Publications in 2026

  1. (New!) Bo Zhao, Xingsheng Yang, Kai Feng, Jie Wang, Mingqian Liu, Yingcheng Wang, Danrui Wang, Xi Peng, Qing He, Yanjuan Lu, Hassan Waseem, Shang Wang, Ye Deng*. Phylogenetic assembly of methanogenesis regulates methane yield in food-waste anaerobic digestion. ISME Journal, 2026, 20(1): wrag083 Read More
  2. (New!) Jie Wang, Shang Wang*, Tong Li, Weiguo Hou, Ye Deng*. A watershed-scale potential pathogenic bacteria dataset from the Yangtze River Basin. Scientific Data, 2026, 13: 581 Read More
  3. (New!) Mengyue Sun, Mingcong Li, Baohua Xie*, Guangshan Wei, Yuqi Zhou, Wenxi Zhou, Wenchong Shi, Guangxuan Han, Ye Deng* & Zheng Gao*. Heterogeneous responses of soil microbial communities and functions in coastal wetlands to long-term nitrogen deposition. NPJ Biofilms and Microbiomes, 2026, in press Read More
  4. (New!) Hassan Waseem, Kai Feng, Bo Zhao, Xingsheng Yang, Mingqian Liu, Jie Wang, Jiaying Li, Qing He, Shang Wang, Yanjuan Lu, Banu Ormeci, Ye Deng*. Diversity and geographic distribution of antibiotic resistance in food waste anaerobic digestion systems. Journal of Hazardous Materials, 2026, in press Read More
  5. (New!) Xi Peng, Xingsheng Yang, Danrui Wang, Bo Zhao, Kai Feng, Qing He, Shang Wang, Ye Deng*. From short to long: The impact of read length on metagenome assembly and binning. Methods in Ecology and Evolution, 2026, in press Read More
  6. (New!) Tong Li, Kai Feng, Shang Wang, Xiongfeng Du, Jingjing Li, Songsong Gu, Bo Zhao, Xingsheng Yang, Xi Peng, Qing He, Yingcheng Wang, Danrui Wang, Jie Wang, Zhihan Wang, Mingqian Liu, Juanjuan Xiao, Jianan Men, Decai Jin, Jingwei Zhang, Ye Deng*. Integrating Digital PCR and Metagenomics to Quantify Potential Soilborne Bacterial Pathogens in Urban Ecosystem. Journal of Hazardous Materials, 2026, 512: 142312 Read More
  7. Xingsheng Yang, Bo Zhao, Kai Feng, Jie Wang, Mingqian Liu, Xi Peng, Qing He, Yanjuan Lu, Hassan Waseem, Shang Wang, Mari-Karoliina H Winkler, Joana Falcão Salles, Ye Deng*. Microbial synthesis structures organic compound composition in anaerobic digestion. ISME Journal, 2026, in press Read More
  8. Wenli Shen, Chengliang Yan, Huilin Yan, Xueli Zhou, Yingcheng Wang, Xingsheng Yang, Xi Peng, Songsong Gu, Danrui Wang, Kai Feng, Qing He, Shang Wang, Guangxin Lu, Ye Deng*. Organic Fertilization Shapes Diazotrophic Microbiomes in Legume and Grass Rhizospheres of the Qinghai-Tibet Plateau. Journal of Environmental Sciences, 2026, 162: 710-718 Read More
  9. Min Zhang, Zhuzhong Yin, Yu Liu, Yanyu Li, Zhenghua Liu, Zhaoyue Yang, Zhengqi Xu, Ibrahim Ahmed Ibrahim, Fenliang Fan, Ye Deng, Xueduan Liu, Chengying Jiang, Huaqun Yin, Delong Meng*. Glucose input limits microbial-mediated sulfur release from soil minerals. Soil Biology & Biochemistry, 2026, 216: 110109 Read More
  10. Baogang Zhang, Shuquan Yu, Xiaoling Niu, Shuo Jiao, Xinli Chen, Ye Deng, Yunying Fang, Tony Vancov, Jian Chen, Scott X. Chang, Yanjiang Cai*. Invasive bamboo removal enhances soil multifunctionality via increasing fungal but not bacterial community stability. Forest Ecosystems, 2026, 15: 100436 Read More
  11. S. Ahmad, F. Maqbool, Z. A. Bhatti,M. F. Siddiqui, L. Xu, A. Iqbal,Y. Deng, and A. Yaqu. Reclamation of Iron Extraction Site with Organic Residues and Phytocapping with Sesbania sesban and its Impacts on Microbial Ecology. Eurasian Soil Science, 2026, 59: 26 Read More
  12. Yang Yu,  Biao Zhu, Xiran Li, Xin Chen, Ye Deng, Chunwang Xiao*. Warming favors fungal partnerships in dominant plants but bacterial alliances in subordinate species. Plant Cell and Environment, 2026, in press Read More
  13. Shuang Han, Qing He*, Youcui Yang, Juan Shen, Chunyan Long, Xiaofei Zou, Haoting Yan, Guang Feng, Gangxiang Fei, Lu Qiao, Kai Feng, Mingqian Liu, Xiao Zou*, Ye Deng. Homogeneous selection and immigration limitation jointly shape brewing- suitable microbiomes in distillery workshops across Maotai town. Food Research International, 2026, 231: 118671 Read More
  14. Hui Wang, Ze Zhao, Limin Lin, Ao Dong, Ye Deng, Jizhong Zhou, Feng Ju*. Candidatus dermatophostum as a novel genus of polyphosphate-accumulating organisms for high-strength wastewater treatment. ISME Journal, 2026, in press Read More
  15. Songsong Gu, Xiongfeng Du, Jie Su, Changsheng Guo, Hanchen Deng, Ye Deng, Shuping Wang*. Environmental DNA-based tracking and mapping reveal process-driven seasonal dynamics in fish diversity and community assemblages. Journal of Environmental Management, 2026, 397, 128203 Read More
  16. (New!) Ning Wang, Junhui Cheng, Yunhua Liu, Xuewei Wang, Ye Deng, Gang Wang, Jiandong Sheng*. Linking microbial diversity and network complexity to soil multifunctions in Tianshan Mountains. Soil Ecology Letters, 2026, 8(3): 260413 Read More
  17. (New!) Ding Wang, Xingjie Wu, Yuting Zhang, Xiaoxuan Su, Ye Deng, Chao Liang,Ke-Qing Xiao*,Xiaojun Shi*. Long-term nitrogen inputs drive microbial necromass carbon accrual through life-history shifts. Agriculture Ecosystems & Environment, 2026, 407: 110459 Read More
  18. (New!) Linwei Wu*, Da-Shuai Mu, Jing An, Yanan Wang, Xiaomin Fan, De-Chen Lu, Ya Zhang, Yinan Xie, Jonathan Michael, Daniel Curtis, Yupeng Fan, Yajiao Wang, Xue Guo, Qichao Tu, Qingyun Yan, Qun Gao, Zhili He, Ye Deng, Kai Xue, Liyou Wu, Daliang Ning, Xuanyu Tao, Yunfeng Yang, Jizhong Zhou*. Decade-long warming accelerates antibiotic resistance in grassland soils. Nature, 2026, in press Read More