761 0.857439444 0.805183316 0.850905032 0.803903619 72123629 catb Ralstonia eutropha JMP134 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 0.780114861 0.858843526 372474799 cellobiase Opitutaceae bacterium TAV5 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 0.803167727 0.783414755 0.806570621 0.826112194 357199454 xyla Paenibacillus terrae HPL-003 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus terrae; 0.850608058 0.837280107 119503486 pgk marine gamma proteobacterium HTCC2080 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 0.796109149 0.815992483 0.817983194 0.813114413 206687309 GAPDH_Calvin Rhodobacterales bacterium Y4I Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 0.831964771 0.832098372 0.829159617 0.830379936 0.789786142 0.83285091 0.888474719 0.789793058 0.829748259 0.817247661 354583281 amyA Paenibacillus lactis 154 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus lactis; 0.848998839 0.875826043 0.828708384 0.910371883 0.90720484 0.866194519 0.823503885 0.871966617 0.837958749 255258526 soxY Sideroxydans lithotrophicus ES-1 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Gallionellales;family:Gallionellaceae;genus:Sideroxydans;species:Sideroxydans lithotrophicus; 0.825668672 0.831439301 0.831442009 0.826734629 153864882 napa Beggiatoa sp. SS Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Thiotrichaceae;genus:Beggiatoa; 0.78688588 0.849213081 0.86514899 0.83376682 0.823248273 210069207 p450aro Penicillium marneffei ATCC 18224 Organic Remediation Aromatics polycyclic aromatics superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces marneffei; 0.829349507 0.907643996 312620106 cda Eremococcus coleocola ACS-139-V-Col8 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Aerococcaceae;genus:Eremococcus;species:Eremococcus coleocola; 0.958386428 0.899022868 0.880771995 0.842208671 0.881964928 0.908508768 0.832424612 0.881185187 0.81342485 0.833763827 0.87207443 0.91592772 0.933437795 0.899447323 81251122 urec Nitrosospira sp. NRS527 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosospira; 0.872454209 0.880318393 0.829057776 0.977589068 0.903867014 0.887896644 373952810 xylanase Mucilaginibacter paludis DSM 18603 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Mucilaginibacter;species:Mucilaginibacter paludis; 0.799100527 0.869572753 0.803781847 0.811153328 0.867959182 0.799750327 0.878292179 0.781028774 0.858396568 388256580 mannanase Cellvibrio sp. BR Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio; 0.855542243 0.820831379 0.827034301 0.919675132 0.791699113 0.838210836 0.85673576 0.845941224 171465252 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.972737446 0.778535252 0.782853031 0.7774481 339512955 narg Salmonella bongori NCTC 12419 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella bongori; 0.798940038 0.88554224 0.893969803 0.828244891 0.831944513 0.83613326 0.862155223 0.913349035 0.814809873 0.794232278 145349352 actin_Viridiplantae Ostreococcus lucimarinus CCE9901 Other Phylogenetic NA NA 0.989636271 0.941816869 1.000630121 0.891083902 0.992238401 0.972649888 0.966148672 0.953182682 81429144 cellobiase Lactobacillus sakei subsp. sakei 23K Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus sakei; 0.827312015 0.814131722 0.806957649 0.813684598 90903257 aoxb uncultured bacterium Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 0.828160176 0.80240479 133778514 endochitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 1.041974952 0.921964513 0.969501903 0.958697785 0.952717848 0.907923536 0.921634544 0.974970853 0.941467873 0.889950128 0.893518828 0.911164465 0.936117866 0.935846192 110599661 linb Geobacter sp. FRC-32 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 0.78244768 0.908063863 21040221 exoglucanase Talaromyces emersonii Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces; 1.215370586 1.191436744 1.199793221 1.219342858 1.214302416 343502207 nosz Vibrio tubiashii ATCC 19109 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio tubiashii; 0.83296425 0.839901246 0.817003388 0.822885223 0.780482878 0.785814996 0.866743772 46117194 pme_Cdeg Gibberella zeae PH-1 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Gibberella;species:Gibberella zeae; 0.841563948 0.796685249 0.862778652 0.823442429 0.793099675 0.808937483 0.821700989 0.819323152 13815939 sqr Sulfolobus solfataricus P2 Sulfur Sulfide Oxidation NA superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Sulfolobales;family:Sulfolobaceae;genus:Sulfolobus;species:Sulfolobus solfataricus; 0.821612737 0.925738383 0.828492854 0.803879523 0.834237332 0.836685435 0.825099885 0.822869203 0.813267601 337748709 cda Paenibacillus mucilaginosus KNP414 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 0.836400847 0.807132972 0.809957146 0.786762861 0.805206339 0.86891641 261212724 pula Vibrio sp. RC341 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 0.80884947 0.80168682 372269863 mer Marinobacterium stanieri S30 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacterium;species:Marinobacterium stanieri; 0.80823123 0.813426631 0.789615089 8777586 proO Sphingomonas paucimobilis Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 0.836547905 0.821364066 219861431 RgaE Arthrobacter chlorophenolicus A6 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 0.768212922 0.787967874 0.818760355 0.778587031 388262789 poba Hydrogenophaga sp. PBC Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Hydrogenophaga; 0.842885409 0.879616989 217976659 exaa(moxf) Methylocella silvestris BL2 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Methylocella;species:Methylocella silvestris; 0.790308234 0.790507919 0.805368938 0.803204416 0.809946895 163744301 GAPDH_Calvin Oceanibulbus indolifex HEL-45 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanibulbus;species:Oceanibulbus indolifex; 0.785108562 0.777588411 0.804525075 0.785287672 0.786993778 2072732 quinoline Pseudomonas putida Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.786826486 0.878485562 217503525 nitrilase Methylocella silvestris BL2 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Methylocella;species:Methylocella silvestris; 0.790039462 0.782519547 0.783712355 0.77300527 8468531 glucoamylase Lentinula edodes Carbon Cycling Carbon degradation Starch superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Marasmiaceae;genus:Lentinula; 0.813360761 0.849720429 0.814995764 0.836682769 0.803406125 119477761 alpha_galactosidase_fungi Neosartorya fischeri NRRL 181 Carbon Cycling Carbon degradation Other superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 0.778866184 0.793250767 0.858165386 0.83890277 15840604 narg Mycobacterium tuberculosis CDC1551 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tuberculosis; 0.817244782 0.789345078 0.79800285 0.814898472 0.831423663 0.817280859 73538760 chnb Ralstonia eutropha JMP134 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 0.933446578 0.814921775 385139031 amoa uncultured bacterium Nitrogen Nitrification NA superkingdom:Bacteria; 0.905509385 0.839522043 56785444 phenol_oxidase Trametes sp. 420 Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Trametes; 0.827376963 0.812603439 326635599 phytase Pantoea agglomerans Phosphorus Phytic acid hydrolysis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 0.785586422 0.805813511 0.796365425 0.808140881 0.779094036 333940576 vdh Novosphingobium sp. PP1Y Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 0.819128286 0.84021387 0.790370443 46307998 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.793264291 0.797102487 229490414 amyA Rhodococcus erythropolis SK121 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 1.242610584 1.215143482 1.216572573 1.185498111 1.184813612 1.168917581 347761684 pgk Gluconacetobacter xylinus NBRC 3288 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter xylinus; 0.962160701 0.910008522 0.838264028 0.854652669 0.814684493 0.79234687 0.839375453 109702340 xylc Pseudoalteromonas atlantica T6c Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas atlantica; 0.787279017 0.881081409 63003127 one_ring_12diox uncultured soil bacterium Organic Remediation Aromatics Other aromatics superkingdom:Bacteria; 1.027197834 1.030915811 1.030874848 0.989468814 0.984513106 1.045962094 1.012354869 1.059364688 133915613 endochitinase Saccharopolyspora erythraea NRRL 2338 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 0.804561187 0.809379414 0.821090223 0.879716726 0.796337422 0.911519227 0.820205798 0.77537714 0.836776332 270345854 pectinase (pectate_lyase) Dickeya dadantii Ech586 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya dadantii; 0.761026474 0.83206421 0.869830742 0.930801534 353209699 TIM Hyphomicrobium denitrificans 1NES1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium;species:Hyphomicrobium denitrificans; 0.772491361 0.788021516 407255545 alkb Alcanivorax dieselolei B5 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax;species:Alcanivorax dieselolei; 0.792956942 0.842443323 0.901801515 0.822896699 300390370 fthfs uncultured bacterium Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria; 0.743959275 0.802848429 0.78920242 0.809480863 377539786 napa Escherichia hermannii NBRC 105704 Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia hermannii; 0.797003299 0.816919142 317969431 bphF1 Synechococcus sp. CB0205 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 0.816360696 0.77278409 229364572 gdh Pseudomonas fluorescens SBW25 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 0.774963602 0.820611832 356695999 chitinase Clostridium hathewayi WAL-18680 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hathewayi; 0.810521821 0.80791581 94471349 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.780208068 0.791397378 0.816727018 0.809909006 0.825635481 0.821269233 0.800950025 0.860877468 409402577 phn Acidocella sp. MX-AZ02 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acidocella; 0.803938515 0.804458442 119879226 badh Stenotrophomonas maltophilia R551-3 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 0.793774983 0.835652597 229589758 pectinase (pectate_lyase) Pseudomonas fluorescens SBW25 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 0.746488937 0.834849345 0.788376632 363984511 ccmL Thermanaerovibrio velox DSM 12556 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Synergistetes;class:Synergistia;order:Synergistales;family:Synergistaceae;genus:Thermanaerovibrio;species:Thermanaerovibrio velox; 0.976966076 0.759143152 194337793 ppx Pelodictyon phaeoclathratiforme BU-1 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Pelodictyon;species:Pelodictyon phaeoclathratiforme; 0.783391496 0.837093736 0.80311242 0.796034738 145205128 soxY Prosthecochloris vibrioformis DSM 265 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeovibrioides; 0.804053474 0.809291752 0.836776454 0.863813546 302584225 dsra uncultured Desulfosporosinus sp. Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfosporosinus; 0.820931636 0.775999859 347754660 linb Candidatus Chloracidobacterium thermophilum B Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Acidobacteria;genus:Candidatus Chloracidobacterium;species:Candidatus Chloracidobacterium thermophilum; 0.793945848 0.825729153 332334951 xylanase Haliscomenobacter hydrossis DSM 1100 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Saprospiraceae;genus:Haliscomenobacter;species:Haliscomenobacter hydrossis; 0.790606607 0.88425037 333396805 terc Lactobacillus coryniformis subsp. coryniformis KCTC 3167 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus coryniformis; 0.851638814 0.827702266 0.851078038 56962920 xylanase Bacillus clausii KSM-K16 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus clausii; 0.781966445 0.82810496 258573305 Sir Uncinocarpus reesii 1704 Sulfur sulfite reduction NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Onygenaceae;genus:Uncinocarpus;species:Uncinocarpus reesii; 0.834038533 0.875791015 0.821467596 0.835998189 0.819334236 0.836789234 0.841216846 0.865147357 0.891040909 34366094 endopolygalacturonase_fungi Aspergillus aculeatus Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 0.804218974 0.764442637 302925097 mannanase Nectria haematococca mpVI 77-13-4 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Nectria;species:Nectria haematococca; 0.833089786 0.797786718 0.865100202 0.812219265 251795355 xylanase Paenibacillus sp. JDR-2 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 0.833965046 0.840505989 0.78272594 0.822459852 0.803619338 0.850310679 0.80194132 0.794349535 336125546 chitinase Vibrio anguillarum 775 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio anguillarum; 0.79654064 0.831918442 0.782988107 224371587 alkk Desulfobacterium autotrophicum HRM2 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfobacterium;species:Desulfobacterium autotrophicum; 0.770504445 0.806598452 253987589 gdh Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Photorhabdus;species:Photorhabdus asymbiotica; 0.814711105 0.829664262 255950194 ara Penicillium chrysogenum Wisconsin 54-1255 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 0.768078904 0.824281072 152980548 ppx Janthinobacterium sp. Marseille Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Janthinobacterium; 0.819288288 0.8964177 0.883793344 0.846532053 0.837452468 0.86853618 0.884867382 209906957 arylest Enterobacter cancerogenus ATCC 35316 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter cancerogenus; 0.782365257 0.826525349 421953186 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.810295188 0.795272258 0.80716897 0.815007683 389694492 ben_bcla Microvirga sp. WSM3557 virulence NA NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Microvirga; 0.799443655 0.906405068 0.888052781 0.873780984 0.907838954 0.766581845 7592887 rubisco uncultured deep-sea autotrophic bacterium ORII-6 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 0.78607103 0.803531212 0.816515221 0.803915115 148654711 MCM Roseiflexus sp. RS-1 Carbon Cycling Carbon fixation 3-hydroxypropionate bicycle superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus; 0.850141641 0.806342725 361054800 PRK Sulfobacillus acidophilus DSM 10332 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XVII. Incertae Sedis;genus:Sulfobacillus;species:Sulfobacillus acidophilus; 0.841768448 0.857313528 22294871 CsoS1_CcmK Thermosynechococcus elongatus BP-1 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Thermosynechococcus;species:Thermosynechococcus elongatus; 0.814163287 0.785301741 328525126 acetylglucosaminidase Bacteroides fluxus YIT 12057 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides fluxus; 0.835855407 0.859254593 356477538 glucoamylase Mycobacterium thermoresistibile ATCC 19527 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium thermoresistibile; 0.822330515 0.870812572 0.855411126 0.806921856 0.808395566 0.861458147 0.799135517 0.843235051 0.816999242 346321983 ara Cordyceps militaris CM01 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Cordycipitaceae;genus:Cordyceps;species:Cordyceps militaris; 0.782242758 0.815550415 0.814510497 0.793321497 290570122 arsm Stackebrandtia nassauensis DSM 44728 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Glycomycetaceae;genus:Stackebrandtia;species:Stackebrandtia nassauensis; 0.760857576 0.814822226 311340294 phospholipase_A2_fungi Arthroderma gypseum CBS 118893 Carbon Cycling Carbon degradation Phospholipids superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Arthrodermataceae;genus:Arthroderma;species:Arthroderma gypseum; 0.790160837 0.852726365 160864134 ccmL "Salmonella enterica subsp. arizonae serovar 62:z4,z23:--" Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 0.797774149 0.809498265 119670394 ppx Azoarcus sp. BH72 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 0.788833297 0.918579441 145225542 cutinase Mycobacterium gilvum PYR-GCK Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 0.77884559 0.862821155 126719024 GAPDH_Calvin Roseobacter sp. SK209-2-6 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 0.759194382 0.776916888 305858747 atza Paenibacillus polymyxa E681 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus polymyxa; 0.770321583 0.863887225 164455264 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 0.792542643 0.823816849 336300048 pme Paenibacillus mucilaginosus KNP414 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 0.816188875 0.842474892 302199761 ccmL Thermosediminibacter oceani DSM 16646 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacterales Family III. Incertae Sedis;genus:Thermosediminibacter;species:Thermosediminibacter oceani; 0.830815751 0.809668293 0.842655449 0.786822035 154286816 endochitinase Ajellomyces capsulatus NAm1 Carbon Cycling Carbon degradation Chitin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces capsulatus; 0.790062381 0.799497033 0.785706955 0.801977887 0.810317851 0.780413452 77379067 mer uncultured bacterium Metal Homeostasis Mercury Detoxification superkingdom:Bacteria; 0.799917082 0.761878515 89896608 nifh Desulfitobacterium hafniense Y51 Nitrogen Nitrogen fixation NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 0.790108737 0.78727434 365090536 linb Acidovorax sp. NO-1 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 0.763056633 0.811659706 157315744 dmsa Shewanella sediminis HAW-EB3 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella sediminis; 0.774274703 0.849607412 0.819310008 0.806320852 0.790164755 0.822570454 0.850013322 270284661 amyA Bifidobacterium gallicum DSM 20093 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium gallicum; 0.776676002 0.788315696 0.825137121 0.780656747 66866193 nifh uncultured nitrogen-fixing bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.740538856 0.874044168 307770999 GAPDH_Calvin Roseibium sp. TrichSKD4 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseibium; 0.912340045 0.799348107 357428354 cellobiase Azospirillum lipoferum 4B Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum lipoferum; 0.843669464 0.734250242 118474078 sucD Campylobacter fetus subsp. fetus 82-40 Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter fetus; 0.771748402 0.77588237 116626375 amyA Candidatus Solibacter usitatus Ellin6076 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 0.83399733 0.823817126 0.799787897 0.828853066 0.825515492 0.801621085 0.818621901 0.784996763 0.806256256 0.846853414 56566202 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.79383853 0.78581584 269792113 arsm Thermanaerovibrio acidaminovorans DSM 6589 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Synergistetes;class:Synergistia;order:Synergistales;family:Synergistaceae;genus:Thermanaerovibrio;species:Thermanaerovibrio acidaminovorans; 0.812108639 0.839119153 0.77061062 0.822511008 229611195 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.77284247 0.78736846 0.847556805 0.836858384 146230647 arra Bacillus arseniciselenatis Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Anaerobacillus; 0.820863089 0.810448005 384094273 amyA Paenibacillus mucilaginosus K02 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 0.794624471 0.810241696 0.806109781 0.803622822 0.800881413 212541749 axe Penicillium marneffei ATCC 18224 Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces marneffei; 0.871435163 0.832417763 0.839865626 0.849916715 0.858004252 0.784852034 0.778395819 0.805425381 166714131 hbh Xanthomonas oryzae pv. oryzicola BLS256 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas oryzae; 0.767226232 0.782611744 192289978 soxY Rhodopseudomonas palustris TIE-1 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 0.809033554 0.81103988 262200158 cutinase Gordonia bronchialis DSM 43247 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia bronchialis; 0.794030562 0.81100455 120610779 endoglucanase Acidovorax citrulli AAC00-1 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax citrulli; 0.931852847 0.816273284 0.805404141 0.956922267 1.065443604 0.930490275 0.935487311 0.838612338 0.782896609 298244524 xylanase Ktedonobacter racemifer DSM 44963 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Chloroflexi;class:Ktedonobacteria;order:Ktedonobacterales;family:Ktedonobacteraceae;genus:Ktedonobacter;species:Ktedonobacter racemifer; 0.800768569 0.798938871 400330601 tfda Mycobacterium colombiense CECT 3035 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium colombiense; 0.785299547 0.781219044 99079220 nirk Bosea sp. PD 23 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bosea; 0.761318475 0.823519595 118472845 linb Mycobacterium smegmatis str. MC2 155 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 0.968524465 0.786110639 308068245 inulinase Paenibacillus polymyxa E681 Carbon Cycling Carbon degradation Inulin superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus polymyxa; 0.766577891 0.815321871 296426640 phenol_oxidase uncultured bacterium Carbon Cycling Carbon degradation Lignin superkingdom:Bacteria; 0.922358233 0.783361219 0.81184583 0.819037208 83404790 nirs uncultured organism Nitrogen Denitrification NA 0.815235984 0.827582729 0.921799716 0.824218505 0.83081153 331087216 amyA Lachnospiraceae bacterium 9_1_43BFAA Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae; 0.808632357 0.789150339 229378127 ppx Oxalobacter formigenes HOxBLS Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Oxalobacter;species:Oxalobacter formigenes; 0.797201645 0.78950143 118590605 GAPDH_Calvin Stappia aggregata IAM 12614 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 0.788623683 0.794861522 162568573 aoxb uncultured bacterium Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 0.809869935 0.816407911 29125972 nosz uncultured soil bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.792906218 0.796159622 379045195 cysI Frateuria aurantia DSM 6220 Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Frateuria;species:Frateuria aurantia; 0.792294647 0.804041879 336294871 Sir Zymomonas mobilis subsp. pomaceae ATCC 29192 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Zymomonas;species:Zymomonas mobilis; 0.82845314 0.812399386 169793646 napa uncultured bacterium Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria; 0.798941267 0.776784478 153898402 amie Methylobacterium extorquens PA1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium extorquens; 0.78536848 0.769248037 0.824418537 0.79910661 0.854761538 392964100 phn Fibrisoma limi BUZ 3 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Fibrisoma;species:Fibrisoma limi; 0.786761644 0.827962926 262349341 chitinase Vibrio sp. RC586 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 0.863965389 1.056726556 0.829494694 0.790626999 0.829588751 0.807827121 0.774249826 0.867319366 291514142 amyA Alistipes shahii WAL 8301 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Rikenellaceae;genus:Alistipes;species:Alistipes shahii; 0.777021644 0.815724147 0.803769694 0.8193641 222053901 dsra Geobacter sp. FRC-32 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter daltonii; 0.805441845 0.80909221 260773593 tktA Vibrio metschnikovii CIP 69.14 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio metschnikovii; 0.790958571 0.815039097 321169207 amyA Rahnella sp. Y9602 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Rahnella; 0.773405157 0.812964051 219863644 CsoS1_CcmK Cyanothece sp. PCC 7425 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 0.780550708 0.821156907 0.88801615 0.776050852 110823833 catechol Rhodococcus sp. RHA1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 0.781349276 0.799063431 0.806820047 0.771460195 52346968 amyA Bacillus licheniformis DSM 13 = ATCC 14580 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus licheniformis; 0.78770322 0.811241694 0.844605202 0.918265457 0.838660817 68518304 arylest Shewanella baltica OS155 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella baltica; 0.817114476 0.824163277 87198562 one_ring_12diox Novosphingobium aromaticivorans DSM 12444 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium aromaticivorans; 0.771950856 0.788252619 88702530 nosz uncultured soil bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.819295014 0.812075408 112462209 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.794251049 0.778622517 85707134 GAPDH_Calvin Roseovarius sp. 217 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 0.767643694 0.804484825 83972390 nosz uncultured alpha proteobacterium Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 0.799865116 0.759076737 365894730 oxdb Bradyrhizobium sp. STM 3843 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.791617807 0.820296328 0.797199695 0.834887572 163793437 urec alpha proteobacterium BAL199 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 0.797100579 0.825147034 359423248 ppk Gordonia amarae NBRC 15530 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia amarae; 0.803087949 0.772462417 23491746 phenol_oxidase Streptomyces lavendulae Carbon Cycling Carbon degradation Lignin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 0.85122068 0.833359733 161579035 xyla Rhodopirellula baltica SH 1 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Rhodopirellula;species:Rhodopirellula baltica; 0.783865796 0.801375958 156032806 glucoamylase Sclerotinia sclerotiorum 1980 Carbon Cycling Carbon degradation Starch superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Sclerotinia;species:Sclerotinia sclerotiorum; 0.810237557 0.79265503 260935581 chitinase Vibrio orientalis CIP 102891 = ATCC 33934 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio orientalis; 0.816705145 0.795944409 323965299 bphd Escherichia coli M863 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia coli; 0.813922386 0.77930474 340533317 cysI Corynebacterium variabile DSM 44702 Sulfur Other NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium variabile; 0.766477311 0.867954413 0.814199316 0.861221839 0.80725469 297197361 amyA Streptomyces sviceus ATCC 29083 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 0.801671696 0.845783784 0.871266439 253699415 tehb Geobacter sp. M21 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 0.850889005 0.807204197 353544172 CsoS1_CcmK Desulfosporosinus meridiei DSM 13257 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfosporosinus;species:Desulfosporosinus meridiei; 0.76793105 0.825959856 0.842528266 0.844246104 0.762435839 0.797047827 0.803768409 167463448 hyaluronidase Paenibacillus larvae subsp. larvae BRL-230010 Carbon Cycling Carbon degradation hyaluronic acid superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus larvae; 0.77974541 0.777978943 0.805249144 0.818201884 342316588 aoxb Pseudomonas sp. 15AGV Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.836410141 0.810547834 0.84297288 0.812920013 297150490 xylanase Streptomyces pristinaespiralis ATCC 25486 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces pristinaespiralis; 0.78753761 0.80867153 0.820340038 0.827248 0.811816322 0.790099179 329568152 fthfs Paraprevotella xylaniphila YIT 11841 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Paraprevotella;species:Paraprevotella xylaniphila; 0.746076688 0.78649767 330403320 b_lactamase Lachnospiraceae bacterium 6_1_63FAA Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae; 0.795054212 0.808445496 53803762 fthfs Methylococcus capsulatus str. Bath Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylococcus;species:Methylococcus capsulatus; 0.817435199 0.858226006 0.785633329 0.821273304 0.804174948 88700194 TIM Congregibacter litoralis KT71 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Congregibacter;species:Congregibacter litoralis; 0.781771922 0.84556658 108805950 amyA Rubrobacter xylanophilus DSM 9941 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Rubrobacterales;family:Rubrobacteraceae;genus:Rubrobacter;species:Rubrobacter xylanophilus; 0.808779719 0.824820332 0.826051528 0.758004582 211956780 amyA Pseudovibrio sp. JE062 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 0.779137987 0.794228754 384466963 urec Citreicella sp. 357 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Citreicella; 0.754784157 0.785443743 242131689 pectinase (pectate_lyase) Dickeya dadantii Ech703 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya dadantii; 0.784955558 0.807593258 238927964 amyA Selenomonas flueggei ATCC 43531 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas flueggei; 0.803628225 0.8108777 331022693 alginase Pseudomonas syringae pv. oryzae str. 1_6 Carbon Cycling Carbon degradation Alginate superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas coronafaciens; 0.757726935 0.851581315 387889123 bend Escherichia blattae DSM 4481 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Shimwellia;species:Shimwellia blattae; 0.75381095 0.780379179 328841482 proO Asticcacaulis biprosthecum C19 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis biprosthecium; 0.772172866 0.782506893 238836759 xylanase Streptomyces sp. TN119 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 0.783787667 0.802203932 374334175 bend Oceanimonas sp. GK1 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Oceanimonas; 0.766899627 0.790168312 1911243 narg Pseudomonas fluorescens Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.784312113 1.003629638 0.777263781 0.809707547 0.999838429 406718185 one_ring_23diox uncultured bacterium Organic Remediation Aromatics Other aromatics superkingdom:Bacteria; 0.872784289 0.778694376 343918460 acetylglucosaminidase Prevotella oulorum F0390 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella oulorum; 0.76438042 0.797383752 111036262 xylxy Pseudomonas putida Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.905478165 0.973974741 0.9245307 0.951466462 0.916114404 0.97822891 1.028815586 1.003179927 0.991651279 1.015538388 0.98880764 0.877848147 324319441 xylanase Bacteroides salanitronis DSM 18170 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides salanitronis; 0.821719052 0.790480294 0.815637645 0.846436614 0.845349215 0.836638957 0.816150325 0.83807081 85069066 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.828545557 0.817893492 28378213 narg Lactobacillus plantarum WCFS1 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus plantarum; 0.76970313 0.802765982 332372394 rubisco uncultured bacterium Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria; 0.817293056 0.836175304 83951805 arsc Roseovarius nubinhibens ISM Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius;species:Roseovarius nubinhibens; 0.764831164 0.785736348 0.787386781 0.812800219 67525971 phospholipase_D_fungi Aspergillus nidulans FGSC A4 Carbon Cycling Carbon degradation Phospholipids superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 0.784125031 0.858330221 0.813435289 0.789694259 0.79950525 0.816906256 15130898 phytase cf. Ceriporia sp. CBS 100231 Phosphorus Phytic acid hydrolysis NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Ceriporia; 0.821899855 0.780927904 0.797891059 0.776647682 73541204 bphd Ralstonia eutropha JMP134 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 0.807221711 0.790096418 6318251 protease_serine_fungi Schizosaccharomyces pombe Carbon Cycling Carbon degradation protein superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Schizosaccharomycetes;order:Schizosaccharomycetales;family:Schizosaccharomycetaceae;genus:Schizosaccharomyces; 0.775816122 0.823298082 329964700 rgl Bacteroides fluxus YIT 12057 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides fluxus; 0.857553802 0.806788358 296181207 acetylglucosaminidase Segniliparus rotundus DSM 44985 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Segniliparaceae;genus:Segniliparus;species:Segniliparus rotundus; 0.781484254 0.948874491 0.843887389 0.783708091 134081093 p450aro Aspergillus niger Organic Remediation Aromatics polycyclic aromatics superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 0.76588706 0.829738597 0.829251465 0.804689354 0.792478357 336009639 amyA Lachnospiraceae bacterium 5_1_57FAA Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae; 0.831904535 0.800397213 325982351 urec Nitrosomonas sp. AL212 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas; 0.786853522 0.886842638 0.82335342 0.90986513 0.793107436 354615343 bphc Saccharomonospora paurometabolica YIM 90007 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora paurometabolica; 0.803826436 0.825477157 78355738 terc Desulfovibrio desulfuricans G20 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio alaskensis; 0.768995111 0.789721769 119116142 bphc uncultured bacterium Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria; 0.779075858 0.816754787 98960774 phenol_oxidase Gyromitra esculenta Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Pezizomycetes;order:Pezizales;family:Discinaceae;genus:Gyromitra; 0.821688307 0.79494533 320159570 terc Anaerolinea thermophila UNI-1 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Chloroflexi;class:Anaerolineae;order:Anaerolineales;family:Anaerolineaceae;genus:Anaerolinea;species:Anaerolinea thermophila; 0.780461481 0.809653007 0.844498932 0.813461526 0.781362289 148978109 atzb Vibrionales bacterium SWAT-3 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales; 0.76622123 0.862522123 0.837195056 0.801976292 71848480 mult_ring_12DiOx Dechloromonas aromatica RCB Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Dechloromonas;species:Dechloromonas aromatica; 0.959357629 1.017579002 0.938117068 0.881553143 1.019905198 1.024182268 0.968981476 0.958307656 0.90170405 0.888012205 1.036829208 300245787 ben_bcla Clostridia bacterium enrichment culture clone BF virulence NA NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia; 0.781411475 0.845815534 0.793691929 0.869139858 0.787237718 0.872722761 0.796435652 0.802024566 62003565 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.776355648 0.818424769 105958744 phenol_oxidase uncultured fungus Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi; 0.91330513 0.839786863 68055722 pula Exiguobacterium sibiricum 255-15 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium;species:Exiguobacterium sibiricum; 0.792131738 0.839773712 0.845858025 0.780003531 18077868 mult_ring_12DiOx uncultured bacterium Organic Remediation Aromatics Other aromatics superkingdom:Bacteria; 0.811804319 0.855516212 94314465 vana Ralstonia metallidurans CH34 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 0.796893454 0.77512945 395652041 catechol_b Pseudomonas extremaustralis 14-3 substr. 14-3b Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas extremaustralis; 0.771009348 0.781297462 0.795496987 0.768750277 0.793947667 0.791518262 189340375 dsra Chlorobium limicola DSM 245 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium limicola; 0.810464108 0.803425654 189188528 alpha_galactosidase_fungi Pyrenophora tritici-repentis Pt-1C-BFP Carbon Cycling Carbon degradation Other superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 0.775681876 0.816421022 193215582 CsoS1_CcmK Chloroherpeton thalassium ATCC 35110 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chloroherpeton;species:Chloroherpeton thalassium; 0.800491988 0.888928761 378549600 poba Citricoccus sp. CH26A Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Citricoccus; 0.8212153 0.788581925 367478348 cellobiase Bradyrhizobium sp. ORS 285 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.78347854 0.823284904 0.815470176 0.826476649 338739321 FBPase Hyphomicrobium sp. MC1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium; 0.768881942 0.78839051 327197279 dsrB uncultured bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.797214418 0.782353435 0.791495863 0.789368705 134077613 tannase_Cdeg Aspergillus niger Carbon Cycling Carbon degradation Tannins superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 0.772698085 0.789731566 375266388 arsc Vibrio sp. EJY3 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 0.812349782 0.793891081 374576255 tktA Bradyrhizobium sp. WSM471 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.798764456 0.823465696 0.841225354 0.814630972 47827047 mcra uncultured Methanosarcinales archaeon Carbon Cycling Methane Methanogenesis superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales; 0.831135953 0.808910589 55845973 nitrate_reductase uncultured eukaryote Nitrogen N Assimilation NA superkingdom:Eukaryota; 0.759228155 0.788216126 26514830 xylanase Trichoderma sp. SY Carbon Cycling Carbon degradation Hemicellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Hypocreaceae;genus:Hypocrea; 0.812955792 0.803125772 0.744808748 0.823666951 297555423 mdla Ktedonobacter racemifer DSM 44963 Organic Remediation Aromatics Aromatic alpha hydroxy acid superkingdom:Bacteria;phylum:Chloroflexi;class:Ktedonobacteria;order:Ktedonobacterales;family:Ktedonobacteraceae;genus:Ktedonobacter;species:Ktedonobacter racemifer; 0.764023254 0.803143583 194312822 AcnA Prosthecochloris aestuarii DSM 271 Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Prosthecochloris;species:Prosthecochloris aestuarii; 0.801767661 0.883816061 77378753 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.830288624 0.831553399 0.815136208 0.804924837 0.816409534 0.815791435 0.853301719 163855638 tfdb Bordetella petrii DSM 12804 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella petrii; 0.768868678 0.827895766 95111175 nitro Pseudomonas Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae; 0.773076033 0.820521432 75197040 terc Escherichia coli HS Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia coli; 0.79861125 0.851318849 329670864 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.885691079 0.76540424 398836168 mult_ring_12DiOx Herbaspirillum sp. YR522 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herbaspirillum; 0.781988315 0.817748716 397723669 poba Sphingobium sp. AP49 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium; 0.780760693 0.818338258 261368318 amyA Subdoligranulum variabile DSM 15176 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Subdoligranulum;species:Subdoligranulum variabile; 0.832056919 0.80105808 0.827103491 0.830866753 0.786281815 115397827 phospholipase_B_fungi Aspergillus terreus NIH2624 virulence degradation NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 0.82401607 0.809394264 0.792729198 0.796743533 0.805859782 333892776 linb Alteromonas sp. SN2 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alteromonas; 0.770281252 0.815188287 321260126 glx Cryptococcus gattii WM276 Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Tremellomycetes;order:Tremellales;family:Tremellaceae;genus:Filobasidiella;species:Cryptococcus gattii; 0.792071319 0.831261375 110612589 nifh uncultured nitrogen-fixing bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.822745185 0.82204852 0.788840183 169605831 rgl Phaeosphaeria nodorum SN15 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Phaeosphaeriaceae;genus:Parastagonospora;species:Parastagonospora nodorum; 0.792184364 0.784024508 0.760013693 0.799787279 119698479 dsra uncultured bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.81405239 0.804902443 0.830136897 0.801791173 354596338 Sir Brenneria sp. EniD312 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Brenneria; 0.791871138 0.797769303 0.902688109 0.86680172 87301512 mer Synechococcus sp. WH 5701 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 0.781194118 0.808551492 56692272 nifh Heliobacterium gestii Nitrogen Nitrogen fixation NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Heliobacteriaceae;genus:Heliobacterium; 0.822148701 0.825033751 0.823069088 0.823424142 94983087 silicon_transporter NA Metal Homeostasis Silicon Transport 0.80828811 0.799324053 325059441 cysJ Agrobacterium sp. H13-3 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium; 0.801885349 0.768060682 164455712 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 0.770727978 0.807196472 0.827869497 0.789750293 0.811028963 0.810077303 0.797955827 0.826010785 0.827258533 341591649 CsoS1_CcmK Veillonella sp. oral taxon 780 str. F0422 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Veillonella;species:Veillonella sp. oral taxon 780; 0.800376234 0.819261249 78165828 dsra Pelodictyon luteolum DSM 273 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Pelodictyon;species:Pelodictyon luteolum; 0.776981381 0.844519633 0.829289643 0.82108723 198267900 urec Octadecabacter antarcticus 238 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 0.78096044 0.787409051 0.830100348 0.81454613 0.815231943 0.781136943 0.796139043 0.790204457 0.827782062 334731085 ppk Ramlibacter tataouinensis TTB310 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Ramlibacter;species:Ramlibacter tataouinensis; 0.776921472 0.80990387 29125946 nosz uncultured soil bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.816108876 0.78363803 0.783285599 0.821472393 0.836876357 0.831245111 0.847719242 357202941 endoglucanase Paenibacillus terrae HPL-003 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus terrae; 0.859653999 0.828999394 119499800 endopolygalacturonase_fungi Neosartorya fischeri NRRL 181 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 0.779973516 0.827053349 10505267 one_ring_23diox Pseudoalteromonas sp. EH-2-1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas; 0.806541882 0.799746597 0.800283366 0.817197568 161075735 rubisco Methylacidiphilum infernorum V4 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Verrucomicrobia;order:Methylacidiphilales;family:Methylacidiphilaceae;genus:Methylacidiphilum;species:Methylacidiphilum infernorum; 0.803108365 0.810637359 0.787313771 0.810032847 0.806470219 0.80552261 261359769 oxdb Verticillium albo-atrum VaMs.102 Organic Remediation Aromatics Nitoaromatics superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticillium;species:Verticillium alfalfae; 0.805738649 0.826669907 333396735 badh Lactobacillus coryniformis subsp. coryniformis KCTC 3167 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus coryniformis; 0.819249552 0.781518554 0.825194023 0.781392574 18958171 nicdehydr Arthrobacter oxydans Organic Remediation Aromatics Heterocyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 0.853857656 0.78299411 389932589 tfth Burkholderia terrae BS001 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia terrae; 0.792680699 0.803747012 149131492 acetylglucosaminidase Bacteroides caccae ATCC 43185 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides caccae; 0.906464978 0.81201253 0.786359748 0.772969017 0.795838289 338536567 amyA Myxococcus fulvus HW-1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus fulvus; 0.773171292 0.779863919 126652053 cysJ Bacillus sp. B14905 Sulfur Reduction NA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 0.768489017 0.804537658 83643975 atzb Hahella chejuensis KCTC 2396 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Hahellaceae;genus:Hahella;species:Hahella chejuensis; 0.791301329 0.799145701 158524008 dsra uncultured bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.787702008 0.814204923 0.918677085 0.756477421 55791746 catechol_b uncultured bacterium Organic Remediation Aromatics Other aromatics superkingdom:Bacteria; 0.804326388 0.808927407 333973901 aps_apra uncultured Desulfoarculaceae bacterium Sulfur adenylylsulfate reductase NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfoarculaceae; 0.815837335 0.773340877 56678347 FBPase Ruegeria pomeroyi DSS-3 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 0.769180707 0.760629411 71383844 nasa uncultured bacterium Nitrogen Assimilatory N reduction NA superkingdom:Bacteria; 0.814551683 0.772291247 33456984 oxdb Pseudomonas chlororaphis Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas chlororaphis; 0.791448153 0.779426144 73749330 rd Dehalococcoides sp. CBDB1 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 0.780580038 0.840351797 359290661 ppx Thermus sp. CCB_US3_UF1 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus; 0.798770448 0.809045789 119398733 phospholipase_D_fungi Aspergillus clavatus NRRL 1 Carbon Cycling Carbon degradation Phospholipids superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 0.782179969 0.849829224 87281036 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.791591263 0.829471062 0.834943358 0.82494127 0.808350834 302890730 endochitinase Nectria haematococca mpVI 77-13-4 Carbon Cycling Carbon degradation Chitin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Nectria;species:Nectria haematococca; 0.779433246 0.816564239 71383830 nasa uncultured bacterium Nitrogen Assimilatory N reduction NA superkingdom:Bacteria; 0.998858327 0.79802663 270041649 gdh Serratia odorifera 4Rx13 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia plymuthica; 0.762481447 0.835731839 259164417 catechol Corynebacterium efficiens YS-314 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium efficiens; 0.767848742 0.882335124 337759296 pgk Hyphomicrobium sp. MC1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium; 0.771737067 0.795359662 397884686 nosz Pseudomonas fluorescens Q2-87 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 0.810955547 0.862846074 294884117 aoxb bacterium enrichment culture clone aoxheteroA34_4W Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 0.814926672 0.793975726 301119319 actin_Stramenopiles Phytophthora infestans T30-4 Other Phylogenetic NA superkingdom:Eukaryota;order:Peronosporales;genus:Phytophthora;species:Phytophthora infestans; 0.847430151 0.776708443 0.812914565 0.80143292 0.799149709 0.805397716 46114704 endopolygalacturonase_fungi Gibberella zeae PH-1 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Gibberella;species:Gibberella zeae; 0.765034215 0.779245996 333029437 acetylglucosaminidase Bacteroides coprosuis DSM 18011 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides coprosuis; 0.79566194 0.866852606 0.808681459 0.821144434 319930504 cysI Vibrio vulnificus MO6-24/O Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio vulnificus; 0.790781305 0.796021863 0.810473958 0.769599332 0.830182279 0.88368673 283133415 ppx Rothia mucilaginosa DY-18 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Rothia;species:Rothia mucilaginosa; 0.813105749 0.796063808 0.838679249 76164629 pula Chloroflexus aurantiacus J-10-fl Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aurantiacus; 0.768126001 0.80732695 0.780773761 0.814738568 359409511 FBPase SAR116 cluster alpha proteobacterium HIMB100 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 0.834585877 0.803946358 0.814170747 0.814165858 0.841977079 134301100 ccmL Desulfotomaculum reducens MI-1 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum reducens; 0.814092863 0.802286149 0.829502179 0.870448234 374413696 dsra uncultured prokaryote Sulfur sulfite reduction NA 0.7917128 0.935763154 0.781374304 0.810641564 88912859 xyla Acidothermus cellulolyticus 11B Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Acidothermaceae;genus:Acidothermus;species:Acidothermus cellulolyticus; 0.798542418 0.796445301 170061235 cpna Culex quinquefasciatus Organic Remediation Other Hydrocarbons NA superkingdom:Eukaryota;kingdom:Metazoa;phylum:Arthropoda;class:Insecta;order:Diptera;family:Culicidae;genus:Culex; 0.811941662 0.78277138 0.789708814 338220639 tehb Pasteurella multocida subsp. gallicida str. Anand1_poultry Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Pasteurella;species:Pasteurella multocida; 0.769181242 0.801473323 299745843 Dyp Coprinopsis cinerea okayama7#130 Organic Remediation halogenated compounds NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 0.820597369 0.767392655 0.797194248 0.802805557 209521737 phn Burkholderia sp. H160 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 0.815105955 0.817357934 189436023 cda Bacteroides intestinalis DSM 17393 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides intestinalis; 0.805650631 0.801320635 0.87672848 1.08624332 0.820656367 152982901 dehh109 Janthinobacterium sp. Marseille Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Janthinobacterium; 0.825527144 0.852000873 0.815018725 0.800048193 0.837307987 0.799228153 0.771040021 302670065 amyA Butyrivibrio proteoclasticus B316 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Butyrivibrio;species:Butyrivibrio proteoclasticus; 0.787320127 0.793394949 0.782726793 0.865671342 0.846786366 302196835 CsoS1_CcmK Clostridium saccharolyticum WM1 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium saccharolyticum; 0.867148589 0.824767769 62529086 nifh gamma Proteobacterium BAL286 Nitrogen Nitrogen fixation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 0.821265073 0.764913077 262259653 PRI Acinetobacter calcoaceticus RUH2202 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter calcoaceticus; 0.827401647 0.759081212 0.848758615 0.787993756 312194055 alginase Frankia sp. EuI1c Carbon Cycling Carbon degradation Alginate superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 0.802837664 0.796525621 0.802332823 0.810472858 377551988 mcra uncultured methanogenic archaeon Carbon Cycling Methane Methanogenesis superkingdom:Archaea;phylum:Euryarchaeota; 0.755024852 0.772167823 354960885 pgk Bradyrhizobium japonicum USDA 6 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 0.770804679 0.817662095 170942564 protease_aspartate_fungi Podospora anserina S mat+ Carbon Cycling Carbon degradation protein superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Lasiosphaeriaceae;genus:Podospora;species:Podospora anserina; 0.788128407 0.81289916 0.808895659 0.842664615 0.826368326 0.753787216 0.886600278 45386167 narg unidentified bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.759457004 0.78646698 0.783940858 0.802763503 0.787860614 0.841485234 0.787627798 219858660 terc Arthrobacter chlorophenolicus A6 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 0.77895989 0.873213174 147851891 nira Synechococcus sp. RCC307 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 0.771412637 0.785751174 254413185 tktA Microcoleus chthonoplastes PCC 7420 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Coleofasciculus;species:Coleofasciculus chthonoplastes; 0.825824746 0.818390718 0.794579528 0.798513757 380681834 FBP_aldolase Phaeospirillum molischianum DSM 120 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Phaeospirillum;species:Phaeospirillum molischianum; 0.777694128 0.828698348 0.823404981 0.811703939 0.826479466 0.777996648 379044668 endoglucanase Frateuria aurantia DSM 6220 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Frateuria;species:Frateuria aurantia; 0.801090955 0.825939698 0.769281547 0.823681972 355373873 amyA Prevotella sp. oral taxon 302 str. F0323 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Alloprevotella;species:Alloprevotella rava; 0.826851311 0.775820176 406718173 one_ring_23diox uncultured bacterium Organic Remediation Aromatics Other aromatics superkingdom:Bacteria; 0.850609846 0.808842264 149824018 bphF1 Limnobacter sp. MED105 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Limnobacter; 0.782717265 0.823405926 219847229 ppx Chloroflexus aggregans DSM 9485 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aggregans; 0.81125132 0.803205357 309777961 cellobiase Erysipelotrichaceae bacterium 3_1_53 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Firmicutes;class:Erysipelotrichia;order:Erysipelotrichales;family:Erysipelotrichaceae; 0.77758155 0.828892598 219116787 actin_Stramenopiles Phaeodactylum tricornutum CCAP 1055/1 Other Phylogenetic NA superkingdom:Eukaryota;phylum:Bacillariophyta;class:Bacillariophyceae;order:Naviculales;family:Phaeodactylaceae;genus:Phaeodactylum;species:Phaeodactylum tricornutum; 0.772310218 0.810024149 0.875421591 0.833115607 0.792780321 0.821767987 0.824910782 397890786 mhpa Pseudomonas chlororaphis subsp. aureofaciens 30-84 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas chlororaphis; 0.778647947 0.925310858 0.973599441 1.137098812 0.886948114 0.814923492 0.819027779 33391423 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.789546436 0.775324136 347532656 cda Roseburia hominis A2-183 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Roseburia;species:Roseburia hominis; 0.784248515 0.804126791 103488599 phytase Sphingopyxis alaskensis RB2256 Phosphorus Phytic acid hydrolysis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingopyxis;species:Sphingopyxis alaskensis; 0.850742254 0.83604696 0.816072421 0.799595287 88947140 ppx Desulfotomaculum reducens MI-1 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum reducens; 0.820658806 0.813925946 0.891142968 0.813502287 0.845671054 0.892813747 76574825 pectinase (pectate_lyase) Pseudomonas cichorii Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.819165153 0.809030326 0.793001832 355371434 cda Selenomonas infelix ATCC 43532 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas infelix; 0.835681396 0.831754478 296030712 urec Thermincola potens JR Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Thermincola;species:Thermincola potens; 0.836048945 0.774834776 139003470 nifh uncultured nitrogen-fixing bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.859497951 0.800858154 332377304 fthfs uncultured bacterium Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria; 0.922140605 0.792468031 78196632 ppx Synechococcus sp. CC9605 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 0.786113021 0.830101851 0.848433841 0.860222604 0.773350953 0.844128076 0.824376487 0.810191756 0.810773126 0.835326462 0.848002115 0.796255593 0.797669772 358010102 tktA Acinetobacter sp. P8-3-8 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 0.788844271 0.813918737 383456622 terc Corallococcus coralloides DSM 2259 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Corallococcus;species:Corallococcus coralloides; 0.805829149 0.845708274 0.820058495 0.824608356 0.794234554 0.841459151 355673570 xylanase Clostridium citroniae WAL-17108 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium citroniae; 0.863966536 0.866752764 373103261 qorl Cupriavidus basilensis OR16 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus basilensis; 0.788411359 0.77916754 0.801901322 0.815208599 116203865 tannase_Cdeg Chaetomium globosum CBS 148.51 Carbon Cycling Carbon degradation Tannins superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 0.810238832 0.826089665 260849930 xylanase Mitsuokella multacida DSM 20544 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Mitsuokella;species:Mitsuokella multacida; 0.801640856 0.804516947 391358256 amyA Geobacillus thermoleovorans Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 0.809235945 0.825505351 0.79650264 0.771569982 325051673 aoxb Acidiphilium multivorum AIU301 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acidiphilium;species:Acidiphilium multivorum; 0.787954744 0.844515469 83026004 alkb uncultured bacterium Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria; 0.781156711 0.81877091 32306887 vdh Acinetobacter sp. ADP1 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 0.800360801 0.819169155 0.784091761 0.823673389 78060288 alginase Burkholderia sp. 383 Carbon Cycling Carbon degradation Alginate superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 0.823789923 0.778916521 0.781001918 0.840661334 296094855 PEP_synthase Thermosphaera aggregans DSM 11486 Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Desulfurococcales;family:Desulfurococcaceae;genus:Thermosphaera;species:Thermosphaera aggregans; 0.801343837 0.815405611 0.805368061 0.79344817 386388643 nirk Haemophilus paraphrohaemolyticus HK411 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Haemophilus;species:Haemophilus paraphrohaemolyticus; 0.792377533 0.815751834 237883375 ara Micromonospora sp. ATCC 39149 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Micromonospora; 0.823293473 0.832468358 387591517 terc Bacillus methanolicus MGA3 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus methanolicus; 0.76526594 0.802599237 0.785867881 0.826058839 40218014 phenol_oxidase Ganoderma lucidum Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Ganodermataceae;genus:Ganoderma; 0.777891048 0.801227954 380681835 tktA Phaeospirillum molischianum DSM 120 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Phaeospirillum;species:Phaeospirillum molischianum; 0.891669159 0.829669376 0.811435249 0.823812384 0.824163527 0.789355425 0.828841413 0.810385647 0.906500225 0.753311274 338760140 FBP_aldolase Sinorhizobium fredii GR64 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium fredii; 0.824951961 0.780212052 68053497 arsc Leptospirillum ferriphilum Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Nitrospirae;class:Nitrospira;order:Nitrospirales;family:Nitrospiraceae;genus:Leptospirillum; 0.79088692 0.875196459 0.831990509 269786029 nosz Sphaerobacter thermophilus DSM 20745 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Chloroflexi;class:Thermomicrobia;order:Sphaerobacterales;family:Sphaerobacteraceae;genus:Sphaerobacter;species:Sphaerobacter thermophilus; 0.768534847 0.807438734 90655551 CsoS2 uncultured marine type-A Synechococcus GOM 4N23 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 0.762009802 0.820013259 153853180 ppk Dorea longicatena DSM 13814 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Dorea;species:Dorea longicatena; 0.816065243 0.900778742 0.789780786 0.82887376 68056074 pula Exiguobacterium sibiricum 255-15 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium;species:Exiguobacterium sibiricum; 0.815505875 0.806320216 147736210 mannanase Thermotoga petrophila RKU-1 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Thermotoga;species:Thermotoga petrophila; 0.794465101 0.807223073 0.791438116 99082005 FBPase Ruegeria sp. TM1040 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 0.782552718 0.8698462 0.850502706 0.785586529 212171512 alkb uncultured bacterium Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria; 0.761897865 0.794693473 385277616 urec gamma proteobacterium BDW918 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 0.829260862 0.786840474 367052655 glx Thielavia terrestris NRRL 8126 Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Thielavia;species:Thielavia terrestris; 0.816001837 0.785225682 388426912 mannanase Bacillus aerophilus KACC 16563 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 0.779656619 0.812727393 0.795079825 189185136 ppx Methylacidiphilum infernorum V4 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Verrucomicrobia;order:Methylacidiphilales;family:Methylacidiphilaceae;genus:Methylacidiphilum;species:Methylacidiphilum infernorum; 0.841017481 0.809946854 0.833309333 0.850814278 311067190 RgaE Bacillus atrophaeus 1942 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus atrophaeus; 0.87281942 0.784054959 0.81755775 0.813825595 260438530 amyA Butyrivibrio crossotus DSM 2876 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Butyrivibrio;species:Butyrivibrio crossotus; 0.835594482 0.859090798 0.814659621 0.831112093 0.806682923 383704966 pgk Rheinheimera nanhaiensis E407-8 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Rheinheimera;species:Rheinheimera nanhaiensis; 0.903048311 0.772852354 254262253 amyA Enterobacter helveticus Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Cronobacter; 0.803757674 0.791324763 0.822133435 0.797194444 0.844011658 401775148 nitro Methylocystis sp. SC2 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylocystaceae;genus:Methylocystis; 0.810560691 0.798047149 317395443 CsoS1_CcmK Bacillus sp. 2_A_57_CT2 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 0.806806832 0.795632605 238794180 ccmL Yersinia intermedia ATCC 29909 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia intermedia; 0.838133734 0.811162942 85829319 rgl Leeuwenhoekiella blandensis MED217 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Leeuwenhoekiella;species:Leeuwenhoekiella blandensis; 0.784124824 0.820436321 385183694 pcpe Burkholderia sp. Ch1-1 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 0.826954817 0.802872305 381365322 amyA Selenomonas ruminantium subsp. lactilytica TAM6421 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas ruminantium; 0.843131077 0.813564976 332654037 cda Ruminococcaceae bacterium D16 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae; 0.771091633 0.816965174 0.799410924 0.834216592 30269553 nasa uncultured bacterium Nitrogen Assimilatory N reduction NA superkingdom:Bacteria; 0.813122731 0.826213994 59711997 endochitinase Vibrio fischeri ES114 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Aliivibrio;species:Aliivibrio fischeri; 0.944904075 0.843430442 0.964067243 1.094109077 0.967699774 0.966600226 290349616 exaa(moxf) Bradyrhizobium sp. MAFF 211645 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.779540016 0.831612703 0.803288116 0.804766432 0.812071204 187926292 alkb Ralstonia pickettii 12J Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 0.857448329 0.819769718 134143109 alkb uncultured bacterium Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria; 0.746508203 0.850727151 291295500 amyA Meiothermus ruber DSM 1279 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Meiothermus;species:Meiothermus ruber; 1.063645537 0.999791017 1.032602865 1.000121573 358234175 catechol Acinetobacter sp. NBRC 100985 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 0.798580966 0.764791251 73541078 arylest Ralstonia eutropha JMP134 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 0.807626247 0.790080032 199594013 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.77720696 0.806401292 0.927094654 0.760432591 0.834436166 323366218 nifh uncultured microorganism Nitrogen Nitrogen fixation NA 0.797142087 0.797038438 0.790705721 0.807367807 0.810852277 281317833 beta_agarase Victivallis vadensis ATCC BAA-548 Carbon Cycling Carbon degradation Agar superkingdom:Bacteria;phylum:Lentisphaerae;class:Lentisphaeria;family:Victivallaceae;genus:Victivallis;species:Victivallis vadensis; 0.775557381 0.849153635 379043293 nbac Frateuria aurantia DSM 6220 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Frateuria;species:Frateuria aurantia; 0.833673824 0.873577998 194542117 bphF1 Mycobacterium tuberculosis C Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tuberculosis; 0.766895825 0.833371029 99083157 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.831073527 0.779496799 386273918 cysI Methylophaga sp. JAM1 Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Methylophaga; 0.795311332 0.836662635 151561416 arsc Ochrobactrum anthropi ATCC 49188 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum anthropi; 0.772845292 0.786670906 365268443 mult_ring_12DiOx uncultured bacterium Organic Remediation Aromatics Other aromatics superkingdom:Bacteria; 0.818816456 0.869748311 325267989 nosz Kingella denitrificans ATCC 33394 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Kingella;species:Kingella denitrificans; 0.75836253 0.847791661 324971652 acetylglucosaminidase Pedobacter saltans DSM 12145 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Pedobacter;species:Pedobacter saltans; 0.817596256 0.790902392 291580925 ppx Nitrosococcus halophilus Nc4 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Nitrosococcus;species:Nitrosococcus halophilus; 0.770786169 0.850417128 159106208 Sir Malassezia globosa CBS 7966 Sulfur sulfite reduction NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Exobasidiomycetes;order:Malasseziales;family:Malasseziaceae;genus:Malassezia;species:Malassezia globosa; 0.792413231 0.815797147 221155764 urec Thermomicrobium roseum DSM 5159 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Chloroflexi;class:Thermomicrobia;order:Thermomicrobiales;family:Thermomicrobiaceae;genus:Thermomicrobium;species:Thermomicrobium roseum; 0.770541459 0.780294244 222102714 nitro Agrobacterium vitis S4 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium vitis; 0.765859634 0.796388139 0.788782546 0.809864003 296015940 terc Planctomyces limnophilus DSM 3776 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Planctomyces;species:Planctomyces limnophilus; 0.840559317 0.849785357 0.907879609 0.785151058 154489166 amyA Bifidobacterium adolescentis L2-32 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium adolescentis; 0.795143709 0.790945453 270047920 phenol_oxidase Cerrena sp. WR1 Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Polyporaceae;genus:Cerrena; 0.815488104 0.805665079 0.78347425 388435796 xyla Rhodanobacter sp. 115 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Rhodanobacter; 0.806398061 0.826703638 68164658 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.775054817 0.778547007 110634738 mdla Mesorhizobium sp. BNC1 Organic Remediation Aromatics Aromatic alpha hydroxy acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 1.260881287 1.24583808 1.263524754 1.210256416 1.219188398 1.234892021 1.268837552 1.246750502 1.241061136 1.213779094 1.262368094 1.256298806 1.227910323 1.243469756 1.230857637 48527128 mcra uncultured Methanomicrobiales archaeon Carbon Cycling Methane Methanogenesis superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales; 0.792001398 0.828814907 0.817131968 0.888396944 0.794815626 336430558 cda Lachnospiraceae bacterium 3_1_57FAA_CT1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae; 0.808149139 0.817699183 0.832825991 0.859189084 0.826853845 27378197 arsc Bradyrhizobium japonicum USDA 110 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 0.802481477 0.798486816 0.850553228 1.158638151 148474726 napa uncultured bacterium Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria; 0.769174977 0.818367298 0.81628074 0.857080297 0.814274307 0.867097721 299816827 amyA Listeria grayi DSM 20601 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Listeriaceae;genus:Listeria;species:Listeria grayi; 0.809150862 0.792958045 297376021 norb Waddlia chondrophila WSU 86-1044 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Chlamydiae;class:Chlamydiia;order:Chlamydiales;family:Waddliaceae;genus:Waddlia;species:Waddlia chondrophila; 0.871016277 0.785749297 307771948 nirb Roseibium sp. TrichSKD4 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseibium; 0.808926907 0.820322329 317132650 fthfs Ethanoligenens harbinense YUAN-3 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ethanoligenens;species:Ethanoligenens harbinense; 0.788512606 0.787323005 62423205 mdlc Brevibacterium linens BL2 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Brevibacteriaceae;genus:Brevibacterium;species:Brevibacterium linens; 0.811544272 0.773343977 325546271 endoglucanase Xanthomonas gardneri ATCC 19865 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas gardneri; 0.775517225 0.804119648 0.879525024 0.818472709 0.769829109 115284366 vana Burkholderia cepacia AMMD Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ambifaria; 0.777756387 0.88178699 211905613 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.818137907 0.813027402 145235531 cellobiase Aspergillus niger Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 0.825425829 0.796137229 0.831999086 0.862533802 340247127 aps_apra uncultured bacterium Sulfur adenylylsulfate reductase NA superkingdom:Bacteria; 0.810714286 0.832619257 0.828753974 0.810983822 389580148 linb Desulfobacter postgatei 2ac9 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfobacter;species:Desulfobacter postgatei; 0.782127219 0.802470132 139003462 nifh uncultured nitrogen-fixing bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.89436967 0.823044472 0.840718695 0.932851136 0.826358355 83317086 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.755021739 0.799958964 0.771439707 189208606 exopolygalacturonase_fungi Pyrenophora tritici-repentis Pt-1C-BFP Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 0.784575029 0.780098195 0.776352794 0.810210021 0.845787798 0.796829387 340513907 nagg Trichoderma reesei QM6a Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Hypocreaceae;genus:Trichoderma;species:Trichoderma reesei; 0.792107755 0.822847605 302348162 amyA Acidilobus saccharovorans 345-15 Carbon Cycling Carbon degradation Starch superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Acidilobales;family:Acidilobaceae;genus:Acidilobus;species:Acidilobus saccharovorans; 0.780071482 0.882079981 0.834616723 0.816444793 0.92572285 0.842870729 157918908 bphF1 Salinispora arenicola CNS-205 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora arenicola; 0.745451074 0.829660301 296283160 nifh Citromicrobium bathyomarinum JL354 Nitrogen Nitrogen fixation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Citromicrobium;species:Citromicrobium bathyomarinum; 0.806538568 0.83007912 0.787722071 0.807314199 0.831450013 158304027 arsc Acaryochloris marina MBIC11017 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Cyanobacteria;genus:Acaryochloris;species:Acaryochloris marina; 0.789740195 0.798994316 83756406 amyA Salinibacter ruber DSM 13855 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;order:Bacteroidetes Order II. Incertae sedis;family:Rhodothermaceae;genus:Salinibacter;species:Salinibacter ruber; 0.819552602 0.881226875 342822682 tktA Vibrio nigripulchritudo ATCC 27043 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio nigripulchritudo; 0.792154332 0.832210654 0.81686841 0.822636276 0.795668094 0.794306362 0.8288996 289171473 chitinase Listeria seeligeri serovar 1/2b str. SLCC3954 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Listeriaceae;genus:Listeria;species:Listeria seeligeri; 0.830785697 0.774184464 320108183 ppx Terriglobus saanensis SP1PR4 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Terriglobus;species:Terriglobus saanensis; 0.814935357 0.919721997 150032829 exaa(moxf) Sinorhizobium medicae WSM419 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 0.802169891 0.77013634 29160311 exoglucanase Thielavia australiensis Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Thielavia; 0.781231552 0.773625818 325975947 dsrB uncultured bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.816732979 0.9022595 0.958939058 268609194 rgl Ruminococcus flavefaciens FD-1 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus;species:Ruminococcus flavefaciens; 0.811775275 0.787673172 385883151 amyA Micromonospora lupini str. Lupac 08 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Micromonospora;species:Micromonospora lupini; 0.863919154 0.916602188 38683276 hsp90_Fornicata Hexamita inflata Other Phylogenetic NA superkingdom:Eukaryota;family:Hexamitidae;genus:Hexamita; 0.844056831 0.809616975 0.80114609 0.788639593 0.815353296 357009928 cysJ Paenibacillus elgii B69 Sulfur Reduction NA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus elgii; 0.835309584 0.816966122 0.814090498 71894132 amyA Mycoplasma synoviae 53 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Tenericutes;class:Mollicutes;order:Mycoplasmatales;family:Mycoplasmataceae;genus:Mycoplasma;species:Mycoplasma synoviae; 0.880442985 0.80692734 0.812755256 0.829624068 0.985006474 0.867517672 84494335 amyA Janibacter sp. HTCC2649 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Janibacter; 0.805770556 0.871139772 0.846962809 0.836894045 39976023 nitrate_reductase Magnaporthe oryzae 70-15 Nitrogen N Assimilation NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 1.211347425 1.192763184 1.175145661 1.146118433 1.126433145 1.167400835 1.174945374 383761009 atza Caldilinea aerophila DSM 14535 = NBRC 104270 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Chloroflexi;class:Caldilineae;order:Caldilineales;family:Caldilineaceae;genus:Caldilinea;species:Caldilinea aerophila; 0.824480062 0.81183263 55978124 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.97599899 1.012808524 1.003452928 0.991457469 1.034848849 1.022470193 1.014180976 0.991297426 0.996567531 0.966707106 332710461 FBPase Moorea producta 3L Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Moorea;species:Moorea producens; 0.844994396 0.944049009 78223987 arsm Geobacter metallireducens GS-15 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter metallireducens; 0.81262904 0.783062646 89900944 amyA Rhodoferax ferrireducens T118 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Albidiferax;species:Albidiferax ferrireducens; 0.825345622 0.834362371 254449498 FBPase Octadecabacter antarcticus 238 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter arcticus; 0.829255637 0.820375065 251845633 endochitinase Paenibacillus sp. oral taxon 786 str. D14 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus sp. oral taxon 786; 1.115211958 1.173182013 1.113594539 1.148700902 1.144342397 1.105516988 1.144058968 1.084037835 1.105329795 1.07410259 1.114750852 1.173579334 319943345 TIM Lautropia mirabilis ATCC 51599 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Lautropia;species:Lautropia mirabilis; 0.838350865 0.768158813 0.844418755 0.788121756 0.804979574 0.880616575 0.796928348 0.850352912 0.790959901 0.853987453 157804765 APS_AprB Thiothrix nivea Sulfur adenylylsulfate reductase NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Thiotrichaceae;genus:Thiothrix; 0.823524299 0.80954084 0.790755009 0.764724194 221320647 amyA Bacillus subtilis subsp. subtilis str. JH642 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus subtilis; 0.84756858 0.835571255 2258313 mmox uncultured peat bog bacterium 24 Carbon Cycling Methane Methane oxidation superkingdom:Bacteria; 0.806236884 0.852189253 151581205 nifh Opitutaceae bacterium TAV2 Nitrogen Nitrogen fixation NA superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 0.900213901 0.83622944 24460036 cpne Comamonas sp. NCIMB 9872 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas; 1.035611908 1.024150758 1.006534784 1.063303958 1.006290211 1.049518767 148836643 PRI Vibrio shilonii AK1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio shilonii; 0.824251882 0.846934056 0.894308303 0.796313747 118424407 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.80381486 0.786980615 99035465 FBP_aldolase Ruegeria sp. TM1040 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 0.879740544 0.895433871 0.838498562 0.955741449 0.937805642 0.829448829 0.838310305 221736529 urec Agrobacterium vitis S4 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium vitis; 0.849354085 0.782401154 0.832715285 0.807654211 0.803039623 0.862171057 0.822960761 353676547 arylest Brenneria sp. EniD312 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Brenneria; 0.804388423 0.794480019 0.778485945 0.770154071 0.836091122 375133867 tktA Acinetobacter calcoaceticus PHEA-2 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter calcoaceticus; 0.81582914 0.792029788 0.770768997 255078694 actin_Viridiplantae Micromonas sp. RCC299 Other Phylogenetic NA superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Mamiellophyceae;order:Mamiellales;genus:Micromonas; 1.197759487 1.206352623 1.186677503 1.206850678 1.127848664 1.141043537 1.149808594 1.158810642 197627085 nasa Cyanobium sp. PCC 7001 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanobium; 0.812889443 0.795418092 393761544 catechol Alishewanella agri BL06 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alishewanella;species:Alishewanella agri; 0.894585866 0.805758177 73539681 nagg Ralstonia eutropha JMP134 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 1.119936977 1.136064234 1.122444528 1.1024075 212542935 tannase_Cdeg Penicillium marneffei ATCC 18224 Carbon Cycling Carbon degradation Tannins superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces marneffei; 0.836359981 0.824659354 70729461 chitinase Pseudomonas fluorescens Pf-5 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas protegens; 1.071073878 1.073085028 356675424 GAPDH_Calvin SAR116 cluster alpha proteobacterium HIMB100 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 0.859376277 0.80147896 0.933346553 0.999600395 120402452 cutinase Mycobacterium vanbaalenii PYR-1 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 0.8018599 0.781577477 0.835231664 0.778751627 0.834369885 0.854969004 357941879 mer Burkholderia sp. YI23 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 0.822861673 0.799712847 283781050 CsoS1_CcmK Pirellula staleyi DSM 6068 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Pirellula;species:Pirellula staleyi; 0.805837676 0.827467644 0.862123686 0.808081604 388063303 amyA Gardnerella vaginalis 00703Dmash Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Gardnerella;species:Gardnerella vaginalis; 0.842011519 0.858177824 151549192 gdh Brachyspira pilosicoli Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Brachyspiraceae;genus:Brachyspira; 0.880207604 0.802793957 0.815946485 0.864689862 88816551 Sir Pseudoalteromonas tunicata D2 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas tunicata; 0.89542093 1.038989134 1.092283653 0.823987949 410730953 mult_ring_12DiOx Thermus oshimai JL-2 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus;species:Thermus oshimai; 1.029972444 0.990948435 0.992604798 0.981018142 0.940727639 0.917408995 0.944172854 171694704 cutinase Podospora anserina S mat+ Carbon Cycling Carbon degradation Cutin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Lasiosphaeriaceae;genus:Podospora;species:Podospora anserina; 0.891749052 0.963156264 0.983933762 0.923288153 0.984222016 146402065 mmox Acidiphilium cryptum JF-5 Carbon Cycling Methane Methane oxidation superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acidiphilium;species:Acidiphilium cryptum; 0.843345465 0.815273742 0.852298771 0.828483378 76577426 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.864435917 0.823803163 0.887031563 0.802469305 0.801811269 0.799797736 0.855384181 294884141 aoxb bacterium enrichment culture clone aoxheteroA89_4W Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 0.799707625 0.847286514 384527629 amyA Rahnella aquatilis HX2 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Rahnella;species:Rahnella aquatilis; 0.826151325 0.841943081 0.834293909 0.839509411 149832378 amyA Ruminococcus obeum ATCC 29174 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Blautia;species:[Ruminococcus] obeum; 0.866755488 0.855453281 260598877 ppx Cronobacter turicensis z3032 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Cronobacter;species:Cronobacter turicensis; 1.08536129 1.014479832 388601883 acetylglucosaminidase Vibrio campbellii DS40M4 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio campbellii; 0.77874532 0.858636265 296426589 phenol_oxidase uncultured bacterium Carbon Cycling Carbon degradation Lignin superkingdom:Bacteria; 0.919700445 0.949566262 295705237 cysJ Bacillus megaterium DSM 319 Sulfur Reduction NA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus megaterium; 0.897723652 0.974715395 0.785319005 108798649 mult_ring_12DiOx Mycobacterium sp. MCS Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 0.83484839 0.812881441 387846286 amyA Fibrisoma limi BUZ 3 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Fibrisoma;species:Fibrisoma limi; 0.783082776 0.839643147 409188099 poba Comamonas sp. 7D-2 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas; 0.821655282 0.80410875 325961837 amyA Arthrobacter phenanthrenivorans Sphe3 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter phenanthrenivorans; 0.843687584 0.800837113 82527193 silicon_transporter NA Metal Homeostasis Silicon Transport 0.858793918 0.869791821 210074348 pme_Cdeg Penicillium marneffei ATCC 18224 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces marneffei; 0.809059692 0.793927664 187477747 tktA Bordetella avium 197N Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella avium; 0.828519244 0.785303514 344690004 rubisco uncultured bacterium Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria; 0.78317805 0.802729091 328525936 amyA Bacteroides clarus YIT 12056 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides clarus; 0.8746997 0.904036456 164456054 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 0.816466805 0.835748255 0.821058573 388545618 amyA Pseudomonas sp. M47T1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.808527134 0.801169674 393757537 one_ring_23diox Alcaligenes faecalis subsp. faecalis NCIB 8687 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Alcaligenes;species:Alcaligenes faecalis; 0.756009963 0.922889512 126460004 4hbcd_dic4hb Pyrobaculum calidifontis JCM 11548 Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum calidifontis; 0.952551772 0.927874295 0.826111875 0.915532268 0.95481734 334341887 APS_AprB Desulfotomaculum ruminis DSM 2154 Sulfur adenylylsulfate reductase NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum ruminis; 0.785230774 0.789177576 422314531 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.816026459 0.891804338 89043253 xylanase Oceanicola granulosus HTCC2516 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola granulosus; 0.841556714 0.756288111 0.873906918 0.830128334 72122962 nagg Ralstonia eutropha JMP134 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 0.807678847 0.839357708 0.813393319 323501841 CsoS1_CcmK Clostridium symbiosum WAL-14673 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium symbiosum; 0.862325376 0.800569406 393776716 mult_ring_12DiOx Ralstonia sp. PBA Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 1.057285276 1.033181643 350551732 soxY Thiorhodospira sibirica ATCC 700588 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thiorhodospira;species:Thiorhodospira sibirica; 0.787125601 0.849768098 83362844 rubisco Rhodobacter sphaeroides ATCC 17025 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 0.76986464 0.81445083 41408390 amyA Mycobacterium avium subsp. paratuberculosis K-10 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 1.126635403 1.15234065 1.09263665 1.089558172 1.092920245 238711180 cueo Yersinia rohdei ATCC 43380 Metal Homeostasis Copper Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia rohdei; 0.797264497 0.798653911 333483584 scnabc Amycolicicoccus subflavus DQS3-9A1 Organic Remediation Others NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Amycolicicoccus;species:Amycolicicoccus subflavus; 0.801632755 0.788163161 315498652 terc Asticcacaulis excentricus CB 48 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis excentricus; 0.840913959 0.795795677 0.815562943 74318642 rubisco Thiobacillus denitrificans ATCC 25259 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus;species:Thiobacillus denitrificans; 0.796960999 0.782972639 0.776477438 59044733 pectinase (pectate_lyase) uncultured bacterium Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria; 0.825632137 0.766645293 0.804035987 0.814778994 121945061 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 0.783367003 0.979661125 0.811314106 133778504 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 1.10569669 1.086866966 1.100748504 1.087821164 1.056295898 124257901 one_ring_23diox Rhodococcus sp. HDN3 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 0.8034938 0.817830924 262089466 nirk uncultured crenarchaeote Nitrogen Denitrification NA superkingdom:Archaea;phylum:Crenarchaeota; 0.887712603 0.796902907 0.944310619 0.870975928 198262767 pgk gamma proteobacterium HTCC5015 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 0.767526687 0.824337801 94972016 arsc Deinococcus geothermalis DSM 11300 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus geothermalis; 0.781958391 0.809923322 16151747 amyA Rhodothermus marinus Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;order:Bacteroidetes Order II. Incertae sedis;family:Rhodothermaceae;genus:Rhodothermus; 0.829850541 0.925582277 0.828408812 148256011 arsc Bradyrhizobium sp. BTAi1 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.851765111 0.845721072 115373097 pula Stigmatella aurantiaca DW4/3-1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 0.793832808 0.813654526 149211033 amyA Magnaporthe oryzae 70-15 Carbon Cycling Carbon degradation Starch superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 0.78338811 0.782447575 262201846 cysJ Gordonia bronchialis DSM 43247 Sulfur Reduction NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia bronchialis; 0.819988872 0.814395945 348596762 chitinase Oscillibacter valericigenes Sjm18-20 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Oscillospiraceae;genus:Oscillibacter;species:Oscillibacter valericigenes; 0.800632524 0.860793174 377528250 cmci Gordonia sputi NBRC 100414 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia sputi; 0.794797286 0.785835923 16506216 nasa uncultured marine bacterium Nitrogen Assimilatory N reduction NA superkingdom:Bacteria; 0.782216048 0.768549246 359684226 chitinase Leptospira santarosai str. 2000030832 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Leptospiraceae;genus:Leptospira;species:Leptospira santarosai; 0.795253326 0.789874718 291245484 aps_apra uncultured bacterium Sulfur adenylylsulfate reductase NA superkingdom:Bacteria; 0.75597154 0.840323238 88859470 amyA Pseudoalteromonas tunicata D2 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas tunicata; 0.893443244 0.86566681 0.802099757 0.849286428 328492255 nirb Photobacterium leiognathi subsp. mandapamensis svers.1.1. Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium leiognathi; 0.792269112 0.857577272 289450664 amyA Clostridiales genomosp. BVAB3 str. UPII9-5 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;species:Clostridiales genomosp. BVAB3; 0.821035402 0.900343881 0.847478703 217403337 hsp90_Stramenopiles Phaeodactylum tricornutum CCAP 1055/1 Other Phylogenetic NA superkingdom:Eukaryota;phylum:Bacillariophyta;class:Bacillariophyceae;order:Naviculales;family:Phaeodactylaceae;genus:Phaeodactylum;species:Phaeodactylum tricornutum; 0.78139646 0.789536953 0.788414087 218666451 glucoamylase Acidithiobacillus ferrooxidans ATCC 23270 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus ferrooxidans; 0.791898472 0.852374257 329955533 cda Bacteroides clarus YIT 12056 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides clarus; 0.817845808 0.847046651 295432015 RgaE Caulobacter segnis ATCC 21756 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter segnis; 0.821512091 0.810667341 21489737 tfth Ralstonia eutropha Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 0.780914097 0.826417514 342316534 aoxb uncultured bacterium Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 0.831388343 0.793676114 0.81455171 254392413 phenol_oxidase Streptomyces clavuligerus ATCC 27064 Carbon Cycling Carbon degradation Lignin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces clavuligerus; 0.809025609 0.769273253 407025122 one_ring_12diox Alcanivorax sp. W11-5 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax;species:Alcanivorax pacificus; 1.194984671 1.209621947 1.181684342 116619393 hbh Solibacter usitatus Ellin6076 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 1.06632134 1.108884634 1.070939031 1.077767136 308445524 aoxb Acidovorax sp. GW2 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 1.308672177 1.29459471 1.324341587 1.278491548 1.287170316 327195249 cox1_Viridiplantae Coccomyxa sp. C-169 Other Phylogenetic NA superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Trebouxiophyceae;family:Coccomyxaceae;genus:Coccomyxa;species:Coccomyxa subellipsoidea; 0.917456055 0.779859518 145229657 nagg Aspergillus niger Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 0.802372636 0.780640446 333603785 arylest Paenibacillus sp. HGF7 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 0.815448664 0.802321283 50542708 rubisco uncultured bacterium Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria; 0.800115051 0.805381669 0.778373778 349786206 rgh Thermobacillus composti KWC4 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Thermobacillus;species:Thermobacillus composti; 0.817777578 0.82653337 359823458 tfda Mycobacterium rhodesiae NBB3 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 0.805954715 0.778337669 86359238 xyla Rhizobium etli CFN 42 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 0.835233636 0.798981684 145590793 tmoabe Pyrobaculum arsenaticum DSM 13514 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum arsenaticum; 0.852125445 0.7779667 224463675 arylest Methylophaga thiooxydans DMS010 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Methylophaga;species:Methylophaga thiooxydans; 0.829220019 0.840484607 89513024 nifh uncultured nitrogen-fixing bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.828688507 0.798855245 85089754 RgaE Neurospora crassa OR74A Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Neurospora;species:Neurospora crassa; 0.851511536 0.766054838 114317061 chnc Granulibacter bethesdensis CGDNIH1 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Granulibacter;species:Granulibacter bethesdensis; 0.819175186 0.78584531 0.80949574 0.79835623 302468180 pme Streptomyces viridochromogenes DSM 40736 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces viridochromogenes; 0.813224719 0.793699619 146283160 arsc Pseudomonas stutzeri A1501 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 0.809032485 0.832083164 163855695 xylc Bordetella petrii DSM 12804 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella petrii; 0.925238377 0.955905208 1.046035226 85687775 nifh Erythrobacter sp. NAP1 Nitrogen Nitrogen fixation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter; 0.813949033 0.755622932 146404996 atzb Bradyrhizobium sp. BTAi1 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.821037372 0.786454717 0.769908825 111073791 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 0.818977164 0.832204104 20142116 dsra uncultured bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.776249983 0.891642056 307719264 chitinase Spirochaeta thermophila DSM 6192 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Spirochaeta;species:Spirochaeta thermophila; 0.816624323 0.7521727 39943524 tfth Magnaporthe grisea 70-15 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 0.892538119 0.791925893 86554196 Sir Synechococcus sp. JA-3-3Ab Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 0.81279366 0.768155448 0.774919337 0.806488498 171851576 ppx Corynebacterium urealyticum DSM 7109 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium urealyticum; 0.792539195 0.799717888 242812473 glx Talaromyces stipitatus ATCC 10500 Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 0.849242548 0.783982808 255932117 glucoamylase Penicillium chrysogenum Wisconsin 54-1255 Carbon Cycling Carbon degradation Starch superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 0.950937632 0.819665212 394453024 catechol Pontibacter sp. BAB1700 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Pontibacter; 0.84305635 0.780589836 328527271 amyA Actinomyces sp. oral taxon 170 str. F0386 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 170; 0.944808171 0.760919073 0.812648579 0.815946819 0.742848415 0.830143956 148512152 one_ring_23diox Pseudomonas putida F1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 0.823201437 0.754628786 358456915 tfda Frankia sp. CN3 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 0.809356889 0.806879782 0.754060392 0.829931695 227893606 ppx Lactobacillus ultunensis DSM 16047 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus ultunensis; 0.839611258 0.76777819 334140111 badh Novosphingobium sp. PP1Y Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 0.797961 0.828050908 225575750 amyA Blautia hydrogenotrophica DSM 10507 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Blautia;species:Blautia hydrogenotrophica; 0.868998694 0.756548671 33243185 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.916852917 0.810698553 0.778676499 0.822451689 83954355 tktA Sulfitobacter sp. NAS-14.1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 0.80761796 0.773749787 404496981 pchcf Geobacter metallireducens GS-15 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter metallireducens; 0.788541083 0.770022547 20501965 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.813175804 0.78957344 3059202 bphc Rhodococcus erythropolis Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 0.763160573 0.842292975 82801427 alkb bacterium alkW40 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria; 0.779028494 0.859081569 17742881 napa Agrobacterium tumefaciens str. C58 Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 0.764960993 0.824995437 383463026 ppx Saccharomonospora xinjiangensis XJ-54 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora xinjiangensis; 0.788822421 0.783880211 254511709 TIM Rhodobacteraceae bacterium KLH11 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 0.786779786 0.844223412 271965911 arsc Streptosporangium roseum DSM 43021 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 0.811951112 0.770300454 384084923 ppx Acidithiobacillus thiooxidans ATCC 19377 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus thiooxidans; 0.802583679 0.831136904 378404636 FBP_aldolase Rhodospirillum photometricum DSM 122 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum photometricum; 0.809312457 0.804602563 0.809889589 0.825113427 213013102 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.776968478 0.845523263 339328679 alkh Cupriavidus necator N-1 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 0.750355296 0.822897706 256783677 amyA Streptomyces lividans TK24 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces lividans; 0.806704414 0.868825034 182412691 amyA Opitutus terrae PB90-1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 0.768918751 0.831868462 197925856 amyA Streptomyces pristinaespiralis ATCC 25486 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces pristinaespiralis; 0.766364182 0.834032299 294085739 dmdA Candidatus Puniceispirillum marinum IMCC1322 Sulfur DMSP degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;genus:Candidatus Puniceispirillum;species:Candidatus Puniceispirillum marinum; 0.837036475 0.786913745 82568646 badh Rhodococcus erythropolis Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 0.769815352 0.843313027 170721001 amyA Pseudomonas putida W619 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 0.795580636 0.768027436 309398061 amyA Stigmatella aurantiaca DW4/3-1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 0.799717275 0.841742537 156446871 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.791251368 0.823405248 242214046 mannanase Postia placenta Mad-698-R Carbon Cycling Carbon degradation Hemicellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Postia;species:Postia placenta; 0.897604324 0.912731646 146304087 4hbcd Metallosphaera sedula DSM 5348 Carbon Cycling Carbon fixation 3-hydroxypropionate/4-hydroxybutyrate cycle superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Sulfolobales;family:Sulfolobaceae;genus:Metallosphaera;species:Metallosphaera sedula; 0.795455522 0.814364375 0.797776518 319798666 narg mine drainage metagenome Nitrogen Denitrification NA 0.797674055 0.83810047 148871957 fosa Vibrio harveyi HY01 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio campbellii; 0.809662849 0.839113911 384066927 amyA Fibrella aestuarina BUZ 2 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Fibrella;species:Fibrella aestuarina; 0.82880892 0.765990866 326656851 amyA Streptomyces griseus XylebKG-1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseus; 0.809787392 0.797053171 311741568 amyA Corynebacterium pseudogenitalium ATCC 33035 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium pseudogenitalium; 0.778892213 0.796114134 283829406 fthfs Candidatus Poribacteria sp. WGA-A3 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Poribacteria; 0.807191677 0.803189861 269832033 fthfs Vibrio harveyi 1DA3 Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio harveyi; 0.825736757 0.811956384 0.827661425 74056460 trzn Thiobacillus denitrificans ATCC 25259 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus;species:Thiobacillus denitrificans; 1.234186779 1.214237784 86196020 amyA Magnaporthe grisea 70-15 Carbon Cycling Carbon degradation Starch superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 0.81075113 0.771175812 256361491 chitinase Catenulispora acidiphila DSM 44928 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 1.286337395 1.30971386 348499933 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.826826873 0.79644675 329758493 atzd Gluconacetobacter sp. SXCC-1 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter; 0.823127451 0.79685918 262202658 urec Gordonia bronchialis DSM 43247 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia bronchialis; 0.957161664 0.807861469 3320413 cellobiase Phanerochaete chrysosporium Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Corticiales;family:Corticiaceae;genus:Phanerochaete; 0.952329712 0.797946356 109452431 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.798546132 0.907955761 339479084 cda Bifidobacterium breve UCC2003 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium breve; 0.788045335 0.83084236 302388333 CsoS1_CcmK Clostridium saccharolyticum WM1 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium saccharolyticum; 0.801650531 0.793389564 297539826 terc Methylotenera versatilis 301 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Methylophilales;family:Methylophilaceae;genus:Methylotenera;species:Methylotenera versatilis; 0.877319136 0.746728285 299752630 exoglucanase Coprinopsis cinerea okayama7#130 Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 0.743776326 0.855552986 340539229 arsm Microcystis aeruginosa PCC 7806 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Microcystis;species:Microcystis aeruginosa; 0.793991525 0.819259813 336101360 amyA Corynebacterium resistens DSM 45100 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium resistens; 0.828730572 0.890047785 319413974 phenol_oxidase uncultured bacterium Carbon Cycling Carbon degradation Lignin superkingdom:Bacteria; 1.22797841 1.236967278 229489548 atzb Rhodococcus erythropolis SK121 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 0.830298969 0.938897007 189231560 amyA Streptomyces glaucescens Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 1.249561028 1.239410968 387844322 amyA Fibrisoma limi BUZ 3 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Fibrisoma;species:Fibrisoma limi; 0.904090545 0.899746481 214028773 GAPDH_Calvin Ruegeria sp. R11 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 0.81039084 0.769852699 422314481 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.864299703 0.776753368 126035171 phenol_oxidase uncultured fungus Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi; 0.810185632 0.762196523 184192910 PRI Burkholderia phymatum STM815 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 0.942325095 0.747932532 133737563 gdh Herminiimonas arsenicoxydans Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herminiimonas; 0.762865609 0.808379006 18181972 dsrB Thermodesulfobium narugense Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermodesulfobiaceae;genus:Thermodesulfobium; 0.775138252 0.820724755 404259171 cmci Gordonia namibiensis NBRC 108229 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia namibiensis; 0.796015417 0.808460142 115401252 pel_Cdeg Aspergillus terreus NIH2624 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 0.770330186 0.828762169 371449993 nagg Comamonas testosteroni ATCC 11996 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 0.788301597 0.821955886 271500632 rgl Dickeya dadantii Ech586 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya dadantii; 0.780369568 0.827036955 385193826 nirk Haemophilus parainfluenzae HK262 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Haemophilus;species:Haemophilus parainfluenzae; 0.76105968 0.809939186 146328182 fthfs uncultured marine microorganism Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway 0.773174444 0.82068333 34498949 norb Chromobacterium violaceum ATCC 12472 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Chromobacterium;species:Chromobacterium violaceum; 0.751447224 0.804174087 111024845 dxna Rhodococcus jostii RHA1 Organic Remediation Aromatics Heterocyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 0.76282005 0.813220996 330958480 xyla Pseudomonas syringae pv. maculicola str. ES4326 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 0.803934503 0.818540458 68536202 terc Corynebacterium jeikeium K411 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium jeikeium; 0.762149266 0.82117692 284448033 nitrate_reductase uncultured eukaryote Nitrogen N Assimilation NA superkingdom:Eukaryota; 0.787080584 0.823854212 206601958 amyA Leptospirillum sp. Group II '5-way CG' Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Nitrospirae;class:Nitrospira;order:Nitrospirales;family:Nitrospiraceae;genus:Leptospirillum; 0.7466595 0.813877954 82523811 fthfs uncultured Chloroflexi bacterium Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Chloroflexi; 0.749799555 0.852895804 407804547 xylg Alcanivorax sp. W11-5 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax;species:Alcanivorax pacificus; 0.76234896 0.811096863 260775308 exochitinase Vibrio coralliilyticus ATCC BAA-450 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio coralliilyticus; 0.818071014 0.851968071 6978960 norb Alcaligenes faecalis Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Alcaligenes; 0.793456444 0.810838782 7023983 acetylglucosaminidase Aeromonas sp. 10S-24 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas; 0.782680169 0.833625268 299739871 chitin_deacetylase_fungi Coprinopsis cinerea okayama7#130 Carbon Cycling Carbon degradation Chitin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 0.761409785 0.815287509 91204414 fthfs Candidatus Kuenenia stuttgartiensis Carbon Cycling Carbon fixation Reductive acetyl每CoA pathway superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Candidatus Brocadiales;family:Candidatus Brocadiaceae;genus:Candidatus Kuenenia; 0.768668125 0.814994072 393703333 amyA Scardovia wiggsiae F0424 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Scardovia;species:Scardovia wiggsiae; 0.829378334 0.826002014