Publications in 2024

  1. Xi Peng, Shang Wang, Miaoxiao Wang, Kai Feng, Qing He, Xingsheng Yang, Weiguo Hou, Fangru Li, Yuxiang Zhao, Baolan Hu, Xiao Zou, Ye Deng*. Metabolic interdependencies in thermophilic communities are revealed using co-occurrence and complementarity networks. Nature Communications, 2024, 15: 8166 Read More
  2. Xi Peng, Kai Feng*, Xingsheng Yang, Qing He, Bo Zhao, Tong Li, Shang Wang, Ye Deng*. iNAP 2.0: Harnessing metabolic complementarity in microbial network analysis. iMeta, 2024, 4: 235 Read More
  3. 🔥Xingsheng Yang, Kai Feng, Shang Wang, Mengting Maggie Yuan, Xi Peng, Qing He, Danrui Wang, Wenli Shen, Bo Zhao, Xiongfeng Du, Yingcheng Wang, Linlin Wang, Dong Cao, Wenzong Liu, Jianjun Wang, Ye Deng* . Unveiling the deterministic dynamics of microbial meta-metabolism: a multi-omics investigation of anaerobic biodegradation. Microbiome, 2024, 12: 166 Read More
  4. Kai Feng, Shang Wang, Qing He, Michael Bonkowski, Mohammad Bahram, Etienne Yergeau, Zhujun Wang, Xi Peng, Danrui Wang, Shuzhen Li, Yingcheng Wang, Zhicheng Ju, Xiongfeng Du, Chengliang Yan, Songsong Gu, Tong Li, Xingsheng Yang, Wenli Shen, Ziyan Wei, Qiulong Hu, Pengfei Li, Yanmei Zhu, Guangxin Lu, Clara Qin, Gengxin Zhang, Chunwang Xiao, Yunfeng Yang, Jizhong Zhou, Ye Deng*. CoBacFM: Core Bacteria Forecast Model for Global Grassland pH Dynamics under Future Climate Warming Scenarios. One Earth, 2024, 7(7): 1275-1287 Read More
  5. Tong Li, Kai Feng, Shang Wang, Xingsheng Yang, Xi Peng, Qichao Tu, Ye Deng*. Beyond Water and Soil: Air Emerges as a Major Reservoir of Human Pathogens. Environment International, 2024, 190: 108869 Read More
  6. Bo Zhao, Zhaojing Zhang, Kai Feng, Xi Peng, Danrui Wang, Weiwei Cai, Wenzong Liu, Aijie Wang, Ye Deng*. Inoculum source determines the stress resistance of electroactive functional taxa in biofilms: A metagenomic perspective. Science of the Total Environment, 2024, 945: 174018 Read More
  7. Yong-Chao Wang, Ya-Hui Lv, Can Wang*, Ye Deng*, Yu-Ting Lin, Guan-Yu Jiang, Xu-Rui Hu, John C Crittenden. Stochastic processes shape microbial community assembly in biofilters: Hidden role of rare taxa. Bioresource Technology, 2024, 402: 130838 Read More
  8. Shuping Wang#, Songsong Gu#, Yaqun Zhang, Ye Deng*, Wenhui Qiu, Qianhang Sun, Tianxu Zhang, Pengyuan Wang, Zhenguang Yan*. Microeukaryotic plankton community dynamics under ecological water replenishment:Insights from eDNA metabarcoding. Environmental Science and Ecotechnology, 2024, 20: 100409 Read More
  9. 🏆Jing Tian#*, Jennifer Dungait#*, Ruixing Hou#, Ye Deng#, Iain Hartley, Yunfeng Yang, Yakov Kuzyakov, Fusuo Zhang*, M. Francesca Cotrufo*, Jizhong Zhou*. Microbially mediated mechanisms underlie soil carbon accrual by conservation agriculture under decade-long warming. Nature Communications, 2024, 15: 377 Read More
  10. 🏆Yang Yu, Yong Zhou, Ivan Janssens, Ye Deng, Xiaojia He, Lingli Liu, Yin Yi, Nengwen Xiao, Xiaodong Wang, Chao Li, Chunwang Xiao. Divergent rhizosphere and non-rhizosphere soil microbial structure and function in long-term warmed steppe due to altered root exudation. Global Change Biology, 2024, 30(1): e17111 Read More
  11. Wei Wei, Jing Li, Boyu Tang, Ye Deng, Yan Li, Qianming Chen. Metabolomics and Metagenomics Reveal the Impact of γδ T Inhibition on Gut Microbiota and Metabolism in Periodontitis-Promoting OSCC. mSystems, 2024, DOI: 10.1128/msystems.00777-23 Read More
  12. Zheng Hao, Qianhong Wang, Jianjun Wang, Ye Deng, Zaisheng Yan, Linqi Tian, Helong Jiang. Water Level Fluctuations Modulate the Microbiomes Involved in Biogeochemical Cycling in Floodplains. Microbial Ecology, 2024, 87(1): 24 Read More
  13. Zhang Yang, Zhipeng Xiao, Lin Tan, Can Wang, Pengfei Li, Ye Deng, Huiya Xie, Shaolong Wu, Qiulong Hu. Interdomain ecological network analysis infers the endophytic bacteria protect against Fusarium root rot invasion. Plant Stress, 2024, 11: 100358 Read More
  14. Xingxing Zhang, Yiwei Wang, Pengbo Jiao, Ming Zhang, Ye Deng, Chengying Jiang, Xian-Wei Liu, Liping Lou, Yongmei Li, Xu-Xiang Zhang, Liping Ma*. Microbiome-functionality in Anaerobic Digesters: A Critical Review. Water Research, 2024, 249: 120891 Read More
  15. Linqi Tian, Ye Deng, Helong Jiang*. Comparing the benthic nitrogenase activity and diazotrophic community assembly of three large river-connected freshwater lakes in eastern China. Journal of Environmental Sciences, 2024, 150: 134-148 Read More
  16. Hao-Jie Huang, Xi Zhang, Xin-Wei Sun, Biao Chen, Xiu-Tong Li, Nan Zhou, Rashidin Abdugheni, Qiu-Yin Cheng, Tie-Jun Zhang, Yao Liu, Yong Jiang, Ye Deng, Shuang-Jiang Liu*, Cheng-Ying Jiang*. Xiashengella succiniciproducens gen. nov., sp. nov., a succinate-producing bacterium isolated from an anaerobic digestion tank in the family Marinilabiliaceae of the order Bacteroidales. Archives of Microbiology, 2024, 206: 141 Read More
  17. Xingyun Yi, Kristian Koefoed Brandt, Shudan Xue, Jingjing Peng, Yifei Wang, Meng Li, Ye Deng, Guilan Duan*. Niche differentiation and biogeography of Bathyarchaeia in paddy soil ecosystems: a case study in eastern China. Environmental Microbiome, 2024, 19: 13 Read More
  18. Zongrui Lai, Zhen Liu, Ye Deng, Wei Feng, Yuanyuan Zhao, Shugao Qin, Yanfei Sun*. Distinguishing the effects of micro- and macro-habitats on plant-associated microbiomes in the Qinghai-Tibetan Qaidam Basin. Land Degradation & Development, 2024, 35(10): 3344-3361 Read More
  19. Enzhao Wang, Bing Yu, Jiayin Zhang, Songsong Gu, Yunfeng Yang, Ye Deng, Xue Guo, Buqing Wei, Jingjing Bi, Miaomiao Sun, Huaqi Feng, Alin Song*, Fenliang Fan. Low Carbon Loss from Long-Term Manure-Applied Soil during Abrupt Warming Is Realized through Soil and Microbiome Interplay. Environmental Science & Technology, 2024, 58(22): 9658-9668 Read More
  20. Yunyun Gao, Kai Peng, Defeng Bai, Xiao-Ye Bai, Yujing Bi, Anqi Chen, Baodong Chen, Feng Chen, Juan Chen, Lei Chen, Tong Chen, Wei Chen, Xu Cheng, Yanfen Cheng, Jie Cui, Jingjing Dai, Junbiao Dai, Zhaolai Dai, Ye Deng, Yi-Zhen Deng, Wei Ding, Zhencheng Fang, Wei Fu, Hanbing Gao, Shaohua Gu, Xue Guo, Xuguang Guo, Dongfei Han, Lele He, Yatao He, Hui-Yu Hou, Baolei Jia, Gengjie Jia, Shuo Jiao, Wei Jin, Feng Ju, Zhicheng Ju, Siyuan Kong, Canhui Lan, Bing Li, Da Li, Diyan Li, Jingdi Li, Meng Li, Qi Li, Qiang Li, Wen-Jun Li, Xiaofang Li, Xuemeng Li, Yahui Li, You-Gui Li, Zhibin Liang, Ning Ling, Fufeng Liu, Qing Liu, Shuang-Jiang Liu, Hongye Lu, Qi Lu, Guangwen Luo, Hao Luo, Yuheng Luo, Hujie Lyu, Chuang Ma, Liyuan Ma, Tengfei Ma, Jinfeng Ni, Ziqin Pang, Xiaojing Qiang, Yuan Qin, Qingyue Qu, Chao Ran, Shuqiang Ren, Haitao Shang, Luyang Song, Linyang Sun, Weimin Sun, Liping Tang, Jian Tian, Kai Wang, Mengzhi Wang, Ming-Ke Wang, Tao Wang, Xiao-Yan Wang, Yao Wang, Yiwen Wang, Youshan Wang, Hailei Wei, Hong Wei, Zhong Wei, Tao Wen, Jiqiu Wu, Linhuan Wu, Linkun Wu, Jiao Xi, Bo Xie, Guofang Xu, Jun Xu, Shanshan Xu, Qing Xue, Liping Yan, Haifei Yang, Jun Yang, Junbo Yang, Ruifu Yang, Yalin Yang, Ying-Jie Yang, Xiaofang Yao, Yanpo Yao, Salsabeel Yousuf, Ke Yu, Zhengrong Yuan, Zhilin Yuan, Dong Zhang, Tianyuan Zhang, Weipeng Zhang, Yunzeng Zhang, Zhaonan Zhang, Zhen Zhang, Zhi-Feng Zhang, Shengguo Zhao, Wei Zhao, Maosheng Zheng, Ziqiang Zheng, Xin Zhou, Yuanping Zhou, Zhigang Zhou, Mo Zhu, Yong-Guan Zhu, Haiyan Chu*, Yang Bai*, Yong-Xin Liu*. The Microbiome Protocols eBook initiative: Building a bridge to microbiome research. iMeta, 2024, 3(2): e182 Read More
  21. Songsong Gu, Shaolong Wu, Weiai Zeng, Ye Deng, Gongwen Luo, Pengfei Li, Yishuai Yang, Zhengqiang Wang, Qiulong Hu*, Lin Tan*. High-elevation-induced decrease in soil pH weakens ecosystem multifunctionality by influencing soil microbiomes. Environmental Research, 2024, 257: 119330 Read More
  22. Juanjuan Xiao, Deying Wang, Banerjee Sinchan, Ryan Mushinski, Decai Jin, Ye Deng. Response patterns of the microbiome during hexavalent chromium remediation by Tagetes erecta L.. Science of the Total Environment, 2024, 935: 173413 Read More
  23. Xun Wang, Peifang Wang*, Ye Deng, Xiaolei Xing, Qiusheng Yuan, Chenggong Du, Jiawen Gan, Yuran Zheng, Yunxin Liu, Yufan Xia, Yuan Fang. Impacts of cascade hydropower development on river ecosystem homeostasis: A review. Journal of Hydrology, 2024, 638: 131484 Read More
  24. Zhenyan Zhang, Qi Zhang, Bingfeng Chen, Yitian Yu, Tingzhang Wang, Nuohan Xu, Xiaoji Fan, Josep Penuelas, Zhengwei Fu, Ye Deng, Yong-Guan Zhu, Haifeng Qian*. Global biogeography of microbes driving ocean ecological status under climate change. Nature Communications, 2024, 15: 4657 Read More
  25. Yunpeng Zhao, Chengzhu Liu, Enze Kang, Xingqi Li, Ye Deng, Xiaojuan Feng*. Plant–microbe interactions underpin contrasting enzymatic responses to wetland drainage. Nature Climate Change, 2024, https://doi.org/10.1038/s41558-024-02101-3 Read More
  26. Xuefeng Zhu, Kaikai Min, Kai Feng, Hongtu Xie, Hongbo He, Xudong Zhang, Ye Deng, Chao Liang . Microbial necromass contribution to soil carbon storage via community assembly processes. Science of the Total Environment, 2024, 951: 175749 Read More
  27. Ben Ma, Mengting Chu, Haihan Zhang*, Kaige Chen, Fengrui Li, Xiang Liu, Dmitry B. Kosolapov, Wei Zhi, Zhongbing Chen, Jun Yang, Ye Deng, Raju Sekark, Tao Liu, Xiaoyan Liu, Tinglin Huang. Mixotrophic aerobic denitrification facilitated by denitrifying bacterial-fungal communities assisted with iron in micro-polluted water: Performance, metabolic activity, functional genes abundance, and community co-occurrence. Journal of Hazardous Materials, 2024, 476: 135057 Read More
  28. Hao Yu, Qi Huang, Jianan Men, Jian Wang, Juanjuan Xiao, Decai Jin*, Ye Deng. Chromium contamination affects the fungal community and increases the complexity and stability of the network in long-term contaminated soils. Environmental Research, 2024, 262: 119946 Read More
  29. Zi-Yan Wei, Min Feng, Ding-Xi Zhang, Cheng-Ying Jiang, Ye Deng, Zhu-Jun Wang, Kai Feng, Yang Song, Nan Zhou, Yu-Lin Wang, Shuang-Jiang Liu*. Deep insights into the assembly mechanisms, co-occurrence patterns, and functional roles of microbial community in wastewater treatment plants. Environmental Research, 2024, 263: 120029 Read More
  30. Lingfang Ni, Jiaping Wu, Hongyue Dang, Carlos M. Duarte, Kai Feng, Ye Deng, Daoqiong Zheng, Dongdong Zhang*. Stand age-related effects of mangrove on archaeal methanogenesis in sediments: Community assembly and co-occurrence patterns. Science of the Total Environment, 2024, 954: 176596 Read More
  31. Xiao Kong, Giovanni Davide Barone, Decai Jin*, Yiting Mao, Fengting Nan, Li Xu, Zhigang Wang, Ye Deng, Tomislav Cernava. Pollution Status, Ecological Effects, and Bioremediation Strategies of Phthalic Acid Esters in Agricultural Ecosystems: A Review. Journal of Agricultural and Food Chemistry, 2024, 72(50): 27668–27678 Read More
  32. 于皓, 刘琦, 邓晔*, 顾松松, 芦光新, 周学丽. 补播和施肥对高寒退化草地根际细菌群落的影响. 环境科学, 2024 in press Read More
  33. 王尚, 冯凯, 李瞳, 王洁, 顾松松, 杨兴盛, 李春格, 邓晔*. 环境病原微生物研究数据库及数据挖掘方法. 生物技术通报, 2024 in press Read More
  34. 王洁，王尚*，李曈，张昱，邓晔. 气候变化下的流域饮用水微生物风险来源与评估. 微生物学报, 2024, 64(12): 4624-4640 Read More